Query 042863
Match_columns 680
No_of_seqs 271 out of 3499
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.1E-38 7.3E-43 344.4 25.9 316 2-343 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-31 4.5E-36 293.5 20.2 283 2-335 131-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1E-30 3.6E-35 315.3 28.5 308 1-342 126-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.8E-30 2.7E-34 281.8 27.1 303 1-340 126-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.8E-24 6E-29 245.9 15.6 296 354-669 393-766 (768)
6 4fcg_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 209.5 16.7 223 379-623 80-311 (328)
7 1ogq_A PGIP-2, polygalacturona 99.9 8.1E-24 2.8E-28 213.6 11.2 251 380-649 50-306 (313)
8 3v47_A TOLL-like receptor 5B a 99.9 1.7E-22 5.7E-27 216.1 20.0 300 353-676 28-408 (455)
9 3rgz_A Protein brassinosteroid 99.9 1.7E-22 5.8E-27 229.6 19.2 259 406-675 393-716 (768)
10 2id5_A Lingo-1, leucine rich r 99.9 2.1E-22 7.2E-27 216.6 18.2 274 351-644 28-306 (477)
11 1ogq_A PGIP-2, polygalacturona 99.9 9.6E-23 3.3E-27 205.7 13.3 253 355-629 50-307 (313)
12 4fcg_A Uncharacterized protein 99.9 2.7E-22 9.1E-27 203.6 15.9 218 405-642 79-309 (328)
13 4eco_A Uncharacterized protein 99.9 1.7E-22 5.8E-27 224.2 15.2 265 399-677 198-527 (636)
14 3o6n_A APL1; leucine-rich repe 99.9 2.5E-21 8.7E-26 202.3 20.9 263 355-645 45-350 (390)
15 4fmz_A Internalin; leucine ric 99.9 6.7E-21 2.3E-25 195.8 23.1 278 355-676 66-346 (347)
16 4ecn_A Leucine-rich repeat pro 99.9 7.4E-22 2.5E-26 222.7 17.1 264 399-677 440-767 (876)
17 3oja_B Anopheles plasmodium-re 99.9 2E-21 7E-26 214.3 20.1 266 355-646 51-357 (597)
18 3v47_A TOLL-like receptor 5B a 99.9 7.1E-22 2.4E-26 211.3 14.8 271 355-646 54-407 (455)
19 2id5_A Lingo-1, leucine rich r 99.9 4.4E-21 1.5E-25 206.2 20.7 246 380-645 32-283 (477)
20 4eco_A Uncharacterized protein 99.9 2.6E-21 8.8E-26 214.7 19.3 303 355-677 249-601 (636)
21 4ecn_A Leucine-rich repeat pro 99.9 7.4E-21 2.5E-25 214.6 21.4 129 378-512 489-630 (876)
22 4fmz_A Internalin; leucine ric 99.9 1.7E-20 5.8E-25 192.8 22.4 280 355-677 44-325 (347)
23 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-20 1.2E-24 196.5 22.4 257 355-647 64-320 (457)
24 1xku_A Decorin; proteoglycan, 99.8 2.2E-20 7.6E-25 190.4 19.6 263 380-672 52-328 (330)
25 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-20 5.8E-25 204.1 19.8 129 353-490 19-150 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.8E-20 6.2E-25 205.6 19.9 130 352-490 49-181 (562)
27 3j0a_A TOLL-like receptor 5; m 99.8 3.9E-20 1.3E-24 212.4 22.8 181 353-536 22-215 (844)
28 3t6q_A CD180 antigen; protein- 99.8 2.9E-20 9.9E-25 206.3 20.8 158 351-512 29-190 (606)
29 3o6n_A APL1; leucine-rich repe 99.8 5.6E-20 1.9E-24 192.1 20.8 266 378-676 43-352 (390)
30 1xku_A Decorin; proteoglycan, 99.8 4.8E-20 1.6E-24 187.8 19.4 272 352-644 49-329 (330)
31 2ft3_A Biglycan; proteoglycan, 99.8 3.4E-20 1.2E-24 189.0 18.4 261 380-671 54-328 (332)
32 3t6q_A CD180 antigen; protein- 99.8 1.8E-20 6.1E-25 208.1 17.2 200 356-560 255-460 (606)
33 1ziw_A TOLL-like receptor 3; i 99.8 7.5E-20 2.6E-24 205.8 21.8 206 351-560 21-259 (680)
34 3oja_B Anopheles plasmodium-re 99.8 6.5E-20 2.2E-24 202.3 20.1 266 378-676 49-358 (597)
35 3vq2_A TLR4, TOLL-like recepto 99.8 6E-20 2.1E-24 203.8 19.7 248 376-646 281-557 (606)
36 2ft3_A Biglycan; proteoglycan, 99.8 7.7E-20 2.6E-24 186.4 18.8 271 353-645 52-331 (332)
37 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-19 4.1E-24 197.4 19.2 144 358-513 3-150 (520)
38 1o6v_A Internalin A; bacterial 99.8 1.1E-18 3.7E-23 186.7 24.0 289 355-676 68-388 (466)
39 3bz5_A Internalin-J, INLJ; leu 99.8 9.4E-19 3.2E-23 185.6 23.1 280 355-677 42-332 (457)
40 2z80_A TOLL-like receptor 2, v 99.8 8E-20 2.7E-24 188.0 14.2 252 380-647 52-314 (353)
41 2z81_A CD282 antigen, TOLL-lik 99.8 7.3E-20 2.5E-24 200.6 14.7 135 354-492 25-162 (549)
42 2z81_A CD282 antigen, TOLL-lik 99.8 1.4E-19 4.7E-24 198.4 16.4 118 355-476 50-170 (549)
43 3vq2_A TLR4, TOLL-like recepto 99.8 3.2E-19 1.1E-23 198.0 19.2 295 356-676 205-558 (606)
44 1o6v_A Internalin A; bacterial 99.8 1.4E-18 4.8E-23 185.8 23.0 260 355-647 112-388 (466)
45 3j0a_A TOLL-like receptor 5; m 99.8 5E-19 1.7E-23 203.2 20.5 272 354-645 47-373 (844)
46 2z66_A Variable lymphocyte rec 99.8 9.6E-20 3.3E-24 183.5 12.5 222 407-645 28-259 (306)
47 2z66_A Variable lymphocyte rec 99.8 4.4E-19 1.5E-23 178.7 17.3 227 380-626 28-261 (306)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9E-19 3.1E-23 192.1 20.8 144 358-513 34-181 (562)
49 3zyi_A Leucine-rich repeat-con 99.8 1.2E-18 3.9E-23 185.7 19.6 156 402-559 94-252 (452)
50 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6.2E-23 183.5 19.8 224 380-624 64-290 (440)
51 2z63_A TOLL-like receptor 4, v 99.8 6.6E-19 2.3E-23 194.0 17.0 158 351-512 24-188 (570)
52 2z63_A TOLL-like receptor 4, v 99.8 3.7E-19 1.3E-23 196.0 14.9 265 357-647 259-531 (570)
53 3zyj_A Leucine-rich repeat-con 99.8 9.8E-19 3.4E-23 185.5 16.6 230 351-596 60-291 (440)
54 3zyi_A Leucine-rich repeat-con 99.8 1.2E-18 3.9E-23 185.7 16.6 229 351-595 71-301 (452)
55 1ziw_A TOLL-like receptor 3; i 99.8 2.6E-18 9E-23 193.2 19.6 177 380-559 25-205 (680)
56 1ozn_A Reticulon 4 receptor; N 99.8 6.6E-18 2.2E-22 168.1 19.3 205 406-626 31-238 (285)
57 1ozn_A Reticulon 4 receptor; N 99.8 4.9E-18 1.7E-22 169.0 18.2 204 379-597 31-238 (285)
58 2z80_A TOLL-like receptor 2, v 99.8 3.9E-19 1.3E-23 182.9 9.2 260 352-629 49-317 (353)
59 3o53_A Protein LRIM1, AGAP0063 99.8 4.4E-18 1.5E-22 171.9 16.6 244 374-649 28-277 (317)
60 3oja_A Leucine-rich immune mol 99.8 4.8E-18 1.6E-22 181.8 16.7 214 381-626 35-250 (487)
61 1z7x_W Ribonuclease inhibitor; 99.8 9.2E-20 3.2E-24 195.2 3.4 264 354-624 2-295 (461)
62 1wwl_A Monocyte differentiatio 99.8 1.5E-19 5E-24 182.4 4.6 83 429-512 94-184 (312)
63 2ast_B S-phase kinase-associat 99.8 3.7E-19 1.2E-23 182.0 7.1 154 407-560 70-233 (336)
64 3rfs_A Internalin B, repeat mo 99.8 6.4E-18 2.2E-22 166.7 15.6 178 377-560 38-216 (272)
65 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-17 5.6E-22 185.4 20.8 137 350-490 47-185 (635)
66 1p9a_G Platelet glycoprotein I 99.8 1.6E-17 5.6E-22 165.1 17.1 198 377-595 7-206 (290)
67 3oja_A Leucine-rich immune mol 99.7 5.3E-18 1.8E-22 181.5 13.9 216 403-647 30-250 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.7 5E-18 1.7E-22 171.6 12.4 150 402-560 29-180 (317)
69 2z62_A TOLL-like receptor 4, v 99.7 1.6E-17 5.3E-22 164.6 15.3 203 407-626 28-237 (276)
70 3g06_A SSPH2 (leucine-rich rep 99.7 7.7E-17 2.6E-21 175.9 21.4 113 406-536 80-192 (622)
71 4glp_A Monocyte differentiatio 99.7 4E-17 1.4E-21 164.4 16.5 221 381-625 65-306 (310)
72 3rfs_A Internalin B, repeat mo 99.7 2.6E-17 9E-22 162.3 14.5 209 403-638 37-247 (272)
73 2o6q_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 157.5 18.8 198 409-625 18-217 (270)
74 2ast_B S-phase kinase-associat 99.7 3.8E-18 1.3E-22 174.4 8.3 251 357-634 49-314 (336)
75 1wwl_A Monocyte differentiatio 99.7 3.2E-17 1.1E-21 165.2 14.9 200 404-625 92-308 (312)
76 1jl5_A Outer protein YOPM; leu 99.7 3.5E-17 1.2E-21 173.3 14.8 256 355-644 11-287 (454)
77 1z7x_W Ribonuclease inhibitor; 99.7 9.6E-19 3.3E-23 187.3 2.3 310 356-676 29-411 (461)
78 2xwt_C Thyrotropin receptor; s 99.7 6.2E-17 2.1E-21 156.4 13.4 198 408-646 32-238 (239)
79 2qen_A Walker-type ATPase; unk 99.7 9.8E-16 3.4E-20 157.4 23.0 291 1-336 14-349 (350)
80 1jl5_A Outer protein YOPM; leu 99.7 3.4E-16 1.2E-20 165.7 20.0 118 407-536 131-248 (454)
81 1h6u_A Internalin H; cell adhe 99.7 1.6E-16 5.5E-21 159.5 16.2 147 403-559 59-205 (308)
82 2ca6_A RAN GTPase-activating p 99.7 2.9E-18 9.9E-23 178.7 3.5 245 372-628 24-318 (386)
83 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.8E-21 154.7 13.6 175 380-560 31-216 (239)
84 4g8a_A TOLL-like receptor 4; l 99.7 3.7E-16 1.3E-20 174.4 19.5 130 380-512 52-184 (635)
85 2o6q_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 155.6 14.7 197 381-595 17-216 (270)
86 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.2E-21 158.0 13.0 200 381-595 29-235 (276)
87 1p9a_G Platelet glycoprotein I 99.7 6E-16 2.1E-20 153.7 17.1 202 403-626 6-208 (290)
88 1w5s_A Origin recognition comp 99.7 1.5E-15 5.1E-20 159.8 20.9 302 1-317 24-372 (412)
89 1h6u_A Internalin H; cell adhe 99.7 4.6E-16 1.6E-20 156.2 15.6 193 403-625 37-229 (308)
90 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-15 5.2E-20 165.8 20.8 234 353-645 59-295 (622)
91 3ogk_B Coronatine-insensitive 99.7 4.4E-17 1.5E-21 180.2 8.1 134 356-490 165-305 (592)
92 4glp_A Monocyte differentiatio 99.7 1.6E-16 5.6E-21 159.9 9.9 221 356-595 65-305 (310)
93 2fna_A Conserved hypothetical 99.6 1E-14 3.4E-19 150.3 22.6 292 1-335 15-356 (357)
94 2ca6_A RAN GTPase-activating p 99.6 3.4E-17 1.2E-21 170.6 3.9 260 355-623 32-340 (386)
95 3ogk_B Coronatine-insensitive 99.6 1.5E-16 5.2E-21 175.9 8.2 288 356-645 113-474 (592)
96 3m19_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 144.0 16.9 150 408-560 15-166 (251)
97 3goz_A Leucine-rich repeat-con 99.6 6.7E-17 2.3E-21 166.6 2.8 249 371-627 13-298 (362)
98 3goz_A Leucine-rich repeat-con 99.6 1.2E-16 3.9E-21 164.8 4.4 238 354-595 21-295 (362)
99 4ezg_A Putative uncharacterize 99.6 2.7E-15 9.4E-20 140.0 10.5 151 404-560 41-192 (197)
100 2p1m_B Transport inhibitor res 99.6 3.2E-16 1.1E-20 173.4 4.3 274 355-643 105-441 (594)
101 3m19_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 141.0 15.2 174 380-560 14-190 (251)
102 4ay9_X Follicle-stimulating ho 99.6 1.6E-14 5.5E-19 147.9 15.9 216 407-642 30-254 (350)
103 4ay9_X Follicle-stimulating ho 99.6 2.3E-14 7.9E-19 146.7 16.7 236 410-671 12-254 (350)
104 3cvr_A Invasion plasmid antige 99.6 1.7E-14 5.8E-19 155.5 15.3 189 407-631 59-248 (571)
105 2o6s_A Variable lymphocyte rec 99.6 2.9E-14 9.9E-19 134.3 14.9 173 409-602 9-183 (208)
106 1fnn_A CDC6P, cell division co 99.6 1.8E-13 6.2E-18 142.6 22.2 303 1-318 19-353 (389)
107 1h6t_A Internalin B; cell adhe 99.6 2.6E-14 8.9E-19 142.0 14.1 169 377-560 43-211 (291)
108 4ezg_A Putative uncharacterize 99.5 1.5E-14 5.1E-19 135.0 11.0 152 377-537 41-193 (197)
109 1h6t_A Internalin B; cell adhe 99.5 3.2E-14 1.1E-18 141.3 14.0 170 403-595 42-211 (291)
110 2v1u_A Cell division control p 99.5 2.7E-13 9.3E-18 141.2 21.7 296 1-317 21-352 (387)
111 2p1m_B Transport inhibitor res 99.5 1.5E-15 5.2E-20 168.0 3.4 280 355-648 66-416 (594)
112 1m9s_A Internalin B; cell inva 99.5 3.9E-14 1.3E-18 154.4 13.6 144 406-559 42-185 (605)
113 2v9t_B SLIT homolog 2 protein 99.5 7.4E-14 2.5E-18 132.5 13.8 149 410-560 14-163 (220)
114 1m9s_A Internalin B; cell inva 99.5 4.4E-14 1.5E-18 154.1 13.5 169 377-560 40-208 (605)
115 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 131.8 14.5 149 408-560 20-170 (229)
116 2qby_B CDC6 homolog 3, cell di 99.5 3.3E-13 1.1E-17 140.3 18.3 292 1-317 22-340 (384)
117 2o6s_A Variable lymphocyte rec 99.5 3.8E-14 1.3E-18 133.5 9.6 161 380-550 28-190 (208)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 1.7E-13 5.7E-18 130.0 13.3 149 410-560 14-164 (220)
119 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.9E-18 148.3 13.5 188 378-605 57-251 (571)
120 1njg_A DNA polymerase III subu 99.5 1.4E-12 4.9E-17 126.4 17.7 197 1-214 25-231 (250)
121 1dce_A Protein (RAB geranylger 99.5 1.3E-15 4.4E-20 165.2 -5.4 37 404-440 346-382 (567)
122 2chg_A Replication factor C sm 99.4 2.3E-12 7.9E-17 122.9 17.9 185 1-212 19-205 (226)
123 1xeu_A Internalin C; cellular 99.4 4.1E-13 1.4E-17 131.1 12.4 147 403-560 37-183 (263)
124 2qby_A CDC6 homolog 1, cell di 99.4 1.8E-12 6.3E-17 134.8 14.6 293 1-316 22-348 (386)
125 2ell_A Acidic leucine-rich nuc 99.4 6.7E-13 2.3E-17 120.2 9.8 131 404-537 21-159 (168)
126 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.5E-17 123.6 12.2 131 407-538 40-172 (229)
127 2xot_A Amphoterin-induced prot 99.4 6.9E-13 2.3E-17 136.3 9.7 153 407-560 39-200 (361)
128 4b8c_D Glucose-repressible alc 99.4 3.1E-13 1.1E-17 151.3 7.7 154 398-559 215-369 (727)
129 2v9t_B SLIT homolog 2 protein 99.4 1.6E-12 5.5E-17 123.2 11.5 130 407-537 32-164 (220)
130 2v70_A SLIT-2, SLIT homolog 2 99.4 1.8E-12 6.2E-17 122.9 11.8 151 383-539 14-167 (220)
131 2xot_A Amphoterin-induced prot 99.4 1.5E-12 5E-17 133.9 12.0 174 409-595 20-200 (361)
132 2je0_A Acidic leucine-rich nuc 99.4 8.9E-13 3E-17 116.7 8.9 127 404-533 14-148 (149)
133 1xeu_A Internalin C; cellular 99.4 1.4E-12 4.8E-17 127.3 11.1 151 376-540 37-187 (263)
134 1dce_A Protein (RAB geranylger 99.4 2.7E-14 9.2E-19 154.8 -2.0 175 377-560 346-544 (567)
135 4b8c_D Glucose-repressible alc 99.3 3.1E-13 1.1E-17 151.3 3.5 144 414-560 208-352 (727)
136 1w8a_A SLIT protein; signaling 99.3 1.2E-11 4.1E-16 114.5 11.6 127 410-538 11-139 (192)
137 2ell_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 115.2 8.0 129 429-560 23-158 (168)
138 2je0_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 113.3 7.1 127 428-557 15-148 (149)
139 1a9n_A U2A', U2A'; complex (nu 99.3 5.4E-12 1.9E-16 115.1 8.6 129 403-536 15-151 (176)
140 1sxj_B Activator 1 37 kDa subu 99.3 3.4E-11 1.2E-15 121.8 13.7 184 1-211 23-210 (323)
141 3sb4_A Hypothetical leucine ri 99.2 3.7E-11 1.3E-15 121.7 12.6 98 524-640 225-327 (329)
142 2wfh_A SLIT homolog 2 protein 99.2 5.2E-11 1.8E-15 110.1 11.8 123 410-536 13-137 (193)
143 1hqc_A RUVB; extended AAA-ATPa 99.2 2.9E-11 9.9E-16 122.3 9.4 181 1-214 14-214 (324)
144 1a9n_A U2A', U2A'; complex (nu 99.2 1.8E-11 6.2E-16 111.6 7.0 132 376-514 15-153 (176)
145 3te6_A Regulatory protein SIR3 99.2 5E-10 1.7E-14 110.2 17.1 175 2-180 23-213 (318)
146 1w8a_A SLIT protein; signaling 99.2 1.1E-10 3.9E-15 107.8 11.4 125 433-560 11-137 (192)
147 1ds9_A Outer arm dynein; leuci 99.2 4.4E-13 1.5E-17 125.0 -5.5 110 425-539 43-154 (198)
148 2o6r_A Variable lymphocyte rec 99.2 1.7E-10 6E-15 105.1 11.6 127 409-538 9-137 (177)
149 1iqp_A RFCS; clamp loader, ext 99.1 1.8E-10 6E-15 116.7 12.0 187 1-213 27-214 (327)
150 2wfh_A SLIT homolog 2 protein 99.1 2.1E-10 7.1E-15 106.0 10.6 106 407-512 31-137 (193)
151 3sb4_A Hypothetical leucine ri 99.1 5E-10 1.7E-14 113.3 12.3 102 500-620 225-328 (329)
152 1jr3_A DNA polymerase III subu 99.1 1.7E-09 5.7E-14 111.7 15.9 195 1-212 18-222 (373)
153 2o6r_A Variable lymphocyte rec 99.0 1.5E-09 5.3E-14 98.8 12.3 126 432-560 9-135 (177)
154 2chq_A Replication factor C sm 99.0 1.3E-09 4.5E-14 109.8 12.4 181 1-211 19-204 (319)
155 1ds9_A Outer arm dynein; leuci 99.0 4.7E-11 1.6E-15 111.2 -0.7 130 427-560 15-151 (198)
156 3g39_A Variable lymphocyte rec 99.0 2.7E-09 9.1E-14 96.3 10.3 103 408-512 10-113 (170)
157 2r9u_A Variable lymphocyte rec 98.9 3E-09 1E-13 96.3 10.3 100 410-512 15-116 (174)
158 3pfi_A Holliday junction ATP-d 98.9 2.9E-08 1E-12 100.7 18.2 179 1-213 31-229 (338)
159 4fdw_A Leucine rich hypothetic 98.9 2.9E-08 9.9E-13 102.6 18.2 218 402-644 131-355 (401)
160 3bos_A Putative DNA replicatio 98.9 4.1E-09 1.4E-13 101.4 10.1 173 5-213 37-219 (242)
161 1sxj_D Activator 1 41 kDa subu 98.9 2E-08 6.7E-13 102.8 14.7 194 1-211 39-235 (353)
162 1jbk_A CLPB protein; beta barr 98.8 8.8E-09 3E-13 95.2 10.1 150 1-174 24-194 (195)
163 4fdw_A Leucine rich hypothetic 98.8 2.2E-08 7.4E-13 103.6 13.9 237 375-644 131-380 (401)
164 3pvs_A Replication-associated 98.8 2.4E-08 8.1E-13 104.2 14.3 180 1-211 28-215 (447)
165 1sxj_E Activator 1 40 kDa subu 98.8 9.3E-09 3.2E-13 105.2 10.5 193 1-212 16-238 (354)
166 3uk6_A RUVB-like 2; hexameric 98.8 4.3E-08 1.5E-12 100.8 15.1 202 1-212 46-304 (368)
167 3un9_A NLR family member X1; l 98.8 2.1E-09 7E-14 110.1 3.7 160 379-538 71-252 (372)
168 1sxj_A Activator 1 95 kDa subu 98.7 5.2E-08 1.8E-12 104.4 13.4 197 1-210 41-252 (516)
169 3g39_A Variable lymphocyte rec 98.7 3.3E-08 1.1E-12 89.0 9.4 101 432-536 11-113 (170)
170 3un9_A NLR family member X1; l 98.7 7.3E-10 2.5E-14 113.5 -1.9 155 406-560 71-250 (372)
171 3h4m_A Proteasome-activating n 98.7 1.7E-07 5.8E-12 92.5 15.3 188 1-212 19-232 (285)
172 2r9u_A Variable lymphocyte rec 98.7 3.8E-08 1.3E-12 89.0 9.4 100 433-536 15-116 (174)
173 3u61_B DNA polymerase accessor 98.7 9.6E-08 3.3E-12 96.2 13.5 177 1-208 28-213 (324)
174 1d2n_A N-ethylmaleimide-sensit 98.7 2.5E-07 8.7E-12 90.4 16.0 172 1-202 35-228 (272)
175 1sxj_C Activator 1 40 kDa subu 98.7 1.6E-07 5.5E-12 95.1 14.5 176 1-209 27-210 (340)
176 2z4s_A Chromosomal replication 98.7 2.7E-07 9.3E-12 96.4 16.5 166 26-211 130-306 (440)
177 3syl_A Protein CBBX; photosynt 98.7 3.1E-07 1E-11 91.8 16.0 178 1-199 33-235 (309)
178 2qz4_A Paraplegin; AAA+, SPG7, 98.7 7.4E-07 2.5E-11 86.7 18.2 190 1-212 8-223 (262)
179 1a5t_A Delta prime, HOLB; zinc 98.7 4E-07 1.4E-11 91.7 16.4 175 4-211 7-205 (334)
180 3n70_A Transport activator; si 98.6 4.9E-08 1.7E-12 85.2 7.6 114 1-145 3-116 (145)
181 1xwi_A SKD1 protein; VPS4B, AA 98.6 1.2E-06 4.1E-11 87.6 18.6 191 1-214 14-226 (322)
182 3eie_A Vacuolar protein sortin 98.6 6.6E-07 2.3E-11 89.7 16.8 188 1-214 20-231 (322)
183 2ifg_A High affinity nerve gro 98.6 6.8E-08 2.3E-12 98.4 9.2 88 403-491 27-116 (347)
184 2qp9_X Vacuolar protein sortin 98.6 8.4E-07 2.9E-11 90.0 16.9 189 1-213 53-263 (355)
185 3d8b_A Fidgetin-like protein 1 98.6 7.8E-07 2.7E-11 90.5 15.4 189 1-214 86-298 (357)
186 1l8q_A Chromosomal replication 98.5 1.2E-06 4E-11 88.2 15.8 176 7-209 22-206 (324)
187 2ra8_A Uncharacterized protein 98.5 5.7E-08 1.9E-12 98.5 5.4 14 376-389 135-148 (362)
188 2ra8_A Uncharacterized protein 98.5 1.2E-07 4.2E-12 96.0 7.0 155 403-560 135-318 (362)
189 2p65_A Hypothetical protein PF 98.5 2.2E-07 7.5E-12 85.1 8.0 43 1-49 24-66 (187)
190 3vfd_A Spastin; ATPase, microt 98.5 2.9E-06 9.9E-11 87.5 17.2 188 1-213 117-328 (389)
191 3b9p_A CG5977-PA, isoform A; A 98.5 3.3E-06 1.1E-10 83.7 16.9 187 1-212 23-234 (297)
192 2zan_A Vacuolar protein sortin 98.5 4.6E-06 1.6E-10 87.3 18.4 190 1-214 136-348 (444)
193 3co5_A Putative two-component 98.4 1.7E-07 5.7E-12 81.6 4.7 109 1-144 6-115 (143)
194 2ifg_A High affinity nerve gro 98.4 7.1E-07 2.4E-11 90.8 9.7 102 434-537 12-115 (347)
195 4gt6_A Cell surface protein; l 98.4 6.1E-06 2.1E-10 85.4 16.5 59 579-645 306-368 (394)
196 3e4g_A ATP synthase subunit S, 98.4 1.5E-07 5.1E-12 83.4 2.9 36 613-649 114-154 (176)
197 2gno_A DNA polymerase III, gam 98.3 3.2E-06 1.1E-10 83.3 12.6 149 3-178 1-152 (305)
198 1ojl_A Transcriptional regulat 98.3 3E-06 1E-10 83.8 12.0 197 1-211 4-228 (304)
199 3cf0_A Transitional endoplasmi 98.3 8.9E-06 3E-10 80.5 15.5 181 1-205 17-222 (301)
200 1lv7_A FTSH; alpha/beta domain 98.3 1E-05 3.5E-10 78.1 15.6 188 1-212 14-226 (257)
201 3hu3_A Transitional endoplasmi 98.3 4.4E-06 1.5E-10 88.0 13.5 188 1-212 206-416 (489)
202 4fcw_A Chaperone protein CLPB; 98.3 3.2E-06 1.1E-10 84.4 12.0 135 1-144 19-169 (311)
203 1qvr_A CLPB protein; coiled co 98.3 2.5E-06 8.5E-11 97.2 12.2 154 1-178 172-345 (854)
204 1in4_A RUVB, holliday junction 98.3 8.5E-06 2.9E-10 82.0 14.7 178 1-212 27-224 (334)
205 3pxg_A Negative regulator of g 98.3 2.2E-06 7.5E-11 90.4 10.6 148 1-180 182-340 (468)
206 2bjv_A PSP operon transcriptio 98.3 3.6E-06 1.2E-10 81.8 11.4 161 1-175 8-191 (265)
207 4b4t_J 26S protease regulatory 98.3 1.5E-05 5E-10 80.4 15.3 178 2-203 151-353 (405)
208 4fs7_A Uncharacterized protein 98.2 8.4E-06 2.9E-10 84.3 13.7 213 402-642 157-374 (394)
209 1ofh_A ATP-dependent HSL prote 98.2 7.7E-06 2.6E-10 81.6 12.0 154 1-176 17-213 (310)
210 3ec2_A DNA replication protein 98.2 3.9E-06 1.3E-10 76.2 8.9 122 4-145 19-143 (180)
211 2c9o_A RUVB-like 1; hexameric 98.2 3.1E-05 1.1E-09 81.4 16.3 99 107-211 297-410 (456)
212 4fs7_A Uncharacterized protein 98.2 2.9E-05 9.9E-10 80.3 15.8 218 375-623 157-376 (394)
213 4b4t_L 26S protease subunit RP 98.2 3E-05 1E-09 79.5 15.5 178 2-203 184-386 (437)
214 2ce7_A Cell division protein F 98.1 4.6E-05 1.6E-09 79.5 16.3 180 1-204 18-221 (476)
215 4gt6_A Cell surface protein; l 98.1 8.6E-05 2.9E-09 76.7 18.4 263 375-672 58-366 (394)
216 4b4t_H 26S protease regulatory 98.1 3.9E-05 1.3E-09 78.4 14.8 178 2-203 212-414 (467)
217 1r6b_X CLPA protein; AAA+, N-t 98.1 5.4E-05 1.9E-09 85.4 17.6 154 1-178 188-362 (758)
218 4b4t_K 26S protease regulatory 98.1 3.5E-05 1.2E-09 78.9 14.1 178 2-203 175-378 (428)
219 1io0_A Tropomodulin; LRR prote 98.1 1.9E-06 6.3E-11 78.6 4.1 90 372-461 28-128 (185)
220 4b4t_M 26S protease regulatory 98.1 2.3E-05 8E-10 80.3 12.5 185 2-210 184-394 (434)
221 4b4t_I 26S protease regulatory 98.1 3.4E-05 1.1E-09 78.0 13.2 178 2-203 185-387 (437)
222 3pxi_A Negative regulator of g 98.1 1.8E-05 6E-10 89.2 12.4 148 1-180 182-340 (758)
223 1io0_A Tropomodulin; LRR prote 98.0 2E-06 6.7E-11 78.5 3.0 118 395-512 24-162 (185)
224 3e4g_A ATP synthase subunit S, 98.0 3.7E-06 1.3E-10 74.5 4.5 37 479-515 62-99 (176)
225 3pxi_A Negative regulator of g 98.0 1.3E-05 4.5E-10 90.2 9.8 157 1-178 493-675 (758)
226 2r62_A Cell division protease 97.9 2.7E-06 9.2E-11 82.9 2.3 181 1-205 13-219 (268)
227 2w58_A DNAI, primosome compone 97.9 8.9E-06 3E-10 75.4 4.9 56 6-65 36-91 (202)
228 2r44_A Uncharacterized protein 97.9 0.00012 4E-09 73.6 13.5 152 1-180 29-200 (331)
229 3cf2_A TER ATPase, transitiona 97.9 6E-05 2.1E-09 83.3 11.8 185 2-210 207-414 (806)
230 3t15_A Ribulose bisphosphate c 97.8 0.00014 4.9E-09 71.3 13.2 26 23-48 33-58 (293)
231 1qvr_A CLPB protein; coiled co 97.8 8.6E-05 3E-09 84.6 13.1 134 1-144 560-710 (854)
232 3rw6_A Nuclear RNA export fact 97.8 5E-06 1.7E-10 79.6 2.3 66 404-471 167-237 (267)
233 2kjq_A DNAA-related protein; s 97.8 1.4E-05 4.7E-10 69.6 4.5 86 27-144 37-124 (149)
234 1r6b_X CLPA protein; AAA+, N-t 97.7 6.3E-05 2.1E-09 84.9 9.3 133 1-144 460-607 (758)
235 2dhr_A FTSH; AAA+ protein, hex 97.7 0.0005 1.7E-08 72.1 14.6 176 1-204 33-236 (499)
236 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 0.00053 1.8E-08 72.0 13.2 41 1-49 24-64 (500)
237 3rw6_A Nuclear RNA export fact 97.5 2.3E-05 7.7E-10 75.1 1.6 61 452-513 168-232 (267)
238 1um8_A ATP-dependent CLP prote 97.5 0.0011 3.9E-08 67.7 14.4 48 1-48 23-94 (376)
239 4h09_A Hypothetical leucine ri 97.5 0.0031 1.1E-07 64.4 17.6 56 579-641 281-340 (379)
240 3m6a_A ATP-dependent protease 97.5 0.00013 4.5E-09 78.2 7.1 162 2-178 84-266 (543)
241 1jr3_D DNA polymerase III, del 97.5 0.0024 8.2E-08 64.3 16.1 159 26-211 18-185 (343)
242 1ixz_A ATP-dependent metallopr 97.5 0.0012 4E-08 63.4 13.1 180 1-204 18-221 (254)
243 1iy2_A ATP-dependent metallopr 97.4 0.00091 3.1E-08 65.1 12.0 185 1-209 42-251 (278)
