Query 042863
Match_columns 680
No_of_seqs 271 out of 3499
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.9E-58 8.5E-63 506.3 38.0 543 2-562 161-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 2E-52 4.2E-57 487.6 50.4 598 1-649 186-840 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.5E-37 7.6E-42 309.1 17.1 279 4-290 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-21 2.8E-26 229.7 18.1 279 356-645 70-367 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.7E-21 3.7E-26 228.7 16.8 253 402-675 159-416 (968)
6 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.7E-23 204.4 18.4 127 502-649 779-908 (1153)
7 KOG4194 Membrane glycoprotein 99.8 7.8E-20 1.7E-24 182.6 5.7 314 350-677 73-406 (873)
8 KOG4194 Membrane glycoprotein 99.8 3.3E-20 7.2E-25 185.2 -0.1 158 402-559 192-351 (873)
9 KOG0444 Cytoskeletal regulator 99.8 5.3E-20 1.1E-24 185.0 -1.0 268 354-644 6-278 (1255)
10 KOG0444 Cytoskeletal regulator 99.7 7.8E-20 1.7E-24 183.8 -1.8 254 372-647 118-375 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 7.9E-17 1.7E-21 154.4 0.5 126 379-512 182-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.7E-17 3.6E-22 158.9 -5.5 220 402-645 86-308 (565)
13 PRK04841 transcriptional regul 99.6 2.3E-13 5E-18 159.3 23.9 280 24-339 30-332 (903)
14 KOG0617 Ras suppressor protein 99.5 3.4E-16 7.3E-21 132.6 -3.5 152 405-560 31-184 (264)
15 cd00116 LRR_RI Leucine-rich re 99.5 4.7E-15 1E-19 151.5 4.1 260 360-626 3-291 (319)
16 KOG0617 Ras suppressor protein 99.5 2.8E-16 6E-21 133.1 -5.5 163 378-547 31-194 (264)
17 PRK00411 cdc6 cell division co 99.5 1.1E-11 2.4E-16 130.2 26.4 297 1-316 32-358 (394)
18 PF01637 Arch_ATPase: Archaeal 99.5 2.4E-13 5.2E-18 132.1 12.5 197 1-210 1-234 (234)
19 COG3899 Predicted ATPase [Gene 99.5 2.4E-12 5.3E-17 144.5 19.3 313 1-338 2-385 (849)
20 cd00116 LRR_RI Leucine-rich re 99.5 9.7E-15 2.1E-19 149.2 0.1 265 400-673 16-317 (319)
21 TIGR02928 orc1/cdc6 family rep 99.4 6.9E-11 1.5E-15 122.8 27.1 302 1-317 17-351 (365)
22 PRK15370 E3 ubiquitin-protein 99.4 6.2E-13 1.3E-17 146.3 11.8 136 408-559 221-356 (754)
23 PRK15387 E3 ubiquitin-protein 99.4 1.3E-12 2.8E-17 142.9 13.4 234 354-646 221-457 (788)
24 COG2909 MalT ATP-dependent tra 99.4 2.6E-11 5.6E-16 128.6 22.0 295 9-342 25-341 (894)
25 TIGR00635 ruvB Holliday juncti 99.4 1.7E-11 3.6E-16 123.8 19.3 261 1-315 6-288 (305)
26 PRK00080 ruvB Holliday junctio 99.4 1.9E-11 4.2E-16 124.0 19.0 263 1-316 27-310 (328)
27 PRK15370 E3 ubiquitin-protein 99.4 1.5E-12 3.3E-17 143.2 11.6 231 353-625 197-427 (754)
28 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4.1E-17 141.5 11.7 225 353-632 240-464 (788)
29 KOG0618 Serine/threonine phosp 99.3 7.4E-14 1.6E-18 147.9 -1.9 242 380-646 241-488 (1081)
30 KOG0618 Serine/threonine phosp 99.3 2.1E-13 4.6E-18 144.5 -2.0 246 407-678 241-491 (1081)
31 TIGR03015 pepcterm_ATPase puta 99.3 4.4E-10 9.6E-15 111.4 21.6 184 26-214 43-242 (269)
32 COG2256 MGS1 ATPase related to 99.3 6.7E-11 1.5E-15 115.2 14.1 156 24-205 46-207 (436)
33 PF05729 NACHT: NACHT domain 99.2 9.8E-11 2.1E-15 106.9 12.2 146 27-178 1-163 (166)
34 PTZ00112 origin recognition co 99.2 1.8E-09 3.8E-14 115.8 22.6 306 1-315 757-1085(1164)
35 PF05496 RuvB_N: Holliday junc 99.2 1.4E-10 3E-15 105.6 9.4 181 1-215 26-226 (233)
36 KOG4237 Extracellular matrix p 99.1 3.1E-12 6.7E-17 123.1 -2.5 273 351-645 63-357 (498)
37 COG2255 RuvB Holliday junction 99.1 2.6E-09 5.6E-14 99.2 15.9 236 1-276 28-282 (332)
38 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.4E-16 117.9 0.3 143 476-625 155-310 (382)
39 KOG4237 Extracellular matrix p 99.1 6.6E-12 1.4E-16 120.9 -2.1 225 355-595 91-357 (498)
40 COG1474 CDC6 Cdc6-related prot 99.1 3.7E-08 8E-13 99.8 23.1 295 1-315 19-333 (366)
41 PRK13342 recombination factor 99.1 4.5E-09 9.8E-14 110.0 16.6 179 1-212 14-198 (413)
42 PRK12402 replication factor C 99.0 8.2E-09 1.8E-13 106.1 17.8 199 1-211 17-227 (337)
43 KOG4341 F-box protein containi 99.0 2.7E-11 5.9E-16 117.7 -0.8 284 356-649 139-441 (483)
44 TIGR03420 DnaA_homol_Hda DnaA 99.0 4.5E-09 9.8E-14 101.2 14.5 175 4-214 22-205 (226)
45 PRK14961 DNA polymerase III su 99.0 1.7E-08 3.8E-13 103.6 19.2 192 1-209 18-219 (363)
46 PF13191 AAA_16: AAA ATPase do 99.0 1.1E-09 2.4E-14 102.0 9.0 61 1-66 2-62 (185)
47 KOG1909 Ran GTPase-activating 99.0 7.5E-11 1.6E-15 112.3 0.7 256 372-646 22-310 (382)
48 PRK14949 DNA polymerase III su 99.0 1.6E-08 3.5E-13 110.4 18.5 183 1-211 18-221 (944)
49 PRK14960 DNA polymerase III su 99.0 2.2E-08 4.8E-13 106.0 18.1 192 1-208 17-217 (702)
50 PRK04195 replication factor C 99.0 6.2E-08 1.3E-12 103.6 21.8 184 1-211 16-203 (482)
51 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.2E-16 123.1 -4.7 132 401-537 115-246 (722)
52 PRK07003 DNA polymerase III su 99.0 5.9E-08 1.3E-12 103.9 20.9 193 1-209 18-220 (830)
53 KOG2028 ATPase related to the 99.0 9E-09 2E-13 98.5 13.2 160 24-205 160-331 (554)
54 PF13401 AAA_22: AAA domain; P 99.0 2.3E-09 5E-14 93.3 8.7 118 25-144 3-125 (131)
55 KOG4658 Apoptotic ATPase [Sign 98.9 7.5E-10 1.6E-14 124.2 5.4 238 406-654 544-790 (889)
56 PRK06893 DNA replication initi 98.9 2.4E-08 5.2E-13 95.5 15.0 157 25-214 38-207 (229)
57 PRK14957 DNA polymerase III su 98.9 6.2E-08 1.3E-12 102.7 19.2 183 1-211 18-222 (546)
58 PLN03025 replication factor C 98.9 5.8E-08 1.3E-12 98.2 18.4 182 1-208 15-198 (319)
59 KOG3207 Beta-tubulin folding c 98.9 3.8E-10 8.3E-15 110.5 2.0 204 355-559 121-336 (505)
60 PRK12323 DNA polymerase III su 98.9 4.3E-08 9.2E-13 103.6 17.1 198 1-210 18-225 (700)
61 PTZ00202 tuzin; Provisional 98.9 6.3E-08 1.4E-12 96.6 17.2 166 1-178 264-434 (550)
62 PRK14956 DNA polymerase III su 98.9 4.6E-08 9.9E-13 100.8 16.7 190 1-207 20-219 (484)
63 KOG3207 Beta-tubulin folding c 98.9 4.1E-10 8.8E-15 110.3 1.4 159 376-536 117-282 (505)
64 PRK00440 rfc replication facto 98.9 1.1E-07 2.3E-12 97.1 19.2 183 1-211 19-204 (319)
65 PRK14963 DNA polymerase III su 98.9 7.9E-08 1.7E-12 101.8 18.3 189 1-208 16-215 (504)
66 PRK14964 DNA polymerase III su 98.9 9.9E-08 2.1E-12 99.6 18.5 182 1-209 15-216 (491)
67 PRK07994 DNA polymerase III su 98.9 6.5E-08 1.4E-12 104.1 17.3 194 1-211 18-221 (647)
68 PRK05896 DNA polymerase III su 98.9 1E-07 2.3E-12 101.0 18.5 190 1-207 18-217 (605)
69 PRK06645 DNA polymerase III su 98.9 1.7E-07 3.8E-12 98.7 19.6 193 1-207 23-226 (507)
70 PRK07471 DNA polymerase III su 98.9 7.9E-08 1.7E-12 97.7 16.4 195 1-211 21-239 (365)
71 PRK09112 DNA polymerase III su 98.8 1.1E-07 2.3E-12 96.2 17.0 194 1-211 25-241 (351)
72 PRK08903 DnaA regulatory inact 98.8 6.8E-08 1.5E-12 92.8 15.0 156 25-214 41-203 (227)
73 PRK14962 DNA polymerase III su 98.8 1.6E-07 3.4E-12 98.7 18.5 185 1-213 16-222 (472)
74 PF05621 TniB: Bacterial TniB 98.8 1.7E-07 3.7E-12 90.0 16.6 197 6-205 44-256 (302)
75 PRK08691 DNA polymerase III su 98.8 1E-07 2.2E-12 102.0 16.7 179 1-210 18-220 (709)
76 PRK13341 recombination factor 98.8 1.4E-07 3.1E-12 103.8 18.3 174 1-207 30-214 (725)
77 PRK08084 DNA replication initi 98.8 9.5E-08 2.1E-12 91.7 14.7 159 26-214 45-213 (235)
78 TIGR00678 holB DNA polymerase 98.8 2E-07 4.4E-12 86.6 16.4 150 25-205 13-186 (188)
79 PRK14951 DNA polymerase III su 98.8 2E-07 4.3E-12 100.3 18.2 196 1-210 18-225 (618)
80 TIGR02397 dnaX_nterm DNA polym 98.8 4.3E-07 9.4E-12 94.0 20.4 184 1-211 16-219 (355)
81 PRK14958 DNA polymerase III su 98.8 1.4E-07 3.1E-12 100.1 17.0 183 1-210 18-220 (509)
82 PRK08727 hypothetical protein; 98.8 1.7E-07 3.7E-12 89.8 15.8 156 26-211 41-205 (233)
83 PF14580 LRR_9: Leucine-rich r 98.8 4.6E-09 1E-13 94.1 4.2 104 405-512 17-124 (175)
84 PRK07940 DNA polymerase III su 98.8 2.5E-07 5.3E-12 94.9 17.2 192 1-210 7-213 (394)
85 PRK14955 DNA polymerase III su 98.8 2.3E-07 4.9E-12 96.5 17.1 200 1-210 18-228 (397)
86 KOG0532 Leucine-rich repeat (L 98.8 7.2E-10 1.6E-14 112.0 -1.8 175 379-563 74-248 (722)
87 PRK14969 DNA polymerase III su 98.8 2.5E-07 5.4E-12 99.1 16.9 179 1-210 18-221 (527)
88 cd00009 AAA The AAA+ (ATPases 98.8 1.2E-07 2.5E-12 84.6 12.4 125 2-146 1-131 (151)
89 KOG4341 F-box protein containi 98.7 7.3E-10 1.6E-14 108.0 -2.4 263 376-651 133-418 (483)
90 PRK07133 DNA polymerase III su 98.7 5.6E-07 1.2E-11 97.6 18.9 191 1-210 20-219 (725)
91 PRK05564 DNA polymerase III su 98.7 4.5E-07 9.7E-12 91.5 17.0 179 1-210 6-190 (313)
92 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.5E-14 99.5 0.3 174 375-560 209-385 (490)
93 PRK14952 DNA polymerase III su 98.7 9E-07 1.9E-11 95.0 19.5 194 1-211 15-221 (584)
94 PRK08451 DNA polymerase III su 98.7 9.2E-07 2E-11 93.4 19.2 194 1-211 16-219 (535)
95 PRK09111 DNA polymerase III su 98.7 7.1E-07 1.5E-11 96.3 18.4 197 1-211 26-234 (598)
96 PRK14959 DNA polymerase III su 98.7 8.8E-07 1.9E-11 94.6 18.1 197 1-214 18-225 (624)
97 PRK14953 DNA polymerase III su 98.7 1.8E-06 3.8E-11 91.4 19.8 183 1-211 18-221 (486)
98 PRK14954 DNA polymerase III su 98.7 1.7E-06 3.7E-11 93.6 19.6 197 1-207 18-225 (620)
99 PF13173 AAA_14: AAA domain 98.6 1.2E-07 2.5E-12 81.8 8.7 121 27-169 3-126 (128)
100 PRK07764 DNA polymerase III su 98.6 1.1E-06 2.5E-11 98.0 18.2 190 1-207 17-218 (824)
101 PRK14970 DNA polymerase III su 98.6 1.7E-06 3.6E-11 89.8 18.1 182 1-209 19-208 (367)
102 PRK06305 DNA polymerase III su 98.6 2.1E-06 4.5E-11 90.3 18.5 177 1-208 19-220 (451)
103 PRK14948 DNA polymerase III su 98.6 1.7E-06 3.6E-11 94.2 18.0 196 1-211 18-223 (620)
104 PF14580 LRR_9: Leucine-rich r 98.6 2.8E-08 6.1E-13 89.1 3.6 128 376-510 15-149 (175)
105 PRK14950 DNA polymerase III su 98.6 3.1E-06 6.7E-11 92.5 19.5 196 1-212 18-223 (585)
106 PF00308 Bac_DnaA: Bacterial d 98.6 1.2E-06 2.7E-11 82.8 14.4 168 26-214 34-212 (219)
107 PRK05642 DNA replication initi 98.6 1.8E-06 3.8E-11 82.9 15.5 159 26-214 45-212 (234)
108 TIGR01242 26Sp45 26S proteasom 98.6 6.7E-07 1.5E-11 92.3 13.4 186 1-210 124-335 (364)
109 PRK14971 DNA polymerase III su 98.6 3.8E-06 8.3E-11 91.5 19.6 176 1-208 19-220 (614)
110 COG4886 Leucine-rich repeat (L 98.6 9.9E-08 2.1E-12 100.4 7.1 175 405-596 114-289 (394)
111 KOG0989 Replication factor C, 98.6 5.4E-07 1.2E-11 85.0 11.0 187 1-209 38-229 (346)
112 PRK06647 DNA polymerase III su 98.5 5.3E-06 1.2E-10 89.2 19.6 193 1-210 18-220 (563)
113 PRK09087 hypothetical protein; 98.5 1.3E-06 2.7E-11 83.0 13.0 149 26-214 44-199 (226)
114 PHA02544 44 clamp loader, smal 98.5 2.4E-06 5.3E-11 86.7 16.0 146 1-176 23-171 (316)
115 PRK03992 proteasome-activating 98.5 8.5E-07 1.8E-11 91.8 12.6 187 1-211 133-345 (389)
116 PF05673 DUF815: Protein of un 98.5 6E-06 1.3E-10 76.9 16.5 120 1-147 29-153 (249)
117 PRK05563 DNA polymerase III su 98.5 6.6E-06 1.4E-10 88.9 19.6 191 1-208 18-218 (559)
118 KOG2120 SCF ubiquitin ligase, 98.5 4.4E-09 9.5E-14 98.0 -4.0 86 381-468 186-274 (419)
119 KOG2120 SCF ubiquitin ligase, 98.5 4.9E-09 1.1E-13 97.6 -3.7 182 356-560 186-374 (419)
120 KOG2543 Origin recognition com 98.5 3.6E-06 7.8E-11 82.0 15.5 170 1-178 8-193 (438)
121 COG4886 Leucine-rich repeat (L 98.5 6.8E-08 1.5E-12 101.6 4.2 177 376-561 112-289 (394)
122 PRK14087 dnaA chromosomal repl 98.5 3.6E-06 7.7E-11 88.5 16.7 174 26-214 141-323 (450)
123 COG3267 ExeA Type II secretory 98.5 8.6E-06 1.9E-10 75.4 16.7 185 25-214 50-249 (269)
124 TIGR02903 spore_lon_C ATP-depe 98.5 2.8E-06 6E-11 93.0 16.2 201 1-213 156-398 (615)
125 PRK14965 DNA polymerase III su 98.5 6.1E-06 1.3E-10 89.6 17.8 193 1-210 18-221 (576)
126 KOG2982 Uncharacterized conser 98.5 7.9E-08 1.7E-12 89.8 2.5 188 429-631 70-267 (418)
127 COG3903 Predicted ATPase [Gene 98.4 7.5E-07 1.6E-11 88.1 9.1 291 25-338 13-313 (414)
128 PRK07399 DNA polymerase III su 98.4 1.6E-05 3.5E-10 79.4 18.4 195 1-210 6-221 (314)
129 TIGR02881 spore_V_K stage V sp 98.4 7.2E-06 1.6E-10 80.4 15.6 165 1-181 8-194 (261)
130 PRK06620 hypothetical protein; 98.4 6.4E-06 1.4E-10 77.5 14.2 144 27-214 45-193 (214)
131 TIGR02639 ClpA ATP-dependent C 98.4 2.7E-06 5.8E-11 95.7 13.8 155 1-179 184-359 (731)
132 PLN03150 hypothetical protein; 98.4 4.7E-07 1E-11 99.8 7.6 108 432-539 420-529 (623)
133 PLN03150 hypothetical protein; 98.4 6.1E-07 1.3E-11 99.0 7.6 109 455-563 419-529 (623)
134 CHL00181 cbbX CbbX; Provisiona 98.4 4.8E-05 1E-09 75.1 19.5 145 26-186 59-217 (287)
135 PRK05707 DNA polymerase III su 98.4 9E-06 1.9E-10 81.6 14.5 171 24-210 20-203 (328)
136 TIGR03345 VI_ClpV1 type VI sec 98.4 3.9E-06 8.5E-11 95.1 13.4 179 1-203 189-389 (852)
137 TIGR02880 cbbX_cfxQ probable R 98.3 3.5E-05 7.5E-10 76.2 17.9 139 27-181 59-211 (284)
138 CHL00095 clpC Clp protease ATP 98.3 5E-06 1.1E-10 94.7 13.6 154 1-178 181-354 (821)
139 PF14516 AAA_35: AAA-like doma 98.3 4.4E-05 9.6E-10 77.3 18.8 199 2-216 14-245 (331)
140 KOG1259 Nischarin, modulator o 98.3 1.4E-07 3E-12 88.2 0.5 129 405-538 282-412 (490)
141 KOG2227 Pre-initiation complex 98.3 1.7E-05 3.8E-10 79.4 14.7 211 1-214 152-376 (529)
142 PRK00149 dnaA chromosomal repl 98.3 2.4E-05 5.2E-10 83.2 17.0 166 25-211 147-323 (450)
143 TIGR00362 DnaA chromosomal rep 98.3 3.8E-05 8.2E-10 80.7 18.1 166 26-212 136-312 (405)
144 PRK14088 dnaA chromosomal repl 98.3 2E-05 4.2E-10 82.9 15.8 167 26-212 130-307 (440)
145 PF13855 LRR_8: Leucine rich r 98.3 8.2E-07 1.8E-11 65.1 3.9 59 407-465 1-60 (61)
146 COG1222 RPT1 ATP-dependent 26S 98.2 4.2E-05 9.2E-10 74.2 15.3 187 3-214 155-371 (406)
147 PRK08058 DNA polymerase III su 98.2 3.4E-05 7.4E-10 78.1 15.7 161 2-177 8-181 (329)
148 PRK15386 type III secretion pr 98.2 5.9E-06 1.3E-10 83.4 9.8 160 450-647 48-213 (426)
149 PRK12422 chromosomal replicati 98.2 8.2E-05 1.8E-09 78.1 18.8 159 26-205 141-308 (445)
150 KOG1514 Origin recognition com 98.2 4.7E-05 1E-09 80.2 16.4 209 3-215 400-626 (767)
151 PRK08769 DNA polymerase III su 98.2 8.2E-05 1.8E-09 74.0 17.3 177 6-211 11-209 (319)
152 PF00004 AAA: ATPase family as 98.2 4.7E-06 1E-10 72.4 7.5 97 29-145 1-112 (132)
153 PTZ00361 26 proteosome regulat 98.2 1E-05 2.3E-10 83.8 10.9 161 2-182 186-371 (438)
154 PTZ00454 26S protease regulato 98.2 2E-05 4.3E-10 81.2 12.7 186 2-211 148-359 (398)
155 TIGR00602 rad24 checkpoint pro 98.2 1.7E-05 3.7E-10 85.8 12.6 200 1-205 86-318 (637)
156 KOG0991 Replication factor C, 98.2 1.5E-05 3.3E-10 72.1 10.1 153 1-183 29-190 (333)
157 PRK11034 clpA ATP-dependent Cl 98.2 5.3E-05 1.2E-09 84.3 16.6 155 1-178 188-362 (758)
158 CHL00176 ftsH cell division pr 98.2 4.1E-05 9E-10 83.5 15.5 186 2-211 186-396 (638)
159 PRK06871 DNA polymerase III su 98.1 0.00011 2.3E-09 73.3 16.9 179 7-207 10-200 (325)
160 TIGR03346 chaperone_ClpB ATP-d 98.1 3.2E-05 7E-10 88.5 14.7 156 1-180 175-351 (852)
161 TIGR03689 pup_AAA proteasome A 98.1 9.6E-05 2.1E-09 77.9 16.1 167 2-180 185-380 (512)
162 PF10443 RNA12: RNA12 protein; 98.1 0.00023 4.9E-09 71.9 17.5 205 4-221 1-289 (431)
163 PF13855 LRR_8: Leucine rich r 98.1 2.8E-06 6.2E-11 62.2 3.2 59 431-489 2-60 (61)
164 cd01128 rho_factor Transcripti 98.1 6.7E-06 1.4E-10 78.8 6.3 89 27-116 17-114 (249)
165 PRK10865 protein disaggregatio 98.1 3.8E-05 8.2E-10 87.5 13.1 154 1-178 180-354 (857)
166 PRK14086 dnaA chromosomal repl 98.0 8.6E-05 1.9E-09 79.3 14.8 165 27-212 315-490 (617)
167 PRK07993 DNA polymerase III su 98.0 0.00016 3.5E-09 72.9 15.9 181 6-208 9-202 (334)
168 PRK15386 type III secretion pr 98.0 3.4E-05 7.4E-10 78.0 10.9 137 403-559 48-187 (426)
169 PF13177 DNA_pol3_delta2: DNA 98.0 6.4E-05 1.4E-09 67.5 11.6 138 3-166 1-162 (162)
170 smart00382 AAA ATPases associa 98.0 3.8E-05 8.2E-10 67.7 10.2 89 27-119 3-92 (148)
171 PRK10536 hypothetical protein; 98.0 5.1E-05 1.1E-09 71.7 10.9 127 2-143 58-211 (262)
172 TIGR02902 spore_lonB ATP-depen 98.0 3.9E-05 8.4E-10 82.7 11.2 175 1-183 67-281 (531)
173 TIGR01241 FtsH_fam ATP-depende 98.0 0.00011 2.4E-09 79.2 14.5 164 24-211 86-268 (495)
174 TIGR03345 VI_ClpV1 type VI sec 98.0 0.00013 2.8E-09 82.9 15.7 135 1-144 568-718 (852)
175 TIGR02640 gas_vesic_GvpN gas v 97.9 0.00038 8.2E-09 68.2 16.3 112 27-145 22-161 (262)
176 PRK08116 hypothetical protein; 97.9 8.4E-05 1.8E-09 72.6 11.5 105 26-145 114-221 (268)
177 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00013 2.7E-09 75.6 12.8 177 3-203 194-395 (802)
178 PRK09376 rho transcription ter 97.9 2.8E-05 6.1E-10 77.8 7.7 88 28-116 171-267 (416)
179 PLN00020 ribulose bisphosphate 97.9 0.00037 8.1E-09 69.0 15.1 154 24-205 146-333 (413)
180 PRK10865 protein disaggregatio 97.9 0.00025 5.4E-09 81.0 15.7 136 1-144 570-720 (857)
181 PRK06090 DNA polymerase III su 97.9 0.00089 1.9E-08 66.6 17.6 177 7-210 11-201 (319)
182 PRK04132 replication factor C 97.9 0.00035 7.7E-09 77.9 16.3 155 32-207 570-728 (846)
183 PF14532 Sigma54_activ_2: Sigm 97.9 1.8E-05 3.9E-10 69.2 5.1 109 2-145 1-110 (138)
184 KOG1947 Leucine rich repeat pr 97.9 3.9E-06 8.4E-11 91.1 1.1 241 375-652 183-445 (482)
185 PF02562 PhoH: PhoH-like prote 97.9 6.5E-05 1.4E-09 69.1 8.9 127 3-144 4-155 (205)
186 KOG1947 Leucine rich repeat pr 97.9 3E-06 6.6E-11 92.0 0.2 96 372-467 206-308 (482)
187 PRK13531 regulatory ATPase Rav 97.9 5.7E-05 1.2E-09 78.1 9.2 152 1-177 22-193 (498)
188 PF07693 KAP_NTPase: KAP famil 97.9 0.00086 1.9E-08 68.5 18.0 169 4-177 1-262 (325)
189 KOG2982 Uncharacterized conser 97.9 1.3E-05 2.8E-10 75.3 3.9 91 373-464 64-156 (418)
190 COG2607 Predicted ATPase (AAA+ 97.8 0.00074 1.6E-08 62.0 14.5 103 2-131 63-166 (287)
191 PRK11331 5-methylcytosine-spec 97.8 8E-05 1.7E-09 76.3 9.5 108 2-121 178-288 (459)
192 TIGR00763 lon ATP-dependent pr 97.8 0.00015 3.2E-09 82.4 12.4 165 1-178 322-505 (775)
193 COG0542 clpA ATP-binding subun 97.8 8.6E-05 1.9E-09 80.9 10.0 135 1-144 493-643 (786)
194 COG0470 HolB ATPase involved i 97.8 0.00028 6.2E-09 72.1 13.5 145 2-168 4-171 (325)
195 COG1223 Predicted ATPase (AAA+ 97.8 0.00081 1.8E-08 62.3 14.5 176 2-203 124-318 (368)
196 PRK08699 DNA polymerase III su 97.8 0.00031 6.7E-09 70.5 13.1 146 24-177 19-184 (325)
197 TIGR02639 ClpA ATP-dependent C 97.8 0.00033 7.2E-09 79.1 14.7 132 1-144 456-603 (731)
198 KOG2035 Replication factor C, 97.8 0.00015 3.3E-09 67.7 9.6 183 23-211 31-229 (351)
199 KOG3665 ZYG-1-like serine/thre 97.8 2.4E-05 5.3E-10 86.1 5.3 135 355-492 122-264 (699)
200 TIGR00767 rho transcription te 97.8 5.4E-05 1.2E-09 76.2 7.1 89 27-117 169-267 (415)
201 PRK12377 putative replication 97.8 7.6E-05 1.7E-09 71.4 7.8 103 26-145 101-206 (248)
202 COG0593 DnaA ATPase involved i 97.8 0.00063 1.4E-08 69.1 14.6 161 25-207 112-283 (408)
203 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00022 4.7E-09 81.8 12.8 136 1-145 567-718 (852)
204 COG2812 DnaX DNA polymerase II 97.8 0.00012 2.6E-09 76.6 9.7 193 1-210 18-220 (515)
205 PRK06964 DNA polymerase III su 97.8 0.00056 1.2E-08 68.7 14.1 109 89-210 112-225 (342)
206 KOG1969 DNA replication checkp 97.8 0.00044 9.4E-09 73.4 13.5 163 23-206 323-506 (877)
207 KOG0531 Protein phosphatase 1, 97.7 5.3E-06 1.1E-10 87.4 -0.8 107 402-512 90-197 (414)
208 PRK08181 transposase; Validate 97.7 0.00023 4.9E-09 69.1 10.4 100 27-145 107-209 (269)
209 PRK11034 clpA ATP-dependent Cl 97.7 0.00034 7.3E-09 78.0 13.0 132 1-144 460-607 (758)
210 PRK04296 thymidine kinase; Pro 97.7 0.00013 2.8E-09 67.6 7.9 113 27-146 3-117 (190)
211 TIGR01243 CDC48 AAA family ATP 97.7 0.00073 1.6E-08 76.6 15.6 186 2-211 456-665 (733)
212 COG5238 RNA1 Ran GTPase-activa 97.7 1.4E-05 3E-10 74.1 1.3 85 476-560 155-253 (388)
213 TIGR02974 phageshock_pspF psp 97.7 0.00023 5E-09 71.9 10.3 162 1-176 1-185 (329)
214 KOG0531 Protein phosphatase 1, 97.7 1.2E-05 2.7E-10 84.6 0.8 110 376-493 91-201 (414)
215 PF00158 Sigma54_activat: Sigm 97.7 0.00013 2.8E-09 65.6 7.2 131 1-145 1-144 (168)
216 COG0466 Lon ATP-dependent Lon 97.7 0.00018 3.9E-09 76.3 9.2 165 2-179 326-509 (782)
217 KOG1859 Leucine-rich repeat pr 97.7 2.2E-06 4.9E-11 89.7 -4.7 122 382-512 166-290 (1096)
218 CHL00095 clpC Clp protease ATP 97.6 0.00032 6.9E-09 80.2 11.8 136 1-145 511-662 (821)
219 KOG1859 Leucine-rich repeat pr 97.6 5.3E-06 1.2E-10 87.0 -2.3 176 355-538 109-292 (1096)
220 COG0542 clpA ATP-binding subun 97.6 0.00031 6.8E-09 76.7 10.8 158 1-180 172-348 (786)
221 TIGR01243 CDC48 AAA family ATP 97.6 0.00039 8.4E-09 78.8 12.1 179 2-204 181-381 (733)
222 PRK08939 primosomal protein Dn 97.6 0.00031 6.6E-09 69.9 9.8 122 4-145 136-261 (306)
223 PRK07952 DNA replication prote 97.6 0.00043 9.3E-09 66.2 10.4 119 7-145 84-205 (244)
224 PRK06921 hypothetical protein; 97.6 0.00048 1E-08 67.2 10.9 38 25-64 116-154 (266)
225 COG1373 Predicted ATPase (AAA+ 97.6 0.0012 2.7E-08 68.5 14.3 151 28-210 39-192 (398)
226 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00047 1E-08 72.9 11.2 158 24-203 257-428 (489)
227 KOG0733 Nuclear AAA ATPase (VC 97.6 0.0013 2.9E-08 68.3 13.9 135 26-180 545-694 (802)
228 KOG0744 AAA+-type ATPase [Post 97.6 0.0011 2.3E-08 63.6 12.1 79 26-114 177-259 (423)
229 PF04665 Pox_A32: Poxvirus A32 97.6 0.00035 7.6E-09 65.9 8.6 36 27-64 14-49 (241)
230 PRK11608 pspF phage shock prot 97.5 0.00066 1.4E-08 68.7 11.3 154 1-168 8-182 (326)
231 KOG0730 AAA+-type ATPase [Post 97.5 0.0006 1.3E-08 71.7 11.0 156 24-203 466-636 (693)
232 COG5238 RNA1 Ran GTPase-activa 97.5 1.1E-05 2.4E-10 74.8 -1.6 38 426-463 26-67 (388)
233 PF07728 AAA_5: AAA domain (dy 97.5 4.6E-05 1E-09 66.8 2.1 90 29-131 2-91 (139)
234 PF12799 LRR_4: Leucine Rich r 97.5 8.3E-05 1.8E-09 49.7 2.8 35 407-441 1-35 (44)
235 KOG4579 Leucine-rich repeat (L 97.5 1.8E-05 3.9E-10 65.7 -0.7 109 382-493 29-138 (177)
236 PF01695 IstB_IS21: IstB-like 97.5 0.00019 4.1E-09 65.4 5.8 101 26-145 47-150 (178)
237 KOG0734 AAA+-type ATPase conta 97.5 0.002 4.4E-08 65.9 13.4 156 6-181 314-487 (752)
238 PF00910 RNA_helicase: RNA hel 97.5 0.00025 5.4E-09 58.7 6.0 21 29-49 1-21 (107)
239 PRK06526 transposase; Provisio 97.5 0.00029 6.2E-09 68.1 7.2 101 26-145 98-201 (254)
240 PRK11889 flhF flagellar biosyn 97.5 0.0025 5.4E-08 64.2 13.7 106 24-131 239-348 (436)
241 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00014 3.1E-09 72.4 5.0 49 1-49 53-101 (361)
242 PRK10787 DNA-binding ATP-depen 97.5 0.00028 6E-09 79.4 7.8 164 1-178 324-506 (784)
243 PTZ00494 tuzin-like protein; P 97.5 0.0041 9E-08 62.6 14.9 166 1-178 373-544 (664)
244 PRK06835 DNA replication prote 97.4 0.00069 1.5E-08 68.0 9.7 103 27-145 184-289 (329)
245 KOG0731 AAA+-type ATPase conta 97.4 0.0028 6E-08 69.0 14.4 176 7-205 322-519 (774)
246 TIGR01817 nifA Nif-specific re 97.4 0.00088 1.9E-08 73.1 10.9 162 1-176 198-382 (534)
247 PRK15429 formate hydrogenlyase 97.4 0.0021 4.5E-08 72.5 13.9 154 1-168 378-552 (686)
248 KOG3665 ZYG-1-like serine/thre 97.4 8.1E-05 1.8E-09 82.1 2.6 150 380-532 122-282 (699)
249 KOG2228 Origin recognition com 97.4 0.0024 5.3E-08 61.7 11.9 174 1-178 26-219 (408)
250 KOG1051 Chaperone HSP104 and r 97.4 0.0016 3.5E-08 72.3 12.3 133 1-144 564-710 (898)
251 TIGR01650 PD_CobS cobaltochela 97.4 0.0087 1.9E-07 59.3 16.2 157 5-178 51-233 (327)
252 PF03215 Rad17: Rad17 cell cyc 97.4 0.0012 2.7E-08 70.2 11.2 55 4-63 24-78 (519)
253 KOG0727 26S proteasome regulat 97.4 0.0033 7.1E-08 58.0 12.2 141 24-184 187-345 (408)
254 TIGR02329 propionate_PrpR prop 97.4 0.0021 4.5E-08 69.0 12.8 161 1-175 214-398 (526)
255 KOG0735 AAA+-type ATPase [Post 97.4 0.0035 7.6E-08 66.5 13.9 156 26-205 701-871 (952)
256 KOG0741 AAA+-type ATPase [Post 97.4 0.0015 3.2E-08 66.8 10.7 137 22-177 534-685 (744)
257 PRK05022 anaerobic nitric oxid 97.4 0.0013 2.7E-08 71.2 11.2 154 1-168 189-363 (509)
258 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0011 2.3E-08 58.5 8.6 116 28-146 4-139 (159)
259 PRK09361 radB DNA repair and r 97.3 0.0014 3E-08 62.8 9.7 55 10-71 11-65 (225)
260 KOG0735 AAA+-type ATPase [Post 97.3 0.0031 6.7E-08 66.9 12.6 167 26-211 431-617 (952)
261 PRK10820 DNA-binding transcrip 97.3 0.0029 6.2E-08 68.5 13.1 154 1-168 206-380 (520)
262 PF10236 DAP3: Mitochondrial r 97.3 0.011 2.3E-07 59.3 16.2 49 159-207 258-306 (309)
263 COG1484 DnaC DNA replication p 97.3 0.0014 3E-08 63.4 9.3 102 26-145 105-209 (254)
264 PHA02244 ATPase-like protein 97.3 0.0018 3.9E-08 64.7 10.1 99 28-144 121-230 (383)
265 PRK08118 topology modulation p 97.3 0.00053 1.1E-08 61.9 5.8 34 28-61 3-37 (167)
266 KOG0728 26S proteasome regulat 97.3 0.016 3.4E-07 53.6 15.0 178 3-201 151-354 (404)
267 cd01394 radB RadB. The archaea 97.2 0.0018 3.8E-08 61.8 9.7 54 9-68 6-59 (218)
268 PRK07132 DNA polymerase III su 97.2 0.021 4.5E-07 56.6 17.2 167 8-210 5-185 (299)
269 cd01120 RecA-like_NTPases RecA 97.2 0.0024 5.2E-08 57.6 10.1 38 29-68 2-39 (165)
270 KOG2004 Mitochondrial ATP-depe 97.2 0.0011 2.5E-08 70.2 8.6 163 2-178 414-596 (906)
271 TIGR02237 recomb_radB DNA repa 97.2 0.0013 2.9E-08 62.2 8.5 45 25-72 11-55 (209)
272 PRK09183 transposase/IS protei 97.2 0.0019 4.1E-08 62.9 9.6 101 27-145 103-206 (259)
273 KOG2170 ATPase of the AAA+ sup 97.2 0.0037 8E-08 59.6 11.0 116 2-131 85-204 (344)
274 PRK12608 transcription termina 97.2 0.0018 3.8E-08 65.1 9.4 86 28-115 135-230 (380)
275 KOG1644 U2-associated snRNP A' 97.2 0.00058 1.3E-08 61.0 5.2 40 451-490 61-100 (233)
276 cd00544 CobU Adenosylcobinamid 97.2 0.0008 1.7E-08 60.5 6.2 37 29-70 2-38 (169)
277 cd00983 recA RecA is a bacter 97.2 0.0008 1.7E-08 66.8 6.6 82 26-114 55-142 (325)
278 PF07724 AAA_2: AAA domain (Cd 97.2 0.00042 9E-09 62.6 4.1 105 27-146 4-131 (171)
279 PRK10733 hflB ATP-dependent me 97.2 0.0031 6.8E-08 69.9 11.8 153 26-202 185-355 (644)
280 PF00448 SRP54: SRP54-type pro 97.2 0.0026 5.7E-08 58.9 9.4 89 26-116 1-94 (196)
281 cd01393 recA_like RecA is a b 97.1 0.003 6.6E-08 60.6 10.3 46 25-72 18-69 (226)
282 COG1875 NYN ribonuclease and A 97.1 0.0067 1.5E-07 59.5 11.9 130 3-143 228-386 (436)
283 PRK15424 propionate catabolism 97.1 0.0051 1.1E-07 66.0 12.3 156 1-168 221-404 (538)
284 KOG0743 AAA+-type ATPase [Post 97.1 0.0087 1.9E-07 60.7 13.1 156 26-215 235-414 (457)
285 TIGR02012 tigrfam_recA protein 97.1 0.00092 2E-08 66.3 6.2 84 25-115 54-143 (321)
286 PRK09354 recA recombinase A; P 97.1 0.0019 4.1E-08 64.7 8.4 83 26-115 60-148 (349)
287 PRK06067 flagellar accessory p 97.1 0.0029 6.2E-08 61.0 9.6 87 24-115 23-130 (234)
288 PRK05541 adenylylsulfate kinas 97.1 0.0011 2.5E-08 60.6 6.2 37 25-63 6-42 (176)
289 COG1224 TIP49 DNA helicase TIP 97.1 0.018 3.8E-07 56.4 14.1 80 107-188 293-384 (450)
290 PF12799 LRR_4: Leucine Rich r 97.0 0.0007 1.5E-08 45.2 3.3 21 470-490 16-36 (44)
291 COG0714 MoxR-like ATPases [Gen 97.0 0.0026 5.6E-08 64.8 9.0 112 1-131 26-138 (329)
292 COG2884 FtsE Predicted ATPase 97.0 0.0041 8.9E-08 55.2 8.7 62 92-153 142-205 (223)
293 PRK05703 flhF flagellar biosyn 97.0 0.012 2.7E-07 61.5 14.0 103 26-130 221-326 (424)
294 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0043 9.3E-08 59.9 10.0 56 24-80 17-76 (235)
295 PF13604 AAA_30: AAA domain; P 97.0 0.0013 2.9E-08 61.1 6.1 118 6-142 5-128 (196)
296 PRK14974 cell division protein 97.0 0.0073 1.6E-07 60.7 11.6 103 24-128 138-247 (336)
297 PRK12726 flagellar biosynthesi 97.0 0.011 2.3E-07 59.5 12.5 104 24-129 204-311 (407)
298 PRK07261 topology modulation p 97.0 0.0018 4E-08 58.7 6.7 22 28-49 2-23 (171)
299 KOG0652 26S proteasome regulat 97.0 0.007 1.5E-07 56.2 10.2 175 3-202 175-375 (424)
300 CHL00206 ycf2 Ycf2; Provisiona 97.0 0.009 1.9E-07 71.1 13.5 26 24-49 1628-1653(2281)
301 COG0464 SpoVK ATPases of the A 97.0 0.0069 1.5E-07 65.6 12.2 157 24-202 274-445 (494)
302 COG0465 HflB ATP-dependent Zn 97.0 0.0079 1.7E-07 64.2 12.1 178 3-204 154-355 (596)
303 PRK06696 uridine kinase; Valid 97.0 0.0025 5.5E-08 60.8 7.7 43 3-48 2-44 (223)
304 KOG4579 Leucine-rich repeat (L 96.9 0.00012 2.6E-09 60.9 -1.3 98 371-473 44-141 (177)
305 PRK15455 PrkA family serine pr 96.9 0.00069 1.5E-08 71.2 3.5 49 1-49 78-126 (644)
306 PRK12723 flagellar biosynthesi 96.9 0.01 2.3E-07 60.8 12.0 107 24-132 172-283 (388)
307 PRK11388 DNA-binding transcrip 96.9 0.0061 1.3E-07 68.3 11.3 152 1-168 327-498 (638)
308 PRK00771 signal recognition pa 96.9 0.015 3.2E-07 60.7 13.2 89 24-115 93-185 (437)
309 cd03115 SRP The signal recogni 96.9 0.011 2.4E-07 54.0 11.0 87 28-116 2-93 (173)
310 PHA00729 NTP-binding motif con 96.9 0.0057 1.2E-07 57.1 8.8 24 25-48 16-39 (226)
311 PF06068 TIP49: TIP49 C-termin 96.8 0.0069 1.5E-07 60.1 9.6 103 107-210 280-392 (398)
312 PF08423 Rad51: Rad51; InterP 96.8 0.0036 7.9E-08 60.8 7.8 54 27-81 39-96 (256)
313 PF13207 AAA_17: AAA domain; P 96.8 0.00083 1.8E-08 57.2 2.9 21 28-48 1-21 (121)
314 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.01 2.2E-07 57.2 10.6 60 9-76 8-67 (237)
315 cd01122 GP4d_helicase GP4d_hel 96.8 0.019 4.1E-07 56.8 12.9 85 27-116 31-122 (271)
316 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.018 4E-07 55.2 12.3 113 26-143 20-164 (229)
317 COG1066 Sms Predicted ATP-depe 96.8 0.0034 7.4E-08 62.6 7.0 81 27-116 94-179 (456)
318 PF06309 Torsin: Torsin; Inte 96.8 0.0069 1.5E-07 50.5 7.7 48 2-49 28-76 (127)
319 TIGR03499 FlhF flagellar biosy 96.8 0.012 2.6E-07 58.2 11.0 88 25-114 193-281 (282)
320 cd01121 Sms Sms (bacterial rad 96.8 0.01 2.2E-07 60.7 10.7 82 26-115 82-168 (372)
321 KOG0736 Peroxisome assembly fa 96.8 0.025 5.4E-07 61.0 13.6 71 26-116 705-775 (953)
322 PRK08533 flagellar accessory p 96.8 0.012 2.5E-07 56.4 10.5 48 26-77 24-71 (230)
323 PRK07276 DNA polymerase III su 96.8 0.059 1.3E-06 52.9 15.4 155 5-176 8-173 (290)
324 PRK12724 flagellar biosynthesi 96.7 0.011 2.3E-07 60.6 10.5 102 25-130 222-326 (432)
325 TIGR00708 cobA cob(I)alamin ad 96.7 0.0094 2E-07 53.2 8.9 118 27-146 6-141 (173)
326 TIGR02238 recomb_DMC1 meiotic 96.7 0.0077 1.7E-07 60.2 9.3 56 26-82 96-155 (313)
327 KOG1644 U2-associated snRNP A' 96.7 0.0021 4.6E-08 57.5 4.5 102 408-511 43-150 (233)
328 COG4608 AppF ABC-type oligopep 96.7 0.01 2.2E-07 56.4 9.2 122 27-151 40-176 (268)
329 PRK14722 flhF flagellar biosyn 96.7 0.02 4.3E-07 58.3 11.9 89 26-116 137-226 (374)
330 cd03247 ABCC_cytochrome_bd The 96.7 0.014 3.1E-07 53.4 10.2 117 27-149 29-161 (178)
331 cd03214 ABC_Iron-Siderophores_ 96.7 0.013 2.8E-07 53.8 9.9 119 27-148 26-161 (180)
332 cd03228 ABCC_MRP_Like The MRP 96.7 0.012 2.6E-07 53.5 9.4 118 27-149 29-159 (171)
333 PLN03187 meiotic recombination 96.7 0.012 2.6E-07 59.2 10.1 56 26-82 126-185 (344)
334 KOG2123 Uncharacterized conser 96.7 0.00024 5.1E-09 66.4 -1.8 80 403-484 37-123 (388)
335 PRK10923 glnG nitrogen regulat 96.6 0.0085 1.8E-07 64.6 9.6 154 1-168 140-314 (469)
336 KOG0739 AAA+-type ATPase [Post 96.6 0.019 4E-07 54.7 10.2 157 22-203 162-334 (439)
337 COG0468 RecA RecA/RadA recombi 96.6 0.011 2.5E-07 57.2 9.2 88 24-114 58-150 (279)
338 cd03223 ABCD_peroxisomal_ALDP 96.6 0.024 5.2E-07 51.2 10.9 116 27-148 28-151 (166)
339 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0036 7.8E-08 62.0 5.7 48 1-48 63-110 (358)
340 TIGR00064 ftsY signal recognit 96.6 0.02 4.4E-07 56.1 10.8 91 24-116 70-165 (272)
341 PRK08233 hypothetical protein; 96.6 0.0071 1.5E-07 55.7 7.3 24 26-49 3-26 (182)
342 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.0092 2E-07 56.3 8.1 23 26-48 29-51 (213)
343 COG4088 Predicted nucleotide k 96.5 0.044 9.6E-07 49.4 11.6 23 27-49 2-24 (261)
344 cd01131 PilT Pilus retraction 96.5 0.004 8.7E-08 58.1 5.5 107 28-145 3-109 (198)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.026 5.7E-07 49.5 10.4 102 27-148 27-130 (144)
346 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.0085 1.8E-07 61.0 8.2 107 24-144 60-167 (362)
347 PRK05986 cob(I)alamin adenolsy 96.5 0.011 2.4E-07 53.6 8.0 118 26-146 22-159 (191)
348 PRK05800 cobU adenosylcobinami 96.5 0.0059 1.3E-07 55.1 6.3 21 28-48 3-23 (170)
349 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.0084 1.8E-07 58.5 7.9 40 25-66 35-74 (259)
350 cd03216 ABC_Carb_Monos_I This 96.5 0.011 2.3E-07 53.3 8.0 114 27-148 27-145 (163)
351 TIGR02239 recomb_RAD51 DNA rep 96.5 0.018 4E-07 57.7 10.4 56 25-81 95-154 (316)
352 cd03230 ABC_DR_subfamily_A Thi 96.5 0.011 2.5E-07 53.8 8.3 117 27-149 27-159 (173)
353 cd03238 ABC_UvrA The excision 96.5 0.025 5.4E-07 51.3 10.3 112 27-148 22-152 (176)
354 KOG0742 AAA+-type ATPase [Post 96.5 0.024 5.2E-07 56.4 10.6 26 23-48 381-406 (630)
355 PRK05439 pantothenate kinase; 96.5 0.024 5.2E-07 56.1 10.8 81 22-106 82-166 (311)
356 COG1419 FlhF Flagellar GTP-bin 96.5 0.038 8.3E-07 55.8 12.3 105 26-132 203-310 (407)
357 TIGR00390 hslU ATP-dependent p 96.5 0.007 1.5E-07 61.6 7.2 48 1-48 14-69 (441)
358 PRK10867 signal recognition pa 96.5 0.028 6.2E-07 58.5 11.8 90 24-115 98-193 (433)
359 PF01583 APS_kinase: Adenylyls 96.5 0.0046 1E-07 54.2 5.1 37 26-64 2-38 (156)
360 PRK12727 flagellar biosynthesi 96.5 0.015 3.2E-07 61.2 9.6 89 26-116 350-439 (559)
361 cd03246 ABCC_Protease_Secretio 96.5 0.016 3.4E-07 52.9 8.7 116 27-149 29-160 (173)
362 TIGR02915 PEP_resp_reg putativ 96.4 0.014 3.1E-07 62.4 9.8 153 2-168 142-315 (445)
363 KOG2739 Leucine-rich acidic nu 96.4 0.0016 3.4E-08 60.9 2.1 61 452-512 63-127 (260)
364 KOG2739 Leucine-rich acidic nu 96.4 0.00096 2.1E-08 62.3 0.7 87 405-492 41-130 (260)
365 TIGR00382 clpX endopeptidase C 96.4 0.016 3.4E-07 59.9 9.4 48 1-48 79-138 (413)
366 COG1102 Cmk Cytidylate kinase 96.4 0.0089 1.9E-07 51.6 6.3 44 28-84 2-45 (179)
367 cd01133 F1-ATPase_beta F1 ATP 96.4 0.022 4.7E-07 55.1 9.7 34 28-63 71-104 (274)
368 KOG0737 AAA+-type ATPase [Post 96.4 0.021 4.6E-07 56.3 9.6 152 24-204 125-296 (386)
369 KOG0730 AAA+-type ATPase [Post 96.4 0.043 9.3E-07 58.3 12.4 159 22-204 214-386 (693)
370 COG1124 DppF ABC-type dipeptid 96.4 0.035 7.6E-07 51.7 10.5 66 87-152 140-209 (252)
371 KOG1970 Checkpoint RAD17-RFC c 96.4 0.052 1.1E-06 56.4 12.7 43 6-48 89-132 (634)
372 PRK09270 nucleoside triphospha 96.4 0.019 4.1E-07 55.0 9.3 27 23-49 30-56 (229)
373 PRK04328 hypothetical protein; 96.4 0.017 3.6E-07 56.1 8.8 40 25-66 22-61 (249)
374 PRK05917 DNA polymerase III su 96.4 0.14 3.1E-06 50.1 15.1 135 8-165 6-154 (290)
375 PRK06731 flhF flagellar biosyn 96.3 0.045 9.7E-07 53.3 11.5 103 26-130 75-181 (270)
376 COG4133 CcmA ABC-type transpor 96.3 0.054 1.2E-06 48.3 10.8 49 97-145 140-190 (209)
377 TIGR00554 panK_bact pantothena 96.3 0.019 4.1E-07 56.4 9.0 80 23-105 59-141 (290)
378 COG0572 Udk Uridine kinase [Nu 96.3 0.017 3.6E-07 53.4 8.0 25 24-48 6-30 (218)
379 cd02025 PanK Pantothenate kina 96.3 0.018 3.9E-07 54.6 8.6 73 28-103 1-76 (220)
380 KOG0924 mRNA splicing factor A 96.3 0.034 7.3E-07 58.9 10.9 136 26-164 371-529 (1042)
381 PF13479 AAA_24: AAA domain 96.3 0.015 3.3E-07 54.9 8.0 72 27-114 4-77 (213)
382 PF00154 RecA: recA bacterial 96.3 0.013 2.9E-07 58.0 7.7 82 26-114 53-140 (322)
383 COG0563 Adk Adenylate kinase a 96.3 0.0066 1.4E-07 55.1 5.1 22 28-49 2-23 (178)
384 PRK05973 replicative DNA helic 96.3 0.021 4.5E-07 54.3 8.6 40 26-67 64-103 (237)
385 PF00485 PRK: Phosphoribulokin 96.3 0.018 3.8E-07 53.7 8.2 77 28-107 1-85 (194)
386 cd03229 ABC_Class3 This class 96.3 0.022 4.8E-07 52.1 8.7 120 27-149 27-165 (178)
387 TIGR00959 ffh signal recogniti 96.3 0.041 9E-07 57.3 11.5 90 24-115 97-192 (428)
388 TIGR03880 KaiC_arch_3 KaiC dom 96.3 0.03 6.5E-07 53.6 9.9 39 26-66 16-54 (224)
389 cd03222 ABC_RNaseL_inhibitor T 96.2 0.037 8.1E-07 50.3 9.9 107 27-149 26-136 (177)
390 COG0529 CysC Adenylylsulfate k 96.2 0.0088 1.9E-07 52.5 5.4 38 24-63 21-58 (197)
391 COG1643 HrpA HrpA-like helicas 96.2 0.033 7.1E-07 62.5 11.1 147 6-163 53-223 (845)
392 PRK07667 uridine kinase; Provi 96.2 0.012 2.7E-07 54.6 6.8 37 8-48 3-39 (193)
393 PLN03186 DNA repair protein RA 96.2 0.035 7.6E-07 56.1 10.3 56 26-82 123-182 (342)
394 COG2204 AtoC Response regulato 96.2 0.045 9.8E-07 56.9 11.2 153 1-167 143-316 (464)
395 TIGR00416 sms DNA repair prote 96.2 0.04 8.7E-07 58.2 11.2 39 26-66 94-132 (454)
396 KOG0736 Peroxisome assembly fa 96.2 0.057 1.2E-06 58.3 12.0 178 3-205 405-599 (953)
397 PF08433 KTI12: Chromatin asso 96.2 0.016 3.4E-07 56.5 7.5 35 27-63 2-36 (270)
398 PTZ00035 Rad51 protein; Provis 96.2 0.047 1E-06 55.3 11.1 56 25-81 117-176 (337)
399 PRK00889 adenylylsulfate kinas 96.2 0.016 3.5E-07 52.9 7.1 37 26-64 4-40 (175)
400 PF06745 KaiC: KaiC; InterPro 96.1 0.016 3.5E-07 55.5 7.4 85 25-114 18-124 (226)
401 KOG0729 26S proteasome regulat 96.1 0.022 4.7E-07 53.2 7.7 44 5-48 183-233 (435)
402 cd03283 ABC_MutS-like MutS-lik 96.1 0.054 1.2E-06 50.5 10.6 22 27-48 26-47 (199)
403 cd00984 DnaB_C DnaB helicase C 96.1 0.037 8.1E-07 53.6 10.0 50 27-80 14-64 (242)
404 PRK05342 clpX ATP-dependent pr 96.1 0.013 2.9E-07 60.8 7.1 48 1-48 73-130 (412)
405 PRK11823 DNA repair protein Ra 96.1 0.034 7.3E-07 58.8 10.1 39 26-66 80-118 (446)
406 PTZ00088 adenylate kinase 1; P 96.1 0.0055 1.2E-07 58.2 3.8 21 28-48 8-28 (229)
407 cd02027 APSK Adenosine 5'-phos 96.1 0.016 3.4E-07 51.2 6.5 21 28-48 1-21 (149)
408 PRK05201 hslU ATP-dependent pr 96.1 0.015 3.3E-07 59.3 7.0 48 1-48 17-72 (443)
409 PRK04301 radA DNA repair and r 96.1 0.05 1.1E-06 55.0 10.9 56 25-81 101-160 (317)
410 TIGR01818 ntrC nitrogen regula 96.1 0.023 5E-07 61.2 9.0 161 2-176 137-320 (463)
411 PRK10463 hydrogenase nickel in 96.1 0.029 6.3E-07 54.7 8.6 87 24-116 102-195 (290)
412 PRK03846 adenylylsulfate kinas 96.0 0.022 4.7E-07 53.3 7.6 38 24-63 22-59 (198)
413 PF13238 AAA_18: AAA domain; P 96.0 0.0043 9.3E-08 53.4 2.6 21 29-49 1-21 (129)
414 KOG0651 26S proteasome regulat 96.0 0.021 4.6E-07 54.8 7.2 30 24-55 164-193 (388)
415 TIGR01425 SRP54_euk signal rec 96.0 0.1 2.2E-06 54.1 12.9 41 24-66 98-138 (429)
416 PRK10416 signal recognition pa 96.0 0.026 5.6E-07 56.6 8.3 91 24-116 112-207 (318)
417 cd03215 ABC_Carb_Monos_II This 96.0 0.091 2E-06 48.3 11.4 116 27-148 27-167 (182)
418 PF07726 AAA_3: ATPase family 96.0 0.0034 7.3E-08 52.4 1.6 28 28-57 1-28 (131)
419 PRK15115 response regulator Gl 96.0 0.067 1.5E-06 57.2 11.9 152 2-168 137-310 (444)
420 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.033 7.1E-07 49.8 8.0 117 27-150 26-145 (157)
421 KOG0738 AAA+-type ATPase [Post 95.9 0.044 9.4E-07 54.4 9.1 25 24-48 243-267 (491)
422 PF13481 AAA_25: AAA domain; P 95.9 0.044 9.5E-07 51.0 9.1 41 27-67 33-81 (193)
423 PRK09519 recA DNA recombinatio 95.9 0.039 8.5E-07 61.3 9.9 83 26-115 60-148 (790)
424 TIGR02655 circ_KaiC circadian 95.9 0.047 1E-06 58.7 10.4 52 9-66 250-301 (484)
425 PF13671 AAA_33: AAA domain; P 95.9 0.006 1.3E-07 53.6 3.0 21 28-48 1-21 (143)
426 COG1618 Predicted nucleotide k 95.9 0.0062 1.3E-07 52.5 2.9 23 26-48 5-27 (179)
427 TIGR00150 HI0065_YjeE ATPase, 95.9 0.012 2.6E-07 50.2 4.6 43 5-51 5-47 (133)
428 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.039 8.4E-07 51.5 8.5 121 26-153 29-159 (204)
429 COG1136 SalX ABC-type antimicr 95.9 0.11 2.3E-06 48.7 11.1 65 88-152 142-210 (226)
430 PRK06217 hypothetical protein; 95.9 0.023 5E-07 52.3 6.9 22 28-49 3-24 (183)
431 KOG3347 Predicted nucleotide k 95.9 0.011 2.5E-07 50.0 4.2 104 26-151 7-110 (176)
432 cd02019 NK Nucleoside/nucleoti 95.9 0.0062 1.3E-07 45.6 2.4 22 28-49 1-22 (69)
433 COG1117 PstB ABC-type phosphat 95.9 0.052 1.1E-06 49.4 8.5 25 24-48 31-55 (253)
434 cd02028 UMPK_like Uridine mono 95.8 0.017 3.7E-07 52.8 5.8 36 28-65 1-36 (179)
435 COG4618 ArpD ABC-type protease 95.8 0.039 8.5E-07 56.8 8.7 22 27-48 363-384 (580)
436 PRK13695 putative NTPase; Prov 95.8 0.011 2.4E-07 54.0 4.5 22 28-49 2-23 (174)
437 cd02021 GntK Gluconate kinase 95.8 0.07 1.5E-06 47.3 9.6 21 28-48 1-21 (150)
438 COG1126 GlnQ ABC-type polar am 95.8 0.13 2.8E-06 47.1 10.9 121 27-150 29-201 (240)
439 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.047 1E-06 51.9 8.6 122 27-148 31-202 (254)
440 PRK11361 acetoacetate metaboli 95.8 0.023 5.1E-07 61.0 7.6 131 3-145 147-288 (457)
441 KOG0726 26S proteasome regulat 95.8 0.091 2E-06 50.0 10.2 52 3-56 189-247 (440)
442 PRK06762 hypothetical protein; 95.8 0.0076 1.7E-07 54.5 3.3 23 26-48 2-24 (166)
443 PF03308 ArgK: ArgK protein; 95.8 0.018 3.9E-07 54.4 5.6 59 7-69 14-72 (266)
444 PF12775 AAA_7: P-loop contain 95.8 0.0034 7.5E-08 61.4 0.9 23 26-48 33-55 (272)
445 smart00534 MUTSac ATPase domai 95.7 0.011 2.3E-07 54.6 4.0 22 28-49 1-22 (185)
446 PRK13543 cytochrome c biogenes 95.7 0.12 2.7E-06 48.8 11.4 23 27-49 38-60 (214)
447 cd03264 ABC_drug_resistance_li 95.7 0.069 1.5E-06 50.5 9.6 53 97-149 140-193 (211)
448 PRK06547 hypothetical protein; 95.7 0.015 3.2E-07 52.7 4.7 26 24-49 13-38 (172)
449 cd01125 repA Hexameric Replica 95.7 0.06 1.3E-06 52.0 9.3 22 28-49 3-24 (239)
450 PF13245 AAA_19: Part of AAA d 95.7 0.037 8.1E-07 42.1 6.1 23 26-48 10-32 (76)
451 PRK13540 cytochrome c biogenes 95.7 0.088 1.9E-06 49.3 10.1 53 98-150 138-192 (200)
452 PRK13765 ATP-dependent proteas 95.7 0.024 5.1E-07 62.1 7.0 73 1-83 33-105 (637)
453 TIGR03574 selen_PSTK L-seryl-t 95.7 0.032 7E-07 54.3 7.3 20 29-48 2-21 (249)
454 COG0488 Uup ATPase components 95.7 0.12 2.5E-06 55.6 11.9 132 27-164 349-511 (530)
455 PRK13949 shikimate kinase; Pro 95.6 0.11 2.3E-06 47.0 10.1 21 28-48 3-23 (169)
456 cd03233 ABC_PDR_domain1 The pl 95.6 0.09 1.9E-06 49.3 9.9 23 27-49 34-56 (202)
457 cd01124 KaiC KaiC is a circadi 95.6 0.014 2.9E-07 54.1 4.3 36 29-66 2-37 (187)
458 COG3910 Predicted ATPase [Gene 95.6 0.083 1.8E-06 47.0 8.7 25 25-49 36-60 (233)
459 PF01078 Mg_chelatase: Magnesi 95.6 0.016 3.5E-07 53.1 4.6 40 1-48 5-44 (206)
460 PRK09544 znuC high-affinity zi 95.6 0.11 2.3E-06 50.6 10.7 122 27-148 31-184 (251)
461 PF09848 DUF2075: Uncharacteri 95.6 0.066 1.4E-06 55.1 9.7 40 27-66 2-41 (352)
462 PRK05818 DNA polymerase III su 95.6 0.43 9.3E-06 45.7 14.2 129 26-165 7-147 (261)
463 PRK14723 flhF flagellar biosyn 95.6 0.31 6.7E-06 54.3 15.1 88 26-115 185-273 (767)
464 TIGR02868 CydC thiol reductant 95.6 0.091 2E-06 57.6 11.2 23 27-49 362-384 (529)
465 KOG1532 GTPase XAB1, interacts 95.5 0.013 2.8E-07 55.0 3.7 28 21-48 14-41 (366)
466 TIGR01313 therm_gnt_kin carboh 95.5 0.02 4.3E-07 51.6 5.0 20 29-48 1-20 (163)
467 PTZ00301 uridine kinase; Provi 95.5 0.028 6E-07 52.7 6.0 22 27-48 4-25 (210)
468 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.12 2.6E-06 49.3 10.5 23 27-49 49-71 (224)
469 PRK09435 membrane ATPase/prote 95.5 0.075 1.6E-06 53.4 9.3 42 23-66 53-94 (332)
470 KOG2123 Uncharacterized conser 95.5 0.0016 3.4E-08 61.2 -2.4 39 581-619 85-123 (388)
471 COG1221 PspF Transcriptional r 95.5 0.2 4.4E-06 51.2 12.3 151 2-168 81-252 (403)
472 PRK10875 recD exonuclease V su 95.5 0.081 1.8E-06 58.0 10.2 23 27-49 168-190 (615)
473 PRK05480 uridine/cytidine kina 95.5 0.012 2.7E-07 55.5 3.5 26 24-49 4-29 (209)
474 TIGR02858 spore_III_AA stage I 95.5 0.23 5E-06 48.4 12.3 115 25-149 110-233 (270)
475 COG1120 FepC ABC-type cobalami 95.5 0.12 2.5E-06 49.6 9.9 62 89-150 139-204 (258)
476 cd03263 ABC_subfamily_A The AB 95.4 0.074 1.6E-06 50.7 8.8 52 98-149 144-196 (220)
477 PRK00279 adk adenylate kinase; 95.4 0.11 2.4E-06 49.2 9.9 21 28-48 2-22 (215)
478 cd03243 ABC_MutS_homologs The 95.4 0.027 5.9E-07 52.8 5.6 22 27-48 30-51 (202)
479 COG2274 SunT ABC-type bacterio 95.4 0.057 1.2E-06 60.1 8.8 52 97-148 619-672 (709)
480 KOG3928 Mitochondrial ribosome 95.4 0.47 1E-05 47.8 14.1 58 156-214 402-460 (461)
481 PF02374 ArsA_ATPase: Anion-tr 95.4 0.02 4.3E-07 57.2 4.8 44 27-72 2-45 (305)
482 PRK04040 adenylate kinase; Pro 95.4 0.014 3.1E-07 53.7 3.5 23 26-48 2-24 (188)
483 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.17 3.7E-06 49.0 11.1 123 27-149 26-180 (246)
484 TIGR02236 recomb_radA DNA repa 95.4 0.047 1E-06 55.1 7.6 56 25-81 94-153 (310)
485 cd03369 ABCC_NFT1 Domain 2 of 95.4 0.26 5.6E-06 46.4 12.1 51 98-148 136-187 (207)
486 cd03244 ABCC_MRP_domain2 Domai 95.4 0.18 3.8E-06 48.1 11.1 22 27-48 31-52 (221)
487 TIGR00764 lon_rel lon-related 95.3 0.045 9.7E-07 60.2 7.7 71 1-82 20-91 (608)
488 COG0467 RAD55 RecA-superfamily 95.3 0.025 5.4E-07 55.5 5.2 41 24-66 21-61 (260)
489 TIGR03522 GldA_ABC_ATP gliding 95.3 0.089 1.9E-06 52.8 9.2 52 98-149 144-196 (301)
490 PRK15453 phosphoribulokinase; 95.3 0.09 2E-06 50.8 8.7 77 25-103 4-88 (290)
491 cd03217 ABC_FeS_Assembly ABC-t 95.3 0.12 2.5E-06 48.4 9.5 118 27-149 27-168 (200)
492 TIGR00235 udk uridine kinase. 95.3 0.016 3.4E-07 54.6 3.6 25 24-48 4-28 (207)
493 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.2E-07 54.0 3.3 23 26-48 3-25 (188)
494 COG0003 ArsA Predicted ATPase 95.3 0.033 7.2E-07 55.4 5.9 49 26-76 2-50 (322)
495 cd03240 ABC_Rad50 The catalyti 95.3 0.076 1.6E-06 49.8 8.0 52 98-149 132-187 (204)
496 cd03245 ABCC_bacteriocin_expor 95.3 0.2 4.4E-06 47.6 11.2 51 98-148 151-202 (220)
497 PRK14721 flhF flagellar biosyn 95.3 0.11 2.3E-06 54.0 9.6 88 25-114 190-278 (420)
498 PF10923 DUF2791: P-loop Domai 95.2 0.11 2.5E-06 53.4 9.7 83 2-89 28-117 (416)
499 TIGR03575 selen_PSTK_euk L-ser 95.2 0.062 1.3E-06 54.0 7.6 21 29-49 2-22 (340)
500 PF04851 ResIII: Type III rest 95.2 0.19 4.2E-06 46.0 10.6 48 6-63 10-57 (184)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-58 Score=506.26 Aligned_cols=543 Identities=32% Similarity=0.551 Sum_probs=433.0
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchh-hhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQR-VEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
||.+.-++.+.+.|... +..+++|+||||+||||||+++.+... +..+|+.++|+.++..++...++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHH
Confidence 78999999999999762 237999999999999999999999877 88899999999999999999999999999
Q ss_pred hcCCCCC--CcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhccCCCCC
Q 042863 81 ITGQNQG--DLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTRGGTT 158 (680)
Q Consensus 81 l~~~~~~--~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~~~~~ 158 (680)
++..... +...++....+.+.++.+|++||+||+|+.. .|+.+...+|....|++|++|||+..++...- +...
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m--~~~~ 310 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAM--GVDY 310 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccc--cCCc
Confidence 9865433 3335789999999999999999999999764 48999999999888999999999999887621 2347
Q ss_pred ceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHHHhhhhcc-cc--
Q 042863 159 GYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYVRDNEIWK-LE-- 235 (680)
Q Consensus 159 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-- 235 (680)
.++++.|+.+||++||++.++......++.++++|++++++|+|+|+|+..+|+.|+.+....+|.++.+..... ..
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 799999999999999999998887777777999999999999999999999999999999999999998766544 22
Q ss_pred -cccccchhhHhccccCCcHHHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHHHHHHHHHHhCCccc
Q 042863 236 -QKANDILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIGMRSLKQLCSRSFFH 314 (680)
Q Consensus 236 -~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~ 314 (680)
...+.++.++..||+.|+++.|.||+++|+||+++.|+...++.+|+|+|++.........++.+.+++..|++++++.
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 2246899999999999998899999999999999999999999999999999997677888999999999999999999
Q ss_pred ccccCccEeEEEEcHHHHHHHHHhhc-----cccEEccC-------CCCCCCCceeEEEEeccCcchhhhHHHhhhcCCc
Q 042863 315 DLVRGFEMFTFKMHDLIHDLAQLVAK-----GEFLIGNS-------DSQSIPKRVRHLSFVGANASRKDFSRFLSDLGRV 382 (680)
Q Consensus 315 ~~~~~~~~~~~~~H~li~~~~~~~~~-----~e~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 382 (680)
.....+....+.|||++|++|.++++ ++..+... +....+..++.+++.++...... --.+++.|
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~---~~~~~~~L 547 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIA---GSSENPKL 547 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhcc---CCCCCCcc
Confidence 75543566689999999999999999 55544433 23444456788888877643321 23456789
Q ss_pred cEEEEecCCcccchHHHHHhhccCcceeEEEeCCCC-cccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEec
Q 042863 383 RTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSA-IEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNL 461 (680)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 461 (680)
++|-+..|.. ........+|..++.|++|||++|. +..+|..++++-+|++|+++++ .+..+|..+.++.+|.+|++
T Consensus 548 ~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 548 RTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheecc
Confidence 9999988642 1223334458899999999999864 4599999999999999999988 56799999999999999999
Q ss_pred CCccccccCcccccccCcccEEEeccccccccc---cccCcccccceeecccccCcccchhhccCCcccc----eeeccc
Q 042863 462 EECLELEELPKDIRYLVSLRVFEVTTKQKSLQD---SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLR----SLLIAG 534 (680)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~ 534 (680)
..+.....+|.....+++||+|.+......... ..+..+.+|+.+....... .+...+..++.|. .+.+.+
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcc
Confidence 998777777777778999999999766533222 2334445555555433221 1222223333333 223222
Q ss_pred ccCcccCCccCCCCCCcCeEeecCCCCc
Q 042863 535 CPCLISLPPAMRYLSSLETLMFVECESL 562 (680)
Q Consensus 535 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 562 (680)
+. ....+..+..+.+|+.|.+.+|...