244 4h09_A Hypothetical leucine ri 97.4 0.0023 7.7E-08 65.5 15.5 84 521-622 259-342 (379)
245 2qgz_A Helicase loader, putati 97.4 0.00013 4.4E-09 72.1 5.3 55 5-64 134-189 (308)
246 1g8p_A Magnesium-chelatase 38 97.3 0.00079 2.7E-08 68.1 10.3 43 1-49 26-68 (350)
247 1ypw_A Transitional endoplasmi 97.3 0.00078 2.7E-08 75.7 11.1 180 1-204 206-407 (806)
248 2b8t_A Thymidine kinase; deoxy 97.3 0.00024 8.2E-09 65.9 5.4 111 27-145 13-126 (223)
249 1g5t_A COB(I)alamin adenosyltr 97.2 0.00025 8.5E-09 63.7 4.6 119 26-146 28-164 (196)
250 2x8a_A Nuclear valosin-contain 97.2 0.0036 1.2E-07 60.5 13.2 131 28-179 46-192 (274)
251 2cvh_A DNA repair and recombin 97.1 0.0023 8E-08 59.6 10.4 84 27-116 21-116 (220)
252 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00052 1.8E-08 66.7 5.5 68 27-116 124-193 (331)
253 3hr8_A Protein RECA; alpha and 97.0 0.0023 7.9E-08 63.9 9.5 84 26-116 61-150 (356)
254 3io5_A Recombination and repai 97.0 0.0041 1.4E-07 60.1 10.6 82 28-116 30-122 (333)
255 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0024 8.3E-08 60.1 9.1 114 27-145 24-168 (235)
256 1ye8_A Protein THEP1, hypothet 96.9 0.0077 2.6E-07 53.8 11.5 69 102-172 96-170 (178)
257 1xp8_A RECA protein, recombina 96.9 0.0033 1.1E-07 63.2 9.7 83 27-116 75-163 (366)
258 2zr9_A Protein RECA, recombina 96.8 0.0034 1.2E-07 62.8 9.5 84 26-116 61-150 (349)
259 3cf2_A TER ATPase, transitiona 96.8 0.0021 7.3E-08 71.0 7.8 176 3-202 481-681 (806)
260 1u94_A RECA protein, recombina 96.7 0.0032 1.1E-07 63.1 7.9 84 26-116 63-152 (356)
261 1cr0_A DNA primase/helicase; R 96.4 0.012 4.1E-07 57.7 10.1 37 27-65 36-73 (296)
262 1rz3_A Hypothetical protein rb 96.4 0.0063 2.1E-07 55.8 7.3 43 3-48 2-44 (201)
263 4a1f_A DNAB helicase, replicat 96.4 0.015 5.2E-07 57.4 10.4 50 27-80 47-96 (338)
264 1v5w_A DMC1, meiotic recombina 96.4 0.021 7.3E-07 57.1 11.7 55 26-81 122-180 (343)
265 2orw_A Thymidine kinase; TMTK, 96.4 0.00057 1.9E-08 61.7 0.0 107 27-144 4-112 (184)
266 2z43_A DNA repair and recombin 96.3 0.0076 2.6E-07 59.9 8.2 54 27-81 108-165 (324)
267 1n0w_A DNA repair protein RAD5 96.3 0.0094 3.2E-07 56.4 8.3 89 27-116 25-130 (243)
268 2px0_A Flagellar biosynthesis 96.2 0.012 4.3E-07 57.3 8.5 87 25-114 104-191 (296)
269 1odf_A YGR205W, hypothetical 3 96.1 0.034 1.2E-06 53.9 11.3 82 23-104 28-117 (290)
270 3hws_A ATP-dependent CLP prote 96.1 0.0041 1.4E-07 63.1 5.0 48 1-48 17-73 (363)
271 3tqc_A Pantothenate kinase; bi 96.1 0.014 4.7E-07 57.3 8.5 97 3-105 71-171 (321)
272 2i1q_A DNA repair and recombin 96.1 0.012 4.1E-07 58.5 8.0 56 26-82 98-167 (322)
273 3dm5_A SRP54, signal recogniti 96.0 0.06 2E-06 55.2 13.0 41 24-66 98-138 (443)
274 1vma_A Cell division protein F 96.0 0.025 8.6E-07 55.2 9.8 91 24-116 102-197 (306)
275 3bh0_A DNAB-like replicative h 96.0 0.11 3.7E-06 51.2 14.5 50 27-80 69-118 (315)
276 1ny5_A Transcriptional regulat 96.0 0.033 1.1E-06 56.7 10.8 129 2-144 140-281 (387)
277 1nlf_A Regulatory protein REPA 95.9 0.026 8.8E-07 54.7 9.5 22 27-48 31-52 (279)
278 1ypw_A Transitional endoplasmi 95.7 0.00077 2.6E-08 75.8 -2.7 159 2-180 480-663 (806)
279 3kl4_A SRP54, signal recogniti 95.7 0.049 1.7E-06 55.7 10.8 91 24-116 95-190 (433)
280 3e70_C DPA, signal recognition 95.7 0.039 1.3E-06 54.5 9.8 40 24-65 127-166 (328)
281 3e1s_A Exodeoxyribonuclease V, 95.7 0.032 1.1E-06 59.9 9.7 103 27-142 205-313 (574)
282 1qhx_A CPT, protein (chloramph 95.7 0.0051 1.7E-07 55.1 3.0 22 27-48 4-25 (178)
283 3lda_A DNA repair protein RAD5 95.6 0.031 1.1E-06 56.8 9.0 55 27-82 179-237 (400)
284 2r6a_A DNAB helicase, replicat 95.6 0.053 1.8E-06 56.6 11.0 48 27-78 204-252 (454)
285 3upu_A ATP-dependent DNA helic 95.6 0.018 6.1E-07 60.4 7.4 102 28-142 47-162 (459)
286 3c8u_A Fructokinase; YP_612366 95.6 0.0097 3.3E-07 54.9 4.6 40 6-49 6-45 (208)
287 1q57_A DNA primase/helicase; d 95.6 0.044 1.5E-06 58.2 10.3 51 27-81 243-294 (503)
288 2q6t_A DNAB replication FORK h 95.6 0.051 1.7E-06 56.5 10.5 51 27-81 201-252 (444)
289 1ly1_A Polynucleotide kinase; 95.6 0.0068 2.3E-07 54.4 3.4 23 26-48 2-24 (181)
290 3uie_A Adenylyl-sulfate kinase 95.5 0.014 4.7E-07 53.4 5.5 25 25-49 24-48 (200)
291 1gvn_B Zeta; postsegregational 95.5 0.014 4.7E-07 56.8 5.7 26 23-48 30-55 (287)
292 1pzn_A RAD51, DNA repair and r 95.5 0.038 1.3E-06 55.3 8.8 43 26-68 131-177 (349)
293 1j8m_F SRP54, signal recogniti 95.4 0.15 5E-06 49.7 12.5 90 26-117 98-192 (297)
294 3dzd_A Transcriptional regulat 95.4 0.025 8.6E-07 57.1 7.3 162 1-177 131-315 (368)
295 1ls1_A Signal recognition part 95.3 0.052 1.8E-06 52.8 9.0 88 25-114 97-189 (295)
296 3ice_A Transcription terminati 95.3 0.018 6.1E-07 57.2 5.6 21 28-48 176-196 (422)
297 1pgv_A TMD-1, tropomodulin TMD 95.3 0.02 6.9E-07 51.5 5.4 94 371-464 32-136 (197)
298 3kb2_A SPBC2 prophage-derived 95.3 0.0078 2.7E-07 53.5 2.8 21 28-48 3-23 (173)
299 1zp6_A Hypothetical protein AT 95.3 0.01 3.5E-07 53.8 3.5 23 26-48 9-31 (191)
300 3cmu_A Protein RECA, recombina 95.3 0.02 6.8E-07 69.2 6.8 84 25-115 1426-1515(2050)
301 3fwy_A Light-independent proto 95.2 0.021 7.3E-07 56.0 6.0 42 24-67 46-87 (314)
302 1nks_A Adenylate kinase; therm 95.2 0.017 5.8E-07 52.4 4.9 22 27-48 2-23 (194)
303 1zu4_A FTSY; GTPase, signal re 95.2 0.053 1.8E-06 53.4 8.6 41 24-66 103-143 (320)
304 2ga8_A Hypothetical 39.9 kDa p 95.2 0.018 6.3E-07 56.8 5.2 46 2-49 2-47 (359)
305 1ex7_A Guanylate kinase; subst 95.2 0.0072 2.5E-07 54.2 2.1 22 27-48 2-23 (186)
306 1kgd_A CASK, peripheral plasma 95.2 0.01 3.4E-07 53.3 3.1 22 27-48 6-27 (180)
307 2p5t_B PEZT; postsegregational 95.1 0.018 6.3E-07 54.8 5.1 26 23-48 29-54 (253)
308 3umf_A Adenylate kinase; rossm 95.1 0.013 4.5E-07 54.0 3.7 26 23-48 26-51 (217)
309 2rhm_A Putative kinase; P-loop 95.1 0.012 4E-07 53.4 3.4 24 25-48 4-27 (193)
310 1tue_A Replication protein E1; 95.1 0.015 5E-07 52.4 3.8 36 8-48 45-80 (212)
311 2yvu_A Probable adenylyl-sulfa 95.1 0.026 8.9E-07 50.8 5.6 25 24-48 11-35 (186)
312 3trf_A Shikimate kinase, SK; a 95.1 0.01 3.5E-07 53.5 2.9 23 26-48 5-27 (185)
313 2xxa_A Signal recognition part 95.0 0.12 4.1E-06 53.2 11.1 42 24-67 98-140 (433)
314 1sky_E F1-ATPase, F1-ATP synth 95.0 0.052 1.8E-06 55.8 8.2 37 28-66 153-190 (473)
315 3vaa_A Shikimate kinase, SK; s 95.0 0.01 3.5E-07 54.2 2.8 22 27-48 26-47 (199)
316 3lw7_A Adenylate kinase relate 95.0 0.011 3.9E-07 52.6 3.0 20 27-46 2-21 (179)
317 3bgw_A DNAB-like replicative h 95.0 0.23 7.9E-06 51.4 13.1 50 27-80 198-247 (444)
318 2plr_A DTMP kinase, probable t 95.0 0.03 1E-06 51.5 5.9 23 27-49 5-27 (213)
319 1kag_A SKI, shikimate kinase I 94.9 0.0098 3.4E-07 52.9 2.3 22 27-48 5-26 (173)
320 1knq_A Gluconate kinase; ALFA/ 94.9 0.018 6.1E-07 51.3 4.0 23 26-48 8-30 (175)
321 3tau_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 53.9 3.1 23 26-48 8-30 (208)
322 3t61_A Gluconokinase; PSI-biol 94.9 0.011 3.7E-07 54.2 2.5 23 26-48 18-40 (202)
323 2j37_W Signal recognition part 94.8 0.29 9.9E-06 51.2 13.4 41 24-66 99-139 (504)
324 1pgv_A TMD-1, tropomodulin TMD 94.8 0.015 5E-07 52.5 3.1 93 395-487 29-135 (197)
325 3a00_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 53.3 2.4 22 27-48 2-23 (186)
326 3jvv_A Twitching mobility prot 94.8 0.021 7.2E-07 57.2 4.5 111 27-149 124-235 (356)
327 1g41_A Heat shock protein HSLU 94.7 0.022 7.4E-07 58.5 4.5 48 1-48 17-72 (444)
328 2j9r_A Thymidine kinase; TK1, 94.7 0.035 1.2E-06 50.5 5.4 109 26-145 28-138 (214)
329 3tlx_A Adenylate kinase 2; str 94.7 0.025 8.7E-07 53.4 4.7 25 24-48 27-51 (243)
330 2z0h_A DTMP kinase, thymidylat 94.7 0.045 1.5E-06 49.7 6.3 21 28-48 2-22 (197)
331 1tev_A UMP-CMP kinase; ploop, 94.7 0.016 5.5E-07 52.6 3.3 23 26-48 3-25 (196)
332 2bdt_A BH3686; alpha-beta prot 94.7 0.018 6E-07 52.1 3.4 22 27-48 3-24 (189)
333 4gp7_A Metallophosphoesterase; 94.7 0.017 5.7E-07 51.3 3.2 22 26-47 9-30 (171)
334 4eun_A Thermoresistant glucoki 94.7 0.016 5.4E-07 53.0 3.1 23 26-48 29-51 (200)
335 3k1j_A LON protease, ATP-depen 94.6 0.038 1.3E-06 60.0 6.5 41 1-49 43-83 (604)
336 2qor_A Guanylate kinase; phosp 94.6 0.014 4.6E-07 53.7 2.5 23 26-48 12-34 (204)
337 2ze6_A Isopentenyl transferase 94.6 0.017 5.8E-07 55.0 3.2 22 27-48 2-23 (253)
338 1kht_A Adenylate kinase; phosp 94.6 0.015 5.3E-07 52.5 2.8 22 27-48 4-25 (192)
339 1ukz_A Uridylate kinase; trans 94.6 0.02 7E-07 52.4 3.7 25 24-48 13-37 (203)
340 2pbr_A DTMP kinase, thymidylat 94.6 0.054 1.8E-06 49.0 6.5 21 28-48 2-22 (195)
341 3iij_A Coilin-interacting nucl 94.6 0.014 4.7E-07 52.3 2.4 23 26-48 11-33 (180)
342 1xx6_A Thymidine kinase; NESG, 94.5 0.018 6.3E-07 51.8 3.0 108 27-145 9-118 (191)
343 3tr0_A Guanylate kinase, GMP k 94.5 0.019 6.4E-07 52.7 3.1 22 27-48 8-29 (205)
344 3llm_A ATP-dependent RNA helic 94.5 0.18 6.3E-06 47.1 10.1 22 27-48 77-98 (235)
345 3cmu_A Protein RECA, recombina 94.5 0.063 2.1E-06 65.1 8.1 85 26-117 383-473 (2050)
346 2cdn_A Adenylate kinase; phosp 94.5 0.021 7.3E-07 52.2 3.4 25 24-48 18-42 (201)
347 1nn5_A Similar to deoxythymidy 94.4 0.031 1E-06 51.6 4.5 23 26-48 9-31 (215)
348 3ney_A 55 kDa erythrocyte memb 94.4 0.019 6.6E-07 51.8 3.0 24 25-48 18-41 (197)
349 2r8r_A Sensor protein; KDPD, P 94.4 0.064 2.2E-06 49.2 6.4 40 26-67 6-45 (228)
350 1y63_A LMAJ004144AAA protein; 94.4 0.02 6.9E-07 51.5 3.1 23 26-48 10-32 (184)
351 2yhs_A FTSY, cell division pro 94.4 0.12 4E-06 53.6 9.0 25 24-48 291-315 (503)
352 2c95_A Adenylate kinase 1; tra 94.4 0.019 6.6E-07 52.1 2.9 23 26-48 9-31 (196)
353 1uf9_A TT1252 protein; P-loop, 94.4 0.022 7.5E-07 52.1 3.4 25 24-48 6-30 (203)
354 1via_A Shikimate kinase; struc 94.4 0.019 6.3E-07 51.2 2.7 21 28-48 6-26 (175)
355 4akg_A Glutathione S-transfera 94.4 0.14 5E-06 64.2 11.3 138 27-178 1268-1431(2695)
356 1fx0_B ATP synthase beta chain 94.4 0.11 3.9E-06 53.4 8.7 50 28-79 167-218 (498)
357 3cm0_A Adenylate kinase; ATP-b 94.3 0.023 7.9E-07 51.1 3.3 22 27-48 5-26 (186)
358 2dr3_A UPF0273 protein PH0284; 94.3 0.036 1.2E-06 52.5 4.8 38 27-66 24-61 (247)
359 1qf9_A UMP/CMP kinase, protein 94.3 0.026 9E-07 51.0 3.7 24 25-48 5-28 (194)
360 4edh_A DTMP kinase, thymidylat 94.3 0.11 3.8E-06 47.7 7.9 22 27-48 7-28 (213)
361 3asz_A Uridine kinase; cytidin 94.3 0.024 8.3E-07 52.2 3.4 23 26-48 6-28 (211)
362 1lvg_A Guanylate kinase, GMP k 94.3 0.017 6E-07 52.6 2.4 22 27-48 5-26 (198)
363 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.024 8.2E-07 54.3 3.4 23 26-48 4-26 (260)
364 1htw_A HI0065; nucleotide-bind 94.2 0.027 9.2E-07 49.0 3.4 23 27-49 34-56 (158)
365 2ffh_A Protein (FFH); SRP54, s 94.2 0.22 7.5E-06 50.9 10.6 39 25-65 97-135 (425)
366 2j41_A Guanylate kinase; GMP, 94.2 0.024 8.1E-07 52.0 3.2 22 27-48 7-28 (207)
367 1zuh_A Shikimate kinase; alpha 94.2 0.023 7.9E-07 50.2 3.0 22 27-48 8-29 (168)
368 2bbw_A Adenylate kinase 4, AK4 94.2 0.023 7.7E-07 54.0 3.1 23 26-48 27-49 (246)
369 2hf9_A Probable hydrogenase ni 94.2 0.039 1.3E-06 51.4 4.7 25 25-49 37-61 (226)
370 2bwj_A Adenylate kinase 5; pho 94.2 0.02 7E-07 52.1 2.7 22 27-48 13-34 (199)
371 1uj2_A Uridine-cytidine kinase 94.2 0.025 8.6E-07 53.8 3.4 25 24-48 20-44 (252)
372 2iyv_A Shikimate kinase, SK; t 94.2 0.017 5.7E-07 52.0 2.0 21 28-48 4-24 (184)
373 4a74_A DNA repair and recombin 94.2 0.065 2.2E-06 50.0 6.2 42 26-67 25-70 (231)
374 2qt1_A Nicotinamide riboside k 94.2 0.028 9.6E-07 51.6 3.6 25 24-48 19-43 (207)
375 2vli_A Antibiotic resistance p 94.2 0.017 5.7E-07 51.9 1.9 23 26-48 5-27 (183)
376 2ged_A SR-beta, signal recogni 94.1 0.036 1.2E-06 50.1 4.2 26 24-49 46-71 (193)
377 1jjv_A Dephospho-COA kinase; P 94.1 0.028 9.5E-07 51.6 3.4 22 27-48 3-24 (206)
378 1e6c_A Shikimate kinase; phosp 94.1 0.019 6.6E-07 50.9 2.2 21 28-48 4-24 (173)
379 1xjc_A MOBB protein homolog; s 94.1 0.052 1.8E-06 47.6 4.9 23 26-48 4-26 (169)
380 3b5x_A Lipid A export ATP-bind 94.1 0.23 7.8E-06 53.6 11.0 22 27-48 370-391 (582)
381 2fz4_A DNA repair protein RAD2 94.1 0.19 6.4E-06 47.1 9.1 107 4-130 95-217 (237)
382 1znw_A Guanylate kinase, GMP k 94.0 0.026 8.8E-07 51.9 3.0 22 27-48 21-42 (207)
383 1tf7_A KAIC; homohexamer, hexa 94.0 0.055 1.9E-06 57.7 5.9 83 27-114 282-380 (525)
384 2jaq_A Deoxyguanosine kinase; 94.0 0.026 8.8E-07 51.7 3.0 21 28-48 2-22 (205)
385 3cmw_A Protein RECA, recombina 94.0 0.079 2.7E-06 63.3 7.5 85 26-117 383-473 (1706)
386 1rj9_A FTSY, signal recognitio 93.9 0.05 1.7E-06 53.1 5.0 25 25-49 101-125 (304)
387 3end_A Light-independent proto 93.9 0.071 2.4E-06 52.4 6.2 45 24-70 39-83 (307)
388 2if2_A Dephospho-COA kinase; a 93.9 0.027 9.2E-07 51.6 2.9 21 28-48 3-23 (204)
389 1cke_A CK, MSSA, protein (cyti 93.9 0.028 9.5E-07 52.5 3.0 22 27-48 6-27 (227)
390 2ehv_A Hypothetical protein PH 93.9 0.046 1.6E-06 51.8 4.6 38 27-65 31-68 (251)
391 1aky_A Adenylate kinase; ATP:A 93.9 0.028 9.7E-07 52.2 3.0 22 27-48 5-26 (220)
392 1s96_A Guanylate kinase, GMP k 93.9 0.029 9.8E-07 52.0 2.9 22 27-48 17-38 (219)
393 2wwf_A Thymidilate kinase, put 93.8 0.05 1.7E-06 50.1 4.6 23 26-48 10-32 (212)
394 2pt5_A Shikimate kinase, SK; a 93.8 0.03 1E-06 49.3 3.0 21 28-48 2-22 (168)
395 2jeo_A Uridine-cytidine kinase 93.8 0.037 1.3E-06 52.4 3.7 23 26-48 25-47 (245)
396 1z6g_A Guanylate kinase; struc 93.7 0.025 8.7E-07 52.4 2.4 22 27-48 24-45 (218)
397 3p32_A Probable GTPase RV1496/ 93.7 0.12 4E-06 52.0 7.5 40 24-65 77-116 (355)
398 1zd8_A GTP:AMP phosphotransfer 93.7 0.028 9.7E-07 52.5 2.7 23 26-48 7-29 (227)
399 2pez_A Bifunctional 3'-phospho 93.7 0.037 1.3E-06 49.4 3.4 23 26-48 5-27 (179)
400 3hjn_A DTMP kinase, thymidylat 93.7 0.13 4.3E-06 46.7 6.9 50 28-79 2-51 (197)
401 4tmk_A Protein (thymidylate ki 93.7 0.25 8.5E-06 45.3 8.9 51 27-79 4-55 (213)
402 3aez_A Pantothenate kinase; tr 93.6 0.039 1.3E-06 54.2 3.6 25 24-48 88-112 (312)
403 3fb4_A Adenylate kinase; psych 93.6 0.034 1.1E-06 51.5 3.0 21 28-48 2-22 (216)
404 2ck3_D ATP synthase subunit be 93.6 0.26 9E-06 50.5 9.7 50 28-79 155-206 (482)
405 1zak_A Adenylate kinase; ATP:A 93.6 0.027 9.4E-07 52.4 2.4 23 26-48 5-27 (222)
406 2f6r_A COA synthase, bifunctio 93.6 0.041 1.4E-06 53.3 3.7 25 24-48 73-97 (281)
407 2wsm_A Hydrogenase expression/ 93.6 0.052 1.8E-06 50.3 4.3 26 24-49 28-53 (221)
408 3cmw_A Protein RECA, recombina 93.5 0.099 3.4E-06 62.5 7.4 82 26-114 1431-1518(1706)
409 3sr0_A Adenylate kinase; phosp 93.5 0.035 1.2E-06 50.8 2.8 21 28-48 2-22 (206)
410 3dl0_A Adenylate kinase; phosp 93.5 0.036 1.2E-06 51.3 3.0 21 28-48 2-22 (216)
411 3b9q_A Chloroplast SRP recepto 93.4 0.071 2.4E-06 52.0 5.1 25 25-49 99-123 (302)
412 2v54_A DTMP kinase, thymidylat 93.4 0.037 1.3E-06 50.6 3.0 22 27-48 5-26 (204)
413 4eaq_A DTMP kinase, thymidylat 93.4 0.081 2.8E-06 49.3 5.2 25 25-49 25-49 (229)
414 3b85_A Phosphate starvation-in 93.3 0.07 2.4E-06 48.8 4.6 22 28-49 24-45 (208)
415 1sq5_A Pantothenate kinase; P- 93.3 0.092 3.1E-06 51.5 5.7 25 24-48 78-102 (308)
416 1m7g_A Adenylylsulfate kinase; 93.3 0.05 1.7E-06 50.1 3.6 24 26-49 25-48 (211)
417 1u0j_A DNA replication protein 93.3 0.077 2.6E-06 50.2 4.8 23 26-48 104-126 (267)
418 2grj_A Dephospho-COA kinase; T 93.2 0.048 1.6E-06 49.2 3.3 25 24-48 10-34 (192)
419 4e22_A Cytidylate kinase; P-lo 93.2 0.044 1.5E-06 52.1 3.1 22 27-48 28-49 (252)
420 1vht_A Dephospho-COA kinase; s 93.2 0.05 1.7E-06 50.4 3.5 23 26-48 4-26 (218)
421 3foz_A TRNA delta(2)-isopenten 93.2 0.054 1.8E-06 52.3 3.6 25 24-48 8-32 (316)
422 2qmh_A HPR kinase/phosphorylas 93.2 0.05 1.7E-06 48.7 3.2 22 27-48 35-56 (205)
423 3exa_A TRNA delta(2)-isopenten 93.2 0.05 1.7E-06 52.7 3.4 23 26-48 3-25 (322)
424 3crm_A TRNA delta(2)-isopenten 93.1 0.051 1.7E-06 53.1 3.5 23 26-48 5-27 (323)
425 3tif_A Uncharacterized ABC tra 93.1 0.047 1.6E-06 51.2 3.1 22 27-48 32-53 (235)
426 1cp2_A CP2, nitrogenase iron p 93.1 0.1 3.6E-06 50.0 5.7 41 27-69 2-42 (269)
427 2i3b_A HCR-ntpase, human cance 93.1 0.041 1.4E-06 49.5 2.5 23 28-50 3-25 (189)
428 2onk_A Molybdate/tungstate ABC 93.1 0.047 1.6E-06 51.3 3.1 22 27-48 25-46 (240)
429 3r20_A Cytidylate kinase; stru 93.1 0.045 1.5E-06 50.9 2.8 23 26-48 9-31 (233)
430 3f9v_A Minichromosome maintena 93.0 0.034 1.2E-06 60.0 2.2 22 28-49 329-350 (595)
431 3lnc_A Guanylate kinase, GMP k 93.0 0.032 1.1E-06 52.2 1.8 22 27-48 28-50 (231)
432 2pcj_A ABC transporter, lipopr 93.0 0.048 1.7E-06 50.7 2.9 22 27-48 31-52 (224)
433 3a8t_A Adenylate isopentenyltr 92.9 0.061 2.1E-06 52.7 3.7 23 26-48 40-62 (339)
434 2eyu_A Twitching motility prot 92.9 0.089 3E-06 50.1 4.8 110 27-147 26-135 (261)
435 1ltq_A Polynucleotide kinase; 92.9 0.055 1.9E-06 53.0 3.4 23 26-48 2-24 (301)
436 3be4_A Adenylate kinase; malar 92.9 0.044 1.5E-06 50.7 2.5 22 27-48 6-27 (217)
437 3iqw_A Tail-anchored protein t 92.8 0.12 4E-06 51.2 5.7 43 25-69 15-57 (334)
438 1yrb_A ATP(GTP)binding protein 92.8 0.14 4.7E-06 48.9 6.1 39 24-65 12-50 (262)
439 1gtv_A TMK, thymidylate kinase 92.8 0.027 9.2E-07 52.0 1.0 21 28-48 2-22 (214)
440 2og2_A Putative signal recogni 92.8 0.098 3.3E-06 52.2 5.1 25 25-49 156-180 (359)
441 2zts_A Putative uncharacterize 92.8 0.091 3.1E-06 49.7 4.8 39 27-66 31-69 (251)
442 3zq6_A Putative arsenical pump 92.8 0.17 5.9E-06 50.0 6.8 45 26-72 14-58 (324)
443 3d3q_A TRNA delta(2)-isopenten 92.8 0.058 2E-06 53.1 3.3 22 27-48 8-29 (340)
444 2v3c_C SRP54, signal recogniti 92.7 0.085 2.9E-06 54.3 4.6 41 24-66 97-137 (432)
445 1ak2_A Adenylate kinase isoenz 92.7 0.057 1.9E-06 50.6 3.1 23 26-48 16-38 (233)
446 2xb4_A Adenylate kinase; ATP-b 92.7 0.056 1.9E-06 50.3 3.0 21 28-48 2-22 (223)
447 3io3_A DEHA2D07832P; chaperone 92.7 0.12 4.2E-06 51.4 5.6 43 24-68 16-60 (348)
448 2xau_A PRE-mRNA-splicing facto 92.7 0.47 1.6E-05 52.9 10.9 35 6-48 97-131 (773)
449 1w36_D RECD, exodeoxyribonucle 92.7 0.69 2.4E-05 50.0 12.0 22 27-48 165-186 (608)
450 3zvl_A Bifunctional polynucleo 92.7 0.059 2E-06 55.4 3.4 25 24-48 256-280 (416)
451 1e4v_A Adenylate kinase; trans 92.7 0.055 1.9E-06 49.9 2.9 21 28-48 2-22 (214)
452 2afh_E Nitrogenase iron protei 92.7 0.13 4.3E-06 50.0 5.7 41 27-69 3-43 (289)
453 1np6_A Molybdopterin-guanine d 92.6 0.14 4.7E-06 45.3 5.3 24 26-49 6-29 (174)
454 3gfo_A Cobalt import ATP-bindi 92.6 0.059 2E-06 51.7 3.1 22 27-48 35-56 (275)
455 2f1r_A Molybdopterin-guanine d 92.6 0.039 1.4E-06 48.7 1.7 23 27-49 3-25 (171)
456 2cbz_A Multidrug resistance-as 92.6 0.061 2.1E-06 50.5 3.1 60 88-147 127-191 (237)
457 3l0o_A Transcription terminati 92.6 0.052 1.8E-06 53.9 2.6 21 28-48 177-197 (427)
458 3vkw_A Replicase large subunit 92.6 0.24 8.1E-06 50.6 7.6 104 23-142 158-267 (446)
459 3nwj_A ATSK2; P loop, shikimat 92.6 0.046 1.6E-06 51.6 2.2 22 27-48 49-70 (250)
460 3rfe_A Platelet glycoprotein I 92.6 0.18 6.1E-06 42.1 5.6 52 411-464 12-65 (130)
461 1b0u_A Histidine permease; ABC 92.5 0.061 2.1E-06 51.3 3.1 22 27-48 33-54 (262)
462 3ake_A Cytidylate kinase; CMP 92.5 0.061 2.1E-06 49.2 3.0 21 28-48 4-24 (208)
463 2wji_A Ferrous iron transport 92.5 0.078 2.7E-06 46.4 3.6 23 27-49 4-26 (165)
464 1ji0_A ABC transporter; ATP bi 92.5 0.065 2.2E-06 50.4 3.1 22 27-48 33-54 (240)
465 1a7j_A Phosphoribulokinase; tr 92.4 0.037 1.3E-06 53.8 1.4 42 25-68 4-45 (290)
466 4g1u_C Hemin import ATP-bindin 92.4 0.064 2.2E-06 51.3 3.1 22 27-48 38-59 (266)
467 3j16_B RLI1P; ribosome recycli 92.4 0.59 2E-05 50.3 10.9 124 27-150 379-533 (608)
468 1sgw_A Putative ABC transporte 92.4 0.055 1.9E-06 49.7 2.5 22 27-48 36-57 (214)
469 1g6h_A High-affinity branched- 92.4 0.065 2.2E-06 51.0 3.1 22 27-48 34-55 (257)
470 2zej_A Dardarin, leucine-rich 92.4 0.064 2.2E-06 48.0 2.9 22 28-49 4-25 (184)
471 2olj_A Amino acid ABC transpor 92.4 0.066 2.3E-06 51.0 3.1 22 27-48 51-72 (263)
472 3ug7_A Arsenical pump-driving 92.3 0.17 5.9E-06 50.5 6.2 42 24-67 24-65 (349)
473 1mv5_A LMRA, multidrug resista 92.3 0.074 2.5E-06 50.1 3.3 22 27-48 29-50 (243)
474 3bfv_A CAPA1, CAPB2, membrane 92.3 0.24 8.3E-06 47.4 7.0 58 6-67 64-122 (271)
475 3lv8_A DTMP kinase, thymidylat 92.3 0.2 6.8E-06 46.7 6.2 36 26-63 27-63 (236)
476 3qf4_A ABC transporter, ATP-bi 92.3 0.52 1.8E-05 50.8 10.3 22 27-48 370-391 (587)
477 3ld9_A DTMP kinase, thymidylat 92.3 0.18 6.3E-06 46.4 5.8 26 24-49 19-44 (223)
478 2ff7_A Alpha-hemolysin translo 92.2 0.072 2.5E-06 50.3 3.1 22 27-48 36-57 (247)
479 2pze_A Cystic fibrosis transme 92.2 0.072 2.5E-06 49.7 3.1 61 88-148 130-193 (229)
480 2d2e_A SUFC protein; ABC-ATPas 92.2 0.074 2.5E-06 50.4 3.2 22 27-48 30-51 (250)
481 1vpl_A ABC transporter, ATP-bi 92.2 0.073 2.5E-06 50.5 3.1 22 27-48 42-63 (256)
482 1oix_A RAS-related protein RAB 92.2 0.09 3.1E-06 47.4 3.6 24 26-49 29-52 (191)
483 1q3t_A Cytidylate kinase; nucl 92.2 0.073 2.5E-06 50.0 3.1 26 23-48 13-38 (236)
484 2qi9_C Vitamin B12 import ATP- 92.2 0.074 2.5E-06 50.2 3.1 22 27-48 27-48 (249)
485 2zu0_C Probable ATP-dependent 92.1 0.075 2.6E-06 50.9 3.1 22 27-48 47-68 (267)
486 3v9p_A DTMP kinase, thymidylat 92.1 0.17 5.9E-06 46.8 5.5 24 26-49 25-48 (227)
487 3fkq_A NTRC-like two-domain pr 92.1 0.2 6.7E-06 50.7 6.4 45 23-69 140-185 (373)
488 1svm_A Large T antigen; AAA+ f 92.1 0.14 4.8E-06 51.5 5.1 23 26-48 169-191 (377)
489 1c9k_A COBU, adenosylcobinamid 92.0 0.13 4.4E-06 45.5 4.3 33 29-67 2-34 (180)
490 3kjh_A CO dehydrogenase/acetyl 92.0 0.15 5.1E-06 48.3 5.1 41 29-71 3-43 (254)
491 2ghi_A Transport protein; mult 92.0 0.08 2.7E-06 50.4 3.1 22 27-48 47-68 (260)
492 2nq2_C Hypothetical ABC transp 92.0 0.079 2.7E-06 50.2 3.0 22 27-48 32-53 (253)
493 2f9l_A RAB11B, member RAS onco 91.9 0.078 2.7E-06 48.2 2.9 24 26-49 5-28 (199)
494 2wjg_A FEOB, ferrous iron tran 91.9 0.12 4.1E-06 46.3 4.1 25 25-49 6-30 (188)
495 2ihy_A ABC transporter, ATP-bi 91.9 0.08 2.7E-06 51.0 3.1 22 27-48 48-69 (279)
496 2ixe_A Antigen peptide transpo 91.9 0.083 2.8E-06 50.7 3.1 22 27-48 46-67 (271)
497 2yz2_A Putative ABC transporte 91.8 0.084 2.9E-06 50.5 3.1 22 27-48 34-55 (266)
498 2dyk_A GTP-binding protein; GT 91.8 0.096 3.3E-06 45.4 3.2 23 27-49 2-24 (161)
499 4dzz_A Plasmid partitioning pr 91.7 0.19 6.4E-06 45.8 5.3 42 27-70 2-44 (206)
500 2v9p_A Replication protein E1; 91.7 0.09 3.1E-06 51.1 3.1 22 27-48 127-148 (305)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.1e-38 Score=344.40 Aligned_cols=316 Identities=19% Similarity=0.291 Sum_probs=244.1
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc--chhhhhcCCcEEEEEeCCcC--CHHHHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN--DQRVEEHFELKIWICISEDF--GERQIMTKI 77 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (680)