T Consensus 704 ~~-~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 704 CS-KRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cc-cceeecccccccCcceEEEEcCCCc
Confidence 22 2234455667788888888888754
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-52 Score=487.63 Aligned_cols=598 Identities=22% Similarity=0.336 Sum_probs=398.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC---CcC---------
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS---EDF--------- 68 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~---~~~--------- 68 (680)
||||+++++++.+++.. ..++.++|+|+|+||+||||||+++++ +....|++.+|++.. ...
T Consensus 186 ~vG~~~~l~~l~~lL~l----~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLHL----ESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccchHHHHHHHHHHHcc----ccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccc
Confidence 69999999999999864 235689999999999999999999998 778889988887531 000
Q ss_pred --C-HHHHHHHHHHHhcCCCCC-CcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCc
Q 042863 69 --G-ERQIMTKIIKSITGQNQG-DLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRS 144 (680)
Q Consensus 69 --~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~ 144 (680)
. ...+..+++.++...... .... ..+++.++++++|||+||||+ ...++.+.....+++.|++||||||+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 0 112344455554332211 1111 456677889999999999954 45677777666667789999999999
Q ss_pred hHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHH
Q 042863 145 NKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWE 224 (680)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~ 224 (680)
..+...... ...++++.+++++|++||.+.+++...+ .+...+++.+|+++|+|+|+|+.++|++++. .+...|+
T Consensus 334 ~~vl~~~~~---~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~ 408 (1153)
T PLN03210 334 KHFLRAHGI---DHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWM 408 (1153)
T ss_pred HHHHHhcCC---CeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHH
Confidence 988765432 3679999999999999999999876433 3457788999999999999999999999985 5788999
Q ss_pred HHHhhhhcccccccccchhhHhccccCCcH-HHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHHHHH
Q 042863 225 YVRDNEIWKLEQKANDILPVLRFSYDQLPP-RLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIGMRS 303 (680)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~-~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~ 303 (680)
.+..+.... .+..+..++.+||+.|++ .+|.+|+++|+|+++..++ .+..|.+.+.+.. ...
T Consensus 409 ~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~ 471 (1153)
T PLN03210 409 DMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIG 471 (1153)
T ss_pred HHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhC
Confidence 887664432 345799999999999976 5899999999998886654 3455665543221 123
Q ss_pred HHHHHhCCcccccccCccEeEEEEcHHHHHHHHHhhccccEEcc------C--------CCCCCCCceeEEEEeccCcch
Q 042863 304 LKQLCSRSFFHDLVRGFEMFTFKMHDLIHDLAQLVAKGEFLIGN------S--------DSQSIPKRVRHLSFVGANASR 369 (680)
Q Consensus 304 l~~L~~~sll~~~~~~~~~~~~~~H~li~~~~~~~~~~e~~~~~------~--------~~~~~~~~~~~l~~~~~~~~~ 369 (680)
++.|+++++++... + .+.||+++++++++.++.+..... . ........++.+.+.......
T Consensus 472 l~~L~~ksLi~~~~--~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 472 LKNLVDKSLIHVRE--D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred hHHHHhcCCEEEcC--C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 88899999997532 2 689999999999999876531000 0 012233456777766544333
Q ss_pred hhh-HHHhhhcCCccEEEEecCCccc---chHHHHHhhccC-cceeEEEeCCCCcccccccccCcCCcceeccccccCCC
Q 042863 370 KDF-SRFLSDLGRVRTIFFSINDEKV---SQSFVRSCISKS-QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIK 444 (680)
Q Consensus 370 ~~~-~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 444 (680)
..+ ...|.+|++|+.|.+..+.... ....++..+..+ ..|+.|.+.++.+..+|..+ .+.+|..|++.+|. +.
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~ 624 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LE 624 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-cc
Confidence 222 4568899999999986542110 001112223333 34666666666666666554 34566666666653 44
Q ss_pred ccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccc-cccccccCcccccceeecccccCcccchhhccC
Q 042863 445 KLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQK-SLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQ 523 (680)
Q Consensus 445 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 523 (680)
.++..+..+++|+.|+|++|..+..+|. ++.+++|+.|++++|.. ..+|..+.++++|+.|++++|..++.+|..+ .
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 4555555566666666666555555553 55566666666665532 3345555666666666666666666665543 4
Q ss_pred CcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccC------------------CCCcCcccCCCCc
Q 042863 524 LRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEG------------------EGSHQASNTTRPH 585 (680)
Q Consensus 524 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 585 (680)
+++|+.|++++|.....+|.. .++|+.|+++++.....+....... ..........+++
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 566666666666554444432 2345555555543211110000000 0000111223578
Q ss_pred ccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcC--CCCCCeEEEcCCccccc
Q 042863 586 LRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPED--MLHLKTLRIRGCPALSD 649 (680)
Q Consensus 586 L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~--~~~L~~l~l~~c~~l~~ 649 (680)
|+.|++++|+.+..+|.++ +++++|+.|++++|+.++.+|.. +++|+.|++++|..+..
T Consensus 780 L~~L~Ls~n~~l~~lP~si-----~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSI-----QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred chheeCCCCCCccccChhh-----hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 9999999998888888654 48999999999999988888864 67899999999977654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.5e-37 Score=309.12 Aligned_cols=279 Identities=35% Similarity=0.629 Sum_probs=220.4
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG 83 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (680)
|++++++|.+.|... ..+.++|+|+|+||+||||||++++++......|+.++|+++....+...++..++..+..
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 899999999999873 2678999999999999999999999966688899999999999988889999999999986
Q ss_pred CCC---CCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhccCCCCCce
Q 042863 84 QNQ---GDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTRGGTTGY 160 (680)
Q Consensus 84 ~~~---~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~~~~~~~ 160 (680)
... ...+.++....+.+.++++++||||||+|+ ...|+.+...++....+++||+|||+..+...... ....+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~--~~~~~ 152 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGG--TDKVI 152 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGGGGTTHHS--CEEEE
T ss_pred cccccccccccccccccchhhhccccceeeeeeecc--ccccccccccccccccccccccccccccccccccc--ccccc
Confidence 643 567788899999999999999999999954 45777777777777778999999999877655432 13679
Q ss_pred eCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHHHhhhhccccc---c
Q 042863 161 NLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYVRDNEIWKLEQ---K 237 (680)
Q Consensus 161 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 237 (680)
++++|+++|+.+||.+.++.......+..++.+.+|++.|+|+|+|+.++|++++.+.....|+...+........ .
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999987665222334457789999999999999999999996555778898877654444322 3
Q ss_pred cccchhhHhccccCCcHHHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCC
Q 042863 238 ANDILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPL 290 (680)
Q Consensus 238 ~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~ 290 (680)
...+..++..||+.|+++.|+||.++++||+++.++...++..|+++|++...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 46799999999999999999999999999999999999999999999987654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.3e-21 Score=229.67 Aligned_cols=279 Identities=22% Similarity=0.231 Sum_probs=139.9
Q ss_pred ceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcc-cccccccCcCCcce
Q 042863 356 RVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIE-ALPKEIGNLKHMRY 434 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~ 434 (680)
+++.+.+.++..... .+..+..+++|+.|++++|.. ....+...+..+.+|++|+|++|.++ .+|. ..+++|++
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCcc--CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 455555555443322 234455666666666665542 11222233445556666666655554 2222 33455555
Q ss_pred eccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccc-ccccCcccccceeecccccC
Q 042863 435 LDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRN 513 (680)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 513 (680)
|++++|...+.+|..++.+++|++|++++|...+.+|..++++++|++|++++|.+... |..+.++++|+.|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 55555544445555555555555555555554445555555555555555555554432 44445555555555555544
Q ss_pred cccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCcccccccc--------------ccCCCCcCcc
Q 042863 514 LEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQ--------------LEGEGSHQAS 579 (680)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------------~~~~~~~~~~ 579 (680)
...+|..++.+++|+.|++++|.+.+.+|..++++++|++|++++|...... +.. .......+..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCChh
Confidence 4445555555555555555555544445555555555555555544311100 000 0001122233
Q ss_pred cCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCc
Q 042863 580 NTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCP 645 (680)
Q Consensus 580 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~ 645 (680)
...+++|+.|++.+|.....+|..+ ..+++|+.|++++|.....+|. .+++|+.|++++|.
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVAL-----TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhH-----hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 3455666666666665444444433 2666677777776665545553 34566667776663
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.7e-21 Score=228.67 Aligned_cols=253 Identities=21% Similarity=0.227 Sum_probs=155.9
Q ss_pred hhccCcceeEEEeCCCCcc-cccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 402 CISKSQFLRVLNLSGSAIE-ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
.++.+++|++|+|++|.+. .+|..+.++++|++|++++|...+.+|..++.+++|++|++++|...+.+|..++++++|
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 3455555666666555554 445555555566666665555555555555555666666666555555555555556666
Q ss_pred cEEEeccccccc-cccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCC
Q 042863 481 RVFEVTTKQKSL-QDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 481 ~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
++|++++|.+.. .+..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 666666555543 2445555566666666655544455555555666666666666555555555566666666666655
Q ss_pred CCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCC
Q 042863 560 ESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHL 636 (680)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L 636 (680)
... ...+.....+++|+.|++++|.....+|..+. .+++|+.|++++|.....+|. .+++|
T Consensus 319 ~~~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 319 NFT-----------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-----KHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred ccC-----------CcCChhHhcCCCCCEEECcCCCCcCcCChHHh-----CCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 321 12344456789999999999976667776544 889999999999987666765 35689
Q ss_pred CeEEEcCCcccccccCCCCCCCCccccccceeEecCccc
Q 042863 637 KTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLDDEII 675 (680)
Q Consensus 637 ~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 675 (680)
+.|++.+|..... . ...+....+++.+++.++.+
T Consensus 383 ~~L~l~~n~l~~~-~----p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 383 FKLILFSNSLEGE-I----PKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred CEEECcCCEeccc-C----CHHHhCCCCCCEEECcCCEe
Confidence 9999999854221 1 12334456777777665543
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.2e-18 Score=204.43 Aligned_cols=127 Identities=29% Similarity=0.477 Sum_probs=75.8
Q ss_pred ccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccC
Q 042863 502 SLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNT 581 (680)
Q Consensus 502 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (680)
+|+.|++++|..+..+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|..+. ....
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~--------------~~p~ 843 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR--------------TFPD 843 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc--------------cccc
Confidence 34444444444444444444455555555555544444444433 34455555555544322 0111
Q ss_pred CCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCccccc
Q 042863 582 TRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCPALSD 649 (680)
Q Consensus 582 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~~l~~ 649 (680)
..++|+.|+++++ .++.+|.++ ..+++|+.|++++|+.++.++. .+++|+.+++++|++++.
T Consensus 844 ~~~nL~~L~Ls~n-~i~~iP~si-----~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 844 ISTNISDLNLSRT-GIEEVPWWI-----EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cccccCEeECCCC-CCccChHHH-----hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 2346777777765 466677554 4899999999999999998875 466788889999988764
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=7.8e-20 Score=182.61 Aligned_cols=314 Identities=19% Similarity=0.198 Sum_probs=193.5
Q ss_pred CCCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccc-ccccC
Q 042863 350 SQSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALP-KEIGN 428 (680)
Q Consensus 350 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~ 428 (680)
+...|..++.+.+.++.++..++. +|-++++|+.+++..|. -..++.......+|+.|+|.+|.|+++. +.++.
T Consensus 73 ~g~lp~~t~~LdlsnNkl~~id~~-~f~nl~nLq~v~l~~N~----Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 73 KGFLPSQTQTLDLSNNKLSHIDFE-FFYNLPNLQEVNLNKNE----LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred CCcCccceeeeeccccccccCcHH-HHhcCCcceeeeeccch----hhhcccccccccceeEEeeeccccccccHHHHHh
Confidence 456677888889888877766654 47888999999988874 2333343444556888888888887654 45677
Q ss_pred cCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccccc-ccCcccccceee
Q 042863 429 LKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDS-GIGCLVSLRCLI 507 (680)
Q Consensus 429 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~ 507 (680)
++.|+.|||+.|...+.--..+..-.++++|+|++|.+..--...+..+.+|..|.++.|+++.+|. .|.++++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 7888888888774333222334455677888888776655445556677777777787777777743 455577777777
Q ss_pred cccccCcccc-hhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCcccccccc-------------ccCC
Q 042863 508 ISHCRNLEYL-FDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQ-------------LEGE 573 (680)
Q Consensus 508 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~ 573 (680)
+..|. ++.+ ...+.++++|+.|.+..|.+..---..|..|.++++|+|..|....++..+- ....
T Consensus 228 LnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 228 LNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred ccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 76654 2222 2344455555555555554433222333344444444444443222211100 0011
Q ss_pred CCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc----CCCCCCeEEEcCCccccc
Q 042863 574 GSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE----DMLHLKTLRIRGCPALSD 649 (680)
Q Consensus 574 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~L~~l~l~~c~~l~~ 649 (680)
.........+++|+.|++++|. ++.++. ..+..+..|++|.|++|. +..+.+ ++.+|++|++++++ ++.
T Consensus 307 rih~d~WsftqkL~~LdLs~N~-i~~l~~----~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~-ls~ 379 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNR-ITRLDE----GSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNE-LSW 379 (873)
T ss_pred eeecchhhhcccceeEeccccc-cccCCh----hHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCe-EEE
Confidence 1223345567788888888774 566664 344577777788887775 444443 57788888888873 444
Q ss_pred ccCCCCCCCCccccccceeEecCccccc
Q 042863 650 RCKPLTGEDWHKIAHVAHIKLDDEIIKS 677 (680)
Q Consensus 650 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 677 (680)
.++. ....+..+++++.+.+.++.+|.
T Consensus 380 ~IED-aa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 380 CIED-AAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred EEec-chhhhccchhhhheeecCceeee
Confidence 4444 33567778888888888887764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=3.3e-20 Score=185.20 Aligned_cols=158 Identities=22% Similarity=0.126 Sum_probs=72.3
Q ss_pred hhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 402 CISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
+|.++.+|..|.|+.|.++.+|. .|+++++|+.|+|..|..-..--..|.++++|+.|.+..|....--...+..+.++
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 34444455555555555554443 33345555555555443211112224444445555444443332222334445555
Q ss_pred cEEEecccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCC
Q 042863 481 RVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 481 ~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
++|++..|++... ...+.+++.|+.|++++|...+--++....+++|+.|+|++|.+..--+..+..+..|++|.|++|
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 5555555555444 334445555555555554433333344444555555555555544333334444444444444444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=5.3e-20 Score=184.99 Aligned_cols=268 Identities=20% Similarity=0.256 Sum_probs=195.3
Q ss_pred CCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcc
Q 042863 354 PKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMR 433 (680)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~ 433 (680)
.+-++.+.+.++..+...+|.....|+.++.|.|... ....++.-++.|.+|+.|++++|++..+...++.+|.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt----~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT----KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh----hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 3467888999999888889988899999999998764 344556668899999999999999999999999999999
Q ss_pred eeccccccCC-CccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccc-cCcccccceeecccc
Q 042863 434 YLDLSRNYKI-KKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSG-IGCLVSLRCLIISHC 511 (680)
Q Consensus 434 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~ 511 (680)
.+++++|+.- ..+|..+..+..|..|+|+.| .+.+.|.++..-.++-.|++++|++..+|.. +-++.-|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999988653 457888889999999999997 5778999999889999999999999888654 457788888899885
Q ss_pred cCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceec
Q 042863 512 RNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLI 591 (680)
Q Consensus 512 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 591 (680)
. +..+|+.+..+.+|+.|+|++|++..---..+-.+++|.+|.+++-. .....++.....+.+|..+++
T Consensus 161 r-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq----------RTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 161 R-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ----------RTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred h-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc----------chhhcCCCchhhhhhhhhccc
Confidence 5 78888888888999999999887632111112234555555555421 112233444455566666666
Q ss_pred ccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCC---cCCCCCCeEEEcCC
Q 042863 592 GQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP---EDMLHLKTLRIRGC 644 (680)
Q Consensus 592 ~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~---~~~~~L~~l~l~~c 644 (680)
+.| .+..+|+.+. .+++|+.|+||+|. ++.+. ..+.+|++|+++.+
T Consensus 230 S~N-~Lp~vPecly-----~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 230 SEN-NLPIVPECLY-----KLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred ccc-CCCcchHHHh-----hhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc
Confidence 665 4666665555 66666666666664 33222 23445666665554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=7.8e-20 Score=183.77 Aligned_cols=254 Identities=22% Similarity=0.240 Sum_probs=187.7
Q ss_pred hHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhc
Q 042863 372 FSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAIC 451 (680)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 451 (680)
.|..+..-+++-+|+||+|. ...++.+.+.++..|-+|||++|.+..+|+-+..+.+|+.|.|++|+..-..-.-+.
T Consensus 118 vP~~LE~AKn~iVLNLS~N~---IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNN---IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred cchhhhhhcCcEEEEcccCc---cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc
Confidence 45566677888899999886 455566677888899999999999999999999999999999999865432222344
Q ss_pred CCCCCcEEecCCccc-cccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCccccee
Q 042863 452 ELQSLQTLNLEECLE-LEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSL 530 (680)
Q Consensus 452 ~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 530 (680)
++.+|++|.+++++. +..+|..+..+.||+.++++.|++...|..+.++++|+.|++++|. ++.+....+...+|+.|
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETL 273 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhh
Confidence 577888888887644 3568999999999999999999999999889999999999999976 55555556666788888
Q ss_pred ecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcc
Q 042863 531 LIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLR 610 (680)
Q Consensus 531 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 610 (680)
+++.|. +..+|..+.++++|+.|.+.+|. +. .+.++...+.+.+|+.+...+| +++-+|..+.
T Consensus 274 NlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk-L~---------FeGiPSGIGKL~~Levf~aanN-~LElVPEglc----- 336 (1255)
T KOG0444|consen 274 NLSRNQ-LTVLPDAVCKLTKLTKLYANNNK-LT---------FEGIPSGIGKLIQLEVFHAANN-KLELVPEGLC----- 336 (1255)
T ss_pred ccccch-hccchHHHhhhHHHHHHHhccCc-cc---------ccCCccchhhhhhhHHHHhhcc-ccccCchhhh-----
Confidence 888876 45677778888888888776653 22 3345555666666777776665 4666665544
Q ss_pred cCCccceeeeccCCCCCCCCcC---CCCCCeEEEcCCccc
Q 042863 611 NFQALEGLVIGNCPKLLSLPED---MLHLKTLRIRGCPAL 647 (680)
Q Consensus 611 ~~~~L~~L~l~~~~~~~~l~~~---~~~L~~l~l~~c~~l 647 (680)
.|++|++|.|+.|. +..+|++ ++.|+.|++..+|++
T Consensus 337 RC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCc
Confidence 77777777777665 4445653 456677777777665
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=7.9e-17 Score=154.37 Aligned_cols=126 Identities=25% Similarity=0.343 Sum_probs=93.0
Q ss_pred cCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhc-CCCCCc
Q 042863 379 LGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAIC-ELQSLQ 457 (680)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~ 457 (680)
++.|+.++...|. -..++.-++++..|..|+|..|.+..+| +|.+|..|.+|.+..| .++.+|.... .+++|.
T Consensus 182 m~~L~~ld~~~N~----L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 182 MKRLKHLDCNSNL----LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLL 255 (565)
T ss_pred HHHHHhcccchhh----hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccce
Confidence 6667777766552 3344445777788888888888887777 6777778888887766 4666676655 677888
Q ss_pred EEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeeccccc
Q 042863 458 TLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 458 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (680)
+||+.+| .+++.|.+++.+.+|..|++++|.++..|..++++ .|+.|.+.+|.
T Consensus 256 vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 256 VLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 8888886 46678888888888888888888888888777777 77777777764
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=1.7e-17 Score=158.93 Aligned_cols=220 Identities=26% Similarity=0.309 Sum_probs=127.3
Q ss_pred hhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCccc
Q 042863 402 CISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLR 481 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 481 (680)
.++.+..+..++.++|+++.+|+.+.+++.|..|+.++|. ...+|+.++.+-.|..|+..+| ....+|+.+.++.+|.
T Consensus 86 aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLS 163 (565)
T ss_pred HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHH
Confidence 3444445555555555555555555555555555555442 3333444444545555544443 2334455555555555
Q ss_pred EEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCC
Q 042863 482 VFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECES 561 (680)
Q Consensus 482 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 561 (680)
.+++.+|++...++..-.++.|++|+..+| .++.+|+.++.+.+|..|++..|++ ..+| .|..|+.|++|+++.|..
T Consensus 164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred HhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHH
Confidence 555555555554444334555555555442 3555666666666666666666553 2334 455666666666655431
Q ss_pred ccccccccccCCCCcC-cccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCCC--CCCe
Q 042863 562 LSLNLSMQLEGEGSHQ-ASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDML--HLKT 638 (680)
Q Consensus 562 ~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~--~L~~ 638 (680)
+.++ ..+.++++|..|++..+ +++++|+.+. -+.+|+.||+++|. ++.+|-.+. +|+.
T Consensus 241 ------------~~lpae~~~~L~~l~vLDLRdN-klke~Pde~c-----lLrsL~rLDlSNN~-is~Lp~sLgnlhL~~ 301 (565)
T KOG0472|consen 241 ------------EMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEIC-----LLRSLERLDLSNND-ISSLPYSLGNLHLKF 301 (565)
T ss_pred ------------HhhHHHHhcccccceeeecccc-ccccCchHHH-----HhhhhhhhcccCCc-cccCCcccccceeee
Confidence 1222 23457889999999998 5899998776 67889999999875 667776544 6777
Q ss_pred EEEcCCc
Q 042863 639 LRIRGCP 645 (680)
Q Consensus 639 l~l~~c~ 645 (680)
|.+.|+|
T Consensus 302 L~leGNP 308 (565)
T KOG0472|consen 302 LALEGNP 308 (565)
T ss_pred hhhcCCc
Confidence 7778876
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.57 E-value=2.3e-13 Score=159.26 Aligned_cols=280 Identities=13% Similarity=0.146 Sum_probs=172.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCC-------------Cc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQG-------------DL 89 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-------------~~ 89 (680)
...+++.|+||+|.||||++.++++ .. +.+.|+++.... ++..++..++..+...... ..
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~--~~----~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAA--GK----NNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYA 103 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH--hC----CCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcC
Confidence 4568999999999999999999885 21 258899987544 5556666676666421111 01
Q ss_pred CHHHHHHHH-HHHhC-CceEEEEEecCCCCChhHHH-HHHHhcCCCCCCCEEEEecCchHHHHhhccCCCCCceeCC---
Q 042863 90 DIEQLQRIL-RVCLN-GKRYLLVMDDVWNEDPKVWD-KLKSLLSGGAKGSKILVTTRSNKVASVMGTRGGTTGYNLQ--- 163 (680)
Q Consensus 90 ~~~~~~~~~-~~~l~-~~~~llvlD~~~~~~~~~~~-~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~~~~~~~~l~--- 163 (680)
+...+...+ ..... +++++||+||+++.+..... .+..++...+.+.++|||||...-..............+.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~ 183 (903)
T PRK04841 104 SLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQ 183 (903)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHh
Confidence 222233222 22223 67899999999986654444 5566666667678899999984211111100011234444
Q ss_pred -CCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHHHhhhhccccc-ccccc
Q 042863 164 -GLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYVRDNEIWKLEQ-KANDI 241 (680)
Q Consensus 164 -~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l 241 (680)
+|+.+|+.++|....+.. .+ .+.+.+|++.|+|+|+++..++..+....... .... ..... ....+
T Consensus 184 l~f~~~e~~~ll~~~~~~~---~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~----~~~~~~~~~~~ 251 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSP---IE---AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSA----RRLAGINASHL 251 (903)
T ss_pred CCCCHHHHHHHHHhccCCC---CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhh----HhhcCCCchhH
Confidence 999999999998765332 12 25668999999999999999887765332100 0000 01111 12235
Q ss_pred hhhH-hccccCCcHHHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHHHHHHHHHHhCCcccccccCc
Q 042863 242 LPVL-RFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIGMRSLKQLCSRSFFHDLVRGF 320 (680)
Q Consensus 242 ~~~~-~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~ 320 (680)
...+ ...++.|+++.++++..+++++ .+... +.. .+.+ .+.....+..|.+.+++.....+
T Consensus 252 ~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~---l~~-----~l~~--------~~~~~~~L~~l~~~~l~~~~~~~- 313 (903)
T PRK04841 252 SDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDA---LIV-----RVTG--------EENGQMRLEELERQGLFIQRMDD- 313 (903)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHH---HHH-----HHcC--------CCcHHHHHHHHHHCCCeeEeecC-
Confidence 5543 3348899999999999999985 33311 111 1111 11235678899999986532221
Q ss_pred cEeEEEEcHHHHHHHHHhh
Q 042863 321 EMFTFKMHDLIHDLAQLVA 339 (680)
Q Consensus 321 ~~~~~~~H~li~~~~~~~~ 339 (680)
...+|++|++++++.+...
T Consensus 314 ~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 314 SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCCEEehhHHHHHHHHHHH
Confidence 2236889999999987665
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.4e-16 Score=132.59 Aligned_cols=152 Identities=27% Similarity=0.389 Sum_probs=93.9
Q ss_pred cCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEE
Q 042863 405 KSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFE 484 (680)
Q Consensus 405 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 484 (680)
.+.+++.|.|++|.++.+|+.+..+.+|+.|++.+| .++.+|..++++++|+.|+++.| .+..+|.+++.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 445566666666666666666666666666666655 35566666666666666666655 3445666666666666666
Q ss_pred eccccccc--cccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 485 VTTKQKSL--QDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 485 l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
+++|++.. .|..+..+..|+.|+++.|. ++-+|+.++.+++|+.|.+..|.+. .+|..++.++.|++|.+++|+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 66665543 25555556666666666543 4556666666666666666666533 455666666666666666653
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=4.7e-15 Score=151.52 Aligned_cols=260 Identities=17% Similarity=0.060 Sum_probs=161.9
Q ss_pred EEEeccCcchhhhHHHhhhcCCccEEEEecCCccc-chHHHHHhhccCcceeEEEeCCCCccc-------ccccccCcCC
Q 042863 360 LSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKV-SQSFVRSCISKSQFLRVLNLSGSAIEA-------LPKEIGNLKH 431 (680)
Q Consensus 360 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-------~~~~~~~l~~ 431 (680)
+.+.+.......+...+..++.|+.|+++++.... ....+...+...+.|+.|+++++.+.. ++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 45555566666777888888889999998876322 123345567788889999998887652 2334566788
Q ss_pred cceeccccccCCCccChhhcCCCC---CcEEecCCccccc----cCccccccc-CcccEEEecccccccc-----ccccC
Q 042863 432 MRYLDLSRNYKIKKLPNAICELQS---LQTLNLEECLELE----ELPKDIRYL-VSLRVFEVTTKQKSLQ-----DSGIG 498 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~-----~~~l~ 498 (680)
|+.|++++|.+....+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++.. ...+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 999999888766555554544444 8888888886542 223344555 7888888888887622 33455
Q ss_pred cccccceeecccccCcc----cchhhccCCcccceeecccccCcc----cCCccCCCCCCcCeEeecCCCCccccccccc
Q 042863 499 CLVSLRCLIISHCRNLE----YLFDDIDQLRVLRSLLIAGCPCLI----SLPPAMRYLSSLETLMFVECESLSLNLSMQL 570 (680)
Q Consensus 499 ~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 570 (680)
.+++|+.|++++|.... .++..+..+++|+.|++++|.+.. .++..+..+++|++|++++|..-... ...
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~-~~~- 240 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG-AAA- 240 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH-HHH-
Confidence 56778888888876432 234445556788888888876542 23445667788888888887421100 000
Q ss_pred cCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCC
Q 042863 571 EGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKL 626 (680)
Q Consensus 571 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 626 (680)
.........+.|++|++.+|. ++..........+..+++|+.+++++|..-
T Consensus 241 ----l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 241 ----LASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred ----HHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 000011124678888887774 332111111233456677888888877643
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=2.8e-16 Score=133.10 Aligned_cols=163 Identities=28% Similarity=0.425 Sum_probs=139.7
Q ss_pred hcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCc
Q 042863 378 DLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQ 457 (680)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 457 (680)
++++...|-++.|.. ..++.-+..+.+|++|++.+|.+..+|.+++++++|+.|++.-| .+..+|..|+++|.|+
T Consensus 31 ~~s~ITrLtLSHNKl----~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL----TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCce----eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 456666777887743 33445578899999999999999999999999999999999977 5778899999999999
Q ss_pred EEecCCccccc-cCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeeccccc
Q 042863 458 TLNLEECLELE-ELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 458 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 536 (680)
+|++.+|+... .+|..+..+..|+.|+++.|.+...|+.++++++|+.|.+..|. +-++|..++.++.|+.|++.+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccce
Confidence 99999887654 58999999999999999999999999999999999999999866 55689999999999999999987
Q ss_pred CcccCCccCCC
Q 042863 537 CLISLPPAMRY 547 (680)
Q Consensus 537 ~~~~~~~~~~~ 547 (680)
+ ..+|+.+++
T Consensus 185 l-~vlppel~~ 194 (264)
T KOG0617|consen 185 L-TVLPPELAN 194 (264)
T ss_pred e-eecChhhhh
Confidence 5 455655544
No 17
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.1e-11 Score=130.20 Aligned_cols=297 Identities=12% Similarity=0.072 Sum_probs=174.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+||++|++++...+.... .+..+..+.|+|++|+|||++++.+++........-.++|+++....+...++..++.+
T Consensus 32 l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 32 LPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 6899999999999996632 13445678999999999999999999843222212346788888777888889999998
Q ss_pred hcCCC--CCCcCHHHHHHHHHHHhC--CceEEEEEecCCCCC----hhHHHHHHHhcCCCCC-CCEEEEecCchHHHHhh
Q 042863 81 ITGQN--QGDLDIEQLQRILRVCLN--GKRYLLVMDDVWNED----PKVWDKLKSLLSGGAK-GSKILVTTRSNKVASVM 151 (680)
Q Consensus 81 l~~~~--~~~~~~~~~~~~~~~~l~--~~~~llvlD~~~~~~----~~~~~~l~~~l~~~~~-~~~iiiTsR~~~~~~~~ 151 (680)
+.... ....+.+++...+.+.++ +++.+||+|+++... ...+..+...+..... ...+|.++....+....
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 86522 223356666666666654 457899999996632 2233344333333221 33355555554332221
Q ss_pred ----ccCCCCCceeCCCCChhhHHHHHHHHhccc--CCCCCchHHHHHHHHHHhh----CCChhHHHHHHhhhc----cC
Q 042863 152 ----GTRGGTTGYNLQGLPLEDCLSLFMKCAFKE--ERDKHPNLVKIGEEIVKKC----GGIPLAVRTLGSLLY----CS 217 (680)
Q Consensus 152 ----~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~----~g~Pl~l~~~~~~l~----~~ 217 (680)
...-....+.+++++.++..++++.++... ....+ +++++.+++.+ |..+.++..+-.+.. ..
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~---~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD---DEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC---HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 111123568999999999999999887432 11112 23334444444 446666655543221 01
Q ss_pred ---CChhhHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCCC--CeeechHHHHHH--HHHcCCCCCC
Q 042863 218 ---TDEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFPK--DYQFSSVYLVQF--WMAQGLLHPL 290 (680)
Q Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~--~~~~~~~~l~~~--w~~~g~~~~~ 290 (680)
-+......+.... -...+...+..|+..++.++..++...+ ...+....+... .++...
T Consensus 267 ~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~---- 332 (394)
T PRK00411 267 SRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL---- 332 (394)
T ss_pred CCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc----
Confidence 1222332222211 1223455688999999998888775432 123343343322 111111
Q ss_pred CCCCchhHHHHHHHHHHHhCCccccc
Q 042863 291 NENDELDDIGMRSLKQLCSRSFFHDL 316 (680)
Q Consensus 291 ~~~~~~~~~~~~~l~~L~~~sll~~~ 316 (680)
...........+++..|...|++...
T Consensus 333 ~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 11111335567789999999998854
No 18
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.48 E-value=2.4e-13 Score=132.12 Aligned_cols=197 Identities=22% Similarity=0.233 Sum_probs=105.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHH----
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTK---- 76 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (680)
|+||++|++.|.+.+.. +....++|+|+.|+|||+|++++.+ ...+....++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~------~~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------GPSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------hcCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 89999999999999976 3356899999999999999999998 43332224555555443322211111
Q ss_pred -----HHHHhc---CCCC-------C----CcCHHHHHHHHHHHhCCceEEEEEecCCCCC------hhHHHHHHHhcCC
Q 042863 77 -----IIKSIT---GQNQ-------G----DLDIEQLQRILRVCLNGKRYLLVMDDVWNED------PKVWDKLKSLLSG 131 (680)
Q Consensus 77 -----~~~~l~---~~~~-------~----~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~------~~~~~~l~~~l~~ 131 (680)
+...+. .... . ......+.+.+.+ .+++++||+||++... ..-...+..++..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 111121 1100 1 1122233333332 2345999999997644 2223344444444
Q ss_pred ---CCCCCEEEEecCchHHHHh-----hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 132 ---GAKGSKILVTTRSNKVASV-----MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 132 ---~~~~~~iiiTsR~~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
....+.|+++|. ..+... .........+.+++|+.+++.+++...+... ... +..++..++|+..+||+
T Consensus 151 ~~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCC
Confidence 333344444444 333322 1112334559999999999999999976444 211 23456679999999999
Q ss_pred hhHHHHH
Q 042863 204 PLAVRTL 210 (680)
Q Consensus 204 Pl~l~~~ 210 (680)
|..|..+
T Consensus 228 P~~l~~~ 234 (234)
T PF01637_consen 228 PRYLQEL 234 (234)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9988753
No 19
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.45 E-value=2.4e-12 Score=144.47 Aligned_cols=313 Identities=15% Similarity=0.187 Sum_probs=190.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEE---EEEeCCcCC---HHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKI---WICISEDFG---ERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~ 74 (680)
++||+.|++.+.+.+.+.. .+...++.|.|.+|||||++++++.. .+.+.+...+ +-....... ..+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 5899999999999999844 55667999999999999999999988 4444321111 111222111 12334
Q ss_pred HHHHHHhcCC-------------------C---------------CCC-------cCHH-----HHHHHHHHHh-CCceE
Q 042863 75 TKIIKSITGQ-------------------N---------------QGD-------LDIE-----QLQRILRVCL-NGKRY 107 (680)
Q Consensus 75 ~~~~~~l~~~-------------------~---------------~~~-------~~~~-----~~~~~~~~~l-~~~~~ 107 (680)
+++..++... . .++ .... .....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 4444433211 0 000 0001 1122222233 44589
Q ss_pred EEEEecCCCCChhHHHHHHHhcCCCCC------CCEEEEecCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhccc
Q 042863 108 LLVMDDVWNEDPKVWDKLKSLLSGGAK------GSKILVTTRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKE 181 (680)
Q Consensus 108 llvlD~~~~~~~~~~~~l~~~l~~~~~------~~~iiiTsR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 181 (680)
++|+||++|.|+.+++.+..++..... ....+.|.+ ..+............+.+.||+..+...+.....+..
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~-~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR-PTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCcc-chhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999999999998887777665531 111222333 2233444444555789999999999999999988664
Q ss_pred CCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccC------CChhhHHHHHhhhhcccccccccchhhHhccccCCcHH
Q 042863 182 ERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCS------TDEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPR 255 (680)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~ 255 (680)
..... +....|++++.|+|+++..+.+.+... .+...|..-. .........+.+...+....++||+.
T Consensus 236 ~~~~~----p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~--~~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 236 KLLPA----PLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSI--ASLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred ccccc----hHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccH--HhcCCchhhHHHHHHHHHHHhcCCHH
Confidence 34333 556799999999999999999998753 2444443211 01111122233556789999999999
Q ss_pred HHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHHHHHHHHHHhCCccccc-----ccCccEe-EEEEcH
Q 042863 256 LKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIGMRSLKQLCSRSFFHDL-----VRGFEMF-TFKMHD 329 (680)
Q Consensus 256 ~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~-----~~~~~~~-~~~~H~ 329 (680)
.|+++...+++...++.+ .+...+. ..........++.|....++... ..+.... .-..|+
T Consensus 310 t~~Vl~~AA~iG~~F~l~--~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 310 TREVLKAAACIGNRFDLD--TLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHhCccCCHH--HHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 999999999998776644 3332221 12233444555566655555421 1111111 115688
Q ss_pred HHHHHHHHh
Q 042863 330 LIHDLAQLV 338 (680)
Q Consensus 330 li~~~~~~~ 338 (680)
.+++.+-..
T Consensus 377 ~vqqaaY~~ 385 (849)
T COG3899 377 RVQQAAYNL 385 (849)
T ss_pred HHHHHHhcc
Confidence 888776443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=9.7e-15 Score=149.20 Aligned_cols=265 Identities=18% Similarity=0.143 Sum_probs=177.4
Q ss_pred HHhhccCcceeEEEeCCCCcc-----cccccccCcCCcceeccccccCCC------ccChhhcCCCCCcEEecCCccccc
Q 042863 400 RSCISKSQFLRVLNLSGSAIE-----ALPKEIGNLKHMRYLDLSRNYKIK------KLPNAICELQSLQTLNLEECLELE 468 (680)
Q Consensus 400 ~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~ 468 (680)
...+..+..|+.|+++++.++ .++..+...++|++|+++++.... .++..+..+++|+.|++++|....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345667778999999999985 355667788899999999885441 234456778999999999998776
Q ss_pred cCcccccccCc---ccEEEecccccccc-----ccccCcc-cccceeecccccCcc----cchhhccCCcccceeecccc
Q 042863 469 ELPKDIRYLVS---LRVFEVTTKQKSLQ-----DSGIGCL-VSLRCLIISHCRNLE----YLFDDIDQLRVLRSLLIAGC 535 (680)
Q Consensus 469 ~~~~~~~~l~~---L~~L~l~~~~~~~~-----~~~l~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~ 535 (680)
..+..+..+.+ |++|++++|+++.. ...+..+ ++|+.|++++|.... .++..+..+++|+.|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 66666655555 99999999988732 2334556 899999999987542 34455667789999999999
Q ss_pred cCcc----cCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCccc-chhhhhhhcc
Q 042863 536 PCLI----SLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLEL-PQWLLQESLR 610 (680)
Q Consensus 536 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~ 610 (680)
.+.+ .++..+..+++|++|++++|..-... ...+......+++|+.|++++|+ ++.. ...+......
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~ 247 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG-------ASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS 247 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHH-------HHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc
Confidence 8763 23444556689999999998532111 11122334567899999999985 4332 1111111112
Q ss_pred cCCccceeeeccCCCCC----CC---CcCCCCCCeEEEcCCcccccccCCCCCCCCccc-cccceeEecCc
Q 042863 611 NFQALEGLVIGNCPKLL----SL---PEDMLHLKTLRIRGCPALSDRCKPLTGEDWHKI-AHVAHIKLDDE 673 (680)
Q Consensus 611 ~~~~L~~L~l~~~~~~~----~l---~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~ 673 (680)
..+.|++|++++|.... .+ ...+++|+.+++++|..-.+.+.... ..+..- .++..+.+.+.
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA-ESLLEPGNELESLWVKDD 317 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH-HHHhhcCCchhhcccCCC
Confidence 35899999999996531 12 23457899999999965444322221 122222 45555555443
No 21
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=6.9e-11 Score=122.81 Aligned_cols=302 Identities=13% Similarity=0.072 Sum_probs=172.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh-hcC---CcEEEEEeCCcCCHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE-EHF---ELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 76 (680)
|+||++|+++|...+.... .++.+..+.|+|++|+|||++++.+++..... ... -.++|+++....+...++..
T Consensus 17 l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 6899999999999997533 12445679999999999999999998742211 111 24678888887788889999
Q ss_pred HHHHhc---CCCC-CCcCHHHHHHHHHHHh--CCceEEEEEecCCCCC---hhHHHHHHHh--cCCCC-CCCEEEEecCc
Q 042863 77 IIKSIT---GQNQ-GDLDIEQLQRILRVCL--NGKRYLLVMDDVWNED---PKVWDKLKSL--LSGGA-KGSKILVTTRS 144 (680)
Q Consensus 77 ~~~~l~---~~~~-~~~~~~~~~~~~~~~l--~~~~~llvlD~~~~~~---~~~~~~l~~~--l~~~~-~~~~iiiTsR~ 144 (680)
++.++. ...+ ...+.++....+.+.+ .+++++||+|+++... ...+..+... ..... ....+|.+++.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999884 2211 2234455555555554 3567899999996641 1112223222 11111 23445555554
Q ss_pred hHHHHhhc----cCCCCCceeCCCCChhhHHHHHHHHhccc--CCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhc---
Q 042863 145 NKVASVMG----TRGGTTGYNLQGLPLEDCLSLFMKCAFKE--ERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLY--- 215 (680)
Q Consensus 145 ~~~~~~~~----~~~~~~~~~l~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~--- 215 (680)
........ ..-....+.+++++.+|..++++.++... .....+...+.+..++..+.|.|..+..+.....
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43322111 11112468899999999999999887421 1112233334455677777888864433322111
Q ss_pred --cC---CChhhHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCC--CCeeechHHHHHHH-HHcCCC
Q 042863 216 --CS---TDEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFP--KDYQFSSVYLVQFW-MAQGLL 287 (680)
Q Consensus 216 --~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~--~~~~~~~~~l~~~w-~~~g~~ 287 (680)
.. -..+......... -.....-.+..|+.+++.++..++... ++..+....+...+ .....+
T Consensus 255 ~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~ 324 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI 324 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc
Confidence 01 1122222111110 112334566788888887777765332 22334444444321 111111
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCCcccccc
Q 042863 288 HPLNENDELDDIGMRSLKQLCSRSFFHDLV 317 (680)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 317 (680)
. ...........++..|...|++....
T Consensus 325 ~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 325 G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1 12234577888899999999998643
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=6.2e-13 Score=146.26 Aligned_cols=136 Identities=20% Similarity=0.269 Sum_probs=60.1
Q ss_pred ceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecc
Q 042863 408 FLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTT 487 (680)
Q Consensus 408 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 487 (680)
+|+.|++++|.++.+|..+. ++|+.|++++|. +..+|..+. .+|+.|++++|.+ ..+|..+. .+|+.|++++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCC
Confidence 45555555555554444322 245555555553 224444332 2455555554432 23444332 2455555555
Q ss_pred ccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCC
Q 042863 488 KQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 488 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
|.++.+|..+. ++|+.|++++|. ++.+|..+ .++|+.|++++|.+. .+|..+ +++|+.|++++|
T Consensus 293 N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N 356 (754)
T PRK15370 293 NSIRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKN 356 (754)
T ss_pred CccccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCC
Confidence 55544433221 245555555433 22333222 234555555555432 233322 245555555554
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.3e-12 Score=142.86 Aligned_cols=234 Identities=21% Similarity=0.153 Sum_probs=147.2
Q ss_pred CCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcc
Q 042863 354 PKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMR 433 (680)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~ 433 (680)
+.+++.+.+..+++.. ++. ..++|+.|++++|..... +. ..++|+.|++++|.++.+|..+ .+|+
T Consensus 221 ~~~L~~L~L~~N~Lt~--LP~---lp~~Lk~LdLs~N~LtsL----P~---lp~sL~~L~Ls~N~L~~Lp~lp---~~L~ 285 (788)
T PRK15387 221 PAHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTSL----PV---LPPGLLELSIFSNPLTHLPALP---SGLC 285 (788)
T ss_pred hcCCCEEEccCCcCCC--CCC---CCCCCcEEEecCCccCcc----cC---cccccceeeccCCchhhhhhch---hhcC
Confidence 3456677776655442 221 246777777777653211 11 2357777777777777666533 4566
Q ss_pred eeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccC
Q 042863 434 YLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRN 513 (680)
Q Consensus 434 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 513 (680)
.|++++|. +..+|. ..++|+.|++++|.+ ..+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|.
T Consensus 286 ~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L-~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~- 353 (788)
T PRK15387 286 KLWIFGNQ-LTSLPV---LPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ- 353 (788)
T ss_pred EEECcCCc-cccccc---cccccceeECCCCcc-ccCCCC---cccccccccccCcccccccc---ccccceEecCCCc-
Confidence 77777774 445554 246788888887743 345542 23567777777777766531 2478888888765
Q ss_pred cccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceeccc
Q 042863 514 LEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQ 593 (680)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 593 (680)
++.+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|.... ++. .+++|+.|++++
T Consensus 354 Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~------------LP~---l~s~L~~LdLS~ 411 (788)
T PRK15387 354 LASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS------------LPV---LPSELKELMVSG 411 (788)
T ss_pred cCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC------------CCC---cccCCCEEEccC
Confidence 4556543 356777788877654 45543 3578888888874221 111 235788888888
Q ss_pred ccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCcc
Q 042863 594 VTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCPA 646 (680)
Q Consensus 594 ~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~~ 646 (680)
|. +..+|. .+.+|+.|++++|. ++.+|. .+++|+.|++++++.
T Consensus 412 N~-LssIP~--------l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 412 NR-LTSLPM--------LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred Cc-CCCCCc--------chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 85 666774 23467888888876 567776 366888888888863
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.41 E-value=2.6e-11 Score=128.61 Aligned_cols=295 Identities=17% Similarity=0.200 Sum_probs=184.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCC
Q 042863 9 EKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQG 87 (680)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 87 (680)
.++...|.+ ....|.+.|..|+|.||||++.+++. + ...-..+.|.++++.. ++...+..++..+..-.+.
T Consensus 25 ~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 344555543 34679999999999999999999975 2 2334579999988754 5567777777777633222
Q ss_pred C-------------cCHHHHHHHHHHHh--CCceEEEEEecCCCCCh-hHHHHHHHhcCCCCCCCEEEEecCchHHHHhh
Q 042863 88 D-------------LDIEQLQRILRVCL--NGKRYLLVMDDVWNEDP-KVWDKLKSLLSGGAKGSKILVTTRSNKVASVM 151 (680)
Q Consensus 88 ~-------------~~~~~~~~~~~~~l--~~~~~llvlD~~~~~~~-~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~ 151 (680)
. .+...+.+.+...+ -.++..+|+||.+-... ..-..+..++.+.+.+..+|+|||++.-....
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 2 22233333333322 24578999999977433 33344566666778889999999988543333
Q ss_pred ccCCCCCceeCC----CCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHHH
Q 042863 152 GTRGGTTGYNLQ----GLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYVR 227 (680)
Q Consensus 152 ~~~~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~ 227 (680)
...-+...+++. .|+.+|+.++|....+.. -....+..+++.++|.+-|+..++=.++.+.+......
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~-- 248 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR-- 248 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh--
Confidence 322222333333 689999999998876222 12255689999999999999999877763332211111
Q ss_pred hhhhcccccccccch-hhHhccccCCcHHHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHHHHHHHH
Q 042863 228 DNEIWKLEQKANDIL-PVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIGMRSLKQ 306 (680)
Q Consensus 228 ~~~~~~~~~~~~~l~-~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~ 306 (680)
.+....+-+. -..+-.+++||++.|.++..++++..- . ..+... +.+ .+.+...++.
T Consensus 249 -----~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~-----Ltg--------~~ng~amLe~ 306 (894)
T COG2909 249 -----GLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNA-----LTG--------EENGQAMLEE 306 (894)
T ss_pred -----hccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHH-----Hhc--------CCcHHHHHHH
Confidence 0010001111 234557899999999999999997320 0 011111 111 1224456889
Q ss_pred HHhCCcccccccCccEeEEEEcHHHHHHHHHhhccc
Q 042863 307 LCSRSFFHDLVRGFEMFTFKMHDLIHDLAQLVAKGE 342 (680)
Q Consensus 307 L~~~sll~~~~~~~~~~~~~~H~li~~~~~~~~~~e 342 (680)
|.+++++-...++ ...+|++|.++.+|.+.....+
T Consensus 307 L~~~gLFl~~Ldd-~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 307 LERRGLFLQRLDD-EGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHhCCCceeeecC-CCceeehhHHHHHHHHhhhccc
Confidence 9999986633322 2238999999999988765543
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.40 E-value=1.7e-11 Score=123.81 Aligned_cols=261 Identities=16% Similarity=0.131 Sum_probs=143.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+||+++++.+..++.... .....+..+.++|++|+|||+||+.+++ .....+ .++....... ...+...+..
T Consensus 6 ~iG~~~~~~~l~~~l~~~~-~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~-~~~l~~~l~~ 78 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAK-MRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGPALEK-PGDLAAILTN 78 (305)
T ss_pred HcCHHHHHHHHHHHHHHHH-hcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccchhcC-chhHHHHHHh
Confidence 7999999999999886432 1234456789999999999999999988 333221 1222111111 1111122222
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCC-------------------CCCCCEEEEe
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSG-------------------GAKGSKILVT 141 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~-------------------~~~~~~iiiT 141 (680)
+ +...++++|+++.......+.+...+.. .++.+.|..|
T Consensus 79 ~----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 79 L----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred c----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 1 1234666666654333332223222211 1123344556
Q ss_pred cCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChh
Q 042863 142 TRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEH 221 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~ 221 (680)
++...+......+- ...+.+++++.++..+++.+.+.......+ ++.+..|++.|+|.|..+..++..+
T Consensus 137 ~~~~~l~~~l~sR~-~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~------- 205 (305)
T TIGR00635 137 TRAGMLTSPLRDRF-GIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV------- 205 (305)
T ss_pred CCccccCHHHHhhc-ceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH-------
Confidence 66543333222111 135789999999999999998865544433 3667899999999998776665433
Q ss_pred hHHHHHhhhhccc-ccccccchhhHhccccCCcHHHHHHHHH-hhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHH
Q 042863 222 DWEYVRDNEIWKL-EQKANDILPVLRFSYDQLPPRLKQCVAY-CCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDI 299 (680)
Q Consensus 222 ~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~L~~~~~~~~~~-~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~ 299 (680)
|........... ...-+.....+...+..+++.++..+.. ++.+..+ .++...+.... ......
T Consensus 206 -~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------------g~~~~~ 271 (305)
T TIGR00635 206 -RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------------GEDADT 271 (305)
T ss_pred -HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------------CCCcch
Confidence 211110000000 0000112222566788999988888874 4666443 34433332111 112233
Q ss_pred HHHHHH-HHHhCCcccc
Q 042863 300 GMRSLK-QLCSRSFFHD 315 (680)
Q Consensus 300 ~~~~l~-~L~~~sll~~ 315 (680)
....++ .|++.+++..
T Consensus 272 ~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 272 IEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHhhhHHHHHcCCccc
Confidence 445567 5999999874
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.39 E-value=1.9e-11 Score=124.04 Aligned_cols=263 Identities=17% Similarity=0.151 Sum_probs=146.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+||+++++.+...+.... ..+...+.+.++|++|+|||++|+.+++ ..... ..++.... ......+..++..
T Consensus 27 ~vG~~~~~~~l~~~l~~~~-~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~---~~~~~~~~-~~~~~~l~~~l~~ 99 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAK-KRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVN---IRITSGPA-LEKPGDLAAILTN 99 (328)
T ss_pred hcCcHHHHHHHHHHHHHHH-hcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCC---eEEEeccc-ccChHHHHHHHHh
Confidence 7999999999998886532 1234467899999999999999999988 33322 12222211 1111112222222
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-------------------CCCCEEEEe
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-------------------AKGSKILVT 141 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-------------------~~~~~iiiT 141 (680)
+ ....+|++|+++.......+.+...+... ++.+.|..|
T Consensus 100 l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 100 L----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred c----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 1 23346667777554332222222221111 112334556
Q ss_pred cCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChh
Q 042863 142 TRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEH 221 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~ 221 (680)
++...+......+. ...+.++++++++..+++.+.+.......++ +.+..|++.|+|.|..+..+...+.
T Consensus 158 ~~~~~l~~~L~sRf-~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~~------ 227 (328)
T PRK00080 158 TRAGLLTSPLRDRF-GIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRVR------ 227 (328)
T ss_pred CCcccCCHHHHHhc-CeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHHH------
Confidence 66443333222111 1357899999999999999988766554443 6779999999999986666655432
Q ss_pred hHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHH-HhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHH
Q 042863 222 DWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVA-YCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIG 300 (680)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~-~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~ 300 (680)
.|....... .-....-......+...+..|++..+..+. ....|..+ ++....+.... .......
T Consensus 228 ~~a~~~~~~-~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~ 293 (328)
T PRK00080 228 DFAQVKGDG-VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTI 293 (328)
T ss_pred HHHHHcCCC-CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchH
Confidence 111111000 000011122334567778899999888886 56666554 45544443221 1112233
Q ss_pred HHHHH-HHHhCCccccc
Q 042863 301 MRSLK-QLCSRSFFHDL 316 (680)
Q Consensus 301 ~~~l~-~L~~~sll~~~ 316 (680)
.+.++ .|++.++++..
T Consensus 294 ~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 294 EDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHhhHHHHHcCCcccC
Confidence 34455 88899998743
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.5e-12 Score=143.23 Aligned_cols=231 Identities=17% Similarity=0.232 Sum_probs=169.7
Q ss_pred CCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCc
Q 042863 353 IPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHM 432 (680)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L 432 (680)
.+..++.+.+.++.+.. ++..+ +++|+.|++++|.... + +..+ .++|+.|+|++|.+..+|..+. .+|
T Consensus 197 Ip~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~Lts---L-P~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L 264 (754)
T PRK15370 197 IPEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQLTS---I-PATL--PDTIQEMELSINRITELPERLP--SAL 264 (754)
T ss_pred cccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCcccc---C-Chhh--hccccEEECcCCccCcCChhHh--CCC
Confidence 45678889998887553 34333 3589999999886432 1 2222 2479999999999999887664 589
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeeccccc
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (680)
+.|++++|. +..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.++.+|..+ .++|+.|++++|.
T Consensus 265 ~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~ 336 (754)
T PRK15370 265 QSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENA 336 (754)
T ss_pred CEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCc
Confidence 999999885 456776553 589999999985 446776543 47999999999998876544 3689999999976
Q ss_pred CcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecc
Q 042863 513 NLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIG 592 (680)
Q Consensus 513 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 592 (680)
++.+|..+ +++|+.|++++|.+. .+|..+ .++|++|++++|.... ++... .++|+.|+++
T Consensus 337 -Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~------------LP~~l--~~sL~~LdLs 396 (754)
T PRK15370 337 -LTSLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN------------LPENL--PAALQIMQAS 396 (754)
T ss_pred -cccCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC------------CCHhH--HHHHHHHhhc
Confidence 56677654 379999999999764 566644 3689999999985322 11111 2479999999
Q ss_pred cccCCcccchhhhhhhcccCCccceeeeccCCC
Q 042863 593 QVTPLLELPQWLLQESLRNFQALEGLVIGNCPK 625 (680)
Q Consensus 593 ~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 625 (680)
+|. +..+|..+. .....++++..|++.+|+.
T Consensus 397 ~N~-L~~LP~sl~-~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 397 RNN-LVRLPESLP-HFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCC-cccCchhHH-HHhhcCCCccEEEeeCCCc
Confidence 984 778887654 3445678999999999985
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=1.9e-12 Score=141.52 Aligned_cols=225 Identities=20% Similarity=0.145 Sum_probs=163.6
Q ss_pred CCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCc
Q 042863 353 IPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHM 432 (680)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L 432 (680)
.+++++.|.+.++.+.. ++. ..++|+.|+++.|... .++. ....|+.|++++|.++.+|.. .++|
T Consensus 240 lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~L~----~Lp~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L 304 (788)
T PRK15387 240 LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLT----HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGL 304 (788)
T ss_pred CCCCCcEEEecCCccCc--ccC---cccccceeeccCCchh----hhhh---chhhcCEEECcCCcccccccc---cccc
Confidence 45688999999876553 232 2468999999887532 2222 235789999999999988763 4789
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeeccccc
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (680)
+.|++++|. +..+|.. ..+|+.|++++|.+ ..+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|.
T Consensus 305 ~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~ 373 (788)
T PRK15387 305 QELSVSDNQ-LASLPAL---PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR 373 (788)
T ss_pred ceeECCCCc-cccCCCC---cccccccccccCcc-cccccc---ccccceEecCCCccCCCCCC---Ccccceehhhccc
Confidence 999999995 4456652 23688899998754 457742 25799999999999987653 3578888998865
Q ss_pred CcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecc
Q 042863 513 NLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIG 592 (680)
Q Consensus 513 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 592 (680)
+..+|.. +.+|+.|++++|.+. .+|.. .++|+.|++++|...+ ++. .+.+|+.|+++
T Consensus 374 -L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss------------IP~---l~~~L~~L~Ls 430 (788)
T PRK15387 374 -LTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS------------LPM---LPSGLLSLSVY 430 (788)
T ss_pred -cccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC------------CCc---chhhhhhhhhc
Confidence 5567653 467999999999765 46653 3689999999985322 221 23578999999
Q ss_pred cccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcC
Q 042863 593 QVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPED 632 (680)
Q Consensus 593 ~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~ 632 (680)
+|. ++.+|..+. .+++|+.|++++|+.-...+..
T Consensus 431 ~Nq-Lt~LP~sl~-----~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 431 RNQ-LTRLPESLI-----HLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred cCc-ccccChHHh-----hccCCCeEECCCCCCCchHHHH
Confidence 985 788987654 8999999999999875554443
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=7.4e-14 Score=147.95 Aligned_cols=242 Identities=22% Similarity=0.234 Sum_probs=135.6
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTL 459 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 459 (680)
.+|+.++++.+. .... +..++.|.+|+.++.++|.++.+|..+....+|+.|.+..| .+..+|....+++.|++|
T Consensus 241 ~nl~~~dis~n~---l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNN---LSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhh---hhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeee
Confidence 345666665553 1112 24456666666666666666666666666666666666665 455556555566666666
Q ss_pred ecCCccccccCcccccc-cC-cccEEEeccccccccccc-cCcccccceeecccccCcccchhhccCCcccceeeccccc
Q 042863 460 NLEECLELEELPKDIRY-LV-SLRVFEVTTKQKSLQDSG-IGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 460 ~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 536 (680)
+|..|. +..+|..+.. +. .|+.|+.+.+.+...+.. =...+.|+.|++.+|..-....+.+..+++|+.|++++|.
T Consensus 316 dL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 666653 4444443221 11 144555555544444311 1124556777777666555555556667777777777765
Q ss_pred CcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccc
Q 042863 537 CLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALE 616 (680)
Q Consensus 537 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~ 616 (680)
+..-....+.++..|++|+|++|. ...++.....++.|+.|...+|. +...|. +..++.|+
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNk------------L~~Lp~tva~~~~L~tL~ahsN~-l~~fPe------~~~l~qL~ 455 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNK------------LTTLPDTVANLGRLHTLRAHSNQ-LLSFPE------LAQLPQLK 455 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccch------------hhhhhHHHHhhhhhHHHhhcCCc-eeechh------hhhcCcce
Confidence 432222345666777777777764 22334444556667777666653 455552 23677777
Q ss_pred eeeeccCCCCC-CCCcCC--CCCCeEEEcCCcc
Q 042863 617 GLVIGNCPKLL-SLPEDM--LHLKTLRIRGCPA 646 (680)
Q Consensus 617 ~L~l~~~~~~~-~l~~~~--~~L~~l~l~~c~~ 646 (680)
.+|++.|..-. .++... ++|+.|+++|++.
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 77777664311 233322 5777777777764
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.29 E-value=2.1e-13 Score=144.53 Aligned_cols=246 Identities=24% Similarity=0.239 Sum_probs=158.9
Q ss_pred cceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEec
Q 042863 407 QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVT 486 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 486 (680)
.+|++++++.|.++.+|+.+..|.+|+.|++.+|.+ ..+|..+....+|+.|.+..| .+..+|........|++|++.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 456666666666666665566666666666666633 555555555666666666655 344556666666666666666
Q ss_pred cccccccccccCc-cc-ccceeecccccCcccchh-hccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCcc
Q 042863 487 TKQKSLQDSGIGC-LV-SLRCLIISHCRNLEYLFD-DIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLS 563 (680)
Q Consensus 487 ~~~~~~~~~~l~~-l~-~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 563 (680)
.|++...|..+.. .. +|..|+.+.+. +...|. .-..++.|+.|.+.+|.+.....+.+.++++|+.|+|++|.--+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 6666555442211 11 24444444332 222221 11135678889999998877666668899999999999985322
Q ss_pred ccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc--CCCCCCeEEE
Q 042863 564 LNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE--DMLHLKTLRI 641 (680)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~--~~~~L~~l~l 641 (680)
++ .....+++.|+.|++++| +++.+|+.+. .|+.|+.|...+|. +..+|+ .++.|+.+++
T Consensus 398 fp-----------as~~~kle~LeeL~LSGN-kL~~Lp~tva-----~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 398 FP-----------ASKLRKLEELEELNLSGN-KLTTLPDTVA-----NLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred CC-----------HHHHhchHHhHHHhcccc-hhhhhhHHHH-----hhhhhHHHhhcCCc-eeechhhhhcCcceEEec
Confidence 22 234566789999999998 6999998766 89999999998875 666775 5789999998
Q ss_pred cCCcccccccCCCCCCCCccccccceeEecCcccccC
Q 042863 642 RGCPALSDRCKPLTGEDWHKIAHVAHIKLDDEIIKSS 678 (680)
Q Consensus 642 ~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 678 (680)
+.+ .++........ .| +.|+.+++.++-|...
T Consensus 460 S~N-~L~~~~l~~~~-p~---p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 460 SCN-NLSEVTLPEAL-PS---PNLKYLDLSGNTRLVF 491 (1081)
T ss_pred ccc-hhhhhhhhhhC-CC---cccceeeccCCccccc
Confidence 755 56665554432 34 6777777777765443
No 31
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=4.4e-10 Score=111.42 Aligned_cols=184 Identities=21% Similarity=0.217 Sum_probs=116.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH----HH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILR----VC 101 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~ 101 (680)
...++|+|++|+||||+++.++..... ..+ .+.|+ .....+..+.+..++..++..... .+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 457999999999999999999874221 111 12233 233456677888888888654332 23222333333 22
Q ss_pred -hCCceEEEEEecCCCCChhHHHHHHHhcCCC---CCCCEEEEecCchHHHHhhcc------CC-CCCceeCCCCChhhH
Q 042863 102 -LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG---AKGSKILVTTRSNKVASVMGT------RG-GTTGYNLQGLPLEDC 170 (680)
Q Consensus 102 -l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~---~~~~~iiiTsR~~~~~~~~~~------~~-~~~~~~l~~l~~~~~ 170 (680)
..+++.++|+||+|..+...++.+....... .....|++|.... +...... .. ....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2577899999999988777777665543321 2233455665443 2222111 00 023578999999999
Q ss_pred HHHHHHHhcccCCC-CCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 171 LSLFMKCAFKEERD-KHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 171 ~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
.+++.......... ...-.++.+..|++.++|+|..++.++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877543221 112334788999999999999999999776
No 32
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.27 E-value=6.7e-11 Score=115.19 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=103.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
+......+|||+|+||||||+.++. ..... |..++...+-.+-++.++..- -+....
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~-----f~~~sAv~~gvkdlr~i~e~a----------------~~~~~~ 102 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAA-----FEALSAVTSGVKDLREIIEEA----------------RKNRLL 102 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCc-----eEEeccccccHHHHHHHHHHH----------------HHHHhc
Confidence 5677899999999999999999988 33333 334444333333333333221 122335
Q ss_pred CceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE--ecCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhccc
Q 042863 104 GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV--TTRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKE 181 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii--TsR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 181 (680)
+++++|++|++|..+..+.+.+ +|.-..|..|+| ||-|+.+.-......++..+.+++|+.++..+++.+.....
T Consensus 103 gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 8899999999999877555554 555555766665 88888655444444567889999999999999999955333
Q ss_pred CCCCC---c-hHHHHHHHHHHhhCCChh
Q 042863 182 ERDKH---P-NLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 182 ~~~~~---~-~~~~~~~~i~~~~~g~Pl 205 (680)
..... . -.+++...++..++|--.
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 21111 0 123566788899988765
No 33
>PF05729 NACHT: NACHT domain
Probab=99.23 E-value=9.8e-11 Score=106.90 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=90.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc----CCcEEEEEeCCcCCHH---HHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH----FELKIWICISEDFGER---QIMTKIIKSITGQNQGDLDIEQLQRILR 99 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (680)
|+++|+|++|+||||+++.++........ +..++|+......... .+...+..... .. ...... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLP-ES--IAPIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhc-cc--hhhhHH---HHH
Confidence 57999999999999999999984332222 2456666655533332 22222222221 11 111111 122
Q ss_pred H-HhCCceEEEEEecCCCCChh-------HH-HHHHHhcCC-CCCCCEEEEecCchHHHHhhccCCCCCceeCCCCChhh
Q 042863 100 V-CLNGKRYLLVMDDVWNEDPK-------VW-DKLKSLLSG-GAKGSKILVTTRSNKVASVMGTRGGTTGYNLQGLPLED 169 (680)
Q Consensus 100 ~-~l~~~~~llvlD~~~~~~~~-------~~-~~l~~~l~~-~~~~~~iiiTsR~~~~~~~~~~~~~~~~~~l~~l~~~~ 169 (680)
. ..+..+++||+|+++..... .+ +.+..++.. ..++++++||+|................+.+++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 22578899999999553221 11 234445554 35688999999998775544444444679999999999
Q ss_pred HHHHHHHHh
Q 042863 170 CLSLFMKCA 178 (680)
Q Consensus 170 ~~~l~~~~~ 178 (680)
..++++++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998876
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.22 E-value=1.8e-09 Score=115.83 Aligned_cols=306 Identities=11% Similarity=0.035 Sum_probs=162.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh---hcC--CcEEEEEeCCcCCHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE---EHF--ELKIWICISEDFGERQIMT 75 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~ 75 (680)
+.||++|+++|...|.....+ .+...+++|+|++|.|||++++.+++..... ... -.++++++....+...++.
T Consensus 757 LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 479999999999999874422 2334577899999999999999998742211 111 2367889888788888888
Q ss_pred HHHHHhcCCCC-CCcCHHHHHHHHHHHh-C--CceEEEEEecCCCCChhHHHHHHHhcCC-CCCCCEEE--EecCchHH-
Q 042863 76 KIIKSITGQNQ-GDLDIEQLQRILRVCL-N--GKRYLLVMDDVWNEDPKVWDKLKSLLSG-GAKGSKIL--VTTRSNKV- 147 (680)
Q Consensus 76 ~~~~~l~~~~~-~~~~~~~~~~~~~~~l-~--~~~~llvlD~~~~~~~~~~~~l~~~l~~-~~~~~~ii--iTsR~~~~- 147 (680)
.+..++....+ ...........+...+ + ....+||||+++......-+.+..++.+ ...+++++ .++..-.+
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLP 915 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcc
Confidence 88888854332 2233334444444333 2 2245999999965332222223333322 12234433 34432211
Q ss_pred ---HHhhccCCCCCceeCCCCChhhHHHHHHHHhcccC-CCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChh-h
Q 042863 148 ---ASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEE-RDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEH-D 222 (680)
Q Consensus 148 ---~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~-~ 222 (680)
...+...-....+..+|++.++..+++..++.... ......++-.|+.+++..|..-.||.++-.+........ .
T Consensus 916 erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT 995 (1164)
T PTZ00112 916 ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIV 995 (1164)
T ss_pred hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccC
Confidence 11111212223467799999999999999986432 222223333444444445556667666655443211100 0
Q ss_pred HHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCCC---CeeechHHHHHHH--HHcCCCCCCCCCCchh
Q 042863 223 WEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFPK---DYQFSSVYLVQFW--MAQGLLHPLNENDELD 297 (680)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~---~~~~~~~~l~~~w--~~~g~~~~~~~~~~~~ 297 (680)
-+++... .. .--...+.-....||.+.+-++..+....+ ...++...+.... +++..-.....+....
T Consensus 996 ~eHVrkA-le------eiE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTq 1068 (1164)
T PTZ00112 996 PRDITEA-TN------QLFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNE 1068 (1164)
T ss_pred HHHHHHH-HH------HHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHH
Confidence 0000000 00 001122344456788887776665554322 2234544443221 1210000111122223
Q ss_pred HHHHHHHHHHHhCCcccc
Q 042863 298 DIGMRSLKQLCSRSFFHD 315 (680)
Q Consensus 298 ~~~~~~l~~L~~~sll~~ 315 (680)
...+++.+|...|++-.
T Consensus 1069 -RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1069 -LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred -HHHHHHHHHHhcCeEEe
Confidence 67778888888887663
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.16 E-value=1.4e-10 Score=105.62 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=105.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|||.++.+..+.-.+.... ..+.....+.+|||+|.||||||+-+++ .....| .+.+... ..-...+..++..
T Consensus 26 fiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~---~~~sg~~-i~k~~dl~~il~~ 98 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF---KITSGPA-IEKAGDLAAILTN 98 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E---EEEECCC---SCHHHHHHHHT
T ss_pred ccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe---Eeccchh-hhhHHHHHHHHHh
Confidence 7899999988776665422 2235577899999999999999999998 544443 2333321 1111112222222
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC--------CCCCE-----------EEEe
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG--------AKGSK-----------ILVT 141 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~--------~~~~~-----------iiiT 141 (680)
+ +++.++++|++|..+....+.+...+.++ +++++ |=-|
T Consensus 99 l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 99 L----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp ------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred c----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 1 34568889999998887777777766554 11121 2247
Q ss_pred cCchHHHHhhccCCCCCc-eeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhc
Q 042863 142 TRSNKVASVMGTRGGTTG-YNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLY 215 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 215 (680)
||...+...... +... ..+...+.+|-.+++.+.+..-.... .++.+..|+.++.|-|....-+-+.++
T Consensus 157 Tr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 157 TRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp SSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 887655444433 2233 36999999999999998775554433 347889999999999997766665554
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=3.1e-12 Score=123.14 Aligned_cols=273 Identities=17% Similarity=0.162 Sum_probs=144.2
Q ss_pred CCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCC-CCcccccc-cccC
Q 042863 351 QSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSG-SAIEALPK-EIGN 428 (680)
Q Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~ 428 (680)
...|..+..+.++.+.+... -++.|+.+++|+.|+|+.|. ...+-+++|.+++.|..|-+.+ |+|+.+|+ .|.+
T Consensus 63 ~~LP~~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred ccCCCcceEEEeccCCcccC-Chhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 34555666667766554332 24567777777777777765 3444556677777766665544 67776665 4566
Q ss_pred cCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcc-cccccCcccEEEecccccccc-------------c
Q 042863 429 LKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPK-DIRYLVSLRVFEVTTKQKSLQ-------------D 494 (680)
Q Consensus 429 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-------------~ 494 (680)
+..|+.|.+.-|.........+..+++|..|.+.+|. ...++. .+..+.+++.+++..|.+... +
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 7777777776665555555666677777777777653 334444 456666666666655542211 0
Q ss_pred cccCcccccceeecccccCcccchh-hcc-CCcccceeecccc-cCcccCCccCCCCCCcCeEeecCCCCcccccccccc
Q 042863 495 SGIGCLVSLRCLIISHCRNLEYLFD-DID-QLRVLRSLLIAGC-PCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLE 571 (680)
Q Consensus 495 ~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 571 (680)
-+++...-.....+.+. .+..+.. .+. .+..+.+--.+.| .........|+.+++|++|++++|..-
T Consensus 218 ietsgarc~~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~--------- 287 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYK-RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT--------- 287 (498)
T ss_pred hhcccceecchHHHHHH-HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc---------
Confidence 00111111111111110 0000100 000 0011110001111 111122234777888888888887421
Q ss_pred CCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcC---CCCCCeEEEcCCc
Q 042863 572 GEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPED---MLHLKTLRIRGCP 645 (680)
Q Consensus 572 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~---~~~L~~l~l~~c~ 645 (680)
...+..+....+|++|.+..|. +..+.. ..++++..|+.|+|.+|....-.|.. ...|.+|++-++|
T Consensus 288 --~i~~~aFe~~a~l~eL~L~~N~-l~~v~~----~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 288 --RIEDGAFEGAAELQELYLTRNK-LEFVSS----GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred --hhhhhhhcchhhhhhhhcCcch-HHHHHH----HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 2223345556678888887763 444433 34568888888888888654433433 3466667765444
No 37
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.6e-09 Score=99.19 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=143.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+|.++..+.+.-.+.... ..+....++.++||+|.||||||.-+++ .+..++. +.......-..-+..++..