|||++++++|.++|... .+...++|+|+|+||+||||||+++++ +.+++.+|+.++|++++... +...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 59999999999999762 234679999999999999999999996 45788899999999988875 688999999
Q ss_pred HHHhcCCCC-------CCcCHHHHHHHHHHHhCCc-eEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 78 IKSITGQNQ-------GDLDIEQLQRILRVCLNGK-RYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 78 ~~~l~~~~~-------~~~~~~~~~~~~~~~l~~~-~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
+.+++.... ...+.+++...+.+.++++ ++|||+||+|+.+...|.. .+|++||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999985421 2335677888999999996 9999999998743222221 16899999999998776
Q ss_pred hhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHHHhh
Q 042863 150 VMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYVRDN 229 (680)
Q Consensus 150 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~ 229 (680)
.+.. ....+.+++|+++++++||.+.++... ..+...+++.+|+++|+|+|+|+..+|+.++.. .|+.+ ..
T Consensus 280 ~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~ 350 (549)
T 2a5y_B 280 AASQ--TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQ 350 (549)
T ss_dssp GCCS--CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HH
T ss_pred HcCC--CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HH
Confidence 5431 224689999999999999999976542 246777889999999999999999999998744 25433 11
Q ss_pred hhccccc-ccccchhhHhccccCCcHHHHHHHH-----------HhhcCCCCeeechHHHHHHHHHc--CCCCCCCCCCc
Q 042863 230 EIWKLEQ-KANDILPVLRFSYDQLPPRLKQCVA-----------YCCIFPKDYQFSSVYLVQFWMAQ--GLLHPLNENDE 295 (680)
Q Consensus 230 ~~~~~~~-~~~~l~~~~~~s~~~L~~~~~~~~~-----------~~~~f~~~~~~~~~~l~~~w~~~--g~~~~~~~~~~ 295 (680)
....... ....+..++..||+.|+++.+.||. ++++||+++.++ +..|+++ |++........
T Consensus 351 l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 351 LNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred hHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 1111111 2457889999999999999999998 999999999998 7899999 88876543344
Q ss_pred hhHHHHHHHHHHHhCCcccccccCccEeEEEEcHHHHHHHHHhhcccc
Q 042863 296 LDDIGMRSLKQLCSRSFFHDLVRGFEMFTFKMHDLIHDLAQLVAKGEF 343 (680)
Q Consensus 296 ~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~H~li~~~~~~~~~~e~ 343 (680)
.++... ++..|+++++++....+ ....|.||++++++++..+.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~-~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRM-PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECS-SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCC-CceEEEeChHHHHHHHHHHHHHH
Confidence 555555 99999999999875543 34479999999999998887665
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.3e-31 Score=293.52 Aligned_cols=283 Identities=20% Similarity=0.277 Sum_probs=216.9
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCc-EEEEEeCCcCCHHHHHHHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFEL-KIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|||++++++|.++|... ...++|+|+|+||+||||||++++++.+++..|+. ++|++++...+...++..++..
T Consensus 131 VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999999999752 23689999999999999999999986678888986 9999999988887777777665
Q ss_pred hcC---CC--CC------CcCHHHHHHHHHHHh---CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 81 ITG---QN--QG------DLDIEQLQRILRVCL---NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 81 l~~---~~--~~------~~~~~~~~~~~~~~l---~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
+.. .. .. +.+.+++...+.+.+ +++++||||||+|+ ...|+.+ ++|++||||||++.
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f-------~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF-------NLSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH-------HSSCCEEEECSCSH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh-------CCCeEEEEeccChH
Confidence 431 11 10 113445566666655 68999999999976 3334332 25889999999998
Q ss_pred HHHhhccCCCCCceeCC------CCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCC-C
Q 042863 147 VASVMGTRGGTTGYNLQ------GLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCST-D 219 (680)
Q Consensus 147 ~~~~~~~~~~~~~~~l~------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~-~ 219 (680)
+...+... ..+.++ +|+++|+++||.+..+.. .. +...+ .|+|+|+||.++|+.++... .
T Consensus 277 Va~~l~g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~e---eL~~e---ICgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 277 VTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQ---DLPRE---VLTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp HHHHHHHH---SSCEEEECSSSSCCCHHHHHHHHHHHHCCC----TT---THHHH---HCCCCHHHHHHHHHHHHHSCSS
T ss_pred HHHhcCCC---eEEEecCccccCCcCHHHHHHHHHHHcCCC----HH---HHHHH---HhCCCHHHHHHHHHHHhCCCCC
Confidence 77543321 234555 899999999999985322 11 22233 39999999999999998664 5
Q ss_pred hhhHHHHHhhhhcccccccccchhhHhccccCCcHHH-HHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhH
Q 042863 220 EHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRL-KQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDD 298 (680)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~-~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~ 298 (680)
...|... ....+..++..||+.|+++. |+||+++++||+++.|+...++..|.++| .+
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 5666542 23578999999999999999 99999999999999999999999997765 13
Q ss_pred HHHHHHHHHHhCCcccccccCccEeEEEEcHHHHHHH
Q 042863 299 IGMRSLKQLCSRSFFHDLVRGFEMFTFKMHDLIHDLA 335 (680)
Q Consensus 299 ~~~~~l~~L~~~sll~~~~~~~~~~~~~~H~li~~~~ 335 (680)
.+..+++.|+++|+++.. .....|+||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d---~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ---PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC---SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEe---CCCCEEEehHHHHHHh
Confidence 477889999999999863 2234799999998844
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1e-30 Score=315.34 Aligned_cols=308 Identities=23% Similarity=0.320 Sum_probs=237.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhh-hhcC-CcEEEEEeCCcCC--HHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRV-EEHF-ELKIWICISEDFG--ERQIMTK 76 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~~-~~~~~~~~~~~~~--~~~~~~~ 76 (680)
||||++++++|.+.|... ++..++|+|+|+||+||||||++++++.+. ...| +.++|++++.... ....+..
T Consensus 126 ~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 799999999999999752 356799999999999999999999986443 3444 6788999887443 3344666
Q ss_pred HHHHhcCCC----CCCcCHHHHHHHHHHHhCCc--eEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHh
Q 042863 77 IIKSITGQN----QGDLDIEQLQRILRVCLNGK--RYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASV 150 (680)
Q Consensus 77 ~~~~l~~~~----~~~~~~~~~~~~~~~~l~~~--~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~ 150 (680)
++..+.... ....+.+++...+...+.++ ++||||||+|+. ..+ ...+++++||||||++.+...
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----~~~----~~~~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----WVL----KAFDNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----HHH----TTTCSSCEEEEEESSTTTTTT
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----HHH----HhhcCCCEEEEEcCCHHHHHh
Confidence 777766432 23456788889999999877 999999999753 222 223678999999999977633
Q ss_pred hccCCCCCceeCCC-CChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHHHhh
Q 042863 151 MGTRGGTTGYNLQG-LPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYVRDN 229 (680)
Q Consensus 151 ~~~~~~~~~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~ 229 (680)
+. .....+.+++ |+++|+++||...++.... ...+.+.+|+++|+|+||||.++|++++... ..|......
T Consensus 273 ~~--~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~----~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~ 344 (1249)
T 3sfz_A 273 VM--GPKHVVPVESGLGREKGLEILSLFVNMKKE----DLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQ 344 (1249)
T ss_dssp CC--SCBCCEECCSSCCHHHHHHHHHHHHTSCST----TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHH
T ss_pred hc--CCceEEEecCCCCHHHHHHHHHHhhCCChh----hCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHH
Confidence 21 2336788886 9999999999998854322 2235688999999999999999999998554 357655543
Q ss_pred hhccc----cc----ccccchhhHhccccCCcHHHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhHHHH
Q 042863 230 EIWKL----EQ----KANDILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDDIGM 301 (680)
Q Consensus 230 ~~~~~----~~----~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~ 301 (680)
..... .. ..+.+..++.+||+.|+++.|+||.++++||+++.++...++..|.++ .+.+.
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~ 412 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVE 412 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHH
Confidence 32221 11 113689999999999999999999999999999999999999999442 35678
Q ss_pred HHHHHHHhCCcccccccCccEeEEEEcHHHHHHHHHhhccc
Q 042863 302 RSLKQLCSRSFFHDLVRGFEMFTFKMHDLIHDLAQLVAKGE 342 (680)
Q Consensus 302 ~~l~~L~~~sll~~~~~~~~~~~~~~H~li~~~~~~~~~~e 342 (680)
.++..|+++++++... ++....|+||++++++++....++
T Consensus 413 ~~l~~L~~~sl~~~~~-~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNR-NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTTSCEEEE-SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHhccceEEec-CCCceEEEecHHHHHHHHhhhhHH
Confidence 8899999999998543 334457999999999999887665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=7.8e-30 Score=281.82 Aligned_cols=303 Identities=23% Similarity=0.339 Sum_probs=224.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhh-hhcC-CcEEEEEeCCcCCHHHH---HH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRV-EEHF-ELKIWICISEDFGERQI---MT 75 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~---~~ 75 (680)
||||+++++++.+.+... .+..++|+|+|+||+||||||.++++..+. ...| +.++|++++.. +...+ +.
T Consensus 126 ~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 799999999999999752 245789999999999999999999986555 6778 47999998765 33333 33
Q ss_pred HHHHHhcCC----CCCCcCHHHHHHHHHHHhCC--ceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 76 KIIKSITGQ----NQGDLDIEQLQRILRVCLNG--KRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 76 ~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~--~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
.++..++.. .....+.+.+...+...+.+ +++|||+||+|+. ..+.. .+++++||+|||++.+..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~~----l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLKA----FDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHHT----TCSSCEEEEEESCGGGGT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHHH----hcCCCeEEEECCCcHHHH
Confidence 344455421 22345677777788877765 6899999999752 23322 256889999999987654
Q ss_pred hhccCCCCCceeC---CCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhhccCCChhhHHHH
Q 042863 150 VMGTRGGTTGYNL---QGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEYV 226 (680)
Q Consensus 150 ~~~~~~~~~~~~l---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~~ 226 (680)
.+. ...+.+ ++|+++|+.+||...++... +...+.+.+|+++|+|+|+|+..+|+.++... ..|...
T Consensus 272 ~~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 272 SVM----GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp TCC----SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred hcC----CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 432 133443 58999999999999886421 11235678999999999999999999997543 357655
Q ss_pred Hhhhhccc----c----cccccchhhHhccccCCcHHHHHHHHHhhcCCCCeeechHHHHHHHHHcCCCCCCCCCCchhH
Q 042863 227 RDNEIWKL----E----QKANDILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQFSSVYLVQFWMAQGLLHPLNENDELDD 298 (680)
Q Consensus 227 ~~~~~~~~----~----~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~ 298 (680)
........ . .....+..++..+|+.|+++.|.||.++|+||++..++...+...|... ..
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~ 409 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TE 409 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HH
Confidence 44322211 0 1123688899999999999999999999999999999988888777431 23
Q ss_pred HHHHHHHHHHhCCcccccccCccEeEEEEcHHHHHHHHHhhc
Q 042863 299 IGMRSLKQLCSRSFFHDLVRGFEMFTFKMHDLIHDLAQLVAK 340 (680)
Q Consensus 299 ~~~~~l~~L~~~sll~~~~~~~~~~~~~~H~li~~~~~~~~~ 340 (680)
.....+..|++++++.... ++....|+||++++++++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~-~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDR-NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEE-ETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCcCeEEec-CCCccEEEEcHHHHHHHHhhhh
Confidence 4677899999999998433 2344579999999999988743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.8e-24 Score=245.85 Aligned_cols=296 Identities=18% Similarity=0.158 Sum_probs=219.8
Q ss_pred CCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcc-cccccccCcCCc
Q 042863 354 PKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIE-ALPKEIGNLKHM 432 (680)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L 432 (680)
...++.+.+.++.... ..+..+.++++|+.|++++|.. ....+..+..+++|+.|++++|.++ .+|..+..+++|
T Consensus 393 ~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYL---SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSEE---ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCcc---cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 3457778777665432 3456678889999999988753 2233456788899999999999888 778888889999
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccc-cccccCcccccceeecccc
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL-QDSGIGCLVSLRCLIISHC 511 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~ 511 (680)
++|++++|...+.+|..+..+++|++|++++|...+.+|..++.+++|+.|++++|.+.. .|..+..+++|+.|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 999999998877888888889999999999998888889889999999999999998874 4777888899999999888
Q ss_pred cCcccchhh----------------------------------------------------------------------c
Q 042863 512 RNLEYLFDD----------------------------------------------------------------------I 521 (680)
Q Consensus 512 ~~~~~~~~~----------------------------------------------------------------------~ 521 (680)
...+.+|.. +
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 655444432 3
Q ss_pred cCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccc
Q 042863 522 DQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELP 601 (680)
Q Consensus 522 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 601 (680)
+.+++|+.|++++|.+.+.+|..++++++|+.|++++|.. ...++.....+++|+.|++++|.....+|
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l-----------~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-----------SGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC-----------CSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc-----------CCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 3457788899999988888998899999999999998852 23456667778899999999997666778
Q ss_pred hhhhhhhcccCCccceeeeccCCCCCCCCcC--CCCCCeEEEcCCccccc----ccCCCCCCCCccccccceeE
Q 042863 602 QWLLQESLRNFQALEGLVIGNCPKLLSLPED--MLHLKTLRIRGCPALSD----RCKPLTGEDWHKIAHVAHIK 669 (680)
Q Consensus 602 ~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~--~~~L~~l~l~~c~~l~~----~~~~~~~~~~~~~~~l~~~~ 669 (680)
..+ ..+++|+.|++++|+..+.+|.. +.++....+.||+.+.. .|.....++|++++|.++.+
T Consensus 698 ~~l-----~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 698 QAM-----SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGG-----GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hHH-----hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 654 48899999999999877777763 34555555666654332 68889999999999998654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.2e-23 Score=209.53 Aligned_cols=223 Identities=22% Similarity=0.298 Sum_probs=143.9
Q ss_pred cCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 379 LGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
.+.++.|++++|... .++..+..+++|++|+|++|.++.+|..+.++++|++|++++|.+. .+|..++.+++|++
T Consensus 80 ~~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 366777777776532 2233456677777777777777777777777777777777777544 66777777777777
Q ss_pred EecCCccccccCcccccc---------cCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccce
Q 042863 459 LNLEECLELEELPKDIRY---------LVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRS 529 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 529 (680)
|++++|...+.+|..+.. +++|+.|++++|.++.++..+..+++|+.|++++|. ++.+|..++.+++|+.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCE
Confidence 777777777777766543 667777777777766666666667777777777655 3345566666677777
Q ss_pred eecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhc
Q 042863 530 LLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESL 609 (680)
Q Consensus 530 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 609 (680)
|++++|...+.+|..++.+++|++|++++|.... .++.....+++|+.|++++|+.++.+|.++.
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~---- 298 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-----------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA---- 298 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-----------BCCTTGGGCTTCCEEECTTCTTCCCCCGGGG----
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-----------hcchhhhcCCCCCEEeCCCCCchhhccHHHh----
Confidence 7777766666666666666666666666664322 2222334455566666666555555554433
Q ss_pred ccCCccceeeeccC
Q 042863 610 RNFQALEGLVIGNC 623 (680)
Q Consensus 610 ~~~~~L~~L~l~~~ 623 (680)
.+++|+.+++..+
T Consensus 299 -~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 -QLPANCIILVPPH 311 (328)
T ss_dssp -GSCTTCEEECCGG
T ss_pred -hccCceEEeCCHH
Confidence 5555555555543
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=8.1e-24 Score=213.55 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=166.6
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCC-CCcc-cccccccCcCCcceeccccccCCCccChhhcCCCCCc
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSG-SAIE-ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQ 457 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 457 (680)
.+++.|+++++..... ..++..+..+++|++|++++ |.+. .+|..+.++++|++|++++|...+.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCC-cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 3566677766543210 02234566777777777774 6666 5666777777777777777765556777777777777
Q ss_pred EEecCCccccccCcccccccCcccEEEecccccc-ccccccCccc-ccceeecccccCcccchhhccCCcccceeecccc
Q 042863 458 TLNLEECLELEELPKDIRYLVSLRVFEVTTKQKS-LQDSGIGCLV-SLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGC 535 (680)
Q Consensus 458 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 535 (680)
+|++++|.+.+.+|..+..+++|++|++++|.++ ..+..+..++ +|+.|++++|...+.+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 7777777666667777777777777777777776 4466666666 777777777765556666666665 777777777
Q ss_pred cCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCcc
Q 042863 536 PCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQAL 615 (680)
Q Consensus 536 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L 615 (680)
.+.+.+|..+..+++|+.|++++|.... .......+++|+.|++++|.....+|.++ ..+++|
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L 270 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAF------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGL-----TQLKFL 270 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECC------------BGGGCCCCTTCCEEECCSSCCEECCCGGG-----GGCTTC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceee------------ecCcccccCCCCEEECcCCcccCcCChHH-----hcCcCC
Confidence 7766677777777777777777764211 01113446777778887775443566543 377888
Q ss_pred ceeeeccCCCCCCCCc--CCCCCCeEEEcCCccccc
Q 042863 616 EGLVIGNCPKLLSLPE--DMLHLKTLRIRGCPALSD 649 (680)
Q Consensus 616 ~~L~l~~~~~~~~l~~--~~~~L~~l~l~~c~~l~~ 649 (680)
+.|++++|+..+.+|. .+++|+.+++.+++.+..
T Consensus 271 ~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 8888888766555654 356777777777776543
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.7e-22 Score=216.14 Aligned_cols=300 Identities=14% Similarity=0.097 Sum_probs=210.8
Q ss_pred CCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCC
Q 042863 353 IPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKH 431 (680)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~ 431 (680)
.+.+++++.+.++..... .+..+.++++|++|++++|.. .....+..+.++++|++|+|++|.++.+ |..+.++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcC-ChhHhccCccccEEECcCCcc--cceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 557899999998876542 355688999999999998753 2223345688999999999999999855 678999999
Q ss_pred cceeccccccCCCccChh--hcCCCCCcEEecCCccccccCccc-ccccCcccEEEecccccccc-ccccC---------
Q 042863 432 MRYLDLSRNYKIKKLPNA--ICELQSLQTLNLEECLELEELPKD-IRYLVSLRVFEVTTKQKSLQ-DSGIG--------- 498 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~l~--------- 498 (680)
|++|++++|...+..+.. +..+++|++|++++|...+..|.. +..+++|+.|++++|.+... +..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999999766655544 788999999999999877666765 78999999999999988765 32232
Q ss_pred -------------------------cccccceeecccccCcccchhhcc-------------------------------
Q 042863 499 -------------------------CLVSLRCLIISHCRNLEYLFDDID------------------------------- 522 (680)
Q Consensus 499 -------------------------~l~~L~~L~l~~~~~~~~~~~~~~------------------------------- 522 (680)
.+++|+.|++++|.....++..+.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 236788888888765443333221
Q ss_pred --------CCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccc
Q 042863 523 --------QLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQV 594 (680)
Q Consensus 523 --------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 594 (680)
..++|+.|++++|.+.+.+|..+..+++|++|++++|.... ..+.....+++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-----------IDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSS
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-----------cChhHhcCcccCCEEECCCC
Confidence 12567788888877777777778888888888888875322 11234456778888888887
Q ss_pred cCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCcccccccCCCCCCCCccccccceeEec
Q 042863 595 TPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLD 671 (680)
Q Consensus 595 ~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~ 671 (680)
. ++.++. ..+..+++|+.|++++|......+. .+++|+.|++++|.- +. .....+..+.+++.+++.