T Consensus 28 fiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~leK~gDlaaiLt~ 100 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPALEKPGDLAAILTN 100 (332)
T ss_pred hcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ecccccccChhhHHHHHhc
Confidence 7899999988888777644 4456678999999999999999999998 5544432 1111111111222222222
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC--------CCCCEEE-----------Ee
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG--------AKGSKIL-----------VT 141 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~--------~~~~~ii-----------iT 141 (680)
+ ...-++++|++|...+..-+.+...+.++ +++++.+ -|
T Consensus 101 L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 101 L----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred C----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 2 34457788888877666555555555544 2333322 48
Q ss_pred cCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChh
Q 042863 142 TRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEH 221 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~ 221 (680)
||...+...++.+.+ -...++-.+.+|-.++..+.+..-+....+ +.+.+|++++.|-|....-+-+..+
T Consensus 159 Tr~G~lt~PLrdRFG-i~~rlefY~~~eL~~Iv~r~a~~l~i~i~~---~~a~eIA~rSRGTPRIAnRLLrRVR------ 228 (332)
T COG2255 159 TRAGMLTNPLRDRFG-IIQRLEFYTVEELEEIVKRSAKILGIEIDE---EAALEIARRSRGTPRIANRLLRRVR------ 228 (332)
T ss_pred cccccccchhHHhcC-CeeeeecCCHHHHHHHHHHHHHHhCCCCCh---HHHHHHHHhccCCcHHHHHHHHHHH------
Confidence 887765555544322 235688889999999999988655554443 7789999999999997666655553
Q ss_pred hHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCCCCeeechHH
Q 042863 222 DWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVY 276 (680)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~ 276 (680)
++..+....... ....+.....+.+-=..|+.-+++++..+.-.+.+-++....
T Consensus 229 Dfa~V~~~~~I~-~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~t 282 (332)
T COG2255 229 DFAQVKGDGDID-RDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDT 282 (332)
T ss_pred HHHHHhcCCccc-HHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHH
Confidence 111111110000 011123444555556677777888887766555444444333
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-11 Score=117.88 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=80.5
Q ss_pred ccCcccEEEeccccccccc-----cccCcccccceeecccccCcc----cchhhccCCcccceeecccccCcc----cCC
Q 042863 476 YLVSLRVFEVTTKQKSLQD-----SGIGCLVSLRCLIISHCRNLE----YLFDDIDQLRVLRSLLIAGCPCLI----SLP 542 (680)
Q Consensus 476 ~l~~L~~L~l~~~~~~~~~-----~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~~ 542 (680)
..++|+.+.+.+|.+...+ ..+...+.|+.+.+..|..-. -+...+..+++|+.|++..|.+.. .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 4456777777777655432 234555677777777654322 234456677777777777776643 233
Q ss_pred ccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeecc
Q 042863 543 PAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGN 622 (680)
Q Consensus 543 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~ 622 (680)
..+..+++|++|++++|---+ .+............|+|+.|.+.+|.. +.-.......+....|.|++|+|++
T Consensus 235 kaL~s~~~L~El~l~dcll~~------~Ga~a~~~al~~~~p~L~vl~l~gNeI-t~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLEN------EGAIAFVDALKESAPSLEVLELAGNEI-TRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHhcccchheeeccccccccc------ccHHHHHHHHhccCCCCceeccCcchh-HHHHHHHHHHHHhcchhhHHhcCCc
Confidence 444556677777777773211 111222233344467777777777743 2222222223445567777777777
Q ss_pred CCC
Q 042863 623 CPK 625 (680)
Q Consensus 623 ~~~ 625 (680)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 753
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=6.6e-12 Score=120.90 Aligned_cols=225 Identities=16% Similarity=0.124 Sum_probs=137.7
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEec-CCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSI-NDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHM 432 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L 432 (680)
.++|.++++.++++... +..|++++.|.+|-+.+ |. ........|.++..|+.|.++-|.+.-+ ...+..+++|
T Consensus 91 ~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~Nk---I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 91 HRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNK---ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred hhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCc---hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 46888899888766544 56789998888777765 43 5566778899999999999999998844 4568889999
Q ss_pred ceeccccccCCCccCh-hhcCCCCCcEEecCCccccc------------cCcccccccCcccEEEecc------------
Q 042863 433 RYLDLSRNYKIKKLPN-AICELQSLQTLNLEECLELE------------ELPKDIRYLVSLRVFEVTT------------ 487 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L~l~~------------ 487 (680)
..|.+.+|. ...++. .+..+..++.+.+..|.... ..|..++...-.+-..+.+
T Consensus 167 ~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~ 245 (498)
T KOG4237|consen 167 SLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL 245 (498)
T ss_pred chhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh
Confidence 999999984 445554 67788889999887765221 1222222211111111111
Q ss_pred -------------cccccc-c-cccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcC
Q 042863 488 -------------KQKSLQ-D-SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLE 552 (680)
Q Consensus 488 -------------~~~~~~-~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 552 (680)
+..... | .-+..+++|+.|++++|....--..++..+..++.|.|..|.+..--...+.++..|+
T Consensus 246 c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~ 325 (498)
T KOG4237|consen 246 CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK 325 (498)
T ss_pred hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence 111111 1 1245666777777766553322234555666677777766654332234456667777
Q ss_pred eEeecCCCCccccccccccCCCCcCcccCCCCcccceeccccc
Q 042863 553 TLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVT 595 (680)
Q Consensus 553 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 595 (680)
.|+|++|..-. ..+..+....+|.+|++-.|+
T Consensus 326 tL~L~~N~it~-----------~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 326 TLSLYDNQITT-----------VAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred eeeecCCeeEE-----------EecccccccceeeeeehccCc
Confidence 77777764222 123334445566666665544
No 40
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.7e-08 Score=99.81 Aligned_cols=295 Identities=18% Similarity=0.136 Sum_probs=170.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC--CcEEEEEeCCcCCHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF--ELKIWICISEDFGERQIMTKII 78 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (680)
+.+|++|++++...|.... .++.+..+.|+|++|.|||+.++.++. +..... ..++++++....++.+++..++
T Consensus 19 l~~Re~ei~~l~~~l~~~~--~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPAL--RGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHh--cCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 4689999999999998754 334455699999999999999999998 443332 2279999999999999999999
Q ss_pred HHhcCCCCCCcCHHHHHHHHHHHhC--CceEEEEEecCCCCChhHHHHHHHhcCCCCC-CCE--EEEecCchHHHHhhc-
Q 042863 79 KSITGQNQGDLDIEQLQRILRVCLN--GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAK-GSK--ILVTTRSNKVASVMG- 152 (680)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~-~~~--iiiTsR~~~~~~~~~- 152 (680)
++++..........+..+.+.+.+. ++.++||+|+++......-+.+..++..... .++ +|..+.+-.+.....
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 9998555555677777777777774 5788999999955222111233333332221 333 344444433222221
Q ss_pred ---cCCCCCceeCCCCChhhHHHHHHHHhccc--CCCCCchHHHHHHHHHHhhCC-ChhHHHHHHhhhc--cCC--Chhh
Q 042863 153 ---TRGGTTGYNLQGLPLEDCLSLFMKCAFKE--ERDKHPNLVKIGEEIVKKCGG-IPLAVRTLGSLLY--CST--DEHD 222 (680)
Q Consensus 153 ---~~~~~~~~~l~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~~l~--~~~--~~~~ 222 (680)
..-+...+..+|-+.+|-.+++..++... ....++...+.+..++...+| --.|+..+..+.. +.. ..-.
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~ 254 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVS 254 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcC
Confidence 11233458899999999999999888532 222333444444555555554 4445544433321 111 0000
Q ss_pred HHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCCCCeeechHHHHH--HHHHcCCCCCCCCCCchhHHH
Q 042863 223 WEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQ--FWMAQGLLHPLNENDELDDIG 300 (680)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~l~~--~w~~~g~~~~~~~~~~~~~~~ 300 (680)
-+..... ..+--.....-.+..|+.+++-.+..++.... .+....+.+ .++...+ .. .....
T Consensus 255 ~~~v~~a-------~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~--~~~~~~~y~~y~~~~~~~------~~-~~~~~ 318 (366)
T COG1474 255 EDHVREA-------QEEIERDVLEEVLKTLPLHQKIVLLAIVELTV--EISTGELYDVYESLCERL------RT-SQRRF 318 (366)
T ss_pred HHHHHHH-------HHHhhHHHHHHHHHcCCHhHHHHHHHHHHhcC--CCChHHHHHHHHHHHhhh------Cc-hHHHH
Confidence 0111000 00011223344477888888777666655432 222222211 1111111 00 34456
Q ss_pred HHHHHHHHhCCcccc
Q 042863 301 MRSLKQLCSRSFFHD 315 (680)
Q Consensus 301 ~~~l~~L~~~sll~~ 315 (680)
.+++..|...+++..
T Consensus 319 ~~ii~~L~~lgiv~~ 333 (366)
T COG1474 319 SDIISELEGLGIVSA 333 (366)
T ss_pred HHHHHHHHhcCeEEe
Confidence 667777777777664
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.05 E-value=4.5e-09 Score=110.01 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=109.0
Q ss_pred CCCchhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREK---IIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~---l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
|||++..+.. +.+++.. +....+.++|++|+||||+|+.+++ ..... |+.++........++.+
T Consensus 14 ~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~-----~~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAG--ATDAP-----FEALSAVTSGVKDLREV 80 (413)
T ss_pred hcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHH--HhCCC-----EEEEecccccHHHHHHH
Confidence 5888888766 7777754 3455788999999999999999987 33222 22222211111112222
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHH-HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE--ecCchHHHHhhccC
Q 042863 78 IKSITGQNQGDLDIEQLQRILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV--TTRSNKVASVMGTR 154 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii--TsR~~~~~~~~~~~ 154 (680)
+.. ... ...+++.+|++|+++.......+.+...+.. +..++| ||.++.........
T Consensus 81 i~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 81 IEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHh
Confidence 211 111 1135778999999988776666666665543 333433 45554322211222
Q ss_pred CCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 155 GGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 155 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
.+...+.++++++++...++.+..........+-.++....|++.++|.+..+..+..
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3446789999999999999998764321110022246678899999999986654443
No 42
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.04 E-value=8.2e-09 Score=106.14 Aligned_cols=199 Identities=13% Similarity=0.150 Sum_probs=116.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHH-HHHH---
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGER-QIMT--- 75 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--- 75 (680)
|+|++..++.+.+++.. +..+.+.++|++|+|||++|+.+++... ...+ ...+++++....... ....
T Consensus 17 ~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 17 ILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred hcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCc
Confidence 58999999999998854 2344688999999999999999987321 1111 224455543311000 0000
Q ss_pred HHHHHhcCCCC-CCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HH
Q 042863 76 KIIKSITGQNQ-GDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VA 148 (680)
Q Consensus 76 ~~~~~l~~~~~-~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~ 148 (680)
......+.... .....+.+...+.+.. ...+-+||+||++.........+..++......+++|+|+.++. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 00000000000 0001222222222221 13345899999977665555566666665555667877775432 22
Q ss_pred HhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 149 SVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
.... .+...+.+.++++++..+++.+.+...+...+ ++.+..+++.++|.+..+....
T Consensus 170 ~~L~--sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 170 PPIR--SRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hhhc--CCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2111 23456889999999999999988765544433 3677899999999887654443
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.03 E-value=2.7e-11 Score=117.72 Aligned_cols=284 Identities=21% Similarity=0.289 Sum_probs=192.0
Q ss_pred ceeEEEEeccCcchh-hhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCC-Ccccc-cc-cccCcCC
Q 042863 356 RVRHLSFVGANASRK-DFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGS-AIEAL-PK-EIGNLKH 431 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~-~~-~~~~l~~ 431 (680)
.++.+++.|..-... .+..+...|++...|++.++. ...+......-..|++|++|+|..| .++.. .+ ...+|++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356677777663333 344556678998888887764 4566666677788999999999995 45522 22 4457999
Q ss_pred cceeccccccCCCc--cChhhcCCCCCcEEecCCcccccc--CcccccccCcccEEEeccccccccc---cccCcccccc
Q 042863 432 MRYLDLSRNYKIKK--LPNAICELQSLQTLNLEECLELEE--LPKDIRYLVSLRVFEVTTKQKSLQD---SGIGCLVSLR 504 (680)
Q Consensus 432 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~---~~l~~l~~L~ 504 (680)
|++|+++||..... +-....++..++.+.+.+|...+. +-..-..+..+..+++..|...... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999999975533 223345677788887777743321 1111133444555665566433321 1224578899
Q ss_pred eeecccccCcccch--hhccCCcccceeecccccCccc--CCccCCCCCCcCeEeecCCCCccccccccccCCCCcCccc
Q 042863 505 CLIISHCRNLEYLF--DDIDQLRVLRSLLIAGCPCLIS--LPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASN 580 (680)
Q Consensus 505 ~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (680)
.|+.++|..++..+ .-..++.+|+.+.++.|...+. +...-.+++.|+.+++.+|.... +..+....
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~---------d~tL~sls 368 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT---------DGTLASLS 368 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh---------hhhHhhhc
Confidence 99999998876532 2234679999999999986543 33345688999999999987544 33566777
Q ss_pred CCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCC----cCCCCCCeEEEcCCccccc
Q 042863 581 TTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP----EDMLHLKTLRIRGCPALSD 649 (680)
Q Consensus 581 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~----~~~~~L~~l~l~~c~~l~~ 649 (680)
.++|.|+.|.+++|..++.-..-...........|+.+++++||.+++-. ..+++|+.+++.+|..++.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 88999999999999866555322222233456789999999999876432 3678999999999976544
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.03 E-value=4.5e-09 Score=101.20 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=106.6
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG 83 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (680)
.+..++.+.+++.. ...+.+.|+|++|+|||++|+.+++ .........+|+++....... ..++
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~~~~~~~---~~~~----- 85 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPLAELAQAD---PEVL----- 85 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeHHHHHHhH---HHHH-----
Confidence 34566777766532 3456899999999999999999987 333333456677765422110 0111
Q ss_pred CCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhH--HHHHHHhcCC-CCCCCEEEEecCchHHH------HhhccC
Q 042863 84 QNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKV--WDKLKSLLSG-GAKGSKILVTTRSNKVA------SVMGTR 154 (680)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~--~~~l~~~l~~-~~~~~~iiiTsR~~~~~------~~~~~~ 154 (680)
..+.+ .-+||+||++...... ...+...+.. ...+..+|+|++..... ......
T Consensus 86 ----------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 86 ----------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ----------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 11122 2489999997644322 3445444433 12234688888754211 111111
Q ss_pred CCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 155 GGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 155 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
.....+.++++++++...+++..........+ ++.+..|++.++|+|..+..+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11256899999999999999886643333333 3667889999999999887776544
No 45
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.7e-08 Score=103.58 Aligned_cols=192 Identities=16% Similarity=0.183 Sum_probs=113.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+..++.+...+.. +.-+..+.++|++|+||||+|+.+++...-...+.. ..........++...
T Consensus 18 iiGq~~~~~~l~~~~~~-----~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 18 IIGQKHIVTAISNGLSL-----GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEKG 85 (363)
T ss_pred ccChHHHHHHHHHHHHc-----CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhcC
Confidence 47999999999988865 233456789999999999999999874211111100 000000111111111
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~ 150 (680)
...+ .......+++.+.+... ..+++-++|+|+++......++.+...+...+..+++|++|.+.. +...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 1000 00011222222222111 123456999999988776667777777776666677777665543 2222
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRT 209 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 209 (680)
. ..+...+++++++.++..+++...+...+...+ ++.+..|++.++|.|..+..
T Consensus 166 I--~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 166 I--LSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred H--HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2 233467999999999999999987755543333 35678899999998874433
No 46
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.01 E-value=1.1e-09 Score=101.95 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=38.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
||||+++++++...+.. ...+..+.++|+|++|+|||+|+++++. +.......++.+.+..
T Consensus 2 fvgR~~e~~~l~~~l~~---~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA---AQSGSPRNLLLTGESGSGKTSLLRALLD--RLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTGG---TSS-----EEE-B-TTSSHHHHHHHHHH--HHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHHH---HHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEEEec
Confidence 89999999999999973 2456679999999999999999999988 4444432344444444
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=7.5e-11 Score=112.27 Aligned_cols=256 Identities=19% Similarity=0.163 Sum_probs=152.5
Q ss_pred hHHHhhhcCCccEEEEecCCccc-chHHHHHhhccCcceeEEEeCCCCc---c-ccc-------ccccCcCCcceecccc
Q 042863 372 FSRFLSDLGRVRTIFFSINDEKV-SQSFVRSCISKSQFLRVLNLSGSAI---E-ALP-------KEIGNLKHMRYLDLSR 439 (680)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~---~-~~~-------~~~~~l~~L~~L~l~~ 439 (680)
+......+..+..+++++|.+.. ....+..++.+.+.|+..++++--. . .+| +.+.++|+|++|+||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34455566777777777765432 2344555666677777777666311 1 222 2234555666666666
Q ss_pred ccCCCccChh----hcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCc-
Q 042863 440 NYKIKKLPNA----ICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNL- 514 (680)
Q Consensus 440 ~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~- 514 (680)
|.+....++. +.++..|++|+|.+|.....-...++. .|..|. . .....+-+.|+.+....|..-
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~------~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V------NKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H------HhccCCCcceEEEEeecccccc
Confidence 6544333322 334555666666555322111111110 122221 0 112344578999988876522
Q ss_pred ---ccchhhccCCcccceeecccccCccc----CCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCccc
Q 042863 515 ---EYLFDDIDQLRVLRSLLIAGCPCLIS----LPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLR 587 (680)
Q Consensus 515 ---~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 587 (680)
+.+...+..++.|+.+.+..|.+-.. +...+.+|++|+.|++.+|..-. .....+.......|+|+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-------egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-------EGSVALAKALSSWPHLR 244 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-------HHHHHHHHHhcccchhe
Confidence 22455677789999999999876432 34557899999999999985322 12233445567778999
Q ss_pred ceecccccCCcccc-hhhhhhhcccCCccceeeeccCCCCCC--------CCcCCCCCCeEEEcCCcc
Q 042863 588 KLLIGQVTPLLELP-QWLLQESLRNFQALEGLVIGNCPKLLS--------LPEDMLHLKTLRIRGCPA 646 (680)
Q Consensus 588 ~L~l~~~~~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~--------l~~~~~~L~~l~l~~c~~ 646 (680)
.|++++|. +.+-. ..+....-...|+|+.|.+.+|..... +. ..+.|.+|++++|..
T Consensus 245 El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 245 ELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRL 310 (382)
T ss_pred eecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCcccc
Confidence 99999995 44443 333322334589999999999976431 22 378999999999965
No 48
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.6e-08 Score=110.38 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=117.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-------------------CCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-------------------FELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------~~~~~~ 61 (680)
+||.+..++.+.+++.. +.-...+.++|+.|+||||+|+.+++...-... |..+++
T Consensus 18 IIGQe~Iv~~LknaI~~-----~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 18 MVGQSHVLHALTNALTQ-----QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred hcCcHHHHHHHHHHHHh-----CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 58999999999988865 122445589999999999999999974211111 111122
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH-HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV 140 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii 140 (680)
++......+ ..++++... +.. ...+++-++|||+++.......+.+...+-..+..+++|+
T Consensus 93 idAas~~kV-DdIReLie~-----------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 93 VDAASRTKV-DDTRELLDN-----------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred eccccccCH-HHHHHHHHH-----------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 211110111 111222211 111 1245667999999999888888888888877666777776
Q ss_pred ecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 141 TTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 141 TsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+|.+.. +...+. .++..+.+++++.++..+++...+....... .++.+..|++.++|.|..+..++
T Consensus 155 aTTe~~kLl~TIl--SRCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 155 ATTDPQKLPVTVL--SRCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred ECCCchhchHHHH--HhheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 665543 332222 2457899999999999999998875543333 23677899999999997444443
No 49
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=2.2e-08 Score=105.99 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=118.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|++...+.+..++.. +.-...+.++|++|+||||+|+.+++...-.... .. .........+.+...
T Consensus 17 VIGQe~vv~~L~~aI~~-----grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~------~~-~pCg~C~sC~~I~~g 84 (702)
T PRK14960 17 LVGQNHVSRALSSALER-----GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGV------TS-TPCEVCATCKAVNEG 84 (702)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCC------CC-CCCccCHHHHHHhcC
Confidence 58999999999999965 2335677999999999999999998742111100 00 001111111111111
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVM 151 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~ 151 (680)
-+.+ ......++++.+.+... ..++.-++|+|+++..+....+.+...+...+.++++|++|.+..-.. .
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp-~ 163 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP-I 163 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh-H
Confidence 1100 00111233332222221 234566899999998887787888877777666777887776543221 1
Q ss_pred ccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 152 GTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 152 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
....+...+++.+++.++..+.+.+.+...+.... ++.+..|++.++|.+..+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 11234578999999999999999988866554443 3667899999999886443
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.97 E-value=6.2e-08 Score=103.60 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=114.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+++..+.+..++.... .+...+.+.|+|++|+||||+|+.+++.. . ++ ++.++.+..... ..+..++..
T Consensus 16 lvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred hcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHHHH
Confidence 4799999999999997643 12236899999999999999999998842 1 22 344444433222 223333322
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh----hHHHHHHHhcCCCCCCCEEEEecCchHHHHhhccCCC
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP----KVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTRGG 156 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~----~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~~~ 156 (680)
...... ....++-+||+|+++.... .....+...+... +..+|+++.+............
T Consensus 88 ~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 88 AATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred hhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHhcc
Confidence 211100 0112567999999966432 3455565555533 3346666644321111011123
Q ss_pred CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 157 TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 157 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
...+.+++++.++....+...+...+...++ ++...|++.++|....+....
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~---eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECDD---EALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 4678999999999999999888665544433 677899999999887554433
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2e-11 Score=123.10 Aligned_cols=132 Identities=28% Similarity=0.413 Sum_probs=66.1
Q ss_pred HhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 401 SCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 401 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
.+++.+..|++|+|+.|.++.+|..+..|+ |+.|.+++| .++.+|..++..+.|..|+.+.|. +..+|..++.+.+|
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~sl 191 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSL 191 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHH
Confidence 344555555555555555555555544444 455555544 344444445545555555555442 33445555555555
Q ss_pred cEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccC
Q 042863 481 RVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 481 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 537 (680)
+.|++..|++..+|..+..+ .|..|+++.| .+..+|-.+..|+.|++|-|.+|++
T Consensus 192 r~l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 192 RDLNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCC
Confidence 55555555555555444422 3455555432 2444555555555555555555544
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=5.9e-08 Score=103.95 Aligned_cols=193 Identities=13% Similarity=0.180 Sum_probs=119.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|++..++.|..++.. +.-...+.++|+.|+||||+|+.+++...-..... ...+......+.+...
T Consensus 18 VIGQe~Vv~~L~~aL~~-----gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 18 LVGQEHVVRALTHALDG-----GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEG 85 (830)
T ss_pred HcCcHHHHHHHHHHHhc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcC
Confidence 48999999999999865 22345668999999999999999987421111100 0001111111111110
Q ss_pred hcC-----CCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhh
Q 042863 81 ITG-----QNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVM 151 (680)
Q Consensus 81 l~~-----~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~ 151 (680)
-+. +.......+++.+.+... ..++.-++|||+++..+...++.+...+......+++|++|.+..-.. .
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp-~ 164 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP-V 164 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc-c
Confidence 000 000111223333322221 123455899999998888778888777777666778888887764221 1
Q ss_pred ccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHH
Q 042863 152 GTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRT 209 (680)
Q Consensus 152 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~ 209 (680)
....++..+.+++++.++..+.+.+....++...+ ++....|++.++|... ++..
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 12245678999999999999999998866544333 3667899999998765 5544
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.97 E-value=9e-09 Score=98.49 Aligned_cols=160 Identities=16% Similarity=0.219 Sum_probs=108.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
+..+.+.+||++|+||||||+.++...... .+.|+..+......+..+.++++-. -...+-
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 456789999999999999999998743222 2567877765555555555544431 011235
Q ss_pred CceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE--ecCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhc--
Q 042863 104 GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV--TTRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAF-- 179 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii--TsR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~-- 179 (680)
++++++++|+++..+.. +-..++|+-..|..++| ||.++.+........++.++.+++|..++...++.+...
T Consensus 221 krkTilFiDEiHRFNks---QQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKS---QQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhh---hhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 78999999999887653 34456777666876666 888886555444446678899999999999999988443
Q ss_pred -ccCC----CCCc---hHHHHHHHHHHhhCCChh
Q 042863 180 -KEER----DKHP---NLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 180 -~~~~----~~~~---~~~~~~~~i~~~~~g~Pl 205 (680)
+.+. ...+ ..+.+.+.++..|+|-..
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 2211 1111 344566778888888664
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.96 E-value=2.3e-09 Score=93.35 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=84.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhh---cCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEE---HFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC 101 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (680)
+.+.++|+|++|+|||+++.++++...... .-..++|+++....+...+...++.+++.......+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346899999999999999999998432111 13457899998888899999999999987776667777777888887
Q ss_pred hCCc-eEEEEEecCCCC-ChhHHHHHHHhcCCCCCCCEEEEecCc
Q 042863 102 LNGK-RYLLVMDDVWNE-DPKVWDKLKSLLSGGAKGSKILVTTRS 144 (680)
Q Consensus 102 l~~~-~~llvlD~~~~~-~~~~~~~l~~~l~~~~~~~~iiiTsR~ 144 (680)
++.. ..+||+|+++.. ....++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7554 459999999776 5555666666555 446667776654
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=7.5e-10 Score=124.16 Aligned_cols=238 Identities=24% Similarity=0.259 Sum_probs=122.3
Q ss_pred CcceeEEEeCCCC--ccccccc-ccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 406 SQFLRVLNLSGSA--IEALPKE-IGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 406 ~~~L~~L~L~~~~--~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
++.|+.|-+.+|. +..++.. |..+|.|..||+++|.....+|..++.+-+|++|+++++ .+..+|.+++++.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhe
Confidence 4456666555554 3333332 445666666666666555666666666666666666654 34456666666666666
Q ss_pred EEecccccccc-ccccCcccccceeeccccc-Cc-ccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCC
Q 042863 483 FEVTTKQKSLQ-DSGIGCLVSLRCLIISHCR-NL-EYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 483 L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~-~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
|++..+..... +.....+++|+.|.+..-. .. ......+..+++|+.+....... .+...+..++.|.++...-+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 66655543322 2233335666666554422 01 11122233344444443322111 11111122222222111110
Q ss_pred CCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhccc-CCccceeeeccCCCCCCCCc--CCCCC
Q 042863 560 ESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRN-FQALEGLVIGNCPKLLSLPE--DMLHL 636 (680)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~l~~--~~~~L 636 (680)
. ..............+.+|+.|.+.+|........+........ ++++..+.+.+|..+..+.. ..++|
T Consensus 701 ~--------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L 772 (889)
T KOG4658|consen 701 I--------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHL 772 (889)
T ss_pred h--------cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcc
Confidence 0 0012334455567778999999999976433333322111122 66778888888877776653 56789
Q ss_pred CeEEEcCCcccccccCCC
Q 042863 637 KTLRIRGCPALSDRCKPL 654 (680)
Q Consensus 637 ~~l~l~~c~~l~~~~~~~ 654 (680)
+.|.+..|+.+.+.+...
T Consensus 773 ~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 773 TSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred cEEEEecccccccCCCHH
Confidence 999999998777665443
No 56
>PRK06893 DNA replication initiation factor; Validated
Probab=98.93 E-value=2.4e-08 Score=95.48 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=96.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
..+.++++|++|+|||.|++.+++ ........+.|++...... ....+ .+.+ .
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~~---~~~~~---------------------~~~~-~ 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQY---FSPAV---------------------LENL-E 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhhh---hhHHH---------------------Hhhc-c
Confidence 346789999999999999999998 4444445567887642100 00011 1111 1
Q ss_pred ceEEEEEecCCCCC-hhHHH-HHHHhcCCC-CCCCEE-EEecCch---------HHHHhhccCCCCCceeCCCCChhhHH
Q 042863 105 KRYLLVMDDVWNED-PKVWD-KLKSLLSGG-AKGSKI-LVTTRSN---------KVASVMGTRGGTTGYNLQGLPLEDCL 171 (680)
Q Consensus 105 ~~~llvlD~~~~~~-~~~~~-~l~~~l~~~-~~~~~i-iiTsR~~---------~~~~~~~~~~~~~~~~l~~l~~~~~~ 171 (680)
+.-+|++||+|... ...|. .+...+... ..+..+ |+|++.. .+...+ .....+.++++++++.+
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl---~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL---TWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH---hcCCeeeCCCCCHHHHH
Confidence 23589999997632 12222 344444432 224445 4555542 222221 12256889999999999
Q ss_pred HHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 172 SLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
+++++.+.......+ +++...|++++.|....+..+-..+
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999998865544333 3677899999999888776665544
No 57
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=6.2e-08 Score=102.70 Aligned_cols=183 Identities=17% Similarity=0.186 Sum_probs=116.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh-------------------hcCCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE-------------------EHFELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~~~~~~~ 61 (680)
++|.+..++.+...+.. +.....+.++|++|+||||+|+.+++...-. ..|..+++
T Consensus 18 iiGq~~~v~~L~~~i~~-----~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 18 VAGQQHALNSLVHALET-----QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 47999999999988865 2334567889999999999999998732110 01223333
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH-HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV 140 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii 140 (680)
++.......+. .+. +...+.. ...+++-++|+|+++..+....+.+...+...+..+.+|+
T Consensus 93 idaas~~gvd~-ir~-----------------ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 93 IDAASRTGVEE-TKE-----------------ILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred eecccccCHHH-HHH-----------------HHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 33222111111 111 2222211 1235567999999988888788888888887666666665
Q ss_pred ecCch-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHHH
Q 042863 141 TTRSN-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTLG 211 (680)
Q Consensus 141 TsR~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~ 211 (680)
+|.+. .+.... ..+...+++.+++.++....+.+.+...+.... ++.+..|++.++|.+. ++..+-
T Consensus 155 ~Ttd~~kil~tI--~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 155 ATTDYHKIPVTI--LSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EECChhhhhhhH--HHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 55443 232221 234578999999999999999887765544333 3566889999999775 444443
No 58
>PLN03025 replication factor C subunit; Provisional
Probab=98.92 E-value=5.8e-08 Score=98.15 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=112.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCC-cEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFE-LKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++|.++.++.+.+++.. +..+.+.++|++|+||||+|+.+++.. ....|. .++-++.+...... ..+..+.
T Consensus 15 ~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 15 IVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred hcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHH
Confidence 47888888888887754 334568899999999999999998732 122222 12222222221211 2222222
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCCCCC
Q 042863 80 SITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRGGTT 158 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~~~~ 158 (680)
.+...... ...++.-++|+|+++.........+...+...+..+++++++... .+..... .+..
T Consensus 87 ~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~--SRc~ 151 (319)
T PLN03025 87 MFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ--SRCA 151 (319)
T ss_pred HHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH--Hhhh
Confidence 21100000 001345699999998877666666766666555567777766543 2211111 2236
Q ss_pred ceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 159 GYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 159 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
.+.++++++++....+...+...+...++ +.+..|++.++|....+.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~~---~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYVP---EGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 78999999999999999988666554443 567899999999876443
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.8e-10 Score=110.50 Aligned_cols=204 Identities=19% Similarity=0.086 Sum_probs=131.9
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccc--cCcCCc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEI--GNLKHM 432 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~l~~L 432 (680)
+.++.+.+++.........+..+.|++++.|+|+.|.. .....+-.....+|+|+.|+|+.|.+....++. ..+++|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~-~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF-HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhH-HhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 35667777766654443335777889999999988743 244445566788899999999998877443332 246888
Q ss_pred ceeccccccCCC-ccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccc--cccCcccccceeecc
Q 042863 433 RYLDLSRNYKIK-KLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQD--SGIGCLVSLRCLIIS 509 (680)
Q Consensus 433 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~ 509 (680)
+.|.|+.|.+.. .+-..+..+|.|+.|+|..|.....-......+..|+.|++++|++-..+ ...+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 888888886552 34444567888888888887533222222344566888888888877664 556778888888888
Q ss_pred cccCcc-cchhh-----ccCCcccceeecccccCccc-CCccCCCCCCcCeEeecCC
Q 042863 510 HCRNLE-YLFDD-----IDQLRVLRSLLIAGCPCLIS-LPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 510 ~~~~~~-~~~~~-----~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 559 (680)
.|..-+ ..|+. ...+++|++|++..|++... ....+..+++|+.|.+..+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 765222 12222 34567888888888876322 1123445566666655444
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=4.3e-08 Score=103.63 Aligned_cols=198 Identities=15% Similarity=0.200 Sum_probs=118.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
+||.+..++.|.+.+.. +.-...+.++|+.|+||||+|+.+++...-... +..--+ ...........+.+...
T Consensus 18 VIGQe~vv~~L~~al~~-----gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 18 LVGQEHVVRALTHALEQ-----QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDAG 90 (700)
T ss_pred HcCcHHHHHHHHHHHHh-----CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHcC
Confidence 48999999999999965 233456788999999999999999874211000 000000 00001111111111111
Q ss_pred hcC-----CCCCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHh
Q 042863 81 ITG-----QNQGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASV 150 (680)
Q Consensus 81 l~~-----~~~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~ 150 (680)
-+. +......++++.+.+.... .++.-++|+|+++..+....+.+...+..-...+++|++|.+. .+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 100 0011123344443333321 3456699999999888888888777777666666666655544 33333
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
+. .++..+.++.++.++..+.+.+.....+...+ ++.+..|++.++|.|.....+
T Consensus 171 Ir--SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VL--SRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HH--HHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 33577999999999999999988765544333 355688999999999754443
No 61
>PTZ00202 tuzin; Provisional
Probab=98.91 E-value=6.3e-08 Score=96.56 Aligned_cols=166 Identities=11% Similarity=0.194 Sum_probs=103.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+||+.|+..+...|... +.+.++++.|.|++|+|||||++.+... .. + ..++++.. +..++++.++.+
T Consensus 264 FVGReaEla~Lr~VL~~~---d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~qL~vNpr---g~eElLr~LL~A 332 (550)
T PTZ00202 264 FVSREAEESWVRQVLRRL---DTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-PAVFVDVR---GTEDTLRSVVKA 332 (550)
T ss_pred CCCcHHHHHHHHHHHhcc---CCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c-eEEEECCC---CHHHHHHHHHHH
Confidence 899999999999999753 3345679999999999999999999873 22 1 13344433 678999999999
Q ss_pred hcCCCCCC--cCHHHHHHHHHHHh-C-CceEEEEEecCCCCChh-HHHHHHHhcCCCCCCCEEEEecCchHHHHhhccCC
Q 042863 81 ITGQNQGD--LDIEQLQRILRVCL-N-GKRYLLVMDDVWNEDPK-VWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTRG 155 (680)
Q Consensus 81 l~~~~~~~--~~~~~~~~~~~~~l-~-~~~~llvlD~~~~~~~~-~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~~ 155 (680)
|+.+.... .-..++.+.+.+.. . +++.+||+-==...+.. .+..... +.-...-|+|++----+.+....-..+
T Consensus 333 LGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~~~~~lp 411 (550)
T PTZ00202 333 LGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTIANTLLP 411 (550)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcchhcccCc
Confidence 99632211 11233333333332 2 56666665422112211 1222222 222234677877544333332222335
Q ss_pred CCCceeCCCCChhhHHHHHHHHh
Q 042863 156 GTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 156 ~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
+...+-+++|+.++|.++.+...
T Consensus 412 rldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 412 RLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cceeEecCCCCHHHHHHHHhhcc
Confidence 55779999999999999988765
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=4.6e-08 Score=100.82 Aligned_cols=190 Identities=17% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+..++.+..++... .-...+.++|++|+||||+|+.+++... ...... ...+... .....+...
T Consensus 20 vVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~--~~pCg~C----~sC~~i~~g 87 (484)
T PRK14956 20 VIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIG--NEPCNEC----TSCLEITKG 87 (484)
T ss_pred HhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccC--ccccCCC----cHHHHHHcc
Confidence 478898999998888651 2234689999999999999999987421 111100 0001111 111122111
Q ss_pred hcCCC-----CCCcCHHHHHHHHHH----HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHh
Q 042863 81 ITGQN-----QGDLDIEQLQRILRV----CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASV 150 (680)
Q Consensus 81 l~~~~-----~~~~~~~~~~~~~~~----~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~ 150 (680)
...+. ......+.+.+.+.. ...++.-++|+|+++......++.+...+...+..+.+|++|.+. .+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 11110 011122222222221 123556799999999988888888877776655566666555543 33222
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
+. .++..+.+.+++.++..+++...+...+.... ++.+..|++.++|.+.-.
T Consensus 168 I~--SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 168 IL--SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HH--hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 22 34567999999999999999998765544333 367789999999999733
No 63
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.1e-10 Score=110.31 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=79.0
Q ss_pred hhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcc---cccccccCcCCcceeccccccCCCccChhh-c
Q 042863 376 LSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIE---ALPKEIGNLKHMRYLDLSRNYKIKKLPNAI-C 451 (680)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~ 451 (680)
-.+++.|+.+.|.++....... ......|++++.|+|+.|-+. .+-.....+|+|+.|+++.|.+........ .
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~--~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGI--EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccch--hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 3456667777776654322221 134566777777777777555 222334567777777777775443322211 2
Q ss_pred CCCCCcEEecCCccccc-cCcccccccCcccEEEecccc-ccccccccCcccccceeecccccCccc-chhhccCCcccc
Q 042863 452 ELQSLQTLNLEECLELE-ELPKDIRYLVSLRVFEVTTKQ-KSLQDSGIGCLVSLRCLIISHCRNLEY-LFDDIDQLRVLR 528 (680)
Q Consensus 452 ~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 528 (680)
.+++|+.|.|+.|.+.. .+...+..+++|..|++..|. +........-++.|+.|++++|+.+.. ....++.++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 35566666666664432 122223344555555555553 111111222344555555555443331 113344455555
Q ss_pred eeeccccc
Q 042863 529 SLLIAGCP 536 (680)
Q Consensus 529 ~L~l~~~~ 536 (680)
.|+++.|.
T Consensus 275 ~Lnls~tg 282 (505)
T KOG3207|consen 275 QLNLSSTG 282 (505)
T ss_pred hhhccccC
Confidence 55555443
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.89 E-value=1.1e-07 Score=97.07 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=112.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEe--CCcCCHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICI--SEDFGERQIMTKII 78 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (680)
++|+++.++.+..++.. +..+.+.++|++|+|||++|+.+++.. ....+. ..++.+ +...... .....+
T Consensus 19 ~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~~i 89 (319)
T PRK00440 19 IVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRNKI 89 (319)
T ss_pred hcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHHHH
Confidence 57999999999999865 234467999999999999999998732 122221 122322 2211111 111111
Q ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCCCC
Q 042863 79 KSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRGGT 157 (680)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~~~ 157 (680)
..+....+ .....+-+|++|+++.........+...+......+.+|+++... ....... .+.
T Consensus 90 ~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~--sr~ 153 (319)
T PRK00440 90 KEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ--SRC 153 (319)
T ss_pred HHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH--HHh
Confidence 11110000 001235689999997766656666777776655566777766432 1111111 123
Q ss_pred CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 158 TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 158 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
..++++++++++...+++..+...+...++ +.+..+++.++|.+.-+....
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~---~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEITD---DALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 568999999999999999988665544333 667899999999987544333
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=7.9e-08 Score=101.85 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=114.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+...+.. +.-+..+.++|++|+||||+|+.+++...-.......+|.+- ....+...
T Consensus 16 vvGq~~v~~~L~~~i~~-----~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~--------sc~~i~~~ 82 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQ-----GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE--------SCLAVRRG 82 (504)
T ss_pred hcChHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh--------hhHHHhcC
Confidence 47889998999888865 223456699999999999999999874221111111122110 00000000
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH-----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHH
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC-----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVAS 149 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~-----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~ 149 (680)
.+.. .......+.+.. +.+. ..+++-++|+|+++......++.+...+......+.+|+++... .+..
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCCceEEecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 0000 001112222222 2221 12455689999998777777777877777765565566655443 2222
Q ss_pred hhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 150 VMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
.+. .+...+.+.++++++..+++.+.+...+...+ ++.+..|++.++|.+.-+.
T Consensus 162 ~I~--SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 162 TIL--SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred HHh--cceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 221 23467999999999999999998866544433 3667899999999997554
No 66
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=9.9e-08 Score=99.63 Aligned_cols=182 Identities=17% Similarity=0.207 Sum_probs=118.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchh------------------h-hhcCCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQR------------------V-EEHFELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~------------------~-~~~~~~~~~ 61 (680)
+||.+...+.+...+.. +.-+..+.++|+.|+||||+|+.+++... + ...+..++.
T Consensus 15 liGQe~vv~~L~~a~~~-----~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 15 LVGQDVLVRILRNAFTL-----NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 47899988888888854 23355799999999999999999986310 0 012233445
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEe
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVT 141 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiT 141 (680)
++......... .+.++..... ....++.-++|+|+++.......+.+...+...+..+++|++
T Consensus 90 idaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 54433322222 2222221100 011345568999999887777778888888877667777666
Q ss_pred cCc-hHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHH
Q 042863 142 TRS-NKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRT 209 (680)
Q Consensus 142 sR~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 209 (680)
|.+ ..+...+. .+...+++.+++.++..+.+.+.+...+...++ +.+..|++.++|.+..+..
T Consensus 153 tte~~Kl~~tI~--SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~---eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 153 TTEVKKIPVTII--SRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDE---ESLKLIAENSSGSMRNALF 216 (491)
T ss_pred eCChHHHHHHHH--HhheeeecccccHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 543 33333222 334778999999999999999988766554443 6678999999998874433
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=6.5e-08 Score=104.14 Aligned_cols=194 Identities=15% Similarity=0.188 Sum_probs=119.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
+||.+..++.+.+.+.. +.-...+.++|+.|+||||+|+.+++...-...+. ...+......+.+...
T Consensus 18 ivGQe~vv~~L~~~l~~-----~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 18 VVGQEHVLTALANALDL-----GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcC
Confidence 58999999999998865 12334568999999999999999987421111110 0011111222222211
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~ 150 (680)
-+.+ ......++++...+... ..++.-++|+|+++.......+.+...+-..+..+++|++|.+.. +...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 1110 00012233333222221 245667999999999888888888887777666776766665543 3222
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+. .++..+.+++++.++..+++.......+.... ++....|++.++|.+.....+.
T Consensus 166 I~--SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 IL--SRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HH--hhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 34578999999999999999987755433332 3566789999999887444443
No 68
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=1e-07 Score=100.98 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=113.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|++..++.+.+.+.. +..++.+.++|+.|+||||+|+.+++... ... |... .........+.+...
T Consensus 18 IIGQe~iv~~L~~aI~~-----~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~-----~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 18 IIGQELIKKILVNAILN-----NKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN-----PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC-----CCCC-CCCcccHHHHHHHcC
Confidence 47999999999998854 23346788999999999999999987421 111 1110 011111222222221
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~ 150 (680)
.... .......+++...+... ..+++-++|+|+++.........+...+...+..+.+|++|... .+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 1111 00112233332222211 12233469999998877777777777777665566565555433 33322
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
.. .+...+++.++++++....+...+...+...++ +.+..+++.++|.+.-+
T Consensus 166 I~--SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~---eal~~La~lS~GdlR~A 217 (605)
T PRK05896 166 II--SRCQRYNFKKLNNSELQELLKSIAKKEKIKIED---NAIDKIADLADGSLRDG 217 (605)
T ss_pred HH--hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHH
Confidence 22 234779999999999999999887655433333 56789999999987633
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1.7e-07 Score=98.71 Aligned_cols=193 Identities=15% Similarity=0.209 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCc-EEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFEL-KIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++|.+..++.+...+.. +.-+..+.++|++|+||||+|+.+++...-...... ..+..+ ........+..
T Consensus 23 liGq~~vv~~L~~ai~~-----~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i~~ 93 (507)
T PRK06645 23 LQGQEVLVKVLSYTILN-----DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISFNN 93 (507)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHHhc
Confidence 47888888888887754 233567899999999999999999874211111000 000000 00011111111
Q ss_pred HhcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE-ecCchHHHH
Q 042863 80 SITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV-TTRSNKVAS 149 (680)
Q Consensus 80 ~l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii-TsR~~~~~~ 149 (680)
..+.. .......+++...+... +.+++-++|+|+++......++.+...+...+..+.+|+ |++...+..
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 10000 00112233333333222 234567899999988777778888777777666666655 444444433
Q ss_pred hhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 150 VMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
... .+...+++.+++.++..+++...+...+...+ ++.+..|++.++|.+.-+
T Consensus 174 tI~--SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 174 TII--SRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHH--hcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 332 23467899999999999999998876654433 356688999999988644
No 70
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=7.9e-08 Score=97.67 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=119.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEE-E--EEeCCcCCHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKI-W--ICISEDFGERQIMTK 76 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~-~--~~~~~~~~~~~~~~~ 76 (680)
++|.++..+.+.+.+.. +.-+....++|+.|+||+++|..+++.. .... ..... - .............+.
T Consensus 21 iiGq~~~~~~L~~~~~~-----~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L-lc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 21 LFGHAAAEAALLDAYRS-----GRLHHAWLIGGPQGIGKATLAYRMARFL-LATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred ccChHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHH-hCCCCCCCCccccccccccCCCCChHHHH
Confidence 47999999999998865 2335568899999999999999998742 1111 00000 0 000000111122233
Q ss_pred HHHHhcCC---------C-----CCCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCE
Q 042863 77 IIKSITGQ---------N-----QGDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSK 137 (680)
Q Consensus 77 ~~~~l~~~---------~-----~~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~ 137 (680)
+...-+++ + .....++++.+ +.+.+ .+.+-++|+|+++..+......+...+..-+.++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 32222221 0 01223455433 33333 34567999999999998888888888877666666
Q ss_pred EEEecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 138 ILVTTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 138 iiiTsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+|++|.++. +... ...+...+.+++++.++..+++....... + .+.+..++..++|.|.....+.
T Consensus 174 ~IL~t~~~~~llpt--i~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 174 FLLVSHAPARLLPT--IRSRCRKLRLRPLAPEDVIDALAAAGPDL-----P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEECCchhchHH--hhccceEEECCCCCHHHHHHHHHHhcccC-----C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 777776654 2222 23456789999999999999998764211 1 1223688999999998665543
No 71
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.1e-07 Score=96.18 Aligned_cols=194 Identities=11% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc---CCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH---FELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.++..+.+...+.. +..+..+.++|+.|+||||+|+.+++.. .... +... ............+.+
T Consensus 25 l~Gh~~a~~~L~~a~~~-----grl~ha~L~~G~~G~GKttlA~~lA~~L-lc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 25 LFGHEEAEAFLAQAYRE-----GKLHHALLFEGPEGIGKATLAFHLANHI-LSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCeeEeeECCCCCCHHHHHHHHHHHH-cCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 47899999999999865 2345578999999999999999998731 1110 1101 011111122334444
Q ss_pred HHHhcCC---------C-----CCCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEE
Q 042863 78 IKSITGQ---------N-----QGDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKI 138 (680)
Q Consensus 78 ~~~l~~~---------~-----~~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~i 138 (680)
...-+++ . .....++++. .+.+.+ .++.-++|+|+++..+....+.+...+..-+....+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 3332211 0 1123345544 333333 345569999999998888888887777765555555
Q ss_pred EEecCch-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 139 LVTTRSN-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 139 iiTsR~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
|++|..+ .+.... ..++..+.+++++.++..+++........ ..++.+..+++.++|.|.....+.
T Consensus 175 iLit~~~~~llptI--rSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTI--RSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHH--HhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555443 332222 24567899999999999999988542211 113556889999999998555443
No 72
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.85 E-value=6.8e-08 Score=92.81 Aligned_cols=156 Identities=17% Similarity=0.099 Sum_probs=97.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
..+.++++|++|+|||+||+.+++. ....-..+.++++.... . . + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~---~---~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPL---L---A----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhH---H---H----H------------------hh-cc
Confidence 3568999999999999999999883 32222345666654321 0 0 0 01 12
Q ss_pred ceEEEEEecCCCCChhHHHHHHHhcCCC-CCC-CEEEEecCchHHHHh-----hccCCCCCceeCCCCChhhHHHHHHHH
Q 042863 105 KRYLLVMDDVWNEDPKVWDKLKSLLSGG-AKG-SKILVTTRSNKVASV-----MGTRGGTTGYNLQGLPLEDCLSLFMKC 177 (680)
Q Consensus 105 ~~~llvlD~~~~~~~~~~~~l~~~l~~~-~~~-~~iiiTsR~~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~l~~~~ 177 (680)
..-+||+||++..+......+...+... ..+ ..+++|++....... .........+.++++++++...++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3347889999765554545555555432 123 346677665331111 101112257899999999888888876
Q ss_pred hcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 178 AFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
........+ ++....+++...|++..+..+...+
T Consensus 170 ~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 544444433 3677899999999999888777655
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.6e-07 Score=98.72 Aligned_cols=185 Identities=19% Similarity=0.218 Sum_probs=112.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-------------------CCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-------------------FELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------~~~~~~ 61 (680)
++|++...+.+...+.. +.-+..+.++||+|+||||+|+.+++...-... +..+..
T Consensus 16 ivGq~~i~~~L~~~i~~-----~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 16 VVGQDHVKKLIINALKK-----NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 58999888888888755 223456889999999999999999874211110 111222
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH-HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV 140 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii 140 (680)
++......... ++++.... .. ...+++-++|+|+++.......+.+...+...+..+.+|+
T Consensus 91 l~aa~~~gid~-iR~i~~~~-----------------~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 91 LDAASNRGIDE-IRKIRDAV-----------------GYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EeCcccCCHHH-HHHHHHHH-----------------hhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 22221111111 11111111 10 1234567999999977666666677777766555555555
Q ss_pred ecCch-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC-hhHHHHHHhh
Q 042863 141 TTRSN-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI-PLAVRTLGSL 213 (680)
Q Consensus 141 TsR~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~~ 213 (680)
+|.++ .+..... .+...+.+.++++++....+++.+...+...+ ++++..|++.++|. +.++..+-..
T Consensus 153 attn~~kl~~~L~--SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 153 ATTNLEKVPPTII--SRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EeCChHhhhHHHh--cCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 54443 3322222 33467899999999999999998865544333 36678899888665 5566666543
No 74
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.83 E-value=1.7e-07 Score=89.97 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=126.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc----CCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH----FELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+.++.+.+.+..+ .....+.+.|+|++|.|||++++++...+-.... .-.++.+.....++...++..++.++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 4566666667653 3455678999999999999999999875322111 12477888888999999999999999
Q ss_pred cCCCCCCcCHHHHHHHHHHHhCCce-EEEEEecCCCCChh------HHHHHHHhcCCCCCCCEEEEecCchHHHHhhc--
Q 042863 82 TGQNQGDLDIEQLQRILRVCLNGKR-YLLVMDDVWNEDPK------VWDKLKSLLSGGAKGSKILVTTRSNKVASVMG-- 152 (680)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~-~llvlD~~~~~~~~------~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~-- 152 (680)
+.+.............+.+.++.-. =+||+|++|+.-.+ ..-....++.+.-.-+.|.+-|++...+-...
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 9887666677766666666665544 48999999772111 11223333444433455666666542211110
Q ss_pred cCCCCCceeCCCCChh-hHHHHHHHHhccc--CCCCCchHHHHHHHHHHhhCCChh
Q 042863 153 TRGGTTGYNLQGLPLE-DCLSLFMKCAFKE--ERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 153 ~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
...+...+.++.+..+ +...|+......- ..+..-...+.+..|+..++|+.=
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 1134467888888775 5666665443222 111112345788999999999874
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1e-07 Score=102.04 Aligned_cols=179 Identities=15% Similarity=0.227 Sum_probs=115.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-------------------cCCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-------------------HFELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~~~~~~ 61 (680)
++|++..++.|..++.. +.-...+.++|+.|+||||+|+.+++...-.. .|..++.
T Consensus 18 IIGQe~vv~~L~~ai~~-----~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 18 LVGQEHVVKALQNALDE-----GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred HcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 48999999999999865 23356789999999999999999987421110 1111222
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCE
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSK 137 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~ 137 (680)
++... ....+.+...+... ..+++-++|+|+++..+......+...+......++
T Consensus 93 idaAs---------------------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 93 IDAAS---------------------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred Eeccc---------------------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 22211 12222232222211 234556899999987776666677777766555667
Q ss_pred EEEecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 138 ILVTTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 138 iiiTsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
+|++|.+.. +...+ ..++..+.+++++.++..+.+.+.+...+...++ +.+..|++.++|.+.-+...
T Consensus 152 fILaTtd~~kL~~TI--rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~---eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 152 FILATTDPHKVPVTV--LSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEP---PALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEEeCCccccchHH--HHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHhCCCHHHHHHH
Confidence 777665442 22111 1234668899999999999999988666544433 66789999999998744433
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.82 E-value=1.4e-07 Score=103.83 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=100.9
Q ss_pred CCCchhHHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDRE---KIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~---~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
|+|++..+. .+.+.+.. +....+.++|++|+||||+|+.+++ .....| +.++... ... ...
T Consensus 30 ~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f---~~lna~~-~~i-~di--- 93 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHF---SSLNAVL-AGV-KDL--- 93 (725)
T ss_pred hcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcc---eeehhhh-hhh-HHH---
Confidence 578888774 45566643 3456789999999999999999987 333332 1222211 000 001
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHHh--CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE--ecCchHHHHhhcc
Q 042863 78 IKSITGQNQGDLDIEQLQRILRVCL--NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV--TTRSNKVASVMGT 153 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii--TsR~~~~~~~~~~ 153 (680)
.+......+.+ .+++.++|+||++.......+.+...+.. +..++| ||.++...-.-..
T Consensus 94 --------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 94 --------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred --------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHhhhhhHh
Confidence 11111111111 24567999999988776666666554443 444444 4444422111111
Q ss_pred CCCCCceeCCCCChhhHHHHHHHHhcccC----CCCCchHHHHHHHHHHhhCCChhHH
Q 042863 154 RGGTTGYNLQGLPLEDCLSLFMKCAFKEE----RDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 154 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
..+...+.+++++.++...++++...... .....-.++....|++.+.|...-+
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 12346789999999999999998775210 0111122466789999999987633
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.82 E-value=9.5e-08 Score=91.72 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=95.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
.+.++++|++|+|||+|++.+++ ........+.|+++...... ..++.+.+ . .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~~--------------------~~~~~~~~----~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAWF--------------------VPEVLEGM----E-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhhh--------------------hHHHHHHh----h-h
Confidence 35899999999999999999887 33333345677766431100 01111111 1 1
Q ss_pred eEEEEEecCCCCCh-hHH-HHHHHhcCCC--CCCCEEEEecCchHHH------HhhccCCCCCceeCCCCChhhHHHHHH
Q 042863 106 RYLLVMDDVWNEDP-KVW-DKLKSLLSGG--AKGSKILVTTRSNKVA------SVMGTRGGTTGYNLQGLPLEDCLSLFM 175 (680)
Q Consensus 106 ~~llvlD~~~~~~~-~~~-~~l~~~l~~~--~~~~~iiiTsR~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~l~~ 175 (680)
.-+|++||++.... ..| ..+...+... ....++|+||+.+... ...+....-..++++++++++-.++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 24789999965321 122 2233333321 2234689999866322 111111222578999999999999998
Q ss_pred HHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 176 KCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
+.+.......+ ++++..|++++.|....+..+...+
T Consensus 178 ~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 86654433333 3777899999998887766665444
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.81 E-value=2e-07 Score=86.55 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=95.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhh-------------------cCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEE-------------------HFELKIWICISEDFGERQIMTKIIKSITGQN 85 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (680)
-+..+.++|+.|+|||++|+.++....-.. .++...++.....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~------------------ 74 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ------------------ 74 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC------------------
Confidence 346788999999999999999987321110 1212222222111
Q ss_pred CCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCCCCCce
Q 042863 86 QGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRGGTTGY 160 (680)
Q Consensus 86 ~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~~~~~~ 160 (680)
....+++...+... ..+.+-++|+||++.......+.+..++...+..+.+|+++++. .+..... .+...+
T Consensus 75 --~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~--sr~~~~ 150 (188)
T TIGR00678 75 --SIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR--SRCQVL 150 (188)
T ss_pred --cCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH--hhcEEe
Confidence 12223332222221 12456689999998877777778888887766566677766654 2222222 234679
Q ss_pred eCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 161 NLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 161 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
.+.+++.++..+++.+.. .+ ++.+..|++.++|.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~g------i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQG------IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred eCCCCCHHHHHHHHHHcC------CC---HHHHHHHHHHcCCCcc
Confidence 999999999999998861 12 3668899999999986
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2e-07 Score=100.27 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=118.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc--CCcEEEEEeCCcCCHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH--FELKIWICISEDFGERQIMTKII 78 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (680)
+||.+..++.|.+++.. +.-...+.++|+.|+||||+|+.+++...-... ..+.-. ..++.....+.+-
T Consensus 18 viGQe~vv~~L~~~l~~-----~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~ 88 (618)
T PRK14951 18 MVGQEHVVQALTNALTQ-----QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDID 88 (618)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHH
Confidence 58999999999999865 233456789999999999999999774211000 000000 0111112222221
Q ss_pred HHhcCC-----CCCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHH
Q 042863 79 KSITGQ-----NQGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVA 148 (680)
Q Consensus 79 ~~l~~~-----~~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~ 148 (680)
..-+.+ ......++++.+.+.... .++.-++|+|+++......++.+...+..-+..+.+|++|.+. .+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 111110 011123333333333211 2344589999999988888888887777766666676665443 332
Q ss_pred HhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 149 SVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
... ..+...+.++++++++..+.+.+.+...+...+ ++.+..|++.++|.+..+..+
T Consensus 169 ~TI--lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 169 VTV--LSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHH--HHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 222 234578999999999999999988866654443 356789999999988755443
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.80 E-value=4.3e-07 Score=94.03 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=114.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh--c-----------------CCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE--H-----------------FELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~-----------------~~~~~~ 61 (680)
++|.++.++.+.+.+.. +.-+..+.++|++|+|||++|+.++....-.. . ...+.+
T Consensus 16 iig~~~~~~~l~~~~~~-----~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKN-----GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 47999999999998865 23345788999999999999999987421000 0 112333
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEe
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVT 141 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiT 141 (680)
++....... ...++++..+... ...+.+-++|+|+++.........+...+...+..+.+|++
T Consensus 91 ~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 91 IDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 332211111 1122222221100 01234558899999766666667777777665556666666
Q ss_pred cCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 142 TRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 142 sR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
|.+.. +..... .+...++++++++++..+++...+...+...+ ++.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~--sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATIL--SRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHH--hheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 65543 222222 22367889999999999999987755543333 3677899999999997665554
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.4e-07 Score=100.15 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=116.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh-------------------hcCCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE-------------------EHFELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~~~~~~~ 61 (680)
+||.+..++.+..++.. +.-+....++|+.|+||||+|+.+++...-. ..+..++.
T Consensus 18 ivGq~~v~~~L~~~~~~-----~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 18 VIGQAPVVRALSNALDQ-----QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred hcCCHHHHHHHHHHHHh-----CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 48999999999999965 2234457899999999999999998742111 11222333
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEe
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVT 141 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiT 141 (680)
++......++. .++++..+.- ....++.-++|+|+++.......+.+...+...+..+++|++
T Consensus 93 idaas~~~v~~-iR~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 93 VDAASRTKVED-TRELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EcccccCCHHH-HHHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 33322222221 1222221100 011345568999999888887888787777776667777766
Q ss_pred cCch-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 142 TRSN-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 142 sR~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
|.++ .+.... ..+...+++++++.++..+.+...+...+.... ++.+..|++.++|.+.-+...
T Consensus 156 ttd~~kl~~tI--~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 156 TTDHHKLPVTV--LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred ECChHhchHHH--HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 5543 222221 233467899999999999988888766544433 356688999999988744333
No 82
>PRK08727 hypothetical protein; Validated
Probab=98.80 E-value=1.7e-07 Score=89.84 Aligned_cols=156 Identities=15% Similarity=0.053 Sum_probs=94.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++++|++|+|||.|++.+++ ...+....+.|++..... ..+.. .+.. + ..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~~~---~~~~~--------------------~~~~-l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQAAA---GRLRD--------------------ALEA-L-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHHhh---hhHHH--------------------HHHH-H-hc
Confidence 35699999999999999999987 443444456777643211 00111 1111 1 23
Q ss_pred eEEEEEecCCCCC--hhHHHHHHHhcCC-CCCCCEEEEecCchHH------HHhhccCCCCCceeCCCCChhhHHHHHHH
Q 042863 106 RYLLVMDDVWNED--PKVWDKLKSLLSG-GAKGSKILVTTRSNKV------ASVMGTRGGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 106 ~~llvlD~~~~~~--~~~~~~l~~~l~~-~~~~~~iiiTsR~~~~------~~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
.-+||+||++... ......+...+.. ...+..+|+|++.... ....+.......+.++++++++..+++++
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996532 1222233344433 2235569999886421 11111112235789999999999999999
Q ss_pred HhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 177 CAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
.+.......+ ++....|+++++|-...+..+-
T Consensus 174 ~a~~~~l~l~---~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 174 RAQRRGLALD---EAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred HHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHH
Confidence 7755433333 3677899999988776553333
No 83
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=4.6e-09 Score=94.08 Aligned_cols=104 Identities=28% Similarity=0.367 Sum_probs=29.1
Q ss_pred cCcceeEEEeCCCCccccccccc-CcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccc-cccCcccE
Q 042863 405 KSQFLRVLNLSGSAIEALPKEIG-NLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDI-RYLVSLRV 482 (680)
Q Consensus 405 ~~~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~ 482 (680)
++..+++|+|.+|.|+.+. .++ .+.+|+.|++++|. +..++. +..+++|++|++++|... .+...+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 4445677777777766553 343 46667777777663 444443 556677777777766433 344333 34667777
Q ss_pred EEecccccccc--ccccCcccccceeeccccc
Q 042863 483 FEVTTKQKSLQ--DSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 483 L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~ 512 (680)
|++++|.+..+ ...+..+++|+.|++.+|+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 77777766544 2334455566666666554
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2.5e-07 Score=94.88 Aligned_cols=192 Identities=11% Similarity=0.142 Sum_probs=114.0
Q ss_pred CCCchhHHHHHHHHHhcCCC----CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS----GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~----~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (680)
++|.+..++.+.+.+..... ....-+..+.++|++|+|||++|+.+++... ... .. ..........+.
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~-c~~-~~------~~~Cg~C~~C~~ 78 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ-CTD-PD------EPGCGECRACRT 78 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-CCC-CC------CCCCCCCHHHHH
Confidence 47999999999999976320 0011456788999999999999999987311 110 00 001111112222
Q ss_pred HHHHhcCC------CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-
Q 042863 77 IIKSITGQ------NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN- 145 (680)
Q Consensus 77 ~~~~l~~~------~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~- 145 (680)
+....+++ .......+++...+... ..+++-++|+|+++..+....+.+...+...+.+..+|++|.+.
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~ 158 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPE 158 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChH
Confidence 22111111 00112233333322221 12445588899998888777777777776666666666666654
Q ss_pred HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 146 KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
.+...+. .++..+.+++++.++..+.+.+..+ .. ++.+..++..++|.|.....+
T Consensus 159 ~llpTIr--SRc~~i~f~~~~~~~i~~~L~~~~~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 159 DVLPTIR--SRCRHVALRTPSVEAVAEVLVRRDG-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HChHHHH--hhCeEEECCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3332322 3457899999999999988875331 11 255688999999999755444
No 85
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=2.3e-07 Score=96.54 Aligned_cols=200 Identities=13% Similarity=0.187 Sum_probs=117.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE-eCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC-ISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (680)
++|.+...+.+.+.+.. +.-+..+.++|++|+||||+|+.+++...-...++..-|.. ...........+.+..
T Consensus 18 iiGq~~~~~~L~~~~~~-----~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 18 ITAQEHITRTIQNSLRM-----GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred ccChHHHHHHHHHHHHh-----CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 47889999999888865 22344588899999999999999987422111111111110 0111111122222222
Q ss_pred HhcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEec-CchHHHH
Q 042863 80 SITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTT-RSNKVAS 149 (680)
Q Consensus 80 ~l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTs-R~~~~~~ 149 (680)
..... .......+++.+..... ..+.+-++|+|+++......++.+..++...+..+.+|+++ +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 21111 01112234444332222 23455688999998877777778887777665566665554 4333332
Q ss_pred hhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 150 VMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
... .+...++++++++++..+.+...+...+...+ ++.+..|++.++|.+.-+...
T Consensus 173 tl~--sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 173 TIA--SRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HHH--HHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 222 12356889999999999999888755443333 367789999999988754443
No 86
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=7.2e-10 Score=112.03 Aligned_cols=175 Identities=28% Similarity=0.352 Sum_probs=144.3
Q ss_pred cCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 379 LGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
+..-...+++.|. ...++..++.|..|+.+.|+.|.+..+|..+.++..|.+||++.| .+..+|..++.|| |+.
T Consensus 74 ltdt~~aDlsrNR----~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNR----FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccchhhhhccccc----cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-cee
Confidence 3334455677664 233444577888899999999999999999999999999999998 4667888888886 888
Q ss_pred EecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCc
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCL 538 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 538 (680)
|-+++| .++.+|..++....|..|+.+.|.+...+..++.+.+|+.|.+..|+ +..+|..+..+ .|..||+++|+ +
T Consensus 148 li~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNk-i 223 (722)
T KOG0532|consen 148 LIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNK-I 223 (722)
T ss_pred EEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCc-e
Confidence 888876 57789999998899999999999999999999999999999999866 56688888855 48999999886 4
Q ss_pred ccCCccCCCCCCcCeEeecCCCCcc
Q 042863 539 ISLPPAMRYLSSLETLMFVECESLS 563 (680)
Q Consensus 539 ~~~~~~~~~~~~L~~L~l~~~~~~~ 563 (680)
..+|..|.+|+.|++|.|.+|+--+
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eecchhhhhhhhheeeeeccCCCCC
Confidence 6788889999999999999987443
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=2.5e-07 Score=99.10 Aligned_cols=179 Identities=17% Similarity=0.242 Sum_probs=113.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-------------------cCCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-------------------HFELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~~~~~~ 61 (680)
++|.+..++.+..++.. +.-...+.++|++|+||||+|+.+++...-.. .|..+++
T Consensus 18 ivGq~~v~~~L~~~i~~-----~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 18 LVGQEHVVRALTNALEQ-----QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 47899999999988865 22345568999999999999999987421111 1112222
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCE
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSK 137 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~ 137 (680)
++.... ...+++...+... ..+++-++|+|+++.......+.+...+...+..+.
T Consensus 93 i~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 93 VDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 322211 1222222222211 134567999999988877777777777777666666
Q ss_pred EEEecCch-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHH
Q 042863 138 ILVTTRSN-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTL 210 (680)
Q Consensus 138 iiiTsR~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~ 210 (680)
+|++|.++ .+...+ ..+...+++++++.++..+.+.+.+...+.... ++.+..|++.++|.+. ++..+
T Consensus 152 fIL~t~d~~kil~tI--~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTV--LSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 66655443 222111 122367899999999999999887765544333 3566889999999886 44443
No 88
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.75 E-value=1.2e-07 Score=84.63 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+||+++++.+...+.. ...+.+.|+|++|+|||++++++++. .......++++++................
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 4889999999998865 23468999999999999999999984 32223456677665433222111111000
Q ss_pred cCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC------CCCCEEEEecCchH
Q 042863 82 TGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG------AKGSKILVTTRSNK 146 (680)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~------~~~~~iiiTsR~~~ 146 (680)
............++.++|+||++.........+...+... ..+..+|+|+....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999754333333333333332 35778888887653
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=7.3e-10 Score=107.97 Aligned_cols=263 Identities=18% Similarity=0.196 Sum_probs=181.5
Q ss_pred hhhc-CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCc-c--cccccccCcCCcceeccccccCCCccC--hh
Q 042863 376 LSDL-GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAI-E--ALPKEIGNLKHMRYLDLSRNYKIKKLP--NA 449 (680)
Q Consensus 376 ~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~--~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 449 (680)
...| ..|+.|.+.++. ......+......||+++.|.+.+|.. + .+...-..|++|++|++..|...+... ..
T Consensus 133 ~~Rcgg~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 133 ISRCGGFLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred hhhhccccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 3344 358889898874 345556667788999999999999863 2 122223469999999999987665432 22
Q ss_pred hcCCCCCcEEecCCcccccc--CcccccccCcccEEEecccccccc---ccccCcccccceeecccccCcccch--hhcc
Q 042863 450 ICELQSLQTLNLEECLELEE--LPKDIRYLVSLRVFEVTTKQKSLQ---DSGIGCLVSLRCLIISHCRNLEYLF--DDID 522 (680)
Q Consensus 450 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~ 522 (680)
...|++|++|++++|..... +......+.+++.+...+|.-... ...-..+.-+..+++.+|..++... ..-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 45799999999999976654 223345566677776666543222 1122345567777777887666532 2334
Q ss_pred CCcccceeecccccCcccC--CccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCccc
Q 042863 523 QLRVLRSLLIAGCPCLISL--PPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLEL 600 (680)
Q Consensus 523 ~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 600 (680)
.+..|+.+..++|...+.. -.-..++++|+.|-+..|.+.+ +.-+.....+++.|+.+++..|..+..-
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs---------d~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS---------DRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh---------hhhhhhhhcCChhhhhhcccccceehhh
Confidence 5788999999998775532 2334688999999999998765 2234455677899999999999643332
Q ss_pred chhhhhhhcccCCccceeeeccCCCCCCC--------CcCCCCCCeEEEcCCccccccc
Q 042863 601 PQWLLQESLRNFQALEGLVIGNCPKLLSL--------PEDMLHLKTLRIRGCPALSDRC 651 (680)
Q Consensus 601 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~l--------~~~~~~L~~l~l~~c~~l~~~~ 651 (680)
...+.-.+|+.|++|.+++|..+++- ..+...|..+.+++||.+++..
T Consensus 363 ---tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 363 ---TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred ---hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 12234458999999999999876643 3466789999999999887753
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=5.6e-07 Score=97.59 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=112.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+...+.. +.-...+.++||.|+|||++|+.+++..- ..... . ...+..........
T Consensus 20 IiGQe~~v~~L~~aI~~-----~rl~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~-------~~~pC~~C~~~~~~ 85 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKS-----NKISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-D-------LLEPCQECIENVNN 85 (725)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-C-------CCCchhHHHHhhcC
Confidence 47999999999999965 23355678899999999999999987411 11100 0 00000000000000
Q ss_pred ----hcCCCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCc-hHHHHhh
Q 042863 81 ----ITGQNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRS-NKVASVM 151 (680)
Q Consensus 81 ----l~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~-~~~~~~~ 151 (680)
+..........+++...+... ..+++-++|+|+++......+..+...+...+..+.+|++|.+ ..+....
T Consensus 86 ~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 000000011223222222111 2345669999999888777777777777765556655555543 3333222
Q ss_pred ccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 152 GTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 152 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
. .++..+++.+++.++..+.+...+...+.... ++.+..|++.++|.+.-+..+
T Consensus 166 ~--SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 166 L--SRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred H--hhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 33478999999999999999887755543333 256789999999987644333
No 91
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=4.5e-07 Score=91.51 Aligned_cols=179 Identities=16% Similarity=0.223 Sum_probs=113.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchh---hhhcCCcE-EEEEeCC-cCCHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQR---VEEHFELK-IWICISE-DFGERQIMT 75 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~---~~~~~~~~-~~~~~~~-~~~~~~~~~ 75 (680)
++|.+...+.+.+.+.. +.-+....++|+.|+|||++|+.+++... ....++.+ .|....+ ....++ .+
T Consensus 6 i~g~~~~~~~l~~~~~~-----~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir 79 (313)
T PRK05564 6 IIGHENIKNRIKNSIIK-----NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IR 79 (313)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HH
Confidence 47889999999999855 23456778999999999999999987321 11122222 2322111 111111 22
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHH-HhhccC
Q 042863 76 KIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVA-SVMGTR 154 (680)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~-~~~~~~ 154 (680)
++...+... ...+++=++|+|+++..+...++.+...+..-+.++.+|++|.++... ... .
T Consensus 80 ~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI--~ 141 (313)
T PRK05564 80 NIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI--K 141 (313)
T ss_pred HHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH--H
Confidence 222222110 112455678888887788888888988888877788888888665311 111 2
Q ss_pred CCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 155 GGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 155 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
.++..+.++++++++....+.+.... .+ .+.+..++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 34578999999999999888775421 11 244678899999998755433
No 92
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2.5e-09 Score=99.54 Aligned_cols=174 Identities=17% Similarity=0.130 Sum_probs=78.1
Q ss_pred HhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceecccccc---CCCccChhhc
Q 042863 375 FLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNY---KIKKLPNAIC 451 (680)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~ 451 (680)
.+.-+++|+.+.++.+. ...+.+....-|.|..+...+..++..|..+ .... .-|...-. ..+..-..+.
T Consensus 209 ~l~~f~~l~~~~~s~~~----~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~--~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALS----TENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETI--LADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred chHHhhhhheeeeeccc----hhheeceeecCchhheeeeeccccccccccc-chhh--hcCccCCCCCccCCceEEecc
Confidence 34556777888887763 3333334455667777777766554322110 0000 11111100 0011111122
Q ss_pred CCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceee
Q 042863 452 ELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLL 531 (680)
Q Consensus 452 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 531 (680)
.++.|++|+|++| .+..+.....-.++++.|++++|.+..+.. +..+++|+.|++++|. ++.+......+.|++.|.
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 2344555555554 233444444445555555555555554422 4455555555555543 222222223344555555
Q ss_pred cccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 532 IAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 532 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
+++|.+- .+ ..++++-+|..|++++|.
T Consensus 359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhhhhHh-hh-hhhHhhhhheeccccccc
Confidence 5554321 11 123444455555555543
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=9e-07 Score=94.96 Aligned_cols=194 Identities=13% Similarity=0.163 Sum_probs=116.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+..++.. +.-+..+.++|+.|+||||+|+.+++...-....+ + ...+.....+.+...
T Consensus 15 ivGq~~i~~~L~~~i~~-----~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 15 VVGQEHVTEPLSSALDA-----GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPN 82 (584)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhcc
Confidence 58999999999999965 22344568999999999999999987421000000 0 000111111111100
Q ss_pred h-------cCCCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHH
Q 042863 81 I-------TGQNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVA 148 (680)
Q Consensus 81 l-------~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~ 148 (680)
- ..+......++++.+..... ..+++-++|+|+++.......+.+...+...+..+.+|++|.+. .+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0 00000111223222211111 13455689999999888888888888888777677666655443 333
Q ss_pred HhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHHH
Q 042863 149 SVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTLG 211 (680)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~ 211 (680)
..+. .+...+++.+++.++..+++.+.+...+...+ ++.+..|++.++|.+. ++..+-
T Consensus 163 ~TI~--SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 163 PTIR--SRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred HHHH--HhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3222 23577999999999999999888766544333 3566889999999886 444443
No 94
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=9.2e-07 Score=93.39 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=117.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+...+.. +.-+....++|+.|+||||+|+.+++.. ....... ............+...
T Consensus 16 iiGqe~v~~~L~~~I~~-----grl~hayLf~Gp~G~GKTt~Ar~LAk~L-~c~~~~~------~~pC~~C~~C~~~~~~ 83 (535)
T PRK08451 16 LIGQESVSKTLSLALDN-----NRLAHAYLFSGLRGSGKTSSARIFARAL-VCEQGPS------STPCDTCIQCQSALEN 83 (535)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCcHHHHHHHHHHHh-cCCCCCC------CCCCcccHHHHHHhhc
Confidence 47889899999998865 2334566899999999999999988742 1111000 0000000111111111
Q ss_pred hcC-----CCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHh
Q 042863 81 ITG-----QNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASV 150 (680)
Q Consensus 81 l~~-----~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~ 150 (680)
... ........+++...+... ..+++-++|+|+++.......+.+...+...+..+++|++|.++. +...
T Consensus 84 ~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~t 163 (535)
T PRK08451 84 RHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPAT 163 (535)
T ss_pred CCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchH
Confidence 000 000011233333333221 124556899999998888777888777777666777777776542 2221
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
. ..+...+++.+++.++..+.+...+...+...+ ++.+..|++.++|.+.-+....
T Consensus 164 I--~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 164 I--LSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred H--HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 2 234578999999999999999988766544433 3677899999999997554443
No 95
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=7.1e-07 Score=96.33 Aligned_cols=197 Identities=14% Similarity=0.162 Sum_probs=120.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCC--cEEEEEeCCcCCHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFE--LKIWICISEDFGERQIMTKII 78 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (680)
++|++..++.+...+.. +.-+..+.++|+.|+||||+|+.+++...-..... +..+- ........+.+.
T Consensus 26 liGq~~~v~~L~~~~~~-----gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~ 96 (598)
T PRK09111 26 LIGQEAMVRTLTNAFET-----GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIM 96 (598)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHh
Confidence 47999999999999865 23355789999999999999999988421111000 00000 011112222222
Q ss_pred HHhcCCC-----CCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEec-CchHHH
Q 042863 79 KSITGQN-----QGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTT-RSNKVA 148 (680)
Q Consensus 79 ~~l~~~~-----~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTs-R~~~~~ 148 (680)
...+.+. .....++++.+.+... ..+++-++|+|+++.......+.+...+..-+..+.+|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 2221110 1122344433332221 12345588999998887777777887777766677666555 333333
Q ss_pred HhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 149 SVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
..+. .+...+++++++.++....+.+.+........+ +.+..|++.++|.+.-+....
T Consensus 177 ~tI~--SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~---eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVL--SRCQRFDLRRIEADVLAAHLSRIAAKEGVEVED---EALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHH--hheeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 2222 345779999999999999999988665544443 667899999999987554433
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=8.8e-07 Score=94.62 Aligned_cols=197 Identities=14% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+.+.+.. +.-...+.++|+.|+||||+|+.+++...-...... ..+......+.+...
T Consensus 18 IiGQe~v~~~L~~ai~~-----~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 18 VAGQETVKAILSRAAQE-----NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred hcCCHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcC
Confidence 47888888888888854 223567888999999999999999874211110000 011111122222111
Q ss_pred hcCCC-----CCCcCHHHHHH---HHHH-HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHh
Q 042863 81 ITGQN-----QGDLDIEQLQR---ILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASV 150 (680)
Q Consensus 81 l~~~~-----~~~~~~~~~~~---~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~ 150 (680)
.+.+. .....++++.. .+.. ...+++-+||+|+++.......+.+...+........+|++|.+. .+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 11100 00111222221 1111 123456699999998888777788888777654555566655543 33322
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh-hHHHHHHhhh
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP-LAVRTLGSLL 214 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~~~~~l 214 (680)
+. .+...++++++++++....+...+.......+ .+.+..|++.++|.+ .++..+-..+
T Consensus 166 I~--SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IV--SRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HH--hhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 33467899999999999999887755543333 366789999999976 4666665443
No 97
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.8e-06 Score=91.38 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=112.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhh--h-----------------hcCCcEEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRV--E-----------------EHFELKIW 61 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~--~-----------------~~~~~~~~ 61 (680)
++|.+...+.+...+.. +.-.....++|+.|+||||+|+.++....- . ..+..+++
T Consensus 18 iiGq~~i~~~L~~~i~~-----~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 18 VIGQEIVVRILKNAVKL-----QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred ccChHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 47889999999998865 223445678999999999999999873210 0 01112222
Q ss_pred EEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH-HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE
Q 042863 62 ICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV 140 (680)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii 140 (680)
++.+....... ...+...+.. ...+++-++|+|+++.......+.+...+...+..+.+|+
T Consensus 93 idaas~~gvd~------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 93 IDAASNRGIDD------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred EeCccCCCHHH------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 22211111110 1111111111 1234567999999987776666777777776555555555
Q ss_pred ecCc-hHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 141 TTRS-NKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 141 TsR~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+|.+ ..+..... .+...+.+.+++.++....+...+...+...+ ++.+..|++.++|.+..+....
T Consensus 155 ~tt~~~kl~~tI~--SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 155 CTTEYDKIPPTIL--SRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EECCHHHHHHHHH--HhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 5533 33332222 23367899999999999999988765544333 3667889999999887555444
No 98
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.7e-06 Score=93.55 Aligned_cols=197 Identities=13% Similarity=0.214 Sum_probs=116.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE-eCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC-ISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (680)
++|.+..++.+.+.+.. +.-...+.++|+.|+||||+|+.+++...-....+...|.. ...........+.+..
T Consensus 18 ivGQe~i~~~L~~~i~~-----~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 18 ITAQEHITHTIQNSLRM-----DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 58999999999988854 23345588999999999999999987422111111011111 0011112222222222
Q ss_pred HhcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCc-hHHHH
Q 042863 80 SITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRS-NKVAS 149 (680)
Q Consensus 80 ~l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~-~~~~~ 149 (680)
.-..+ .......+++...+... ..+.+-++|+|+++.......+.+..++..-+..+.+|++|.+ ..+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 11111 01112244444433332 2344557899999887777777888887776656655555433 33332
Q ss_pred hhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 150 VMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
.+. .+...+++.+++.++....+.+.+...+...++ +.+..|++.++|...-+
T Consensus 173 TI~--SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~---eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 173 TIA--SRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDA---DALQLIARKAQGSMRDA 225 (620)
T ss_pred HHH--hhceEEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHHHH
Confidence 222 234779999999999999898877554433332 66789999999977633
No 99
>PF13173 AAA_14: AAA domain
Probab=98.65 E-value=1.2e-07 Score=81.80 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=75.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
++++|.|+.|+||||+++++++... .-..++|+++...........+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccCC
Confidence 5899999999999999999997322 2345778877653321110000 2223333333467
Q ss_pred EEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHh---hccCCCCCceeCCCCChhh
Q 042863 107 YLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASV---MGTRGGTTGYNLQGLPLED 169 (680)
Q Consensus 107 ~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~---~~~~~~~~~~~l~~l~~~~ 169 (680)
.+|++|+++.. ..|......+.+.....+|++|+........ ....++...+.|.||+-.|
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 89999999654 3455544444444456789999987765422 1112334567899998766
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=1.1e-06 Score=98.00 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=116.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+..++.|...+.. +.-...+.++|+.|+||||+|+.+++...-..... ...+......+.+...
T Consensus 17 iiGqe~v~~~L~~~i~~-----~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g 84 (824)
T PRK07764 17 VIGQEHVTEPLSTALDS-----GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPG 84 (824)
T ss_pred hcCcHHHHHHHHHHHHh-----CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcC
Confidence 57999999999999865 22344578999999999999999987421111100 0001111111111111
Q ss_pred h-------cCCCCCCcCHHHHHHHHHH----HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHH
Q 042863 81 I-------TGQNQGDLDIEQLQRILRV----CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVA 148 (680)
Q Consensus 81 l-------~~~~~~~~~~~~~~~~~~~----~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~ 148 (680)
- .........++++.....+ ...++.-++|||+++.......+.+..++......+.+|++|.+. .+.
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0 0000011123333332211 123455688999999988888888888888877777777666443 333
Q ss_pred HhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 149 SVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
..+. .+...+.+..++.++..+++.+.+...+....+ +.+..|++.++|.+..+
T Consensus 165 ~TIr--SRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~---eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIR--SRTHHYPFRLVPPEVMRGYLERICAQEGVPVEP---GVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHH--hheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHH
Confidence 2222 345779999999999999998877555443332 55678999999988543
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.7e-06 Score=89.76 Aligned_cols=182 Identities=14% Similarity=0.202 Sum_probs=108.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh------hcCCc-EEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE------EHFEL-KIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~ 73 (680)
++|.+...+.+.+.+.. +.-++.+.++|++|+|||++|+.+++...-. ..|+. ++.++....... ..
T Consensus 19 iig~~~~~~~l~~~i~~-----~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 92 (367)
T PRK14970 19 VVGQSHITNTLLNAIEN-----NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DD 92 (367)
T ss_pred cCCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HH
Confidence 47899999999999865 2345688899999999999999997731110 11111 111111111111 11
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCc-hHHHHhhc
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRS-NKVASVMG 152 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~-~~~~~~~~ 152 (680)
.+.++..+.. ....+++-++|+|+++......++.+...+...+..+.+|+++.. ..+.....
T Consensus 93 i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 93 IRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1222221100 011234458999999766665666676666554445555555533 22222221
Q ss_pred cCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHH
Q 042863 153 TRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRT 209 (680)
Q Consensus 153 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 209 (680)
.+...++.+++++++....+...+...+...++ +.+..+++.++|.+..+..
T Consensus 157 --sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~---~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 157 --SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFED---DALHIIAQKADGALRDALS 208 (367)
T ss_pred --hcceeEecCCccHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHHHH
Confidence 223578999999999999999887665443333 6778999999998764433
No 102
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=2.1e-06 Score=90.33 Aligned_cols=177 Identities=18% Similarity=0.186 Sum_probs=110.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc--------------------CCcEE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH--------------------FELKI 60 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--------------------~~~~~ 60 (680)
++|.+..++.+...+.. +.-+..+.++|++|+|||++|+.+++...-... .....
T Consensus 19 iiGq~~~v~~L~~~i~~-----~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 19 ILGQDAVVAVLKNALRF-----NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 47999999999999865 223466888999999999999999874211100 00111
Q ss_pred EEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCC
Q 042863 61 WICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGS 136 (680)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~ 136 (680)
+++... ....+++....... ..+.+-++|+|+++.......+.+..++...+..+
T Consensus 94 ~i~g~~---------------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 94 EIDGAS---------------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred Eeeccc---------------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 221111 11122222111111 12456688999997776666677777777765566
Q ss_pred EEEEecCch-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 137 KILVTTRSN-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 137 ~iiiTsR~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
.+|++|.+. .+...+. .+...++++++++++....+.+.+...+...+ ++.+..|++.++|.+.-+.
T Consensus 153 ~~Il~t~~~~kl~~tI~--sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 153 KFFLATTEIHKIPGTIL--SRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAE 220 (451)
T ss_pred eEEEEeCChHhcchHHH--HhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 666665433 2222211 23467999999999999999887755443333 3667899999999876433
No 103
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.7e-06 Score=94.20 Aligned_cols=196 Identities=14% Similarity=0.212 Sum_probs=119.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+..++... .-...+.++|+.|+||||+|+.+++... ....... ...........+.+...
T Consensus 18 liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 18 LVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred ccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC----CCCCCcccHHHHHHhcC
Confidence 478899999999988652 2345788999999999999999988421 1111000 00111222333333333
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~ 150 (680)
.+.+ ......++++.+.+.... .+++-++|+|+++.......+.+...+..-...+.+|++|.+.. +...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 2221 111223444444333221 24456899999988777777778777777655666665554442 2222
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+ ..+...+++++++.++....+.+.+...+....+ +.+..|++.++|.+..+..+.
T Consensus 168 I--rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~---~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 168 I--ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEP---EALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred H--HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 2 2344678899999999999888877655443333 567899999999887554443
No 104
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=2.8e-08 Score=89.08 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=48.8
Q ss_pred hhhcCCccEEEEecCCcccchHHHHHhhc-cCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhh-cCC
Q 042863 376 LSDLGRVRTIFFSINDEKVSQSFVRSCIS-KSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAI-CEL 453 (680)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l 453 (680)
+.++..++.|++.+|.... ++. ++ .+.+|+.|+|++|.++.+. .+..+++|++|++++|. +..++..+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~----Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST----IEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNL 87 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccc----ccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhC
Confidence 3455678889998875322 222 33 5788999999999999774 57788999999999985 44554444 468
Q ss_pred CCCcEEecCCcccccc-CcccccccCcccEEEeccccccccc----cccCcccccceeeccc
Q 042863 454 QSLQTLNLEECLELEE-LPKDIRYLVSLRVFEVTTKQKSLQD----SGIGCLVSLRCLIISH 510 (680)
Q Consensus 454 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~l~~L~~L~l~~ 510 (680)
|+|++|++++|.+..- --..+..+++|+.|++.+|++...+ ..+..+|+|+.|+-..
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999998865431 1245678899999999999887542 2234566666666543
No 105
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=3.1e-06 Score=92.47 Aligned_cols=196 Identities=14% Similarity=0.193 Sum_probs=117.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+..++.+...+.. +.-...+.++|+.|+||||+|+.+++...-..... .....+.....+.+...
T Consensus 18 iiGq~~~~~~L~~~i~~-----~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAE-----GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred hcCCHHHHHHHHHHHHh-----CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcC
Confidence 57999999999888865 12345678999999999999999987321000000 00011112333333322
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~ 150 (680)
.+.+ .......+++...+... ....+-++|+|+++.......+.+..++......+.+|+++.+. .+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 2211 00122333333222211 12446689999998777777777777777665566666655443 23222
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
.. .+...+.+++++..+....+.+.+...+...++ +.+..|++.++|.+..+.....
T Consensus 167 I~--SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~---eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 167 IL--SRCQRFDFHRHSVADMAAHLRKIAAAEGINLEP---GALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HH--hccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 21 234678899999999999998887665443333 6678999999999975554443
No 106
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.58 E-value=1.2e-06 Score=82.79 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=96.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcC--CcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHF--ELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
...++|||+.|.|||.|.+++++ ...+.+ ..++|++.. +....+...+.. ...+ .+...++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~-----~~~~----~~~~~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSAE------EFIREFADALRD-----GEIE----EFKDRLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEHH------HHHHHHHHHHHT-----TSHH----HHHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecHH------HHHHHHHHHHHc-----ccch----hhhhhhh
Confidence 44589999999999999999998 443332 347777653 344444444322 1122 2222233
Q ss_pred CceEEEEEecCCCCChhH--HHHHHHhcCCC-CCCCEEEEecCchHHH------HhhccCCCCCceeCCCCChhhHHHHH
Q 042863 104 GKRYLLVMDDVWNEDPKV--WDKLKSLLSGG-AKGSKILVTTRSNKVA------SVMGTRGGTTGYNLQGLPLEDCLSLF 174 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~~~--~~~l~~~l~~~-~~~~~iiiTsR~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~l~ 174 (680)
.--+|++||++...... .+.+...+... ..|-++|+|++..... ........--.++|++.++++..+++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 33588999996632221 23344444432 2355799998654210 01011112246899999999999999
Q ss_pred HHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 175 MKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
++.+.......+ +++++-|++++.+....+..+...+
T Consensus 176 ~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 176 QKKAKERGIELP---EEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 998876655443 3777899999888887776665444
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=98.58 E-value=1.8e-06 Score=82.86 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=96.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++|+|++|+|||.|++.+++ ........++|++... +... .. .+.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 46789999999999999999987 3333334577887542 1110 01 122222222
Q ss_pred eEEEEEecCCCCC-hhHH-HHHHHhcCC-CCCCCEEEEecCchHHHHhh------ccCCCCCceeCCCCChhhHHHHHHH
Q 042863 106 RYLLVMDDVWNED-PKVW-DKLKSLLSG-GAKGSKILVTTRSNKVASVM------GTRGGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 106 ~~llvlD~~~~~~-~~~~-~~l~~~l~~-~~~~~~iiiTsR~~~~~~~~------~~~~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
-++|+||++... ...| ..+...+.. ...+..+|+|++.+...-.. +....-..+.++++++++..++++.
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 368899996421 1222 335555543 22355688888754311110 0001114578999999999999996
Q ss_pred HhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 177 CAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
.+.......+ +++...|++++.|....+..+...+
T Consensus 178 ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6644333332 3777899999999888776665544
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.57 E-value=6.7e-07 Score=92.29 Aligned_cols=186 Identities=20% Similarity=0.217 Sum_probs=100.8
Q ss_pred CCCchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG-------ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
+.|++++++++.+.+..+... +-..++.+.++|++|+|||++|+.++. .....| +.+.. ..+
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~~l 192 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----SEL 192 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----HHH
Confidence 468999999999887542211 113356799999999999999999988 333332 22211 111
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhHHHHHHHh---cCCC--CCCCE
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKVWDKLKSL---LSGG--AKGSK 137 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~~~~l~~~---l~~~--~~~~~ 137 (680)
....... ....+...+...-...+.+|++|+++.. +......+..+ +... ..+..
T Consensus 193 ~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 193 VRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred HHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 1111100 0111112222222345689999998542 11111222222 2221 23667
Q ss_pred EEEecCchHHHHhhccC-CC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh-hHHHHH
Q 042863 138 ILVTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP-LAVRTL 210 (680)
Q Consensus 138 iiiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~~ 210 (680)
||.||.........-.. .+ ...+.++..+.++..++|+...........-. ...+++.+.|.. ..+..+
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~sg~dl~~l 335 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGASGADLKAI 335 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCCHHHHHHH
Confidence 88888765322111111 11 24688999999999999998775443222111 356777776653 344433
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=3.8e-06 Score=91.46 Aligned_cols=176 Identities=13% Similarity=0.211 Sum_probs=114.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh---------------------hcCCcE
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE---------------------EHFELK 59 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~ 59 (680)
++|.+...+.+...+.. +.-+..+.++|+.|+||||+|+.++....-. .+|+ +
T Consensus 19 viGq~~~~~~L~~~i~~-----~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~ 92 (614)
T PRK14971 19 VVGQEALTTTLKNAIAT-----NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-I 92 (614)
T ss_pred hcCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-e
Confidence 47999999999999865 2334568899999999999999988732100 0111 2
Q ss_pred EEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCC
Q 042863 60 IWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKG 135 (680)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~ 135 (680)
..++... ....+++...+.+. ..+.+=++|+|+++.......+.+..++..-+..
T Consensus 93 ~~ld~~~---------------------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 93 HELDAAS---------------------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred EEecccc---------------------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 2222211 11233333333221 1234458899999888877888888888876666
Q ss_pred CEEEEec-CchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 136 SKILVTT-RSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 136 ~~iiiTs-R~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
+.+|++| +...+...+. .+...++++++++++....+...+...+....+ +.+..|++.++|...-+.
T Consensus 152 tifIL~tt~~~kIl~tI~--SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~---~al~~La~~s~gdlr~al 220 (614)
T PRK14971 152 AIFILATTEKHKILPTIL--SRCQIFDFNRIQVADIVNHLQYVASKEGITAEP---EALNVIAQKADGGMRDAL 220 (614)
T ss_pred eEEEEEeCCchhchHHHH--hhhheeecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 6666544 4444333322 234779999999999999999887665544433 567899999999876443
No 110
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=9.9e-08 Score=100.39 Aligned_cols=175 Identities=29% Similarity=0.340 Sum_probs=104.9
Q ss_pred cCcceeEEEeCCCCcccccccccCcC-CcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEE
Q 042863 405 KSQFLRVLNLSGSAIEALPKEIGNLK-HMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVF 483 (680)
Q Consensus 405 ~~~~L~~L~L~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 483 (680)
....++.|++.++.++.++....... +|+.|++++| ....+|..+..++.|+.|+++.|. +..+|...+.+++|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhe
Confidence 34667777777777777766666663 7777777766 344554446667777777777663 44566555566677777
Q ss_pred EeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCcc
Q 042863 484 EVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLS 563 (680)
Q Consensus 484 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 563 (680)
++++|.+..++.....+..|+.|.+++|.. ..++..+..+.++..+.+.+|.. ..++..++.+++++.|++++|....
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCcee-eeccchhccccccceeccccccccc
Confidence 777777776665544555577777766542 22344455566666666555543 2334555666667777666664222
Q ss_pred ccccccccCCCCcCcccCCCCcccceecccccC
Q 042863 564 LNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTP 596 (680)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 596 (680)
+.. .....+|+.|+++++..
T Consensus 270 ------------i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 270 ------------ISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ------------ccc-ccccCccCEEeccCccc
Confidence 111 34455666666666543
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.56 E-value=5.4e-07 Score=85.04 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=117.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCC-cEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFE-LKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++|.+..++.+.+.+.+ ...++...|||+|.|||+.|+.++++..-.+-|+ .++-.+.+...... +.+.=
T Consensus 38 ~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K-- 108 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK-- 108 (346)
T ss_pred hcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh--
Confidence 36788888888888865 3457889999999999999999987422223332 23333333322221 00000
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHh--CCce-EEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCC
Q 042863 80 SITGQNQGDLDIEQLQRILRVCL--NGKR-YLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRG 155 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l--~~~~-~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~ 155 (680)
..+.+.+........ .-.+ -+||||+.+....+.|..+...+.++...+++++.+..- .+..... .
T Consensus 109 --------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~--S 178 (346)
T KOG0989|consen 109 --------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV--S 178 (346)
T ss_pred --------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH--h
Confidence 001111111000000 0112 489999999999999999999999988777776555433 2211111 2
Q ss_pred CCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHH
Q 042863 156 GTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRT 209 (680)
Q Consensus 156 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 209 (680)
+...+.-++|.+++...-++..+.+++...++ ++...|++.++|--.-...
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDLRRAIT 229 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 33568899999999999999999777666554 6678999999997653333
No 112
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.3e-06 Score=89.24 Aligned_cols=193 Identities=15% Similarity=0.142 Sum_probs=115.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+...+.. +.-+..+.++|+.|+||||+|+.+++...-...... .........+.+...
T Consensus 18 iiGqe~iv~~L~~~i~~-----~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 18 LEGQDFVVETLKHSIES-----NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDND 85 (563)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcC
Confidence 47999999999999965 233556889999999999999999884211110000 000011111111111
Q ss_pred hcCC-----CCCCcCHHHHHHHHHH----HhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRV----CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~----~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~ 150 (680)
-..+ .......+++.+.... ...+++-++|+|+++......++.+...+..-+..+.+|++|.+. .+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 0011223333322211 123455689999998887777777777777655666666665443 33322
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
+. .+...++..+++.++..+.+.+.+...+...+ ++.+..|++.++|.+..+...
T Consensus 166 I~--SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 166 IK--SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HH--HhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 23467899999999999999888755544433 366788999999988644433
No 113
>PRK09087 hypothetical protein; Validated
Probab=98.53 E-value=1.3e-06 Score=83.04 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=90.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
.+.++|+|++|+|||+|++.++.. . ...|++.. .....++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~-----~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S-----DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c-----CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 467999999999999999988762 2 12244432 1111111111 11
Q ss_pred eEEEEEecCCCCChhHHHHHHHhcCC-CCCCCEEEEecCchHH--HH----hhccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 106 RYLLVMDDVWNEDPKVWDKLKSLLSG-GAKGSKILVTTRSNKV--AS----VMGTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 106 ~~llvlD~~~~~~~~~~~~l~~~l~~-~~~~~~iiiTsR~~~~--~~----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
-+|++||++.... .-..+...+.. ...|..+|+|++.+.- .. ..+.......++++++++++..+++++.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2788899965321 11334444432 2235568888874321 11 11111233678999999999999999988
Q ss_pred cccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 179 FKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
.......+ +++...|++++.|....+..+...+
T Consensus 167 ~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQLYVD---PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 66544333 3677899999999888776654444
No 114
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.53 E-value=2.4e-06 Score=86.74 Aligned_cols=146 Identities=13% Similarity=0.188 Sum_probs=87.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+++..+.+.+++.. +..+..+.++|++|+|||++|+.+++. ... .+.+++... .. ....+..+..
T Consensus 23 ~~~~~~~~~~l~~~~~~-----~~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~-~~~i~~~l~~ 90 (316)
T PHA02544 23 CILPAADKETFKSIVKK-----GRIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CR-IDFVRNRLTR 90 (316)
T ss_pred hcCcHHHHHHHHHHHhc-----CCCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-cc-HHHHHHHHHH
Confidence 47889999999988864 234567777999999999999999873 221 234555544 11 1111111111
Q ss_pred hcCCCCCCcCHHHHHHHHHHH-hCCceEEEEEecCCCC-ChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccCCCC
Q 042863 81 ITGQNQGDLDIEQLQRILRVC-LNGKRYLLVMDDVWNE-DPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTRGGT 157 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlD~~~~~-~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~~~~ 157 (680)
. .... ..+.+-++|+|+++.. .......+..++.....++++|+|+.... +..... .+.
T Consensus 91 ~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~--sR~ 152 (316)
T PHA02544 91 F----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR--SRC 152 (316)
T ss_pred H----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH--hhc
Confidence 1 0000 1134568899999765 33334456666666666778888886543 212111 233
Q ss_pred CceeCCCCChhhHHHHHHH
Q 042863 158 TGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 158 ~~~~l~~l~~~~~~~l~~~ 176 (680)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 5677878888887766554
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.53 E-value=8.5e-07 Score=91.82 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=100.8
Q ss_pred CCCchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
+.|++++++++.+.+..+.. -+-..++.|.++|++|+|||++|+.+++ +.... |+.+.. ..+
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~----~~l 201 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG----SEL 201 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----HHH
Confidence 36899999999987743210 1124467899999999999999999987 33322 222211 111
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhHHHHHHHhc---CCC--CCCCE
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKVWDKLKSLL---SGG--AKGSK 137 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~~~~l~~~l---~~~--~~~~~ 137 (680)
. ..... .....+...+...-...+.+|++|+++.. +......+..++ ... ..+..
T Consensus 202 ~----~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 202 V----QKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred h----Hhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 1 11100 01111112222222345789999999542 111122233333 221 23566
Q ss_pred EEEecCchHHHHhhccC-CC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHH
Q 042863 138 ILVTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLG 211 (680)
Q Consensus 138 iiiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~ 211 (680)
||.||.........-.. ++ ...+.+++.+.++..++|+...........-. ...+++.+.| .+.-+..++
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~sgadl~~l~ 345 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGASGADLKAIC 345 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCCHHHHHHHH
Confidence 77777765322221111 11 24689999999999999998875443322222 3566666665 344444443
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.52 E-value=6e-06 Score=76.89 Aligned_cols=120 Identities=24% Similarity=0.381 Sum_probs=74.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|-+.+.+.+.+...... .+.....+.++|+.|.|||++++++.+ .+...--.++-+.-..
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~--~y~~~GLRlIev~k~~-------------- 90 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLN--EYADQGLRLIEVSKED-------------- 90 (249)
T ss_pred hcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHH--HHhhcCceEEEECHHH--------------
Confidence 3688888888888777655 234567889999999999999999988 4444322222222111
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecC-CCCChhHHHHHHHhcCCC----CCCCEEEEecCchHH
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDV-WNEDPKVWDKLKSLLSGG----AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~-~~~~~~~~~~l~~~l~~~----~~~~~iiiTsR~~~~ 147 (680)
-.+...+.+.++. +..+++|++||+ .+.+...+..+...+... +.+..|..||..+++
T Consensus 91 -------L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 91 -------LGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -------hccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 1222333333332 357899999998 334455667777776642 344545556655543
No 117
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=6.6e-06 Score=88.93 Aligned_cols=191 Identities=14% Similarity=0.154 Sum_probs=113.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|++...+.+...+.. +.-.....++|+.|+|||++|+.+++... ...-. .....+.....+.+...
T Consensus 18 viGq~~v~~~L~~~i~~-----~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~------~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 18 VVGQEHITKTLKNAIKQ-----GKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPP------DGEPCNECEICKAITNG 85 (559)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCC------CCCCCCccHHHHHHhcC
Confidence 58999999999999965 22345677899999999999999987421 11100 00011111122222111
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~ 150 (680)
.+.+ .......+++...+... ..++.-++|+|+++......+..+...+..-+..+.+|++|..+ .+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 1110 00011223222222221 23456688999998877777777777776655566566555433 22222
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
+ ..+...++..+++.++....+...+...+...+ ++.+..|++.++|.+..+.
T Consensus 166 I--~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 I--LSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred H--HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2 123467889999999999999888765544333 2667889999999887443
No 118
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.4e-09 Score=98.00 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=55.4
Q ss_pred CccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcc-cccccccCcCCcceeccccccCCCccC--hhhcCCCCCc
Q 042863 381 RVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIE-ALPKEIGNLKHMRYLDLSRNYKIKKLP--NAICELQSLQ 457 (680)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 457 (680)
.|+.+++++.. .....+...++.|.+|+.|+|.++.+. .+-..+.+-.+|..|+++.|...+... -.+.+|..|.
T Consensus 186 Rlq~lDLS~s~--it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSV--ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhh--eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 47777777643 344555566777888888888887776 444456666777777777775443321 2245677777
Q ss_pred EEecCCccccc
Q 042863 458 TLNLEECLELE 468 (680)
Q Consensus 458 ~L~l~~~~~~~ 468 (680)
.|+|++|....
T Consensus 264 ~LNlsWc~l~~ 274 (419)
T KOG2120|consen 264 ELNLSWCFLFT 274 (419)
T ss_pred hcCchHhhccc
Confidence 77777775443
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.9e-09 Score=97.64 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=116.1
Q ss_pred ceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCC-cc--cccccccCcCCc
Q 042863 356 RVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSA-IE--ALPKEIGNLKHM 432 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~--~~~~~~~~l~~L 432 (680)
.++++.+....+....+..++..|+.|+.|.+.++. .++.+-.++..-.+|+.|+|+.|+ ++ .+.-.+.+|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~---LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR---LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc---cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 477788888888888888999999999999999876 444555578899999999999975 55 333457899999
Q ss_pred ceeccccccCCCcc-Chhhc-CCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeeccc
Q 042863 433 RYLDLSRNYKIKKL-PNAIC-ELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISH 510 (680)
Q Consensus 433 ~~L~l~~~~~~~~~-~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (680)
..|+++||...... ...+. --++|..|+|+++...- . .+++... ...+++|.+|+++.
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--~---------------~sh~~tL---~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--Q---------------KSHLSTL---VRRCPNLVHLDLSD 322 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--h---------------hhHHHHH---HHhCCceeeecccc
Confidence 99999999655433 11122 23578888888763210 0 0111111 13455666666666
Q ss_pred ccCccc-chhhccCCcccceeecccccCcc-cCCccCCCCCCcCeEeecCCC
Q 042863 511 CRNLEY-LFDDIDQLRVLRSLLIAGCPCLI-SLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 511 ~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 560 (680)
|..++. ...++-.++.|++|.++.|.... +..-.+...|+|.+|++.+|-
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 554442 23344456666666666665321 111224556667777666653
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.51 E-value=3.6e-06 Score=81.98 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=108.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|.+|+.++..+...+... +..-+..|.|+|.+|.|||.+.+++.+.. .. ..+|+++.+.++...++..++.+
T Consensus 8 v~~Re~qi~~L~~Llg~~---~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNN---SCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccchHHHHHHHHHHhCCC---CcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHH
Confidence 568999999999998652 22345667999999999999999999843 22 26799999999999999999999
Q ss_pred hcCCCCCC----cCHHHHH---HHHHHH--h--CCceEEEEEecCCC---CChhHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 81 ITGQNQGD----LDIEQLQ---RILRVC--L--NGKRYLLVMDDVWN---EDPKVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 81 l~~~~~~~----~~~~~~~---~~~~~~--l--~~~~~llvlD~~~~---~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
.+..+.+. .+.+.+. ..+.++ . +++.++||+||++. .+...+..+.....-.+....+|+++....
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 96222211 1122222 222221 1 35689999999844 333333343333222233344555555443
Q ss_pred HHHhhccC--CCCCceeCCCCChhhHHHHHHHHh
Q 042863 147 VASVMGTR--GGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 147 ~~~~~~~~--~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
........ .....+..+..+.+|...++.+..
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22222211 122456789999999999987643
No 121
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=6.8e-08 Score=101.61 Aligned_cols=177 Identities=26% Similarity=0.360 Sum_probs=137.2
Q ss_pred hhhcCCccEEEEecCCcccchHHHHHhhccC-cceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCC
Q 042863 376 LSDLGRVRTIFFSINDEKVSQSFVRSCISKS-QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQ 454 (680)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 454 (680)
....+.+..|.+.++... -++.....+ ++|+.|++++|.+..+|..+..+++|+.|++++| .+..+|...+.++
T Consensus 112 ~~~~~~l~~L~l~~n~i~----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~ 186 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLS 186 (394)
T ss_pred hhcccceeEEecCCcccc----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhh
Confidence 344577888888877532 222334445 3899999999999999888899999999999998 4667777666889
Q ss_pred CCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeeccc
Q 042863 455 SLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAG 534 (680)
Q Consensus 455 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 534 (680)
.|+.|++++| ....+|..+..+..|+.+.+++|+....+..+..+.++..+.+.+|. +..++..++.+++++.|++++
T Consensus 187 ~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 187 NLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceecccc
Confidence 9999999997 46678887777777999999999766777778888888888866654 444466778888899999999
Q ss_pred ccCcccCCccCCCCCCcCeEeecCCCC
Q 042863 535 CPCLISLPPAMRYLSSLETLMFVECES 561 (680)
Q Consensus 535 ~~~~~~~~~~~~~~~~L~~L~l~~~~~ 561 (680)
|.+. .++. ++...+|+.|+++++..
T Consensus 265 n~i~-~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 265 NQIS-SISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccc-cccc-ccccCccCEEeccCccc
Confidence 8654 4444 78889999999998754
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=3.6e-06 Score=88.51 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=103.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++|+|+.|.|||.|++.+++.......-..++|++.. .+...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~------~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD------EFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 4568999999999999999998732211222345566543 45555555543210 11222333333 2
Q ss_pred eEEEEEecCCCCC--hhHHHHHHHhcCC-CCCCCEEEEecCchH-HHHhh-----ccCCCCCceeCCCCChhhHHHHHHH
Q 042863 106 RYLLVMDDVWNED--PKVWDKLKSLLSG-GAKGSKILVTTRSNK-VASVM-----GTRGGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 106 ~~llvlD~~~~~~--~~~~~~l~~~l~~-~~~~~~iiiTsR~~~-~~~~~-----~~~~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
.-+||+||++... ....+.+...+.. ...+..||+|+.... ..... .....--.+.+++++.++..+++++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3488899996533 2233444444443 223445888876442 11111 1111224577999999999999999
Q ss_pred HhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 177 CAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
.+...... ..-.++++..|++.++|.|..+.-+...+
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 88543221 02234778999999999999887776544
No 123
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.50 E-value=8.6e-06 Score=75.40 Aligned_cols=185 Identities=16% Similarity=0.201 Sum_probs=114.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHH----HHHHHHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIE----QLQRILRV 100 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~ 100 (680)
+..++.|+|+-|.|||.+++....... ++. ..+-+...+......+...++.++.. ....... ++.+.+.+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~d~--~~~v~i~~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-EDQ--VAVVVIDKPTLSDATLLEAIVADLES--QPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-CCc--eEEEEecCcchhHHHHHHHHHHHhcc--CccchhHHHHHHHHHHHHH
Confidence 345899999999999999994444211 111 12223344455666778888888876 2333333 33334444
Q ss_pred Hh-CCce-EEEEEecCCCCChhHHHHHHHhcCCCC---CCCEEEEecCch----HHHHhh-ccCCCCCc-eeCCCCChhh
Q 042863 101 CL-NGKR-YLLVMDDVWNEDPKVWDKLKSLLSGGA---KGSKILVTTRSN----KVASVM-GTRGGTTG-YNLQGLPLED 169 (680)
Q Consensus 101 ~l-~~~~-~llvlD~~~~~~~~~~~~l~~~l~~~~---~~~~iiiTsR~~----~~~~~~-~~~~~~~~-~~l~~l~~~~ 169 (680)
.. ++++ .++++|+.+......++.+.-+..... ..-+|+..-..+ ...... ....+... |+++|+++++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4555 899999998877777777766655432 222344432211 000111 11122334 8999999999
Q ss_pred HHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 170 CLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
+..|++.+......+..-..++....|.+...|.|.+++.++...
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 999999888665333322344667899999999999999988544
No 124
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.50 E-value=2.8e-06 Score=92.95 Aligned_cols=201 Identities=22% Similarity=0.265 Sum_probs=98.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC---CcEEEEEeC--Cc-CCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF---ELKIWICIS--ED-FGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~~~~~--~~-~~~~~~~ 74 (680)
++|++..++.+.+.+.. ..+..+.|+|++|+||||+|+.+++.......+ ...-|+.+. .. .+...+.
T Consensus 156 iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 156 IVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred ceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 47888888888777743 234579999999999999999987643222211 122344332 21 1122211
Q ss_pred HHHHH---------------HhcCC------------------CCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhH
Q 042863 75 TKIIK---------------SITGQ------------------NQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKV 121 (680)
Q Consensus 75 ~~~~~---------------~l~~~------------------~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~ 121 (680)
..++. ..+.. +....+ ...+..+.+.++++++.++-|..|..+...
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 11111 00000 000000 112223333333333333333332222222
Q ss_pred HHHHHHhcCCCCCCCEEEE--ecCchHH-HHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHH
Q 042863 122 WDKLKSLLSGGAKGSKILV--TTRSNKV-ASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVK 198 (680)
Q Consensus 122 ~~~l~~~l~~~~~~~~iii--TsR~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 198 (680)
|..+...+....+...+++ ||++... ...+ ..+...+.+++++.+|..+++++.+.......+ +++.+.|.+
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aL--rSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ 383 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPAL--RSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIAR 383 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHH--HhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Confidence 2333222232222222343 5554421 1111 123356789999999999999998764432222 345566767
Q ss_pred hhCCChhHHHHHHhh
Q 042863 199 KCGGIPLAVRTLGSL 213 (680)
Q Consensus 199 ~~~g~Pl~l~~~~~~ 213 (680)
.+..-+.++..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 665556677666544
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=6.1e-06 Score=89.65 Aligned_cols=193 Identities=14% Similarity=0.213 Sum_probs=113.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.+...+.+...+.. +.-+..+.++|+.|+||||+|+.++....-..... ............+...
T Consensus 18 iiGq~~v~~~L~~~i~~-----~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDT-----GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred ccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 57999999999998865 22345668999999999999999987421111100 0000111111111111
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCc-hHHHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRS-NKVASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~-~~~~~~ 150 (680)
-..+ .......+++...+... ..++.-++|+|+++.......+.+...+..-+..+.+|++|.+ ..+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 00011122222211111 1234458899999888777777888777776666666655544 333332
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTL 210 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~ 210 (680)
+. .+...++..+++.++....+...+...+...++ +.+..|++.++|... ++..+
T Consensus 166 I~--SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~---~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 IL--SRCQRFDFRRIPLQKIVDRLRYIADQEGISISD---AALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HH--HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 22 234678899999999999888877655443333 667889999999775 44444
No 126
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=7.9e-08 Score=89.77 Aligned_cols=188 Identities=21% Similarity=0.207 Sum_probs=97.2
Q ss_pred cCCcceeccccccCCC--ccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccc--ccccCcccccc
Q 042863 429 LKHMRYLDLSRNYKIK--KLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ--DSGIGCLVSLR 504 (680)
Q Consensus 429 l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~ 504 (680)
+..+++|||.+|.... .+...+..+|.|++|+|+.|+....|-..--.+.+|+.|.+++..+... ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4445555555543221 2223334555555555555543322211101234555555555544322 33344556666
Q ss_pred eeecccccCcccch--h-hc-cCCcccceeecccccCcc--cCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCc
Q 042863 505 CLIISHCRNLEYLF--D-DI-DQLRVLRSLLIAGCPCLI--SLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQA 578 (680)
Q Consensus 505 ~L~l~~~~~~~~~~--~-~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 578 (680)
.|+++.|+. +.+. . .. ..-+.+..+++..|.... ......+.+|++..+.+..|+.-+ .....
T Consensus 150 elHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~----------~s~ek 218 (418)
T KOG2982|consen 150 ELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT----------ESSEK 218 (418)
T ss_pred hhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc----------hhhcc
Confidence 666665431 1100 0 00 011234444444443221 122223456788888888886322 22233
Q ss_pred ccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc
Q 042863 579 SNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE 631 (680)
Q Consensus 579 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~ 631 (680)
....+|.+..|+++.+ ++.+|.....+.+++.|..|.++++|.+..+..
T Consensus 219 ~se~~p~~~~LnL~~~----~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGAN----NIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cCCCCCcchhhhhccc----ccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 3445677777788765 467776666788999999999999998877654
No 127
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.44 E-value=7.5e-07 Score=88.13 Aligned_cols=291 Identities=18% Similarity=0.185 Sum_probs=178.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..|.+.++|++||||||++-.++. .+..| +++.++++..-.+...+..-+...++-...+..+ ....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~---~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDS---AVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchH---HHHHHHHHHh
Confidence 357899999999999999987765 44556 4566778888888888888888878765544222 2234444556
Q ss_pred CceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhccCCCCCceeCCCCChh-hHHHHHHHHhccc-
Q 042863 104 GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTRGGTTGYNLQGLPLE-DCLSLFMKCAFKE- 181 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~- 181 (680)
+++.++++||-... ......+...+....+...++.|+|+.... .+.....+++++.. ++.++|...+...
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV------AGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCCccccCCchhHHHHHHHHHhc
Confidence 78999999998211 111122333344444456688899877432 23355678888775 6888877666432
Q ss_pred -CCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHHHhhhh-----cccc-cccccchhhHhccccCCcH
Q 042863 182 -ERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYVRDNEI-----WKLE-QKANDILPVLRFSYDQLPP 254 (680)
Q Consensus 182 -~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~-~~~~~l~~~~~~s~~~L~~ 254 (680)
...........+..|.+..+|.|+++..+++..+.-.....-..+.+... .... .-.......++.||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 11122233466789999999999999999988864332221111111100 0000 0112567789999999999
Q ss_pred HHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHHHHHHHHHHhCCcccccccCccEeEEEEcHHHHHH
Q 042863 255 RLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIGMRSLKQLCSRSFFHDLVRGFEMFTFKMHDLIHDL 334 (680)
Q Consensus 255 ~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~H~li~~~ 334 (680)
..+..+..++.|...+....... .+.|- ............+..+++++++....... .-.|+.-+-.+.|
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~----~a~g~-----~~~~~~y~~~~a~~ll~~kslv~a~~~~~-~a~~Rl~eT~r~Y 309 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALA----VAAGA-----DVDVPRYLVLLALTLLVDKSLVVALDLLG-RARYRLLETGRRY 309 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHH----HhcCC-----ccccchHHHHHHHHHHhhccchhhhhhhh-HHHHHHHHHHHHH
Confidence 99999999999977776653322 22221 11124455666677788888866533211 1134444555555
Q ss_pred HHHh
Q 042863 335 AQLV 338 (680)
Q Consensus 335 ~~~~ 338 (680)
+...
T Consensus 310 alae 313 (414)
T COG3903 310 ALAE 313 (414)
T ss_pred HHHH
Confidence 5443
No 128
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1.6e-05 Score=79.35 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=116.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhh-------------hhcCCcEEEEEeCCc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRV-------------EEHFELKIWICISED 67 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-------------~~~~~~~~~~~~~~~ 67 (680)
++|.+...+.+.+.+.. +.-+....++|+.|+||+++|..+++..-- ...++...|+.-...
T Consensus 6 iiGq~~~~~~L~~~i~~-----~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQ-----NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred hCCHHHHHHHHHHHHHh-----CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 47999999999999965 233578999999999999999999874110 123445566542110
Q ss_pred CCHHHHHHHHHHHhc--CCCCCCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE
Q 042863 68 FGERQIMTKIIKSIT--GQNQGDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV 140 (680)
Q Consensus 68 ~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii 140 (680)
......-..-+...+ ........++++. .+.+.+ .+.+-++|+|+++..+......+...+-.-+ .+.+|+
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 81 HQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred ccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 000000000011111 1111223344433 333333 3455689999998888777777777776655 445555
Q ss_pred ecCch-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 141 TTRSN-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 141 TsR~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
+|.+. .+...+. .++..+.++++++++..+.+.+....... ......++..++|.|.....+
T Consensus 159 i~~~~~~Ll~TI~--SRcq~i~f~~l~~~~~~~~L~~~~~~~~~------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 159 IAPSPESLLPTIV--SRCQIIPFYRLSDEQLEQVLKRLGDEEIL------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EECChHhCcHHHH--hhceEEecCCCCHHHHHHHHHHhhccccc------hhHHHHHHHHcCCCHHHHHHH
Confidence 55443 3333332 34678999999999999999987532211 111357899999999755443
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.42 E-value=7.2e-06 Score=80.38 Aligned_cols=165 Identities=13% Similarity=0.178 Sum_probs=83.9
Q ss_pred CCCchhHHHHHHHHHhcC---------CCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHH
Q 042863 1 IIGRDKDREKIIEALMQT---------SSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGER 71 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~---------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (680)
++|.+...+++.+..... .-........+.++|++|+|||++|+.++.............++.+.. .
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~ 83 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----A 83 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----H
Confidence 366666666665432210 001123457889999999999999999987321111111111222221 1
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC--------hhHHHHHHHhcCCCCCCCEEEEecC
Q 042863 72 QIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED--------PKVWDKLKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~--------~~~~~~l~~~l~~~~~~~~iiiTsR 143 (680)
. +.....+ .........+.+ ...-+|++|+++... ....+.+...+........+++++.
T Consensus 84 ~----l~~~~~g-----~~~~~~~~~~~~---a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 84 D----LVGEYIG-----HTAQKTREVIKK---ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred H----hhhhhcc-----chHHHHHHHHHh---ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 1 1111100 011122222222 123589999996522 2233445555555444555666655
Q ss_pred chHHHHhhc----cCCCC-CceeCCCCChhhHHHHHHHHhccc
Q 042863 144 SNKVASVMG----TRGGT-TGYNLQGLPLEDCLSLFMKCAFKE 181 (680)
Q Consensus 144 ~~~~~~~~~----~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~ 181 (680)
......... ...+. ..+.+++++.+|..+++++.+...
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 432211110 01122 358899999999999999888554
No 130
>PRK06620 hypothetical protein; Validated
Probab=98.41 E-value=6.4e-06 Score=77.49 Aligned_cols=144 Identities=15% Similarity=0.015 Sum_probs=85.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
+.++++|++|+|||+|++.+++.. .. .++..... . + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~~~~~--~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIKDIFF--N---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcchhhh--c---------------------h-------hHH-hcC
Confidence 679999999999999999877632 11 22221000 0 0 011 123
Q ss_pred EEEEEecCCCCChhHHHHHHHhcCC-CCCCCEEEEecCchHH----HHhhccCCCCCceeCCCCChhhHHHHHHHHhccc
Q 042863 107 YLLVMDDVWNEDPKVWDKLKSLLSG-GAKGSKILVTTRSNKV----ASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKE 181 (680)
Q Consensus 107 ~llvlD~~~~~~~~~~~~l~~~l~~-~~~~~~iiiTsR~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 181 (680)
-++++||++.... ..+...+.. ...|..+|+|++.+.. ....+.......++++++++++...++++.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 5788999974322 223333322 1235578888875432 1111122223478999999999999998887544
Q ss_pred CCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 182 ERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
....+ +++++.|++++.|.-..+.-+-..+
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 33333 3777899999988877665554433
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.41 E-value=2.7e-06 Score=95.73 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=87.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-----C-Cc-EEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-----F-EL-KIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----~-~~-~~~~~~~~~~~~~~~ 73 (680)
++||+++++++.+.|.+. ....+.++|++|+|||++|+.+++ +.... + .. ++.++++.
T Consensus 184 ~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~~~~~~------- 248 (731)
T TIGR02639 184 LIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYSLDMGS------- 248 (731)
T ss_pred ccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEEecHHH-------
Confidence 589999999999999762 344678999999999999999998 43221 1 12 22222111
Q ss_pred HHHHHHHhcCCCCCCcCHH-HHHHHHHHHhCCceEEEEEecCCCCC---------hhHHHHHHHhcCCCCCCCEEEEecC
Q 042863 74 MTKIIKSITGQNQGDLDIE-QLQRILRVCLNGKRYLLVMDDVWNED---------PKVWDKLKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~llvlD~~~~~~---------~~~~~~l~~~l~~~~~~~~iiiTsR 143 (680)
++.. .. -..+.+ .+...+.+.-+..+.+|++|+++..- ....+.+...+.. ...++|-+|.
T Consensus 249 ---l~a~---~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt 319 (731)
T TIGR02639 249 ---LLAG---TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTT 319 (731)
T ss_pred ---Hhhh---cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecC
Confidence 1000 00 011222 22233333323467899999996421 1122334444432 2344555544
Q ss_pred chHH----HHhhccCCCCCceeCCCCChhhHHHHHHHHhc
Q 042863 144 SNKV----ASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAF 179 (680)
Q Consensus 144 ~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 179 (680)
...+ ........+...+.+++++.++..++++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 3221 10000111336799999999999999997653
No 132
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=4.7e-07 Score=99.82 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=73.0
Q ss_pred cceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccc-cccccCcccccceeeccc
Q 042863 432 MRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL-QDSGIGCLVSLRCLIISH 510 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~ 510 (680)
+..|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|+++. .|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5666777776666667667777777777777776666677777777777777777777664 355666777777777777
Q ss_pred ccCcccchhhccCC-cccceeecccccCcc
Q 042863 511 CRNLEYLFDDIDQL-RVLRSLLIAGCPCLI 539 (680)
Q Consensus 511 ~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~ 539 (680)
|...+.+|..++.. .++..+++.+|....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 76666676666542 455677777775443
No 133
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=6.1e-07 Score=98.95 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=92.3
Q ss_pred CCcEEecCCccccccCcccccccCcccEEEeccccccc-cccccCcccccceeecccccCcccchhhccCCcccceeecc
Q 042863 455 SLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL-QDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIA 533 (680)
Q Consensus 455 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 533 (680)
.++.|+|.+|...+.+|..++.+++|+.|++++|.+.. +|..+..+++|+.|++++|...+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999988888899999999999999999998874 46678889999999999988777889999999999999999
Q ss_pred cccCcccCCccCCCC-CCcCeEeecCCCCcc
Q 042863 534 GCPCLISLPPAMRYL-SSLETLMFVECESLS 563 (680)
Q Consensus 534 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 563 (680)
+|.+.+.+|..+... .++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999888888877653 467788888886554
No 134
>CHL00181 cbbX CbbX; Provisional
Probab=98.35 E-value=4.8e-05 Score=75.09 Aligned_cols=145 Identities=9% Similarity=0.129 Sum_probs=78.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...+.++|++|+|||++|+.+++............|+.++. .. +........ .....+.+.+ ..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~---a~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKK---AM 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHH---cc
Confidence 34688999999999999999987321111111111333331 11 222221111 1112222222 23
Q ss_pred eEEEEEecCCCC---------ChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhccC----CC-CCceeCCCCChhhHH
Q 042863 106 RYLLVMDDVWNE---------DPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTR----GG-TTGYNLQGLPLEDCL 171 (680)
Q Consensus 106 ~~llvlD~~~~~---------~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~----~~-~~~~~l~~l~~~~~~ 171 (680)
.-+|++|+++.. .....+.+...+.......+||+++............ .+ ...+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999642 2233344555565555567777777654332211100 01 246899999999999
Q ss_pred HHHHHHhcccCCCCC
Q 042863 172 SLFMKCAFKEERDKH 186 (680)
Q Consensus 172 ~l~~~~~~~~~~~~~ 186 (680)
+++...+........
T Consensus 203 ~I~~~~l~~~~~~l~ 217 (287)
T CHL00181 203 QIAKIMLEEQQYQLT 217 (287)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999998865543333
No 135
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=9e-06 Score=81.60 Aligned_cols=171 Identities=14% Similarity=0.174 Sum_probs=101.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC--------CCCcCHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN--------QGDLDIEQLQ 95 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~ 95 (680)
.-+..+.++|+.|+|||++|+.+++..--..... ....+.....+.+...-+++. .....++++.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 3456788999999999999999987421111000 011111222222222222110 0123345444
Q ss_pred HHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccCCCCCceeCCCCChhhH
Q 042863 96 RILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTRGGTTGYNLQGLPLEDC 170 (680)
Q Consensus 96 ~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~ 170 (680)
+...... .+.+=++|+|+++..+....+.+...+..-+.++.+|++|.++. +...+ ..++..+.+.+++++++
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI--~SRc~~~~~~~~~~~~~ 170 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI--KSRCQQQACPLPSNEES 170 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH--HhhceeeeCCCcCHHHH
Confidence 4333221 23334557799998888888888887777666777777777664 22222 24567899999999999
Q ss_pred HHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 171 LSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
.+.+...... .. .+.+..++..++|.|.....+
T Consensus 171 ~~~L~~~~~~----~~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 171 LQWLQQALPE----SD---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHhccc----CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 9999775311 11 244567889999999755444
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.35 E-value=3.9e-06 Score=95.07 Aligned_cols=179 Identities=14% Similarity=0.098 Sum_probs=96.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC------Cc-EEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF------EL-KIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~ 73 (680)
++||+++++++.+.|.+. ....+.++|++|+|||++|+.+++ ++.... .. ++.++.+.-.
T Consensus 189 ~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l~----- 255 (852)
T TIGR03345 189 VLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLLQ----- 255 (852)
T ss_pred ccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhhh-----
Confidence 589999999999999762 234677999999999999999998 443221 12 2223322100
Q ss_pred HHHHHHHhcCCCCCCcCH-HHHHHHHHHHh-CCceEEEEEecCCCCCh-----hHHH---HHHHhcCCCCCCCEEEEecC
Q 042863 74 MTKIIKSITGQNQGDLDI-EQLQRILRVCL-NGKRYLLVMDDVWNEDP-----KVWD---KLKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l-~~~~~llvlD~~~~~~~-----~~~~---~l~~~l~~~~~~~~iiiTsR 143 (680)
....-..+. +.+...+.+.. .+.+++|++|++|.... ...+ .+.+.+.+ ...++|-+|.
T Consensus 256 ---------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT 324 (852)
T TIGR03345 256 ---------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATT 324 (852)
T ss_pred ---------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecC
Confidence 000001111 12222333322 24689999999966321 1112 23333322 2355666665
Q ss_pred chHHHH----hhccCCCCCceeCCCCChhhHHHHHHHHhcccCC-CCCchHHHHHHHHHHhhCCC
Q 042863 144 SNKVAS----VMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEER-DKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 144 ~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~ 203 (680)
...... ......+...+.+++++.+++.++++........ ..-.-.++....+++.+.+.
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 432211 1111123467999999999999997655432211 01111234455666666543
No 137
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.33 E-value=3.5e-05 Score=76.16 Aligned_cols=139 Identities=10% Similarity=0.138 Sum_probs=76.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
..+.++|++|.|||++|+.+++............|+.++. .. ++..+... +.....+.+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~-----~~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH-----TAPKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc-----chHHHHHHHHHc---cC
Confidence 4789999999999999988877322111111112333321 11 22222111 112222333332 33
Q ss_pred EEEEEecCCCC---------ChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhccC----CC-CCceeCCCCChhhHHH
Q 042863 107 YLLVMDDVWNE---------DPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTR----GG-TTGYNLQGLPLEDCLS 172 (680)
Q Consensus 107 ~llvlD~~~~~---------~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~----~~-~~~~~l~~l~~~~~~~ 172 (680)
-+|++|+++.. .....+.+...+.....+.+||.++............ .+ ...+.+++++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68899999632 1223345556666555567777777644322221110 01 1458999999999999
Q ss_pred HHHHHhccc
Q 042863 173 LFMKCAFKE 181 (680)
Q Consensus 173 l~~~~~~~~ 181 (680)
++...+...
T Consensus 203 I~~~~l~~~ 211 (284)
T TIGR02880 203 IAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHh
Confidence 999887554
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.32 E-value=5e-06 Score=94.71 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=87.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-----C-CcEEEE-EeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-----F-ELKIWI-CISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~ 73 (680)
++||+++++++.+.|.+. ....+.++|++|+|||++|+.+++ ++... . ...+|. +.. .
T Consensus 181 ~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~~l~~~------~- 245 (821)
T CHL00095 181 VIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVITLDIG------L- 245 (821)
T ss_pred CCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeHH------H-
Confidence 489999999999999762 334678999999999999999988 33211 1 223332 211 1
Q ss_pred HHHHHHHhcCCCCCCcCHH-HHHHHHHHHhCCceEEEEEecCCCC--------ChhHHHHHHHhcCCCCCCCEEEEecCc
Q 042863 74 MTKIIKSITGQNQGDLDIE-QLQRILRVCLNGKRYLLVMDDVWNE--------DPKVWDKLKSLLSGGAKGSKILVTTRS 144 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~llvlD~~~~~--------~~~~~~~l~~~l~~~~~~~~iiiTsR~ 144 (680)
++. .... ..+.+ .+...+.+..+..+.+|++|+++.. +....+.+.+.+.+. ..++|.+|..
T Consensus 246 ---l~a---g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~ 316 (821)
T CHL00095 246 ---LLA---GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTL 316 (821)
T ss_pred ---Hhc---cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCH
Confidence 110 1111 11222 2333333333456799999999531 111122233333322 3456665555
Q ss_pred hHHHHhh----ccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 145 NKVASVM----GTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 145 ~~~~~~~----~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
....... ....+...+.+++.+.++..++++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 4432211 111234568899999999988887643
No 139
>PF14516 AAA_35: AAA-like domain
Probab=98.32 E-value=4.4e-05 Score=77.33 Aligned_cols=199 Identities=16% Similarity=0.163 Sum_probs=113.9
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc-----CCHHHHHH-
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED-----FGERQIMT- 75 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 75 (680)
|.|...-+++.+.+... -..+.|.|+-.+|||+|..++.+ .....--.++++++... .+....++
T Consensus 14 i~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred cCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHHHH
Confidence 56775666666666441 14899999999999999999987 44333234668876652 23444444
Q ss_pred ---HHHHHhcCCCC-------CCcCHHHHHHHHHHHh---CCceEEEEEecCCCCC--hh----HHHHHHHhcCCCC---
Q 042863 76 ---KIIKSITGQNQ-------GDLDIEQLQRILRVCL---NGKRYLLVMDDVWNED--PK----VWDKLKSLLSGGA--- 133 (680)
Q Consensus 76 ---~~~~~l~~~~~-------~~~~~~~~~~~~~~~l---~~~~~llvlD~~~~~~--~~----~~~~l~~~l~~~~--- 133 (680)
.+.+++..... ...+.......+.+.+ -+++.+|++|+++..- .. -+..++.+.....
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 44444433221 1112334444454432 2678999999995421 11 1122223222111
Q ss_pred --CCCEEEEecCch-HHHHhh--ccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 134 --KGSKILVTTRSN-KVASVM--GTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 134 --~~~~iiiTsR~~-~~~~~~--~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
...++++....+ ...... +.......+.|++|+.+|+..|+++.... ..+ ....+|...+||+|..+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~---~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQ---EQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCH---HHHHHHHHHHCCCHHHHH
Confidence 111222222211 111000 00112246889999999999999886422 111 337899999999999999
Q ss_pred HHHhhhcc
Q 042863 209 TLGSLLYC 216 (680)
Q Consensus 209 ~~~~~l~~ 216 (680)
.++..+..
T Consensus 238 ~~~~~l~~ 245 (331)
T PF14516_consen 238 KACYLLVE 245 (331)
T ss_pred HHHHHHHH
Confidence 99999964
No 140
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=1.4e-07 Score=88.20 Aligned_cols=129 Identities=29% Similarity=0.323 Sum_probs=84.9
Q ss_pred cCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEE
Q 042863 405 KSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFE 484 (680)
Q Consensus 405 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 484 (680)
..+.|+.+||++|.|+.+.+++.-.|.++.|++++|... .+.. +..+++|+.|+|++|. +..+...=.++.|.+.|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 445677778888877777777777778888888777433 2222 6677778888887763 333443334566777777
Q ss_pred eccccccccccccCcccccceeecccccCcccc--hhhccCCcccceeecccccCc
Q 042863 485 VTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYL--FDDIDQLRVLRSLLIAGCPCL 538 (680)
Q Consensus 485 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 538 (680)
++.|.+... ..++++-+|..|++.+|+ +..+ ...++.+|-|+.+.+.+|++.
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777766554 455666777777777765 2222 134667777788877777654
No 141
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.7e-05 Score=79.44 Aligned_cols=211 Identities=14% Similarity=0.091 Sum_probs=129.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
.+||+.|++.+.+++..-. .......+.|.|-+|.|||.+...+..+..-...-..++++++..-.....++..+...
T Consensus 152 l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred ccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 3799999999999997643 12345689999999999999999888743322222356899988877788888888888
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCC--ceEEEEEecCCCCChhHHHHHHHh--cCCCCCCCEEEE-ecCch------HHHH
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNG--KRYLLVMDDVWNEDPKVWDKLKSL--LSGGAKGSKILV-TTRSN------KVAS 149 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~--~~~llvlD~~~~~~~~~~~~l~~~--l~~~~~~~~iii-TsR~~------~~~~ 149 (680)
+...........+.++.+.++..+ ..+|+|+|+.+......-..+... |+.. +++++|+ ---+. .+..
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l-p~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL-PNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC-CcceeeeeeehhhhhHHHHHhhh
Confidence 743332232335556666666643 358999999843211111112222 2222 2444433 11111 1111
Q ss_pred hhc-cCCCCCceeCCCCChhhHHHHHHHHhcccC--CCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 150 VMG-TRGGTTGYNLQGLPLEDCLSLFMKCAFKEE--RDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 150 ~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
... ..-..+.+..+|.+.++..++++.+..... ....+..+-.|++++..+|.+-.|+-+.-+++
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 110 111235678899999999999998875542 12223455566777777777777777666555
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.29 E-value=2.4e-05 Score=83.19 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=97.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcC--CcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF--ELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL 102 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 102 (680)
....++|+|++|+|||.|++.+++ .....+ ..++|++... ...++...+.. ...+ .+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~-----~~~~----~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSEK------FTNDFVNALRN-----NTME----EFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHHH------HHHHHHHHHHc-----CcHH----HHHHHH
Confidence 345799999999999999999998 444443 3356775542 23333333321 1122 222233
Q ss_pred CCceEEEEEecCCCCCh--hHHHHHHHhcCC-CCCCCEEEEecCchH--HH---Hhhc-cCCCCCceeCCCCChhhHHHH
Q 042863 103 NGKRYLLVMDDVWNEDP--KVWDKLKSLLSG-GAKGSKILVTTRSNK--VA---SVMG-TRGGTTGYNLQGLPLEDCLSL 173 (680)
Q Consensus 103 ~~~~~llvlD~~~~~~~--~~~~~l~~~l~~-~~~~~~iiiTsR~~~--~~---~~~~-~~~~~~~~~l~~l~~~~~~~l 173 (680)
+ ..-+||+||++.... ...+.+...+.. ...+..+|+|+.... +. ..+. .......+++++.+.++..++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 244899999965321 112233333322 122334777776542 11 1111 112224689999999999999
Q ss_pred HHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 174 FMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+++.+.......+ ++++..|++.++|....+.-+-
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l 323 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGAL 323 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHH
Confidence 9998865433333 3678999999999887554443
No 143
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.28 E-value=3.8e-05 Score=80.66 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=97.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcC--CcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHF--ELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
...++|+|++|+|||.|++.+++ ...+.. ..++|+++. .....+...+... ..+... +.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~~----~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSSE------KFTNDFVNALRNN-----KMEEFK----EKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC-----CHHHHH----HHHH
Confidence 45689999999999999999998 443332 346677543 2333444444221 222222 2222
Q ss_pred CceEEEEEecCCCCChh--HHHHHHHhcCC-CCCCCEEEEecCch-HHHHh----hc-cCCCCCceeCCCCChhhHHHHH
Q 042863 104 GKRYLLVMDDVWNEDPK--VWDKLKSLLSG-GAKGSKILVTTRSN-KVASV----MG-TRGGTTGYNLQGLPLEDCLSLF 174 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~~--~~~~l~~~l~~-~~~~~~iiiTsR~~-~~~~~----~~-~~~~~~~~~l~~l~~~~~~~l~ 174 (680)
+ .-+||+||++..... ....+...+.. ...+..+|+|+... ..... .. .......+.+++.+.++..+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348899999653211 11223333332 12244577777643 21111 11 1111235889999999999999
Q ss_pred HHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 175 MKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
++.+.......+ ++++..|++.+.|....+.-+..
T Consensus 278 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 278 QKKAEEEGLELP---DEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 998866544333 37778999999998886555443
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.28 E-value=2e-05 Score=82.94 Aligned_cols=167 Identities=17% Similarity=0.096 Sum_probs=98.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcC--CcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHF--ELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
...+++||++|+|||.|++.+++ .....+ ..++|++.. .....+...+... ..+. +.+.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 44699999999999999999998 444433 246777653 3444554444211 1222 222233
Q ss_pred CceEEEEEecCCCC-Chh-HHHHHHHhcCC-CCCCCEEEEecC-chHHHHhh----c-cCCCCCceeCCCCChhhHHHHH
Q 042863 104 GKRYLLVMDDVWNE-DPK-VWDKLKSLLSG-GAKGSKILVTTR-SNKVASVM----G-TRGGTTGYNLQGLPLEDCLSLF 174 (680)
Q Consensus 104 ~~~~llvlD~~~~~-~~~-~~~~l~~~l~~-~~~~~~iiiTsR-~~~~~~~~----~-~~~~~~~~~l~~l~~~~~~~l~ 174 (680)
...-+|++||++.. +.. .-..+...+.. ...+..+|+||. .+...... . ....-..+.+++.+.++..+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34568999999642 111 11223333322 122345788774 43221111 1 1112246789999999999999
Q ss_pred HHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 175 MKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
++.+.......+ ++++..|++.+.|....+.-+..