T Consensus 334 ~-l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~----~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 334 F-LGSIDS----RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KS----VPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp C-CCEECG----GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SC----CCTTTTTTCTTCCEEECC
T ss_pred c-cCCcCh----hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc-cc----CCHhHhccCCcccEEEcc
Confidence 4 444432 2334778888888888864333332 467888888888742 22 222234556677777777
Q ss_pred Ccccc
Q 042863 672 DEIIK 676 (680)
Q Consensus 672 ~~~~~ 676 (680)
++-|.
T Consensus 404 ~N~l~ 408 (455)
T 3v47_A 404 TNPWD 408 (455)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 66554
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.7e-22 Score=229.57 Aligned_cols=259 Identities=18% Similarity=0.189 Sum_probs=196.7
Q ss_pred CcceeEEEeCCCCcc-cccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEE
Q 042863 406 SQFLRVLNLSGSAIE-ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFE 484 (680)
Q Consensus 406 ~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 484 (680)
+++|++|++++|.++ .+|..+.++++|++|++++|...+.+|..++.+++|++|++++|...+.+|..++.+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 667888888888887 6777888899999999999887778888888899999999999888888898899999999999
Q ss_pred ecccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCcc
Q 042863 485 VTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLS 563 (680)
Q Consensus 485 l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 563 (680)
+++|.+... +..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|....
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 999988854 7778889999999999988777888888999999999999999888899989999999999999885331
Q ss_pred ccccccccC------------------------------------------------------------CCCcCcccCCC
Q 042863 564 LNLSMQLEG------------------------------------------------------------EGSHQASNTTR 583 (680)
Q Consensus 564 ~~~~~~~~~------------------------------------------------------------~~~~~~~~~~~ 583 (680)
. .+..... ....+.....+
T Consensus 553 ~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 553 T-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp B-CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred c-CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 1 0000000 00112234456
Q ss_pred CcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCcccccccCCCCCCCCc
Q 042863 584 PHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCPALSDRCKPLTGEDWH 660 (680)
Q Consensus 584 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~~l~~~~~~~~~~~~~ 660 (680)
++|+.|++++|.....+|..+ +.+++|+.|++++|...+.+|. .+++|+.|++++|.. +..+. ..+.
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l-----~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip----~~l~ 701 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEI-----GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIP----QAMS 701 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGG-----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCC----GGGG
T ss_pred ccccEEECcCCcccccCCHHH-----hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCC----hHHh
Confidence 788889999887666777644 4888889999998887777876 466888888888843 22111 2344
Q ss_pred cccccceeEecCccc
Q 042863 661 KIAHVAHIKLDDEII 675 (680)
Q Consensus 661 ~~~~l~~~~~~~~~~ 675 (680)
.+..+..+++.++-+
T Consensus 702 ~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNL 716 (768)
T ss_dssp GCCCCSEEECCSSEE
T ss_pred CCCCCCEEECcCCcc
Confidence 555666666655543
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=216.55 Aligned_cols=274 Identities=17% Similarity=0.174 Sum_probs=180.2
Q ss_pred CCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCc
Q 042863 351 QSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNL 429 (680)
Q Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l 429 (680)
...+..++.+.+.++.+.... +..|.++++|+.|++++|... ...+..+.++++|++|+|++|.++.+|. .+.++
T Consensus 28 ~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 28 EGIPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp SCCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 345567888888887755432 345788899999999887532 2334568888999999999999887775 46788
Q ss_pred CCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccc-cccCcccccceeec
Q 042863 430 KHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQD-SGIGCLVSLRCLII 508 (680)
Q Consensus 430 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l 508 (680)
++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.+...+ ..+..+++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 99999999988776666777888889999999888776666777888888888888888887764 34677788888888
Q ss_pred ccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccc
Q 042863 509 SHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRK 588 (680)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 588 (680)
++|......+..+..+++|+.|++++|...+.++.......+|++|++++|..-... ......+++|+.
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~ 252 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-----------YLAVRHLVYLRF 252 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-----------HHHHTTCTTCCE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-----------HHHhcCccccCe
Confidence 877654444446677777777777777666666655555556777777666321100 112334455555
Q ss_pred eecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCC---cCCCCCCeEEEcCC
Q 042863 589 LLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP---EDMLHLKTLRIRGC 644 (680)
Q Consensus 589 L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~---~~~~~L~~l~l~~c 644 (680)
|++++|. ++.++. ..+..+++|+.|++++|......+ ..+++|+.|++++|
T Consensus 253 L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 253 LNLSYNP-ISTIEG----SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp EECCSSC-CCEECT----TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred eECCCCc-CCccCh----hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 5555553 333332 122345555555555553222111 13345555555554
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=9.6e-23 Score=205.67 Aligned_cols=253 Identities=17% Similarity=0.140 Sum_probs=212.4
Q ss_pred CceeEEEEeccCcchh-hhHHHhhhcCCccEEEEec-CCcccchHHHHHhhccCcceeEEEeCCCCcc-cccccccCcCC
Q 042863 355 KRVRHLSFVGANASRK-DFSRFLSDLGRVRTIFFSI-NDEKVSQSFVRSCISKSQFLRVLNLSGSAIE-ALPKEIGNLKH 431 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~ 431 (680)
.+++.+.+.++..... .++..+.++++|++|++++ |.. ...++..+..+++|++|+|++|.++ .+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 4689999998876531 4566789999999999994 642 2233456889999999999999998 88889999999
Q ss_pred cceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccC-cccEEEeccccccc-cccccCcccccceeecc
Q 042863 432 MRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLV-SLRVFEVTTKQKSL-QDSGIGCLVSLRCLIIS 509 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~ 509 (680)
|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..++.++ +|+.|++++|.+.. .+..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999988778999999999999999999988889999999998 99999999999984 467777776 9999999
Q ss_pred cccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccce
Q 042863 510 HCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKL 589 (680)
Q Consensus 510 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 589 (680)
+|...+..+..+..+++|+.|++++|.+.+.++. +..+++|++|++++|.... ..+.....+++|+.|
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-----------~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-----------TLPQGLTQLKFLHSL 273 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-----------CCCGGGGGCTTCCEE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-----------cCChHHhcCcCCCEE
Confidence 9987667888899999999999999988766665 7889999999999986321 234456678999999
Q ss_pred ecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCC
Q 042863 590 LIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSL 629 (680)
Q Consensus 590 ~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 629 (680)
++++|.....+|.. ..+++|+.|++++|+.+...
T Consensus 274 ~Ls~N~l~~~ip~~------~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG------GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ECCSSEEEEECCCS------TTGGGSCGGGTCSSSEEEST
T ss_pred ECcCCcccccCCCC------ccccccChHHhcCCCCccCC
Confidence 99999755577753 47899999999999865543
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.7e-22 Score=203.64 Aligned_cols=218 Identities=24% Similarity=0.331 Sum_probs=186.7
Q ss_pred cCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEE
Q 042863 405 KSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFE 484 (680)
Q Consensus 405 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 484 (680)
..+.++.|+|++|.++.+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 468899999999999999999999999999999999655 88988999999999999998665 8999999999999999
Q ss_pred ecccccccc-ccccC---------cccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeE
Q 042863 485 VTTKQKSLQ-DSGIG---------CLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETL 554 (680)
Q Consensus 485 l~~~~~~~~-~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 554 (680)
+++|+.... +..+. .+++|+.|++++|. ++.+|..++.+++|+.|++++|.+. .+|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEE
Confidence 999866544 55554 48999999999986 5588989999999999999999876 577779999999999
Q ss_pred eecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCC-
Q 042863 555 MFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDM- 633 (680)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~- 633 (680)
++++|.... ..+.....+++|+.|++++|..+..+|..+. .+++|+.|++++|+..+.+|..+
T Consensus 235 ~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-----~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 235 DLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-----RLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp ECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-----GCTTCCEEECTTCTTCCCCCGGGG
T ss_pred ECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhh-----cCCCCCEEeCCCCCchhhccHHHh
Confidence 999986443 3445567789999999999999988986544 89999999999999999999865
Q ss_pred --CCCCeEEEc
Q 042863 634 --LHLKTLRIR 642 (680)
Q Consensus 634 --~~L~~l~l~ 642 (680)
++|+.+++.
T Consensus 299 ~L~~L~~l~l~ 309 (328)
T 4fcg_A 299 QLPANCIILVP 309 (328)
T ss_dssp GSCTTCEEECC
T ss_pred hccCceEEeCC
Confidence 455555554
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.7e-22 Score=224.18 Aligned_cols=265 Identities=15% Similarity=0.149 Sum_probs=188.7
Q ss_pred HHHhhccCcceeEEEeCCCCccc------------------cccccc--CcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 399 VRSCISKSQFLRVLNLSGSAIEA------------------LPKEIG--NLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 399 ~~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
++..++++++|++|+|++|.++. +|..+. ++++|++|++++|...+.+|..++.+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 34557788888899998888886 888888 8888899998888888888888888888888
Q ss_pred EecCCcc-ccc-cCccccccc------CcccEEEecccccccccc--ccCcccccceeecccccCcccchhhccCCcccc
Q 042863 459 LNLEECL-ELE-ELPKDIRYL------VSLRVFEVTTKQKSLQDS--GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLR 528 (680)
Q Consensus 459 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 528 (680)
|++++|. ..+ .+|..++.+ ++|+.|++++|.++.+|. .+..+++|+.|++++|...+.+| .++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 8888887 555 688777776 888888888888887776 78888888888888877655777 777788888
Q ss_pred eeecccccCcccCCccCCCCCC-cCeEeecCCCCccccccccc--------------cCCCCcCcccC-------CCCcc
Q 042863 529 SLLIAGCPCLISLPPAMRYLSS-LETLMFVECESLSLNLSMQL--------------EGEGSHQASNT-------TRPHL 586 (680)
Q Consensus 529 ~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~L 586 (680)
.|++++|.+. .+|..+..+++ |++|++++|.....+..... ......+.... .+++|
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 8888887655 77777777777 88888877753321100000 00011111122 45688
Q ss_pred cceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCCC-----------CCCeEEEcCCcccccccCCCC
Q 042863 587 RKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDML-----------HLKTLRIRGCPALSDRCKPLT 655 (680)
Q Consensus 587 ~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~-----------~L~~l~l~~c~~l~~~~~~~~ 655 (680)
+.|++++|. ++.+|..+. ..+++|+.|++++|.. +.+|.... +|+.|++++|... . +.
T Consensus 436 ~~L~Ls~N~-l~~lp~~~~----~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~----lp 504 (636)
T 4eco_A 436 SSINLSNNQ-ISKFPKELF----STGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K----LS 504 (636)
T ss_dssp EEEECCSSC-CCSCCTHHH----HTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-B----CC
T ss_pred CEEECcCCc-cCcCCHHHH----ccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCC-c----cC
Confidence 888888884 567775433 3688999999998864 46665321 8899999988432 1 11
Q ss_pred CCCCc--cccccceeEecCccccc
Q 042863 656 GEDWH--KIAHVAHIKLDDEIIKS 677 (680)
Q Consensus 656 ~~~~~--~~~~l~~~~~~~~~~~~ 677 (680)
..+. .+.++..+++.++.+.+
T Consensus 505 -~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 505 -DDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp -GGGSTTTCTTCCEEECCSSCCSS
T ss_pred -hhhhhccCCCcCEEECCCCCCCC
Confidence 2333 67788888887776654
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.5e-21 Score=202.27 Aligned_cols=263 Identities=16% Similarity=0.138 Sum_probs=169.5
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccc-ccccCcCCcc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALP-KEIGNLKHMR 433 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~ 433 (680)
.+++.+.+.++...... ...+..+++|++|++++|... ...+..+..+++|++|+|++|.++.++ ..+.++++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchhhCC-hhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 56788888876644322 345788899999999887532 233346788899999999999888665 4578889999
Q ss_pred eeccccccCCCccChh-hcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceee-----
Q 042863 434 YLDLSRNYKIKKLPNA-ICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLI----- 507 (680)
Q Consensus 434 ~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~----- 507 (680)
+|++++|... .+|.. +..+++|++|++++|......|..+..+++|+.|++++|.+...+ +..+++|+.|+
T Consensus 121 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence 9999988544 55544 578889999999988766656667888888999998888876552 22233333333
Q ss_pred -----------------------------------cccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcC
Q 042863 508 -----------------------------------ISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLE 552 (680)
Q Consensus 508 -----------------------------------l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 552 (680)
+++|.. +.. +.+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-ccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 333221 111 2345556666666666665555555566666666
Q ss_pred eEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCC-c
Q 042863 553 TLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP-E 631 (680)
Q Consensus 553 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~-~ 631 (680)
+|++++|.... ++.....+++|+.|++++|. +..+|..+. .+++|+.|++++|+. +.++ .
T Consensus 276 ~L~L~~n~l~~------------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----~l~~L~~L~L~~N~i-~~~~~~ 336 (390)
T 3o6n_A 276 RLYISNNRLVA------------LNLYGQPIPTLKVLDLSHNH-LLHVERNQP-----QFDRLENLYLDHNSI-VTLKLS 336 (390)
T ss_dssp EEECCSSCCCE------------EECSSSCCTTCCEEECCSSC-CCCCGGGHH-----HHTTCSEEECCSSCC-CCCCCC
T ss_pred EEECCCCcCcc------------cCcccCCCCCCCEEECCCCc-ceecCcccc-----ccCcCCEEECCCCcc-ceeCch
Confidence 66666654211 12223456677777777763 556654433 567777777777763 3333 3
Q ss_pred CCCCCCeEEEcCCc
Q 042863 632 DMLHLKTLRIRGCP 645 (680)
Q Consensus 632 ~~~~L~~l~l~~c~ 645 (680)
.+++|+.|++++|+
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 56677777777765
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=6.7e-21 Score=195.81 Aligned_cols=278 Identities=19% Similarity=0.227 Sum_probs=196.9
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcce
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRY 434 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~ 434 (680)
++++.+.+.++...... . +..+++|++|++++|..... +.+..+++|++|++++|.++.++. +..+++|+.
T Consensus 66 ~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDIS--P-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCccccch--h-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 46777887777654322 2 67788888888887754321 247788888888888888877665 778888888
Q ss_pred eccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCc
Q 042863 435 LDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNL 514 (680)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 514 (680)
|++++|......+. +..+++|++|++++|... .++. +..+++|+.|++++|.+...+. +..+++|+.|++++|..
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l- 211 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQI- 211 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCC-
Confidence 88888866655554 778888888888887543 3333 7788888888888888777654 67788888888888653
Q ss_pred ccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccc
Q 042863 515 EYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQV 594 (680)
Q Consensus 515 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 594 (680)
..++. +..+++|+.|++++|.+.. ++. +..+++|++|++++|.... + .....+++|+.|++++|
T Consensus 212 ~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~------------~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 212 TDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD------------I-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC------------C-GGGTTCTTCCEEECCSS
T ss_pred CCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC------------C-hhHhcCCCcCEEEccCC
Confidence 33433 6778889999998887644 333 7788899999998885222 1 23567789999999998
Q ss_pred cCCcccchhhhhhhcccCCccceeeeccCCCCCCCC---cCCCCCCeEEEcCCcccccccCCCCCCCCccccccceeEec
Q 042863 595 TPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP---EDMLHLKTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLD 671 (680)
Q Consensus 595 ~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~---~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~ 671 (680)
. ++.++ .+..+++|+.|++++|+.....+ ..+++|+.|++++|+. +... ....+.++..+++.
T Consensus 276 ~-l~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~------~~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 276 Q-ISDIS------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIR------PLASLSKMDSADFA 341 (347)
T ss_dssp C-CCCCG------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCCG------GGGGCTTCSEESSS
T ss_pred c-cCCCh------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-cccc------Chhhhhccceeehh
Confidence 4 56654 24588999999999997544333 3688999999999963 3221 14556677777777
Q ss_pred Ccccc
Q 042863 672 DEIIK 676 (680)
Q Consensus 672 ~~~~~ 676 (680)
++.++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 76553
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=7.4e-22 Score=222.66 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=195.4
Q ss_pred HHHhhccCcceeEEEeCCCCccc------------------cccccc--CcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 399 VRSCISKSQFLRVLNLSGSAIEA------------------LPKEIG--NLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 399 ~~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
++..+.++++|++|+|++|.++. +|..++ ++++|++|++++|.+.+.+|..++.+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 34568888999999999999987 888877 8999999999999888889988999999999
Q ss_pred EecCCcc-ccc-cCcccccccC-------cccEEEecccccccccc--ccCcccccceeecccccCcccchhhccCCccc
Q 042863 459 LNLEECL-ELE-ELPKDIRYLV-------SLRVFEVTTKQKSLQDS--GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVL 527 (680)
Q Consensus 459 L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 527 (680)
|++++|. +.+ .+|..++.++ +|+.|++++|.+..+|. .+..+++|+.|++++|... .+| .++.+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 9999987 555 6887777665 89999999998887777 7888999999999887744 777 78888999
Q ss_pred ceeecccccCcccCCccCCCCCC-cCeEeecCCCCcccccccccc--------------CCCCcC-----cccCCCCccc
Q 042863 528 RSLLIAGCPCLISLPPAMRYLSS-LETLMFVECESLSLNLSMQLE--------------GEGSHQ-----ASNTTRPHLR 587 (680)
Q Consensus 528 ~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~--------------~~~~~~-----~~~~~~~~L~ 587 (680)
+.|++++|.+. .+|..+..+++ |++|++++|..-..+...... .....+ .....+++|+
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 99999988876 78888888888 999999888633221100000 000001 1111345888
Q ss_pred ceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCC-----------CCCCeEEEcCCcccccccCCCCC
Q 042863 588 KLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDM-----------LHLKTLRIRGCPALSDRCKPLTG 656 (680)
Q Consensus 588 ~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~-----------~~L~~l~l~~c~~l~~~~~~~~~ 656 (680)
.|++++|. +..+|..+. ..+++|+.|++++|. +..+|... ++|+.|++++|. ++. +.
T Consensus 677 ~L~Ls~N~-L~~lp~~~~----~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~----lp- 744 (876)
T 4ecn_A 677 TVTLSYNE-IQKFPTELF----ATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS----LS- 744 (876)
T ss_dssp EEECCSSC-CCSCCHHHH----HTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC----CC-
T ss_pred EEEccCCc-CCccCHHHH----ccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-Ccc----ch-
Confidence 99999885 567776543 378999999999986 44676532 289999999994 331 22
Q ss_pred CCCc--cccccceeEecCccccc
Q 042863 657 EDWH--KIAHVAHIKLDDEIIKS 677 (680)
Q Consensus 657 ~~~~--~~~~l~~~~~~~~~~~~ 677 (680)
..+. .+.+|..+++.++.+.+
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHhhhccCCCcCEEEeCCCCCCc
Confidence 1233 67788888888776554
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2e-21 Score=214.29 Aligned_cols=266 Identities=15% Similarity=0.104 Sum_probs=179.7
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCcCCcc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNLKHMR 433 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~ 433 (680)
.+++.+.+.++..... .+..+..+++|++|++++|... ...+..+..+++|++|+|++|.++.+++ .++++++|+
T Consensus 51 ~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3566667666543332 2345677888888888877532 2333457788888888888888886654 467888888
Q ss_pred eeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccc-----------
Q 042863 434 YLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVS----------- 502 (680)
Q Consensus 434 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~----------- 502 (680)
+|++++|.+....+..++.+++|++|++++|.+.+..|..++.+++|+.|++++|.+...+ +..+++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc
Confidence 8888888544333333577888888888888766666667788888888888888776542 222233
Q ss_pred -----------------------------cceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCe
Q 042863 503 -----------------------------LRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLET 553 (680)
Q Consensus 503 -----------------------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 553 (680)
|+.|++++|.... +..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 3444444433221 244667778888888888777777777888888888
Q ss_pred EeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCC
Q 042863 554 LMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDM 633 (680)
Q Consensus 554 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~ 633 (680)
|++++|.... ++.....+++|+.|++++|. +..+|..+. .+++|+.|++++|+....-...+
T Consensus 283 L~Ls~N~l~~------------l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~ 344 (597)
T 3oja_B 283 LYISNNRLVA------------LNLYGQPIPTLKVLDLSHNH-LLHVERNQP-----QFDRLENLYLDHNSIVTLKLSTH 344 (597)
T ss_dssp EECTTSCCCE------------EECSSSCCTTCCEEECCSSC-CCCCGGGHH-----HHTTCSEEECCSSCCCCCCCCTT
T ss_pred EECCCCCCCC------------CCcccccCCCCcEEECCCCC-CCccCcccc-----cCCCCCEEECCCCCCCCcChhhc
Confidence 8888875322 23334567888999998884 567776544 78889999998887543334567
Q ss_pred CCCCeEEEcCCcc
Q 042863 634 LHLKTLRIRGCPA 646 (680)
Q Consensus 634 ~~L~~l~l~~c~~ 646 (680)
++|+.|++++|+.
T Consensus 345 ~~L~~L~l~~N~~ 357 (597)
T 3oja_B 345 HTLKNLTLSHNDW 357 (597)
T ss_dssp CCCSEEECCSSCE
T ss_pred CCCCEEEeeCCCC
Confidence 8888899888863
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=7.1e-22 Score=211.26 Aligned_cols=271 Identities=14% Similarity=0.102 Sum_probs=192.7
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccc-cccc--ccCcCC
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEA-LPKE--IGNLKH 431 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~--~~~l~~ 431 (680)
..++.+.+.++.....-.+..+.++++|++|++++|... ...+..+.++++|++|+|++|.++. .+.. +.++++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC---EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccC---ccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 457777777665432222445677788888888776532 2233457777888888888887773 3333 677788
Q ss_pred cceeccccccCCCccChh-hcCCCCCcEEecCCccccccCcccccc----------------------------------
Q 042863 432 MRYLDLSRNYKIKKLPNA-ICELQSLQTLNLEECLELEELPKDIRY---------------------------------- 476 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------------- 476 (680)
|++|++++|...+..|.. +..+++|++|++++|...+..|..+..
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 888888877655555554 667788888888877665555544433
Q ss_pred cCcccEEEecccccccc-cccc-------------------------------------C--cccccceeecccccCccc
Q 042863 477 LVSLRVFEVTTKQKSLQ-DSGI-------------------------------------G--CLVSLRCLIISHCRNLEY 516 (680)
Q Consensus 477 l~~L~~L~l~~~~~~~~-~~~l-------------------------------------~--~l~~L~~L~l~~~~~~~~ 516 (680)
+++|+.|++++|.+... +..+ . ..++|+.|++++|...+.
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 35788888888866532 1111 1 125789999998887666
Q ss_pred chhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccC
Q 042863 517 LFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTP 596 (680)
Q Consensus 517 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 596 (680)
.+..++.+++|+.|++++|.+.+..|..+..+++|++|++++|..-. ..+.....+++|+.|++++|.
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~- 358 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-----------IDSRMFENLDKLEVLDLSYNH- 358 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECGGGGTTCTTCCEEECCSSC-
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-----------cChhHhcCcccCCEEECCCCc-
Confidence 77888999999999999999887778889999999999999985322 123445678999999999996
Q ss_pred Cccc-chhhhhhhcccCCccceeeeccCCCCCCCCc----CCCCCCeEEEcCCcc
Q 042863 597 LLEL-PQWLLQESLRNFQALEGLVIGNCPKLLSLPE----DMLHLKTLRIRGCPA 646 (680)
Q Consensus 597 l~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~L~~l~l~~c~~ 646 (680)
++.+ |. .+..+++|+.|++++|. ++.++. .+++|+.|++++|+.
T Consensus 359 l~~~~~~-----~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 359 IRALGDQ-----SFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCEECTT-----TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccChh-----hccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 4444 43 34589999999999986 455553 578999999999864
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.4e-21 Score=206.22 Aligned_cols=246 Identities=19% Similarity=0.194 Sum_probs=200.1
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
++++.|++++|... ...+..+.++++|++|+|++|.++.+ |..+.++++|++|++++|......+..+..+++|++
T Consensus 32 ~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIK---TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccc---eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 57999999998643 23345688999999999999999965 678999999999999999655444445789999999
Q ss_pred EecCCccccccCcccccccCcccEEEecccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeecccccC
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 537 (680)
|+|++|......|..+..+++|+.|++++|.+... +..+..+++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 99999988777788899999999999999998876 56788999999999999864443345688999999999999988
Q ss_pred cccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccce
Q 042863 538 LISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEG 617 (680)
Q Consensus 538 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~ 617 (680)
....+..+..+++|++|++++|..+.. ++.......+|+.|++++|. ++.+|.. .+..+++|+.
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~ 252 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDT-----------MTPNCLYGLNLTSLSITHCN-LTAVPYL----AVRHLVYLRF 252 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCE-----------ECTTTTTTCCCSEEEEESSC-CCSCCHH----HHTTCTTCCE
T ss_pred cEeChhhcccCcccceeeCCCCccccc-----------cCcccccCccccEEECcCCc-ccccCHH----HhcCccccCe
Confidence 777777899999999999999865441 22233344589999999994 6777743 3458999999
Q ss_pred eeeccCCCCCCCC----cCCCCCCeEEEcCCc
Q 042863 618 LVIGNCPKLLSLP----EDMLHLKTLRIRGCP 645 (680)
Q Consensus 618 L~l~~~~~~~~l~----~~~~~L~~l~l~~c~ 645 (680)
|++++|+. ..++ ..+++|+.|++++|.
T Consensus 253 L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 253 LNLSYNPI-STIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EECCSSCC-CEECTTSCTTCTTCCEEECCSSC
T ss_pred eECCCCcC-CccChhhccccccCCEEECCCCc
Confidence 99999974 4333 357899999999984
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2.6e-21 Score=214.70 Aligned_cols=303 Identities=15% Similarity=0.137 Sum_probs=189.9
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCC-cccchHHHHHhhcc------CcceeEEEeCCCCcccccc--c
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSIND-EKVSQSFVRSCISK------SQFLRVLNLSGSAIEALPK--E 425 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~------~~~L~~L~L~~~~~~~~~~--~ 425 (680)
..++.+.+.++.... .++..+.++++|+.|++++|. . ....++..+.. +++|++|++++|.++.+|. .
T Consensus 249 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l--~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 249 KDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGI--SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp TTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTS--CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred CCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCC--ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 467788888765433 345667788888888888774 2 22123333444 4888888888888888877 7
Q ss_pred ccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCc-ccEEEeccccccccccccCccc--c
Q 042863 426 IGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVS-LRVFEVTTKQKSLQDSGIGCLV--S 502 (680)
Q Consensus 426 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~l~~l~--~ 502 (680)
+.++++|++|++++|.+.+.+| .+..+++|++|++++|... .+|..++.+++ |+.|++++|.++.+|..+..++ +
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 8888888888888886665777 6777888888888887554 77777888887 8888888888776666655543 7
Q ss_pred cceeecccccCcccchhhcc-------CCcccceeecccccCcccCCc-cCCCCCCcCeEeecCCCCccccccc------
Q 042863 503 LRCLIISHCRNLEYLFDDID-------QLRVLRSLLIAGCPCLISLPP-AMRYLSSLETLMFVECESLSLNLSM------ 568 (680)
Q Consensus 503 L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~------ 568 (680)
|+.|++++|...+.+|..+. .+++|+.|++++|.+. .+|. .+..+++|++|++++|.....+...
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 77777777766555555555 5667777777777655 3443 2345667777777766432211000
Q ss_pred -------------cccCCCCcCcccC--CCCcccceecccccCCcccchhhhhhhcccCCccceeeecc------CCCCC
Q 042863 569 -------------QLEGEGSHQASNT--TRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGN------CPKLL 627 (680)
Q Consensus 569 -------------~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~------~~~~~ 627 (680)
.......++.... .+++|+.|++++|. ++.+|..+. .+++|+.|++++ |...+
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~-----~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPL-----NSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGG-----GCSSCCEEECCSCBCTTCCBCCC
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhh-----cCCCCCEEECCCCcccccCcccc
Confidence 0000112333333 56677777777764 444654433 677777777743 33344
Q ss_pred CCCc---CCCCCCeEEEcCCcccccccCCCCCCCCccccccceeEecCccccc
Q 042863 628 SLPE---DMLHLKTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLDDEIIKS 677 (680)
Q Consensus 628 ~l~~---~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 677 (680)
.+|. .+++|+.|++++|.. .. +.. ... .++..+++.++-+..