T Consensus 273 ~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 273 RKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred HHHHHhcCCCCC---HHHHHHHHhccccCHHHHHHHHH
Confidence 998865433333 36788999999988765555443
No 145
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=8.2e-07 Score=65.05 Aligned_cols=59 Identities=31% Similarity=0.435 Sum_probs=42.7
Q ss_pred cceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCcc
Q 042863 407 QFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECL 465 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 465 (680)
|+|++|++++|.++.+|. .+.++++|++|++++|......+..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888888877764 56778888888888775554445567778888888877764
No 146
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.2e-05 Score=74.18 Aligned_cols=187 Identities=19% Similarity=0.189 Sum_probs=106.5
Q ss_pred CchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMT 75 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (680)
|=++++++|.+.+.-+-. -+=..++=|.+|||+|.|||-||+++|+ +.... |+-+... ++..
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~At-----FIrvvgS----ElVq 223 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDAT-----FIRVVGS----ELVQ 223 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCce-----EEEeccH----HHHH
Confidence 457788888888754331 1124567899999999999999999998 44433 4433321 2222
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhC-CceEEEEEecCCC-----------CChhHHHH---HHHhcCCCC--CCCEE
Q 042863 76 KIIKSITGQNQGDLDIEQLQRILRVCLN-GKRYLLVMDDVWN-----------EDPKVWDK---LKSLLSGGA--KGSKI 138 (680)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~llvlD~~~~-----------~~~~~~~~---l~~~l~~~~--~~~~i 138 (680)
..+.+ -..+++.+-+..+ ..+.+|++|+++. .+.+...- +..-+..+. ...+|
T Consensus 224 KYiGE----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 224 KYIGE----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred HHhcc----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 22211 1233344444433 4579999998833 12222222 333344443 36789
Q ss_pred EEecCchHHHHhhccCCC--CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh----hHHHHHHh
Q 042863 139 LVTTRSNKVASVMGTRGG--TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP----LAVRTLGS 212 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----l~l~~~~~ 212 (680)
|.+|...+.....-.+++ .+.|+++.-+.+.-.++|+-.+.+-....+-+. +.+++.+.|.- .++..=|+
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHHh
Confidence 998887654443333222 256888866667777888777765554444333 35566665543 34444444
Q ss_pred hh
Q 042863 213 LL 214 (680)
Q Consensus 213 ~l 214 (680)
++
T Consensus 370 m~ 371 (406)
T COG1222 370 MF 371 (406)
T ss_pred HH
Confidence 44
No 147
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.4e-05 Score=78.07 Aligned_cols=161 Identities=11% Similarity=0.127 Sum_probs=95.9
Q ss_pred CC-chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCHHHHHHHHHH
Q 042863 2 IG-RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 2 vg-R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
+| .+...+.+.+.+.. +.-+....++|+.|+|||++|+.+++.. .... ... .........+.+..
T Consensus 8 ~~~q~~~~~~L~~~~~~-----~~l~ha~Lf~G~~G~gk~~~a~~la~~l-~c~~~~~~-------~~cg~C~~c~~~~~ 74 (329)
T PRK08058 8 TALQPVVVKMLQNSIAK-----NRLSHAYLFEGAKGTGKKATALWLAKSL-FCLERNGV-------EPCGTCTNCKRIDS 74 (329)
T ss_pred HhhHHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHH-CCCCCCCC-------CCCCcCHHHHHHhc
Confidence 34 67777888888754 2345667899999999999999998741 1111 000 00111112222211
Q ss_pred HhcCC------CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HH
Q 042863 80 SITGQ------NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VA 148 (680)
Q Consensus 80 ~l~~~------~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~ 148 (680)
.-+++ +......+++...+... ..+.+=++|+|+++..+....+.+...+..-+..+.+|++|.++. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 11111 01112344444433322 234456899999988887777888888887676777777776543 22
Q ss_pred HhhccCCCCCceeCCCCChhhHHHHHHHH
Q 042863 149 SVMGTRGGTTGYNLQGLPLEDCLSLFMKC 177 (680)
Q Consensus 149 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 177 (680)
... ..+...++++++++++..+.+...
T Consensus 155 ~TI--rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTI--LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHH--HhhceeeeCCCCCHHHHHHHHHHc
Confidence 222 234578999999999998888653
No 148
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=5.9e-06 Score=83.42 Aligned_cols=160 Identities=21% Similarity=0.319 Sum_probs=88.1
Q ss_pred hcCCCCCcEEecCCccccccCcccccccCcccEEEeccccc-cccccccCcccccceeecccccCcccchhhccCCcccc
Q 042863 450 ICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQK-SLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLR 528 (680)
Q Consensus 450 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 528 (680)
+..+.+++.|++++| .+..+|. -..+|+.|.+++|.. ...|..+ .++|+.|.+++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 334678888888887 5666662 234688888877544 3334333 35788888888766665553 355
Q ss_pred eeecccccC--cccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhh
Q 042863 529 SLLIAGCPC--LISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQ 606 (680)
Q Consensus 529 ~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 606 (680)
.|++.++.. .+.+|. +|+.|.+.++.... ....+ ..-+++|+.|++.+|..+ .+|..
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~---------~~~lp--~~LPsSLk~L~Is~c~~i-~LP~~--- 174 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPEN---------QARID--NLISPSLKTLSLTGCSNI-ILPEK--- 174 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccc---------ccccc--cccCCcccEEEecCCCcc-cCccc---
Confidence 566654332 233333 56666664432111 00001 123467888888888643 33321
Q ss_pred hhcccCCccceeeeccCCCCC-CCC-cCC-CCCCeEEEcCCccc
Q 042863 607 ESLRNFQALEGLVIGNCPKLL-SLP-EDM-LHLKTLRIRGCPAL 647 (680)
Q Consensus 607 ~~l~~~~~L~~L~l~~~~~~~-~l~-~~~-~~L~~l~l~~c~~l 647 (680)
-..+|+.|+++.|.... .++ ..+ +++ .|++.+|..+
T Consensus 175 ----LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 175 ----LPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ----ccccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 12578888887653211 111 122 355 7777777443
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=8.2e-05 Score=78.05 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=91.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++|+|++|+|||+|++.+++ ........++|++.. .....+...+... .. ..+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~~------~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRSE------LFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeHH------HHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 45789999999999999999998 443333456677642 3333444443211 11 12333332 3
Q ss_pred eEEEEEecCCCCCh--hHHHHHHHhcCC-CCCCCEEEEecCch-H----HHHhhcc-CCCCCceeCCCCChhhHHHHHHH
Q 042863 106 RYLLVMDDVWNEDP--KVWDKLKSLLSG-GAKGSKILVTTRSN-K----VASVMGT-RGGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 106 ~~llvlD~~~~~~~--~~~~~l~~~l~~-~~~~~~iiiTsR~~-~----~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
.-++++||++.... ...+.+...+.. ...+..||+||... . +...+.. ...-..+++++++.++..+++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999965322 122233333321 11244577777543 2 1111111 11224688999999999999999
Q ss_pred HhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 177 CAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
.+.......+ ++++..|+....+.-.
T Consensus 283 k~~~~~~~l~---~evl~~la~~~~~dir 308 (445)
T PRK12422 283 KAEALSIRIE---ETALDFLIEALSSNVK 308 (445)
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCCCHH
Confidence 8865543333 3566778887776553
No 150
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.21 E-value=4.7e-05 Score=80.18 Aligned_cols=209 Identities=16% Similarity=0.139 Sum_probs=131.6
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchh---hhhcCCc--EEEEEeCCcCCHHHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQR---VEEHFEL--KIWICISEDFGERQIMTKI 77 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (680)
+|+.|..+|...+...... .+.-..+.|.|.+|.|||..+++++...+ .+..-+. .+.++...-..+.+++..|
T Consensus 400 cRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I 478 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKI 478 (767)
T ss_pred chhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHH
Confidence 7999999999999887644 23445899999999999999999998533 1222232 3455666667788888888
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCC-CCCCCEEEEec-Cch-----
Q 042863 78 IKSITGQNQGDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSG-GAKGSKILVTT-RSN----- 145 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~-~~~~~~iiiTs-R~~----- 145 (680)
..++..... ......+.+...+ +.+.++|++|+++..=....+-+..++.+ ..++++++|.+ -+-
T Consensus 479 ~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPE 555 (767)
T KOG1514|consen 479 WEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPE 555 (767)
T ss_pred HHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHH
Confidence 888854422 2222333333333 23468999998833111122344455554 34466654422 211
Q ss_pred -HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhc
Q 042863 146 -KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLY 215 (680)
Q Consensus 146 -~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 215 (680)
.+.......-+...+...|.+..+-.++...+......-.....+-+|++++..+|..-.|+....++..
T Consensus 556 r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 556 RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111111222335688899999999999998886554444445556677888888888888777666553
No 151
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=8.2e-05 Score=73.97 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=105.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-----------------cCCcEEEEEeCCcC
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-----------------HFELKIWICISEDF 68 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 68 (680)
...+.+.+.+.. +.-+..+.++|+.|+||+++|..+++.. ... .++.+.|+......
T Consensus 11 ~~~~~l~~~~~~-----~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L-lC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDA-----GRLGHGLLICGPEGLGKRAVALALAEHV-LASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR 84 (319)
T ss_pred HHHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHH-hCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc
Confidence 445566666644 2345568899999999999999998731 111 12222233110000
Q ss_pred CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCc
Q 042863 69 GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRS 144 (680)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~ 144 (680)
. +........++++.+...... .+++=++|+|+++..+......+...+-.-+.++.+|++|.+
T Consensus 85 ~------------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 85 T------------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred c------------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 0 000001123444433332221 234568999999888877777787777776667777777765
Q ss_pred hH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 145 NK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 145 ~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+. +...+. .++..+.+.+.+.+++.+.+.... .+ ...+..++..++|.|.....++
T Consensus 153 ~~~lLpTIr--SRCq~i~~~~~~~~~~~~~L~~~~------~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 153 PARLPATIR--SRCQRLEFKLPPAHEALAWLLAQG------VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhhCchHHH--hhheEeeCCCcCHHHHHHHHHHcC------CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 43 332222 345788999999999998887531 11 1335678999999998665443
No 152
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.19 E-value=4.7e-06 Score=72.45 Aligned_cols=97 Identities=24% Similarity=0.211 Sum_probs=56.0
Q ss_pred EEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc-eE
Q 042863 29 IPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK-RY 107 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~ 107 (680)
|.|+|++|+|||++|+.+++. ... .++.++.....+. ........+...+.+.-+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~---~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGF---PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTS---EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--ccc---ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999983 321 2445554331100 11112222333333333333 79
Q ss_pred EEEEecCCCCChhH-----------HHHHHHhcCCCCC---CCEEEEecCch
Q 042863 108 LLVMDDVWNEDPKV-----------WDKLKSLLSGGAK---GSKILVTTRSN 145 (680)
Q Consensus 108 llvlD~~~~~~~~~-----------~~~l~~~l~~~~~---~~~iiiTsR~~ 145 (680)
+|++||++...... ...+...+..... +..+|.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999996644443 4556666555432 45667777653
No 153
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.18 E-value=1e-05 Score=83.83 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=88.7
Q ss_pred CCchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|.+++++++.+.+.-+.. -+-..++.+.++|++|.|||++|+.+++ .....| +.+..+. +.
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se------L~ 254 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE------LI 254 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch------hh
Confidence 4778888888887753210 0113456799999999999999999998 433332 2222111 11
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhHHHHHHHh---cCC--CCCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKVWDKLKSL---LSG--GAKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~~~~l~~~---l~~--~~~~~~i 138 (680)
. ... ......+...+.......+.+|++|+++.. +......+..+ +.. ...+..|
T Consensus 255 ~----k~~-----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~V 325 (438)
T PTZ00361 255 Q----KYL-----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKV 325 (438)
T ss_pred h----hhc-----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEE
Confidence 1 000 001112222333333456789999987321 01111112222 222 1235678
Q ss_pred EEecCchHHHHhhccC-CC-CCceeCCCCChhhHHHHHHHHhcccC
Q 042863 139 LVTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCLSLFMKCAFKEE 182 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~ 182 (680)
|+||.........-.. ++ ...+.++..+.++..++|+....+..
T Consensus 326 I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~ 371 (438)
T PTZ00361 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT 371 (438)
T ss_pred EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 8888765443332111 11 24689999999999999998775543
No 154
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.17 E-value=2e-05 Score=81.21 Aligned_cols=186 Identities=18% Similarity=0.191 Sum_probs=99.0
Q ss_pred CCchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|-+.+.+++.+.+.-+.. -+-..++.+.++|++|.|||++|+.+++ .....| +.+..+ .+
T Consensus 148 gGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f---i~i~~s------~l- 215 (398)
T PTZ00454 148 GGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF---IRVVGS------EF- 215 (398)
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEehH------HH-
Confidence 5777788888777642210 1123568899999999999999999988 322221 222111 11
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhH---HHHHHHhcCCC--CCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKV---WDKLKSLLSGG--AKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~---~~~l~~~l~~~--~~~~~i 138 (680)
...... .....+...+.......+.+|++|+++.. +... +..+...+... ..+..|
T Consensus 216 ---~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 216 ---VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred ---HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 111100 01112222333333467899999997431 1111 11222223221 235667
Q ss_pred EEecCchHHHHhhccC-CC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC-hhHHHHHH
Q 042863 139 LVTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI-PLAVRTLG 211 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~ 211 (680)
|+||.........-.+ ++ ...+.++..+.++..++|+....+......-. ...+++.+.|. |.-|..++
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sgaDI~~l~ 359 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISAADIAAIC 359 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCHHHHHHHH
Confidence 8888765433221111 11 24588999999999999988775443322222 34666666554 44444443
No 155
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=1.7e-05 Score=85.75 Aligned_cols=200 Identities=10% Similarity=0.105 Sum_probs=97.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC---CcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS---EDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (680)
++|.++.++++..++.... -.....++++|+|++|+||||+++.++.... ++..-|.+.. ...+.......+
T Consensus 86 l~~~~~ki~~l~~~l~~~~-~~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~~~~s~ 160 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQV-LENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHKVTLSL 160 (637)
T ss_pred hcCcHHHHHHHHHHHHhcc-cccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccccccchhh
Confidence 4678888999999987633 1122346799999999999999999987322 1112232110 000000000111
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHH-------hCCceEEEEEecCCC---CChhHHHHHHH-hcCCCCCCCEEEEecCchH
Q 042863 78 IKSITGQNQGDLDIEQLQRILRVC-------LNGKRYLLVMDDVWN---EDPKVWDKLKS-LLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~-------l~~~~~llvlD~~~~---~~~~~~~~l~~-~l~~~~~~~~iiiTsR~~~ 146 (680)
.+.+............+....... ..+++.+|++|++.. .....+..+.. .....+.-..|+++|-+..
T Consensus 161 ~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~ 240 (637)
T TIGR00602 161 ESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLE 240 (637)
T ss_pred hhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCcc
Confidence 111111000000111111111111 134677999999832 12222333333 2222332234555553211
Q ss_pred ---------HH------HhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCc----hHHHHHHHHHHhhCCChh
Q 042863 147 ---------VA------SVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHP----NLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 147 ---------~~------~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~i~~~~~g~Pl 205 (680)
+. .......+...+...|++..+..+.+.+.+......... ..++....|+..++|--.
T Consensus 241 ~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 241 GDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred ccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 11 111112344568999999999888888877543111101 012455677777777554
No 156
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.16 E-value=1.5e-05 Score=72.05 Aligned_cols=153 Identities=12% Similarity=0.207 Sum_probs=86.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
+||-++.++++.-.-.. +..+.+.+.||+|+||||-+..+++. -....| +++.-.+.+....+
T Consensus 29 IVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeRGI--------- 92 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDERGI--------- 92 (333)
T ss_pred hhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCcccccc---------
Confidence 47888888887766644 56778999999999999999888873 223222 44444444443333
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHh-------CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhh
Q 042863 80 SITGQNQGDLDIEQLQRILRVCL-------NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVM 151 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l-------~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~ 151 (680)
+.+...++.+. .+++-++|+|+++.+.......++.-+.-....+|+.+...... +.+..
T Consensus 93 ------------DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPI 160 (333)
T KOG0991|consen 93 ------------DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPI 160 (333)
T ss_pred ------------HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhH
Confidence 33333333332 35677999999987766655555554444444445544433221 11111
Q ss_pred ccCCCCCceeCCCCChhhHHHHHHHHhcccCC
Q 042863 152 GTRGGTTGYNLQGLPLEDCLSLFMKCAFKEER 183 (680)
Q Consensus 152 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 183 (680)
. .++..+.-..+++.+...=+...+..+..
T Consensus 161 Q--SRCAiLRysklsd~qiL~Rl~~v~k~Ekv 190 (333)
T KOG0991|consen 161 Q--SRCAILRYSKLSDQQILKRLLEVAKAEKV 190 (333)
T ss_pred H--hhhHhhhhcccCHHHHHHHHHHHHHHhCC
Confidence 1 11233445566666655555555544433
No 157
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.16 E-value=5.3e-05 Score=84.28 Aligned_cols=155 Identities=19% Similarity=0.273 Sum_probs=86.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc------CCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH------FELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 74 (680)
++||+++++++.+.|.+. ....+.++|++|+|||++|+.+++ +.... .+..+|.. +...
T Consensus 188 liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~--~i~~~~vP~~l~~~~~~~l-----~~~~-- 252 (758)
T PRK11034 188 LIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSL-----DIGS-- 252 (758)
T ss_pred CcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHH--HHHhcCCCchhcCCeEEec-----cHHH--
Confidence 489999999999999772 223567899999999999999987 32211 12233321 1111
Q ss_pred HHHHHHhcCCCCCCcCHHHHH-HHHHHHhCCceEEEEEecCCCC--------ChhHHHH-HHHhcCCCCCCCEEEEecCc
Q 042863 75 TKIIKSITGQNQGDLDIEQLQ-RILRVCLNGKRYLLVMDDVWNE--------DPKVWDK-LKSLLSGGAKGSKILVTTRS 144 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~llvlD~~~~~--------~~~~~~~-l~~~l~~~~~~~~iiiTsR~ 144 (680)
++ .+.. -..+.+... ..+.+.-+..+.+|++|+++.. ....... +..++.. ...++|-+|..
T Consensus 253 --ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~ 324 (758)
T PRK11034 253 --LL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTY 324 (758)
T ss_pred --Hh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCCh
Confidence 11 0011 111222222 2222222456789999999641 1112222 3333332 23455555554
Q ss_pred hHHHHhh----ccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 145 NKVASVM----GTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 145 ~~~~~~~----~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
..+.... ....+...+.+++.+.+++.++++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4321110 001134679999999999999998765
No 158
>CHL00176 ftsH cell division protein; Validated
Probab=98.16 E-value=4.1e-05 Score=83.54 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=99.1
Q ss_pred CCchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMT 75 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (680)
.|.++..+++.+.+..... -+...++-+.++|++|.|||++|+.++. .... .|+.++.. ....
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~--e~~~-----p~i~is~s----~f~~ 254 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG--EAEV-----PFFSISGS----EFVE 254 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCC-----CeeeccHH----HHHH
Confidence 4555555555554432110 0123467799999999999999999987 3222 23332211 1110
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhH---HHHHHHhcCCC--CCCCEEE
Q 042863 76 KIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKV---WDKLKSLLSGG--AKGSKIL 139 (680)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~---~~~l~~~l~~~--~~~~~ii 139 (680)
... ......+...+.+.....+++|++||++.. +... +..+...+... ..+..||
T Consensus 255 ~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 255 MFV---------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred Hhh---------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 000 012223344455555677899999999532 1111 22222222222 2355566
Q ss_pred EecCchHHHHhhccC-CC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHH
Q 042863 140 VTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLG 211 (680)
Q Consensus 140 iTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~ 211 (680)
.||.........-.. ++ ...+.++..+.++..++++..+...... .+.....+++.+.| .+.-+..++
T Consensus 326 aaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 326 AATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred EecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCCCHHHHHHHH
Confidence 677665432221111 11 1457888889999999999887543211 12345678888887 444444443
No 159
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00011 Score=73.28 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-
Q 042863 7 DREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN- 85 (680)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 85 (680)
.-+.+.+.+.. +.-+....++|+.|+||+++|+.+++.. ....-. .....+.....+.+...-+++.
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~GK~~lA~~~A~~l-lC~~~~------~~~~Cg~C~sC~~~~~g~HPD~~ 77 (325)
T PRK06871 10 TYQQITQAFQQ-----GLGHHALLFKADSGLGTEQLIRALAQWL-MCQTPQ------GDQPCGQCHSCHLFQAGNHPDFH 77 (325)
T ss_pred HHHHHHHHHHc-----CCcceeEEeECCCCCCHHHHHHHHHHHH-cCCCCC------CCCCCCCCHHHHHHhcCCCCCEE
Confidence 34556666644 2335567789999999999999998741 111100 0011122233333332222211
Q ss_pred ------CCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccC
Q 042863 86 ------QGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTR 154 (680)
Q Consensus 86 ------~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~ 154 (680)
.....++++.+...... .+++=++|+|+++.........+...+-.-+.++.+|++|.++. +.....
T Consensus 78 ~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~-- 155 (325)
T PRK06871 78 ILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY-- 155 (325)
T ss_pred EEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH--
Confidence 11234555544333221 34455888999988888888888888887777777777776653 332222
Q ss_pred CCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 155 GGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 155 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
.++..+.+.+++++++.+.+...... . ...+...+..++|.|...
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~-----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA-----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc-----C---hHHHHHHHHHcCCCHHHH
Confidence 34578999999999999988876411 1 123567788899999633
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.13 E-value=3.2e-05 Score=88.48 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=85.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC------Cc-EEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF------EL-KIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~ 73 (680)
++||+++++++.+.|.+. ....+.++|++|+|||++|+.+++ ++...+ .. ++++++.. +
T Consensus 175 ~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~~~------l 240 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDMGA------L 240 (852)
T ss_pred CCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeHHH------H
Confidence 589999999999999762 234567899999999999999988 432211 11 22332211 0
Q ss_pred HHHHHHHhcCCCCCCcCHH-HHHHHHHHHhC-CceEEEEEecCCCCC-----hh---HHHHHHHhcCCCCCCCEEEEecC
Q 042863 74 MTKIIKSITGQNQGDLDIE-QLQRILRVCLN-GKRYLLVMDDVWNED-----PK---VWDKLKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~-~~~~llvlD~~~~~~-----~~---~~~~l~~~l~~~~~~~~iiiTsR 143 (680)
+. ... -..+.+ .+...+.+..+ +++.+|++|+++... .. ..+.+...+. ....++|-+|.
T Consensus 241 ----~a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt 310 (852)
T TIGR03346 241 ----IA---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATT 310 (852)
T ss_pred ----hh---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCc
Confidence 00 000 011222 23333333322 468999999996421 11 1122222221 12344555554
Q ss_pred chHHHH----hhccCCCCCceeCCCCChhhHHHHHHHHhcc
Q 042863 144 SNKVAS----VMGTRGGTTGYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 144 ~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
...... ......+...+.++..+.++..++++.....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 443211 1111123456889999999999999876433
No 161
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.10 E-value=9.6e-05 Score=77.91 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=89.5
Q ss_pred CCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-----CCcEEEEEeCCcCC
Q 042863 2 IGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-----FELKIWICISEDFG 69 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 69 (680)
.|.+++++++.+.+..+. ..+-..++-+.+|||+|+|||++|+.+++. .... .....|+++....
T Consensus 185 gGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~e- 261 (512)
T TIGR03689 185 GGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGPE- 261 (512)
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccchh-
Confidence 467888888888764211 011234567999999999999999999983 3222 1234455543311
Q ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH-hCCceEEEEEecCCCCC-------hh-----HHHHHHHhcCCCC--C
Q 042863 70 ERQIMTKIIKSITGQNQGDLDIEQLQRILRVC-LNGKRYLLVMDDVWNED-------PK-----VWDKLKSLLSGGA--K 134 (680)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlD~~~~~~-------~~-----~~~~l~~~l~~~~--~ 134 (680)
++.....+ .......+.....+. ..+++++|+||+++..- .. ...++...+.... .
T Consensus 262 ---Ll~kyvGe------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 262 ---LLNKYVGE------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred ---hcccccch------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC
Confidence 11000000 000011122222222 23568999999995410 00 1223444444322 3
Q ss_pred CCEEEEecCchHHHHhhccC-CCC-CceeCCCCChhhHHHHHHHHhcc
Q 042863 135 GSKILVTTRSNKVASVMGTR-GGT-TGYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 135 ~~~iiiTsR~~~~~~~~~~~-~~~-~~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
+..||.||.........-.+ ++. ..+.++..+.++..++|+.+...
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 45566666555332221111 121 35899999999999999998743
No 162
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.08 E-value=0.00023 Score=71.91 Aligned_cols=205 Identities=17% Similarity=0.194 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHH-HHhhcchhhhhcCCcEEEEEeCC---cCCHHHHHHHHHH
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALA-QLVFNDQRVEEHFELKIWICISE---DFGERQIMTKIIK 79 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 79 (680)
|.+.+++|..||.. .....|+|+||-|+||+.|+ .++..+ ...+++++|.. ..+....+..++.
T Consensus 1 R~e~~~~L~~wL~e------~~~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE------NPNTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhc------CCCeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 67889999999976 34579999999999999999 555542 23377887664 2233445555555
Q ss_pred HhcC-C--------------------CCC---CcCH-HHHHH-------HHHHH-------------------h---CCc
Q 042863 80 SITG-Q--------------------NQG---DLDI-EQLQR-------ILRVC-------------------L---NGK 105 (680)
Q Consensus 80 ~l~~-~--------------------~~~---~~~~-~~~~~-------~~~~~-------------------l---~~~ 105 (680)
+.|= + +.. ..+. .++.. .+++. + ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 5431 1 000 0111 11111 11110 0 012
Q ss_pred eEEEEEecCCCCC---hhHHHHHHH---hcCCCCCCCEEEEecCchHHHHhhccC---CCCCceeCCCCChhhHHHHHHH
Q 042863 106 RYLLVMDDVWNED---PKVWDKLKS---LLSGGAKGSKILVTTRSNKVASVMGTR---GGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 106 ~~llvlD~~~~~~---~~~~~~l~~---~l~~~~~~~~iiiTsR~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
+.+||+||+.... ...|+.+.. .+... .-.+||+.|-+......+... ...+.+.+...+.+.|..|...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~-nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQN-NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhc-CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 5799999995421 222333332 23333 345688777665433332211 2335688999999999999998
Q ss_pred HhcccCCC-------------C----CchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChh
Q 042863 177 CAFKEERD-------------K----HPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEH 221 (680)
Q Consensus 177 ~~~~~~~~-------------~----~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~ 221 (680)
........ . ...........++..||--.-|..+++.++....+.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 88543110 0 012345567889999999999999999998666443
No 163
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.08 E-value=2.8e-06 Score=62.16 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=27.1
Q ss_pred CcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccc
Q 042863 431 HMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQ 489 (680)
Q Consensus 431 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 489 (680)
+|++|++++|.....-+..+..+++|++|++++|....--|..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555553222222344455555555555544332223344555555555555443
No 164
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.06 E-value=6.7e-06 Score=78.80 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=58.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc--CCHHHHHHHHHHHhcCCCCCCcC------HHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED--FGERQIMTKIIKSITGQNQGDLD------IEQLQRIL 98 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~ 98 (680)
..+.|.|++|+|||||++++++..... +|+..+|+.+... .++.++++.+...+......... .....+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 368899999999999999999853323 6888889886665 67788888873333322111111 11222223
Q ss_pred HHH-hCCceEEEEEecCCC
Q 042863 99 RVC-LNGKRYLLVMDDVWN 116 (680)
Q Consensus 99 ~~~-l~~~~~llvlD~~~~ 116 (680)
... -.++++++++|+++.
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 247899999999954
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.05 E-value=3.8e-05 Score=87.52 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=84.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC------C-cEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF------E-LKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~ 73 (680)
++||+.+++++.+.|.+. ....+.++|++|+|||++|+.+++ +..... . .++++++..-..
T Consensus 180 vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~vp~~l~~~~~~~l~l~~l~a---- 247 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMGALVA---- 247 (857)
T ss_pred CCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHH--HhhcCCCchhhCCCEEEEEehhhhhh----
Confidence 589999999999999762 234577999999999999999998 432211 1 233333322100
Q ss_pred HHHHHHHhcCCCCCCcCHH-HHHHHHHHHh-CCceEEEEEecCCCCCh-----h---HHHHHHHhcCCCCCCCEEEEecC
Q 042863 74 MTKIIKSITGQNQGDLDIE-QLQRILRVCL-NGKRYLLVMDDVWNEDP-----K---VWDKLKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l-~~~~~llvlD~~~~~~~-----~---~~~~l~~~l~~~~~~~~iiiTsR 143 (680)
. .....+.+ .+...+.+.. .+.+.+|++|+++.... . ..+.+.+.+.. ...++|-+|.
T Consensus 248 ---------g-~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt 315 (857)
T PRK10865 248 ---------G-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 315 (857)
T ss_pred ---------c-cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCC
Confidence 0 00011111 2223333322 25679999999965311 1 11223222222 2345555554
Q ss_pred chHHHHh----hccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 144 SNKVASV----MGTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 144 ~~~~~~~----~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
....... .....+...+.++.-+.+++..+++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 4432111 1111133467777778899999887655
No 166
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=8.6e-05 Score=79.31 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=96.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc--CCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH--FELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
..++|+|..|.|||.|++.+++ ..... ...++|++.. .+..++...+.. ...+ .+.+.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yitae------ef~~el~~al~~-----~~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSSE------EFTNEFINSIRD-----GKGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHh-----ccHH----HHHHHhhc
Confidence 3589999999999999999998 44332 2346677653 233334333311 1112 22233332
Q ss_pred ceEEEEEecCCCCChh-H-HHHHHHhcCC-CCCCCEEEEecCchH-----HHH-hhccCCCCCceeCCCCChhhHHHHHH
Q 042863 105 KRYLLVMDDVWNEDPK-V-WDKLKSLLSG-GAKGSKILVTTRSNK-----VAS-VMGTRGGTTGYNLQGLPLEDCLSLFM 175 (680)
Q Consensus 105 ~~~llvlD~~~~~~~~-~-~~~l~~~l~~-~~~~~~iiiTsR~~~-----~~~-~~~~~~~~~~~~l~~l~~~~~~~l~~ 175 (680)
.-+|||||++-.... . -..+...+.. ...+..|||||+... +.. ..+....--.+.|++.+.+...++++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 357889999653221 1 1233333332 122445888887531 111 11111223568999999999999999
Q ss_pred HHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 176 KCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
+.+........ ++++..|++++.++...|..+..
T Consensus 457 kka~~r~l~l~---~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 457 KKAVQEQLNAP---PEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 98866544433 37778899988887765555443
No 167
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00016 Score=72.85 Aligned_cols=181 Identities=11% Similarity=0.079 Sum_probs=108.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN 85 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (680)
..-+++.+.+.. +.-+....++|+.|+||+++|..+++.. ....-. .....+.....+.+....+++.
T Consensus 9 ~~~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L-lC~~~~------~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 9 PDYEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWL-MCQQPQ------GHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred HHHHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHH-cCCCCC------CCCCCCCCHHHHHHHcCCCCCE
Confidence 344556666643 3446678899999999999999998731 111000 0001112222223322222210
Q ss_pred ------C--CCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhc
Q 042863 86 ------Q--GDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMG 152 (680)
Q Consensus 86 ------~--~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~ 152 (680)
. ....++++.+...... .+.+=++|+|+++.........+...+..-+.++.+|++|.++. +...+.
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0 1234555554333322 34556899999988888787888887877666777777776653 433332
Q ss_pred cCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 153 TRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 153 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
.++..+.+++++++++.+.+....+ .+ .+.+..++..++|.|....
T Consensus 157 --SRCq~~~~~~~~~~~~~~~L~~~~~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 --SRCRLHYLAPPPEQYALTWLSREVT-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred --hccccccCCCCCHHHHHHHHHHccC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 3457789999999999988865321 11 1346788999999997443
No 168
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=3.4e-05 Score=78.02 Aligned_cols=137 Identities=21% Similarity=0.341 Sum_probs=80.0
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
+..|.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 4556888888888888777762 22368888888887777777644 257888888887666666643 556
Q ss_pred EEeccccccccccccCcc-cccceeecccccCcc--cchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCC
Q 042863 483 FEVTTKQKSLQDSGIGCL-VSLRCLIISHCRNLE--YLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 483 L~l~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
|++..+....+ ..+ ++|+.|.+.+++... .++. .-.++|+.|.+++|.... +|..+ ..+|+.|.++.+
T Consensus 117 L~L~~n~~~~L----~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSI----KNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCccc----ccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc-Ccccc--cccCcEEEeccc
Confidence 66654433222 122 356666664332111 1110 112567777777766432 23222 246777777654
No 169
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.03 E-value=6.4e-05 Score=67.45 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=82.4
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh------------------hcCCcEEEEEe
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE------------------EHFELKIWICI 64 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~------------------~~~~~~~~~~~ 64 (680)
|.++..+.+.+.+.. +.-+..+.++|+.|+||+++|..+++..--. ..++.+.|+.-
T Consensus 1 gq~~~~~~L~~~~~~-----~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHC-----TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHc-----CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 677888888888865 2334568999999999999999998741111 12333444432
Q ss_pred CCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEE
Q 042863 65 SEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKIL 139 (680)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~ii 139 (680)
.... .....+++. .+.+.+ .+..=++|+||++.........+...+-.-+..+.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 123344444 333322 2345589999999988888888888888888888888
Q ss_pred EecCchH-HHHhhccCCCCCceeCCCCC
Q 042863 140 VTTRSNK-VASVMGTRGGTTGYNLQGLP 166 (680)
Q Consensus 140 iTsR~~~-~~~~~~~~~~~~~~~l~~l~ 166 (680)
++|.+.. +..... .+...+.+++++
T Consensus 137 L~t~~~~~il~TI~--SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIR--SRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHH--TTSEEEEE----
T ss_pred EEECChHHChHHHH--hhceEEecCCCC
Confidence 8888764 333322 234566666654
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.03 E-value=3.8e-05 Score=67.70 Aligned_cols=89 Identities=22% Similarity=0.111 Sum_probs=49.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc-
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK- 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~- 105 (680)
..+.|+|++|+||||+++.+++ ........+++++............. ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999998 33333234667765543322222111 111112222222333333444444333
Q ss_pred eEEEEEecCCCCCh
Q 042863 106 RYLLVMDDVWNEDP 119 (680)
Q Consensus 106 ~~llvlD~~~~~~~ 119 (680)
..++++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 48999999976443
No 171
>PRK10536 hypothetical protein; Provisional
Probab=98.01 E-value=5.1e-05 Score=71.73 Aligned_cols=127 Identities=15% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC---------cCCHHH
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE---------DFGERQ 72 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 72 (680)
.+|......+..++.. ...|++.|++|.|||+||..++...-....|..++...-.- .-+..+
T Consensus 58 ~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 58 LARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 4577777777777754 23899999999999999999887422234455443332110 001111
Q ss_pred HHHH----HHHHhcCCCCCCcCHHHHHHHHH-----------HHhCCceE---EEEEecCCCCChhHHHHHHHhcCCCCC
Q 042863 73 IMTK----IIKSITGQNQGDLDIEQLQRILR-----------VCLNGKRY---LLVMDDVWNEDPKVWDKLKSLLSGGAK 134 (680)
Q Consensus 73 ~~~~----~~~~l~~~~~~~~~~~~~~~~~~-----------~~l~~~~~---llvlD~~~~~~~~~~~~l~~~l~~~~~ 134 (680)
-+.. +...+..- ...+.....+. ..++++.+ +||+|++++.++ .+...++.+.+.
T Consensus 130 K~~p~~~pi~D~L~~~----~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 130 KFAPYFRPVYDVLVRR----LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHH----hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 1111 11111100 01111111111 13466654 999999988877 445555667777
Q ss_pred CCEEEEecC
Q 042863 135 GSKILVTTR 143 (680)
Q Consensus 135 ~~~iiiTsR 143 (680)
++++|++--
T Consensus 203 ~sk~v~~GD 211 (262)
T PRK10536 203 NVTVIVNGD 211 (262)
T ss_pred CCEEEEeCC
Confidence 899988764
No 172
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.99 E-value=3.9e-05 Score=82.74 Aligned_cols=175 Identities=21% Similarity=0.238 Sum_probs=91.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhh--hhcCC-cEEEE--EeCC-cCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRV--EEHFE-LKIWI--CISE-DFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~~~-~~~~~--~~~~-~~~~~~~~ 74 (680)
++|++..++.+...+.. .....+.|+|++|+|||++|+.+++.... ...|. ...|+ ++.. ..+.+...
T Consensus 67 iiGqs~~i~~l~~al~~------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~ 140 (531)
T TIGR02902 67 IIGQEEGIKALKAALCG------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIA 140 (531)
T ss_pred eeCcHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccc
Confidence 47888889888877643 23457899999999999999988752111 11221 12233 3322 11111111
Q ss_pred HHHHHHhcCCCCC---CcC-HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCC-------------------
Q 042863 75 TKIIKSITGQNQG---DLD-IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSG------------------- 131 (680)
Q Consensus 75 ~~~~~~l~~~~~~---~~~-~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~------------------- 131 (680)
..++.....+... ... ...........-+...-+|++|+++..++.....+...+..
T Consensus 141 ~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~ 220 (531)
T TIGR02902 141 DPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPS 220 (531)
T ss_pred hhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCccccc
Confidence 1111110000000 000 00000000001123456899999988887777666544422
Q ss_pred ---------CCCCCEEEEe-cCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCC
Q 042863 132 ---------GAKGSKILVT-TRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEER 183 (680)
Q Consensus 132 ---------~~~~~~iiiT-sR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 183 (680)
.+..+++|.+ |+++. +.... ..+...+.+++++++|..++++..+.+...
T Consensus 221 ~~~~~~~~~~~~d~rlI~ATt~~p~~L~paL--rsR~~~I~f~pL~~eei~~Il~~~a~k~~i 281 (531)
T TIGR02902 221 HIHDIFQNGLPADFRLIGATTRNPEEIPPAL--RSRCVEIFFRPLLDEEIKEIAKNAAEKIGI 281 (531)
T ss_pred chhhhcccCcccceEEEEEecCCcccCChHH--hhhhheeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 1123466654 44432 11111 123456889999999999999988755443
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.98 E-value=0.00011 Score=79.20 Aligned_cols=164 Identities=13% Similarity=0.162 Sum_probs=87.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..++-+.++|++|+|||++|+.++.. .... |+.++. ........ ......+...+.....
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~~~~~~~---------g~~~~~l~~~f~~a~~ 145 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SDFVEMFV---------GVGASRVRDLFEQAKK 145 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HHHHHHHh---------cccHHHHHHHHHHHHh
Confidence 44567999999999999999999873 2221 222221 11111100 0122233344444445
Q ss_pred CceEEEEEecCCCCC-----------h---hHHHHHHHhcCCC--CCCCEEEEecCchHHHH-hhccCCC-CCceeCCCC
Q 042863 104 GKRYLLVMDDVWNED-----------P---KVWDKLKSLLSGG--AKGSKILVTTRSNKVAS-VMGTRGG-TTGYNLQGL 165 (680)
Q Consensus 104 ~~~~llvlD~~~~~~-----------~---~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~-~~~~~~~-~~~~~l~~l 165 (680)
..+.+|++||++... . .....+...+... ..+..||.||..+.... .....++ ...+.++..
T Consensus 146 ~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~P 225 (495)
T TIGR01241 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLP 225 (495)
T ss_pred cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCC
Confidence 667899999984411 0 0111222222221 23455666666543222 1111111 145889999
Q ss_pred ChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHH
Q 042863 166 PLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLG 211 (680)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~ 211 (680)
+.++..++++........... .....+++.+.| .+..+..++
T Consensus 226 d~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 226 DIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCCHHHHHHHH
Confidence 999999999887744322211 234578888877 445554444
No 174
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.98 E-value=0.00013 Score=82.92 Aligned_cols=135 Identities=22% Similarity=0.268 Sum_probs=78.6
Q ss_pred CCCchhHHHHHHHHHhcCCCC--CCCCc-EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG--ESETV-SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~--~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.+..++.+.+.+.....+ .+..+ .++.++||+|+|||.+|+.++.. .-......+-++++..... ...
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~~~ 641 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----HTV 641 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----hhh
Confidence 479999999999998653211 12223 46889999999999999999873 3222233334443332111 111
Q ss_pred HHHhcCC-CCCCcC-HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCc
Q 042863 78 IKSITGQ-NQGDLD-IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~ 144 (680)
.+-++.+ .....+ ...+...++ +...-+|+||++...++..++.+...+.... ..+.||+||.-
T Consensus 642 ~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 1112211 111111 112222222 2455799999998888888887877776542 45667888764
No 175
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.95 E-value=0.00038 Score=68.16 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=60.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHH--------HHh----cCCCCCCcCHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKII--------KSI----TGQNQGDLDIEQL 94 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l----~~~~~~~~~~~~~ 94 (680)
+.+.+.|++|+|||++|+.+++ .... ..+++++....+...++.... ..+ ..... .....-.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 95 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLED-IVRQNWV 95 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhc-ccceeec
Confidence 3678999999999999999986 3322 245666665444443332210 000 00000 0000000
Q ss_pred HHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC----------------CCCCEEEEecCch
Q 042863 95 QRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG----------------AKGSKILVTTRSN 145 (680)
Q Consensus 95 ~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~----------------~~~~~iiiTsR~~ 145 (680)
...+....+ ....+++|++...+++....+...+... +++.+||+|+...
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 001111112 2358889999887777766666665421 1366788888743
No 176
>PRK08116 hypothetical protein; Validated
Probab=97.94 E-value=8.4e-05 Score=72.61 Aligned_cols=105 Identities=25% Similarity=0.317 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++++|++|+|||.||..+++ ........++|++.. .++..+........ ..+..+ +.+.+.+-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~~~------~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVNFP------QLLNRIKSTYKSSG--KEDENE----IIRSLVNA 179 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH------HHHHHHHHHHhccc--cccHHH----HHHHhcCC
Confidence 35699999999999999999998 443334456677643 34444443332111 111222 22223333
Q ss_pred eEEEEEecCCCCChhHH--HHHHHhcCC-CCCCCEEEEecCch
Q 042863 106 RYLLVMDDVWNEDPKVW--DKLKSLLSG-GAKGSKILVTTRSN 145 (680)
Q Consensus 106 ~~llvlD~~~~~~~~~~--~~l~~~l~~-~~~~~~iiiTsR~~ 145 (680)
-||||||+.......| ..+...+.. ...+..+|+||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999954333233 334444443 23355688888754
No 177
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00013 Score=75.63 Aligned_cols=177 Identities=12% Similarity=0.152 Sum_probs=102.6
Q ss_pred CchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (680)
|-++++.++.+++..-.. -+=..+|=|.+|||+|+|||.||+.++. +.. +.|+.++.. +
T Consensus 194 G~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~-----vPf~~isAp--------e 258 (802)
T KOG0733|consen 194 GLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELG-----VPFLSISAP--------E 258 (802)
T ss_pred ChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcC-----CceEeecch--------h
Confidence 566777777776654210 1114467899999999999999999998 333 335544431 1
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-----------hhHHHHHHHhcCC---C---CCCCEEE
Q 042863 77 IIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-----------PKVWDKLKSLLSG---G---AKGSKIL 139 (680)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-----------~~~~~~l~~~l~~---~---~~~~~ii 139 (680)
++... ...+.+.+.+.+.+.....++++++|+++... .....++...+.. . +.++.||
T Consensus 259 ivSGv-----SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 259 IVSGV-----SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred hhccc-----CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 22222 22234445556666667789999999984421 1122334333332 1 2233333
Q ss_pred E-ecCchHHHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 140 V-TTRSNKVASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 140 i-TsR~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
= |+|...+...++..++. +.|.+.--++.+..++++..+.+-.....-. ..+|+..+-|.
T Consensus 334 gATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 334 GATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred ecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 3 55544444444443433 3577877888888899988886554443322 35677777664
No 178
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.91 E-value=2.8e-05 Score=77.78 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=56.6
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC--CHHHHHHHHHHHhcCCCCCCcC------HHHHHHHHH
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF--GERQIMTKIIKSITGQNQGDLD------IEQLQRILR 99 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~ 99 (680)
-..|+|++|+||||||+++++.... .+|+..+|+.+.... ...++++.+............. ...+.+...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999984332 278889999888766 5556666665333222211111 112222222
Q ss_pred HH-hCCceEEEEEecCCC
Q 042863 100 VC-LNGKRYLLVMDDVWN 116 (680)
Q Consensus 100 ~~-l~~~~~llvlD~~~~ 116 (680)
+. ..+++++|++|+++.
T Consensus 250 ~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 250 RLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHcCCCEEEEEEChHH
Confidence 22 257899999999954
No 179
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.90 E-value=0.00037 Score=68.98 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=83.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-----CHHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-----GERQIMTKIIKSITGQNQGDLDIEQLQRIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (680)
..++.++|||++|.|||.+|+.++. ..... .+-++..+-. ..++.++++.+. .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~---~i~vsa~eL~sk~vGEsEk~IR~~F~~-----------------A 203 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIE---PIVMSAGELESENAGEPGKLIRQRYRE-----------------A 203 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCC---eEEEEHHHhhcCcCCcHHHHHHHHHHH-----------------H
Confidence 5689999999999999999999998 33322 2222221100 111222222211 1
Q ss_pred HHHh--CCceEEEEEecCCCC------ChhH----H--HHHHHhcC--------------CCCCCCEEEEecCchHHHHh
Q 042863 99 RVCL--NGKRYLLVMDDVWNE------DPKV----W--DKLKSLLS--------------GGAKGSKILVTTRSNKVASV 150 (680)
Q Consensus 99 ~~~l--~~~~~llvlD~~~~~------~~~~----~--~~l~~~l~--------------~~~~~~~iiiTsR~~~~~~~ 150 (680)
.+.. ++++++|++|+++.. .... . ..+...+. ....+..||.||.++.....
T Consensus 204 ~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred HHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCH
Confidence 1111 457899999998431 1001 1 12332221 12345667888876653222
Q ss_pred -hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 151 -MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 151 -~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
+...++... .+..-+.++-.++++....+.+.. .....+|++...|-|+
T Consensus 284 ALlRpGRfDk-~i~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 284 PLIRDGRMEK-FYWAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPL 333 (413)
T ss_pred hHcCCCCCCc-eeCCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCc
Confidence 222122222 234456778888888777554332 2456788888888876
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.88 E-value=0.00025 Score=80.97 Aligned_cols=136 Identities=20% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCCchhHHHHHHHHHhcCCCC--CCCCc-EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG--ESETV-SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~--~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.+..++.+...+.....+ .+..+ .++.++|++|+|||++|+.++.. .-......+.++++.... . ..
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~----~~ 642 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K----HS 642 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----hh
Confidence 468999999999988753211 11222 47889999999999999999873 222223355666654321 1 11
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhC-CceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 78 IKSITGQNQGDLDIEQLQRILRVCLN-GKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
...+.+..+.-...+. ...+.+..+ ...-+|+||++...++..+..+...+... -+.+.||+||..
T Consensus 643 ~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 643 VSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 2222221111111111 112222222 23369999999888888888777766532 123447778875
No 181
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00089 Score=66.61 Aligned_cols=177 Identities=12% Similarity=0.104 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-
Q 042863 7 DREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN- 85 (680)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 85 (680)
.-+.+.+.+.. +.-+....++|+.|+||+++|+.+++.. ...... ....+.....+.+...-+++.
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~l-lC~~~~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRAL-LCQNYQ-------SEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHH-cCCCCC-------CCCCCCCHHHHHHHcCCCCCEE
Confidence 34555666643 3445678899999999999999998731 111100 001111222222322222211
Q ss_pred -------CCCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhc
Q 042863 86 -------QGDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMG 152 (680)
Q Consensus 86 -------~~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~ 152 (680)
.....++++.. +.+.+ .+..=++|+|+++.........+...+..-+.++.+|++|.++ .+...+.
T Consensus 78 ~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 11234455543 23332 2334588999998888888888888777766677777666654 3433333
Q ss_pred cCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 153 TRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 153 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
.++..+.+++++++++.+.+.... .. .+..++..++|.|.....+
T Consensus 157 --SRCq~~~~~~~~~~~~~~~L~~~~----~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 --SRCQQWVVTPPSTAQAMQWLKGQG----IT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --hcceeEeCCCCCHHHHHHHHHHcC----Cc-------hHHHHHHHcCCCHHHHHHH
Confidence 356789999999999999887632 11 1246788999999966544
No 182
>PRK04132 replication factor C small subunit; Provisional
Probab=97.88 E-value=0.00035 Score=77.94 Aligned_cols=155 Identities=11% Similarity=0.053 Sum_probs=103.4
Q ss_pred Ec--CCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEE
Q 042863 32 VG--IGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYL 108 (680)
Q Consensus 32 ~G--~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l 108 (680)
.| |.++||||+|+.+++.. ..+.+ ..++.++++...... ..++++..+....+. -..+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEE
Confidence 47 89999999999999842 12222 236677777644443 344444333211100 0123479
Q ss_pred EEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCc
Q 042863 109 LVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHP 187 (680)
Q Consensus 109 lvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~ 187 (680)
+|+|+++..+....+.+...+...+..+++|+++.+.. +.... ..++..+.++++++++....+.+.+...+...+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI--rSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~- 710 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI--QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT- 710 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH--hhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC-
Confidence 99999999888888888888887666777877776653 22222 245678999999999999989887755443322
Q ss_pred hHHHHHHHHHHhhCCChhHH
Q 042863 188 NLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 188 ~~~~~~~~i~~~~~g~Pl~l 207 (680)
++.+..|++.++|.+...
T Consensus 711 --~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 711 --EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred --HHHHHHHHHHcCCCHHHH
Confidence 356789999999988643
No 183
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.88 E-value=1.8e-05 Score=69.20 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=67.1
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
||+...++++.+.+...+ .....|.|+|++|+||+++|+.++.... ......+-+++.... .
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~--~~~~~~~~~~~~~~~------~------ 62 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSG--RANGPFIVIDCASLP------A------ 62 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTT--TCCS-CCCCCHHCTC------H------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcC--ccCCCeEEechhhCc------H------
Confidence 688889999999988754 3445789999999999999987776321 111111111121111 1
Q ss_pred cCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-CCCCEEEEecCch
Q 042863 82 TGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-AKGSKILVTTRSN 145 (680)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~ 145 (680)
+.+.+ .+.-.++++|++..+......+..++... ....|+|.||+.+
T Consensus 63 --------------~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 63 --------------ELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11111 24456779999888877777787777643 5578999998754
No 184
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.88 E-value=3.9e-06 Score=91.15 Aligned_cols=241 Identities=20% Similarity=0.220 Sum_probs=110.7
Q ss_pred HhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCC-Cc-ccc----cccccCcCCcceeccccccCCCcc-C
Q 042863 375 FLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGS-AI-EAL----PKEIGNLKHMRYLDLSRNYKIKKL-P 447 (680)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~-~~~----~~~~~~l~~L~~L~l~~~~~~~~~-~ 447 (680)
....+++|+.+.+..+.. ............+++|+.|+++++ .. ... ......+++|+.|++++|...+.. -
T Consensus 183 l~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHhhCchhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 333456666666655421 122223344556666666666652 11 111 122334566666666665432211 1
Q ss_pred hhh-cCCCCCcEEecCCccccc--cCcccccccCcccEEEecccccccc---ccccCcccccceeecccccCcccchhhc
Q 042863 448 NAI-CELQSLQTLNLEECLELE--ELPKDIRYLVSLRVFEVTTKQKSLQ---DSGIGCLVSLRCLIISHCRNLEYLFDDI 521 (680)
Q Consensus 448 ~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 521 (680)
..+ ..|++|+.|.+.+|..++ .+-.....+++|++|+++.|..... .....++++|+.|.+..+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------- 333 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------- 333 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------
Confidence 111 235566666655554211 1222234455556665555443211 11122233333333222211
Q ss_pred cCCcccceeecccccCc---ccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCc
Q 042863 522 DQLRVLRSLLIAGCPCL---ISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLL 598 (680)
Q Consensus 522 ~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 598 (680)
++.++.+.+.++... ......+.+|++|+.+.+..|. .... .. .+.+.+|+.++
T Consensus 334 --c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~---------~~-----------~~~l~gc~~l~ 390 (482)
T KOG1947|consen 334 --CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL---------GL-----------ELSLRGCPNLT 390 (482)
T ss_pred --CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc---------ch-----------HHHhcCCcccc
Confidence 233333333332221 1112234566677777666664 2200 11 34445555442
Q ss_pred -ccchhhhhhhcccCCccceeeeccCCCCCCCC-----cCCCCCCeEEEcCCcccccccC
Q 042863 599 -ELPQWLLQESLRNFQALEGLVIGNCPKLLSLP-----EDMLHLKTLRIRGCPALSDRCK 652 (680)
Q Consensus 599 -~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~-----~~~~~L~~l~l~~c~~l~~~~~ 652 (680)
.+.. ....+.+++.|+++.|...+.-. ..+.++..+.+.+|+.+.....
T Consensus 391 ~~l~~-----~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 391 ESLEL-----RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hHHHH-----HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 1111 12234448999999987755321 1267888899999988776543
No 185
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.88 E-value=6.5e-05 Score=69.11 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=63.6
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC---------CHH--
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF---------GER-- 71 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-- 71 (680)
.+..+.....+.+.. ...|++.|++|.|||.||.+.+...-....|+.++++.-.-.. +..
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 345555566666653 2489999999999999998888754445678877777421100 000
Q ss_pred -----HHHHHHHHHhcCCCCCCcCHHHHHHHH------HHHhCCc---eEEEEEecCCCCChhHHHHHHHhcCCCCCCCE
Q 042863 72 -----QIMTKIIKSITGQNQGDLDIEQLQRIL------RVCLNGK---RYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSK 137 (680)
Q Consensus 72 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~l~~~---~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~ 137 (680)
.-+.+.+..+. .....+...+.- -..++++ ..+||+|++++..+ .++...+.+.+.+|+
T Consensus 76 ~~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~sk 148 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSK 148 (205)
T ss_dssp --TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-E
T ss_pred HHHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcE
Confidence 11112222221 111222211100 0123555 36999999999877 455555777788999
Q ss_pred EEEecCc
Q 042863 138 ILVTTRS 144 (680)
Q Consensus 138 iiiTsR~ 144 (680)
+|++--.
T Consensus 149 ii~~GD~ 155 (205)
T PF02562_consen 149 IIITGDP 155 (205)
T ss_dssp EEEEE--
T ss_pred EEEecCc
Confidence 9987643
No 186
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.87 E-value=3e-06 Score=92.01 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=43.8
Q ss_pred hHHHhhhcCCccEEEEecC-C-cccchHHHHHhhccCcceeEEEeCCCC-cccc-ccc-ccCcCCcceeccccccCCC--
Q 042863 372 FSRFLSDLGRVRTIFFSIN-D-EKVSQSFVRSCISKSQFLRVLNLSGSA-IEAL-PKE-IGNLKHMRYLDLSRNYKIK-- 444 (680)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~-~-~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~-~~~-~~~l~~L~~L~l~~~~~~~-- 444 (680)
+......++.|+.|.++++ . ..............+++|+.|+++++. ++.. ... ...|++|+.|.+..|..++
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 3444555666666666541 1 111111122234455666666666655 3311 111 2235666666655554221
Q ss_pred ccChhhcCCCCCcEEecCCcccc
Q 042863 445 KLPNAICELQSLQTLNLEECLEL 467 (680)
Q Consensus 445 ~~~~~~~~l~~L~~L~l~~~~~~ 467 (680)
.+-.....++.|++|++++|...
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHHHhcCcccEEeeecCccc
Confidence 12222344566666666655443
No 187
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.86 E-value=5.7e-05 Score=78.06 Aligned_cols=152 Identities=13% Similarity=0.231 Sum_probs=84.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH-HH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI-IK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (680)
|+||++.++.+...+... ..|.+.|++|+|||++|+.++........|. +..+.-. ++.+++..+ +.
T Consensus 22 i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~---~~~~~ft-tp~DLfG~l~i~ 89 (498)
T PRK13531 22 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNARAFE---YLMTRFS-TPEEVFGPLSIQ 89 (498)
T ss_pred ccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHhcccCcce---eeeeeec-CcHHhcCcHHHh
Confidence 689999999999998762 2699999999999999999987322222222 2222110 122211111 11
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHhCC---ceEEEEEecCCCCChhHHHHHHHhcCCC---------CCCCEEEEecCchHH
Q 042863 80 SITGQNQGDLDIEQLQRILRVCLNG---KRYLLVMDDVWNEDPKVWDKLKSLLSGG---------AKGSKILVTTRSNKV 147 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~---~~~llvlD~~~~~~~~~~~~l~~~l~~~---------~~~~~iiiTsR~~~~ 147 (680)
.... . ..+.+...+ ..-++++|+++...+.....+...+... ..+.++++++.++..
T Consensus 90 ~~~~----~-------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP 158 (498)
T PRK13531 90 ALKD----E-------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP 158 (498)
T ss_pred hhhh----c-------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc
Confidence 1000 0 001111111 1128999999998888888777776321 123345554445422
Q ss_pred H------HhhccCCCCCceeCCCCChhh-HHHHHHHH
Q 042863 148 A------SVMGTRGGTTGYNLQGLPLED-CLSLFMKC 177 (680)
Q Consensus 148 ~------~~~~~~~~~~~~~l~~l~~~~-~~~l~~~~ 177 (680)
. ...... .-.+.++++++++ -.+++...
T Consensus 159 E~g~~leAL~DRF--liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRM--LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhE--EEEEECCCCCchHHHHHHHHcc
Confidence 1 111111 1347899998644 47777664
No 188
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.86 E-value=0.00086 Score=68.50 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=94.8
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc---CCcEEEEEeCCcCC----HHHHHHH
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH---FELKIWICISEDFG----ERQIMTK 76 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 76 (680)
|+.-.+.+.+.+... ....+.+|+|.|+=|+|||++.+++.+ ..... -..+++++.-...+ ...++..
T Consensus 1 ~~~~a~~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~ 75 (325)
T PF07693_consen 1 RKPYAKALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEE 75 (325)
T ss_pred ChHHHHHHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccccCCCcchHHHHHHHH
Confidence 445566777777662 236788999999999999999999987 44333 22344554433333 2233444
Q ss_pred HHHHhcCCCC------------------------------------------------------------------CCcC
Q 042863 77 IIKSITGQNQ------------------------------------------------------------------GDLD 90 (680)
Q Consensus 77 ~~~~l~~~~~------------------------------------------------------------------~~~~ 90 (680)
+..++..... ...+
T Consensus 76 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (325)
T PF07693_consen 76 LFDQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKE 155 (325)
T ss_pred HHHHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHH
Confidence 4333321100 0001
Q ss_pred HHHHHHHHHHHh--CCceEEEEEecCCCCChhHHHHHHHhcCC--CCCCCEEEEecCchHHHHhhccCCC----------
Q 042863 91 IEQLQRILRVCL--NGKRYLLVMDDVWNEDPKVWDKLKSLLSG--GAKGSKILVTTRSNKVASVMGTRGG---------- 156 (680)
Q Consensus 91 ~~~~~~~~~~~l--~~~~~llvlD~~~~~~~~~~~~l~~~l~~--~~~~~~iiiTsR~~~~~~~~~~~~~---------- 156 (680)
.++....+.+.+ .+++.+||+||++.-++.....+...+.. ..+++.+|+..-...+........+
T Consensus 156 ~~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 156 VEELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred HHHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHH
Confidence 111223333334 35789999999988666655554444332 1257767776665555444432211
Q ss_pred ------CCceeCCCCChhhHHHHHHHH
Q 042863 157 ------TTGYNLQGLPLEDCLSLFMKC 177 (680)
Q Consensus 157 ------~~~~~l~~l~~~~~~~l~~~~ 177 (680)
..++.+|+.+..+...++...
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 123667777777766666665
No 189
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=1.3e-05 Score=75.31 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccc-cCcCCcceeccccccCC-CccChhh
Q 042863 373 SRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEI-GNLKHMRYLDLSRNYKI-KKLPNAI 450 (680)
Q Consensus 373 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~-~~~~~~~ 450 (680)
..+-..+++++.+++.+|.. .....+...+.++|.|++|+|+.|.+......+ ....+|+.|-|.+.... ......+
T Consensus 64 ~~~~~~~~~v~elDL~~N~i-SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLI-SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHHHhhhhhhhhcccchh-ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 33444566677777766643 233444455666777777777777665332222 24556666666655332 1223334
Q ss_pred cCCCCCcEEecCCc
Q 042863 451 CELQSLQTLNLEEC 464 (680)
Q Consensus 451 ~~l~~L~~L~l~~~ 464 (680)
..+|++++|.++.|
T Consensus 143 ~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 143 DDLPKVTELHMSDN 156 (418)
T ss_pred hcchhhhhhhhccc
Confidence 45666666666655
No 190
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.83 E-value=0.00074 Score=61.99 Aligned_cols=103 Identities=22% Similarity=0.359 Sum_probs=65.7
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|-+.+.+.+.+.-..+. .+...-.|.++|.-|.|||+|++++.+ .+.+.+...+-|+=.+-.+...
T Consensus 63 ~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl~~Lp~--------- 129 (287)
T COG2607 63 VGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDLATLPD--------- 129 (287)
T ss_pred hCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHHhhHHH---------
Confidence 577777777777666544 223345799999999999999999998 6666554444443221111111
Q ss_pred cCCCCCCcCHHHHHHHHHHHhCCceEEEEEecC-CCCChhHHHHHHHhcCC
Q 042863 82 TGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDV-WNEDPKVWDKLKSLLSG 131 (680)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~-~~~~~~~~~~l~~~l~~ 131 (680)
+.+.++ .+..+++|+.||+ .+.+...+..+...+..
T Consensus 130 ------------l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 130 ------------LVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ------------HHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 111121 1467899999998 34455677777777764
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.83 E-value=8e-05 Score=76.31 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=65.9
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
++.+..++.+...+.. .+.+.++|++|+|||++|+++++.......+..+.|+.+....+....+. ..
T Consensus 178 ~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~----G~ 245 (459)
T PRK11331 178 FIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ----GY 245 (459)
T ss_pred cCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc----cc
Confidence 4567777888887754 23788999999999999999998433334566777888876655444332 22
Q ss_pred cCCCCC-CcCHHHHHHHHHHHhC--CceEEEEEecCCCCChhH
Q 042863 82 TGQNQG-DLDIEQLQRILRVCLN--GKRYLLVMDDVWNEDPKV 121 (680)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~~~l~--~~~~llvlD~~~~~~~~~ 121 (680)
.+.... ......+.+.+....+ ++++++|+|++...+...
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k 288 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK 288 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH
Confidence 111100 0001122223333322 357999999997666544
No 192
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.82 E-value=0.00015 Score=82.39 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=85.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|.++..+++.+++...........+++.++|++|+|||++|+.++. .....| +-+++....+...+..
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~---~~i~~~~~~~~~~i~g----- 391 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF---VRFSLGGVRDEAEIRG----- 391 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe---EEEeCCCcccHHHHcC-----
Confidence 368888888888866432111122335799999999999999999998 333332 2233332222221110
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChh----HHHHHHHhcCC---------C------CCCCEEEEe
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPK----VWDKLKSLLSG---------G------AKGSKILVT 141 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~----~~~~l~~~l~~---------~------~~~~~iiiT 141 (680)
............+.+.+.+.. ..+.+|++|+++..... ....+...+.. . ..+..+|.|
T Consensus 392 -~~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~T 469 (775)
T TIGR00763 392 -HRRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIAT 469 (775)
T ss_pred -CCCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEe
Confidence 001111111223333343332 23348899998554321 11223332221 1 123444555
Q ss_pred cCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 142 TRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
|..... -......+...+++++++.++-.+++++..
T Consensus 470 tN~~~~-i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 470 ANSIDT-IPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred cCCchh-CCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 544321 111112344678999999999888887654
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.6e-05 Score=80.93 Aligned_cols=135 Identities=21% Similarity=0.370 Sum_probs=83.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCC---CCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGE---SETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.+.+++.+.+.+.....+- .....+....||.|+|||.||++++.. .-+.=...+-++.++... -+.+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E----kHsV 566 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME----KHSV 566 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH----HHHH
Confidence 4799999999999998654322 222346666899999999999999972 221113455555554321 1122
Q ss_pred HHHhcC-CCCCCcCHHHHHHHHHHHhCCceE-EEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCc
Q 042863 78 IKSITG-QNQGDLDIEQLQRILRVCLNGKRY-LLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~-llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~ 144 (680)
.+-+|. ++.-.++ + ...+.+..+.+++ +|+||++.-+++..++.+...+.+.. +.+.||+||.-
T Consensus 567 SrLIGaPPGYVGye--e-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 567 SRLIGAPPGYVGYE--E-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred HHHhCCCCCCceec--c-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 233332 2222222 1 3344455556665 99999998889988888888877541 34446667753
No 194
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00028 Score=72.07 Aligned_cols=145 Identities=10% Similarity=0.115 Sum_probs=87.4
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-------------------cCCcEEEE
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-------------------HFELKIWI 62 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~~~~~~~ 62 (680)
+|-+....++..+.... +..+..+.++||+|+||||+|..+++...-.. .++.+..+
T Consensus 4 ~~~~~~~~~l~~~~~~~----~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 4 VPWQEAVKRLLVQALES----GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred ccchhHHHHHHHHHHhc----CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 56677788888888642 23344699999999999999999988422111 22445555
Q ss_pred EeCCcCC---HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEE
Q 042863 63 CISEDFG---ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKIL 139 (680)
Q Consensus 63 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~ii 139 (680)
+.+.... ..+..+++.+....... .+..-++|+|+++.........+...+...+....+|
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 5444333 22333333333211111 2456799999997777666666777777777777888
Q ss_pred EecCchH-HHHhhccCCCCCceeCCCCChh
Q 042863 140 VTTRSNK-VASVMGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 140 iTsR~~~-~~~~~~~~~~~~~~~l~~l~~~ 168 (680)
+++..+. +... ...++..+.+++.+..
T Consensus 144 l~~n~~~~il~t--I~SRc~~i~f~~~~~~ 171 (325)
T COG0470 144 LITNDPSKILPT--IRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEcCChhhccch--hhhcceeeecCCchHH
Confidence 8887442 2221 2234566777773333
No 195
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.81 E-value=0.00081 Score=62.32 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=97.2
Q ss_pred CCchhHH---HHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHH
Q 042863 2 IGRDKDR---EKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKII 78 (680)
Q Consensus 2 vgR~~~~---~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (680)
+|.+++. .-|.+.|..+..-+++-++.|..||++|.|||.+|+.+++. ... .++.+.. .+++.+.+
T Consensus 124 iGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kv-----p~l~vka----t~liGehV 192 (368)
T COG1223 124 IGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKV-----PLLLVKA----TELIGEHV 192 (368)
T ss_pred hchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCC-----ceEEech----HHHHHHHh
Confidence 5655544 44667777655556788999999999999999999999983 222 2332221 11111111
Q ss_pred HHhcCCCCCCcCHHHHHHH-HHHHhCCceEEEEEecCCCC------------ChhHHHHHHHhcCC--CCCCCEEEEecC
Q 042863 79 KSITGQNQGDLDIEQLQRI-LRVCLNGKRYLLVMDDVWNE------------DPKVWDKLKSLLSG--GAKGSKILVTTR 143 (680)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlD~~~~~------------~~~~~~~l~~~l~~--~~~~~~iiiTsR 143 (680)
. +....... ..+.-+.-++++++|+++.. -.+....+..-+.. .+.|.-.|-+|.
T Consensus 193 G----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 193 G----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred h----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 1 11111112 22222456899999987321 11222334333443 234655566666
Q ss_pred chHHHHh-hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 144 SNKVASV-MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 144 ~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
++.+... .+.+. ...|+..--+++|..++++..+..-..+-... .+.++.+++|.
T Consensus 263 ~p~~LD~aiRsRF-EeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 263 RPELLDPAIRSRF-EEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred ChhhcCHHHHhhh-hheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 5543322 22211 13466666788899999998885543332221 45677777664
No 196
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00031 Score=70.55 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=82.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC---------------CCC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN---------------QGD 88 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~ 88 (680)
.-+..+.++|+.|+|||++|+.+++..- ...-.. .....+.....+.+...-+++. ...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~ll-C~~~~~-----~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~ 92 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALL-CETPAP-----GHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQ 92 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHc-CCCCCC-----CCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCC
Confidence 3456788999999999999999987411 100000 0000111111122211111110 011
Q ss_pred cCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccCCCCCceeCC
Q 042863 89 LDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTRGGTTGYNLQ 163 (680)
Q Consensus 89 ~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~~~~~~~~l~ 163 (680)
..++++........ .+++-++|+|+++..+......+...+.....+..+|++|.+.. +...+. .++..+.++
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~--SRc~~~~~~ 170 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK--SRCRKMVLP 170 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH--HHhhhhcCC
Confidence 34555554333221 23344556799988888877777777766555666777777654 332222 345778999
Q ss_pred CCChhhHHHHHHHH
Q 042863 164 GLPLEDCLSLFMKC 177 (680)
Q Consensus 164 ~l~~~~~~~l~~~~ 177 (680)
+++.+++.+.+...
T Consensus 171 ~~~~~~~~~~L~~~ 184 (325)
T PRK08699 171 APSHEEALAYLRER 184 (325)
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999888653
No 197
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.79 E-value=0.00033 Score=79.08 Aligned_cols=132 Identities=15% Similarity=0.289 Sum_probs=77.4
Q ss_pred CCCchhHHHHHHHHHhcCCCC--CCCCc-EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG--ESETV-SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~--~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.++.++.+.+.+.....+ .+..+ .++.++||+|+|||++|+.++. .. +...+.++++...... .+
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~----~~ 526 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH----TV 526 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc----cH
Confidence 478899999999888753211 11223 3578899999999999999988 33 2335566655432211 11
Q ss_pred HHHhcCC-CCCCcCHHHHHHHHHHHhC-CceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 78 IKSITGQ-NQGDLDIEQLQRILRVCLN-GKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~-~~~~~~~~~~~~~~~~~l~-~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
.+-++.. .....+. ...+.+.++ ...-+|+||+++..++..++.+...+... -+.+.||+||.-
T Consensus 527 ~~lig~~~gyvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred HHHhcCCCCCcccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 1112211 1111111 112223332 34569999999888888888887776642 124547777754
No 198
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.78 E-value=0.00015 Score=67.66 Aligned_cols=183 Identities=12% Similarity=0.132 Sum_probs=100.3
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-----cCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHH
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-----HFELKIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQR 96 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 96 (680)
.++.+...+|||+|.||-|.+..+.+.. ++. +.+..-|.+.+... .+..+-...--++.+.+....|...+++
T Consensus 31 ~~d~PHll~yGPSGaGKKTrimclL~el-YG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQe 109 (351)
T KOG2035|consen 31 TGDFPHLLVYGPSGAGKKTRIMCLLREL-YGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQE 109 (351)
T ss_pred cCCCCeEEEECCCCCCchhhHHHHHHHH-hCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHH
Confidence 3567899999999999999998877631 110 11222333322210 0000000000001111112223333333
Q ss_pred HHHHHh--------CCceE-EEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCCCCCceeCCCCC
Q 042863 97 ILRVCL--------NGKRY-LLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRGGTTGYNLQGLP 166 (680)
Q Consensus 97 ~~~~~l--------~~~~~-llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~~~~~~~l~~l~ 166 (680)
.+++.. ..+.+ ++|+-.++.-..+....++.-+......+|+|+...+- .+-+..+ .+.-.+.++..+
T Consensus 110 llKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIr--SRCl~iRvpaps 187 (351)
T KOG2035|consen 110 LLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIR--SRCLFIRVPAPS 187 (351)
T ss_pred HHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHh--hheeEEeCCCCC
Confidence 333322 12333 56666664444444455666666667788887744322 1222222 234568999999
Q ss_pred hhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 167 LEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
++|....+.+...+++.... .+.+.+|+++++|+-.-.-.+.
T Consensus 188 ~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 188 DEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred HHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999877765543 4778999999999876333333
No 199
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=2.4e-05 Score=86.11 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=97.9
Q ss_pred CceeEEEEeccCcchhhhHHHhh-hcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLS-DLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMR 433 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~ 433 (680)
.+++++.+.|.......|+.-.+ -+|.|++|.+++-. +....+.....++|+|..||+++++++.+ ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce--ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 46888899888877777765444 57999999998843 34444666788999999999999999977 5688999999
Q ss_pred eeccccccCCC-ccChhhcCCCCCcEEecCCccccccC--cc----cccccCcccEEEeccccccc
Q 042863 434 YLDLSRNYKIK-KLPNAICELQSLQTLNLEECLELEEL--PK----DIRYLVSLRVFEVTTKQKSL 492 (680)
Q Consensus 434 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~~----~~~~l~~L~~L~l~~~~~~~ 492 (680)
.|.+.+=.+.. ..-..+..+++|++||++........ .. --..+++|+.|+++++.+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99998643332 22234678999999999975433221 11 11347788888888776553
No 200
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.78 E-value=5.4e-05 Score=76.24 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=59.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCc--CCHHHHHHHHHHHhcCCCCCCcC------HHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISED--FGERQIMTKIIKSITGQNQGDLD------IEQLQRI 97 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~ 97 (680)
..++|+|++|+|||||++.+++. +.. +|+..+|+.+... .++.++++.+...+......... ...+.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~--I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQA--ITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHh--hcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 35889999999999999999984 333 5888889987765 67778888886554432222111 1122222
Q ss_pred HHHH-hCCceEEEEEecCCCC
Q 042863 98 LRVC-LNGKRYLLVMDDVWNE 117 (680)
Q Consensus 98 ~~~~-l~~~~~llvlD~~~~~ 117 (680)
..+. ..+++++|++|+++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 2578999999999653
No 201
>PRK12377 putative replication protein; Provisional
Probab=97.77 E-value=7.6e-05 Score=71.45 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=57.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++++|++|+|||.||..+++ ........+.|++.. +++..+-..... ...... .+.. + .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~---~l~~-l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK---FLQE-L-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH---HHHH-h-cC
Confidence 35799999999999999999998 444444456777553 333333332211 111111 1222 1 34
Q ss_pred eEEEEEecCCCCChh--HHHHHHHhcCCC-CCCCEEEEecCch
Q 042863 106 RYLLVMDDVWNEDPK--VWDKLKSLLSGG-AKGSKILVTTRSN 145 (680)
Q Consensus 106 ~~llvlD~~~~~~~~--~~~~l~~~l~~~-~~~~~iiiTsR~~ 145 (680)
.-|||+||+...... ..+.+...+... ...--+||||.-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 569999999443222 333444444432 2223377887643
No 202
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00063 Score=69.12 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=93.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCC--cEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFE--LKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL 102 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 102 (680)
....++|||+.|.|||-|++++.+ ......+ .+++++. +....+.+..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS------EDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH------HHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 467899999999999999999998 5444443 3555533 2333444443311 1122333433
Q ss_pred CCceEEEEEecCCCCCh--hHHHHHHHhcCC-CCCCCEEEEecCchHHHH------hhccCCCCCceeCCCCChhhHHHH
Q 042863 103 NGKRYLLVMDDVWNEDP--KVWDKLKSLLSG-GAKGSKILVTTRSNKVAS------VMGTRGGTTGYNLQGLPLEDCLSL 173 (680)
Q Consensus 103 ~~~~~llvlD~~~~~~~--~~~~~l~~~l~~-~~~~~~iiiTsR~~~~~~------~~~~~~~~~~~~l~~l~~~~~~~l 173 (680)
.--++++||++-... .....+...+.. ...|-.||+|++.....- ..+....--.+++.+.+++...++
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 234889999965211 112334444443 122337899887542111 111112225689999999999999
Q ss_pred HHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 174 FMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
+++.+.......++ +++.-|++....+-.-+
T Consensus 253 L~kka~~~~~~i~~---ev~~~la~~~~~nvReL 283 (408)
T COG0593 253 LRKKAEDRGIEIPD---EVLEFLAKRLDRNVREL 283 (408)
T ss_pred HHHHHHhcCCCCCH---HHHHHHHHHhhccHHHH
Confidence 99977665444433 55566666655554433
No 203
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.76 E-value=0.00022 Score=81.84 Aligned_cols=136 Identities=21% Similarity=0.355 Sum_probs=80.2
Q ss_pred CCCchhHHHHHHHHHhcCCCC--CC-CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG--ES-ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~--~~-~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|++..++.+...+.....+ .+ ....++.++|++|+|||++|+.++.. ....-...+.++++....... .
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~----~ 640 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS----V 640 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch----H
Confidence 479999999999999764311 11 12356888999999999999999973 322223455666654332111 1
Q ss_pred HHHhcCC-CCCCcC-HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 78 IKSITGQ-NQGDLD-IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~-~~~~~~-~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
.+-++.+ .....+ ...+...+. +....+|+||++...++..+..+...+... -+.+.||+||.-
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 1112211 111111 122222222 233459999999988888888887777532 134447777764
Q ss_pred h
Q 042863 145 N 145 (680)
Q Consensus 145 ~ 145 (680)
.
T Consensus 718 g 718 (852)
T TIGR03346 718 G 718 (852)
T ss_pred c
Confidence 3
No 204
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00012 Score=76.63 Aligned_cols=193 Identities=15% Similarity=0.218 Sum_probs=118.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
+||.+...+.|...+... .-...-...|+-|+||||+|+-++...--... .....+......+.+-..
T Consensus 18 vvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 18 VVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred hcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcC
Confidence 478888899999988652 22334566899999999999999874211110 001111111222222221
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~ 150 (680)
-..+ ......++++...+.+.. +++.=+.|+|+||-.....+..+.--+-.-+..+.+|+.|.+.. +...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 1000 011123333333333322 34445999999987777777777666666666777777777653 2211
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
. ..+++.+.++.++.++....+...+.++.....+ +....|++..+|...-...+
T Consensus 166 I--lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~---~aL~~ia~~a~Gs~RDalsl 220 (515)
T COG2812 166 I--LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE---DALSLIARAAEGSLRDALSL 220 (515)
T ss_pred h--hhccccccccCCCHHHHHHHHHHHHHhcCCccCH---HHHHHHHHHcCCChhhHHHH
Confidence 1 2356789999999999999999998777665543 66688888888877644333
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00056 Score=68.72 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=71.3
Q ss_pred cCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCCCCCceeCC
Q 042863 89 LDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRGGTTGYNLQ 163 (680)
Q Consensus 89 ~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~~~~~~~l~ 163 (680)
..++++.+.....- .++.=++|+|+++..+......+...+..-+.++.+|++|.++ .+...+. .++..+.++
T Consensus 112 I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~--SRcq~i~~~ 189 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL--SRCRQFPMT 189 (342)
T ss_pred cCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH--hcCEEEEec
Confidence 34555554333321 2344588899999988888888888888766677666666554 3333332 345789999
Q ss_pred CCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 164 GLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
++++++..+.+.... . .+ ...++..++|.|.....+
T Consensus 190 ~~~~~~~~~~L~~~~----~--~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 190 VPAPEAAAAWLAAQG----V--AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred CCCHHHHHHHHHHcC----C--Ch-----HHHHHHHcCCCHHHHHHH
Confidence 999999999887642 1 11 123577889999755444
No 206
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.75 E-value=0.00044 Score=73.39 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=93.6
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL 102 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 102 (680)
....++..++|++|+||||||+-+|+. ..| .++-|+++...+...+-..+...+....... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 355689999999999999999999873 223 4778888887777776666665553221110 1
Q ss_pred CCceEEEEEecCCCCChhHHHHHHHhcCCC-----CC-C--------------CEEEEecCchHHHHhhc-cCCCCCcee
Q 042863 103 NGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----AK-G--------------SKILVTTRSNKVASVMG-TRGGTTGYN 161 (680)
Q Consensus 103 ~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----~~-~--------------~~iiiTsR~~~~~~~~~-~~~~~~~~~ 161 (680)
..++.-+|+|+++.......+.+...+... +. + +|=||.-.|...+..++ ..+....+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIA 464 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEE
Confidence 256778899999777655556665555421 10 1 12233322322222222 222234455
Q ss_pred CCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhH
Q 042863 162 LQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLA 206 (680)
Q Consensus 162 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~ 206 (680)
+.+-++.-..+=++.....++...++ .....+++.|.+--..
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE~mr~d~---~aL~~L~el~~~DIRs 506 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRENMRADS---KALNALCELTQNDIRS 506 (877)
T ss_pred ecCCChhHHHHHHHHHHhhhcCCCCH---HHHHHHHHHhcchHHH
Confidence 55555555445455555444444443 3446777777665443
No 207
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=5.3e-06 Score=87.43 Aligned_cols=107 Identities=27% Similarity=0.352 Sum_probs=65.5
Q ss_pred hhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCccc
Q 042863 402 CISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLR 481 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 481 (680)
.+..+.+|+.|++.+|.+..+...+..+++|++|++++|. ++.+.. +..++.|+.|++.+|.+. .+ ..+..+.+|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNLIS-DI-SGLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCcch-hc-cCCccchhhh
Confidence 3566777777777777777665546667777777777763 333333 455666777777776432 22 2344466677
Q ss_pred EEEeccccccccccc-cCcccccceeeccccc
Q 042863 482 VFEVTTKQKSLQDSG-IGCLVSLRCLIISHCR 512 (680)
Q Consensus 482 ~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 512 (680)
.+++++|.+...... +..+.+++.+.+.+|.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 777777766665332 3556666666666654
No 208
>PRK08181 transposase; Validated
Probab=97.72 E-value=0.00023 Score=69.14 Aligned_cols=100 Identities=22% Similarity=0.209 Sum_probs=56.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
..++++|++|+|||.||..+++ ........+.|++. .+++..+.... .....+.....+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~-----~~~~~~~~l~~l-----~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVAR-----RELQLESAIAKL-----DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHH-----hCCcHHHHHHHH-----hcC
Confidence 4699999999999999999987 44333345667754 23444443221 112222222222 233
Q ss_pred EEEEEecCCCCChhH--HHHHHHhcCCC-CCCCEEEEecCch
Q 042863 107 YLLVMDDVWNEDPKV--WDKLKSLLSGG-AKGSKILVTTRSN 145 (680)
Q Consensus 107 ~llvlD~~~~~~~~~--~~~l~~~l~~~-~~~~~iiiTsR~~ 145 (680)
-|||+||+....... ...+...+... ..+ .+||||..+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 599999996532222 23344555432 223 488888755
No 209
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00034 Score=78.04 Aligned_cols=132 Identities=20% Similarity=0.325 Sum_probs=76.8
Q ss_pred CCCchhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG---ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.++.++.+.+.+.....+ .......+.++||+|+|||++|+.++. ... ...+.++++....... +
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~---~~~i~id~se~~~~~~----~ 530 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT----V 530 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhC---CCcEEeechhhccccc----H
Confidence 478999999999998743211 112234789999999999999999987 332 2344555554322111 1
Q ss_pred HHHhcCC-CCCCcCHHHHHHHHHHHhC-CceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 78 IKSITGQ-NQGDLDIEQLQRILRVCLN-GKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~-~~~~~~~~~~~~~~~~~l~-~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
.+-++.+ .....+. ...+.+.++ ....+|+||++...++..++.+...+... -+++.||+||..
T Consensus 531 ~~LiG~~~gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 531 SRLIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred HHHcCCCCCcccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 1112221 1111111 112222222 34579999999888887777777766532 134547777753
No 210
>PRK04296 thymidine kinase; Provisional
Probab=97.70 E-value=0.00013 Score=67.58 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=63.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQG--DLDIEQLQRILRVCLNG 104 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~ 104 (680)
.++.++|+.|.||||+|..++. +.......++++.- ..+.+.....++..++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999999988 44343334444421 112222223344444422111 1234445555544 333
Q ss_pred ceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 105 KRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 105 ~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
..-+||+|+++-.+.+....+...+ ...+..|++|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4569999999765443333333332 234777999988753
No 211
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.69 E-value=0.00073 Score=76.62 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=97.4
Q ss_pred CCchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|.++..+.+.+.+.-+.. -+-..++-+.++|++|+|||++|+.++. ..... |+.+... .
T Consensus 456 ~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~-----fi~v~~~----~-- 522 (733)
T TIGR01243 456 GGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGAN-----FIAVRGP----E-- 522 (733)
T ss_pred ccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCC-----EEEEehH----H--
Confidence 3556666666665532110 0123456789999999999999999998 33222 2222210 1
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC--------Ch----hHHHHHHHhcCC--CCCCCEEEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE--------DP----KVWDKLKSLLSG--GAKGSKILV 140 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~--------~~----~~~~~l~~~l~~--~~~~~~iii 140 (680)
++... ...+...+...+....+..+.+|++|+++.. +. ....++...+.. ...+..||.
T Consensus 523 --l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~ 595 (733)
T TIGR01243 523 --ILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIA 595 (733)
T ss_pred --Hhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 11111 1111222333333333466799999998431 00 112233334443 223555666
Q ss_pred ecCchHHHHhhccC-CCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh-hHHHHHH
Q 042863 141 TTRSNKVASVMGTR-GGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP-LAVRTLG 211 (680)
Q Consensus 141 TsR~~~~~~~~~~~-~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~~~ 211 (680)
||..+......-.+ ++. ..+.++..+.++..++|+....+......- ....+++.+.|.- ..+..++
T Consensus 596 aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~----~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 596 ATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV----DLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred eCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHcCCCCHHHHHHHH
Confidence 77665433222221 122 467899999999999998766443322221 2356777777643 4444443
No 212
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.69 E-value=1.4e-05 Score=74.14 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=41.5
Q ss_pred ccCcccEEEecccccccccc-----ccCcccccceeecccccCccc-----chhhccCCcccceeecccccCccc----C
Q 042863 476 YLVSLRVFEVTTKQKSLQDS-----GIGCLVSLRCLIISHCRNLEY-----LFDDIDQLRVLRSLLIAGCPCLIS----L 541 (680)
Q Consensus 476 ~l~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~ 541 (680)
+-+.|+.+.+..|.+...+. .+..-.+|+.+.+..|..-.. +...+..+.+|+.|++..|.++.. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 34456666666665543321 112223566666665542111 112334456677777777665321 1
Q ss_pred CccCCCCCCcCeEeecCCC
Q 042863 542 PPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 542 ~~~~~~~~~L~~L~l~~~~ 560 (680)
...+...+.|++|.+.+|-
T Consensus 235 a~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 235 ADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHhcccchhhhccccchh
Confidence 1222333456777776663
No 213
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.69 E-value=0.00023 Score=71.86 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.+...+ .....|.|.|++|+||+++|+.+.+. -...-...+-++|.... ...+. ..
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~--s~r~~~pfv~vnc~~~~--~~~l~---~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYL--SKRWQGPLVKLNCAALS--ENLLD---SE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHh--cCccCCCeEEEeCCCCC--hHHHH---HH
Confidence 5899999999999988754 33457899999999999999988762 11122234456665432 12222 12
Q ss_pred hcCCCCCCc--CHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCchHH
Q 042863 81 ITGQNQGDL--DIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~--~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~~ 147 (680)
++....... ........+. ....-.|+||+++.........+..++... ..+++||.||.....
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~ 146 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLP 146 (329)
T ss_pred HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHH
Confidence 221111000 0000000111 123456899999887777767777666432 134678887754321
Q ss_pred H--------HhhccCCCCCceeCCCCCh--hhHHHHHHH
Q 042863 148 A--------SVMGTRGGTTGYNLQGLPL--EDCLSLFMK 176 (680)
Q Consensus 148 ~--------~~~~~~~~~~~~~l~~l~~--~~~~~l~~~ 176 (680)
. ......-....+.++||.+ +|...|+..
T Consensus 147 ~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~ 185 (329)
T TIGR02974 147 ALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEH 185 (329)
T ss_pred HHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHH
Confidence 0 1111111224578888874 454444433
No 214
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=1.2e-05 Score=84.64 Aligned_cols=110 Identities=25% Similarity=0.275 Sum_probs=64.9
Q ss_pred hhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCC
Q 042863 376 LSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQS 455 (680)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 455 (680)
+..++.|..|++..|...... ..+..+++|++|++++|.|+.+. .+..++.|+.|++++|. +..++. +..++.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~----~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE----NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKS 163 (414)
T ss_pred cccccceeeeeccccchhhcc----cchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchh
Confidence 445666777777665422111 11556777777777777777553 34556667777777773 333333 444677
Q ss_pred CcEEecCCccccccCccc-ccccCcccEEEecccccccc
Q 042863 456 LQTLNLEECLELEELPKD-IRYLVSLRVFEVTTKQKSLQ 493 (680)
Q Consensus 456 L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~ 493 (680)
|+.+++++|..... ... ...+.+|+.+.+..|.+..+
T Consensus 164 L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhcccCCcchhhhh-hhhhhhhccchHHHhccCCchhcc
Confidence 77777777654432 221 45666677777776665544
No 215
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.66 E-value=0.00013 Score=65.64 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=72.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|....++++.+.+...+ .....|.|+|+.|.||+.+|+.+.+. -.+.-...+-++|+.. +.+.+. .+
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~-~~~~~e----~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAAL-PEELLE----SE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTTS--HHHHH----HH
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhhh-hcchhh----hh
Confidence 4789999999999998754 33467889999999999999999873 2222223445566543 222222 23
Q ss_pred hcCCCCCC--cCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCch
Q 042863 81 ITGQNQGD--LDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSN 145 (680)
Q Consensus 81 l~~~~~~~--~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~ 145 (680)
++...... .........+.+ ...=.|+||++....+.....+..++... ...+|||.||...
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred hhccccccccccccccCCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 32221110 000000012222 33446789999887777666666665421 2367788888754
No 216
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00018 Score=76.33 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=91.8
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|-++..++|.+.|.-..-...-.-++++++||+|+|||+|++.+|. ...+.| +-+++.+..+..++-..
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGH----- 395 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGH----- 395 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccc-----
Confidence 67778888888887532111222337999999999999999999998 455553 34455554443331100
Q ss_pred cCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh----hHHHHHHHhcCCC--------------C-CCCEEEEec
Q 042863 82 TGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP----KVWDKLKSLLSGG--------------A-KGSKILVTT 142 (680)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~----~~~~~l~~~l~~~--------------~-~~~~iiiTs 142 (680)
....-..-+..+.+.+++. ..++-++++|+++-... +....+...+... + ..+ ++|+|
T Consensus 396 -RRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V-mFiaT 472 (782)
T COG0466 396 -RRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV-MFIAT 472 (782)
T ss_pred -cccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe-EEEee
Confidence 1111111233344444442 44667999998833110 0111222222211 1 233 55666
Q ss_pred CchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHhc
Q 042863 143 RSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAF 179 (680)
Q Consensus 143 R~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 179 (680)
-|..-.-.....++.+.|++.+.+++|-.++-+++..
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 6553211222234558899999999999888887764
No 217
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=2.2e-06 Score=89.74 Aligned_cols=122 Identities=26% Similarity=0.294 Sum_probs=76.4
Q ss_pred ccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChh-hcCCCCCcEEe
Q 042863 382 VRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNA-ICELQSLQTLN 460 (680)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~ 460 (680)
|.+.++++|. -..+...+.-++.|+.|+|++|+++.+- .+..|++|++|||+.|. +..+|.. ..+| +|+.|+
T Consensus 166 L~~a~fsyN~----L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNR----LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred Hhhhhcchhh----HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeee
Confidence 3444555553 2333445666777788888887777664 56677778888887773 4444431 1233 377777
Q ss_pred cCCccccccCcccccccCcccEEEecccccccc--ccccCcccccceeeccccc
Q 042863 461 LEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ--DSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 461 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~ 512 (680)
|.+|. ++++ .++.++.+|+.|++++|-+... ...++.+..|+.|.+.+|.
T Consensus 239 lrnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77763 3332 3567777788888877766654 3445667777777777765
No 218
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.64 E-value=0.00032 Score=80.23 Aligned_cols=136 Identities=20% Similarity=0.293 Sum_probs=78.7
Q ss_pred CCCchhHHHHHHHHHhcCCCC--CCCC-cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG--ESET-VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~--~~~~-~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.++.++.+.+.+.....+ .+.. ..++.++||.|+|||+||+.+++. .-..-...+.++.+.......+
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~---- 584 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV---- 584 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH----
Confidence 479999999999888643211 1222 235678999999999999999973 2111123445555443222111
Q ss_pred HHHhcCC-CCCCcCHHHHHHHHHHHhCCc-eEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 78 IKSITGQ-NQGDLDIEQLQRILRVCLNGK-RYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~-~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
.+-++.+ .....+. ...+.+.++.+ ..+|+||+++..++..++.+...+... ...+.||+||..
T Consensus 585 ~~l~g~~~gyvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 585 SKLIGSPPGYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HHhcCCCCcccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1112211 1111111 11223333333 469999999888888888887777652 235667777765
Q ss_pred h
Q 042863 145 N 145 (680)
Q Consensus 145 ~ 145 (680)
.
T Consensus 662 g 662 (821)
T CHL00095 662 G 662 (821)
T ss_pred c
Confidence 4
No 219
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=5.3e-06 Score=87.04 Aligned_cols=176 Identities=21% Similarity=0.226 Sum_probs=112.0
Q ss_pred CceeEEEEeccCcchhhhHHHhhhc-CCccEEEEecCCcccchHHHHHhhccC------cceeEEEeCCCCccccccccc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDL-GRVRTIFFSINDEKVSQSFVRSCISKS------QFLRVLNLSGSAIEALPKEIG 427 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~------~~L~~L~L~~~~~~~~~~~~~ 427 (680)
..++++.+.++++.. ..+ +..+ ..|++|.-. |......+.+..+.+.. ..|...+.++|.+..+-.++.
T Consensus 109 ~sLr~LElrg~~L~~--~~G-L~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLST--AKG-LQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred cceeeEEecCcchhh--hhh-hHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH
Confidence 356777777776543 111 1222 234444322 22222333333333322 347777888888888888888
Q ss_pred CcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceee
Q 042863 428 NLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLI 507 (680)
Q Consensus 428 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 507 (680)
-++.|+.|+|++|.+. .+- .+..|++|++|||+.|. +..+|.--..-..|+.|++.+|.++.. ..+-++++|+.|+
T Consensus 185 ll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhh-hhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccc
Confidence 8999999999999544 333 57889999999999974 445554211112388999988887766 3567788999999
Q ss_pred cccccCcccc-hhhccCCcccceeecccccCc
Q 042863 508 ISHCRNLEYL-FDDIDQLRVLRSLLIAGCPCL 538 (680)
Q Consensus 508 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~ 538 (680)
+++|-....- ..-++.+..|..|.|.+|++.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9987533321 122455677888888888753
No 220
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00031 Score=76.69 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=87.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCc-----EEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FEL-----KIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~ 74 (680)
.+||++|++++.+.|.+.. ... -.++|+||+|||++|.-+++ ++... -+. .++. +
T Consensus 172 vIGRd~EI~r~iqIL~RR~----KNN--PvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s-L---------- 232 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRT----KNN--PVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS-L---------- 232 (786)
T ss_pred CcChHHHHHHHHHHHhccC----CCC--CeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE-e----------
Confidence 4799999999999998733 222 34589999999999999988 44322 111 1111 0
Q ss_pred HHHHHHhcCCCCCCcCHHH-HHHHHHHHhCCceEEEEEecCCC-----CC----hhHHHHHHHhcCCCCCCCEEEEecCc
Q 042863 75 TKIIKSITGQNQGDLDIEQ-LQRILRVCLNGKRYLLVMDDVWN-----ED----PKVWDKLKSLLSGGAKGSKILVTTRS 144 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~llvlD~~~~-----~~----~~~~~~l~~~l~~~~~~~~iiiTsR~ 144 (680)
. +..+.....-..+.++ +...+.+.-+..++++++|++|. .. .+.-..+.+.+.+..-.+ |=.||-+
T Consensus 233 -D-~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~-IGATT~~ 309 (786)
T COG0542 233 -D-LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRC-IGATTLD 309 (786)
T ss_pred -c-HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEE-EEeccHH
Confidence 0 0111111111223333 33344444444589999999865 11 112223444444432222 4456654
Q ss_pred hHHHHh---hccCCCCCceeCCCCChhhHHHHHHHHhcc
Q 042863 145 NKVASV---MGTRGGTTGYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 145 ~~~~~~---~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
+..... ....-+.+.+.+.+-+.+++..+++....+
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHH
Confidence 432111 011113467899999999999999876533
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.63 E-value=0.00039 Score=78.80 Aligned_cols=179 Identities=18% Similarity=0.161 Sum_probs=94.2
Q ss_pred CCchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|.+++++.+.+.+..+.. -+-..++.+.++|++|+|||++|+.+++ ..... .+.++... +.
T Consensus 181 ~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~---~i~i~~~~------i~ 249 (733)
T TIGR01243 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAY---FISINGPE------IM 249 (733)
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCe---EEEEecHH------Hh
Confidence 5888888888887743210 0113456799999999999999999987 33222 22333211 10
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-----------hhHHHHHHHhcCCCC-CCCEEEE-e
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-----------PKVWDKLKSLLSGGA-KGSKILV-T 141 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-----------~~~~~~l~~~l~~~~-~~~~iii-T 141 (680)
. .. .......+...+.......+.+|++|+++... ......+...+.... .+..++| |
T Consensus 250 ~----~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 250 S----KY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred c----cc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 0 00 00111223333333344567899999984311 112233444444322 2323444 5
Q ss_pred cCchH-HHHhhccCCC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 142 TRSNK-VASVMGTRGG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 142 sR~~~-~~~~~~~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
|.... +........+ ...+.++..+.++..++++........... .....+++.+.|.-
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCC
Confidence 54432 2111111111 135778888889999999865533222111 23467888887764
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.62 E-value=0.00031 Score=69.91 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=68.8
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG 83 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (680)
|....+...+++..... +...+-+.++|+.|+|||.||..+++ .....-..+.|+.+. .++.++......
T Consensus 136 ~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 136 RLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEHH------HHHHHHHHHHhc
Confidence 34445555555554321 12346799999999999999999998 444443446677553 344555444321
Q ss_pred CCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHH--HHHh-cCCC-CCCCEEEEecCch
Q 042863 84 QNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDK--LKSL-LSGG-AKGSKILVTTRSN 145 (680)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~--l~~~-l~~~-~~~~~iiiTsR~~ 145 (680)
.+.. +.+.. + .+--||||||+.......|.. +... +... ..+-.+|+||.-.
T Consensus 206 -----~~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 206 -----GSVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred -----CcHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1222 22222 2 244699999997655555543 3333 3321 2344588888643
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.62 E-value=0.00043 Score=66.18 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC
Q 042863 7 DREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ 86 (680)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (680)
.+..+.+...... .....++++|++|+|||+||..+++ ........++++++ .+++..+-.... .
T Consensus 84 al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it~------~~l~~~l~~~~~---~ 148 (244)
T PRK07952 84 ALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIITV------ADIMSAMKDTFS---N 148 (244)
T ss_pred HHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEH------HHHHHHHHHHHh---h
Confidence 3444555443321 2235789999999999999999998 44444445667743 233333333221 1
Q ss_pred CCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHH--HHHhcCC-CCCCCEEEEecCch
Q 042863 87 GDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDK--LKSLLSG-GAKGSKILVTTRSN 145 (680)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~--l~~~l~~-~~~~~~iiiTsR~~ 145 (680)
...+.+.+. +.+. ..-+||+||+.......|.. +...+.. ....-.+||||.-.
T Consensus 149 ~~~~~~~~l----~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 149 SETSEEQLL----NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred ccccHHHHH----HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 111222222 2233 34488899996654444442 3333432 22223377777643
No 224
>PRK06921 hypothetical protein; Provisional
Probab=97.61 E-value=0.00048 Score=67.20 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=29.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEe
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICI 64 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~ 64 (680)
....++++|++|+|||.||..+++ ..... ...++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 346799999999999999999998 44333 345677764
No 225
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.59 E-value=0.0012 Score=68.46 Aligned_cols=151 Identities=22% Similarity=0.293 Sum_probs=86.4
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceE
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRY 107 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 107 (680)
+++|+||-++||||+++.+.. ...+. +++++..+......-..+..+ ........++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 999999999999999977666 32222 555554332211111111111 11111112678
Q ss_pred EEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhc---cCCCCCceeCCCCChhhHHHHHHHHhcccCCC
Q 042863 108 LLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMG---TRGGTTGYNLQGLPLEDCLSLFMKCAFKEERD 184 (680)
Q Consensus 108 llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 184 (680)
.+++|+++. ...|......+.+.++. +|++|+.++....... ..++...+.+.||+-.|...+.. ....
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~-----~~~~ 168 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG-----EEIE 168 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc-----cccc
Confidence 999999954 45676666666655544 7888887764322111 12445678999999888776543 1000
Q ss_pred CCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 185 KHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 185 ~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
+...+..-.-+-.+||.|.++..-
T Consensus 169 --~~~~~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 169 --PSKLELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred --hhHHHHHHHHHHHhCCCcHHHhCc
Confidence 101122345556679999877543
No 226
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.59 E-value=0.00047 Score=72.94 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=83.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..++-|.++|++|.|||.+|+.++. ..... .+-++.+. +.... ...+...+.+.+...-.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~--e~~~~---~~~l~~~~----------l~~~~-----vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAN--DWQLP---LLRLDVGK----------LFGGI-----VGESESRMRQMIRIAEA 316 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEEhHH----------hcccc-----cChHHHHHHHHHHHHHh
Confidence 3467899999999999999999988 33222 12222211 10000 01111222233333334
Q ss_pred CceEEEEEecCCCC--------ChhH----HHHHHHhcCCCCCCCEEEEecCchHH-HHhhccCCCC-CceeCCCCChhh
Q 042863 104 GKRYLLVMDDVWNE--------DPKV----WDKLKSLLSGGAKGSKILVTTRSNKV-ASVMGTRGGT-TGYNLQGLPLED 169 (680)
Q Consensus 104 ~~~~llvlD~~~~~--------~~~~----~~~l~~~l~~~~~~~~iiiTsR~~~~-~~~~~~~~~~-~~~~l~~l~~~~ 169 (680)
..+++|++|+++.. +.+. ...+...+.....+..||.||.+... ...+...++. ..+.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 57899999998431 1111 11223333334445556667766542 1111111112 457788888999
Q ss_pred HHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 170 CLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
..++|+....+....... ......+++.+.|.
T Consensus 397 R~~Il~~~l~~~~~~~~~--~~dl~~La~~T~Gf 428 (489)
T CHL00195 397 REKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKF 428 (489)
T ss_pred HHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCC
Confidence 999999887554321111 12245677776554
No 227
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0013 Score=68.35 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=79.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
+.=|.++||+|+|||-||+++++ ..+-+ |+++-+ .+++...+.+- .-.+.+.+.+.-...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~N-----FisVKG----PELlNkYVGES---------ErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGAN-----FISVKG----PELLNKYVGES---------ERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCc-----eEeecC----HHHHHHHhhhH---------HHHHHHHHHHhhcCC
Confidence 45689999999999999999999 44444 454433 24444444331 222334444444567
Q ss_pred eEEEEEecCCCC-----C------hhHHHHHHHhcCC--CCCCCEEEEecCchHHHHhhccCC-CC-CceeCCCCChhhH
Q 042863 106 RYLLVMDDVWNE-----D------PKVWDKLKSLLSG--GAKGSKILVTTRSNKVASVMGTRG-GT-TGYNLQGLPLEDC 170 (680)
Q Consensus 106 ~~llvlD~~~~~-----~------~~~~~~l~~~l~~--~~~~~~iiiTsR~~~~~~~~~~~~-~~-~~~~l~~l~~~~~ 170 (680)
+++|+||+++.. + .....++..-+.. ...|.-||-.|..+++....-.++ +. +.+.+..-..+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999998431 1 1122333333332 234665666666665433322222 22 3456777778889
Q ss_pred HHHHHHHhcc
Q 042863 171 LSLFMKCAFK 180 (680)
Q Consensus 171 ~~l~~~~~~~ 180 (680)
.++++.....
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 9999988863
No 228
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0011 Score=63.57 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=49.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcch--hhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQ--RVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
.|.|.+|||||.|||+|++.+++.. |..+.|....-+.++.. .++.+...+- .--+....+.+.+..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 5899999999999999999999853 34455555445544332 2222222211 1224455566777776
Q ss_pred Cce--EEEEEecC
Q 042863 104 GKR--YLLVMDDV 114 (680)
Q Consensus 104 ~~~--~llvlD~~ 114 (680)
++. +.+.+|+|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 665 45668988
No 229
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.55 E-value=0.00035 Score=65.89 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=29.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEe
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICI 64 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~ 64 (680)
-.++|.|++|+|||+++..+.. .....|..++++.-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3578999999999999999987 66778877766643
No 230
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.55 E-value=0.00066 Score=68.69 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.+...+ .....|.|+|++|+||+++|+.+... -...-...+.++|.... . ..+.. .
T Consensus 8 liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~~-~-~~~~~---~ 76 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-E-NLLDS---E 76 (326)
T ss_pred cEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCCC-H-HHHHH---H
Confidence 5788999999999888754 33457999999999999999988752 11122335566776532 1 22221 1
Q ss_pred hcCCCCCC--cCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHH
Q 042863 81 ITGQNQGD--LDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~--~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~ 147 (680)
++...... .........+. ....-.+++||++.........+..++.... ..++||.||.....
T Consensus 77 lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~ 153 (326)
T PRK11608 77 LFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (326)
T ss_pred HccccccccCCcccccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHH
Confidence 21111000 00000011111 1223457799998877777777776664321 24678887764321
Q ss_pred H--------HhhccCCCCCceeCCCCChh
Q 042863 148 A--------SVMGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 148 ~--------~~~~~~~~~~~~~l~~l~~~ 168 (680)
. ......-....+.++||.+.
T Consensus 154 ~l~~~g~f~~dL~~~l~~~~i~lPpLReR 182 (326)
T PRK11608 154 AMVAEGKFRADLLDRLAFDVVQLPPLRER 182 (326)
T ss_pred HHHHcCCchHHHHHhcCCCEEECCChhhh
Confidence 1 11111112356889998763
No 231
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0006 Score=71.71 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=84.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..++-|.+|||||+|||++|+.+++ .-+-.| +.+.. .+++..... .+...+...+++.-+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkg----pEL~sk~vG---------eSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKG----PELFSKYVG---------ESERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccC----HHHHHHhcC---------chHHHHHHHHHHHhh
Confidence 5578899999999999999999998 433343 22221 112221111 112223333333334
Q ss_pred CceEEEEEecCCCC-----------ChhHHHHHHHhcCCCC--CCCEEEEecCchHHHHhhccC-CC-CCceeCCCCChh
Q 042863 104 GKRYLLVMDDVWNE-----------DPKVWDKLKSLLSGGA--KGSKILVTTRSNKVASVMGTR-GG-TTGYNLQGLPLE 168 (680)
Q Consensus 104 ~~~~llvlD~~~~~-----------~~~~~~~l~~~l~~~~--~~~~iiiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~ 168 (680)
..+++++||+++.. ....+.++..-+.... .+.-||-.|..+......-.+ ++ .+.+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 56799999988431 1112233333344322 233344444444332222222 22 245778888888
Q ss_pred hHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 169 DCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
...++|+..+.+-.....-+ ..+|+++++|.
T Consensus 606 aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~ 636 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSEDVD----LEELAQATEGY 636 (693)
T ss_pred HHHHHHHHHHhcCCCCcccc----HHHHHHHhccC
Confidence 88999999886654443322 35666666654
No 232
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.53 E-value=1.1e-05 Score=74.79 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=20.9
Q ss_pred ccCcCCcceeccccccCCCcc----ChhhcCCCCCcEEecCC
Q 042863 426 IGNLKHMRYLDLSRNYKIKKL----PNAICELQSLQTLNLEE 463 (680)
Q Consensus 426 ~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~ 463 (680)
+..+..+.+++||+|.+.+.- ...+.+-.+|+..++++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 334566677777777655432 23333445566666554
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.51 E-value=4.6e-05 Score=66.84 Aligned_cols=90 Identities=30% Similarity=0.340 Sum_probs=50.8
Q ss_pred EEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEE
Q 042863 29 IPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYL 108 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l 108 (680)
|.++|++|+|||+||+.+++ .... ....+.+....+..+++...--. ..........+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~---~~~~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS---NGQFEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET----TTTTCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec---ccccccccccccccc-----cceeE
Confidence 78999999999999999998 3322 24456677666666544322111 110000000000000 17899
Q ss_pred EEEecCCCCChhHHHHHHHhcCC
Q 042863 109 LVMDDVWNEDPKVWDKLKSLLSG 131 (680)
Q Consensus 109 lvlD~~~~~~~~~~~~l~~~l~~ 131 (680)
+|+|++...++..+..+...+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSS
T ss_pred EEECCcccCCHHHHHHHHHHHhh
Confidence 99999977676666666666554
No 234
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=8.3e-05 Score=49.68 Aligned_cols=35 Identities=40% Similarity=0.562 Sum_probs=24.0
Q ss_pred cceeEEEeCCCCcccccccccCcCCcceecccccc
Q 042863 407 QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNY 441 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~ 441 (680)
++|++|++++|.++.+|+.+.+|++|+.|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35777777777777777667777777777777774
No 235
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=1.8e-05 Score=65.67 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=75.0
Q ss_pred ccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccccccc-CcCCcceeccccccCCCccChhhcCCCCCcEEe
Q 042863 382 VRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIG-NLKHMRYLDLSRNYKIKKLPNAICELQSLQTLN 460 (680)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 460 (680)
+..++|++|.... ..-....+.....|+..+|++|.+..+|+.+. +.+.++.|++.+| .+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 4455666654321 12222345666778888888888888887765 4568888888877 5677888888888888888
Q ss_pred cCCccccccCcccccccCcccEEEecccccccc
Q 042863 461 LEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ 493 (680)
Q Consensus 461 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 493 (680)
++.|. ....|..+..+.+|..|+..+|....+
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCCCccccC
Confidence 88875 445666666677777777777765554
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.48 E-value=0.00019 Score=65.40 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++++|++|+|||.||..+++ .....--.+.|++.. +++..+-. . ........ .+... . +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~~~------~L~~~l~~----~-~~~~~~~~---~~~~l-~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFITAS------DLLDELKQ----S-RSDGSYEE---LLKRL-K-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEHH------HHHHHHHC----C-HCCTTHCH---HHHHH-H-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEeecC------ceeccccc----c-ccccchhh---hcCcc-c-c
Confidence 46799999999999999999987 333333346777543 33333322 1 11122222 22222 1 2
Q ss_pred eEEEEEecCCCCChhHHHH--HHHhcCC-CCCCCEEEEecCch
Q 042863 106 RYLLVMDDVWNEDPKVWDK--LKSLLSG-GAKGSKILVTTRSN 145 (680)
Q Consensus 106 ~~llvlD~~~~~~~~~~~~--l~~~l~~-~~~~~~iiiTsR~~ 145 (680)
--|||+||+.......|.. +...+.. .... .+||||.-.
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3588899996544333322 2233332 1223 478888754
No 237
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.002 Score=65.89 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhcCCC--C-CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhc
Q 042863 6 KDREKIIEALMQTSS--G-ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSIT 82 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~--~-~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (680)
+|+++|.+.|..+.. . ++.=++=|.++||+|.|||-||++++-. .. +.|...+. ..+++++- .
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE--A~-----VPFF~~sG-SEFdEm~V----G-- 379 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE--AG-----VPFFYASG-SEFDEMFV----G-- 379 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc--cC-----CCeEeccc-cchhhhhh----c--
Confidence 466666666654321 1 1233788999999999999999999973 22 22333322 11222111 1
Q ss_pred CCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhHHHHHHHhcCCCC--CCCEEEEecCchHHHH
Q 042863 83 GQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKVWDKLKSLLSGGA--KGSKILVTTRSNKVAS 149 (680)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~~~~l~~~l~~~~--~~~~iiiTsR~~~~~~ 149 (680)
.....+...+...-+.-+++|++|+++.- ....+.++..-+..+. .|..||-.|..++...
T Consensus 380 ------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 380 ------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred ------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 11222333333333456899999988431 1112344555555543 3555555666555444
Q ss_pred hhccCCC-CC-ceeCCCCChhhHHHHHHHHhccc
Q 042863 150 VMGTRGG-TT-GYNLQGLPLEDCLSLFMKCAFKE 181 (680)
Q Consensus 150 ~~~~~~~-~~-~~~l~~l~~~~~~~l~~~~~~~~ 181 (680)
..-.+++ .. .+.++.-+-.=..++|..+..+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 4433332 22 34454444444556666665443
No 238
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.48 E-value=0.00025 Score=58.68 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHhhcc
Q 042863 29 IPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~ 49 (680)
|.|+|++|+|||++|+.++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998873
No 239
>PRK06526 transposase; Provisional
Probab=97.47 E-value=0.00029 Score=68.09 Aligned_cols=101 Identities=23% Similarity=0.197 Sum_probs=54.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++++|++|+|||+||..++. ........+.|++. ..++..+.... .... ....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~--~a~~~g~~v~f~t~------~~l~~~l~~~~-----~~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI--RACQAGHRVLFATA------AQWVARLAAAH-----HAGR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH--HHHHCCCchhhhhH------HHHHHHHHHHH-----hcCc---HHHHHHHh--cc
Confidence 35799999999999999999987 33332223444322 23333333221 0111 11223322 23
Q ss_pred eEEEEEecCCCCC--hhHHHHHHHhcCC-CCCCCEEEEecCch
Q 042863 106 RYLLVMDDVWNED--PKVWDKLKSLLSG-GAKGSKILVTTRSN 145 (680)
Q Consensus 106 ~~llvlD~~~~~~--~~~~~~l~~~l~~-~~~~~~iiiTsR~~ 145 (680)
.-+||+||+.... ......+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 4589999996532 2222334444432 22344 88888755
No 240
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0025 Score=64.21 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=61.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL 102 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 102 (680)
..++.++++|++|+||||++..++. .....-..+.+++..... ...+-+......++.+.....+...+.+.+...-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 3458999999999999999999987 333333346666665432 1122233333444433333345666666665543
Q ss_pred CC-ceEEEEEecCCCC--ChhHHHHHHHhcCC
Q 042863 103 NG-KRYLLVMDDVWNE--DPKVWDKLKSLLSG 131 (680)
Q Consensus 103 ~~-~~~llvlD~~~~~--~~~~~~~l~~~l~~ 131 (680)
.. ..-+|++|-.... +......+...+..
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 32 3458889987542 23345555555544
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.46 E-value=0.00014 Score=72.40 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=42.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
++|-++.++++..++.....+.+...++++++||+|+||||||+.+++.
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998866444556789999999999999999999884
No 242
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.45 E-value=0.00028 Score=79.35 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
.+|.++..++|.+++.............+.++|++|+||||+|+.++. .....| +-++.....+...+.... +.
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~-~~ 397 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR-RT 397 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch-hc
Confidence 378888889998877632211122345799999999999999999987 333332 223344333332211110 00
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhH----HHHHHHhcCCC---------------CCCCEEEEe
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKV----WDKLKSLLSGG---------------AKGSKILVT 141 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~----~~~l~~~l~~~---------------~~~~~iiiT 141 (680)
. .......+.+.+... ...+.++++|+++...... .+.+...+... -....+|.|
T Consensus 398 ~-----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 398 Y-----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred c-----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 0 001112223333332 2234578999996543221 24444444321 134444555
Q ss_pred cCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 142 TRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
+....+... ...+...+.+.+++++|-.++.++..
T Consensus 472 aN~~~i~~a--Ll~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 472 SNSMNIPAP--LLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCCHH--HhcceeeeecCCCCHHHHHHHHHHhh
Confidence 543322111 22445678999999999998888766
No 243
>PTZ00494 tuzin-like protein; Provisional
Probab=97.45 E-value=0.0041 Score=62.64 Aligned_cols=166 Identities=11% Similarity=0.108 Sum_probs=103.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
||.|+.|-..+.+.|.+. +...+|++++.|.-|.|||+|.+.+.+. .--..+++++.... .-++.+++.
T Consensus 373 ~V~R~~eE~~vRqvL~ql---d~aHPRIvV~TG~~GcGKSslcRsAvrk-----E~~paV~VDVRg~E---DtLrsVVKA 441 (664)
T PTZ00494 373 EVRREDEEALVRSVLTQM---APSHPRIVALAGGSGGGRCVPCRRAVRV-----EGVALVHVDVGGTE---DTLRSVVRA 441 (664)
T ss_pred ccchhhHHHHHHHHHhhc---cCCCCcEEEEecCCCCCchHHHHHHHHH-----cCCCeEEEEecCCc---chHHHHHHH
Confidence 578888888888888773 4678999999999999999999998872 22347788887643 556778888
Q ss_pred hcCCCCCC-cCHHHHH----HHHHHHhCCceEEEEEecCCCCChh-HHHHHHHhcCCCCCCCEEEEecCchHHHHhhccC
Q 042863 81 ITGQNQGD-LDIEQLQ----RILRVCLNGKRYLLVMDDVWNEDPK-VWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTR 154 (680)
Q Consensus 81 l~~~~~~~-~~~~~~~----~~~~~~l~~~~~llvlD~~~~~~~~-~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~ 154 (680)
++.+..+. .|.-+.+ ...+....++.-+||+-==...+.. .+..... +.-...-|+|++--=-+.+....-..
T Consensus 442 LgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESLT~~n~~L 520 (664)
T PTZ00494 442 LGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKALTPLNVSS 520 (664)
T ss_pred hCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhhchhhccC
Confidence 87654332 2222222 2222223455556665322112111 1222222 22223467777654433333333333
Q ss_pred CCCCceeCCCCChhhHHHHHHHHh
Q 042863 155 GGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 155 ~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
++...+.+++|+.++|.++.+...
T Consensus 521 PRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 521 RRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccceeEecCCcCHHHHHHHHhccc
Confidence 555789999999999999988765
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.44 E-value=0.00069 Score=67.96 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=57.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
..++++|++|+|||.||..+++ ...+....++|++... ++..+...-... ..+... .+.. +. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~---~~~~-l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTADE------LIEILREIRFNN---DKELEE---VYDL-LI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEHHH------HHHHHHHHHhcc---chhHHH---HHHH-hc-cC
Confidence 6799999999999999999998 4444444577776532 333332211111 111111 1222 21 22
Q ss_pred EEEEEecCCCCCh--hHHHHHHHhcCCC-CCCCEEEEecCch
Q 042863 107 YLLVMDDVWNEDP--KVWDKLKSLLSGG-AKGSKILVTTRSN 145 (680)
Q Consensus 107 ~llvlD~~~~~~~--~~~~~l~~~l~~~-~~~~~iiiTsR~~ 145 (680)
-|||+||+..... .....+...+... ..+-.+||||.-.
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 5899999965432 2234455555432 2234488888643
No 245
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0028 Score=68.98 Aligned_cols=176 Identities=13% Similarity=0.169 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC
Q 042863 7 DREKIIEALMQTSS---GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG 83 (680)
Q Consensus 7 ~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (680)
|++++.+.|..+.. -+..-++=+.++||+|.|||-||+++|-. . .+.|++++.. -+.++....
T Consensus 322 El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--A-----gVPF~svSGS-----EFvE~~~g~-- 387 (774)
T KOG0731|consen 322 ELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--A-----GVPFFSVSGS-----EFVEMFVGV-- 387 (774)
T ss_pred HHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--c-----CCceeeechH-----HHHHHhccc--
Confidence 44444455543221 12345788999999999999999999973 2 3556666652 111111111
Q ss_pred CCCCCcCHHHHHHHHHHHhCCceEEEEEecCCC---------------CChhHHHHHHHhcCCCCC--CCEEEEecCchH
Q 042863 84 QNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWN---------------EDPKVWDKLKSLLSGGAK--GSKILVTTRSNK 146 (680)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~---------------~~~~~~~~l~~~l~~~~~--~~~iiiTsR~~~ 146 (680)
....+.......-+..+.+|.+|+++. .....++++..-+..+.. +..++-+|+.+.
T Consensus 388 ------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 388 ------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred ------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 122333333343356678999887732 111233444444454433 344444666554
Q ss_pred HHHhhccCC-C-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 147 VASVMGTRG-G-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 147 ~~~~~~~~~-~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
+....-.++ + .+.+.+..-+.....++|.-++...... .+..+... |+..+-|++=
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcH
Confidence 333322222 2 2457787778888889998887554332 22233444 9999988873
No 246
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.41 E-value=0.00088 Score=73.14 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=88.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.+...+ .....|.|+|++|+|||++|+.+++. -...-...+.++|..... ..+. ..
T Consensus 198 liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~--s~r~~~pfv~i~c~~~~~--~~~~---~~ 266 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL--SPRAKRPFVKVNCAALSE--TLLE---SE 266 (534)
T ss_pred eEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeecCCCCH--HHHH---HH
Confidence 4688888899888887744 33457899999999999999999873 211222355666665322 2222 22
Q ss_pred hcCCCCCCc--CHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHH
Q 042863 81 ITGQNQGDL--DIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~--~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~ 147 (680)
+++...... ........+ .....-.|+||+++.........+..++.... ...++|.||.....
T Consensus 267 lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~ 343 (534)
T TIGR01817 267 LFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLE 343 (534)
T ss_pred HcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHH
Confidence 222111000 000000000 01234468899998877777777777665321 13578887754321
Q ss_pred HHhhc--------cCCCCCceeCCCCCh--hhHHHHHHH
Q 042863 148 ASVMG--------TRGGTTGYNLQGLPL--EDCLSLFMK 176 (680)
Q Consensus 148 ~~~~~--------~~~~~~~~~l~~l~~--~~~~~l~~~ 176 (680)
..... +.-....+.++||.+ +|...|+..
T Consensus 344 ~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~ 382 (534)
T TIGR01817 344 EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEA 382 (534)
T ss_pred HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHH
Confidence 11100 001124578889973 454444443
No 247
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.39 E-value=0.0021 Score=72.46 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=86.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++.+.+.+...+ .....|.|.|++|+|||.+|+.+.+. -.......+.++|.... ...+.. .
T Consensus 378 liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~--s~r~~~~~v~i~c~~~~--~~~~~~---~ 446 (686)
T PRK15429 378 IIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNL--SGRNNRRMVKMNCAAMP--AGLLES---D 446 (686)
T ss_pred eeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHh--cCCCCCCeEEEecccCC--hhHhhh---h
Confidence 4688888888887777643 33457999999999999999999863 22222345667776532 122221 1
Q ss_pred hcCCCCCC--cCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCchHH
Q 042863 81 ITGQNQGD--LDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~--~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~~ 147 (680)
++...... .........+. ...+-.|+|||+..........+..++... ..++|+|.||.....
T Consensus 447 lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~ 523 (686)
T PRK15429 447 LFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLK 523 (686)
T ss_pred hcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHH
Confidence 22111100 00011111221 123356899999887777777777766432 135688888765421
Q ss_pred HHh--------hccCCCCCceeCCCCChh
Q 042863 148 ASV--------MGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 148 ~~~--------~~~~~~~~~~~l~~l~~~ 168 (680)
... ....-....+.+|||.+.
T Consensus 524 ~~~~~~~f~~~L~~~l~~~~i~lPpLreR 552 (686)
T PRK15429 524 KMVADREFRSDLYYRLNVFPIHLPPLRER 552 (686)
T ss_pred HHHHcCcccHHHHhccCeeEEeCCChhhh
Confidence 110 011112245889999773
No 248
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=8.1e-05 Score=82.09 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=99.7
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcc--cccccccCcCCcceeccccccCCCccChhhcCCCCCc
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIE--ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQ 457 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 457 (680)
.+|+.|++++. ..+...++...-..+|.|+.|.+++-.+. ++.....++|+|..||+++++ +..+ ..++.+++|+
T Consensus 122 ~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 56888999885 34567777777788999999999996665 444556678999999999884 4444 4588899999
Q ss_pred EEecCCccccc-cCcccccccCcccEEEeccccccccc-------cccCcccccceeecccccCcccch-hhccCCcccc
Q 042863 458 TLNLEECLELE-ELPKDIRYLVSLRVFEVTTKQKSLQD-------SGIGCLVSLRCLIISHCRNLEYLF-DDIDQLRVLR 528 (680)
Q Consensus 458 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 528 (680)
+|.+.+-.+.. ..-..+.++++|+.|+++.......+ ..-..+|.|+.|+.++...-..+. ..+...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99887654332 12235678889999999876544332 111347788888888754333222 1222345555
Q ss_pred eeec
Q 042863 529 SLLI 532 (680)
Q Consensus 529 ~L~l 532 (680)
.+.+
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 5443
No 249
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.38 E-value=0.0024 Score=61.72 Aligned_cols=174 Identities=21% Similarity=0.220 Sum_probs=95.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHH-HHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGER-QIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (680)
|+|-.++.+.+.+++.+.+ --++...|.+.||.|.|||.|......+ .++.-...+-+...+....+ -.+..+.+
T Consensus 26 l~g~~~~~~~l~~~lkqt~--~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTI--LHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred eeehHHHHHHHHHHHHHHH--HhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 5677888888888887643 1234457899999999999998766653 22222334455555543332 23445555
Q ss_pred Hhc----CCCCCCcCHHHHHHHHHHHhCC------ceEEEEEecCCCCChh-HHHHHHHhcC---C-CCCCCEEEEecCc
Q 042863 80 SIT----GQNQGDLDIEQLQRILRVCLNG------KRYLLVMDDVWNEDPK-VWDKLKSLLS---G-GAKGSKILVTTRS 144 (680)
Q Consensus 80 ~l~----~~~~~~~~~~~~~~~~~~~l~~------~~~llvlD~~~~~~~~-~~~~l~~~l~---~-~~~~~~iiiTsR~ 144 (680)
++. .......+..+....+-+.++. .++++|+|+++-.-+. ..-.+..++. . ..+-+.|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 543 2222333444444444444432 2578888887442221 1122333333 1 2345667789985
Q ss_pred hHH---HHhhccCCCCCce-eCCCCChhhHHHHHHHHh
Q 042863 145 NKV---ASVMGTRGGTTGY-NLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 145 ~~~---~~~~~~~~~~~~~-~l~~l~~~~~~~l~~~~~ 178 (680)
.-. ..-...+..-+.+ -++.+.-++.+.++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 422 2222222222434 455667788888888766
No 250
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0016 Score=72.31 Aligned_cols=133 Identities=22% Similarity=0.260 Sum_probs=84.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCC--CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESE--TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKII 78 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (680)
++|.++++..|.+.+.....+... ..-++.+.||-|+|||.||++++. .+-+..+..+-++.+.... +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e-------vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE-------VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh-------hh
Confidence 478999999999999865433333 567888999999999999999987 4444445555666554221 22
Q ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCCce-EEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 79 KSITGQNQGDLDIEQLQRILRVCLNGKR-YLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
+..+.+. .+--.+....+.+.++.++ .+|+|||+.-+++.....+...+... .+++.||+|+..
T Consensus 635 kligsp~--gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 635 KLIGSPP--GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred hccCCCc--ccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 3323221 1111122335555665555 58889999888877777565665543 134556667654
No 251
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.38 E-value=0.0087 Score=59.26 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC
Q 042863 5 DKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ 84 (680)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (680)
.+....+...+.. .+.|.|.|++|+|||++|+.++. ..... .+.+++.......++...-.-.+. .
T Consensus 51 ~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~DliG~~~~~l~-~ 116 (327)
T TIGR01650 51 KATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDLVGKDAIVLK-D 116 (327)
T ss_pred HHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhcCCCceeecc-C
Confidence 3455556666643 24699999999999999999998 43322 335555554444332222110000 0
Q ss_pred CCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC--------------CCCCEEEEecCchHHHHh
Q 042863 85 NQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG--------------AKGSKILVTTRSNKVASV 150 (680)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~--------------~~~~~iiiTsR~~~~~~~ 150 (680)
....... ....+-.. .....++++|++....+.....+...+... ++..++|.|.........
T Consensus 117 g~~~~~f--~~GpL~~A-~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~ 193 (327)
T TIGR01650 117 GKQITEF--RDGILPWA-LQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDT 193 (327)
T ss_pred CcceeEE--ecCcchhH-HhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCC
Confidence 0000000 00001111 124577999999777766655544443321 235556666553220000
Q ss_pred ----hc-------cCCCCC-ceeCCCCChhhHHHHHHHHh
Q 042863 151 ----MG-------TRGGTT-GYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 151 ----~~-------~~~~~~-~~~l~~l~~~~~~~l~~~~~ 178 (680)
.. ..++.. .+.+.-++.++=.+++....
T Consensus 194 ~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 194 TGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 00 001111 23577777777777776654
No 252
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.38 E-value=0.0012 Score=70.23 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC 63 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 63 (680)
-.+.++++..||.... ......+++.++||+|+||||.++.+++. . .|+..-|.+
T Consensus 24 hkkKv~eV~~wl~~~~-~~~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~n 78 (519)
T PF03215_consen 24 HKKKVEEVRSWLEEMF-SGSSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWIN 78 (519)
T ss_pred cHHHHHHHHHHHHHHh-ccCCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecC
Confidence 3466788999998633 12234579999999999999999999873 2 344445654
No 253
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0033 Score=57.99 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=73.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
+.++-|.+|||+|.|||.||++++++ .... |+.+.+. +.....+.+ + +..+...++-.-.
T Consensus 187 dpprgvllygppg~gktml~kava~~--t~a~-----firvvgs----efvqkylge----g-----prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH--TTAA-----FIRVVGS----EFVQKYLGE----G-----PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc--cchh-----eeeeccH----HHHHHHhcc----C-----cHHHHHHHHHHhc
Confidence 56788999999999999999999983 3333 3332221 122222111 1 1111222222224
Q ss_pred CceEEEEEecCCC-----------CChhHHHHHHHhcC---CC--CCCCEEEEecCchHHHHhhccCC--CCCceeCCCC
Q 042863 104 GKRYLLVMDDVWN-----------EDPKVWDKLKSLLS---GG--AKGSKILVTTRSNKVASVMGTRG--GTTGYNLQGL 165 (680)
Q Consensus 104 ~~~~llvlD~~~~-----------~~~~~~~~l~~~l~---~~--~~~~~iiiTsR~~~~~~~~~~~~--~~~~~~l~~l 165 (680)
+.+.+|++|+++. .+.+...-+..++. .+ ..+.++|+.|....-....-.++ -.+.++.+--
T Consensus 247 napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCC
Confidence 6678889998732 22222233334433 22 24678888776543221111111 1245777755
Q ss_pred ChhhHHHHHHHHhcccCCC
Q 042863 166 PLEDCLSLFMKCAFKEERD 184 (680)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~ 184 (680)
++.+-+-.|.....+-...
T Consensus 327 drrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 327 DRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred chhhhhhhHHhhhhcccCC
Confidence 6667777777666544333
No 254
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.37 E-value=0.0021 Score=68.97 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=88.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.+...+ .....|.|.|++|.||+.+|+.+++.. ...-...+-++|..-. +..+ -.+
T Consensus 214 iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S--~r~~~pfv~inC~~l~--e~ll---ese 282 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLS--GRRDFPFVAINCGAIA--ESLL---EAE 282 (526)
T ss_pred eeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhc--CcCCCCEEEeccccCC--hhHH---HHH
Confidence 4788888888888887643 334579999999999999999998631 1111234455665432 2222 223
Q ss_pred hcCCCCCCcCHH---HHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchH
Q 042863 81 ITGQNQGDLDIE---QLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNK 146 (680)
Q Consensus 81 l~~~~~~~~~~~---~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~ 146 (680)
+++.......-. .....+. ....-.|+||++..........+..++.... .+.|||.||....
T Consensus 283 LFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l 359 (526)
T TIGR02329 283 LFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCAL 359 (526)
T ss_pred hcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCH
Confidence 332211110000 0000011 1223458899998877777777777765321 2347887775432
Q ss_pred HHH--------hhccCCCCCceeCCCCChh--hHHHHHH
Q 042863 147 VAS--------VMGTRGGTTGYNLQGLPLE--DCLSLFM 175 (680)
Q Consensus 147 ~~~--------~~~~~~~~~~~~l~~l~~~--~~~~l~~ 175 (680)
... .....-....+.+|||.+. |...|+.
T Consensus 360 ~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~ 398 (526)
T TIGR02329 360 TTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAA 398 (526)
T ss_pred HHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHH
Confidence 111 1111112356889999873 4444433
No 255
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0035 Score=66.52 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=89.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
..-|.+||++|.|||-||.+++.... .-|+++-+. +++.+.+.+ +.+.+.....+.-..+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----ElL~KyIGa---------SEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----ELLSKYIGA---------SEQNVRDLFERAQSAK 760 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----HHHHHHhcc---------cHHHHHHHHHHhhccC
Confidence 34589999999999999999987422 225555431 333333222 3344555555666789
Q ss_pred eEEEEEecCCCCC-------h----hHHHHHHHhcCCC--CCCCEEEE-ecCchHHHHhhccCCCC-CceeCCCCChhhH
Q 042863 106 RYLLVMDDVWNED-------P----KVWDKLKSLLSGG--AKGSKILV-TTRSNKVASVMGTRGGT-TGYNLQGLPLEDC 170 (680)
Q Consensus 106 ~~llvlD~~~~~~-------~----~~~~~l~~~l~~~--~~~~~iii-TsR~~~~~~~~~~~~~~-~~~~l~~l~~~~~ 170 (680)
+++++||+++... . ....++..-+... -.|.-|+- |||..-+....-..++. +.+.=+.-++.+.
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 9999999995411 1 1223444444432 23554554 55544333322222222 2344555567788
Q ss_pred HHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 171 LSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
.++|+..+.......+ -....++.+++|.--
T Consensus 841 l~il~~ls~s~~~~~~----vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 841 LEILQVLSNSLLKDTD----VDLECLAQKTDGFTG 871 (952)
T ss_pred HHHHHHHhhccCCccc----cchHHHhhhcCCCch
Confidence 8999887754433222 334678888888654
No 256
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0015 Score=66.83 Aligned_cols=137 Identities=23% Similarity=0.261 Sum_probs=76.7
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Q 042863 22 ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC 101 (680)
Q Consensus 22 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (680)
...+...+.++|++|+|||+||.+++. ...|+.+--++........+.. -...+.......
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sEsa---------------Kc~~i~k~F~DA 594 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSESA---------------KCAHIKKIFEDA 594 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccHHH---------------HHHHHHHHHHHh
Confidence 445678899999999999999998876 3567744333222111111100 111222233333
Q ss_pred hCCceEEEEEecCCCC----------ChhHHHHHHHhcCCCCC-CCE--EEEecCchHHHHhhccCCCC-CceeCCCCCh
Q 042863 102 LNGKRYLLVMDDVWNE----------DPKVWDKLKSLLSGGAK-GSK--ILVTTRSNKVASVMGTRGGT-TGYNLQGLPL 167 (680)
Q Consensus 102 l~~~~~llvlD~~~~~----------~~~~~~~l~~~l~~~~~-~~~--iiiTsR~~~~~~~~~~~~~~-~~~~l~~l~~ 167 (680)
.+..--+||+||+... .-..+..+.-++...++ |-+ |+-||....+...+...+.. ..+.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3445579999998320 00111223333443332 333 44477777777777654333 3588999988
Q ss_pred -hhHHHHHHHH
Q 042863 168 -EDCLSLFMKC 177 (680)
Q Consensus 168 -~~~~~l~~~~ 177 (680)
++..+.+...
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6777777654
No 257
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.36 E-value=0.0013 Score=71.23 Aligned_cols=154 Identities=13% Similarity=0.147 Sum_probs=87.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.+...+ .....|.|+|+.|+||+++|+.+.+. -...-...+.++|..... ..+. .+
T Consensus 189 iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~--s~r~~~p~v~v~c~~~~~--~~~e---~~ 257 (509)
T PRK05022 189 MIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAA--SPRADKPLVYLNCAALPE--SLAE---SE 257 (509)
T ss_pred eeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh--CCcCCCCeEEEEcccCCh--HHHH---HH
Confidence 4788888988888888744 34557999999999999999999873 222223456777776432 2111 12
Q ss_pred hcCCCCCC--cCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHH
Q 042863 81 ITGQNQGD--LDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~--~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~ 147 (680)
++...... .........+.. .+ .-.|+||++..........+..++.... .+++||.||.....
T Consensus 258 lfG~~~g~~~ga~~~~~g~~~~--a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~ 334 (509)
T PRK05022 258 LFGHVKGAFTGAISNRSGKFEL--AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLR 334 (509)
T ss_pred hcCccccccCCCcccCCcchhh--cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHH
Confidence 22211100 000000011111 22 2346899998877777777777665321 25688887765421
Q ss_pred HH--------hhccCCCCCceeCCCCChh
Q 042863 148 AS--------VMGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 148 ~~--------~~~~~~~~~~~~l~~l~~~ 168 (680)
.. ...+.-....+.||||.+.
T Consensus 335 ~~~~~~~f~~dL~~rl~~~~i~lPpLreR 363 (509)
T PRK05022 335 EEVRAGRFRADLYHRLSVFPLSVPPLRER 363 (509)
T ss_pred HHHHcCCccHHHHhcccccEeeCCCchhc
Confidence 11 0111112345889999763
No 258
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.35 E-value=0.0011 Score=58.48 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=66.7
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc---CCHHHHHHHHHHHh-----cCC-----CCCCcC---H
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED---FGERQIMTKIIKSI-----TGQ-----NQGDLD---I 91 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l-----~~~-----~~~~~~---~ 91 (680)
.|-||+..|.||||+|...+. +...+--.+.++-.... ......+..+ ..+ +.. .....+ .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 688899999999999977776 55444444555443332 3333433333 111 000 000111 1
Q ss_pred HHHHHHHHHHhCC-ceEEEEEecCCC---CChhHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 92 EQLQRILRVCLNG-KRYLLVMDDVWN---EDPKVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 92 ~~~~~~~~~~l~~-~~~llvlD~~~~---~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
.+..+..++.+.. .--++|||++-. ......+.+...+...+....+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222333334443 345999999833 233455677888888887888999999864
No 259
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.30 E-value=0.0014 Score=62.83 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHH
Q 042863 10 KIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGER 71 (680)
Q Consensus 10 ~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (680)
.+.+.|.. +=..-.++.|+|++|+|||++|.+++. ........++|++.. ..+..
T Consensus 11 ~lD~~l~G----Gi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~ 65 (225)
T PRK09361 11 MLDELLGG----GFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPE 65 (225)
T ss_pred HHHHHhcC----CCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHH
Confidence 45555532 223346899999999999999999987 443445678899887 44443
No 260
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0031 Score=66.91 Aligned_cols=167 Identities=15% Similarity=0.079 Sum_probs=88.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...|.+.|+.|+|||+||++++.... .+.+..+.+++++.-.... +..+-. .+...+.+.+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~--~e~iQk-------------~l~~vfse~~~~~ 494 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS--LEKIQK-------------FLNNVFSEALWYA 494 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh--HHHHHH-------------HHHHHHHHHHhhC
Confidence 45799999999999999999998433 3445556677776532111 111111 1233455566778
Q ss_pred eEEEEEecCCCC------ChhHH----HHHHHhc-------CCCCCCCEEEEecCchHHHHhhccCCC--CCceeCCCCC
Q 042863 106 RYLLVMDDVWNE------DPKVW----DKLKSLL-------SGGAKGSKILVTTRSNKVASVMGTRGG--TTGYNLQGLP 166 (680)
Q Consensus 106 ~~llvlD~~~~~------~~~~~----~~l~~~l-------~~~~~~~~iiiTsR~~~~~~~~~~~~~--~~~~~l~~l~ 166 (680)
+-+||+||++.. +-..+ ..+..++ ...++...+|.|...-.-....-..+. ...+.++++.
T Consensus 495 PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 495 PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 899999999431 00111 1122222 111222223434332211110000011 1346799999
Q ss_pred hhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC-hhHHHHHH
Q 042863 167 LEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI-PLAVRTLG 211 (680)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~ 211 (680)
..+..++++....... .....+...-+..+|+|. |.-+.++.
T Consensus 575 ~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred hhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 9999998887763332 111223334588888774 45555554
No 261
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.30 E-value=0.0029 Score=68.48 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=84.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+|....++++.+.+...+ .....|.|+|+.|+||+.+|+.+.+. -...-...+.++|.... ...+. ..
T Consensus 206 ~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~--s~r~~~pfv~inca~~~--~~~~e---~e 274 (520)
T PRK10820 206 IVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLR--SPRGKKPFLALNCASIP--DDVVE---SE 274 (520)
T ss_pred eeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeccccCC--HHHHH---HH
Confidence 5778887888877776533 22345899999999999999997652 11222344567776643 22222 22
Q ss_pred hcCCCCCCc-CH-HHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCchHH
Q 042863 81 ITGQNQGDL-DI-EQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~-~~-~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~~ 147 (680)
++....... .. +.....+. ....-.|++|+++.........+..++... ...+|||.||.....
T Consensus 275 lFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~ 351 (520)
T PRK10820 275 LFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV 351 (520)
T ss_pred hcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHH
Confidence 222111000 00 00000111 122335789999887777767777776542 124578887765421
Q ss_pred HHh--------hccCCCCCceeCCCCChh
Q 042863 148 ASV--------MGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 148 ~~~--------~~~~~~~~~~~l~~l~~~ 168 (680)
... ..+.-....+.+|||.+.
T Consensus 352 ~l~~~g~f~~dL~~rL~~~~i~lPpLreR 380 (520)
T PRK10820 352 ELVQKGEFREDLYYRLNVLTLNLPPLRDR 380 (520)
T ss_pred HHHHcCCccHHHHhhcCeeEEeCCCcccC
Confidence 110 111112356889999874
No 262
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.30 E-value=0.011 Score=59.29 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=35.9
Q ss_pred ceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHH
Q 042863 159 GYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAV 207 (680)
Q Consensus 159 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l 207 (680)
++.+++++++|+..++.-+....-...........+++...++|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755433221333455678888889999754
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0014 Score=63.43 Aligned_cols=102 Identities=25% Similarity=0.232 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
...++++|++|+|||.||.++++ ......-.+.|+++. +++.++...... ......+.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~~~------el~~~Lk~~~~~--------~~~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFITAP------DLLSKLKAAFDE--------GRLEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEEHH------HHHHHHHHHHhc--------CchHHHHHHHh-hc
Confidence 45799999999999999999998 555444557777654 455555444422 11111222211 12
Q ss_pred eEEEEEecCCCCChhHH--HHHHHhcCC-CCCCCEEEEecCch
Q 042863 106 RYLLVMDDVWNEDPKVW--DKLKSLLSG-GAKGSKILVTTRSN 145 (680)
Q Consensus 106 ~~llvlD~~~~~~~~~~--~~l~~~l~~-~~~~~~iiiTsR~~ 145 (680)
--|||+||+.-.....| +.+...+.. ...... ++||..+
T Consensus 168 ~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~ 209 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLS 209 (254)
T ss_pred CCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecCCC
Confidence 35899999965333332 233333332 222332 6676544
No 264
>PHA02244 ATPase-like protein
Probab=97.27 E-value=0.0018 Score=64.74 Aligned_cols=99 Identities=12% Similarity=0.224 Sum_probs=53.3
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceE
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRY 107 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 107 (680)
.|.|+|++|+|||++|+.+++ ..... |+.++... .. . .+.... ..........+. +.+ ...-
T Consensus 121 PVLL~GppGtGKTtLA~aLA~--~lg~p-----fv~In~l~--d~-~-~L~G~i--~~~g~~~dgpLl----~A~-~~Gg 182 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE--ALDLD-----FYFMNAIM--DE-F-ELKGFI--DANGKFHETPFY----EAF-KKGG 182 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCCC-----EEEEecCh--HH-H-hhcccc--cccccccchHHH----HHh-hcCC
Confidence 588899999999999999987 33222 33332211 10 0 011000 000011111111 112 2346
Q ss_pred EEEEecCCCCChhHHHHHHHhcCC-----------CCCCCEEEEecCc
Q 042863 108 LLVMDDVWNEDPKVWDKLKSLLSG-----------GAKGSKILVTTRS 144 (680)
Q Consensus 108 llvlD~~~~~~~~~~~~l~~~l~~-----------~~~~~~iiiTsR~ 144 (680)
++++|++....+.....+...+.. .+++.++|+|+..