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l-~~-ip~----~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDI-RK-VNE----KIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CB-CCS----CCC--TTCCEEECCSCTTCE
T ss_pred cChHHHhcCCCCCEEECCCCcC-Cc-cCH----hHh--CcCCEEECcCCCCcc
Confidence 5554 356777777777754 21 111 111 567777776665543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=7.4e-21 Score=214.57 Aligned_cols=129 Identities=15% Similarity=0.133 Sum_probs=62.3
Q ss_pred hcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCC-ccc--ccccccCc-------CCcceeccccccCCCccC
Q 042863 378 DLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSA-IEA--LPKEIGNL-------KHMRYLDLSRNYKIKKLP 447 (680)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~--~~~~~~~l-------~~L~~L~l~~~~~~~~~~ 447 (680)
++++|+.|++++|.. ...++..+.++++|+.|+|++|. ++. +|..+.++ ++|++|++++|.+. .+|
T Consensus 489 ~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPN---MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GCTTCCEEEEESCTT---CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred cCCCCCEEECcCCCC---CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 555555555555431 11122344555555555555554 442 44333322 25555555555333 444
Q ss_pred h--hhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccc-cceeeccccc
Q 042863 448 N--AICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVS-LRCLIISHCR 512 (680)
Q Consensus 448 ~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~-L~~L~l~~~~ 512 (680)
. .++.+++|+.|++++|.+. .+| .++.+++|+.|++++|.+..++..+..+++ |+.|++++|.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 4 4555555555555555433 444 445555555555555555544444445554 5555555543
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.7e-20 Score=192.78 Aligned_cols=280 Identities=16% Similarity=0.205 Sum_probs=217.4
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcce
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRY 434 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~ 434 (680)
+.++.+.+.++..... + .+..+++|++|++++|...... . +..+++|++|++++|.++.++ .+.++++|++
T Consensus 44 ~~L~~L~l~~~~i~~~--~-~~~~~~~L~~L~l~~n~i~~~~----~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI--Q-GIEYLTNLEYLNLNGNQITDIS----P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCCC--T-TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccccEEEEeCCccccc--h-hhhhcCCccEEEccCCccccch----h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 4678888888775443 2 2778999999999998643222 1 889999999999999999875 5899999999
Q ss_pred eccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCc
Q 042863 435 LDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNL 514 (680)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 514 (680)
|++++|. ...++. +..+++|++|++++|.....++. +..+++|+.|++++|.+...+. +..+++|+.|++++|. +
T Consensus 115 L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l 189 (347)
T 4fmz_A 115 LYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-I 189 (347)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-C
T ss_pred EECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-c
Confidence 9999995 445555 88999999999999977766554 8899999999999999887754 7889999999999986 4
Q ss_pred ccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccc
Q 042863 515 EYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQV 594 (680)
Q Consensus 515 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 594 (680)
..++. +..+++|+.+++++|.+....+ +..+++|++|++++|.... .+. ...+++|+.|++++|
T Consensus 190 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~------------~~~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 190 EDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD------------LSP-LANLSQLTWLEIGTN 253 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------CGG-GTTCTTCCEEECCSS
T ss_pred ccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC------------Ccc-hhcCCCCCEEECCCC
Confidence 55554 7889999999999997654333 7889999999999985322 111 567899999999998
Q ss_pred cCCcccchhhhhhhcccCCccceeeeccCCCCCCCC--cCCCCCCeEEEcCCcccccccCCCCCCCCccccccceeEecC
Q 042863 595 TPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP--EDMLHLKTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLDD 672 (680)
Q Consensus 595 ~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~--~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 672 (680)
. ++.++ .+..+++|+.|++++|. ++.++ ..+++|+.|++++|...... ...+....+++.+++.+
T Consensus 254 ~-l~~~~------~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 254 Q-ISDIN------AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNED-----MEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp C-CCCCG------GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGG-----HHHHHTCTTCSEEECCS
T ss_pred c-cCCCh------hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcC-----hhHhhccccCCEEEccC
Confidence 4 55653 35589999999999995 55555 36889999999999542221 12234456777888777
Q ss_pred ccccc
Q 042863 673 EIIKS 677 (680)
Q Consensus 673 ~~~~~ 677 (680)
..+.+
T Consensus 321 n~l~~ 325 (347)
T 4fmz_A 321 NHITD 325 (347)
T ss_dssp SSCCC
T ss_pred Ccccc
Confidence 66543
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=3.6e-20 Score=196.46 Aligned_cols=257 Identities=15% Similarity=0.117 Sum_probs=156.1
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcce
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRY 434 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~ 434 (680)
+.++.+.+.++..... + +..+++|+.|++++|..... .+..+++|++|++++|.++.++ +..+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 3566666666654442 1 55667777777776653221 1566777777777777776654 666777777
Q ss_pred eccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCc
Q 042863 435 LDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNL 514 (680)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 514 (680)
|++++|...+ ++ ++.+++|++|++++|...+.+ .++.+++|+.|++++|.++.++ +..+++|+.|++++|..
T Consensus 132 L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l- 203 (457)
T 3bz5_A 132 LNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNI- 203 (457)
T ss_dssp EECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCC-
T ss_pred EECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcC-
Confidence 7777774433 33 566777777777777555555 3567777888888877777764 66777888888877653
Q ss_pred ccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccc
Q 042863 515 EYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQV 594 (680)
Q Consensus 515 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 594 (680)
+.+ .++.+++|+.|++++|.+.+ +| +..+++|+.|++++|..-..+ . .....+........+|+.|++++|
T Consensus 204 ~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-~---~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 204 TKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-V---STLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp SCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-C---TTCTTCCEEECTTCCCSCCCCTTC
T ss_pred Cee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-H---HHCCCCCEEeccCCCCCEEECCCC
Confidence 333 36677888888888887654 55 677888888888887532211 0 001111111112234555666666
Q ss_pred cCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCCCCCCeEEEcCCccc
Q 042863 595 TPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDMLHLKTLRIRGCPAL 647 (680)
Q Consensus 595 ~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~L~~l~l~~c~~l 647 (680)
..+..+| ...|++|+.|++++|+.++.+|...++|+.|++++|+.+
T Consensus 275 ~~~~~~~-------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 275 TQLIYFQ-------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp TTCCEEE-------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred ccCCccc-------ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 5554444 135677777777777666655555555555555555443
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.2e-20 Score=190.35 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=170.4
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
+.++.|++++|... ...+..+..+++|++|++++|.++.+ |..+.++++|++|++++|. ...+|..+. ++|++
T Consensus 52 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccE
Confidence 56777888776532 22233567778888888888887755 5677778888888888774 445555443 67888
Q ss_pred EecCCccccccCcccccccCcccEEEeccccccc---cccccCcccccceeecccccCcccchhhccCCcccceeecccc
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL---QDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGC 535 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 535 (680)
|++++|......+..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|. ++.+|..+. ++|+.|++++|
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTS
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCC
Confidence 8888776555555567777888888888777653 24556777788888887765 444554432 67888888887
Q ss_pred cCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCcc
Q 042863 536 PCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQAL 615 (680)
Q Consensus 536 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L 615 (680)
.+.+..+..+..+++|++|++++|..... .......+++|+.|++++|. +..+|.++ ..+++|
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~-l~~lp~~l-----~~l~~L 265 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAV-----------DNGSLANTPHLRELHLNNNK-LVKVPGGL-----ADHKYI 265 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEE-----------CTTTGGGSTTCCEEECCSSC-CSSCCTTT-----TTCSSC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCcee-----------ChhhccCCCCCCEEECCCCc-CccCChhh-----ccCCCc
Confidence 76666666777788888888887753221 11234456778888888874 56776543 377888
Q ss_pred ceeeeccCCCCCCCCc----------CCCCCCeEEEcCCcccccccCCCCCCCCccccccceeEecC
Q 042863 616 EGLVIGNCPKLLSLPE----------DMLHLKTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLDD 672 (680)
Q Consensus 616 ~~L~l~~~~~~~~l~~----------~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 672 (680)
+.|++++|+ ++.++. ..+.|+.+++.+++.....+. ...+....++..+++..
T Consensus 266 ~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~---~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 266 QVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ---PSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC---GGGGTTCCCGGGEEC--
T ss_pred CEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccC---ccccccccceeEEEecc
Confidence 888888876 344432 125677788888775332221 12445556666666543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=204.06 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=97.0
Q ss_pred CCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCc
Q 042863 353 IPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHM 432 (680)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L 432 (680)
.+..++.+.+.++..... .+..+.++++|++|++++|... ...+..+.++++|++|+|++|.++.+|.. .+++|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 19 LSQKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp CCTTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccccEEECCCCccccc-ChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 446889999998876543 3456889999999999998643 23345688999999999999999988876 89999
Q ss_pred ceeccccccCCC-ccChhhcCCCCCcEEecCCccccccCcccccccCcc--cEEEeccccc
Q 042863 433 RYLDLSRNYKIK-KLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL--RVFEVTTKQK 490 (680)
Q Consensus 433 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 490 (680)
++|++++|...+ .+|..++.+++|++|++++|.... ..+..+++| +.|++++|.+
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 999999997665 577889999999999998876543 223344444 5555544443
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.8e-20 Score=205.59 Aligned_cols=130 Identities=21% Similarity=0.150 Sum_probs=97.0
Q ss_pred CCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCC
Q 042863 352 SIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKH 431 (680)
Q Consensus 352 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 431 (680)
..+..++.+.+.++...... +..+.++++|++|++++|... ...+..+.++++|++|+|++|.++.+|.. .+++
T Consensus 49 ~~~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 49 DLPPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp TSCTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 34567899999988765432 356888999999999988643 33345688899999999999999988877 8999
Q ss_pred cceeccccccCCC-ccChhhcCCCCCcEEecCCccccccCcccccccCcc--cEEEeccccc
Q 042863 432 MRYLDLSRNYKIK-KLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL--RVFEVTTKQK 490 (680)
Q Consensus 432 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 490 (680)
|++|++++|.... ..|..++.+++|++|++++|..... .+..+++| +.|++++|.+
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 9999999996554 3467888999999999998865442 23333444 6666666655
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=3.9e-20 Score=212.41 Aligned_cols=181 Identities=16% Similarity=0.107 Sum_probs=132.1
Q ss_pred CCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCC
Q 042863 353 IPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKH 431 (680)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~ 431 (680)
.+..++.+.+.++..... .+..+.++++|++|++++|.. ...+.+..+.++++|++|+|++|.++.+ |..+.++++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 678899999998876543 245688999999999998742 2233345689999999999999999955 778999999
Q ss_pred cceeccccccCCCccChh--hcCCCCCcEEecCCccccccCc-ccccccCcccEEEecccccccc-ccccCcc--cccce
Q 042863 432 MRYLDLSRNYKIKKLPNA--ICELQSLQTLNLEECLELEELP-KDIRYLVSLRVFEVTTKQKSLQ-DSGIGCL--VSLRC 505 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l--~~L~~ 505 (680)
|++|++++|...+..|.. +..+++|++|++++|...+..+ ..++++++|++|++++|.+... +..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999999999777666654 7889999999999997766544 5789999999999999987664 3444444 55666
Q ss_pred eecccccCcccchhhccCCcc------cceeeccccc
Q 042863 506 LIISHCRNLEYLFDDIDQLRV------LRSLLIAGCP 536 (680)
Q Consensus 506 L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~~~ 536 (680)
|++++|......+..++.+++ |+.|++++|.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 666555444433333333332 4555555443
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=2.9e-20 Score=206.33 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=108.7
Q ss_pred CCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCc
Q 042863 351 QSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNL 429 (680)
Q Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l 429 (680)
...+..++.+.+.++..... .+..|.++++|++|++++|.. ....+..+.++++|++|+|++|.++.+ |..+.++
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQI---YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCCCCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCcc---ceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 44566788888888776543 245678888899999888753 223345678888888888888888744 5677888
Q ss_pred CCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccc-ccccCcccccc--ee
Q 042863 430 KHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLR--CL 506 (680)
Q Consensus 430 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~--~L 506 (680)
++|++|++++|...+..+..++.+++|++|++++|...+..++.+..+++|+.|++++|.+... +..+..+++|+ .|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 8888888888865554455677788888888888765542223333477778887777777655 33455556665 55
Q ss_pred eccccc
Q 042863 507 IISHCR 512 (680)
Q Consensus 507 ~l~~~~ 512 (680)
++++|.
T Consensus 185 ~l~~n~ 190 (606)
T 3t6q_A 185 NLNGND 190 (606)
T ss_dssp ECTTCC
T ss_pred ecCCCc
Confidence 555554
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=5.6e-20 Score=192.06 Aligned_cols=266 Identities=14% Similarity=0.107 Sum_probs=179.6
Q ss_pred hcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCC
Q 042863 378 DLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456 (680)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (680)
.+++++.|+++++.. ...+...+..+++|++|++++|.++.++. .+.++++|++|++++|......|..+..+++|
T Consensus 43 ~l~~l~~l~l~~~~l---~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEE---SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCch---hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 468999999998753 23334557889999999999999997664 78999999999999997666667778999999
Q ss_pred cEEecCCccccccCccc-ccccCcccEEEecccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeeccc
Q 042863 457 QTLNLEECLELEELPKD-IRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAG 534 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 534 (680)
++|++++|... .+|.. +..+++|++|++++|.+... +..+..+++|+.|++++|... .++ +..+++|+.|++++
T Consensus 120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCTTCSEEECCS
T ss_pred CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc--cccccccceeeccc
Confidence 99999998654 66665 58999999999999999887 456889999999999998633 221 22233333333333
Q ss_pred ccCcc------------------cCC--------------------ccCCCCCCcCeEeecCCCCccccccccccCCCCc
Q 042863 535 CPCLI------------------SLP--------------------PAMRYLSSLETLMFVECESLSLNLSMQLEGEGSH 576 (680)
Q Consensus 535 ~~~~~------------------~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 576 (680)
|.+.. .+| ..+..+++|++|++++|.... ..
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----------~~ 264 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-----------IM 264 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-----------EE
T ss_pred ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC-----------cC
Confidence 32211 011 224445555555555543111 11
Q ss_pred CcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCcccccccCC
Q 042863 577 QASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCPALSDRCKP 653 (680)
Q Consensus 577 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~~l~~~~~~ 653 (680)
+.....+++|+.|++++|. ++.++.. ...+++|+.|++++|+ +..+|. .+++|+.|++++|+-...
T Consensus 265 ~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~---- 333 (390)
T 3o6n_A 265 YHPFVKMQRLERLYISNNR-LVALNLY-----GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTL---- 333 (390)
T ss_dssp SGGGTTCSSCCEEECCSSC-CCEEECS-----SSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCC----
T ss_pred hhHccccccCCEEECCCCc-CcccCcc-----cCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCcccee----
Confidence 2334556777777777763 5555532 2367777788887774 455654 356788888887753211
Q ss_pred CCCCCCccccccceeEecCcccc
Q 042863 654 LTGEDWHKIAHVAHIKLDDEIIK 676 (680)
Q Consensus 654 ~~~~~~~~~~~l~~~~~~~~~~~ 676 (680)
......+++.+++.++-|.
T Consensus 334 ----~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 334 ----KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ----CCCTTCCCSEEECCSSCEE
T ss_pred ----CchhhccCCEEEcCCCCcc
Confidence 2344557777777766554
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=4.8e-20 Score=187.85 Aligned_cols=272 Identities=11% Similarity=0.072 Sum_probs=195.2
Q ss_pred CCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCC
Q 042863 352 SIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKH 431 (680)
Q Consensus 352 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 431 (680)
..++.++.+.+.++...... +..+.++++|++|++++|... ...+..+..+++|++|++++|.++.+|..+. ++
T Consensus 49 ~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 49 DLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp SCCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred cCCCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 34567888888877655422 335778889999999887632 2234567888999999999998888876654 78
Q ss_pred cceeccccccCCCccChhhcCCCCCcEEecCCccccc--cCcccccccCcccEEEeccccccccccccCcccccceeecc
Q 042863 432 MRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELE--ELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIIS 509 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 509 (680)
|++|++++|......+..+..+++|++|++++|.... ..+..+..+++|+.|++++|.+..++..+. ++|+.|+++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECT
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECC
Confidence 9999999886655555567888999999999886643 566778888899999999988887765543 789999998
Q ss_pred cccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccce
Q 042863 510 HCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKL 589 (680)
Q Consensus 510 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 589 (680)
+|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|... .++.....+++|+.|
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------------KVPGGLADHKYIQVV 268 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS------------SCCTTTTTCSSCCEE
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc------------cCChhhccCCCcCEE
Confidence 88754444677888899999999998877666667888889999999888522 233445677889999
Q ss_pred ecccccCCcccchhhhhhh--cccCCccceeeeccCCCCC-CCC-c---CCCCCCeEEEcCC
Q 042863 590 LIGQVTPLLELPQWLLQES--LRNFQALEGLVIGNCPKLL-SLP-E---DMLHLKTLRIRGC 644 (680)
Q Consensus 590 ~l~~~~~l~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~-~l~-~---~~~~L~~l~l~~c 644 (680)
++++|. ++.++....... ....++|+.|++++|+... .++ . .+.+|+.++++++
T Consensus 269 ~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 998885 666664322110 1135788889999988532 222 2 3567778887765
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.4e-20 Score=189.04 Aligned_cols=261 Identities=16% Similarity=0.149 Sum_probs=178.3
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
++|+.|++++|... ...+..+.++++|++|++++|.++.+ |..+.++++|++|++++|. ...+|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCE
Confidence 57888888877532 22234577888888888888888855 5678888888888888884 446665443 78888
Q ss_pred EecCCccccccCcccccccCcccEEEeccccccc---cccccCcccccceeecccccCcccchhhccCCcccceeecccc
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL---QDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGC 535 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 535 (680)
|++++|......+..+..+++|+.|++++|.+.. .+..+..+ +|+.|++++|. ++.+|..+. ++|+.|++++|
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCC
Confidence 8888876554444457888888888888888753 24455556 88888888866 445665443 68888888888
Q ss_pred cCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCcc
Q 042863 536 PCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQAL 615 (680)
Q Consensus 536 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L 615 (680)
.+.+..+..+..+++|++|++++|.... ..+.....+++|+.|++++|. ++.+|..+ ..+++|
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l-----~~l~~L 266 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRM-----------IENGSLSFLPTLRELHLDNNK-LSRVPAGL-----PDLKLL 266 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCC-----------CCTTGGGGCTTCCEEECCSSC-CCBCCTTG-----GGCTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCc-----------CChhHhhCCCCCCEEECCCCc-CeecChhh-----hcCccC
Confidence 7766666778888888888888874222 112234567888888888884 66777653 378888
Q ss_pred ceeeeccCCCCCCCCc----------CCCCCCeEEEcCCcccccccCCCCCCCCccccccceeEec
Q 042863 616 EGLVIGNCPKLLSLPE----------DMLHLKTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLD 671 (680)
Q Consensus 616 ~~L~l~~~~~~~~l~~----------~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~ 671 (680)
+.|++++|+ ++.++. ..++|+.|++.+++.....+.+ ..+..+.++..+.+.
T Consensus 267 ~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 267 QVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFG 328 (332)
T ss_dssp CEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC-
T ss_pred CEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCc---ccccccchhhhhhcc
Confidence 888888886 344432 1356788888888754322221 234555666666554
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.8e-20 Score=208.05 Aligned_cols=200 Identities=16% Similarity=0.099 Sum_probs=109.2
Q ss_pred ceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcce
Q 042863 356 RVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRY 434 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~ 434 (680)
.++.+.+.++..... .+..+..+++|+.|++++|... .++..+..+++|++|++++|.++.+ |..+.++++|++
T Consensus 255 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSC-CTTTTTTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccCcc-CHHHhccccCCCEEeccCCccC----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 355555555443321 1233556666666666665432 1223355666666666666666643 345566666666
Q ss_pred eccccccCCCccChh-hcCCCCCcEEecCCccccccC--cccccccCcccEEEecccccccc-ccccCcccccceeeccc
Q 042863 435 LDLSRNYKIKKLPNA-ICELQSLQTLNLEECLELEEL--PKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISH 510 (680)
Q Consensus 435 L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~ 510 (680)
|++++|.....+|.. +..+++|++|++++|...... |..+..+++|+.|++++|.+... +..+..+++|+.|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 666666544444332 555666666666665444332 44555666666666666655544 34455566666666666
Q ss_pred ccCcccchh-hccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 511 CRNLEYLFD-DIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 511 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
|......+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 543333222 24555666666666665555555555566666666666654
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=7.5e-20 Score=205.84 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=147.1
Q ss_pred CCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCc
Q 042863 351 QSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNL 429 (680)
Q Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l 429 (680)
...+.+++++.+.++..... .+..+.++++|++|++++|... ...+..+.++++|++|+|++|.++.+|. .+.++
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp SCSCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 34557899999998875543 2345888999999999987632 2334567889999999999999998876 58899
Q ss_pred CCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccccc-c--cCccccccee
Q 042863 430 KHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDS-G--IGCLVSLRCL 506 (680)
Q Consensus 430 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~--l~~l~~L~~L 506 (680)
++|++|++++|...+..|..++.+++|++|++++|...+..|..++.+++|++|++++|.++..+. . ...+++|+.|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 999999999997655555678899999999999998777777788889999999999998876633 2 2345788888
Q ss_pred ecccccCcccchhhccCC---------------------------cccceeecccccCcccCCccCCCCCC--cCeEeec
Q 042863 507 IISHCRNLEYLFDDIDQL---------------------------RVLRSLLIAGCPCLISLPPAMRYLSS--LETLMFV 557 (680)
Q Consensus 507 ~l~~~~~~~~~~~~~~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~ 557 (680)
++++|...+..+..+..+ ++|+.|++++|.+.+..|..+..++. |++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 888775333223222222 34555555555554444555554433 6666666
Q ss_pred CCC
Q 042863 558 ECE 560 (680)
Q Consensus 558 ~~~ 560 (680)
+|.
T Consensus 257 ~n~ 259 (680)
T 1ziw_A 257 YNN 259 (680)
T ss_dssp TSC
T ss_pred CCC
Confidence 653
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.5e-20 Score=202.30 Aligned_cols=266 Identities=14% Similarity=0.105 Sum_probs=183.0
Q ss_pred hcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCC
Q 042863 378 DLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456 (680)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (680)
.+++++.++++++.. ...++..+..+++|++|+|++|.++.+++ .+.++++|++|++++|.+.+..|..++.+++|
T Consensus 49 ~l~~l~~l~l~~~~l---~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEE---SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCC---CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 467899999988753 33444567889999999999999997654 89999999999999997766666778999999
Q ss_pred cEEecCCccccccCccc-ccccCcccEEEeccccccccc-cccCcccccceeecccccCcccchhhccCCcccceeeccc
Q 042863 457 QTLNLEECLELEELPKD-IRYLVSLRVFEVTTKQKSLQD-SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAG 534 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 534 (680)
++|+|++|.+. .+|.. ++.+++|++|++++|.+...+ ..+..+++|+.|++++|... .++ ++.+++|+.|++++
T Consensus 126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhccc
Confidence 99999998655 56655 589999999999999998874 46889999999999998633 222 22233333333333
Q ss_pred ccCcc------------------cC--------------------CccCCCCCCcCeEeecCCCCccccccccccCCCCc
Q 042863 535 CPCLI------------------SL--------------------PPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSH 576 (680)
Q Consensus 535 ~~~~~------------------~~--------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 576 (680)
|.+.+ .+ +..+..+++|+.|++++|.... ..
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~-----------~~ 270 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-----------IM 270 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-----------EE
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC-----------CC
Confidence 32211 00 1334555566666665553211 12
Q ss_pred CcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCcccccccCC
Q 042863 577 QASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCPALSDRCKP 653 (680)
Q Consensus 577 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~~l~~~~~~ 653 (680)
+.....+++|+.|++++|. +..+|... ..+++|+.|++++|+ +..+|. .+++|+.|++++|.....
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-----~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~~---- 339 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNR-LVALNLYG-----QPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTL---- 339 (597)
T ss_dssp SGGGTTCSSCCEEECTTSC-CCEEECSS-----SCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCC----
T ss_pred HHHhcCccCCCEEECCCCC-CCCCCccc-----ccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCCc----
Confidence 3345566777778877774 55555432 367788888888875 445664 356888888888753221
Q ss_pred CCCCCCccccccceeEecCcccc
Q 042863 654 LTGEDWHKIAHVAHIKLDDEIIK 676 (680)
Q Consensus 654 ~~~~~~~~~~~l~~~~~~~~~~~ 676 (680)
......+++.+++.++-|.
T Consensus 340 ----~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 340 ----KLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ----CCCTTCCCSEEECCSSCEE
T ss_pred ----ChhhcCCCCEEEeeCCCCC
Confidence 2344567777777766553
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=6e-20 Score=203.76 Aligned_cols=248 Identities=17% Similarity=0.077 Sum_probs=120.9
Q ss_pred hhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc--------------------cccCcCCccee
Q 042863 376 LSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK--------------------EIGNLKHMRYL 435 (680)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--------------------~~~~l~~L~~L 435 (680)
+..+++|+.|+++++...... .+..+++|+.|++++|.+..+|. .+..+++|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh-----hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEE
Confidence 445555555555554321111 34445555555555555544442 23344444555
Q ss_pred ccccccCCCc--cChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccc--cccCcccccceeecccc
Q 042863 436 DLSRNYKIKK--LPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQD--SGIGCLVSLRCLIISHC 511 (680)
Q Consensus 436 ~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~ 511 (680)
++++|...+. .|..+..+++|++|++++|. ...+|..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 5544432222 24444455555555555543 2234444555555555555555554442 24445555555555555
Q ss_pred cCcccchhhccCCcccceeecccccCccc-CCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCccccee
Q 042863 512 RNLEYLFDDIDQLRVLRSLLIAGCPCLIS-LPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLL 590 (680)
Q Consensus 512 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 590 (680)
......+..+..+++|+.|++++|.+.+. +|..++.+++|++|++++|.... ..+.....+++|+.|+
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-----------ISWGVFDTLHRLQLLN 503 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEE
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-----------cChhhhcccccCCEEE
Confidence 54444444555555555555555554442 44455555555555555553211 1122334456666666
Q ss_pred cccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcC---CC-CCCeEEEcCCcc
Q 042863 591 IGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPED---ML-HLKTLRIRGCPA 646 (680)
Q Consensus 591 l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~---~~-~L~~l~l~~c~~ 646 (680)
+++|......|.. +..+++|+.|++++|+ ++.+|.. ++ +|+.|++++|+.
T Consensus 504 Ls~N~l~~~~~~~-----~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 504 MSHNNLLFLDSSH-----YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCSSCCSCEEGGG-----TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCCcCCCcCHHH-----ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 6666432222322 3356666666666664 3445442 33 466666666544
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=7.7e-20 Score=186.44 Aligned_cols=271 Identities=11% Similarity=0.071 Sum_probs=192.6
Q ss_pred CCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCc
Q 042863 353 IPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHM 432 (680)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L 432 (680)
.++.++.+.+.++..... .+..+.++++|+.|++++|... ...+..+.++++|++|++++|.++.+|..+. ++|
T Consensus 52 ~~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC---EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccC---ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 345788888887765432 2345788889999999887632 2334567888999999999998888877655 789
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCcccc--ccCcccccccCcccEEEeccccccccccccCcccccceeeccc
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLEL--EELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISH 510 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 510 (680)
++|++++|......+..+..+++|++|++++|... +..|..+..+ +|+.|++++|.+..++..+. ++|+.|++++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDH 202 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCS
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCC
Confidence 99999988655544555788899999999988664 2456666666 88999999988888766543 6889999988
Q ss_pred ccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCccccee
Q 042863 511 CRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLL 590 (680)
Q Consensus 511 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 590 (680)
|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|... .++.....+++|+.|+
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS------------RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC------------BCCTTGGGCTTCCEEE
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe------------ecChhhhcCccCCEEE
Confidence 7654444567888889999999988877666667888899999999888522 2333456678899999
Q ss_pred cccccCCcccchhhhhhh--cccCCccceeeeccCCCCC-CCC----cCCCCCCeEEEcCCc
Q 042863 591 IGQVTPLLELPQWLLQES--LRNFQALEGLVIGNCPKLL-SLP----EDMLHLKTLRIRGCP 645 (680)
Q Consensus 591 l~~~~~l~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~-~l~----~~~~~L~~l~l~~c~ 645 (680)
+++|. ++.++....... ....++|+.|++++|+... .++ ..+++|+.+++++|.
T Consensus 271 l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 98884 666654322110 0125778899999988541 232 246688888888774
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=197.40 Aligned_cols=144 Identities=18% Similarity=0.135 Sum_probs=111.4
Q ss_pred eEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceec
Q 042863 358 RHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLD 436 (680)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~ 436 (680)
+.+.+.++.... +|..+. ++|+.|++++|... ...+..+.++++|++|+|++|.++.+ |..+.++++|++|+
T Consensus 3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCC---CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCccc--cccccc--ccccEEECCCCccc---ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 345556555442 332222 78999999998643 33345689999999999999999966 67899999999999
Q ss_pred cccccCCCccChhhcCCCCCcEEecCCccccc-cCcccccccCcccEEEeccccccccccccCccccc--ceeecccccC
Q 042863 437 LSRNYKIKKLPNAICELQSLQTLNLEECLELE-ELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSL--RCLIISHCRN 513 (680)
Q Consensus 437 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 513 (680)
+++|. +..+|.. .+++|++|++++|...+ .+|..++.+++|++|++++|.+... .+..+++| +.|++++|..