T Consensus 183 vLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 183 LFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred EEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 999999977766666555555531 1357788888875
No 265
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00053 Score=61.89 Aligned_cols=34 Identities=29% Similarity=0.608 Sum_probs=25.4
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhh-hcCCcEEE
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVE-EHFELKIW 61 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 61 (680)
-|.|+|++|+||||||++++...... -.++..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48999999999999999999843332 23455555
No 266
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.016 Score=53.61 Aligned_cols=178 Identities=22% Similarity=0.196 Sum_probs=94.0
Q ss_pred CchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMT 75 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (680)
|-++++++|.+.++-+.. -+=..++-+.++|++|.|||-||+.+++. ....|+.++.. ++..
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----elvq 219 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----ELVQ 219 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----HHHH
Confidence 346677777776653321 11255778999999999999999999872 22335555542 2222
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHH-HhCCceEEEEEecCCCC-----------ChhHHHH---HHHhcCCC--CCCCEE
Q 042863 76 KIIKSITGQNQGDLDIEQLQRILRV-CLNGKRYLLVMDDVWNE-----------DPKVWDK---LKSLLSGG--AKGSKI 138 (680)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlD~~~~~-----------~~~~~~~---l~~~l~~~--~~~~~i 138 (680)
..+.+- ....+.+-- .-..-+-+|++|+++.. +.+.... +..-+..+ ....+|
T Consensus 220 k~igeg----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 220 KYIGEG----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred HHhhhh----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEE
Confidence 211110 001111111 11234678888887431 1111111 22223322 345678
Q ss_pred EEecCchHHHHhhccCC--CCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhC
Q 042863 139 LVTTRSNKVASVMGTRG--GTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCG 201 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 201 (680)
|++|..-++....-.++ ..+.++.++-+++...++++-...+-.....-.+..+|+++-..+|
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasg 354 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASG 354 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCcc
Confidence 88777654443332222 2356888898888888888776654433333344445554444333
No 267
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.24 E-value=0.0018 Score=61.78 Aligned_cols=54 Identities=20% Similarity=0.084 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC
Q 042863 9 EKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF 68 (680)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (680)
+.+.+.+.. +=..-.++.|+|++|+|||++|.+++. .....-..++|++....+
T Consensus 6 ~~LD~~l~G----Gi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 6 KGLDELLGG----GVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred hHHHHHhcC----CccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCC
Confidence 345555532 113347899999999999999999987 443444567888765544
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.021 Score=56.56 Aligned_cols=167 Identities=11% Similarity=0.090 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcch---h----hhhcCC-cEEEEEeCCcCCHHHHHHHHHH
Q 042863 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQ---R----VEEHFE-LKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++.+...+.. +.-.....++|+.|.||+++|..+++.. . .....+ .+.+++..+
T Consensus 5 ~~~l~~~i~~-----~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g------------- 66 (299)
T PRK07132 5 IKFLDNSATQ-----NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD------------- 66 (299)
T ss_pred HHHHHHHHHh-----CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-------------
Confidence 3445555533 2234566689999999999999998742 0 011111 222332111
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHh--C---CceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhcc
Q 042863 80 SITGQNQGDLDIEQLQRILRVCL--N---GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGT 153 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l--~---~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~ 153 (680)
.....+++...+.+.- . +.+=++|+|+++.........+...+..-+..+.+|++|.+. .+....
T Consensus 67 -------~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI-- 137 (299)
T PRK07132 67 -------KDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI-- 137 (299)
T ss_pred -------CcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH--
Confidence 1122333333333221 1 466688889997777777777888888877777777655444 333222
Q ss_pred CCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 154 RGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 154 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
..+...+++.++++++..+.+.... . .+ +.+..++..++|.-.|+..+
T Consensus 138 ~SRc~~~~f~~l~~~~l~~~l~~~~----~--~~---~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 138 VSRCQVFNVKEPDQQKILAKLLSKN----K--EK---EYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HhCeEEEECCCCCHHHHHHHHHHcC----C--Ch---hHHHHHHHHcCCHHHHHHHH
Confidence 2345789999999999998876531 1 11 34556666666633455443
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.24 E-value=0.0024 Score=57.62 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.4
Q ss_pred EEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC
Q 042863 29 IPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF 68 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (680)
+.|+|++|+|||+++..++. .....-..++|++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 68899999999999999987 433344567888876543
No 270
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0011 Score=70.16 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=87.6
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|-++..++|.+++--..=.+..+-+++..+||+|+|||++|+.+++ ...+.|. -+++.+..+..++-.
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkG------ 482 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKG------ 482 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcc------
Confidence 67788888888887531111234457999999999999999999998 4445442 344555444433210
Q ss_pred cCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCC------CChhHHHHHHHhcCC---------C---CC-CCEE-EEe
Q 042863 82 TGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWN------EDPKVWDKLKSLLSG---------G---AK-GSKI-LVT 141 (680)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~------~~~~~~~~l~~~l~~---------~---~~-~~~i-iiT 141 (680)
+.......-+..+++.++.. +-.+-|+.+|+++- .++. ..+...+.. + +. =|+| +|.
T Consensus 483 HRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPa--sALLElLDPEQNanFlDHYLdVp~DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPA--SALLELLDPEQNANFLDHYLDVPVDLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChH--HHHHHhcChhhccchhhhccccccchhheEEEE
Confidence 01111111233344444432 33456888898832 1111 122222221 1 11 1233 444
Q ss_pred cCchHHHHhhccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 142 TRSNKVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
|-|.-..-.....++.+.|++.+...+|-.++-+++.
T Consensus 560 TAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 4443111111122344789999999999888777666
No 271
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.21 E-value=0.0013 Score=62.15 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=34.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQ 72 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (680)
.-.++.|+|++|+|||+++.+++. ........++|++... .....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~r 55 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPER 55 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHH
Confidence 357999999999999999999987 4334456789999875 44433
No 272
>PRK09183 transposase/IS protein; Provisional
Probab=97.21 E-value=0.0019 Score=62.89 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=52.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
..+.++|++|+|||+||..++. ........+.|++.. .+...+...... ... ...+.+. ....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~--~a~~~G~~v~~~~~~------~l~~~l~~a~~~-----~~~---~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY--EAVRAGIKVRFTTAA------DLLLQLSTAQRQ-----GRY---KTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH--HHHHcCCeEEEEeHH------HHHHHHHHHHHC-----CcH---HHHHHHH-hcCC
Confidence 4688999999999999999976 322222345565432 233222221110 111 1222222 1344
Q ss_pred EEEEEecCCCCCh--hHHHHHHHhcCC-CCCCCEEEEecCch
Q 042863 107 YLLVMDDVWNEDP--KVWDKLKSLLSG-GAKGSKILVTTRSN 145 (680)
Q Consensus 107 ~llvlD~~~~~~~--~~~~~l~~~l~~-~~~~~~iiiTsR~~ 145 (680)
-++|+||+.-... .....+...+.. ...++ +|+||..+
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 6999999964222 222234444432 22344 78888654
No 273
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.21 E-value=0.0037 Score=59.59 Aligned_cols=116 Identities=19% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCchhHHHHHHHHHhc-CCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc--CCcEEEEEeCCcCCHHHHHHHHH
Q 042863 2 IGRDKDREKIIEALMQ-TSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH--FELKIWICISEDFGERQIMTKII 78 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~-~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (680)
+|..-..+.|...+.. .++..+.++-++.+||.+|.||.-+++.+++... +.. -+.|-.......+.-..-....
T Consensus 85 fGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~-~~Gl~S~~V~~fvat~hFP~~~~ie~Y- 162 (344)
T KOG2170|consen 85 FGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY-RGGLRSPFVHHFVATLHFPHASKIEDY- 162 (344)
T ss_pred hchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH-hccccchhHHHhhhhccCCChHHHHHH-
Confidence 4555555555555553 2335577899999999999999999999998521 211 1111111111111111111111
Q ss_pred HHhcCCCCCCcCHHHHHHHHHHHh-CCceEEEEEecCCCCChhHHHHHHHhcCC
Q 042863 79 KSITGQNQGDLDIEQLQRILRVCL-NGKRYLLVMDDVWNEDPKVWDKLKSLLSG 131 (680)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlD~~~~~~~~~~~~l~~~l~~ 131 (680)
.+++..++.... +-.+-|+|||+++-..++.++.+..++..
T Consensus 163 ------------k~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 163 ------------KEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred ------------HHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 122333333332 34678999999988888888998888873
No 274
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.20 E-value=0.0018 Score=65.08 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=53.3
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcC-Cc-EEEEEeC-CcCCHHHHHHHHHHHhcCCCCCCcC-----HH-HHHHHH
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHF-EL-KIWICIS-EDFGERQIMTKIIKSITGQNQGDLD-----IE-QLQRIL 98 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-----~~-~~~~~~ 98 (680)
-+.|+|++|+|||||++++++ .+.... +. ++|+-+. ...++.++++.+...+.....+... .. .+.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999988 444433 22 2454443 4556677788887776644322211 11 111222
Q ss_pred HHHh-CCceEEEEEecCC
Q 042863 99 RVCL-NGKRYLLVMDDVW 115 (680)
Q Consensus 99 ~~~l-~~~~~llvlD~~~ 115 (680)
.++. .+++++||+|++.
T Consensus 213 e~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHcCCCEEEEEeCcH
Confidence 2222 5789999999993
No 275
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00058 Score=60.97 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=15.7
Q ss_pred cCCCCCcEEecCCccccccCcccccccCcccEEEeccccc
Q 042863 451 CELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQK 490 (680)
Q Consensus 451 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 490 (680)
..++.|.+|.+++|.+...-|.--..+++|..|.+.+|++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3444444444444433322222222233344444444443
No 276
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.18 E-value=0.0008 Score=60.54 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCH
Q 042863 29 IPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGE 70 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (680)
+.|.|++|+|||++|.+++.. ....++|+......+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH
Confidence 688999999999999999863 2235677766655544
No 277
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.17 E-value=0.0008 Score=66.76 Aligned_cols=82 Identities=21% Similarity=0.121 Sum_probs=54.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC-----CCCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ-----NQGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~ 100 (680)
-+++-|+|++|+||||||.+++. .....-..++|++..+..++. .+..++.+ ...+.+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 46889999999999999999987 334445568899887766543 23333322 1123345666666655
Q ss_pred HhCC-ceEEEEEecC
Q 042863 101 CLNG-KRYLLVMDDV 114 (680)
Q Consensus 101 ~l~~-~~~llvlD~~ 114 (680)
..+. ..-+||+|-+
T Consensus 128 li~s~~~~lIVIDSv 142 (325)
T cd00983 128 LVRSGAVDLIVVDSV 142 (325)
T ss_pred HHhccCCCEEEEcch
Confidence 5543 4558899987
No 278
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.16 E-value=0.00042 Score=62.60 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=61.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhh-hcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVE-EHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
.++.+.||.|+|||.+|+.++. .+. ......+-++++...........+-+.++.. ..... . ..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~---~~~v~-------~---~~ 68 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSP---PGYVG-------A---EE 68 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHT---TCHHH-------H---HH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhcc---cceee-------c---cc
Confidence 5788999999999999999998 444 4455677777776555221111111111111 00000 0 01
Q ss_pred eEEEEEecCCCCCh-----------hHHHHHHHhcCCC-----------CCCCEEEEecCchH
Q 042863 106 RYLLVMDDVWNEDP-----------KVWDKLKSLLSGG-----------AKGSKILVTTRSNK 146 (680)
Q Consensus 106 ~~llvlD~~~~~~~-----------~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~ 146 (680)
.-+|++|+++-..+ ..++.+...+... -.++.+|.||.-..
T Consensus 69 ~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 69 GGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 12999999988777 7677776665421 13444666776543
No 279
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.16 E-value=0.0031 Score=69.91 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=80.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
++-+.++|++|.|||++|+.++. +.... .+.++.+. .. .. . .......+...+.......
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~--~~~~~---f~~is~~~------~~-~~---~-----~g~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAG--EAKVP---FFTISGSD------FV-EM---F-----VGVGASRVRDMFEQAKKAA 244 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HcCCC---EEEEehHH------hH-Hh---h-----hcccHHHHHHHHHHHHhcC
Confidence 45699999999999999999987 33222 22222221 00 00 0 0112223333344444456
Q ss_pred eEEEEEecCCCCC----------hh----HHHHHHHhcCCC--CCCCEEEEecCchHHHHhhccC-CC-CCceeCCCCCh
Q 042863 106 RYLLVMDDVWNED----------PK----VWDKLKSLLSGG--AKGSKILVTTRSNKVASVMGTR-GG-TTGYNLQGLPL 167 (680)
Q Consensus 106 ~~llvlD~~~~~~----------~~----~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~ 167 (680)
+++|++|+++... .. ....+...+... ..+..+|.||..+......-.+ ++ .+.+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 7899999984420 00 112222223322 2244556677766533322221 11 25678888888
Q ss_pred hhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC
Q 042863 168 EDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG 202 (680)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 202 (680)
++..++++....+........ ...+++.+.|
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 899999988775543222211 2456666655
No 280
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.0026 Score=58.89 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCC---CCCcCHHHHH-HHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQN---QGDLDIEQLQ-RILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~~~ 100 (680)
|++++++|+.|+||||.+.+++... ...-..+..++..... ...+-++..++.++.+. ....+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999999999843 3334457777766543 23355666777776442 2222344433 34444
Q ss_pred HhCCceEEEEEecCCC
Q 042863 101 CLNGKRYLLVMDDVWN 116 (680)
Q Consensus 101 ~l~~~~~llvlD~~~~ 116 (680)
.-.++.=+|++|-...
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3333445888897643
No 281
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.15 E-value=0.003 Score=60.56 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=34.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcC------CcEEEEEeCCcCCHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF------ELKIWICISEDFGERQ 72 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (680)
.-.++.|+|++|+|||++|.+++.. ..... ..++|++....++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~r 69 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPER 69 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHH
Confidence 3468999999999999999999873 22223 5688998876655433
No 282
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.11 E-value=0.0067 Score=59.48 Aligned_cols=130 Identities=23% Similarity=0.392 Sum_probs=73.3
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhh-hhcCCcEEEEE----eCC------cCCHH
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRV-EEHFELKIWIC----ISE------DFGER 71 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~----~~~------~~~~~ 71 (680)
+|..+..-...+|.. .....|.+.|.||.|||-||..+.-..-. ++.|.-++-.- +.+ +...+
T Consensus 228 prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 455565555666644 56789999999999999999776543222 34454333221 111 11111
Q ss_pred ------HHHHHHHHHhcCCCCCCcCHHHHHHHHHH---------HhCCc---eEEEEEecCCCCChhHHHHHHHhcCCCC
Q 042863 72 ------QIMTKIIKSITGQNQGDLDIEQLQRILRV---------CLNGK---RYLLVMDDVWNEDPKVWDKLKSLLSGGA 133 (680)
Q Consensus 72 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~l~~~---~~llvlD~~~~~~~~~~~~l~~~l~~~~ 133 (680)
+.+.+-++.+....... ...+...+.+ .++++ +.++|+|+.++-.+ .++...+.+.+
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G 376 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAG 376 (436)
T ss_pred hccchHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhcc
Confidence 11222233333322111 1122222111 23454 35999999998877 56666788889
Q ss_pred CCCEEEEecC
Q 042863 134 KGSKILVTTR 143 (680)
Q Consensus 134 ~~~~iiiTsR 143 (680)
.|++|+.|--
T Consensus 377 ~GsKIVl~gd 386 (436)
T COG1875 377 EGSKIVLTGD 386 (436)
T ss_pred CCCEEEEcCC
Confidence 9999988764
No 283
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.11 E-value=0.0051 Score=65.97 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchh------hhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQR------VEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|....++++.+.+...+ .....|.|+|++|.||+.+|+.+.+... -...-...+-++|..-. +..+
T Consensus 221 iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~--e~ll 294 (538)
T PRK15424 221 LLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA--ESLL 294 (538)
T ss_pred eeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC--hhhH
Confidence 4788888888888887643 3345799999999999999999987310 11111234455665432 2222
Q ss_pred HHHHHHhcCCCCCCcC-HH--HHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEE
Q 042863 75 TKIIKSITGQNQGDLD-IE--QLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILV 140 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~-~~--~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iii 140 (680)
. .++++....... .. .....+. ....=.|+||++..........+..++... ....|+|.
T Consensus 295 e---seLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIa 368 (538)
T PRK15424 295 E---AELFGYEEGAFTGSRRGGRAGLFE---IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 368 (538)
T ss_pred H---HHhcCCccccccCccccccCCchh---ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEE
Confidence 2 222222111000 00 0000111 122345889999887777777777776542 12347777
Q ss_pred ecCchHHHH--------hhccCCCCCceeCCCCChh
Q 042863 141 TTRSNKVAS--------VMGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 141 TsR~~~~~~--------~~~~~~~~~~~~l~~l~~~ 168 (680)
+|....... ...+.-....+.+|||.+.
T Consensus 369 at~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR 404 (538)
T PRK15424 369 ATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRER 404 (538)
T ss_pred ecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhc
Confidence 765332110 0111112356889999773
No 284
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0087 Score=60.69 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=84.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
.|--.+|||||.|||+++.++|+- . .|+ |+=+.++...+-.+ ++.++... ..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~--L--~yd-IydLeLt~v~~n~d-Lr~LL~~t----------------------~~ 286 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANY--L--NYD-IYDLELTEVKLDSD-LRHLLLAT----------------------PN 286 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhh--c--CCc-eEEeeeccccCcHH-HHHHHHhC----------------------CC
Confidence 366789999999999999888872 1 222 33344444333333 44444433 34
Q ss_pred eEEEEEecCCCC------------------ChhHHHHHHHhcC---CCCCCCE-EEEecCchHHHHhhccC-CCC-Ccee
Q 042863 106 RYLLVMDDVWNE------------------DPKVWDKLKSLLS---GGAKGSK-ILVTTRSNKVASVMGTR-GGT-TGYN 161 (680)
Q Consensus 106 ~~llvlD~~~~~------------------~~~~~~~l~~~l~---~~~~~~~-iiiTsR~~~~~~~~~~~-~~~-~~~~ 161 (680)
+-+||++|++.. ....+..+..++. ....+-| ||+||....-...+-.+ ++. -.+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 567777777432 0012222333322 2222334 56677755422222221 222 2477
Q ss_pred CCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhc
Q 042863 162 LQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLY 215 (680)
Q Consensus 162 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~ 215 (680)
+.-=+.+....|+.++.+.+. .+ .++.+|.+...+.-+.=+.++..+.
T Consensus 367 mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHh
Confidence 888888899999999885543 22 3344555555555444445555553
No 285
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.10 E-value=0.00092 Score=66.29 Aligned_cols=84 Identities=19% Similarity=0.139 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC-----CCCCcCHHHHHHHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ-----NQGDLDIEQLQRILR 99 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~ 99 (680)
.-+++.|+|++|+||||||.+++. .....-..++|++..+..+.. .++.++.+ ...+...++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 347899999999999999999887 333444567899877655543 23444322 112234566666665
Q ss_pred HHhC-CceEEEEEecCC
Q 042863 100 VCLN-GKRYLLVMDDVW 115 (680)
Q Consensus 100 ~~l~-~~~~llvlD~~~ 115 (680)
...+ +..-+||+|.+.
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5553 345689999873
No 286
>PRK09354 recA recombinase A; Provisional
Probab=97.10 E-value=0.0019 Score=64.65 Aligned_cols=83 Identities=19% Similarity=0.117 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC-----CCCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ-----NQGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~ 100 (680)
-+++-|+|++|+||||||.+++. .....-..++|++..+.++.. .++.++.+ ...+.+.++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 47889999999999999999987 333445678899988766653 33444322 1123345666666666
Q ss_pred HhCC-ceEEEEEecCC
Q 042863 101 CLNG-KRYLLVMDDVW 115 (680)
Q Consensus 101 ~l~~-~~~llvlD~~~ 115 (680)
..+. ..-+||+|-+.
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 5543 45589999873
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.09 E-value=0.0029 Score=61.02 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC------------------
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN------------------ 85 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------ 85 (680)
..-.++.|+|++|+|||+++.+++. .....-..++|++.... +..+.+++ ..++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~--~~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVY--GALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHH--HHHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 3456899999999999999999986 33233456889888643 34443332 2222110
Q ss_pred --CCCcCHHHHHHHHHHHhCC-ceEEEEEecCC
Q 042863 86 --QGDLDIEQLQRILRVCLNG-KRYLLVMDDVW 115 (680)
Q Consensus 86 --~~~~~~~~~~~~~~~~l~~-~~~llvlD~~~ 115 (680)
....+.+++...+.+.... +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334555666666543 55689999874
No 288
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.07 E-value=0.0011 Score=60.64 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC 63 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 63 (680)
...+|++.|++|+||||+|+.++. .....+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 346899999999999999999988 5555566666664
No 289
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.05 E-value=0.018 Score=56.37 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred EEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhcc------------CCCCCceeCCCCChhhHHHHH
Q 042863 107 YLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGT------------RGGTTGYNLQGLPLEDCLSLF 174 (680)
Q Consensus 107 ~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~------------~~~~~~~~l~~l~~~~~~~l~ 174 (680)
=++++|++|-.|.+.+..+...+-..-.+. ||++|. +.......+ .++.-.+...|.+++|-.+++
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse~aPI-ii~AtN-RG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESELAPI-IILATN-RGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcccCcE-EEEEcC-CceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 488999998888888877777766654343 444433 221111111 012234778899999999999
Q ss_pred HHHhcccCCCCCch
Q 042863 175 MKCAFKEERDKHPN 188 (680)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (680)
+.++...+...+++
T Consensus 371 ~iRa~ee~i~l~~~ 384 (450)
T COG1224 371 RIRAKEEDIELSDD 384 (450)
T ss_pred HHhhhhhccccCHH
Confidence 99997666665543
No 290
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.04 E-value=0.0007 Score=45.21 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=8.3
Q ss_pred CcccccccCcccEEEeccccc
Q 042863 470 LPKDIRYLVSLRVFEVTTKQK 490 (680)
Q Consensus 470 ~~~~~~~l~~L~~L~l~~~~~ 490 (680)
+|..++++++|+.|++++|++
T Consensus 16 l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 16 LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp HGGHGTTCTTSSEEEETSSCC
T ss_pred cCchHhCCCCCCEEEecCCCC
Confidence 333333444444444444433
No 291
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.03 E-value=0.0026 Score=64.79 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=68.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|++++...+...+... +.+.+.|++|+|||+||+.+++ ..... .+++.+.....+.++.....-.
T Consensus 26 ~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 26 VVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcCchhHh
Confidence 467888888887777652 3699999999999999999998 44433 4566676666665544433322
Q ss_pred hcCCCCCCcCHHHHHHHHHH-HhCCceEEEEEecCCCCChhHHHHHHHhcCC
Q 042863 81 ITGQNQGDLDIEQLQRILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSLLSG 131 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~ 131 (680)
........ ...... ...+.+.++++|++....+.....+...+..
T Consensus 93 ~~~~~~~~------~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 93 ALLLEPGE------FRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhccCCe------EEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 21100000 000000 0011115999999988887777777666654
No 292
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.02 E-value=0.0041 Score=55.19 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCC-CCCCCEEEEecCchHHHHhhcc
Q 042863 92 EQLQRILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSG-GAKGSKILVTTRSNKVASVMGT 153 (680)
Q Consensus 92 ~~~~~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~-~~~~~~iiiTsR~~~~~~~~~~ 153 (680)
++..-.+.+.+-+++-+++-|+-.. -|+..-..++..+.. ...|..|+++|-+..+...+..
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 3444566677778899999996522 344444445555554 3458899999999988877654
No 293
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.012 Score=61.47 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC-HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG-ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
.++++++|++|+||||++..++...........+.+++...... ....+....+.++.+.....+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46899999999999999999887322112334577777654321 11223333444444433334455555555543 2
Q ss_pred ceEEEEEecCCC--CChhHHHHHHHhcC
Q 042863 105 KRYLLVMDDVWN--EDPKVWDKLKSLLS 130 (680)
Q Consensus 105 ~~~llvlD~~~~--~~~~~~~~l~~~l~ 130 (680)
..-+||+|.... .+......+..++.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 346888997633 34444455555555
No 294
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.01 E-value=0.0043 Score=59.95 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=37.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhc----CCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH----FELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
..-.++.|+|++|+|||++|.+++........ -..++|++....+... -+.+++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~-rl~~~~~~ 76 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE-RLVQIAER 76 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHH-HHHHHHHH
Confidence 34478999999999999999999853222221 2578999987765543 33334433
No 295
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.01 E-value=0.0013 Score=61.07 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN 85 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (680)
++.+.+...+.. ..+++.|.|+||.|||++++.+... +...-..++++.... .....+....+..
T Consensus 5 ~Q~~a~~~~l~~-------~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~apT~-----~Aa~~L~~~~~~~- 69 (196)
T PF13604_consen 5 EQREAVRAILTS-------GDRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLAPTN-----KAAKELREKTGIE- 69 (196)
T ss_dssp HHHHHHHHHHHC-------TCSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEESSH-----HHHHHHHHHHTS--
T ss_pred HHHHHHHHHHhc-------CCeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEECCcH-----HHHHHHHHhhCcc-
Confidence 445555555543 2358889999999999999998873 333323344443222 2233333333211
Q ss_pred CCCcCHHHHHHHHHHHh------CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEec
Q 042863 86 QGDLDIEQLQRILRVCL------NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTT 142 (680)
Q Consensus 86 ~~~~~~~~~~~~~~~~l------~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTs 142 (680)
...++.........- ..+.-+||+|++.-.+...+..+....... ++++|+.-
T Consensus 70 --a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~--~~klilvG 128 (196)
T PF13604_consen 70 --AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKS--GAKLILVG 128 (196)
T ss_dssp --EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred --hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhc--CCEEEEEC
Confidence 011111000000000 123359999999777766667776666663 56666544
No 296
>PRK14974 cell division protein FtsY; Provisional
Probab=97.01 E-value=0.0073 Score=60.69 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCC---CCcCHHH-HHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQ---GDLDIEQ-LQRIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~ 98 (680)
.++.++.+.|++|+||||++..++. .....-..+..++..... .....+...+..++.+.. ...+... +...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 3478999999999999999999987 333332235455443221 122334455566553321 1223332 23333
Q ss_pred HHHhCCceEEEEEecCCCC--ChhHHHHHHHh
Q 042863 99 RVCLNGKRYLLVMDDVWNE--DPKVWDKLKSL 128 (680)
Q Consensus 99 ~~~l~~~~~llvlD~~~~~--~~~~~~~l~~~ 128 (680)
........-+|++|..... +...++.+..+
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 3322222339999998654 33344444444
No 297
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.011 Score=59.54 Aligned_cols=104 Identities=10% Similarity=0.030 Sum_probs=63.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC-HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG-ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL 102 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 102 (680)
...+++.++|+.|+||||++..++.. ....-..+.++++..... ...-+......++.+.....+.+++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 44689999999999999999999873 333333577777765433 233445555555544333446666666665543
Q ss_pred C-CceEEEEEecCCC--CChhHHHHHHHhc
Q 042863 103 N-GKRYLLVMDDVWN--EDPKVWDKLKSLL 129 (680)
Q Consensus 103 ~-~~~~llvlD~~~~--~~~~~~~~l~~~l 129 (680)
. +..-+|++|-... .+....+.+..+.
T Consensus 282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred hcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 2 3456888998854 2333444444443
No 298
>PRK07261 topology modulation protein; Provisional
Probab=96.99 E-value=0.0018 Score=58.72 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.|+|+|++|+||||||++++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999863
No 299
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.007 Score=56.17 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=89.4
Q ss_pred CchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMT 75 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (680)
|-+++++++.+.+--+.+ -+=..++-|.+|||+|.|||-+|++.+. +....| +.+.. -
T Consensus 175 GldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTF-----LKLAg--------P 239 (424)
T KOG0652|consen 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATF-----LKLAG--------P 239 (424)
T ss_pred cHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchH-----HHhcc--------h
Confidence 557788888777643221 1124567799999999999999999886 333332 11111 0
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHh-CCceEEEEEecCCCC-----------ChhHHH---HHHHhcCCCCC--CCEE
Q 042863 76 KIIKSITGQNQGDLDIEQLQRILRVCL-NGKRYLLVMDDVWNE-----------DPKVWD---KLKSLLSGGAK--GSKI 138 (680)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlD~~~~~-----------~~~~~~---~l~~~l~~~~~--~~~i 138 (680)
+++..+ ..+-+.+++..-.+. ...+.+|++|+++.. +.+... .+..-+..+.+ ..+|
T Consensus 240 QLVQMf------IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKv 313 (424)
T KOG0652|consen 240 QLVQMF------IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKV 313 (424)
T ss_pred HHHhhh------hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEE
Confidence 111111 111222333333333 345789999987321 111111 12223444433 4567
Q ss_pred EEecCchHHHHhh--ccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC
Q 042863 139 LVTTRSNKVASVM--GTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG 202 (680)
Q Consensus 139 iiTsR~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 202 (680)
|..|..-.+.... +..--.+.|+.+.-.++....+++-.+.+-....+-..+ ++++.+++
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfe----ELaRsTdd 375 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFE----ELARSTDD 375 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHH----HHhhcccc
Confidence 7666544332221 111112557777667666677777666655555544444 44444443
No 300
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.98 E-value=0.009 Score=71.05 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..++-|.++||+|.|||.||+++|.+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh
Confidence 44678999999999999999999983
No 301
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0069 Score=65.61 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=86.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..++.+.++|++|.|||.||+.++. ..... |+.+... . +..+. ...+...+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~-----fi~v~~~----~----l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSR-----FISVKGS----E----LLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCe-----EEEeeCH----H----Hhccc-----cchHHHHHHHHHHHHHc
Confidence 4566899999999999999999998 33333 3332221 1 11110 01112223333344445
Q ss_pred CceEEEEEecCCC-------CC----hhHHHHHHHhcCCC--CCCCEEEEecCchHHHHhhccC-CC-CCceeCCCCChh
Q 042863 104 GKRYLLVMDDVWN-------ED----PKVWDKLKSLLSGG--AKGSKILVTTRSNKVASVMGTR-GG-TTGYNLQGLPLE 168 (680)
Q Consensus 104 ~~~~llvlD~~~~-------~~----~~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~ 168 (680)
..+++|++|+++. .. .....++...+... ..++.+|-+|..+........+ ++ ...+.+++-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7789999999833 11 12334444455432 3344455566555433322111 12 246789999999
Q ss_pred hHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC
Q 042863 169 DCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG 202 (680)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 202 (680)
+..+.|........... ..+-....+++.+.|
T Consensus 414 ~r~~i~~~~~~~~~~~~--~~~~~~~~l~~~t~~ 445 (494)
T COG0464 414 ERLEIFKIHLRDKKPPL--AEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHhcccCCcc--hhhhhHHHHHHHhcC
Confidence 99999999886443321 112233556665555
No 302
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0079 Score=64.18 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=94.0
Q ss_pred CchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (680)
|.+++.+++.+.++...+ -+..-++-|.++||+|.|||.||++++- ..... |.+.+... +-+
T Consensus 154 G~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAg--EA~VP-----Ff~iSGS~-----FVe 221 (596)
T COG0465 154 GVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAGVP-----FFSISGSD-----FVE 221 (596)
T ss_pred CcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhc--ccCCC-----ceeccchh-----hhh
Confidence 566666666665543321 1235578899999999999999999998 33333 23222211 111
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC----------h----hHHHHHHHhcCCCC--CCCEEEE
Q 042863 77 IIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED----------P----KVWDKLKSLLSGGA--KGSKILV 140 (680)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~----------~----~~~~~l~~~l~~~~--~~~~iii 140 (680)
+. .......+.....+..++-++++++|.++.-. . ..+.++.-.+..+. .+..|+-
T Consensus 222 mf--------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 222 MF--------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hh--------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 11 11223334445555556678999999773310 0 13344555555554 3444444
Q ss_pred ecCchHHHHhhccCC-C-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 141 TTRSNKVASVMGTRG-G-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 141 TsR~~~~~~~~~~~~-~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
.|..+++....-.++ + .+.+.++.-+-....++++-.+........-.. ..|++.+-|.-
T Consensus 294 aTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfs 355 (596)
T COG0465 294 ATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFS 355 (596)
T ss_pred cCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcc
Confidence 555454443332222 2 234666666656677777755533322222222 23666666644
No 303
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.0025 Score=60.79 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|.+.+++|.+.+... ..+.+.+|+|.|.+|+||||+|++++.
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5788889999988762 345689999999999999999999998
No 304
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.95 E-value=0.00012 Score=60.88 Aligned_cols=98 Identities=27% Similarity=0.296 Sum_probs=74.6
Q ss_pred hhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhh
Q 042863 371 DFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAI 450 (680)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 450 (680)
+....+....+|...++++|. ...++++.-..++.++.|+|.+|.++.+|..+..++.|+.|+++.|+ ....|..+
T Consensus 44 davy~l~~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 44 DAVYMLSKGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HHHHHHhCCceEEEEecccch---hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 344556667778888998886 34445555667889999999999999999999999999999999885 55566667
Q ss_pred cCCCCCcEEecCCccccccCccc
Q 042863 451 CELQSLQTLNLEECLELEELPKD 473 (680)
Q Consensus 451 ~~l~~L~~L~l~~~~~~~~~~~~ 473 (680)
..+.+|-.|+..+|. ...+|..
T Consensus 120 ~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHhHHHhcCCCCc-cccCcHH
Confidence 778888888877763 4455544
No 305
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.91 E-value=0.00069 Score=71.21 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=41.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
|+|-++.++++...|.....+.+...++++++||+|+|||+||+.+++.
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 5899999999999995544345566789999999999999999999984
No 306
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.01 Score=60.80 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=62.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhh--hcCCcEEEEEeCCcCCHH-HHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVE--EHFELKIWICISEDFGER-QIMTKIIKSITGQNQGDLDIEQLQRILRV 100 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (680)
..++++.++|+.|+||||.+..++...... ..-..+..+++....... .-+...++.++.+.....+.+.+...+.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346899999999999999999998743322 122346566665432222 22444445455443334455555555555
Q ss_pred HhCCceEEEEEecCCCCC--hhHHHHHHHhcCCC
Q 042863 101 CLNGKRYLLVMDDVWNED--PKVWDKLKSLLSGG 132 (680)
Q Consensus 101 ~l~~~~~llvlD~~~~~~--~~~~~~l~~~l~~~ 132 (680)
. ...-+|++|...... ...+..+..++...
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 3 345689999885532 22334455555443
No 307
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.90 E-value=0.0061 Score=68.27 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.....+ .....|.|+|++|+||+++|+.+.+.. ...-...+.++|..... ..+.. +
T Consensus 327 l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~~-~~~~~----e 395 (638)
T PRK11388 327 MPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYPD-EALAE----E 395 (638)
T ss_pred eEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCCh-HHHHH----H
Confidence 3577777887777777643 233458999999999999999998631 11222345566665331 22222 2
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHHHH
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKVAS 149 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~~~ 149 (680)
++........ ...... .-....-.|+||++..........+..++.... ..++||.||.... ..
T Consensus 396 lfg~~~~~~~-~~~~g~---~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l-~~ 470 (638)
T PRK11388 396 FLGSDRTDSE-NGRLSK---FELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL-AM 470 (638)
T ss_pred hcCCCCcCcc-CCCCCc---eeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH-HH
Confidence 2221100000 000000 001223468999998877777777777664321 1456777665432 11
Q ss_pred hhc---------cCCCCCceeCCCCChh
Q 042863 150 VMG---------TRGGTTGYNLQGLPLE 168 (680)
Q Consensus 150 ~~~---------~~~~~~~~~l~~l~~~ 168 (680)
... +.-....+.+|||.+.
T Consensus 471 ~~~~~~f~~dL~~~l~~~~i~lPpLreR 498 (638)
T PRK11388 471 LVEQNRFSRQLYYALHAFEITIPPLRMR 498 (638)
T ss_pred HHhcCCChHHHhhhhceeEEeCCChhhh
Confidence 111 0011245788998875
No 308
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.89 E-value=0.015 Score=60.71 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=50.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC-HHHHHHHHHHHhcCCCCC---CcCHHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG-ERQIMTKIIKSITGQNQG---DLDIEQLQRILR 99 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~ 99 (680)
..+.++.++|++|+||||+|..++. ........+..+++..... ..+.+..+...++.+... ..+...+.....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4578999999999999999999997 4433323455565543221 223344555555433221 123333333323
Q ss_pred HHhCCceEEEEEecCC
Q 042863 100 VCLNGKRYLLVMDDVW 115 (680)
Q Consensus 100 ~~l~~~~~llvlD~~~ 115 (680)
+.+++. -+||+|...
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 578888773
No 309
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.89 E-value=0.011 Score=53.96 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=47.1
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCC---CCCCcCHHHHH-HHHHHHh
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQ---NQGDLDIEQLQ-RILRVCL 102 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~---~~~~~~~~~~~-~~~~~~l 102 (680)
++.+.|++|+||||+++.++. .....-..+..+++.... ...+.+.......+.+ .....+..++. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999987 444433346666655422 2223333333333311 11223444433 3333333
Q ss_pred CCceEEEEEecCCC
Q 042863 103 NGKRYLLVMDDVWN 116 (680)
Q Consensus 103 ~~~~~llvlD~~~~ 116 (680)
....-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 44444666887744
No 310
>PHA00729 NTP-binding motif containing protein
Probab=96.86 E-value=0.0057 Score=57.11 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+...++|+|++|+|||+||..+++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999988
No 311
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.85 E-value=0.0069 Score=60.11 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=56.7
Q ss_pred EEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH------HHHh----hccCCCCCceeCCCCChhhHHHHHHH
Q 042863 107 YLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK------VASV----MGTRGGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 107 ~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~------~~~~----~~~~~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
=++++|++|=.|.+.+..+...+...-.+..|+.|.|--. .... ....++.-.+...|.+.+|..+++.-
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred ceEEecchhhccHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence 4899999998888888888777776554543444443211 0000 01112335588999999999999999
Q ss_pred HhcccCCCCCchHHHHHHHHHHhhCCChhHHHHH
Q 042863 177 CAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
++..++...+++..+...+|...+ ++-+|+.++
T Consensus 360 R~~~E~v~i~~~al~~L~~ig~~~-SLRYAiqLi 392 (398)
T PF06068_consen 360 RAKEEDVEISEDALDLLTKIGVET-SLRYAIQLI 392 (398)
T ss_dssp HHHHCT--B-HHHHHHHHHHHHHS--HHHHHHCH
T ss_pred hhhhhcCcCCHHHHHHHHHHhhhc-cHHHHHHhh
Confidence 998777766655554445554443 344554443
No 312
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.84 E-value=0.0036 Score=60.76 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=37.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc----CCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH----FELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
.++=|+|++|+|||+|+.+++-....... -..++|++....+....+ .++++..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~ 96 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERF 96 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhcc
Confidence 57889999999999999988754333222 235899998887776654 3455543
No 313
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.83 E-value=0.00083 Score=57.19 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+|+|.|++|+||||+|+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.81 E-value=0.01 Score=57.20 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHH
Q 042863 9 EKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (680)
..+.+.+.. +=..-.++.|.|++|+|||++|.+++. .....-..++|++... ++.++.++
T Consensus 8 ~~LD~~l~G----G~~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 8 PGMDEILHG----GIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HhHHHHhcC----CCcCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 344555543 213457899999999999999999987 3334456688888764 34444443
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.81 E-value=0.019 Score=56.77 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=50.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC------CCcCHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGERQIMTKIIKSITGQNQ------GDLDIEQLQRILR 99 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~ 99 (680)
.++.|.|++|+|||+++.+++. ..... -..++|+++.. ....+...+...+..... ...+.++....+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEE--PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEccc--CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHH
Confidence 5888999999999999999987 33333 45688988765 344555555444322111 1233444444444
Q ss_pred HHhCCceEEEEEecCCC
Q 042863 100 VCLNGKRYLLVMDDVWN 116 (680)
Q Consensus 100 ~~l~~~~~llvlD~~~~ 116 (680)
+... .+.+++.|....
T Consensus 107 ~~~~-~~~l~i~d~~~~ 122 (271)
T cd01122 107 EFEG-TGRLFMYDSFGE 122 (271)
T ss_pred HhcC-CCcEEEEcCCCc
Confidence 4333 344555676643
No 316
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.79 E-value=0.018 Score=55.23 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC---------------------
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ--------------------- 84 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------- 84 (680)
-..+.|.|++|.|||+++.+++.. .......++|++.... ...+... ++.++..
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~~ 94 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEKE 94 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccccc
Confidence 468999999999999999998763 2233456888886443 2332222 2222110
Q ss_pred ---CCCCcCHHHHHHHHHHHhCC---ceEEEEEecCCCC---ChhHHHHHHHhcCC--CCCCCEEEEecC
Q 042863 85 ---NQGDLDIEQLQRILRVCLNG---KRYLLVMDDVWNE---DPKVWDKLKSLLSG--GAKGSKILVTTR 143 (680)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~l~~---~~~llvlD~~~~~---~~~~~~~l~~~l~~--~~~~~~iiiTsR 143 (680)
.....+.+++...+.+..+. +.-.+|+|.+... ++.....+...+.. ...++.+++|+.
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 95 DEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred cccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 00123566666666665543 3457889987432 22222221111111 124777888875
No 317
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0034 Score=62.64 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=55.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC-----CCcCHHHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ-----GDLDIEQLQRILRVC 101 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~ 101 (680)
.++.|-|.+|||||||..+++. +..... .++|++..+... -.+-.+..++.... .+.+.+.+.+.+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence 5788899999999999999998 666555 789998765432 23333445543221 23455555555555
Q ss_pred hCCceEEEEEecCCC
Q 042863 102 LNGKRYLLVMDDVWN 116 (680)
Q Consensus 102 l~~~~~llvlD~~~~ 116 (680)
.++-++|+|-++.
T Consensus 167 --~~p~lvVIDSIQT 179 (456)
T COG1066 167 --EKPDLVVIDSIQT 179 (456)
T ss_pred --cCCCEEEEeccce
Confidence 6778999998855
No 318
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.78 E-value=0.0069 Score=50.46 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHhcCC-CCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 2 IGRDKDREKIIEALMQTS-SGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+|..-+.+.+.+.+.+.- +..+..+-++.++|++|+|||.+++.+++.
T Consensus 28 ~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 28 FGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 566666666666665422 245677889999999999999999999985
No 319
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.77 E-value=0.012 Score=58.16 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=50.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC-HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG-ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..++++++|+.|+||||++..++........-..+..++...... ..+.+....+.++.+.....+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 467999999999999999999987332221123466777654321 12223333444443333334455555555543 3
Q ss_pred CceEEEEEecC
Q 042863 104 GKRYLLVMDDV 114 (680)
Q Consensus 104 ~~~~llvlD~~ 114 (680)
+ .-+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 357777754
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.76 E-value=0.01 Score=60.75 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=50.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC-----CCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ-----GDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~ 100 (680)
-.++.|.|++|+|||||+.+++. ........++|++.... ..++ ...++.++.... ...+.+++.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 36899999999999999999987 44444456888876542 2222 222344442211 12344554444432
Q ss_pred HhCCceEEEEEecCC
Q 042863 101 CLNGKRYLLVMDDVW 115 (680)
Q Consensus 101 ~l~~~~~llvlD~~~ 115 (680)
.+.-+||+|.++
T Consensus 157 ---~~~~lVVIDSIq 168 (372)
T cd01121 157 ---LKPDLVIIDSIQ 168 (372)
T ss_pred ---cCCcEEEEcchH
Confidence 355678888874
No 321
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.025 Score=61.00 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
..=|.+|||+|.|||-+|+++|-. .. .-|+++-+ .+++...+. .+.+.+.+...+.-...
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKG----PELLNMYVG---------qSE~NVR~VFerAR~A~ 764 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKG----PELLNMYVG---------QSEENVREVFERARSAA 764 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecC----HHHHHHHhc---------chHHHHHHHHHHhhccC
Confidence 345899999999999999999873 22 23555543 233433332 24555666666666788
Q ss_pred eEEEEEecCCC
Q 042863 106 RYLLVMDDVWN 116 (680)
Q Consensus 106 ~~llvlD~~~~ 116 (680)
+++|+||+++.
T Consensus 765 PCVIFFDELDS 775 (953)
T KOG0736|consen 765 PCVIFFDELDS 775 (953)
T ss_pred CeEEEeccccc
Confidence 99999999854
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.76 E-value=0.012 Score=56.35 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
-..+.|.|++|+||||+|.+++.. ..+.-..++|++... +..+..+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~--~~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG--FLQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEeCCC--CHHHHHHHH
Confidence 348999999999999999888773 322334567777443 444555544
No 323
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.059 Score=52.89 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC
Q 042863 5 DKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ 84 (680)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (680)
....+.+.+.+.. +.-+....++| |+||+++|+.++... ....-. .....+.....+.+...-+++
T Consensus 8 ~~~~~~L~~~~~~-----~rl~hAyLf~G--~~G~~~~A~~~A~~l-lC~~~~------~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 8 PKVFQRFQTILEQ-----DRLNHAYLFSG--DFASFEMALFLAQSL-FCEQKE------GVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHc-----CCcceeeeeeC--CccHHHHHHHHHHHH-cCCCCC------CCCCCCCCHHHHHHhcCCCCC
Confidence 4455666666654 23345666778 589999999998631 111000 000011112222222222211
Q ss_pred C------CCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhcc
Q 042863 85 N------QGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGT 153 (680)
Q Consensus 85 ~------~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~ 153 (680)
. .....++++.+...... .+++=++|+|+++.........+...+-.-+.++.+|++|.++ .+...+.
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~- 152 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIK- 152 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHH-
Confidence 0 11233455544333322 3445699999999888888888888887766667677666554 3333333
Q ss_pred CCCCCceeCCCCChhhHHHHHHH
Q 042863 154 RGGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 154 ~~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
.++..+.+++ +.++..+.+..
T Consensus 153 -SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 153 -SRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred -HcceeeeCCC-cHHHHHHHHHH
Confidence 3457788876 66666666653
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.011 Score=60.62 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC-HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG-ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
...++++.|++|+||||++..++........ ..+..+++..... ..+.+...+..++.+.....+...+...+. +
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 3568999999999999999999873322222 2344555443222 223334444444433222222222222222 2
Q ss_pred CceEEEEEecC--CCCChhHHHHHHHhcC
Q 042863 104 GKRYLLVMDDV--WNEDPKVWDKLKSLLS 130 (680)
Q Consensus 104 ~~~~llvlD~~--~~~~~~~~~~l~~~l~ 130 (680)
...-+||+|-. ...+....+.+..++.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 33356889943 2234455555555443
No 325
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.75 E-value=0.0094 Score=53.20 Aligned_cols=118 Identities=16% Similarity=0.063 Sum_probs=67.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEE---EEEeCCcCCHHHHHHHHHHHhcC--C------CCCCcC---HH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKI---WICISEDFGERQIMTKIIKSITG--Q------NQGDLD---IE 92 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~--~------~~~~~~---~~ 92 (680)
..|-|++..|.||||.|...+. +...+--.++ |+...........+..+.-.+.. . .....+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4788899999999999988876 5444333343 44443233444444443111100 0 011111 22
Q ss_pred HHHHHHHHHhCCce-EEEEEecCCC---CChhHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 93 QLQRILRVCLNGKR-YLLVMDDVWN---EDPKVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 93 ~~~~~~~~~l~~~~-~llvlD~~~~---~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
+.....++.+.... -+||||++-. ......+.+..++...+....+|+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 23334444444444 5999999832 233344677788888888889999999873
No 326
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.73 E-value=0.0077 Score=60.17 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=39.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhh----cCCcEEEEEeCCcCCHHHHHHHHHHHhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEE----HFELKIWICISEDFGERQIMTKIIKSIT 82 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (680)
-.++-|+|++|+|||+++.+++....... .-..++|++..+.+.++.+. ++++.++
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 46888999999999999999875323221 12468999988877776654 3455554
No 327
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.70 E-value=0.0021 Score=57.49 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=55.8
Q ss_pred ceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccc--cCcccccccCcccEEEe
Q 042863 408 FLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELE--ELPKDIRYLVSLRVFEV 485 (680)
Q Consensus 408 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l 485 (680)
....+||++|.+..++ .+..++.|++|.+++|.+...-|.....+|+|..|.|.+|++.. ++ ..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 4455666666655332 34556666666666665444444433445666666666654321 11 12344556666666
Q ss_pred cccccccc----ccccCcccccceeecccc
Q 042863 486 TTKQKSLQ----DSGIGCLVSLRCLIISHC 511 (680)
Q Consensus 486 ~~~~~~~~----~~~l~~l~~L~~L~l~~~ 511 (680)
-+|+.+.. .-.+..+++|+.|++..-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66655433 123456677777777653
No 328
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.70 E-value=0.01 Score=56.39 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=71.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC-----cCCHHHHHHHHHHHhcCC------CCCCcCHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE-----DFGERQIMTKIIKSITGQ------NQGDLDIEQLQ 95 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~ 95 (680)
.+++|+|++|+||||+++.+..- .. .-.+.++..... .....+...+++...+.. .+.+.+-.+.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L--~~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL--EE-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC--cC-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 58999999999999999999873 22 223344444322 122334455666666533 23444555555
Q ss_pred H-HHHHHhCCceEEEEEecCCCC-ChhHHHHHHHhcCC--CCCCCEEEEecCchHHHHhh
Q 042863 96 R-ILRVCLNGKRYLLVMDDVWNE-DPKVWDKLKSLLSG--GAKGSKILVTTRSNKVASVM 151 (680)
Q Consensus 96 ~-~~~~~l~~~~~llvlD~~~~~-~~~~~~~l~~~l~~--~~~~~~iiiTsR~~~~~~~~ 151 (680)
+ .+.+.+.-++-++|.|+...+ +...-.++..++.+ ...+...++.|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 4 455667788899999987553 33333444444443 22355566666665554443
No 329
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.02 Score=58.28 Aligned_cols=89 Identities=17% Similarity=0.102 Sum_probs=51.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
..+++++|+.|+||||++.+++...........+.+++..... ...+-+....+.++.+.....+...+...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 4689999999999999999999843222222356666654432 23344444455555443323333333444443 334
Q ss_pred ceEEEEEecCCC
Q 042863 105 KRYLLVMDDVWN 116 (680)
Q Consensus 105 ~~~llvlD~~~~ 116 (680)
. -+|++|....
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 3 5666998844
No 330
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.68 E-value=0.014 Score=53.42 Aligned_cols=117 Identities=20% Similarity=0.142 Sum_probs=62.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhc--CCC------------CCCcCHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSIT--GQN------------QGDLDIE 92 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~------------~~~~~~~ 92 (680)
..++|.|+.|.|||||++.++.... ...+.++++... .......+-+.++ .+. ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~---~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVP---VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEE---HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 4799999999999999999986322 223344443221 1111111111111 111 1122323
Q ss_pred HHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 93 QLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 93 ~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
+.+ -.+.+.+-.++-++++|+... .|....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 322 234455566778889998754 344444555454443323567888888776544
No 331
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.68 E-value=0.013 Score=53.79 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=66.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC--cCCHHHH------HHHHHHHhcCC-----CCCCcCHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE--DFGERQI------MTKIIKSITGQ-----NQGDLDIEQ 93 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~l~~~-----~~~~~~~~~ 93 (680)
.+++|.|+.|.|||||++.++... ....+.++++... ....... ..+++..++.. .....+..+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 489999999999999999998632 2234455553221 1111111 11134444322 123344443
Q ss_pred HH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCC-C-CCEEEEecCchHHH
Q 042863 94 LQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGA-K-GSKILVTTRSNKVA 148 (680)
Q Consensus 94 ~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~-~-~~~iiiTsR~~~~~ 148 (680)
.+ -.+.+.+...+-++++|+... .|....+.+...+.... . +..+|++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 33 344555666778999998754 44555555555554322 1 55688888776544
No 332
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.012 Score=53.49 Aligned_cols=118 Identities=22% Similarity=0.192 Sum_probs=62.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhc--CCCCC--C-------cCHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSIT--GQNQG--D-------LDIEQLQ 95 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~--~-------~~~~~~~ 95 (680)
.+++|.|+.|.|||||++.++.... ...+.++++........ .....+.++ .+... + .+..+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLD--LESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcC--HHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 4899999999999999999987322 23344444321110000 001111111 11100 0 2222222
Q ss_pred -HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 96 -RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 96 -~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
-.+.+.+...+-++++|+-.. .|......+...+.....+..||++|.+.....
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 234445556677999998754 455555555555544333466888887776543
No 333
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.66 E-value=0.012 Score=59.24 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=39.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhh----cCCcEEEEEeCCcCCHHHHHHHHHHHhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEE----HFELKIWICISEDFGERQIMTKIIKSIT 82 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (680)
-.++-|+|++|+|||+|+.+++-...... .-..++|++....+.++.+.. +++.++
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 46788999999999999999975333211 124689999988887776544 455554
No 334
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00024 Score=66.44 Aligned_cols=80 Identities=29% Similarity=0.328 Sum_probs=44.6
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccC--hhhcCCCCCcEEecCCccccccCcc-----ccc
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLP--NAICELQSLQTLNLEECLELEELPK-----DIR 475 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~ 475 (680)
...|+.|++|.|+-|+|+.+ ..+..|++|++|+|..|.+ ..+. .-+.++|+|+.|.|..|...+.-+. .+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 44666777777777766655 3356667777777766532 2221 1244566666666666655544332 234
Q ss_pred ccCcccEEE
Q 042863 476 YLVSLRVFE 484 (680)
Q Consensus 476 ~l~~L~~L~ 484 (680)
.+++|+.|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 455555553
No 335
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.63 E-value=0.0085 Score=64.63 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=80.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+....+++.+.+.... .....|.|.|++|+|||++|+.+.+. ....-...+.+++... +...+ -..
T Consensus 140 lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~--s~~~~~~~i~i~c~~~-~~~~~----~~~ 208 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH--SPRAKAPFIALNMAAI-PKDLI----ESE 208 (469)
T ss_pred ceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc--CCCCCCCeEeeeCCCC-CHHHH----HHH
Confidence 3577777777777775532 33457999999999999999988773 1112223455566543 11111 122
Q ss_pred hcCCCCCCc-CHHHH-HHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHH
Q 042863 81 ITGQNQGDL-DIEQL-QRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~-~~~~~-~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~ 147 (680)
+++...... ..... ...+. ....-.+++|+++.........+..++.... ..++||+||.....
T Consensus 209 lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~ 285 (469)
T PRK10923 209 LFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLE 285 (469)
T ss_pred hcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHH
Confidence 222111000 00000 00000 1112246789998877777777777765421 23478888864321
Q ss_pred H--------HhhccCCCCCceeCCCCChh
Q 042863 148 A--------SVMGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 148 ~--------~~~~~~~~~~~~~l~~l~~~ 168 (680)
. ......-....+.++||.+.
T Consensus 286 ~~~~~~~~~~~L~~~l~~~~i~~PpLreR 314 (469)
T PRK10923 286 QRVQEGKFREDLFHRLNVIRVHLPPLRER 314 (469)
T ss_pred HHHHcCCchHHHHHHhcceeecCCCcccc
Confidence 1 11111112246788888763
No 336
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.019 Score=54.67 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=78.8
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Q 042863 22 ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC 101 (680)
Q Consensus 22 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (680)
....-+-|.++||+|.|||-||++++- ..... |++++.. .++.+... .-+.++..+-+.
T Consensus 162 kR~PwrgiLLyGPPGTGKSYLAKAVAT--EAnST-----FFSvSSS--------DLvSKWmG------ESEkLVknLFem 220 (439)
T KOG0739|consen 162 KRKPWRGILLYGPPGTGKSYLAKAVAT--EANST-----FFSVSSS--------DLVSKWMG------ESEKLVKNLFEM 220 (439)
T ss_pred CCCcceeEEEeCCCCCcHHHHHHHHHh--hcCCc-----eEEeehH--------HHHHHHhc------cHHHHHHHHHHH
Confidence 334468899999999999999999987 32233 3333321 11111111 112233333333
Q ss_pred h-CCceEEEEEecCCC-------CChhHHHHHH-------HhcCCCCCCCEEEEecCchHHHHhhccCCCCCceeCCCCC
Q 042863 102 L-NGKRYLLVMDDVWN-------EDPKVWDKLK-------SLLSGGAKGSKILVTTRSNKVASVMGTRGGTTGYNLQGLP 166 (680)
Q Consensus 102 l-~~~~~llvlD~~~~-------~~~~~~~~l~-------~~l~~~~~~~~iiiTsR~~~~~~~~~~~~~~~~~~l~~l~ 166 (680)
. .+++-+|++|+++. .+.+....+. .-..+...|..|+=.|..+.+....-.+--.+.|.+ ||.
T Consensus 221 ARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLP 299 (439)
T KOG0739|consen 221 ARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLP 299 (439)
T ss_pred HHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCC
Confidence 3 36778999998843 1111111111 112233446656667776644333221101133555 444
Q ss_pred hhhHH-HHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 167 LEDCL-SLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 167 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
+..|+ .+|+-..+...... .....+.+.+++.|.
T Consensus 300 e~~AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 300 EAHARARMFKLHLGDTPHVL---TEQDFKELARKTEGY 334 (439)
T ss_pred cHHHhhhhheeccCCCcccc---chhhHHHHHhhcCCC
Confidence 44444 44555444432222 234557787777774
No 337
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.011 Score=57.22 Aligned_cols=88 Identities=19% Similarity=0.112 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH-hcCC-CCCCcCHHHHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS-ITGQ-NQGDLDIEQLQRILRVC 101 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~~~~~~~~~~~~~~ 101 (680)
..-+++=|+|+.|.||||+|.+++-. ....-..++|++..+.+++.... ++... +..- -..+.+.++....+...
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 34578889999999999999999873 33444478999998888776533 33333 2211 12233444433333333
Q ss_pred h---CCceEEEEEecC
Q 042863 102 L---NGKRYLLVMDDV 114 (680)
Q Consensus 102 l---~~~~~llvlD~~ 114 (680)
. ...--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 2 232458888887
No 338
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.60 E-value=0.024 Score=51.18 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=60.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc---CC---cEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHH-HHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH---FE---LKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQ-RILR 99 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~ 99 (680)
..++|.|+.|.|||||++.++........ ++ .+.++.-........+...+... .....+..+.+ -.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHHHHH
Confidence 47999999999999999999874221111 11 12222111111111222222110 12334443333 3444
Q ss_pred HHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHH
Q 042863 100 VCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVA 148 (680)
Q Consensus 100 ~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~ 148 (680)
+.+-.++-++++|+-.. .|......+...+... +..+|++|.+....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 55556777888998744 3444445555555443 34577777776543
No 339
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.60 E-value=0.0036 Score=61.96 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=44.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
|+|-++.++++...+.+++.+.+.+.+++.+.||.|.||||+|+.+.+
T Consensus 63 ~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 63 FYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988877788899999999999999999999987
No 340
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.57 E-value=0.02 Score=56.08 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCH-HHHHHHHHHHhcCCC---CCCcCHH-HHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGE-RQIMTKIIKSITGQN---QGDLDIE-QLQRIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~---~~~~~~~-~~~~~~ 98 (680)
.+++++.++|++|+||||++..++. .....-..+..+++...... .+-+....+..+... ....+.. .....+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4568999999999999999999987 44444345667766542221 222333444443221 1122332 233444
Q ss_pred HHHhCCceEEEEEecCCC
Q 042863 99 RVCLNGKRYLLVMDDVWN 116 (680)
Q Consensus 99 ~~~l~~~~~llvlD~~~~ 116 (680)
........-++|+|-...
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444334456888997744
No 341
>PRK08233 hypothetical protein; Provisional
Probab=96.55 E-value=0.0071 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..+|+|.|++|+||||+|..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999873
No 342
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.55 E-value=0.0092 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.++|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.044 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+.|.+.|.+|+||||+|+++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46889999999999999999983
No 344
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.53 E-value=0.004 Score=58.07 Aligned_cols=107 Identities=14% Similarity=0.230 Sum_probs=54.0
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceE
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRY 107 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 107 (680)
.+.|.|+.|+||||+++.++. .........++.--.. . + ....-...+..+.....+.....+.++..++..+-
T Consensus 3 lilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~-~--E-~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDP-I--E-FVHESKRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCC-c--c-ccccCccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 689999999999999998876 3333323333332111 0 0 00000000111101111122344566666766778
Q ss_pred EEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch
Q 042863 108 LLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN 145 (680)
Q Consensus 108 llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~ 145 (680)
++++|++. +.+......... ..|..++.|+-..
T Consensus 77 ~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~ 109 (198)
T cd01131 77 VILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTN 109 (198)
T ss_pred EEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCC
Confidence 99999994 444444333322 2244566666444
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.53 E-value=0.026 Score=49.52 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=58.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHH-HHHHHHhCCc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQ-RILRVCLNGK 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~ 105 (680)
.+++|.|+.|.|||||++.++.... ...+.++++... .++- ..+.+..+.+ -.+.+.+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~--~~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGY--FEQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEE--EccCCHHHHHHHHHHHHHhcC
Confidence 4889999999999999999987322 223444443210 0000 0003333322 2344555566
Q ss_pred eEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHH
Q 042863 106 RYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVA 148 (680)
Q Consensus 106 ~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~ 148 (680)
+-++++|+... .|......+...+... +..+|++|.+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 77889998744 4555555665555543 23577777766544
No 346
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.53 E-value=0.0085 Score=61.04 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..++-+.|||+.|.|||.|.-.+++......+ .....-..+.++-+.+.......... ..+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l----~~va~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDPL----PQVADELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCCCccH----HHHHHHHH
Confidence 45788999999999999999999875332111 00111234444433333211111122 23334445
Q ss_pred CceEEEEEecCCCCChhHHHHHHHhcCC-CCCCCEEEEecCc
Q 042863 104 GKRYLLVMDDVWNEDPKVWDKLKSLLSG-GAKGSKILVTTRS 144 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~~~~~~l~~~l~~-~~~~~~iiiTsR~ 144 (680)
+...||.||+++-.|+...--+..++.. +..|..+|.||..
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~ 167 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNR 167 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCC
Confidence 6677999999987777665555555554 3457745555543
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.52 E-value=0.011 Score=53.55 Aligned_cols=118 Identities=14% Similarity=0.042 Sum_probs=67.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE---eCCcCCHHHHHHHHHHHh-----cCC-----CCCCcC--
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC---ISEDFGERQIMTKIIKSI-----TGQ-----NQGDLD-- 90 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l-----~~~-----~~~~~~-- 90 (680)
...|.|+|..|-||||.|...+. +...+--.+..+- ..........+..+- .+ +.. .....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 35899999999999999977776 5444333344333 332233444443321 01 000 011111
Q ss_pred -HHHHHHHHHHHhCCc-eEEEEEecCCC---CChhHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 91 -IEQLQRILRVCLNGK-RYLLVMDDVWN---EDPKVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 91 -~~~~~~~~~~~l~~~-~~llvlD~~~~---~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
..+.....++.+... --+||||++-. ......+.+..++...+....||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233444444444 45999999832 233445778888888888889999999863
No 348
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.52 E-value=0.0059 Score=55.10 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++|.|++|+|||++|..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999986
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.52 E-value=0.0084 Score=58.51 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
.-.++.|.|++|+|||++|.+++. .....-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~--~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAV--TQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEEEEecC
Confidence 346899999999999999999987 3333445688998864
No 350
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.52 E-value=0.011 Score=53.33 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=63.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC--CHHHHHHHHHHHhcCCCCCCcCHHHHH-HHHHHHhC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF--GERQIMTKIIKSITGQNQGDLDIEQLQ-RILRVCLN 103 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~ 103 (680)
..++|.|+.|.|||||.+.++... ....+.++++..... +.....+ +.++-. .+.+..+.+ -.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~--~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV--YQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE--EecCHHHHHHHHHHHHHh
Confidence 489999999999999999998632 223445555432111 1111111 111110 114444333 34445555
Q ss_pred CceEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHH
Q 042863 104 GKRYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVA 148 (680)
Q Consensus 104 ~~~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~ 148 (680)
..+-++++|+... .|......+...+... ..+..+|++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 6678888998754 4555555555555432 2355688888876543
No 351
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.52 E-value=0.018 Score=57.70 Aligned_cols=56 Identities=20% Similarity=0.171 Sum_probs=37.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcC----CcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF----ELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
.-.++.|+|++|+|||+|+..++......... ..++|++....+.... +.+++..+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHc
Confidence 35789999999999999999987632221111 2578999887766664 33444444
No 352
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.011 Score=53.79 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=63.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhc--CCCC---CC--------cCHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSIT--GQNQ---GD--------LDIEQ 93 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~---~~--------~~~~~ 93 (680)
..++|.|+.|.|||||++.++... ....+.++++........ ....+.++ .+.. .. .+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 489999999999999999998632 123444554322111110 11111111 1110 11 23333
Q ss_pred HHH-HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHHH
Q 042863 94 LQR-ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVAS 149 (680)
Q Consensus 94 ~~~-~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~~ 149 (680)
.++ .+.+.+..++-++++|+-.. -|......+...+... ..+..+|++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 332 45556667788999998754 3444545555555432 22566888888776444
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.51 E-value=0.025 Score=51.33 Aligned_cols=112 Identities=19% Similarity=0.250 Sum_probs=60.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcch---hhhhc---C--CcEEEEEeCCcCCHHHHHHHHHHHhcCCC------CCCcCHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQ---RVEEH---F--ELKIWICISEDFGERQIMTKIIKSITGQN------QGDLDIE 92 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~---~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~ 92 (680)
.+++|.|+.|+|||||.+.+.... .+... | ..+.|+. + .+.+..++... ....+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--------q--~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--------Q--LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--------H--HHHHHHcCCCccccCCCcCcCCHH
Confidence 589999999999999999885310 00000 0 0122321 1 34555554321 1223333
Q ss_pred HHH-HHHHHHhCCc--eEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHH
Q 042863 93 QLQ-RILRVCLNGK--RYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVA 148 (680)
Q Consensus 93 ~~~-~~~~~~l~~~--~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~ 148 (680)
+.+ -.+.+.+... +-++++|+... .+......+...+... ..+..||++|.+....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 332 2334444445 67888898744 3444445555544432 2356688888887654
No 354
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.024 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.7
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....|.|..|||+|.|||-.|+++++
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr 406 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELAR 406 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHh
Confidence 45678999999999999999999998
No 355
>PRK05439 pantothenate kinase; Provisional
Probab=96.50 E-value=0.024 Score=56.14 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=47.5
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc--CCcEEEEEeCCcCCHHHHHHHHHHHhcC--CCCCCcCHHHHHHH
Q 042863 22 ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH--FELKIWICISEDFGERQIMTKIIKSITG--QNQGDLDIEQLQRI 97 (680)
Q Consensus 22 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ 97 (680)
..+.+.+|+|.|++|+||||+|+.+.. ..... ...+.-++........+.+.. +.+.. ..+...+.+.+.+.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~ 157 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRF 157 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHH
Confidence 446788999999999999999999887 33322 123444444443322222221 11111 12344567777777
Q ss_pred HHHHhCCce
Q 042863 98 LRVCLNGKR 106 (680)
Q Consensus 98 ~~~~l~~~~ 106 (680)
+....+++.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 777766654
No 356
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.50 E-value=0.038 Score=55.83 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=67.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHH-HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGER-QIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
.+++.++||.|+||||....++..+.....-..+..++.....-.. +-+...++-++.+-....+..++...+... ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-RD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-hc
Confidence 6899999999999998777777633322333457777766544333 334455566666666666777766666654 23
Q ss_pred ceEEEEEecCCC--CChhHHHHHHHhcCCC
Q 042863 105 KRYLLVMDDVWN--EDPKVWDKLKSLLSGG 132 (680)
Q Consensus 105 ~~~llvlD~~~~--~~~~~~~~l~~~l~~~ 132 (680)
. =+|++|-+.. .+....+.+..++...
T Consensus 282 ~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 282 C-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred C-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 3 5677787744 3555666677776655
No 357
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.50 E-value=0.007 Score=61.63 Aligned_cols=48 Identities=29% Similarity=0.448 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHhcC-C-----C--CCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALMQT-S-----S--GESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~-~-----~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|++++.+.+.-.+... . . .....++.+.++|++|+|||++|+.++.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 588999999887777631 0 0 1122357899999999999999999987
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=96.49 E-value=0.028 Score=58.51 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCH-HHHHHHHHHHhcCCC---CCCcCHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGE-RQIMTKIIKSITGQN---QGDLDIEQLQRIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~---~~~~~~~~~~~~~ 98 (680)
..+.++.++|++|+||||++..++. ..... -..+..+++...... .+-+.......+.+. ....++..+....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 4578999999999999999999987 44333 334556665542221 122333444443221 1223444444333
Q ss_pred HHHhCCc-eEEEEEecCC
Q 042863 99 RVCLNGK-RYLLVMDDVW 115 (680)
Q Consensus 99 ~~~l~~~-~~llvlD~~~ 115 (680)
.+..+.. .-++|+|-..
T Consensus 176 ~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 3333333 3377777663
No 359
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.47 E-value=0.0046 Score=54.22 Aligned_cols=37 Identities=27% Similarity=0.150 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEe
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICI 64 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~ 64 (680)
..+|++.|.+|+||||+|+++.+ +.......+.+++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecC
Confidence 35899999999999999999998 66666566777764
No 360
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.015 Score=61.21 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC-HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG-ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
..++.++|+.|+||||++..++...........+..++...... ..+.+....+.++.......+...+...+.+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c-
Confidence 46899999999999999999987322221123455665543221 12223333333333222233444555555443 2
Q ss_pred ceEEEEEecCCC
Q 042863 105 KRYLLVMDDVWN 116 (680)
Q Consensus 105 ~~~llvlD~~~~ 116 (680)
..-+||+|....