T Consensus 76 Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 76 LSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEEECTT
T ss_pred cCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEeecccc
Confidence 99995 4477775 89999999999998776 5789999999999999999988752 34555566 7777766654
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=1.1e-18 Score=186.69 Aligned_cols=289 Identities=16% Similarity=0.202 Sum_probs=138.1
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcce
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRY 434 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~ 434 (680)
+.++.+.+.++...... . +..+++|+.|++++|...... . +..+++|++|++++|.++.++. +.++++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADIT----P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccCh----h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 45666666665543322 1 556666666666665432211 1 5566666666666666665543 556666666
Q ss_pred eccccccCCCccCh--------------------hhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccc
Q 042863 435 LDLSRNYKIKKLPN--------------------AICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQD 494 (680)
Q Consensus 435 L~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 494 (680)
|++++|... .++. .+..+++|++|++++|... .++ .+..+++|+.|++++|.+...+
T Consensus 139 L~l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 139 LELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS-VLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred EECCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh-hhccCCCCCEEEecCCcccccc
Confidence 666665322 2221 1344555555555555322 222 3455555555555555554443
Q ss_pred cccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccc----
Q 042863 495 SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQL---- 570 (680)
Q Consensus 495 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---- 570 (680)
+ +..+++|+.|++++|. ++.+ +.+..+++|+.|++++|.+.+..+ +..+++|++|++++|...........
T Consensus 216 ~-~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 290 (466)
T 1o6v_A 216 P-LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 290 (466)
T ss_dssp G-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred c-ccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccC
Confidence 2 4445555555555543 2222 234455555555555554433222 44555555555555532211100000
Q ss_pred ------cCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc--CCCCCCeEEEc
Q 042863 571 ------EGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE--DMLHLKTLRIR 642 (680)
Q Consensus 571 ------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~--~~~~L~~l~l~ 642 (680)
....... ....+++|+.|++++|. +..++. +..+++|+.|++++|+ +..++. .+++|+.|+++
T Consensus 291 ~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~------~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 291 NLELNENQLEDIS-PISNLKNLTYLTLYFNN-ISDISP------VSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAG 361 (466)
T ss_dssp EEECCSSCCSCCG-GGGGCTTCSEEECCSSC-CSCCGG------GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECC
T ss_pred eEEcCCCcccCch-hhcCCCCCCEEECcCCc-CCCchh------hccCccCCEeECCCCc-cCCchhhccCCCCCEEeCC
Confidence 0000001 12344555555555553 333321 2355666666666663 333332 45566666666
Q ss_pred CCcccccccCCCCCCCCccccccceeEecCcccc
Q 042863 643 GCPALSDRCKPLTGEDWHKIAHVAHIKLDDEIIK 676 (680)
Q Consensus 643 ~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 676 (680)
+|.. ++.. ....+.++..+++.+..|.
T Consensus 362 ~n~l-~~~~------~~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 362 HNQI-SDLT------PLANLTRITQLGLNDQAWT 388 (466)
T ss_dssp SSCC-CBCG------GGTTCTTCCEEECCCEEEE
T ss_pred CCcc-Cccc------hhhcCCCCCEEeccCCccc
Confidence 6632 2211 1334455566665555443
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=9.4e-19 Score=185.58 Aligned_cols=280 Identities=15% Similarity=0.104 Sum_probs=194.5
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcce
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRY 434 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~ 434 (680)
..++.+.+.++..... + .+..+++|+.|++++|..... .+..+++|++|++++|.++.++ +.++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL------DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE------ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 3577888887765543 3 477888899999988764332 2778889999999999888764 788899999
Q ss_pred eccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCc
Q 042863 435 LDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNL 514 (680)
Q Consensus 435 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 514 (680)
|++++|...+ +| ++.+++|++|++++|...+ ++ ++.+++|+.|++++|...... .+..+++|+.|++++|. +
T Consensus 111 L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l 182 (457)
T 3bz5_A 111 LNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK-I 182 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC-C
T ss_pred EECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc-c
Confidence 9999885443 54 7788899999999886554 43 778888999999888543332 46778889999998875 4
Q ss_pred ccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccc
Q 042863 515 EYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQV 594 (680)
Q Consensus 515 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 594 (680)
+.++ +..+++|+.|++++|.+.+. .++.+++|+.|++++|..-. ++ ...+++|+.|++++|
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~------------ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE------------ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC------------CC--CTTCTTCSEEECCSS
T ss_pred ceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc------------cC--ccccCCCCEEEeeCC
Confidence 4465 77888999999998876543 27788999999998885221 22 456789999999998
Q ss_pred cCCcccchhhhhhhcccCC-------ccceeeeccCCCCCCCCc-CCCCCCeEEEcCCccccccc---CCCCCCCCcccc
Q 042863 595 TPLLELPQWLLQESLRNFQ-------ALEGLVIGNCPKLLSLPE-DMLHLKTLRIRGCPALSDRC---KPLTGEDWHKIA 663 (680)
Q Consensus 595 ~~l~~~~~~~~~~~l~~~~-------~L~~L~l~~~~~~~~l~~-~~~~L~~l~l~~c~~l~~~~---~~~~~~~~~~~~ 663 (680)
. ++.++.. .++.+. +|+.|++++|+.++.+|. .+++|+.|++++|+.+...- ..+...+.....
T Consensus 244 ~-l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 244 P-LTELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp C-CSCCCCT----TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred c-CCCcCHH----HCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 5 5555521 112222 456667777776666654 57899999999997543321 122222333334
Q ss_pred ccceeEecCccccc
Q 042863 664 HVAHIKLDDEIIKS 677 (680)
Q Consensus 664 ~l~~~~~~~~~~~~ 677 (680)
++..+++.++.+.+
T Consensus 319 ~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 319 KLVYLYLNNTELTE 332 (457)
T ss_dssp TCCEEECTTCCCSC
T ss_pred cCCEEECCCCcccc
Confidence 55556555555444
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=188.03 Aligned_cols=252 Identities=19% Similarity=0.203 Sum_probs=170.3
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChh-hcCCCCCc
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNA-ICELQSLQ 457 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~ 457 (680)
++|++|++++|... ......+.++++|++|++++|.++.++ ..+.++++|++|++++|... .+|.. +..+++|+
T Consensus 52 ~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCC
Confidence 47888888887632 233345778888888888888888654 46888888888888888544 44443 77888888
Q ss_pred EEecCCccccccCcc--cccccCcccEEEecccc-cccc-ccccCcccccceeecccccCcccchhhccCCcccceeecc
Q 042863 458 TLNLEECLELEELPK--DIRYLVSLRVFEVTTKQ-KSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIA 533 (680)
Q Consensus 458 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 533 (680)
+|++++|... .+|. .+..+++|+.|++++|. +... +..+..+++|+.|++++|......+..+..+++|+.|+++
T Consensus 128 ~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 8888887544 5555 67788888888888874 5554 4567788888888888877555557778888888888888
Q ss_pred cccCcccCCc-cCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccC
Q 042863 534 GCPCLISLPP-AMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNF 612 (680)
Q Consensus 534 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 612 (680)
+|.+. .++. .+..+++|++|++++|..-... ... .......+.++.+++.++. +...........+..+
T Consensus 207 ~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~-l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH-------FSE-LSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQI 276 (353)
T ss_dssp CSCST-THHHHHHHHTTTEEEEEEESCBCTTCC-------CC-------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTC
T ss_pred CCccc-cchhhhhhhcccccEEECCCCcccccc-------ccc-cccccccchhhcccccccc-ccCcchhhhHHHHhcc
Confidence 88753 3333 3445788888888887532211 000 0112234556666666653 2221111111235589
Q ss_pred CccceeeeccCCCCCCCCc----CCCCCCeEEEcCCccc
Q 042863 613 QALEGLVIGNCPKLLSLPE----DMLHLKTLRIRGCPAL 647 (680)
Q Consensus 613 ~~L~~L~l~~~~~~~~l~~----~~~~L~~l~l~~c~~l 647 (680)
++|+.|++++|. ++.+|. .+++|+.|++++|+..
T Consensus 277 ~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 277 SGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 999999999996 557765 4679999999999643
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=7.3e-20 Score=200.59 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=75.7
Q ss_pred CCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccccc-ccCcCCc
Q 042863 354 PKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKE-IGNLKHM 432 (680)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L 432 (680)
+..++.+.+.++..... .+..+.++++|++|++++|... ...+..+.++++|++|+|++|.++.+++. +.++++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 34566666666654332 1234566666777777666422 22233456666666666666666655443 6666666
Q ss_pred ceeccccccCCC-ccChhhcCCCCCcEEecCCccccccCc-ccccccCcccEEEeccccccc
Q 042863 433 RYLDLSRNYKIK-KLPNAICELQSLQTLNLEECLELEELP-KDIRYLVSLRVFEVTTKQKSL 492 (680)
Q Consensus 433 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 492 (680)
++|++++|.... ..|..++.+++|++|++++|...+.+| ..+..+++|++|++++|.+..
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 666666664433 334455666666666666655444444 345555555555555555543
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.4e-19 Score=198.38 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=79.9
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccc--ccccccCcCCc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEA--LPKEIGNLKHM 432 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~l~~L 432 (680)
.+++.+.+.++..... .+..+.++++|++|++++|... ...+..+.++++|++|++++|.++. .|..+.++++|
T Consensus 50 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 50 ANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCC---SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccC---ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 4677777777665432 2345777888888888877532 2333457788888888888888873 45667788888
Q ss_pred ceeccccccCCCccC-hhhcCCCCCcEEecCCccccccCcccccc
Q 042863 433 RYLDLSRNYKIKKLP-NAICELQSLQTLNLEECLELEELPKDIRY 476 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 476 (680)
++|++++|...+.+| ..+..+++|++|++++|...+..|..++.
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 888888876555555 35677777777777777665555554443
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=3.2e-19 Score=197.98 Aligned_cols=295 Identities=16% Similarity=0.100 Sum_probs=195.2
Q ss_pred ceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcc------------------------------cchHHHHHhhcc
Q 042863 356 RVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEK------------------------------VSQSFVRSCISK 405 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------------~~~~~~~~~~~~ 405 (680)
.++.+.+.++.......+..+.+++.|+.+.+..+... ......+. +..
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~ 283 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHC 283 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-ccc
Confidence 68889999887776777888889999888877432110 01112222 778
Q ss_pred CcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCcccccc----------------
Q 042863 406 SQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEE---------------- 469 (680)
Q Consensus 406 ~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------- 469 (680)
+++|+.|+++++.+..+| .+..+++|+.|++++|.. +.+|. + .+++|++|++++|.....
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred CCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence 899999999999999888 788899999999999865 66663 3 555555555555532222
Q ss_pred --------CcccccccCcccEEEeccccccccccccCcccccceeecccccCcccch-hhccCCcccceeecccccCccc
Q 042863 470 --------LPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLF-DDIDQLRVLRSLLIAGCPCLIS 540 (680)
Q Consensus 470 --------~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~ 540 (680)
+|..+..+++|+.|++++|.+...+..+..+++|+.|++++|...+..+ ..+..+++|+.|++++|.+.+.
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 2444555666666666666665555556666667777776665444333 3566677777777777776666
Q ss_pred CCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeee
Q 042863 541 LPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVI 620 (680)
Q Consensus 541 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l 620 (680)
.|..+..+++|++|++++|.... ...+.....+++|+.|++++|......|. .+..+++|+.|++
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L 504 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKD----------NTLSNVFANTTNLTFLDLSKCQLEQISWG-----VFDTLHRLQLLNM 504 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEEC
T ss_pred chhhhcCCCCCCEEECCCCcCCC----------cchHHhhccCCCCCEEECCCCcCCccChh-----hhcccccCCEEEC
Confidence 66667777777777777764211 11344566788999999999854333343 3458899999999
Q ss_pred ccCCCCCCCCc---CCCCCCeEEEcCCcccccccCCCCCCCCcccc-ccceeEecCcccc
Q 042863 621 GNCPKLLSLPE---DMLHLKTLRIRGCPALSDRCKPLTGEDWHKIA-HVAHIKLDDEIIK 676 (680)
Q Consensus 621 ~~~~~~~~l~~---~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 676 (680)
++|+.....|. .+++|+.|++++|. ++. ... ....+. ++..+++.++-|.
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~----~p~-~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNR-IET----SKG-ILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSC-CCC----EES-CGGGSCTTCCEEECCSCCCC
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCc-Ccc----cCH-hHhhhcccCcEEEccCCCcc
Confidence 99975444344 46789999999995 332 111 133443 5777887776654
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=1.4e-18 Score=185.82 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=163.7
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHH----------------HHhhccCcceeEEEeCCCC
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFV----------------RSCISKSQFLRVLNLSGSA 418 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~L~~L~L~~~~ 418 (680)
+.++.+.+.++...... . +..+++|+.|++++|......... ...+..+++|++|++++|.
T Consensus 112 ~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDID--P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCCCh--H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 46777777766644432 1 677788888888776532211100 0114455556666666665
Q ss_pred cccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccC
Q 042863 419 IEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIG 498 (680)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~ 498 (680)
++.++ .+..+++|++|++++|...+..| ++.+++|++|++++|... .+ ..+..+++|+.|++++|.+...+. +.
T Consensus 189 l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~ 262 (466)
T 1o6v_A 189 VSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP-LS 262 (466)
T ss_dssp CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cc-hhhhcCCCCCEEECCCCccccchh-hh
Confidence 55443 25556666666666664333222 455666666666666433 23 245666777777777776666543 66
Q ss_pred cccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCc
Q 042863 499 CLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQA 578 (680)
Q Consensus 499 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 578 (680)
.+++|+.|++++|. ++.+++ +..+++|+.|++++|.+.+. +. +..+++|+.|++++|.... ..
T Consensus 263 ~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~------------~~- 325 (466)
T 1o6v_A 263 GLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISD------------IS- 325 (466)
T ss_dssp TCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSC------------CG-
T ss_pred cCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCC------------ch-
Confidence 67777777777765 333443 66677777777777765443 33 6677788888888774222 11
Q ss_pred ccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCC-cCCCCCCeEEEcCCccc
Q 042863 579 SNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP-EDMLHLKTLRIRGCPAL 647 (680)
Q Consensus 579 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~-~~~~~L~~l~l~~c~~l 647 (680)
....+++|+.|++++|. +..++ .+..+++|+.|++++|+.....| ..+++|+.|++++|+..
T Consensus 326 ~~~~l~~L~~L~l~~n~-l~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNNK-VSDVS------SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GGGGCTTCCEEECCSSC-CCCCG------GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEE
T ss_pred hhccCccCCEeECCCCc-cCCch------hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCccc
Confidence 14578999999999995 55653 35689999999999997544443 36789999999999644
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=5e-19 Score=203.18 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=179.1
Q ss_pred CCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccc-cccc--ccCcC
Q 042863 354 PKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEA-LPKE--IGNLK 430 (680)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~--~~~l~ 430 (680)
...++.+.+.++.....-.+..+.++++|++|++++|... ...+..+.++++|++|+|++|.++. ++.. +.+++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 3568889998875433222566889999999999988632 3345578899999999999999984 5554 88999
Q ss_pred CcceeccccccCCCccC-hhhcCCCCCcEEecCCccccccCccccccc--CcccEEEecccccccc-ccccCcccc----
Q 042863 431 HMRYLDLSRNYKIKKLP-NAICELQSLQTLNLEECLELEELPKDIRYL--VSLRVFEVTTKQKSLQ-DSGIGCLVS---- 502 (680)
Q Consensus 431 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~-~~~l~~l~~---- 502 (680)
+|++|++++|...+..+ ..++.+++|++|++++|.+....+..+..+ ++|+.|+++.|.+... +..+..+++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 99999999997665443 568899999999999998777777777766 7888888888877654 344444443
Q ss_pred --cceeecccccCcccchhh------------------------------------ccC--CcccceeecccccCcccCC
Q 042863 503 --LRCLIISHCRNLEYLFDD------------------------------------IDQ--LRVLRSLLIAGCPCLISLP 542 (680)
Q Consensus 503 --L~~L~l~~~~~~~~~~~~------------------------------------~~~--l~~L~~L~l~~~~~~~~~~ 542 (680)
|+.|++++|.....++.. +.. .++|+.|++++|.+.+..+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 777887776422221111 111 2567777777776666566
Q ss_pred ccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeecc
Q 042863 543 PAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGN 622 (680)
Q Consensus 543 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~ 622 (680)
..+..+++|++|++++|..-. ..+.....+++|+.|++++|. +..++. ..+..+++|+.|++++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~-----------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINK-----------IADEAFYGLDNLQVLNLSYNL-LGELYS----SNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCE-----------ECTTTTTTCSSCCEEEEESCC-CSCCCS----CSCSSCTTCCEEECCS
T ss_pred hhhhcCCCCCEEECCCCcCCC-----------CChHHhcCCCCCCEEECCCCC-CCccCH----HHhcCCCCCCEEECCC
Confidence 667777777777777764222 112233455666666666664 333311 1233566666666666
Q ss_pred CCCCCCCCc----CCCCCCeEEEcCCc
Q 042863 623 CPKLLSLPE----DMLHLKTLRIRGCP 645 (680)
Q Consensus 623 ~~~~~~l~~----~~~~L~~l~l~~c~ 645 (680)
|. +..++. .+++|+.|++++|.
T Consensus 348 N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 348 NH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CC-CCccChhhhcCCCCCCEEECCCCC
Confidence 64 333332 35566666666653
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=9.6e-20 Score=183.52 Aligned_cols=222 Identities=18% Similarity=0.143 Sum_probs=130.1
Q ss_pred cceeEEEeCCCCccccccc-ccCcCCcceeccccccCCC--ccChhhcCCCCCcEEecCCccccccCcccccccCcccEE
Q 042863 407 QFLRVLNLSGSAIEALPKE-IGNLKHMRYLDLSRNYKIK--KLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVF 483 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 483 (680)
++|++|++++|.++.+|.. +.++++|++|++++|.... ..+..+..+++|++|++++|.. ..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChhhcCCCCCCCEE
Confidence 4566666766666666543 4566667777776664331 1244455666677777766643 3455556666667777
Q ss_pred Eeccccccccc--cccCcccccceeecccccCcccchhhccCCcccceeecccccCcc-cCCccCCCCCCcCeEeecCCC
Q 042863 484 EVTTKQKSLQD--SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLI-SLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 484 ~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 560 (680)
++++|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 77666666553 255666667777776665444445556666677777777666544 355666666777777776664
Q ss_pred CccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CC-CCC
Q 042863 561 SLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DM-LHL 636 (680)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~-~~L 636 (680)
... ..+.....+++|+.|++++|. ++.++.. .+..+++|+.|++++|+.....+. .+ ++|
T Consensus 187 l~~-----------~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 187 LEQ-----------LSPTAFNSLSSLQVLNMSHNN-FFSLDTF----PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CCE-----------ECTTTTTTCTTCCEEECTTSC-CSBCCSG----GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred cCC-----------cCHHHhcCCCCCCEEECCCCc-cCccChh----hccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 211 112233455667777776664 3444321 233667777777777754443332 23 366
Q ss_pred CeEEEcCCc
Q 042863 637 KTLRIRGCP 645 (680)
Q Consensus 637 ~~l~l~~c~ 645 (680)
+.|++++|+
T Consensus 251 ~~L~L~~N~ 259 (306)
T 2z66_A 251 AFLNLTQND 259 (306)
T ss_dssp CEEECTTCC
T ss_pred CEEEccCCC
Confidence 777777664
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=4.4e-19 Score=178.66 Aligned_cols=227 Identities=20% Similarity=0.176 Sum_probs=182.6
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc---cccccCcCCcceeccccccCCCccChhhcCCCCC
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL---PKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (680)
++|+.|++++|... ......+.++++|++|++++|.++.. +..+.++++|++|++++|. ...+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 68999999998643 33345578999999999999999854 5667789999999999995 45677778899999
Q ss_pred cEEecCCccccccCc-ccccccCcccEEEecccccccc-ccccCcccccceeecccccCcc-cchhhccCCcccceeecc
Q 042863 457 QTLNLEECLELEELP-KDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLE-YLFDDIDQLRVLRSLLIA 533 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~ 533 (680)
++|++++|......+ ..+..+++|++|++++|.+... +..+..+++|+.|++++|...+ .+|..+..+++|+.|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 999999986554333 4788999999999999998866 5567889999999999987554 467888999999999999
Q ss_pred cccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccC-
Q 042863 534 GCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNF- 612 (680)
Q Consensus 534 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~- 612 (680)
+|.+.+..|..+..+++|++|++++|..... .......+++|+.|++++|......+.. +..+
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~ 247 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-----------DTFPYKCLNSLQVLDYSLNHIMTSKKQE-----LQHFP 247 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBC-----------CSGGGTTCTTCCEEECTTSCCCBCSSSS-----CCCCC
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCcc-----------ChhhccCcccCCEeECCCCCCcccCHHH-----HHhhh
Confidence 9988777788899999999999999863321 1223466899999999999654444433 3466
Q ss_pred CccceeeeccCCCC
Q 042863 613 QALEGLVIGNCPKL 626 (680)
Q Consensus 613 ~~L~~L~l~~~~~~ 626 (680)
++|+.|++++|+..
T Consensus 248 ~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 248 SSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTCCEE
T ss_pred ccCCEEEccCCCee
Confidence 49999999999853
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=9e-19 Score=192.09 Aligned_cols=144 Identities=20% Similarity=0.217 Sum_probs=110.7
Q ss_pred eEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceec
Q 042863 358 RHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLD 436 (680)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~ 436 (680)
+.+.+.++.... +|..+ .++|+.|++++|... ...+..+.++++|++|+|++|.++.+ |..+.++++|++|+
T Consensus 34 ~~l~ls~~~L~~--ip~~~--~~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRNLTH--VPKDL--PPRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSCCCS--CCTTS--CTTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCCCcc--CCCCC--CCCcCEEECCCCCcc---ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 567777666543 33322 278999999998643 33345789999999999999999966 56799999999999
Q ss_pred cccccCCCccChhhcCCCCCcEEecCCccccc-cCcccccccCcccEEEeccccccccccccCccccc--ceeecccccC
Q 042863 437 LSRNYKIKKLPNAICELQSLQTLNLEECLELE-ELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSL--RCLIISHCRN 513 (680)
Q Consensus 437 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 513 (680)
+++|. +..+|.. .+++|++|++++|...+ .+|..++++++|++|++++|.+... .+..+++| +.|++++|..
T Consensus 107 Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 99996 4577875 89999999999997665 4568899999999999999988753 33444444 7777666543
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.2e-18 Score=185.69 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=69.0
Q ss_pred hhccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 402 CISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
.+.++++|++|+|++|.++.++ ..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 3444555555555555554332 334445555555555543332222234445555555555543332222334444555
Q ss_pred cEEEecccc-ccccc-cccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecC
Q 042863 481 RVFEVTTKQ-KSLQD-SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVE 558 (680)
Q Consensus 481 ~~L~l~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 558 (680)
+.|++++|+ +..++ ..+..+++|+.|++++|. ++.+| .+..+++|+.|++++|.+.+..|..+.++++|+.|++++
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 555554422 22221 234444455555554443 22232 234444555555555544444444444455555555544
Q ss_pred C
Q 042863 559 C 559 (680)
Q Consensus 559 ~ 559 (680)
|
T Consensus 252 n 252 (452)
T 3zyi_A 252 S 252 (452)
T ss_dssp S
T ss_pred C
Confidence 4
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=183.49 Aligned_cols=224 Identities=18% Similarity=0.200 Sum_probs=106.7
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
++++.|++++|... ......+.++++|++|+|++|.++.++ ..+.++++|++|++++|.+....+..+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ---IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCC---EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCC---eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 34555555554421 111233555555555555555555433 34555555555555555333222334555555555
Q ss_pred EecCCccccccCcccccccCcccEEEecccc-cccc-ccccCcccccceeecccccCcccchhhccCCcccceeeccccc
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQ-KSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 536 (680)
|++++|.+....+..+..+++|+.|++++|+ +..+ ...+..+++|+.|++++|. ++.+| .+..+++|+.|++++|.
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEECTTSC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEECCCCc
Confidence 5555554333333345555555555555532 2222 2234455555555555543 33333 24455555555555555
Q ss_pred CcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccc
Q 042863 537 CLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALE 616 (680)
Q Consensus 537 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~ 616 (680)
+.+..+..+..+++|++|++++|.... ..+..+..+++|+.|++++|. ++.++.. .+..+++|+
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~ 282 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQV-----------IERNAFDNLQSLVEINLAHNN-LTLLPHD----LFTPLHHLE 282 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCE-----------ECTTSSTTCTTCCEEECTTSC-CCCCCTT----TTSSCTTCC
T ss_pred cCccChhhhccCccCCEEECCCCceeE-----------EChhhhcCCCCCCEEECCCCC-CCccChh----HhccccCCC
Confidence 444444555555555555555553211 111223344555555555552 3344321 223455555
Q ss_pred eeeeccCC
Q 042863 617 GLVIGNCP 624 (680)
Q Consensus 617 ~L~l~~~~ 624 (680)
.|++++|+
T Consensus 283 ~L~L~~Np 290 (440)
T 3zyj_A 283 RIHLHHNP 290 (440)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 55555554
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=193.99 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=121.0
Q ss_pred CCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccc-ccccCc
Q 042863 351 QSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALP-KEIGNL 429 (680)
Q Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l 429 (680)
...+..++.+.+.++...... +..|.++++|++|++++|... ...+..+.++++|++|+|++|.++.++ ..+.++
T Consensus 24 ~~l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 24 DNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSSCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 345667899999888755432 335788999999999988632 233456889999999999999998665 578899
Q ss_pred CCcceeccccccCCCccChhhcCCCCCcEEecCCccccc-cCcccccccCcccEEEecccccccc-ccccCccccc----
Q 042863 430 KHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELE-ELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSL---- 503 (680)
Q Consensus 430 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L---- 503 (680)
++|++|++++|......+..++.+++|++|++++|.... .+|..++++++|++|++++|.+... +..+..+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 999999999985444333358889999999999987665 5788899999999999999988766 3455666666
Q ss_pred ceeeccccc
Q 042863 504 RCLIISHCR 512 (680)
Q Consensus 504 ~~L~l~~~~ 512 (680)
+.|++++|.
T Consensus 180 ~~L~l~~n~ 188 (570)
T 2z63_A 180 LSLDLSLNP 188 (570)
T ss_dssp CEEECTTCC
T ss_pred hhcccCCCC
Confidence 666766654
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=196.00 Aligned_cols=265 Identities=18% Similarity=0.118 Sum_probs=204.7
Q ss_pred eeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceec
Q 042863 357 VRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLD 436 (680)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~ 436 (680)
++.+.+..........+..+..+++|++|++++|... .++..+..+ +|+.|++++|.+..+|. ..+++|+.|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~----~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~ 331 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE----RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLT 331 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC----SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch----hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEe
Confidence 4555555543223344566888999999999987532 233446677 99999999999997776 5789999999
Q ss_pred cccccCCCccChhhcCCCCCcEEecCCccccccC--cccccccCcccEEEeccccccccccccCcccccceeecccccCc
Q 042863 437 LSRNYKIKKLPNAICELQSLQTLNLEECLELEEL--PKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNL 514 (680)
Q Consensus 437 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 514 (680)
+++|......+. ..+++|++|++++|...... |..+..+++|+.|++++|.+...+..+..+++|+.|++++|...
T Consensus 332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence 999976555554 67999999999998655432 67788999999999999999888766889999999999998754
Q ss_pred ccch-hhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceeccc
Q 042863 515 EYLF-DDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQ 593 (680)
Q Consensus 515 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 593 (680)
...+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.... ..++.....+++|+.|++++
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----------NFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTT
T ss_pred cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc----------ccchhhhhcccCCCEEECCC
Confidence 4333 367889999999999999888888889999999999999985321 12345567789999999999
Q ss_pred ccCCccc-chhhhhhhcccCCccceeeeccCCCCCCCC----cCCCCCCeEEEcCCccc
Q 042863 594 VTPLLEL-PQWLLQESLRNFQALEGLVIGNCPKLLSLP----EDMLHLKTLRIRGCPAL 647 (680)
Q Consensus 594 ~~~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~----~~~~~L~~l~l~~c~~l 647 (680)
|. ++.+ |.. +..+++|+.|++++|. ++.++ ..+++|+.|++++|+..