T Consensus 428 ~~DLVLIDTaG~ 439 (559)
T PRK12727 428 DYKLVLIDTAGM 439 (559)
T ss_pred cCCEEEecCCCc
Confidence 345888898743
No 361
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.45 E-value=0.016 Score=52.90 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=61.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc--CCHHHHHHHHHHHhc--CCCCC--C-------cCHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED--FGERQIMTKIIKSIT--GQNQG--D-------LDIEQ 93 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~--~~~~~--~-------~~~~~ 93 (680)
..++|.|+.|.|||||++.++... ....+.++++.... ..... ..+.++ .+... . .+..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE----LGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHH----HHhheEEECCCCccccCcHHHHCcCHHH
Confidence 489999999999999999998632 22234444432111 11111 111111 11110 0 22222
Q ss_pred HH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHHH
Q 042863 94 LQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVAS 149 (680)
Q Consensus 94 ~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~~ 149 (680)
.+ -.+.+.+...+-++++|+... -|......+...+... ..+..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 234445556667889998754 4444445555554432 23556888887765443
No 362
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.45 E-value=0.014 Score=62.44 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=80.2
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|+...++.+.+.+.... .....|.|.|+.|+||+++|+.+... -...-...+.+++.... ...+. ..+
T Consensus 142 ig~s~~~~~l~~~i~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~--s~~~~~~~v~v~c~~~~--~~~~~---~~l 210 (445)
T TIGR02915 142 ITSSPGMQKICRTIEKIA----PSDITVLLLGESGTGKEVLARALHQL--SDRKDKRFVAINCAAIP--ENLLE---SEL 210 (445)
T ss_pred eecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHh--CCcCCCCeEEEECCCCC--hHHHH---HHh
Confidence 566666677766665422 22345779999999999999999763 11111234466666532 22222 222
Q ss_pred cCCCCCCcC--HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHHH
Q 042863 82 TGQNQGDLD--IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKVA 148 (680)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~~ 148 (680)
++....... .......+ .....-.|++|++..........+..++.... ..+++|.||......
T Consensus 211 fg~~~~~~~~~~~~~~g~~---~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~ 287 (445)
T TIGR02915 211 FGYEKGAFTGAVKQTLGKI---EYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKR 287 (445)
T ss_pred cCCCCCCcCCCccCCCCce---eECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHH
Confidence 221111000 00000000 01223468899998877777677776665321 246888888654211
Q ss_pred Hh--------hccCCCCCceeCCCCChh
Q 042863 149 SV--------MGTRGGTTGYNLQGLPLE 168 (680)
Q Consensus 149 ~~--------~~~~~~~~~~~l~~l~~~ 168 (680)
.. ....-....+.+|||.+.
T Consensus 288 ~~~~~~~~~~L~~~l~~~~i~lPpLr~R 315 (445)
T TIGR02915 288 MIAEGTFREDLFYRIAEISITIPPLRSR 315 (445)
T ss_pred HHHcCCccHHHHHHhccceecCCCchhc
Confidence 10 001112245788888764
No 363
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0016 Score=60.90 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=30.0
Q ss_pred CCCCCcEEecCCc--cccccCcccccccCcccEEEecccccccc--ccccCcccccceeeccccc
Q 042863 452 ELQSLQTLNLEEC--LELEELPKDIRYLVSLRVFEVTTKQKSLQ--DSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 452 ~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~ 512 (680)
.+|+|++|.++.| .....++.-...+++|++++++.|.+..+ ...+..+.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 3445555555554 33333443344445555555555544432 2334445556666666654
No 364
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.00096 Score=62.30 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=50.2
Q ss_pred cCcceeEEEeCCCCcccccccccCcCCcceeccccc--cCCCccChhhcCCCCCcEEecCCccccc-cCcccccccCccc
Q 042863 405 KSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRN--YKIKKLPNAICELQSLQTLNLEECLELE-ELPKDIRYLVSLR 481 (680)
Q Consensus 405 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 481 (680)
.+..|+.|++.++.++.+ ..+-.+++|+.|.++.| .....++.....+|+|++|++++|.+-. ..-..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 445556666666555533 23445677788888777 4444555545566788888887774331 1112234555666
Q ss_pred EEEeccccccc
Q 042863 482 VFEVTTKQKSL 492 (680)
Q Consensus 482 ~L~l~~~~~~~ 492 (680)
.|++.+|..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 77776665443
No 365
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.42 E-value=0.016 Score=59.92 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHHh----cCCC--CCC------CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALM----QTSS--GES------ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~----~~~~--~~~------~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|.++..+.+...+. +... ... .....+.++|++|+|||++|+.++.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3788888888876662 1100 000 1135799999999999999999986
No 366
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0089 Score=51.57 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=31.8
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ 84 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (680)
.|.|.|++|+||||+|++++... .-. +++.. .++++++++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~--gl~-----~vsaG------~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL--GLK-----LVSAG------TIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh--CCc-----eeecc------HHHHHHHHHcCCC
Confidence 58899999999999999999832 211 22222 5788888887644
No 367
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.42 E-value=0.022 Score=55.10 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=26.3
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC 63 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 63 (680)
-+.|.|.+|.|||+|+.++++ ....+|+.++++.
T Consensus 71 r~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~ 104 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFA 104 (274)
T ss_pred EEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEE
Confidence 578999999999999999998 5555565444443
No 368
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.021 Score=56.28 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=77.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI---MTKIIKSITGQNQGDLDIEQLQRILRV 100 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (680)
..++-|.++||+|.|||-+|++++. +....| ++++...-..+- -..+++.++.-
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Ak--eaga~f-----Inv~~s~lt~KWfgE~eKlv~AvFsl---------------- 181 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAK--EAGANF-----INVSVSNLTSKWFGEAQKLVKAVFSL---------------- 181 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHH--HcCCCc-----ceeeccccchhhHHHHHHHHHHHHhh----------------
Confidence 3467899999999999999999998 545554 332221111111 11111111110
Q ss_pred HhCCceEEEEEecCCC-------CChhH----HHHHHHhcCCC--CCCCEEEE---ecCchHH-HHhhccCCCCCceeCC
Q 042863 101 CLNGKRYLLVMDDVWN-------EDPKV----WDKLKSLLSGG--AKGSKILV---TTRSNKV-ASVMGTRGGTTGYNLQ 163 (680)
Q Consensus 101 ~l~~~~~llvlD~~~~-------~~~~~----~~~l~~~l~~~--~~~~~iii---TsR~~~~-~~~~~~~~~~~~~~l~ 163 (680)
.-+=.+.+|.+|.+.. .+.+. -.+++..+... +.+.+|+| |-|...+ ...++..+....+.+|
T Consensus 182 AsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP 261 (386)
T KOG0737|consen 182 ASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLP 261 (386)
T ss_pred hhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCC
Confidence 1123567888887732 11111 13355555542 33445665 5554433 2333333333444554
Q ss_pred CCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 164 GLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
. ..+-.++++-.........+-+ ..++++.+.|.-
T Consensus 262 ~--~~qR~kILkviLk~e~~e~~vD----~~~iA~~t~GyS 296 (386)
T KOG0737|consen 262 D--AEQRRKILKVILKKEKLEDDVD----LDEIAQMTEGYS 296 (386)
T ss_pred c--hhhHHHHHHHHhcccccCcccC----HHHHHHhcCCCc
Confidence 4 5566677766665554433322 357777777653
No 369
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.043 Score=58.33 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=88.2
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Q 042863 22 ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC 101 (680)
Q Consensus 22 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (680)
+...++-+.+||++|.|||-+++++++. ...+ .+.+++ .+++ +.+. ..+...+.+.+.+.
T Consensus 214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e--~~a~---~~~i~~------peli----~k~~-----gEte~~LR~~f~~a 273 (693)
T KOG0730|consen 214 GIKPPRGLLLYGPPGTGKTFLVRAVANE--YGAF---LFLING------PELI----SKFP-----GETESNLRKAFAEA 273 (693)
T ss_pred CCCCCCCccccCCCCCChHHHHHHHHHH--hCce---eEeccc------HHHH----Hhcc-----cchHHHHHHHHHHH
Confidence 3456788999999999999999999983 2211 112221 1222 2221 11233455556666
Q ss_pred hCCc-eEEEEEecCCCC----------ChhHHHHHHHhcCCCCC--CCEEEEecCchHHHHhhccCCC-CCceeCCCCCh
Q 042863 102 LNGK-RYLLVMDDVWNE----------DPKVWDKLKSLLSGGAK--GSKILVTTRSNKVASVMGTRGG-TTGYNLQGLPL 167 (680)
Q Consensus 102 l~~~-~~llvlD~~~~~----------~~~~~~~l~~~l~~~~~--~~~iiiTsR~~~~~~~~~~~~~-~~~~~l~~l~~ 167 (680)
.+.+ +.++.+|++... +.....++..++...++ ...+|-+|+++.-......+++ .+.+.+.-.+.
T Consensus 274 ~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~ 353 (693)
T KOG0730|consen 274 LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGS 353 (693)
T ss_pred hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCc
Confidence 6666 888888887441 22233445555555442 3334456665532222221111 24467777777
Q ss_pred hhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 168 EDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
.+..++++.....-....+ .....++..+.|.-
T Consensus 354 ~~RldIl~~l~k~~~~~~~----~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 354 DGRLDILRVLTKKMNLLSD----VDLEDIAVSTHGYV 386 (693)
T ss_pred hhHHHHHHHHHHhcCCcch----hhHHHHHHHccchh
Confidence 7788888777654443322 33356666666654
No 370
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.035 Score=51.69 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCcCHHHHHH-HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCC--CCCCCEEEEecCchHHHHhhc
Q 042863 87 GDLDIEQLQR-ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSG--GAKGSKILVTTRSNKVASVMG 152 (680)
Q Consensus 87 ~~~~~~~~~~-~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~--~~~~~~iiiTsR~~~~~~~~~ 152 (680)
.+.+-.+.++ .+.+.+.-++-++|+|+... -|...-+++..++.. ...+..+|+.|-+-.+...+.
T Consensus 140 ~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 140 HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 3344455444 45566777788999999754 233444455555443 234556788887776555443
No 371
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.39 E-value=0.052 Score=56.39 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 6 KDREKIIEALMQTSS-GESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~-~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+.++..||..... ....+.+++.|.||+|+||||.++.++.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 456778888871110 1235568999999999999999998876
No 372
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.38 E-value=0.019 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.+.+.+++|.|++|+|||||++.++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999873
No 373
>PRK04328 hypothetical protein; Provisional
Probab=96.37 E-value=0.017 Score=56.11 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=31.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
.-.++.|.|++|.|||+|+.+++. ...+.-..++|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeC
Confidence 346899999999999999999987 3333445688888765
No 374
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.14 Score=50.09 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC---
Q 042863 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ--- 84 (680)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 84 (680)
-+.+.+.+.. +.-+....++|+.|+||+++|..+++.. .... ... ....+...-+++
T Consensus 6 ~~~L~~~i~~-----~rl~HAyLf~G~~G~Gk~~lA~~~A~~l-lC~~-----------~~~---~c~~~~~~~HPD~~~ 65 (290)
T PRK05917 6 WEALIQRVRD-----QKVPSAIILHGQDLSNLSARAYELASLI-LKET-----------SPE---AAYKISQKIHPDIHE 65 (290)
T ss_pred HHHHHHHHHc-----CCcCeeEeeECCCCCcHHHHHHHHHHHH-hCCC-----------Ccc---HHHHHhcCCCCCEEE
Confidence 3455666644 2345677799999999999999998731 1111 000 011111111111
Q ss_pred ----CC-CCcCHHHHHHHHHHHh-----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhcc
Q 042863 85 ----NQ-GDLDIEQLQRILRVCL-----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGT 153 (680)
Q Consensus 85 ----~~-~~~~~~~~~~~~~~~l-----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~ 153 (680)
.. ....++++.. +.+.+ .+..=++|+|+++.........+...+-.-+.++.+|++|.++. +.....
T Consensus 66 i~p~~~~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~- 143 (290)
T PRK05917 66 FSPQGKGRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR- 143 (290)
T ss_pred EecCCCCCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH-
Confidence 00 0123444433 22222 24445889999988888888888888888777777776666643 332322
Q ss_pred CCCCCceeCCCC
Q 042863 154 RGGTTGYNLQGL 165 (680)
Q Consensus 154 ~~~~~~~~l~~l 165 (680)
.++..+.++++
T Consensus 144 -SRcq~~~~~~~ 154 (290)
T PRK05917 144 -SRSLSIHIPME 154 (290)
T ss_pred -hcceEEEccch
Confidence 23466777765
No 375
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.34 E-value=0.045 Score=53.28 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC-
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN- 103 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~- 103 (680)
...++++|++|+||||+++.++. .....-..+.+++..... ....-+......++.+.....+.+.+...+.+.-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~--~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 36899999999999999999987 333332346666655432 11122233333333232223455555555544322
Q ss_pred CceEEEEEecCCCC--ChhHHHHHHHhcC
Q 042863 104 GKRYLLVMDDVWNE--DPKVWDKLKSLLS 130 (680)
Q Consensus 104 ~~~~llvlD~~~~~--~~~~~~~l~~~l~ 130 (680)
.+.-++|+|..... +...+..+..++.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 24568899988553 3444555555444
No 376
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.054 Score=48.26 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=30.9
Q ss_pred HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcC-CCCCCCEEEEecCch
Q 042863 97 ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLS-GGAKGSKILVTTRSN 145 (680)
Q Consensus 97 ~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~-~~~~~~~iiiTsR~~ 145 (680)
.+.+++-.++-|-|+|+... .|....+.+...+. +...|-.||.||-.+
T Consensus 140 AlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 140 ALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 44555567788999999855 34444455555554 334455688888644
No 377
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.34 E-value=0.019 Score=56.45 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=44.5
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC--CcEEEEEeCCcCCHHHHHHHHHHHhc-CCCCCCcCHHHHHHHHH
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF--ELKIWICISEDFGERQIMTKIIKSIT-GQNQGDLDIEQLQRILR 99 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 99 (680)
...+.+|+|.|+.|+||||+|+.+.. ...... ..+..++.............. ..+. ...+...+.+.+...+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHH
Confidence 35678999999999999999988765 332211 124445444433222222211 1011 11234456677777777
Q ss_pred HHhCCc
Q 042863 100 VCLNGK 105 (680)
Q Consensus 100 ~~l~~~ 105 (680)
....++
T Consensus 136 ~Lk~g~ 141 (290)
T TIGR00554 136 DLKSGK 141 (290)
T ss_pred HHHCCC
Confidence 765544
No 378
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.017 Score=53.39 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+|+|.|.+|+||||+|+++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3457999999999999999999998
No 379
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.32 E-value=0.018 Score=54.57 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=40.7
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhh--cCCcEEEEEeCCcCCHHHHHHHHHHHhc-CCCCCCcCHHHHHHHHHHHhC
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEE--HFELKIWICISEDFGERQIMTKIIKSIT-GQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~ 103 (680)
+|+|.|++|+||||+|+.++. .... .-..+..++.............. ..+. ...+...+.+.+...+..+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~-~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIER-GLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHh-hhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 478999999999999999987 3332 11235555555433222222221 1111 112344566666666666654
No 380
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.30 E-value=0.034 Score=58.86 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=73.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC----------CCcCHHHH-
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ----------GDLDIEQL- 94 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~- 94 (680)
..+|.|+|+.|.||||=..++.+...+.+ .+.+-++-........+.+.+.++++..-- .-.+....
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~I 448 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKI 448 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeE
Confidence 46999999999999998888776322222 233333222222234667778888854311 00111000
Q ss_pred -----HHHHHHHhCC----ceEEEEEecCCCCChhHHHHHHHhc---CCCCCCCEEEEecCchHHHHhhccCCCCCceeC
Q 042863 95 -----QRILRVCLNG----KRYLLVMDDVWNEDPKVWDKLKSLL---SGGAKGSKILVTTRSNKVASVMGTRGGTTGYNL 162 (680)
Q Consensus 95 -----~~~~~~~l~~----~~~llvlD~~~~~~~~~~~~l~~~l---~~~~~~~~iiiTsR~~~~~~~~~~~~~~~~~~l 162 (680)
.-.+++.+++ +=-+||+|++|... .+.+-+..++ .......++||||-.-....+....+.+..+.+
T Consensus 449 kymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~I 527 (1042)
T KOG0924|consen 449 KYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTI 527 (1042)
T ss_pred EEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeee
Confidence 0123334433 33589999997632 2223333332 233457899999987665555555444455555
Q ss_pred CC
Q 042863 163 QG 164 (680)
Q Consensus 163 ~~ 164 (680)
++
T Consensus 528 pG 529 (1042)
T KOG0924|consen 528 PG 529 (1042)
T ss_pred cC
Confidence 54
No 381
>PF13479 AAA_24: AAA domain
Probab=96.30 E-value=0.015 Score=54.91 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=42.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC-c
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG-K 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~-~ 105 (680)
-.+.|||++|+||||+|..+ +.+++++............ ........+.+++.+.+.....+ .
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g~~~~~~~~------~~~~i~i~s~~~~~~~~~~l~~~~~ 67 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENGSDSLKFLD------DGDVIPITSWEDFLEALDELEEDEA 67 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCCccchhhhc------CCCeeCcCCHHHHHHHHHHHHhccC
Confidence 46899999999999999666 4577887766532211111 11122223566666655443222 2
Q ss_pred eE-EEEEecC
Q 042863 106 RY-LLVMDDV 114 (680)
Q Consensus 106 ~~-llvlD~~ 114 (680)
.+ .||+|.+
T Consensus 68 ~y~tiVIDsi 77 (213)
T PF13479_consen 68 DYDTIVIDSI 77 (213)
T ss_pred CCCEEEEECH
Confidence 22 6777877
No 382
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.28 E-value=0.013 Score=57.98 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 100 (680)
-+++-|+|+.|+||||||.+++. ...+.-...+|++..+..++.. +..++.+. ..+...++....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 46899999999999999999987 4444455688999887665543 33343321 123345666666666
Q ss_pred HhCCc-eEEEEEecC
Q 042863 101 CLNGK-RYLLVMDDV 114 (680)
Q Consensus 101 ~l~~~-~~llvlD~~ 114 (680)
.++.. .-+||+|-|
T Consensus 126 lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHTTSESEEEEE-C
T ss_pred HhhcccccEEEEecC
Confidence 66443 458899988
No 383
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0066 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.|.|.|++|+||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999984
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=96.27 E-value=0.021 Score=54.26 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED 67 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 67 (680)
-..+.|.|.+|+|||+++.+++. ........++|++....
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~--~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAV--EAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEEeCC
Confidence 35889999999999999999987 33334455778876653
No 385
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.27 E-value=0.018 Score=53.65 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=44.1
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhh-cCC---cEEEEEeCCcCCHHHHHHHHHHHhc----CCCCCCcCHHHHHHHHH
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEE-HFE---LKIWICISEDFGERQIMTKIIKSIT----GQNQGDLDIEQLQRILR 99 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~ 99 (680)
+|+|.|++|+||||+|++++. .... ... .+..+.............. -.... -..+...+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 589999999999999999988 4432 222 2444444332222222222 11111 11234467777888888
Q ss_pred HHhCCceE
Q 042863 100 VCLNGKRY 107 (680)
Q Consensus 100 ~~l~~~~~ 107 (680)
.+.+++.+
T Consensus 78 ~L~~g~~i 85 (194)
T PF00485_consen 78 ALKNGGSI 85 (194)
T ss_dssp HHHTTSCE
T ss_pred HHhCCCcc
Confidence 77666543
No 386
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.022 Score=52.15 Aligned_cols=120 Identities=21% Similarity=0.199 Sum_probs=61.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhc--CCCC---CC----------cCH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSIT--GQNQ---GD----------LDI 91 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~---~~----------~~~ 91 (680)
.+++|.|+.|.|||||++.++... ....+.++++...............+.+. .+.. .. .+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 489999999999999999998632 22334444432111110000011111111 1110 01 222
Q ss_pred HHHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC-CC-CCEEEEecCchHHHH
Q 042863 92 EQLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG-AK-GSKILVTTRSNKVAS 149 (680)
Q Consensus 92 ~~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~-~~~iiiTsR~~~~~~ 149 (680)
.+.+ -.+.+.+...+-++++|+-.. .|......+...+... .. +..+|++|-+.....
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2222 234455566778899998744 4555555565555432 11 456777777765443
No 387
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.26 E-value=0.041 Score=57.30 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhh-hcCCcEEEEEeCCcCCH-HHHHHHHHHHhcCCCC---CCcCHHHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVE-EHFELKIWICISEDFGE-RQIMTKIIKSITGQNQ---GDLDIEQLQRIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 98 (680)
..+.++.++|++|+||||+|..++. ... ..-..+..+++...... .+.+.......+.+.. ...++..+....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 4478999999999999999999987 332 22234556665542221 2223344444443211 123344443333
Q ss_pred HHHhCCc-eEEEEEecCC
Q 042863 99 RVCLNGK-RYLLVMDDVW 115 (680)
Q Consensus 99 ~~~l~~~-~~llvlD~~~ 115 (680)
.+.+... .-+||+|-..
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 3333233 3378888764
No 388
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.25 E-value=0.03 Score=53.56 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=30.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
-.++.|.|++|+|||++|.+++. .....-..++|++...
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~--~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLY--QGLKNGEKAMYISLEE 54 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC
Confidence 46899999999999999999987 3333345678887765
No 389
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.25 E-value=0.037 Score=50.28 Aligned_cols=107 Identities=19% Similarity=0.045 Sum_probs=57.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHH-HHHHHHhCCc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQ-RILRVCLNGK 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~ 105 (680)
.+++|.|+.|+|||||++.++.-.. ...+.++++...-. ...+. ...+..+.+ -.+.+.+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~------------~~~q~-~~LSgGq~qrv~laral~~~ 89 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPV------------YKPQY-IDLSGGELQRVAIAAALLRN 89 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEE------------EEccc-CCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999886322 12233333210000 00000 013433332 3344455567
Q ss_pred eEEEEEecCCC-CChhHHHHHHHhcCCC--CCCCEEEEecCchHHHH
Q 042863 106 RYLLVMDDVWN-EDPKVWDKLKSLLSGG--AKGSKILVTTRSNKVAS 149 (680)
Q Consensus 106 ~~llvlD~~~~-~~~~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~ 149 (680)
+-++++|+-.. .+......+...+... ..+..||++|-+.....
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 78899998754 3444445555544432 22245777777665443
No 390
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0088 Score=52.45 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC 63 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 63 (680)
....+|++.|.+|+||||+|.++.. ......-.+..++
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~--~L~~~G~~~y~LD 58 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE--KLFAKGYHVYLLD 58 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH--HHHHcCCeEEEec
Confidence 4567999999999999999999987 5544443344443
No 391
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.033 Score=62.50 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN 85 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (680)
+.+.+|.+.+.. ..++.|.|+.|.||||-.-+++.+... ...+.+-+.=........+...++.+++..-
T Consensus 53 ~~~~~i~~ai~~--------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIEQ--------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHh--------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 456677777754 358999999999999999998874322 2223333322222233466778888887541
Q ss_pred C----------CC---------cCHHHHHHHHHH-HhCCceEEEEEecCCCCChhHHHHHHHh----cCCCCCCCEEEEe
Q 042863 86 Q----------GD---------LDIEQLQRILRV-CLNGKRYLLVMDDVWNEDPKVWDKLKSL----LSGGAKGSKILVT 141 (680)
Q Consensus 86 ~----------~~---------~~~~~~~~~~~~-~l~~~~~llvlD~~~~~~~~~~~~l~~~----l~~~~~~~~iiiT 141 (680)
- .. .+...+.+.+.. ..-.+=-.||+|++|.... ..+.+..+ +.......||||+
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCCceEEEE
Confidence 1 11 123333333332 1112224899999976322 22333333 3333445899999
Q ss_pred cCchHHHHhhccCCCCCceeCC
Q 042863 142 TRSNKVASVMGTRGGTTGYNLQ 163 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~~~~~l~ 163 (680)
|=.-....+....+....+.++
T Consensus 202 SATld~~rfs~~f~~apvi~i~ 223 (845)
T COG1643 202 SATLDAERFSAYFGNAPVIEIE 223 (845)
T ss_pred ecccCHHHHHHHcCCCCEEEec
Confidence 8776555554444333333333
No 392
>PRK07667 uridine kinase; Provisional
Probab=96.22 E-value=0.012 Score=54.60 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.+.+.+.. ..+...+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~~~~~~~~~----~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKK----HKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHh----cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555644 234558999999999999999999987
No 393
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.20 E-value=0.035 Score=56.08 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=39.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhh----cCCcEEEEEeCCcCCHHHHHHHHHHHhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEE----HFELKIWICISEDFGERQIMTKIIKSIT 82 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (680)
-.++-|+|++|+|||+++..++....... .-..++|++....+.++.+ .++++.++
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 46888999999999999998875322211 1125899999888777654 44555553
No 394
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.19 E-value=0.045 Score=56.89 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=82.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.+.+.+ .....|.|+|+.|+||-.+|+.+.+... +.. -.|+.++-..-+.++++. +
T Consensus 143 liG~S~am~~l~~~i~kvA----~s~a~VLI~GESGtGKElvAr~IH~~S~-R~~---~PFVavNcaAip~~l~ES---E 211 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVA----PSDASVLITGESGTGKELVARAIHQASP-RAK---GPFIAVNCAAIPENLLES---E 211 (464)
T ss_pred ceecCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHhhCc-ccC---CCceeeecccCCHHHHHH---H
Confidence 5899999999999998754 3345799999999999999999986321 111 124433333333443333 2
Q ss_pred hcCCCCCC--cCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCchHH
Q 042863 81 ITGQNQGD--LDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~--~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~~ 147 (680)
+++.+... .........+. ....=-|+||++.+........+...+... +...|||-+|.....
T Consensus 212 LFGhekGAFTGA~~~r~G~fE---~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~ 288 (464)
T COG2204 212 LFGHEKGAFTGAITRRIGRFE---QANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE 288 (464)
T ss_pred hhcccccCcCCcccccCccee---EcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH
Confidence 22211110 00000000000 112236778999777665555565555432 124567766653321
Q ss_pred --------HHhhccCCCCCceeCCCCCh
Q 042863 148 --------ASVMGTRGGTTGYNLQGLPL 167 (680)
Q Consensus 148 --------~~~~~~~~~~~~~~l~~l~~ 167 (680)
.+.+.++-.+-.+.++||.+
T Consensus 289 ~~v~~G~FReDLyyRLnV~~i~iPpLRE 316 (464)
T COG2204 289 EEVAAGRFREDLYYRLNVVPLRLPPLRE 316 (464)
T ss_pred HHHHcCCcHHHHHhhhccceecCCcccc
Confidence 11112222345688888876
No 395
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.18 E-value=0.04 Score=58.25 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
-.++.|.|++|+|||||+.+++. .....-..++|++..+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLYVSGEE 132 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEECcC
Confidence 46889999999999999999987 3333334588887654
No 396
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.057 Score=58.33 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=87.1
Q ss_pred CchhHHHHHHHHHhcCCCCC---CCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSSGE---SETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
+++..+..+...+....... -.-..++.++|++|+||||+++.++. ...-+ ++-+++.. ++.
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas--~lg~h---~~evdc~e----------l~~ 469 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVAS--ELGLH---LLEVDCYE----------LVA 469 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHH--HhCCc---eEeccHHH----------Hhh
Confidence 34455555666665433111 12467899999999999999999988 44443 22333221 000
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecC--------CCCChhHHHHHHHhcC-----CCCCCCEEEEecCc-h
Q 042863 80 SITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDV--------WNEDPKVWDKLKSLLS-----GGAKGSKILVTTRS-N 145 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~--------~~~~~~~~~~l~~~l~-----~~~~~~~iiiTsR~-~ 145 (680)
+ . ...+...+.....+.-.-.+.+|++=|+ ...+......+...+. ...++..++.|+.+ +
T Consensus 470 ~----s-~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~ 544 (953)
T KOG0736|consen 470 E----S-ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE 544 (953)
T ss_pred c----c-cchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc
Confidence 0 0 0011111122222222234555555444 1112112222222222 22334444444432 2
Q ss_pred HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 146 KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
.+...... .-...+.++.+++++..++|+.+......... .-...+++++.|.-+
T Consensus 545 ~lp~~i~~-~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~----v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 545 DLPADIQS-LFLHEIEVPALSEEQRLEILQWYLNHLPLNQD----VNLKQLARKTSGFSF 599 (953)
T ss_pred cCCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHhccccchH----HHHHHHHHhcCCCCH
Confidence 22222211 11256889999999999999998855433221 223467777777554
No 397
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.17 E-value=0.016 Score=56.54 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC 63 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 63 (680)
+.|.|+|.||+||||+|+++.. .....-..+.+++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~--~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK--YLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH--HHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHH--HHHhcCCEEEEEc
Confidence 3689999999999999999988 4433322344443
No 398
>PTZ00035 Rad51 protein; Provisional
Probab=96.16 E-value=0.047 Score=55.30 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=37.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhh----hcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVE----EHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
.-.++.|+|++|+|||+|+..++...+.. ..-..++|++....+.++. +.+++..+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~ 176 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERF 176 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHh
Confidence 34788899999999999999987533311 1123577999877666554 34444444
No 399
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.15 E-value=0.016 Score=52.94 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=26.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEe
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICI 64 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~ 64 (680)
..++++.|.+|+||||+|+.++. ........+.+++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~--~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE--KLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEcC
Confidence 35899999999999999999998 33332223455543
No 400
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.15 E-value=0.016 Score=55.51 Aligned_cols=85 Identities=25% Similarity=0.278 Sum_probs=50.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCHHHHHHHHHHHhcCC---------------CCC-
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGERQIMTKIIKSITGQ---------------NQG- 87 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~- 87 (680)
...++.|.|++|+|||+++.+++. ..... -..++|++..... ..+.+.+ +.++-+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~--~~~~~~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLY--NGLKNFGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHHHT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHH--HhhhhcCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEeccccc
Confidence 346899999999999999999987 33333 4568899875432 3333322 233211 000
Q ss_pred ----CcCHHHHHHHHHHHhCC-ceEEEEEecC
Q 042863 88 ----DLDIEQLQRILRVCLNG-KRYLLVMDDV 114 (680)
Q Consensus 88 ----~~~~~~~~~~~~~~l~~-~~~llvlD~~ 114 (680)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34566666666665543 2367788876
No 401
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.022 Score=53.17 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 5 DKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 5 ~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++++.+.+.++-+. .-+=..++-|.+|||+|.|||-+|+++++
T Consensus 183 keqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 183 KEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred HHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 455666666554321 01124567799999999999999999998
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.13 E-value=0.054 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++++|.|+.|.|||||.+.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999975
No 403
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.13 E-value=0.037 Score=53.65 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=35.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
.++.|.|++|+|||+++.+++. ..... -..++|++... +...+..+++..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~--~~~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAE--NIAKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 5899999999999999999987 33332 45678887765 445555555433
No 404
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.12 E-value=0.013 Score=60.80 Aligned_cols=48 Identities=29% Similarity=0.409 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHHhc----CCCC------CCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALMQ----TSSG------ESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~----~~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|.+...+.+...+.. .... .......+.++|++|+|||++|+.++.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47888888887655521 1000 011246799999999999999999986
No 405
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.10 E-value=0.034 Score=58.78 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=30.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
-.++.|.|++|+|||||+.+++. .....-..++|++...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVSGEE 118 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccc
Confidence 45899999999999999999987 3333334578888654
No 406
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.10 E-value=0.0055 Score=58.18 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999987
No 407
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.08 E-value=0.016 Score=51.24 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++++.|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 408
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.08 E-value=0.015 Score=59.34 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=36.2
Q ss_pred CCCchhHHHHHHHHHhcC------CC--CCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALMQT------SS--GESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~------~~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|++++.+.+..++... .. .....+..+.++|++|+|||++|+.++.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 478899999988887531 00 0112257899999999999999999987
No 409
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.07 E-value=0.05 Score=55.00 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhc----CCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEH----FELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
.-.++-|+|++|+|||+++.+++........ -..++|++....+.+..+. ++++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 3578889999999999999999864222111 1368999988877665543 344444
No 410
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.07 E-value=0.023 Score=61.21 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|......++.+.+.... .....+.+.|.+|.||+++|+.+... ........+-+++... ....+...+
T Consensus 137 ig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~--~~~~~~~~~~~~c~~~--~~~~~~~~l--- 205 (463)
T TIGR01818 137 IGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRH--SPRANGPFIALNMAAI--PKDLIESEL--- 205 (463)
T ss_pred eecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHh--CCCCCCCeEEEeCCCC--CHHHHHHHh---
Confidence 344555555655554422 23346889999999999999888762 2222223444555543 222222222
Q ss_pred cCCCCCCc--CHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHHH
Q 042863 82 TGQNQGDL--DIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKVA 148 (680)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~~ 148 (680)
++...... ..... .........-.|++|+++.........+..++.... .+++||.||......
T Consensus 206 fg~~~~~~~~~~~~~---~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~ 282 (463)
T TIGR01818 206 FGHEKGAFTGANTRR---QGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEA 282 (463)
T ss_pred cCCCCCCCCCcccCC---CCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHH
Confidence 21111000 00000 000111223458899998877777667776665321 245788877644211
Q ss_pred --------HhhccCCCCCceeCCCCC--hhhHHHHHHH
Q 042863 149 --------SVMGTRGGTTGYNLQGLP--LEDCLSLFMK 176 (680)
Q Consensus 149 --------~~~~~~~~~~~~~l~~l~--~~~~~~l~~~ 176 (680)
......-....+.|+||. .+|...|...
T Consensus 283 ~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~ 320 (463)
T TIGR01818 283 LVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARH 320 (463)
T ss_pred HHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHH
Confidence 011111122468899988 3455554443
No 411
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.05 E-value=0.029 Score=54.67 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC-------CCcCHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ-------GDLDIEQLQR 96 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~ 96 (680)
.+..++.|.|.+|+|||||+..+.. ...... .+..+..... +.. - .+.++..+.+.. -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~-~~~VI~gD~~-t~~-D-a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSV-PCAVIEGDQQ-TVN-D-AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCC-CEEEECCCcC-cHH-H-HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4578999999999999999999987 433333 2333332221 222 1 223444432211 1123455556
Q ss_pred HHHHHhCCceEEEEEecCCC
Q 042863 97 ILRVCLNGKRYLLVMDDVWN 116 (680)
Q Consensus 97 ~~~~~l~~~~~llvlD~~~~ 116 (680)
.+..+.....-++|++++..
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 66665444456889999954
No 412
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.022 Score=53.26 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=28.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC 63 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 63 (680)
..+.++++.|.+|+||||+|+.+.. ........+++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~--~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE--ALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhCCCCEEEEc
Confidence 4567999999999999999999987 4333323355554
No 413
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.04 E-value=0.0043 Score=53.36 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHhhcc
Q 042863 29 IPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~ 49 (680)
|+|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 414
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.021 Score=54.78 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH 55 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~ 55 (680)
..+..+.|||++|-|||-+|+.++. .+.-.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa--~mg~n 193 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA--TMGVN 193 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH--hcCCc
Confidence 4578999999999999999999988 54444
No 415
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.02 E-value=0.1 Score=54.08 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
+.+.+|.++|+.|+||||++..++. .....-..+..+++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~--~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY--YYQRKGFKPCLVCADT 138 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEcCcc
Confidence 4578999999999999999999987 3333333466666544
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.01 E-value=0.026 Score=56.61 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCH-HHHHHHHHHHhcCCC---CCCcCH-HHHHHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGE-RQIMTKIIKSITGQN---QGDLDI-EQLQRIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~---~~~~~~-~~~~~~~ 98 (680)
....++.++|++|+||||++..++.. ....-..+..++....... .+-+.......+.+. ....+. ..+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK--YKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 35689999999999999999999983 3333234555554432111 011112222222111 111222 2333444
Q ss_pred HHHhCCceEEEEEecCCC
Q 042863 99 RVCLNGKRYLLVMDDVWN 116 (680)
Q Consensus 99 ~~~l~~~~~llvlD~~~~ 116 (680)
.......--+||+|-...
T Consensus 190 ~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 190 QAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHhCCCCEEEEeCCCC
Confidence 444444456888997744
No 417
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.01 E-value=0.091 Score=48.30 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=60.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC--CHHHHHHHHHHHhc--CCC------CCC--------
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF--GERQIMTKIIKSIT--GQN------QGD-------- 88 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~--~~~------~~~-------- 88 (680)
..++|.|+.|.|||||++.++.... ...+.++++..... ......+ +.++ .+. ...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~---~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDAIR---AGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHHHHh---CCeEEecCCcccCcccCCCcHHHHHH
Confidence 4789999999999999999986322 22334444321111 1011111 0111 111 001
Q ss_pred ----cCHHHHHH-HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHH
Q 042863 89 ----LDIEQLQR-ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVA 148 (680)
Q Consensus 89 ----~~~~~~~~-~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~ 148 (680)
.+..+.++ .+.+.+-.++-++++|+-.. .|......+...+... ..+..+|++|.+....
T Consensus 101 ~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred HHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 22222222 34445556778999998744 3444545555544432 2255688888776433
No 418
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.99 E-value=0.0034 Score=52.44 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCC
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFE 57 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~ 57 (680)
+|.+.|.+|+|||++|+.++. .....|.
T Consensus 1 HvLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp -EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred CEeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 478999999999999999998 4555543
No 419
>PRK15115 response regulator GlrR; Provisional
Probab=95.96 E-value=0.067 Score=57.24 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=76.7
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|+...+.++.+...... .....|.+.|++|+|||++|+.+.+. ....-...+.+++.... ...+.. .+
T Consensus 137 ig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~--s~r~~~~f~~i~c~~~~--~~~~~~---~l 205 (444)
T PRK15115 137 VTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNA--SPRASKPFIAINCGALP--EQLLES---EL 205 (444)
T ss_pred cccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHh--cCCCCCCeEEEeCCCCC--HHHHHH---Hh
Confidence 445555555555444322 23346889999999999999988763 11122234455555431 122222 12
Q ss_pred cCCCCCCc--CHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCchHHH
Q 042863 82 TGQNQGDL--DIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSNKVA 148 (680)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~~~~ 148 (680)
+....... ........ ......-.|++|+++.........+..++.... ..+++|.||.... .
T Consensus 206 fg~~~~~~~~~~~~~~g~---~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l-~ 281 (444)
T PRK15115 206 FGHARGAFTGAVSNREGL---FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDL-P 281 (444)
T ss_pred cCCCcCCCCCCccCCCCc---EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCH-H
Confidence 11110000 00000000 001223478999998877777777777665321 2457888776542 2
Q ss_pred Hhhcc---------CCCCCceeCCCCChh
Q 042863 149 SVMGT---------RGGTTGYNLQGLPLE 168 (680)
Q Consensus 149 ~~~~~---------~~~~~~~~l~~l~~~ 168 (680)
..... .-....+.++||.+.
T Consensus 282 ~~~~~~~f~~~l~~~l~~~~i~lPpLr~R 310 (444)
T PRK15115 282 KAMARGEFREDLYYRLNVVSLKIPALAER 310 (444)
T ss_pred HHHHcCCccHHHHHhhceeeecCCChHhc
Confidence 11111 011245788888763
No 420
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.033 Score=49.84 Aligned_cols=117 Identities=22% Similarity=0.227 Sum_probs=63.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHH-HHHHHHhCCc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQ-RILRVCLNGK 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~ 105 (680)
.+++|.|+.|.|||||++.++... ....+.++++........ ..+....+.-..+ .+..+.+ -.+.+.+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q--lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVPQ--LSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEee--CCHHHHHHHHHHHHHhcC
Confidence 589999999999999999998732 223455555432211110 1111111211111 3333322 3355555566
Q ss_pred eEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHHHh
Q 042863 106 RYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVASV 150 (680)
Q Consensus 106 ~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~~~ 150 (680)
+-++++|+... .|......+...+... ..+..++++|-+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 78999999854 3444555555554432 124568888877655444
No 421
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.044 Score=54.37 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..=+-|.++||+|.|||-||++++-
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHH
Confidence 3346799999999999999999987
No 422
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.93 E-value=0.044 Score=50.98 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=28.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcC--------CcEEEEEeCCc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHF--------ELKIWICISED 67 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--------~~~~~~~~~~~ 67 (680)
.++.|.|++|+|||+++.+++.+.-....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 378899999999999999998853322222 35888887654
No 423
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.93 E-value=0.039 Score=61.32 Aligned_cols=83 Identities=19% Similarity=0.147 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 100 (680)
-+++-|+|++|+|||+|+.+++.. ....-..++|++..+..... .++.++.+. ......++....+.+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 478889999999999999998763 33334568899887766632 455555332 223344555556666
Q ss_pred HhCC-ceEEEEEecCC
Q 042863 101 CLNG-KRYLLVMDDVW 115 (680)
Q Consensus 101 ~l~~-~~~llvlD~~~ 115 (680)
..+. ..-+||+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 5543 45689999874
No 424
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.92 E-value=0.047 Score=58.68 Aligned_cols=52 Identities=23% Similarity=0.148 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 9 EKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
..+.+.|.... ..-.++.|.|++|+|||||+.++++ ...+.-..++|+...+
T Consensus 250 ~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 250 VRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEE 301 (484)
T ss_pred HhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeC
Confidence 44555664422 3346899999999999999999998 4444555678887654
No 425
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.91 E-value=0.006 Score=53.62 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+|.+.|++|+||||+|++++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 426
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0062 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.--++|.|++|+||||++..++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 34689999999999999999997
No 427
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.90 E-value=0.012 Score=50.19 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchh
Q 042863 5 DKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQR 51 (680)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~ 51 (680)
.++.+++.+.|.... ....++++.|+-|+||||+++.+++...
T Consensus 5 ~~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 5 EKAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345566666665422 2234899999999999999999998543
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.89 E-value=0.039 Score=51.54 Aligned_cols=121 Identities=10% Similarity=0.112 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHH---HHHHH-
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQR---ILRVC- 101 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~- 101 (680)
.++++|.|+.|.||||+.+.++.......- .+++.+.. .. -..+..+...+...+........... .+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~---G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQI---GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHc---CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 378999999999999999988653222211 11121111 00 12223333333222211111111111 11221
Q ss_pred -hCCceEEEEEecCCCC-ChhH----HHHHHHhcCCCCCCCEEEEecCchHHHHhhcc
Q 042863 102 -LNGKRYLLVMDDVWNE-DPKV----WDKLKSLLSGGAKGSKILVTTRSNKVASVMGT 153 (680)
Q Consensus 102 -l~~~~~llvlD~~~~~-~~~~----~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~ 153 (680)
+..++-++++|+.... ++.. ...+...+... +..+|++|-+..+......
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhhc
Confidence 2356789999998442 1211 12223333332 6779999998887766543
No 429
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.89 E-value=0.11 Score=48.75 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=41.9
Q ss_pred CcCHHHHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC--CCCCEEEEecCchHHHHhhc
Q 042863 88 DLDIEQLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG--AKGSKILVTTRSNKVASVMG 152 (680)
Q Consensus 88 ~~~~~~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~~~~ 152 (680)
+.+-.+.+ -.+.+.+-..+-+|+.|+-.. -|...-..+...+... ..|..||+.|-++.++..+.
T Consensus 142 eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34444333 456667778888899997532 3445555666665543 33667999999998887653
No 430
>PRK06217 hypothetical protein; Validated
Probab=95.89 E-value=0.023 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.|+|.|.+|+||||+|++++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 431
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.011 Score=50.03 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=54.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
.+.|.|.|.||+||||++.+++... . .-|++++.......++...=.+ -.....+.+.+...+.-.+...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~----~---~~~i~isd~vkEn~l~~gyDE~---y~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT----G---LEYIEISDLVKENNLYEGYDEE---YKCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh----C---CceEehhhHHhhhcchhccccc---ccCccccHHHHHHHHHHHHhcC
Confidence 4569999999999999999998621 1 3377666432222211111111 0123345566666666666544
Q ss_pred eEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhh
Q 042863 106 RYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVM 151 (680)
Q Consensus 106 ~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~ 151 (680)
..++ | - ..-.++|......-+++++-+.-+-..+
T Consensus 77 g~IV--D-y---------HgCd~FperwfdlVvVLr~~~s~LY~RL 110 (176)
T KOG3347|consen 77 GNIV--D-Y---------HGCDFFPERWFDLVVVLRTPNSVLYDRL 110 (176)
T ss_pred CcEE--e-e---------cccCccchhheeEEEEEecCchHHHHHH
Confidence 4333 2 1 1112344433344466777666544433
No 432
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.86 E-value=0.0062 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
++++.|++|+||||+++.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999999999873
No 433
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.052 Score=49.44 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+.++.||+|+||||+.+.+-+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3457999999999999999988743
No 434
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.85 E-value=0.017 Score=52.79 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=25.2
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS 65 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 65 (680)
+|+|.|.+|+||||+|+.++. ........+..++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~--~l~~~~~~~~~i~~D 36 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN--QLRVNGIGPVVISLD 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEehh
Confidence 478999999999999999987 433322234444433
No 435
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.84 E-value=0.039 Score=56.78 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..++|.||+|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3789999999999999999965
No 436
>PRK13695 putative NTPase; Provisional
Probab=95.84 E-value=0.011 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.++|.|++|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998763
No 437
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.83 E-value=0.07 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++++.|++|+||||+|+.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 378899999999999999987
No 438
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.82 E-value=0.13 Score=47.13 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=65.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC--------------------------------------
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-------------------------------------- 68 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 68 (680)
.+++|.||+|+|||||.|-+-.-... -.+.+|++.....
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 48999999999999999988653222 2334555431100
Q ss_pred ------CHHHHHHHHHHHhcCCC-----CCCcCHHHH-HHHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCC-CCC
Q 042863 69 ------GERQIMTKIIKSITGQN-----QGDLDIEQL-QRILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSG-GAK 134 (680)
Q Consensus 69 ------~~~~~~~~~~~~l~~~~-----~~~~~~~~~-~~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~-~~~ 134 (680)
..++...+++...+..+ +...+-.+. .-.+.+.+.-++-++.||+..+ -|++-...+...+.. ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 01122223333333221 223333333 3356667777788999999866 355554454444433 233
Q ss_pred CCEEEEecCchHHHHh
Q 042863 135 GSKILVTTRSNKVASV 150 (680)
Q Consensus 135 ~~~iiiTsR~~~~~~~ 150 (680)
|...++.|-+=.++..
T Consensus 186 GmTMivVTHEM~FAr~ 201 (240)
T COG1126 186 GMTMIIVTHEMGFARE 201 (240)
T ss_pred CCeEEEEechhHHHHH
Confidence 6666666655544443
No 439
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.047 Score=51.93 Aligned_cols=122 Identities=18% Similarity=0.301 Sum_probs=69.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc-----------C---CcEEEEE----eCCcC--C-----------------
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH-----------F---ELKIWIC----ISEDF--G----------------- 69 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----------~---~~~~~~~----~~~~~--~----------------- 69 (680)
..++|.||.|.|||||.+.+.--...... . ..+.|+. +...+ +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 58999999999999999999762110000 0 1244543 11100 0
Q ss_pred -----HHHHHHHHHHHhcCCC-----CCCcCHHHHHH-HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCC-CCCCC
Q 042863 70 -----ERQIMTKIIKSITGQN-----QGDLDIEQLQR-ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSG-GAKGS 136 (680)
Q Consensus 70 -----~~~~~~~~~~~l~~~~-----~~~~~~~~~~~-~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~-~~~~~ 136 (680)
..+...+.++..+... ....+-.|.++ .+.+.+...+-++++|+-.. -|......+..++.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 0133444444444322 23344455554 55667788889999998533 344454555555553 22277
Q ss_pred EEEEecCchHHH
Q 042863 137 KILVTTRSNKVA 148 (680)
Q Consensus 137 ~iiiTsR~~~~~ 148 (680)
.|++.|-+-...
T Consensus 191 tIl~vtHDL~~v 202 (254)
T COG1121 191 TVLMVTHDLGLV 202 (254)
T ss_pred EEEEEeCCcHHh
Confidence 899988776433
No 440
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.80 E-value=0.023 Score=61.04 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=66.5
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhc
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSIT 82 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (680)
|.......+.+.+...+ .....+.+.|+.|+||+++|+.+.+. ........+.+++.... . ..+ -..++
T Consensus 147 ~~S~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~--s~~~~~~~~~i~c~~~~-~-~~~---~~~lf 215 (457)
T PRK11361 147 TNSPAMMDICKDTAKIA----LSQASVLISGESGTGKELIARAIHYN--SRRAKGPFIKVNCAALP-E-SLL---ESELF 215 (457)
T ss_pred cccHHHhHHHHHHHHHc----CCCcEEEEEcCCCccHHHHHHHHHHh--CCCCCCCeEEEECCCCC-H-HHH---HHHhc
Confidence 33444444544444322 22346889999999999999988763 12222234455665432 1 211 22222
Q ss_pred CCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCch
Q 042863 83 GQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRSN 145 (680)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~~ 145 (680)
+.......-+. ............-.|++|++..........+..++.... .+.+||.||...
T Consensus 216 g~~~~~~~~~~-~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 216 GHEKGAFTGAQ-TLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred CCCCCCCCCCC-CCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 21110000000 000000011223468999998877777777777665321 236888888643
No 441
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.091 Score=49.97 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=37.8
Q ss_pred CchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC
Q 042863 3 GRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF 56 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~ 56 (680)
|-++++++|.+..+-+-+ -+-..++-|.+||++|.|||-||+++++ +....|
T Consensus 189 Gle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATF 247 (440)
T KOG0726|consen 189 GLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATF 247 (440)
T ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhh
Confidence 457788888887754321 1124567899999999999999999999 444443
No 442
>PRK06762 hypothetical protein; Provisional
Probab=95.79 E-value=0.0076 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+++|+|.|++|+||||+|+++++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 443
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.79 E-value=0.018 Score=54.45 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC
Q 042863 7 DREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG 69 (680)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (680)
+.+++.+.+... .++..+|+|.|+||+|||||+.++....+.+.+--+++=++-+..++
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 445566666542 35678999999999999999999998544332323344444443343
No 444
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.77 E-value=0.0034 Score=61.43 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.+.++|++|+|||++++.+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCchhHHHHhhhc
Confidence 36789999999999999999886
No 445
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.73 E-value=0.011 Score=54.61 Aligned_cols=22 Identities=27% Similarity=0.099 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
++.|+|+.|.||||+.+.++..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999999853
No 446
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.72 E-value=0.12 Score=48.85 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..++|.|+.|.|||||++.++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 447
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.069 Score=50.50 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 97 ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 97 ~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
.+.+.+..++-++++|+-.. .|......+...+.....+..||++|-+.....
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~ 193 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 33444556677999998744 345555555555554322456888887766543
No 448
>PRK06547 hypothetical protein; Provisional
Probab=95.71 E-value=0.015 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.....|+|.|++|+||||+|+.++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999873
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.71 E-value=0.06 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+..|+|++|+|||+||..++.+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999874
No 450
>PF13245 AAA_19: Part of AAA domain
Probab=95.68 E-value=0.037 Score=42.13 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=17.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++.|.|++|.|||+++.+.+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34677899999999966655554
No 451
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.68 E-value=0.088 Score=49.26 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHHHh
Q 042863 98 LRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVASV 150 (680)
Q Consensus 98 ~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~~~ 150 (680)
+.+.+...+-++++|+-.. .|....+.+...+... ..+..||++|.+......
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 3344455667999998754 4455555565555542 236678888887755443
No 452
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.68 E-value=0.024 Score=62.13 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=52.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+++.++.+...+... +.+.++|++|+||||+|+.+++.. ....++.++|... ...+....++.+..+
T Consensus 33 vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 33 VIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 478888888888877541 379999999999999999998742 2333566778755 334666666666665
Q ss_pred hcC
Q 042863 81 ITG 83 (680)
Q Consensus 81 l~~ 83 (680)
++.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 543
No 453
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.67 E-value=0.032 Score=54.29 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHhhc
Q 042863 29 IPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~ 48 (680)
|++.|.+|+||||+|++++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 454
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.67 E-value=0.12 Score=55.62 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=77.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhh-hhcC-----CcEEEEEeCC-----cCC------------HHHHHHHHHHHhcC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRV-EEHF-----ELKIWICISE-----DFG------------ERQIMTKIIKSITG 83 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~~-----~~~~~~~~~~-----~~~------------~~~~~~~~~~~l~~ 83 (680)
..|+|.|+.|+|||||.+.++..... .... -.+.|++-.. ..+ .....+..+..++-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 36899999999999999999542111 1100 1122332111 001 13344444544442
Q ss_pred CCCC------CcCHH-HHHHHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhccCC
Q 042863 84 QNQG------DLDIE-QLQRILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGTRG 155 (680)
Q Consensus 84 ~~~~------~~~~~-~~~~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~~~ 155 (680)
.... ..+-. ...-.+...+..++=++|+|+-.+ -|....+.+...+..+. |+ ||+.|-++.+......
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va~-- 504 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVAT-- 504 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhcc--
Confidence 2211 12222 233344555567788999998766 47778888888888887 54 8888888877665443
Q ss_pred CCCceeCCC
Q 042863 156 GTTGYNLQG 164 (680)
Q Consensus 156 ~~~~~~l~~ 164 (680)
+.+.+.+
T Consensus 505 --~i~~~~~ 511 (530)
T COG0488 505 --RIWLVED 511 (530)
T ss_pred --eEEEEcC
Confidence 5566654
No 455
>PRK13949 shikimate kinase; Provisional
Probab=95.65 E-value=0.11 Score=47.01 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|+|++|+||||+++.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 456
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.09 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.+++|.|+.|+|||||++.++..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999999864
No 457
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.63 E-value=0.014 Score=54.13 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 29 IPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
+.|.|++|+|||+++.+++. ...+.-..++|++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~--~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY--AGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCC
Confidence 68899999999999999987 3334445688887654
No 458
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.62 E-value=0.083 Score=47.00 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..++.+|+|..|+|||||...++..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh
Confidence 4579999999999999999988754
No 459
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.61 E-value=0.016 Score=53.13 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|.+...+.+.-.... ...+.++|++|+|||++|+.+..
T Consensus 5 I~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp SSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 36777777776665532 25899999999999999999854
No 460
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.61 E-value=0.11 Score=50.59 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=61.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc---CC---cEEEEEeCCcC------CHH-----------HHHHHHHHHhcC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH---FE---LKIWICISEDF------GER-----------QIMTKIIKSITG 83 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---~~---~~~~~~~~~~~------~~~-----------~~~~~~~~~l~~ 83 (680)
.+++|.|+.|.|||||++.++........ ++ .+.|+.-.... +.. .....+++.++.
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 47999999999999999999863211110 11 12333211000 111 112233333332
Q ss_pred CC-----CCCcCHHHHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC--CCCCEEEEecCchHHH
Q 042863 84 QN-----QGDLDIEQLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG--AKGSKILVTTRSNKVA 148 (680)
Q Consensus 84 ~~-----~~~~~~~~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~ 148 (680)
.. ....+..+.+ -.+.+.+..++-++++|+... .|......+...+... ..+..||++|-+....
T Consensus 111 ~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i 184 (251)
T PRK09544 111 GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184 (251)
T ss_pred hHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 21 1223333322 234444555677999998754 3444445555554432 1155677777776544
No 461
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.60 E-value=0.066 Score=55.06 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=30.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
.+++|.|.||.|||.||..++...........+.++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 4789999999999999999998431144555667776654
No 462
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.43 Score=45.75 Aligned_cols=129 Identities=10% Similarity=0.056 Sum_probs=71.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC------CCCcCHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN------QGDLDIEQLQRILR 99 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~ 99 (680)
+....++|+.|+||.++|.++++.. ....-. ...+.....+.+...-+++. ......+++.+...
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~l-lC~~~~--------~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~ 77 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSI-VCTKAN--------GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIIN 77 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHH-cCCCCC--------CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHH
Confidence 4567889999999999999998631 111100 01111122222222222211 11233444443333
Q ss_pred HHh----C-CceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCCCCCceeCCCC
Q 042863 100 VCL----N-GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRGGTTGYNLQGL 165 (680)
Q Consensus 100 ~~l----~-~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~~~~~~~l~~l 165 (680)
... . +.+=++|+|+++.........+.-.+-.-+.++.+|++|.++ .+...... ++..+.+++.
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~S--RCq~~~~~~~ 147 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILS--RCVQYVVLSK 147 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhh--heeeeecCCh
Confidence 321 1 234577899998888888888888888766677777777655 33333322 3455666665
No 463
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.31 Score=54.27 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
.+++.++|+.|+||||++..++..+........+..++..... ...+-+....+.++.+.....+.+++.+.+.+. ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence 4799999999999999999999743222222345555544322 122444455555554444445666666666543 33
Q ss_pred ceEEEEEecCC
Q 042863 105 KRYLLVMDDVW 115 (680)
Q Consensus 105 ~~~llvlD~~~ 115 (680)
. -+|++|-..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 488888774
No 464
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.55 E-value=0.091 Score=57.62 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..++|+|+.|+|||||++.+..-
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999763
No 465
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.55 E-value=0.013 Score=55.02 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 21 GESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 21 ~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+...++..+.++|++|.||||..+++..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHH
Confidence 3456788999999999999999999987
No 466
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.55 E-value=0.02 Score=51.61 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHhhc
Q 042863 29 IPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~ 48 (680)
+++.|++|+||||+|+.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 467
>PTZ00301 uridine kinase; Provisional
Probab=95.54 E-value=0.028 Score=52.66 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+|+|.|++|+||||||+.++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 6899999999999999998876
No 468
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.52 E-value=0.12 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.+++|.|+.|+|||||++.++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 469
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.51 E-value=0.075 Score=53.37 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=29.5
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
.+.+.+|+|.|++|+|||||+..+... ....-..+.-+....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~--l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMH--LIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeCC
Confidence 356789999999999999999998873 333222344444443
No 470
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.0016 Score=61.17 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=18.3
Q ss_pred CCCCcccceecccccCCcccchhhhhhhcccCCccceee
Q 042863 581 TTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLV 619 (680)
Q Consensus 581 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~ 619 (680)
.++|+|+.|.|..|+=-...+......-++.+|+|++||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 344555555555444333333333333444555555553
No 471
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.50 E-value=0.2 Score=51.18 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcCCHHHHHH---HH
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDFGERQIMT---KI 77 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~ 77 (680)
+|-...++++.+.+.... ..-..|.|.|+.|.||+.+|+.++. .-.+ .-...+-++|.....-..... --
T Consensus 81 IG~~~~~~~~~eqik~~a----p~~~~vLi~GetGtGKel~A~~iH~--~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~ 154 (403)
T COG1221 81 IGESPSLQELREQIKAYA----PSGLPVLIIGETGTGKELFARLIHA--LSARRAEAPFIAFNCAAYSENLQEAELFGHE 154 (403)
T ss_pred hccCHHHHHHHHHHHhhC----CCCCcEEEecCCCccHHHHHHHHHH--hhhcccCCCEEEEEHHHhCcCHHHHHHhccc
Confidence 566777777777776633 3345789999999999999999984 2222 223344556655433322222 00
Q ss_pred HHHhcC-CCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCch
Q 042863 78 IKSITG-QNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSN 145 (680)
Q Consensus 78 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~ 145 (680)
-..+.+ ...... .+. +...=.+++|++++..+.....+..++... ...+++|-.|-..
T Consensus 155 kGaftGa~~~k~G-------lfe---~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 155 KGAFTGAQGGKAG-------LFE---QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTED 224 (403)
T ss_pred cceeecccCCcCc-------hhe---ecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccC
Confidence 011111 111110 000 111236779999998887777777776642 2345566555433
Q ss_pred HHHHhhc-----cCCCCCceeCCCCChh
Q 042863 146 KVASVMG-----TRGGTTGYNLQGLPLE 168 (680)
Q Consensus 146 ~~~~~~~-----~~~~~~~~~l~~l~~~ 168 (680)
....... ..-....+.||||.+.
T Consensus 225 l~~~~~~g~dl~~rl~~~~I~LPpLrER 252 (403)
T COG1221 225 LEEAVLAGADLTRRLNILTITLPPLRER 252 (403)
T ss_pred HHHHHHhhcchhhhhcCceecCCChhhc
Confidence 2222211 1112345789998775
No 472
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.49 E-value=0.081 Score=57.96 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
++..|.|.+|.||||+++++...
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~ 190 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA 190 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999998873
No 473
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.47 E-value=0.012 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.++.+|+|.|++|+|||||++.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999873
No 474
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.47 E-value=0.23 Score=48.44 Aligned_cols=115 Identities=14% Similarity=0.026 Sum_probs=60.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhc--CCCCC------CcCHHHHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSIT--GQNQG------DLDIEQLQR 96 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~------~~~~~~~~~ 96 (680)
....++|.|++|.|||||.+.++.. .. ...+.++++...-.... ...++..... .+... ....... .
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d-~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~-~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVD-ERSEIAGCVNGVPQHDVGIRTDVLDGCPKA-E 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecch-hHHHHHHHhcccccccccccccccccchHH-H
Confidence 3468999999999999999999973 22 22344454322211111 1122222221 11110 0011111 1
Q ss_pred HHHHHh-CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 97 ILRVCL-NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 97 ~~~~~l-~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
.+...+ ...+-++++|+.. .......+...+. .|..+|+||-+..+..
T Consensus 185 ~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 222332 2567899999984 3444444444442 3677999998665543
No 475
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.46 E-value=0.12 Score=49.55 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=37.1
Q ss_pred cCHHHHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC--CCCCEEEEecCchHHHHh
Q 042863 89 LDIEQLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG--AKGSKILVTTRSNKVASV 150 (680)
Q Consensus 89 ~~~~~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~~ 150 (680)
.+-.+.+ -.+.+.+....-++++|+-.. -|......+...+... ..+..||+++-+...+..
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r 204 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR 204 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 3444444 456667788888999998643 2333334444444432 236668888888765543
No 476
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.45 E-value=0.074 Score=50.66 Aligned_cols=52 Identities=29% Similarity=0.354 Sum_probs=31.9
Q ss_pred HHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 98 LRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 98 ~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
+.+.+...+-++++|+... .|......+...+.....+..||++|.+.....
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 3444556678999998754 445555555555544322456888888776543
No 477
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.44 E-value=0.11 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999886
No 478
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.43 E-value=0.027 Score=52.79 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..++|.|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 479
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.41 E-value=0.057 Score=60.12 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCC-CCEEEEecCchHHH
Q 042863 97 ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAK-GSKILVTTRSNKVA 148 (680)
Q Consensus 97 ~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~-~~~iiiTsR~~~~~ 148 (680)
.+.+.+-.++-++++|+... -|...-..+...+..... ...|+||=|.+-+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 45566677788999999855 344555566666665443 44566666665443
No 480
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.47 Score=47.81 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=36.2
Q ss_pred CCCceeCCCCChhhHHHHHHHHhcccCCC-CCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 156 GTTGYNLQGLPLEDCLSLFMKCAFKEERD-KHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 156 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
...+++++..+.+|+.++..=+....-.. ..+. ++--.++.-.++|+|..+..+++.+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~-Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG-EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc-ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 34568899999999988776443222000 0110 1233577888899998887777665
No 481
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.40 E-value=0.02 Score=57.18 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=31.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQ 72 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (680)
|++++.|.||+||||+|...+. ..++.-..+.-++.....+...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~--~~A~~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL--ALARRGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTTS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH--HHhhCCCCeeEeecCCCccHHH
Confidence 5899999999999999988876 4444444577777665544443
No 482
>PRK04040 adenylate kinase; Provisional
Probab=95.38 E-value=0.014 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+|+|+|++|+||||+++.++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 483
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.38 E-value=0.17 Score=48.96 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=63.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhh---cCC--cEEEEEeC----CcCCHHHHH--------------HHHHHHhcC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEE---HFE--LKIWICIS----EDFGERQIM--------------TKIIKSITG 83 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~~~--~~~~~~~~----~~~~~~~~~--------------~~~~~~l~~ 83 (680)
.+++|.|+.|+|||||++.++....... .++ .+.++.-. ...+..+.+ .+++..++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 5899999999999999999986422111 011 12233211 111222221 122222221
Q ss_pred C-----CCCCcCHHHHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC--CCCCEEEEecCchHHHH
Q 042863 84 Q-----NQGDLDIEQLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG--AKGSKILVTTRSNKVAS 149 (680)
Q Consensus 84 ~-----~~~~~~~~~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~ 149 (680)
. .....+-.+.+ -.+...+...+-++++|+-.. .|......+...+... ..+..||++|-+.....
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1 11223333333 234455666778999998754 3444445555554432 22556888887765444
No 484
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.38 E-value=0.047 Score=55.09 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=39.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhh----cCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEE----HFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
.-.++-|+|++|+|||+++.+++....... .-..++|++....+....+ .+++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl-~~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI-MQMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH-HHHHHHc
Confidence 357888999999999999999987433211 1126899998887776654 3444444
No 485
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.37 E-value=0.26 Score=46.41 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHH
Q 042863 98 LRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVA 148 (680)
Q Consensus 98 ~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~ 148 (680)
+.+.+...+-++++|+... .|....+.+...+.....+..+|++|.+....
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 3444455667888998754 34555555555555433356677777776544
No 486
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.37 E-value=0.18 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|.|||||++.++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999975
No 487
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.34 E-value=0.045 Score=60.19 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=47.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++|+++..+.+...+... +.+.++|++|+|||++|+.++. .... .|..++++.-. ..+....++.+..
T Consensus 20 viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~ 88 (608)
T TIGR00764 20 VIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEVPA 88 (608)
T ss_pred ccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHHHH
Confidence 468888888888877541 3778999999999999999997 4333 33334444322 2344455666665
Q ss_pred Hhc
Q 042863 80 SIT 82 (680)
Q Consensus 80 ~l~ 82 (680)
+++
T Consensus 89 ~~g 91 (608)
T TIGR00764 89 GEG 91 (608)
T ss_pred hhc
Confidence 554
No 488
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.33 E-value=0.025 Score=55.48 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=35.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
..-+++.|+|++|+|||+++.+++. +..+....++|++...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC
Confidence 4457999999999999999999998 6566677899998875
No 489
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.32 E-value=0.089 Score=52.77 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 98 LRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 98 ~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
+.+.+-..+-++++|+-.. .|+.....+...+.....+..||++|.+.....
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 4445556678999998754 455555555555444333566899998876443
No 490
>PRK15453 phosphoribulokinase; Provisional
Probab=95.31 E-value=0.09 Score=50.84 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=43.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC--CHHHHHHHH--HHHhcCC----CCCCcCHHHHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF--GERQIMTKI--IKSITGQ----NQGDLDIEQLQR 96 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~l~~~----~~~~~~~~~~~~ 96 (680)
...+|+|.|.+|+||||+|+.+++ .++..-..+..++..... +..+.-..+ ...-+.. .+...+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 457999999999999999999986 333322235555544432 222221111 1111111 134456677777
Q ss_pred HHHHHhC
Q 042863 97 ILRVCLN 103 (680)
Q Consensus 97 ~~~~~l~ 103 (680)
.++...+
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 7777654
No 491
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.31 E-value=0.12 Score=48.41 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=60.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC--CHH-------------------HHHHHHHHHhcCCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF--GER-------------------QIMTKIIKSITGQN 85 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~l~~~~ 85 (680)
.+++|.|+.|.|||||++.++..... ....+.+.++..... ... ....+.+. ..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----~~ 101 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKY-EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR----YV 101 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcC-CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh----hc
Confidence 58999999999999999998874100 111122222211000 000 00111111 11
Q ss_pred CCCcCHHHHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC-CCCCEEEEecCchHHHH
Q 042863 86 QGDLDIEQLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG-AKGSKILVTTRSNKVAS 149 (680)
Q Consensus 86 ~~~~~~~~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~~~~~ 149 (680)
....+..+.+ -.+.+.+...+-++++|+... .|......+...+... ..+..||++|.+.....
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1233333333 334455566778999998754 4455555555554432 22556888887776544
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.31 E-value=0.016 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+|+|.|++|+|||||++.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999987
No 493
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.28 E-value=0.015 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++|+|.|++|+||||+|+.++.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 494
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.28 E-value=0.033 Score=55.44 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (680)
.+++++.|.||+||||+|...+- ........++-++.....+...++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999987765 55555455777777776666655544
No 495
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.27 E-value=0.076 Score=49.77 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHHHhCCceEEEEEecCCC-CChhHHH-HHHHhcCCCCC--CCEEEEecCchHHHH
Q 042863 98 LRVCLNGKRYLLVMDDVWN-EDPKVWD-KLKSLLSGGAK--GSKILVTTRSNKVAS 149 (680)
Q Consensus 98 ~~~~l~~~~~llvlD~~~~-~~~~~~~-~l~~~l~~~~~--~~~iiiTsR~~~~~~ 149 (680)
+.+.+...+-++++|+... .++.... .+...+..... +..||++|.+.....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 4455667788999999854 3444444 45555543221 445888887776543
No 496
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.26 E-value=0.2 Score=47.62 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCchHHH
Q 042863 98 LRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRSNKVA 148 (680)
Q Consensus 98 ~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~ 148 (680)
+.+.+...+-++|+|+-.. -|......+...+.....+..||++|.+....
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 3334445667999998744 44555555555555433235688888877654
No 497
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.11 Score=53.99 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
...+++++|+.|+||||++..++...........+.++...... ...+-+....+.++.+.....+.......+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 34799999999999999999988732222222334444433311 12222334444444443333344444333333 33
Q ss_pred CceEEEEEecC
Q 042863 104 GKRYLLVMDDV 114 (680)
Q Consensus 104 ~~~~llvlD~~ 114 (680)
+ .-++++|-.
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 345667765
No 498
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.23 E-value=0.11 Score=53.41 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=61.3
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-------CHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-------GERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 74 (680)
|||+.+++.+.+-|..-+ .++...-+|.|.-|.|||.+++.+.. ...++--.+..++++... ....++
T Consensus 28 VGr~~e~~~l~~~l~~v~---~G~s~~kfi~G~YGsGKTf~l~~i~~--~A~~~~fvvs~v~ls~e~~lh~~~g~~~~~Y 102 (416)
T PF10923_consen 28 VGREREIEALDRDLDRVA---DGGSSFKFIRGEYGSGKTFFLRLIRE--RALEKGFVVSEVDLSPERPLHGTGGQLEALY 102 (416)
T ss_pred echHHHHHHHHHHHHHHh---CCCCeEEEEEeCCCCcHHHHHHHHHH--HHHHcCCEEEEEecCCCcccccccccHHHHH
Confidence 899999999999998643 35567888999999999999998876 443333357788777632 234678
Q ss_pred HHHHHHhcCCCCCCc
Q 042863 75 TKIIKSITGQNQGDL 89 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~ 89 (680)
+++++.+.....++.
T Consensus 103 r~l~~nL~t~~~p~G 117 (416)
T PF10923_consen 103 RELMRNLSTKTKPEG 117 (416)
T ss_pred HHHHHhcCCCCCCCc
Confidence 888888876654443
No 499
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.22 E-value=0.062 Score=54.04 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHhhcc
Q 042863 29 IPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+++.|.+|+||||+++.++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 500
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.21 E-value=0.19 Score=46.04 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEE
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWIC 63 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 63 (680)
+.++.+.+.+... ...+.+.+.++.|.|||.++..++. +... .++|+.
T Consensus 10 ~ai~~i~~~~~~~-----~~~~~~ll~~~tGsGKT~~~~~~~~--~l~~---~~l~~~ 57 (184)
T PF04851_consen 10 EAIARIINSLENK-----KEERRVLLNAPTGSGKTIIALALIL--ELAR---KVLIVA 57 (184)
T ss_dssp HHHHHHHHHHHTT-----SGCSEEEEEESTTSSHHHHHHHHHH--HHHC---EEEEEE
T ss_pred HHHHHHHHHHHhc-----CCCCCEEEEECCCCCcChhhhhhhh--cccc---ceeEec
Confidence 4445555555431 2356899999999999999988766 3333 566664
Done!