T Consensus 480 n~-l~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 480 CQ-LEQLSPTA-----FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp SC-CCEECTTT-----TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-cccCChhh-----hhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence 96 4444 543 4489999999999996 44444 24679999999998643
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=185.53 Aligned_cols=230 Identities=17% Similarity=0.117 Sum_probs=189.1
Q ss_pred CCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCc
Q 042863 351 QSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNL 429 (680)
Q Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l 429 (680)
...+..++.+.+.++.+.... +..|.++++|+.|++++|... ...+..+.++++|++|+|++|.++.++. .+.++
T Consensus 60 ~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 60 DGISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp SCCCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSCCC---EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCcCC---ccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 445577899999988765433 345889999999999998643 2334578899999999999999998876 68899
Q ss_pred CCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcc-cccccCcccEEEeccccccccccccCcccccceeec
Q 042863 430 KHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPK-DIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLII 508 (680)
Q Consensus 430 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 508 (680)
++|++|++++|.+....+..+..+++|++|++++|+....++. .+..+++|+.|++++|.+..++ .+..+++|+.|++
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDL 214 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEEC
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEEC
Confidence 9999999999976555555788999999999999877777665 5889999999999999998775 5788999999999
Q ss_pred ccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccc
Q 042863 509 SHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRK 588 (680)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 588 (680)
++|......+..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.... ........+++|+.
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-----------LPHDLFTPLHHLER 283 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-----------CCTTTTSSCTTCCE
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-----------cChhHhccccCCCE
Confidence 9987555557788999999999999999887778889999999999999985322 11234466789999
Q ss_pred eecccccC
Q 042863 589 LLIGQVTP 596 (680)
Q Consensus 589 L~l~~~~~ 596 (680)
|++++|+.
T Consensus 284 L~L~~Np~ 291 (440)
T 3zyj_A 284 IHLHHNPW 291 (440)
T ss_dssp EECCSSCE
T ss_pred EEcCCCCc
Confidence 99999873
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.2e-18 Score=185.69 Aligned_cols=229 Identities=20% Similarity=0.150 Sum_probs=189.1
Q ss_pred CCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccccc-ccCc
Q 042863 351 QSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKE-IGNL 429 (680)
Q Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l 429 (680)
...+..++.+.+.++.+.... +..|.++++|+.|++++|... ...+..+.++++|++|+|++|.++.++.. +.++
T Consensus 71 ~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 71 QGIPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp SCCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCCCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 345578999999988765432 456889999999999998643 33345688999999999999999987754 8889
Q ss_pred CCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcc-cccccCcccEEEeccccccccccccCcccccceeec
Q 042863 430 KHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPK-DIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLII 508 (680)
Q Consensus 430 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 508 (680)
++|++|++++|.+....+..+..+++|+.|++++|+.++.++. .+..+++|+.|++++|.+...+ .+..+++|+.|++
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEM 225 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEEC
Confidence 9999999999976554455788999999999999877777775 4789999999999999998874 5788999999999
Q ss_pred ccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccc
Q 042863 509 SHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRK 588 (680)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 588 (680)
++|...+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.... ........+++|+.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-----------LPHDLFTPLRYLVE 294 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-----------CCTTSSTTCTTCCE
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-----------cChHHhccccCCCE
Confidence 9988666667889999999999999999887778889999999999999985322 11234456789999
Q ss_pred eeccccc
Q 042863 589 LLIGQVT 595 (680)
Q Consensus 589 L~l~~~~ 595 (680)
|++++|+
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9999986
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.6e-18 Score=193.24 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=140.7
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
+++++|++++|... ...+..+.++++|++|+|++|.++.+ |..+.++++|++|++++|......+..++.+++|++
T Consensus 25 ~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 68999999998633 23345688999999999999999965 567889999999999999654433346899999999
Q ss_pred EecCCccccccCcccccccCcccEEEecccccccc-ccccCcccccceeecccccCcccchhhcc--CCcccceeecccc
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDID--QLRVLRSLLIAGC 535 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~ 535 (680)
|++++|...+..|..++.+++|++|++++|.+... +..+.++++|+.|++++|...+..+..+. .+++|+.|++++|
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 99999977655557899999999999999998876 55678899999999999875444444443 5689999999999
Q ss_pred cCcccCCccCCCCCCcCeEeecCC
Q 042863 536 PCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 536 ~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
.+.+..|..+..+++|+.|++.++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTC
T ss_pred cccccChhhhhhhhhhhhhhcccc
Confidence 887777776776666665555444
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.6e-18 Score=168.11 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=159.2
Q ss_pred CcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccC-cccccccCcccEE
Q 042863 406 SQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEEL-PKDIRYLVSLRVF 483 (680)
Q Consensus 406 ~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L 483 (680)
.++|++|++++|.++.++ ..+.++++|++|++++|......|..+..+++|++|++++|.....+ |..+..+++|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 568999999999999766 46888999999999998666666777888999999999998745544 6778889999999
Q ss_pred Eecccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCc
Q 042863 484 EVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESL 562 (680)
Q Consensus 484 ~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 562 (680)
++++|.+... +..+..+++|+.|++++|......+..++.+++|+.|++++|.+....+..+..+++|++|++++|...
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 9999988877 556788899999999987644333345788899999999998776555556888999999999988532
Q ss_pred cccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCC
Q 042863 563 SLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKL 626 (680)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 626 (680)
. ..+.....+++|+.|++++|. ++.++.. .+..+++|+.|++++|+..
T Consensus 191 ~-----------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 H-----------VHPHAFRDLGRLMTLYLFANN-LSALPTE----ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp E-----------ECTTTTTTCTTCCEEECCSSC-CSCCCHH----HHTTCTTCCEEECCSSCEE
T ss_pred c-----------cCHhHccCcccccEeeCCCCc-CCcCCHH----HcccCcccCEEeccCCCcc
Confidence 2 113345567889999999884 5555532 2447889999999998753
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.9e-18 Score=169.02 Aligned_cols=204 Identities=20% Similarity=0.208 Sum_probs=159.7
Q ss_pred cCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceeccccccCCCcc-ChhhcCCCCC
Q 042863 379 LGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLDLSRNYKIKKL-PNAICELQSL 456 (680)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L 456 (680)
.++|+.|++++|... ......+..+++|++|++++|.++.+ +..+.++++|++|++++|.....+ |..+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 467999999887633 23334578899999999999998865 667888999999999998634444 6678889999
Q ss_pred cEEecCCccccccCcccccccCcccEEEecccccccccc-ccCcccccceeecccccCcccchh-hccCCcccceeeccc
Q 042863 457 QTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDS-GIGCLVSLRCLIISHCRNLEYLFD-DIDQLRVLRSLLIAG 534 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 534 (680)
++|++++|......|..+..+++|++|++++|.+...+. .+..+++|+.|++++|. ++.++. .+..+++|+.|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 999999987776667778889999999999998887754 47788999999999876 445544 578889999999999
Q ss_pred ccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCC
Q 042863 535 CPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPL 597 (680)
Q Consensus 535 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 597 (680)
|.+.+..|..+..+++|++|++++|.... ........+++|+.|++++|+..
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSA-----------LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSC-----------CCHHHHTTCTTCCEEECCSSCEE
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCc-----------CCHHHcccCcccCEEeccCCCcc
Confidence 98877778888899999999999885322 11223566788999999988643
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=182.89 Aligned_cols=260 Identities=15% Similarity=0.125 Sum_probs=198.6
Q ss_pred CCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccccc-ccCcC
Q 042863 352 SIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKE-IGNLK 430 (680)
Q Consensus 352 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l~ 430 (680)
..++.++.+.+.++...... +..+.++++|+.|++++|... ...+..+.++++|++|++++|.++.++.. +.+++
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TCCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred cccccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 34457999999988765422 335789999999999988643 23345688999999999999999988876 88999
Q ss_pred CcceeccccccCCCccCh--hhcCCCCCcEEecCCccccccC-cccccccCcccEEEecccccccc-ccccCccccccee
Q 042863 431 HMRYLDLSRNYKIKKLPN--AICELQSLQTLNLEECLELEEL-PKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCL 506 (680)
Q Consensus 431 ~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L 506 (680)
+|++|++++|... .+|. .+..+++|++|++++|...+.+ +..+..+++|+.|++++|.+... +..+..+++|+.|
T Consensus 125 ~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 125 SLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp TCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred cCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 9999999999544 5554 6889999999999998645544 56789999999999999999877 7788999999999
Q ss_pred ecccccCcccchhh-ccCCcccceeecccccCcccCCcc---CCCCCCcCeEeecCCCCccccccccccCCCCcCcccCC
Q 042863 507 IISHCRNLEYLFDD-IDQLRVLRSLLIAGCPCLISLPPA---MRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTT 582 (680)
Q Consensus 507 ~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (680)
++++|. ++.++.. +..+++|+.|++++|.+.+..+.. ...++.++.+++.++.... .. ...++.....
T Consensus 204 ~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~-~~------l~~l~~~l~~ 275 (353)
T 2z80_A 204 ILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-ES------LFQVMKLLNQ 275 (353)
T ss_dssp EEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH-HH------HHHHHHHHHT
T ss_pred cCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC-cc------hhhhHHHHhc
Confidence 999987 4556554 345899999999999876543332 2356778888888874221 10 1112334567
Q ss_pred CCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCC
Q 042863 583 RPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSL 629 (680)
Q Consensus 583 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 629 (680)
+++|+.|++++|. ++.+|..+ +..+++|+.|++++|+.....
T Consensus 276 l~~L~~L~Ls~N~-l~~i~~~~----~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 276 ISGLLELEFSRNQ-LKSVPDGI----FDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CTTCCEEECCSSC-CCCCCTTT----TTTCTTCCEEECCSSCBCCCH
T ss_pred ccCCCEEECCCCC-CCccCHHH----HhcCCCCCEEEeeCCCccCcC
Confidence 8899999999994 67888643 358999999999999865443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=4.4e-18 Score=171.94 Aligned_cols=244 Identities=16% Similarity=0.084 Sum_probs=160.3
Q ss_pred HHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCC
Q 042863 374 RFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICEL 453 (680)
Q Consensus 374 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 453 (680)
..+..+++|+.|++++|... ...+..+..+++|++|+|++|.++..++ +..+++|++|++++|.. ..++ .+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~~l~----~~ 98 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VG 98 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-EEEE----EC
T ss_pred HHhccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-cccc----CC
Confidence 45556677888888877532 2333457788888888888888875554 77788888888888743 3333 34
Q ss_pred CCCcEEecCCccccccCcccccccCcccEEEecccccccc-ccccCcccccceeecccccCcccchhhc-cCCcccceee
Q 042863 454 QSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDI-DQLRVLRSLL 531 (680)
Q Consensus 454 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~ 531 (680)
++|++|++++|......+. .+++|+.|++++|.+... +..+..+++|+.|++++|......+..+ ..+++|+.|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 7788888888755443222 356788888888887776 3466777888888888876544344444 3577888888
Q ss_pred cccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhccc
Q 042863 532 IAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRN 611 (680)
Q Consensus 532 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 611 (680)
+++|.+... +. ...+++|++|++++|..-. ++.....+++|+.|++++|. ++.+|.. +..
T Consensus 176 L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~L~~L~L~~N~-l~~l~~~-----~~~ 235 (317)
T 3o53_A 176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNK-LVLIEKA-----LRF 235 (317)
T ss_dssp CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSC-CCEECTT-----CCC
T ss_pred CCCCcCccc-cc-ccccccCCEEECCCCcCCc------------chhhhcccCcccEEECcCCc-ccchhhH-----hhc
Confidence 888775433 33 3347788888888875322 22234556788888888874 5666643 347
Q ss_pred CCccceeeeccCCCC-CCCCc---CCCCCCeEEEcCCccccc
Q 042863 612 FQALEGLVIGNCPKL-LSLPE---DMLHLKTLRIRGCPALSD 649 (680)
Q Consensus 612 ~~~L~~L~l~~~~~~-~~l~~---~~~~L~~l~l~~c~~l~~ 649 (680)
+++|+.|++++|+.. ..++. .+++|+.+++.+|..++.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 788888888888754 23332 455667777766655544
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=4.8e-18 Score=181.83 Aligned_cols=214 Identities=16% Similarity=0.095 Sum_probs=121.3
Q ss_pred CccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEe
Q 042863 381 RVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLN 460 (680)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 460 (680)
+|+.|++++|... ...+..+..+++|++|+|++|.++..++ +..+++|++|++++|. +..+|. .++|++|+
T Consensus 35 ~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEE
T ss_pred CccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEE
Confidence 6667777666432 1223446666677777777776664443 6666677777776663 222222 25666777
Q ss_pred cCCccccccCcccccccCcccEEEecccccccc-ccccCcccccceeecccccCcccchhhcc-CCcccceeecccccCc
Q 042863 461 LEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDID-QLRVLRSLLIAGCPCL 538 (680)
Q Consensus 461 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~ 538 (680)
+++|.+....+. .+++|+.|++++|.++.. +..+..+++|+.|++++|...+..|..+. .+++|+.|++++|.+.
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 766654433222 345666677766666655 44556666677777766654444454443 5666677777666654
Q ss_pred ccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCcccee
Q 042863 539 ISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGL 618 (680)
Q Consensus 539 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L 618 (680)
+. +. ...+++|+.|++++|..-. ++.....+++|+.|++++|. +..+|.. +..+++|+.|
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~------------~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-----l~~l~~L~~L 242 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNK-LVLIEKA-----LRFSQNLEHF 242 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSC-CCEECTT-----CCCCTTCCEE
T ss_pred cc-cc-cccCCCCCEEECCCCCCCC------------CCHhHcCCCCccEEEecCCc-Ccccchh-----hccCCCCCEE
Confidence 33 22 2346666666666664211 11223445666666666663 4455543 3356666666
Q ss_pred eeccCCCC
Q 042863 619 VIGNCPKL 626 (680)
Q Consensus 619 ~l~~~~~~ 626 (680)
++++|+..
T Consensus 243 ~l~~N~l~ 250 (487)
T 3oja_A 243 DLRGNGFH 250 (487)
T ss_dssp ECTTCCBC
T ss_pred EcCCCCCc
Confidence 66666644
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=9.2e-20 Score=195.19 Aligned_cols=264 Identities=16% Similarity=0.078 Sum_probs=171.5
Q ss_pred CCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCccc-chHHHHHhhccCcceeEEEeCCCCccc-cccc-ccCcC
Q 042863 354 PKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKV-SQSFVRSCISKSQFLRVLNLSGSAIEA-LPKE-IGNLK 430 (680)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~-~~~l~ 430 (680)
++.++++.+.++......+...+..+++|++|++++|.... ....+...+..+++|++|+|++|.++. .+.. ...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45678889988888777778888899999999999886432 123456678888999999999998873 2222 22344
Q ss_pred ----CcceeccccccCCC----ccChhhcCCCCCcEEecCCccccccCccccc-----ccCcccEEEecccccccc----
Q 042863 431 ----HMRYLDLSRNYKIK----KLPNAICELQSLQTLNLEECLELEELPKDIR-----YLVSLRVFEVTTKQKSLQ---- 493 (680)
Q Consensus 431 ----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~---- 493 (680)
+|++|++++|.... .++..+..+++|++|++++|......+..+. ..++|++|++++|.++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999986553 4577788899999999998875443333222 245799999998887753
Q ss_pred -ccccCcccccceeecccccCcccchhhcc-----CCcccceeecccccCccc----CCccCCCCCCcCeEeecCCCCcc
Q 042863 494 -DSGIGCLVSLRCLIISHCRNLEYLFDDID-----QLRVLRSLLIAGCPCLIS----LPPAMRYLSSLETLMFVECESLS 563 (680)
Q Consensus 494 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 563 (680)
+..+..+++|+.|++++|......+..+. .+++|+.|++++|.+... ++..+..+++|++|++++|. +.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CC
Confidence 34456678889999988774332222222 356888888888876542 56666778888888888874 22
Q ss_pred ccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCC
Q 042863 564 LNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCP 624 (680)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 624 (680)
...... ........+++|+.|++++|. ++..........+..+++|+.|++++|.
T Consensus 241 ~~~~~~-----l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 241 DVGMAE-----LCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHH-----HHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred hHHHHH-----HHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 110000 001112245677777777763 4442211111234456777777777664
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=1.5e-19 Score=182.40 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=35.8
Q ss_pred cCCcceeccccccCCCccChhh--cCCCCCcEEecCCccccccCccccccc-----CcccEEEeccccccccc-cccCcc
Q 042863 429 LKHMRYLDLSRNYKIKKLPNAI--CELQSLQTLNLEECLELEELPKDIRYL-----VSLRVFEVTTKQKSLQD-SGIGCL 500 (680)
Q Consensus 429 l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~-~~l~~l 500 (680)
+++|++|++++|...+.+|..+ ..+++|++|++++|...+. |..++.+ ++|++|++++|.+...+ ..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4444444444444333344333 3444444444444433222 4333333 44444444444444432 334444
Q ss_pred cccceeeccccc
Q 042863 501 VSLRCLIISHCR 512 (680)
Q Consensus 501 ~~L~~L~l~~~~ 512 (680)
++|+.|++++|.
T Consensus 173 ~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 173 PALSTLDLSDNP 184 (312)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 444444444443
No 63
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=3.7e-19 Score=181.96 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=65.7
Q ss_pred cceeEEEeCCCCcccccccccCcCCcceeccccccCCCc-cChhhcCCCCCcEEecCCccccccCcccccccCcccEEEe
Q 042863 407 QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKK-LPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEV 485 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 485 (680)
++++.|++++|.+...+..+.++++|++|++++|..... ++..+..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 344444444444443333334444444444444432222 3333444444444444444433334444444444444444
Q ss_pred ccc-cccc--cccccCcccccceeecccccCccc--chhhccCCc-ccceeeccccc--Cc-ccCCccCCCCCCcCeEee
Q 042863 486 TTK-QKSL--QDSGIGCLVSLRCLIISHCRNLEY--LFDDIDQLR-VLRSLLIAGCP--CL-ISLPPAMRYLSSLETLMF 556 (680)
Q Consensus 486 ~~~-~~~~--~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l 556 (680)
++| .++. .+..+..+++|+.|++++|..++. ++..+..++ +|+.|++++|. +. ..++..+.++++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 444 2332 222233444445555444422221 333344444 45555554442 11 223333444445555555
Q ss_pred cCCC
Q 042863 557 VECE 560 (680)
Q Consensus 557 ~~~~ 560 (680)
++|.
T Consensus 230 ~~~~ 233 (336)
T 2ast_B 230 SDSV 233 (336)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 4443
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=6.4e-18 Score=166.69 Aligned_cols=178 Identities=19% Similarity=0.133 Sum_probs=104.9
Q ss_pred hhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCC
Q 042863 377 SDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456 (680)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (680)
..+++|+.|.++++..... ..+..+++|++|++++|.++.++ .+..+++|++|++++|...+..+..+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~-----~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV-----QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcccc-----cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 3456666666666543211 12556667777777777666543 56666677777777665444444445666677
Q ss_pred cEEecCCccccccCcccccccCcccEEEecccccccccc-ccCcccccceeecccccCcccchhhccCCcccceeecccc
Q 042863 457 QTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDS-GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGC 535 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 535 (680)
++|++++|...+..+..+..+++|+.|++++|.+...+. .+..+++|+.|++++|......+..++.+++|+.|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 777777665444344445666667777776666665533 3456666666666666433222233456666666666666
Q ss_pred cCcccCCccCCCCCCcCeEeecCCC
Q 042863 536 PCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 536 ~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
.+.+..+..+..+++|+.|++++|+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCC
Confidence 6555445555666666666666653
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.6e-17 Score=185.42 Aligned_cols=137 Identities=16% Similarity=0.201 Sum_probs=101.1
Q ss_pred CCCCCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccC
Q 042863 350 SQSIPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGN 428 (680)
Q Consensus 350 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~ 428 (680)
....|..++.+.+.++.+.... +..|.++++|++|++++|... .+.+.+|.++++|++|+|++|+++.+|. .+.+
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3456778899999888765432 345788999999999888632 2334568888999999999998887765 5788
Q ss_pred cCCcceeccccccCCCccChhhcCCCCCcEEecCCccccc-cCcccccccCcccEEEeccccc
Q 042863 429 LKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELE-ELPKDIRYLVSLRVFEVTTKQK 490 (680)
Q Consensus 429 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 490 (680)
+++|++|++++|.+.+..+..++.+++|++|++++|.... ..|..++.+++|++|++++|.+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 8889999998886544444457788888888888876543 4566777778888887776654
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.6e-17 Score=165.06 Aligned_cols=198 Identities=17% Similarity=0.091 Sum_probs=102.9
Q ss_pred hhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccc-cccccCcCCcceeccccccCCCccChhhcCCCC
Q 042863 377 SDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEAL-PKEIGNLKHMRYLDLSRNYKIKKLPNAICELQS 455 (680)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 455 (680)
.++++++.++++++..... +..+ .+.++.|+|++|.++.+ +..+.++++|++|++++|. +..++. ...+++
T Consensus 7 ~~l~~l~~l~~~~~~l~~i----p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~ 78 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTAL----PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPV 78 (290)
T ss_dssp ECSTTCCEEECTTSCCSSC----CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTT
T ss_pred cccCCccEEECCCCCCCcC----CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC-CCCCCc
Confidence 3455566666655432211 1111 24566666666666643 3445566666666666663 233333 245666
Q ss_pred CcEEecCCccccccCcccccccCcccEEEeccccccccc-cccCcccccceeecccccCcccchhhccCCcccceeeccc
Q 042863 456 LQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQD-SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAG 534 (680)
Q Consensus 456 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 534 (680)
|++|++++|. +..+|..+..+++|+.|++++|.++..+ ..+..+++|+.|++++|....-.+..+..+++|+.|++++
T Consensus 79 L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 6666666653 3355555566666666666666665553 3455566666666666543222222345566666666666
Q ss_pred ccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceeccccc
Q 042863 535 CPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVT 595 (680)
Q Consensus 535 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 595 (680)
|.+....+..+..+++|+.|++++|..- .++......++|+.|++.+|+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~------------~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY------------TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCCCSEEECCSCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC------------ccChhhcccccCCeEEeCCCC
Confidence 6554333334455666666666665321 222333344456666665554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=5.3e-18 Score=181.46 Aligned_cols=216 Identities=14% Similarity=0.098 Sum_probs=142.7
Q ss_pred hccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCccc
Q 042863 403 ISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLR 481 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 481 (680)
...+++|+.|+|++|.++.++ ..+.++++|++|++++|.+.+..| +..+++|++|+|++|.+. .+| ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcC
Confidence 344557888888888777554 467778888888888775444333 677778888888877433 333 236778
Q ss_pred EEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCC-CCCCcCeEeecCCC
Q 042863 482 VFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMR-YLSSLETLMFVECE 560 (680)
Q Consensus 482 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 560 (680)
.|++++|.+...+.. .+++|+.|++++|...+..|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 888888777766432 356788888877765544455667777888888888777665665554 67788888887775
Q ss_pred CccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCC
Q 042863 561 SLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLK 637 (680)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~ 637 (680)
.... + ....+++|+.|++++|. ++.+|.. +..+++|+.|++++|. +..+|. .+++|+
T Consensus 181 l~~~------------~-~~~~l~~L~~L~Ls~N~-l~~~~~~-----~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 181 IYDV------------K-GQVVFAKLKTLDLSSNK-LAFMGPE-----FQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240 (487)
T ss_dssp CCEE------------E-CCCCCTTCCEEECCSSC-CCEECGG-----GGGGTTCSEEECTTSC-CCEECTTCCCCTTCC
T ss_pred cccc------------c-ccccCCCCCEEECCCCC-CCCCCHh-----HcCCCCccEEEecCCc-CcccchhhccCCCCC
Confidence 3221 1 11246778888887774 5556543 3367788888888775 344554 345777
Q ss_pred eEEEcCCccc
Q 042863 638 TLRIRGCPAL 647 (680)
Q Consensus 638 ~l~l~~c~~l 647 (680)
.|++++|+..
T Consensus 241 ~L~l~~N~l~ 250 (487)
T 3oja_A 241 HFDLRGNGFH 250 (487)
T ss_dssp EEECTTCCBC
T ss_pred EEEcCCCCCc
Confidence 7888777544
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=5e-18 Score=171.56 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=67.1
Q ss_pred hhccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 402 CISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
.+..+++|++|+|++|.++.++ ..+.++++|++|++++|...+.. + +..+++|++|++++|... .++ ..++|
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L 101 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D-LESLSTLRTLDLNNNYVQ-ELL----VGPSI 101 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E-ETTCTTCCEEECCSSEEE-EEE----ECTTC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h-hhhcCCCCEEECcCCccc-ccc----CCCCc
Confidence 3444445555555555555333 34445555555555555332222 1 444555555555554322 121 22445
Q ss_pred cEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccC-CCCCCcCeEeecCC
Q 042863 481 RVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAM-RYLSSLETLMFVEC 559 (680)
Q Consensus 481 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 559 (680)
+.|++++|.+...+.. .+++|+.|++++|......+..++.+++|+.|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 5555555554444221 23445555555544322222234445555555555554443333322 24455555555554
Q ss_pred C
Q 042863 560 E 560 (680)
Q Consensus 560 ~ 560 (680)
.
T Consensus 180 ~ 180 (317)
T 3o53_A 180 F 180 (317)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.6e-17 Score=164.56 Aligned_cols=203 Identities=19% Similarity=0.109 Sum_probs=141.9
Q ss_pred cceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEe
Q 042863 407 QFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEV 485 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 485 (680)
++|++|++++|.++.++. .+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888876654 6777888888888887554444556777888888888887666555567778888888888
Q ss_pred cccccccccc-ccCcccccceeecccccCcc-cchhhccCCcccceeecccccCcccCCccCCCCCCcC----eEeecCC
Q 042863 486 TTKQKSLQDS-GIGCLVSLRCLIISHCRNLE-YLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLE----TLMFVEC 559 (680)
Q Consensus 486 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 559 (680)
++|.+...+. .+..+++|+.|++++|.... .+|..+..+++|+.|++++|.+.+..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8887776643 57778888888888776433 2567777888888888888876655555565556666 7777777
Q ss_pred CCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCC
Q 042863 560 ESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKL 626 (680)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 626 (680)
.... ++.......+|+.|++++|. ++.++.. .+..+++|+.|++++|+..
T Consensus 188 ~l~~------------~~~~~~~~~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNF------------IQPGAFKEIRLKELALDTNQ-LKSVPDG----IFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCE------------ECTTSSCSCCEEEEECCSSC-CSCCCTT----TTTTCCSCCEEECCSSCBC
T ss_pred cccc------------cCccccCCCcccEEECCCCc-eeecCHh----HhcccccccEEEccCCccc
Confidence 5322 11222233478888888875 6666643 2347888889999888743
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=7.7e-17 Score=175.95 Aligned_cols=113 Identities=22% Similarity=0.150 Sum_probs=49.1
Q ss_pred CcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEe
Q 042863 406 SQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEV 485 (680)
Q Consensus 406 ~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 485 (680)
+++|++|+|++|.++.+|. .+++|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|++|++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSV 148 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEEC
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEEC
Confidence 4455555555555544443 34455555555442 222333 33445555555443 2233432 244555555
Q ss_pred ccccccccccccCcccccceeecccccCcccchhhccCCcccceeeccccc
Q 042863 486 TTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 486 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 536 (680)
++|.++.++. .+++|+.|++++|. ++.+| ..+++|+.|++++|.
T Consensus 149 s~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 149 SDNQLASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC
T ss_pred cCCcCCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCC
Confidence 5554444332 12344444444433 22233 233444555554444
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=164.44 Aligned_cols=221 Identities=14% Similarity=0.053 Sum_probs=155.5
Q ss_pred CccEEEEecCCcccchHHHHH--hhccCcceeEEEeCCCCcc-cccccc--cCcCCcceeccccccCCCccC----hhhc
Q 042863 381 RVRTIFFSINDEKVSQSFVRS--CISKSQFLRVLNLSGSAIE-ALPKEI--GNLKHMRYLDLSRNYKIKKLP----NAIC 451 (680)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~-~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~ 451 (680)
.++.+.+..+.. ....+.. .+..+++|++|++++|.++ ..|..+ ..+++|++|++++|......+ ..+.
T Consensus 65 ~l~~l~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQV--PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCC--BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcC--CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 466677766542 2222222 1234567999999999988 556666 889999999999997665544 3345
Q ss_pred CCCCCcEEecCCccccccCcccccccCcccEEEeccccccc---cc--cccCcccccceeecccccCcccchh----hcc
Q 042863 452 ELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL---QD--SGIGCLVSLRCLIISHCRNLEYLFD----DID 522 (680)
Q Consensus 452 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~--~~l~~l~~L~~L~l~~~~~~~~~~~----~~~ 522 (680)
.+++|++|++++|......|..++.+++|++|++++|.+.. .+ ..+..+++|+.|++++|.. +.++. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHh
Confidence 68999999999998766667788899999999999998654 22 2336788999999999764 44443 246
Q ss_pred CCcccceeecccccCcccCCccCCCC---CCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcc
Q 042863 523 QLRVLRSLLIAGCPCLISLPPAMRYL---SSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLE 599 (680)
Q Consensus 523 ~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 599 (680)
.+++|+.|++++|.+.+..|..+..+ ++|++|++++|..-. ++... +++|+.|++++|. ++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~------------lp~~~--~~~L~~L~Ls~N~-l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ------------VPKGL--PAKLRVLDLSSNR-LNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS------------CCSCC--CSCCSCEECCSCC-CCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc------------hhhhh--cCCCCEEECCCCc-CCC
Confidence 78999999999998877767666665 688888888875221 11111 2678888888774 555
Q ss_pred cchhhhhhhcccCCccceeeeccCCC
Q 042863 600 LPQWLLQESLRNFQALEGLVIGNCPK 625 (680)
Q Consensus 600 ~~~~~~~~~l~~~~~L~~L~l~~~~~ 625 (680)
+|. +..+++|+.|++++|+.
T Consensus 287 ~~~------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 287 APQ------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCC------TTSCCCCSCEECSSTTT
T ss_pred Cch------hhhCCCccEEECcCCCC
Confidence 543 23667777888877763
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.6e-17 Score=162.29 Aligned_cols=209 Identities=16% Similarity=0.053 Sum_probs=164.1
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
...+++|+.|++++|.++.++ .+..+++|++|++++|... .++ .+..+++|++|++++|...+..+..+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 456789999999999988765 4788999999999999644 344 5889999999999998766555556789999999
Q ss_pred EEecccccccccc-ccCcccccceeecccccCcccch-hhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 483 FEVTTKQKSLQDS-GIGCLVSLRCLIISHCRNLEYLF-DDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 483 L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
|++++|.+...+. .+..+++|+.|++++|.. +.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 9999999988754 478899999999999864 4454 446889999999999998776666667889999999999985
Q ss_pred CccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCCCCCCe
Q 042863 561 SLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDMLHLKT 638 (680)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~L~~ 638 (680)
... ..+.....+++|+.|++++|+.. ..|++|+.|++++|...+.+|..+.++..
T Consensus 193 l~~-----------~~~~~~~~l~~L~~L~l~~N~~~------------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKS-----------VPDGVFDRLTSLQYIWLHDNPWD------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSC-----------CCTTTTTTCTTCCEEECCSSCBC------------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCc-----------cCHHHHhCCcCCCEEEccCCCcc------------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 322 12234566789999999988531 25778888998888777777776665544
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.2e-16 Score=157.50 Aligned_cols=198 Identities=19% Similarity=0.160 Sum_probs=91.7
Q ss_pred eeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcc-cccccCcccEEEecc
Q 042863 409 LRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPK-DIRYLVSLRVFEVTT 487 (680)
Q Consensus 409 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 487 (680)
++.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|... .+|. .+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCC
Confidence 4455555555555444332 34555555555333322334445555555555554332 2332 234455555555555
Q ss_pred ccccccc-cccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccc
Q 042863 488 KQKSLQD-SGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNL 566 (680)
Q Consensus 488 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 566 (680)
|.+...+ ..+..+++|+.|++++|......+..+..+++|+.|++++|.+....+..+..+++|++|++++|....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 171 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--- 171 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE---
Confidence 5554442 233445555555555544322222334455555555555554433333334555555555555553111
Q ss_pred cccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCC
Q 042863 567 SMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPK 625 (680)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 625 (680)
........+++|+.|++++| .++.++.. .+..+++|+.|++++|+.
T Consensus 172 --------~~~~~~~~l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 --------VPEGAFDKLTELKTLKLDNN-QLKRVPEG----AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp --------CCTTTTTTCTTCCEEECCSS-CCSCCCTT----TTTTCTTCCEEECCSSCB
T ss_pred --------eChhHhccCCCcCEEECCCC-cCCcCCHH----HhccccCCCEEEecCCCe
Confidence 00112233455555555555 24444432 223556666666666653
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=3.8e-18 Score=174.37 Aligned_cols=251 Identities=17% Similarity=0.120 Sum_probs=185.5
Q ss_pred eeEEEEeccCcchhhhHHHhhhc--CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcc-c-ccccccCcCCc
Q 042863 357 VRHLSFVGANASRKDFSRFLSDL--GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIE-A-LPKEIGNLKHM 432 (680)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~-~~~~~~~l~~L 432 (680)
.+.+.+.++... +..+..+ +.++.|++++|...... ..+..+++|++|++++|.++ . ++..+.++++|
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccc----hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 456666665544 3345555 88999999887532211 12557899999999999988 3 77788999999
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCccccc--cCcccccccCcccEEEeccc-cccc--cccccCccc-cccee
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELE--ELPKDIRYLVSLRVFEVTTK-QKSL--QDSGIGCLV-SLRCL 506 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~--~~~~l~~l~-~L~~L 506 (680)
++|++++|......+..++.+++|++|++++|...+ .++..+..+++|++|++++| .++. .+..+..++ +|+.|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 999999997666778888899999999999995444 36777889999999999999 8775 355677889 99999
Q ss_pred eccccc-Cc--ccchhhccCCcccceeeccccc-CcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCC
Q 042863 507 IISHCR-NL--EYLFDDIDQLRVLRSLLIAGCP-CLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTT 582 (680)
Q Consensus 507 ~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (680)
++++|. .+ ..++..+..+++|+.|++++|. +....+..+..+++|++|++++|..+... .+ .....
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~---------~~-~~l~~ 270 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE---------TL-LELGE 270 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG---------GG-GGGGG
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH---------HH-HHHhc
Confidence 999985 33 4567777889999999999998 45566677889999999999999643311 11 12345
Q ss_pred CCcccceecccccCCcccchhhhhhhcccC-CccceeeeccCCCCCCCCcCCC
Q 042863 583 RPHLRKLLIGQVTPLLELPQWLLQESLRNF-QALEGLVIGNCPKLLSLPEDML 634 (680)
Q Consensus 583 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~l~~~~~ 634 (680)
+++|+.|++++| +++... ..+ .+|+.|++++|......|....
T Consensus 271 ~~~L~~L~l~~~-----i~~~~~----~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 271 IPTLKTLQVFGI-----VPDGTL----QLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCCEEECTTS-----SCTTCH----HHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCEEeccCc-----cCHHHH----HHHHhhCcceEEecccCccccCCccc
Confidence 889999999988 332211 122 3466667877765444454433
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=3.2e-17 Score=165.19 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=157.0
Q ss_pred ccCcceeEEEeCCCCcc-cccccc--cCcCCcceeccccccCCCccChhhcCC-----CCCcEEecCCccccccCccccc
Q 042863 404 SKSQFLRVLNLSGSAIE-ALPKEI--GNLKHMRYLDLSRNYKIKKLPNAICEL-----QSLQTLNLEECLELEELPKDIR 475 (680)
Q Consensus 404 ~~~~~L~~L~L~~~~~~-~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~ 475 (680)
.++++|++|+|++|.++ .+|..+ ..+++|++|++++|...+. |..+..+ ++|++|++++|...+..|..++
T Consensus 92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 36899999999999998 677766 8899999999999976555 7767666 8999999999987776668899
Q ss_pred ccCcccEEEecccccccc---cccc--CcccccceeecccccCcc--cch-hhccCCcccceeecccccCcccCC-ccCC
Q 042863 476 YLVSLRVFEVTTKQKSLQ---DSGI--GCLVSLRCLIISHCRNLE--YLF-DDIDQLRVLRSLLIAGCPCLISLP-PAMR 546 (680)
Q Consensus 476 ~l~~L~~L~l~~~~~~~~---~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 546 (680)
.+++|++|++++|.+... +..+ ..+++|+.|++++|.... .++ ..+..+++|+.|++++|.+.+..| ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 999999999999986543 3333 788999999999986431 333 234578999999999998877654 4566
Q ss_pred CCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCC
Q 042863 547 YLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPK 625 (680)
Q Consensus 547 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 625 (680)
.+++|++|++++|..- .++.... ++|+.|++++|. ++.+|. +..+++|+.|++++|+.
T Consensus 251 ~l~~L~~L~Ls~N~l~------------~ip~~~~--~~L~~L~Ls~N~-l~~~p~------~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK------------QVPKGLP--AKLSVLDLSYNR-LDRNPS------PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCTTCCEEECTTSCCS------------SCCSSCC--SEEEEEECCSSC-CCSCCC------TTTSCEEEEEECTTCTT
T ss_pred hcCCCCEEECCCCccC------------hhhhhcc--CCceEEECCCCC-CCCChh------HhhCCCCCEEeccCCCC
Confidence 7899999999998532 1222222 789999999984 666664 34789999999999874
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=3.5e-17 Score=173.32 Aligned_cols=256 Identities=17% Similarity=0.082 Sum_probs=128.9
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcc-------------eeEEEeCCCCccc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQF-------------LRVLNLSGSAIEA 421 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-------------L~~L~L~~~~~~~ 421 (680)
..++.+.+.++.. ..+|..+.++++|+.|++++|. ....++..++.+.+ ++.|++++|.++.
T Consensus 11 ~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp -------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccchhhhcccCch--hhCChhHhcccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 4567777777665 4567778888999988888764 22223334555544 4888888888877
Q ss_pred ccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCccc
Q 042863 422 LPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLV 501 (680)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~ 501 (680)
+|.. .++|++|++++|...+ +|.. +++|++|++++|... .+|.. .++|++|++++|.+..++ .+..++
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~ 153 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEKLP-ELQNSS 153 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSSCC-CCTTCT
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCCCc-ccCCCC
Confidence 7653 3677788887775443 5542 356777777766433 33321 146677777777666655 466667
Q ss_pred ccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccc--------cccCC
Q 042863 502 SLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSM--------QLEGE 573 (680)
Q Consensus 502 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~~~~ 573 (680)
+|+.|++++|. ++.+|.. .++|+.|++++|.+.+ +| .++.+++|++|++++|.....+... .....
T Consensus 154 ~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 154 FLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 227 (454)
T ss_dssp TCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCc-CcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcC
Confidence 77777776654 3334432 2466666666665443 44 3666666666666666422110000 00000
Q ss_pred CCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCcCCCCCCeEEEcCC
Q 042863 574 GSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPEDMLHLKTLRIRGC 644 (680)
Q Consensus 574 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~~~~~L~~l~l~~c 644 (680)
..++ ....+++|+.|++++|. ++.+|. .+++|+.|++++|. +..+|..+++|+.|++++|
T Consensus 228 ~~lp-~~~~l~~L~~L~l~~N~-l~~l~~--------~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 228 EELP-ELQNLPFLTTIYADNNL-LKTLPD--------LPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp SSCC-CCTTCTTCCEEECCSSC-CSSCCS--------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred Cccc-ccCCCCCCCEEECCCCc-CCcccc--------cccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 1112 13345556666666553 344442 23556666666654 3445555566666666665
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=9.6e-19 Score=187.28 Aligned_cols=310 Identities=17% Similarity=0.132 Sum_probs=148.2
Q ss_pred ceeEEEEeccCcchh---hhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCc----ceeEEEeCCCCcc-----ccc
Q 042863 356 RVRHLSFVGANASRK---DFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQ----FLRVLNLSGSAIE-----ALP 423 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~-----~~~ 423 (680)
+++.+.+.++..... .++..+..+++|++|++++|.. ....+......++ +|++|+|++|.++ .++
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC--HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC--ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 355556655554433 2344455556666666655542 2222222222333 4666666666555 234
Q ss_pred ccccCcCCcceeccccccCCCccChhh-----cCCCCCcEEecCCcccccc----CcccccccCcccEEEecc-------
Q 042863 424 KEIGNLKHMRYLDLSRNYKIKKLPNAI-----CELQSLQTLNLEECLELEE----LPKDIRYLVSLRVFEVTT------- 487 (680)
Q Consensus 424 ~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~------- 487 (680)
..+.++++|++|++++|......+..+ ...++|++|++++|..... ++..+..+++|++|++++
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 445555666666666554322211111 1133455555555533321 233333444455555544
Q ss_pred ----------------------cccccc-----ccccCcccccceeecccccCccc----chhh-ccCCcccceeecccc
Q 042863 488 ----------------------KQKSLQ-----DSGIGCLVSLRCLIISHCRNLEY----LFDD-IDQLRVLRSLLIAGC 535 (680)
Q Consensus 488 ----------------------~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----~~~~-~~~l~~L~~L~l~~~ 535 (680)
|.++.. +..+..+++|+.|++++|..... +.+. ...+++|+.|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 444431 22333445555555555432111 1111 123455555555555
Q ss_pred cCccc----CCccCCCCCCcCeEeecCCCCccccccccccCCCCc-CcccCCCCcccceecccccCCcccchhhhhhhcc
Q 042863 536 PCLIS----LPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSH-QASNTTRPHLRKLLIGQVTPLLELPQWLLQESLR 610 (680)
Q Consensus 536 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 610 (680)
.+... ++..+..+++|++|++++|..-... . ..+ .......++|+.|++++|. ++..........+.
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~------~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-A------RLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLA 338 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH-H------HHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH-H------HHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHh
Confidence 44332 3444455566666666665321100 0 000 0112234688888888885 44433222234556
Q ss_pred cCCccceeeeccCCCCC----CCCc----CCCCCCeEEEcCCcccccccCCCCCCCCccccccceeEecCcccc
Q 042863 611 NFQALEGLVIGNCPKLL----SLPE----DMLHLKTLRIRGCPALSDRCKPLTGEDWHKIAHVAHIKLDDEIIK 676 (680)
Q Consensus 611 ~~~~L~~L~l~~~~~~~----~l~~----~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 676 (680)
.+++|+.|++++|.... .+.. ..++|+.|++++|.--...+..+. .......++..+++.++.+.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCCCCCEEECCSSSCC
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH-HHHHhCCCccEEECCCCCCC
Confidence 78999999999985321 1111 256899999999943221111111 12233457777887776554
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=6.2e-17 Score=156.41 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=101.8
Q ss_pred ceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccC-hhhcCCCCCcEEecCC-ccccccCcccccccCcccEEE
Q 042863 408 FLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLP-NAICELQSLQTLNLEE-CLELEELPKDIRYLVSLRVFE 484 (680)
Q Consensus 408 ~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 484 (680)
+|++|++++|.++.++. .+.++++|++|++++|..++.++ ..+..+++|++|++++ |......+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665544 45556666666666664233333 2455566666666665 333222223455555666666
Q ss_pred eccccccccccccCcccccc---eeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcC-eEeecCCC
Q 042863 485 VTTKQKSLQDSGIGCLVSLR---CLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLE-TLMFVECE 560 (680)
Q Consensus 485 l~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~ 560 (680)
+++|.+..++. +..+++|+ .|++++|..++.++ +..+..+++|+ +|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-----------------------~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-----------------------TTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcC-----------------------cccccchhcceeEEEcCCCC
Confidence 66555555433 44444444 44554442233332 22344455555 55555543
Q ss_pred CccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccC-CccceeeeccCCCCCCCCc-CCCCCCe
Q 042863 561 SLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNF-QALEGLVIGNCPKLLSLPE-DMLHLKT 638 (680)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~l~~-~~~~L~~ 638 (680)
... ++......++|+.|++++|+.++.++.. .+..+ ++|+.|++++|+ ++.+|. .+++|+.
T Consensus 168 l~~------------i~~~~~~~~~L~~L~L~~n~~l~~i~~~----~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~ 230 (239)
T 2xwt_C 168 FTS------------VQGYAFNGTKLDAVYLNKNKYLTVIDKD----AFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKE 230 (239)
T ss_dssp CCE------------ECTTTTTTCEEEEEECTTCTTCCEECTT----TTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSE
T ss_pred Ccc------------cCHhhcCCCCCCEEEcCCCCCcccCCHH----HhhccccCCcEEECCCCc-cccCChhHhccCce
Confidence 111 1111111246666666666445555432 23366 777777777765 445554 4677777
Q ss_pred EEEcCCcc
Q 042863 639 LRIRGCPA 646 (680)
Q Consensus 639 l~l~~c~~ 646 (680)
|++.+|..
T Consensus 231 L~l~~~~~ 238 (239)
T 2xwt_C 231 LIARNTWT 238 (239)
T ss_dssp EECTTC--
T ss_pred eeccCccC
Confidence 77777643
No 79
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=9.8e-16 Score=157.39 Aligned_cols=291 Identities=14% Similarity=0.152 Sum_probs=177.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC------CHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF------GERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 74 (680)
|+||+++++.+.+.+.. + ++++|+|++|+|||+|++++++. . ..+|+++.... +...++
T Consensus 14 ~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 14 IFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNE--R-----PGILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHH--S-----SEEEEEHHHHHHTTTCBCHHHHH
T ss_pred cCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHH--c-----CcEEEEeecccccccCCCHHHHH
Confidence 79999999999999965 1 58999999999999999999873 2 27788875432 455555
Q ss_pred HHHHHHhcC-----------------C-CCCCcCHHHHHHHHHHHhCC-ceEEEEEecCCCCCh-------hHHHHHHHh
Q 042863 75 TKIIKSITG-----------------Q-NQGDLDIEQLQRILRVCLNG-KRYLLVMDDVWNEDP-------KVWDKLKSL 128 (680)
Q Consensus 75 ~~~~~~l~~-----------------~-~~~~~~~~~~~~~~~~~l~~-~~~llvlD~~~~~~~-------~~~~~l~~~ 128 (680)
..+.+.+.. . .....+..++.+.+.+..+. ++++||+||+++.+. ..+..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 555554432 0 00123556666666665543 389999999987432 334444444
Q ss_pred cCCCCCCCEEEEecCchHH-HHh---hc----cCCC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHh
Q 042863 129 LSGGAKGSKILVTTRSNKV-ASV---MG----TRGG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKK 199 (680)
Q Consensus 129 l~~~~~~~~iiiTsR~~~~-~~~---~~----~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 199 (680)
+... .+..+|+|++.... ... .. ..+. ...+.+.+|+.+|+.+++............ .+.+..+++.
T Consensus 159 ~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~ 234 (350)
T 2qen_A 159 YDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVEL 234 (350)
T ss_dssp HHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHH
T ss_pred HHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Confidence 3332 36788999887653 221 01 1111 236899999999999999886533322222 2567899999
Q ss_pred hCCChhHHHHHHhhhccCCChhhHHHHHhhhhcccccccccchhhHhccccCC---cHHHHHHHHHhhcCCCCeeechHH
Q 042863 200 CGGIPLAVRTLGSLLYCSTDEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQL---PPRLKQCVAYCCIFPKDYQFSSVY 276 (680)
Q Consensus 200 ~~g~Pl~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L---~~~~~~~~~~~~~f~~~~~~~~~~ 276 (680)
++|+|+++..++..+....+...+ .. .. .+.+...+...+..+ ++..+.++..++. .. ++...
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~--~~-~~-------~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~--~~~~~ 300 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRA--MK-RT-------LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GY--NRWSL 300 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHH--HH-HH-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC--CSHHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHH--HH-HH-------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CC--CCHHH
Confidence 999999999988654321221111 10 00 001111111122223 6788889988887 22 33333
Q ss_pred HHHHHHHcCCCCCCCCCCchhHHHHHHHHHHHhCCcccccccCccEeEEE-EcHHHHHHHH
Q 042863 277 LVQFWMAQGLLHPLNENDELDDIGMRSLKQLCSRSFFHDLVRGFEMFTFK-MHDLIHDLAQ 336 (680)
Q Consensus 277 l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~-~H~li~~~~~ 336 (680)
+........ + .........+++.|.+.+++... ++ .|. .|++++.+.+
T Consensus 301 l~~~~~~~~------~-~~~~~~~~~~l~~L~~~gli~~~--~~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKG------T-KIPEPRLYALLENLKKMNWIVEE--DN---TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTT------C-CCCHHHHHHHHHHHHHTTSEEEE--TT---EEEESSHHHHHHHT
T ss_pred HHHHHHHHh------C-CCCHHHHHHHHHHHHhCCCEEec--CC---EEEEecHHHHHHHc
Confidence 333221110 0 11234566789999999998754 22 354 4788888764
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.4e-16 Score=165.72 Aligned_cols=118 Identities=23% Similarity=0.296 Sum_probs=53.0
Q ss_pred cceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEec
Q 042863 407 QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVT 486 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 486 (680)
++|++|++++|.++.+| .+.++++|++|++++|... .+|.. .++|++|++++|... .+| .++.+++|+.|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCC-cCc-cccCCCCCCEEECC
Confidence 35555555555555544 3555555555555555322 23331 134555555554322 233 34455555555555
Q ss_pred cccccccccccCcccccceeecccccCcccchhhccCCcccceeeccccc
Q 042863 487 TKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 487 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 536 (680)
+|.+...+.. .++|+.|++++|. ++.+| .++.+++|+.|++++|.
T Consensus 204 ~N~l~~l~~~---~~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 204 NNSLKKLPDL---PLSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp SSCCSSCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCcCCcCCCC---cCcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCc
Confidence 5544443221 1244444444443 22333 24444444444444443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.6e-16 Score=159.54 Aligned_cols=147 Identities=24% Similarity=0.283 Sum_probs=67.5
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
+..+++|++|++++|.++.++. +.++++|++|++++|. ...++ .+..+++|++|++++|... .++. +..+++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCE
Confidence 4445555555555555554444 4555555555555553 22222 2445555555555554322 2332 445555555
Q ss_pred EEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCC
Q 042863 483 FEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 483 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
|++++|.+...+. +..+++|+.|++++|. ++.++. +..+++|+.|++++|.+.+ ++. +..+++|++|++++|
T Consensus 134 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 134 LYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTS
T ss_pred EECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCC
Confidence 5555555444432 4444455555555443 222332 4444455555554444322 222 344444444444444
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=2.9e-18 Score=178.71 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=171.8
Q ss_pred hHHHhhhcCCccEEEEecCCccc-chHHHHHhhccCcceeEEEeCCCCcc----ccccc-------ccCcCCcceecccc
Q 042863 372 FSRFLSDLGRVRTIFFSINDEKV-SQSFVRSCISKSQFLRVLNLSGSAIE----ALPKE-------IGNLKHMRYLDLSR 439 (680)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~----~~~~~-------~~~l~~L~~L~l~~ 439 (680)
+...+..+++|+.|++++|.... ....+...+..+++|++|+|++|.+. .+|.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45667888999999999875332 12234456778999999999997554 23333 36789999999999
Q ss_pred ccCCC----ccChhhcCCCCCcEEecCCcccccc----Cccccccc---------CcccEEEeccccccc--cc---ccc
Q 042863 440 NYKIK----KLPNAICELQSLQTLNLEECLELEE----LPKDIRYL---------VSLRVFEVTTKQKSL--QD---SGI 497 (680)
Q Consensus 440 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~~~~--~~---~~l 497 (680)
|.+.. .+|..+..+++|++|+|++|.+... ++..+..+ ++|++|++++|.++. .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 97665 3677788899999999999876433 23334444 889999999998862 23 356
Q ss_pred CcccccceeecccccCcc-----cchhhccCCcccceeecccccCc----ccCCccCCCCCCcCeEeecCCCCccccccc
Q 042863 498 GCLVSLRCLIISHCRNLE-----YLFDDIDQLRVLRSLLIAGCPCL----ISLPPAMRYLSSLETLMFVECESLSLNLSM 568 (680)
Q Consensus 498 ~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 568 (680)
..+++|+.|++++|.... .++..+..+++|+.|++++|.+. ..+|..+..+++|++|++++|..-...
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~--- 260 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG--- 260 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH---
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh---
Confidence 678899999999886432 12337778899999999998874 567777888899999999988632210
Q ss_pred cccCCCCcCccc--CCCCcccceecccccCCcc-----cchhhhhhhcccCCccceeeeccCCCCCC
Q 042863 569 QLEGEGSHQASN--TTRPHLRKLLIGQVTPLLE-----LPQWLLQESLRNFQALEGLVIGNCPKLLS 628 (680)
Q Consensus 569 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 628 (680)
...++... ..+++|+.|++++|. ++. ++..+. ..+++|+.|++++|+....
T Consensus 261 ----~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~----~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 261 ----AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID----EKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp ----HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH----HHCTTCCEEECTTSBSCTT
T ss_pred ----HHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH----hcCCCceEEEccCCcCCcc
Confidence 00011122 337889999999885 444 444332 3689999999999875443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.1e-16 Score=154.67 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=135.6
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCC-cccccc-cccCcCCcceecccc-ccCCCccChhhcCCCCC
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSA-IEALPK-EIGNLKHMRYLDLSR-NYKIKKLPNAICELQSL 456 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L 456 (680)
++|+.|++++|... ...+..+.++++|++|++++|. ++.++. .+.++++|++|++++ |......+..+..+++|
T Consensus 31 ~~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 47999999998643 3334468899999999999997 887775 688999999999998 64443334568899999
Q ss_pred cEEecCCccccccCcccccccCccc---EEEeccc-ccccccc-ccCcccccc-eeecccccCcccchhhccCCccccee
Q 042863 457 QTLNLEECLELEELPKDIRYLVSLR---VFEVTTK-QKSLQDS-GIGCLVSLR-CLIISHCRNLEYLFDDIDQLRVLRSL 530 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~-~l~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L 530 (680)
++|++++|... .+|. +..+++|+ .|++++| .+..++. .+..+++|+ .|++++|. ++.+|......++|+.|
T Consensus 108 ~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 108 KFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAV 184 (239)
T ss_dssp CEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEE
T ss_pred CEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEE
Confidence 99999998654 4776 88888888 9999999 8887754 578899999 99999876 44676554444788888
Q ss_pred eccccc-CcccCCccCCCC-CCcCeEeecCCC
Q 042863 531 LIAGCP-CLISLPPAMRYL-SSLETLMFVECE 560 (680)
Q Consensus 531 ~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~ 560 (680)
++++|. +....+..+..+ ++|+.|++++|.
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 888885 443334556777 778887777764
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=3.7e-16 Score=174.42 Aligned_cols=130 Identities=22% Similarity=0.120 Sum_probs=105.7
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
++++.|+|++|... .+.+..|.++++|++|+|++|.++.+++ .+.++++|++|+|++|.+....+..+.++++|++
T Consensus 52 ~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 47999999998743 3344578999999999999999998865 6899999999999999644444456889999999
Q ss_pred EecCCccccccCcccccccCcccEEEecccccccc--ccccCcccccceeeccccc
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ--DSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~ 512 (680)
|++++|...+..+..++++++|++|++++|.+... +..+..+++|+.|++++|.
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999976554445689999999999999998754 5566778888888887653
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.2e-16 Score=155.60 Aligned_cols=197 Identities=19% Similarity=0.135 Sum_probs=124.5
Q ss_pred CccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcEE
Q 042863 381 RVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTL 459 (680)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 459 (680)
..++++++++..... +..+ .++|+.|+|++|.++.++. .+.++++|++|++++|......+..+..+++|++|
T Consensus 17 ~~~~l~~~~~~l~~i----p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI----PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSSC----CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCcc----CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 356666665542211 1111 2467777887777776654 57777778888887775443333334667778888
Q ss_pred ecCCccccccCcccccccCcccEEEeccccccccc-cccCcccccceeecccccCcccchh-hccCCcccceeecccccC
Q 042863 460 NLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQD-SGIGCLVSLRCLIISHCRNLEYLFD-DIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 460 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 537 (680)
++++|......+..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|. ++.++. .+..+++|+.|++++|.+
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcC
Confidence 88777554433345567777888888777777663 345677778888887765 334443 366777788888877766
Q ss_pred cccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceeccccc
Q 042863 538 LISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVT 595 (680)
Q Consensus 538 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 595 (680)
....+..+..+++|++|++++|.... ........+++|+.|++++|+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKR-----------VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSC
T ss_pred cEeChhHhccCCCcCEEECCCCcCCc-----------CCHHHhccccCCCEEEecCCC
Confidence 55445556777788888887774221 111234456777788887775
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.2e-16 Score=158.03 Aligned_cols=200 Identities=20% Similarity=0.101 Sum_probs=118.3
Q ss_pred CccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcEE
Q 042863 381 RVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTL 459 (680)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 459 (680)
+|+.|++++|.... .....+.++++|++|++++|.++.++. .+.++++|++|++++|......+..+..+++|++|
T Consensus 29 ~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 56777776664321 122346667777777777777765543 56667777777777775544444556667777777
Q ss_pred ecCCccccccCcccccccCcccEEEeccccccc--cccccCcccccceeecccccCcccchhhccCCcccc----eeecc
Q 042863 460 NLEECLELEELPKDIRYLVSLRVFEVTTKQKSL--QDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLR----SLLIA 533 (680)
Q Consensus 460 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~ 533 (680)
++++|......+..++.+++|++|++++|.+.. .+..+..+++|+.|++++|......+..+..+++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 777765544444456677777777777777665 355666677777777777654332333444444444 66777
Q ss_pred cccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceeccccc
Q 042863 534 GCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVT 595 (680)
Q Consensus 534 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 595 (680)
+|.+....+. .....+|++|++++|..-. ........+++|+.|++++|+
T Consensus 186 ~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 186 LNPMNFIQPG-AFKEIRLKELALDTNQLKS-----------VPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCCCEECTT-SSCSCCEEEEECCSSCCSC-----------CCTTTTTTCCSCCEEECCSSC
T ss_pred CCcccccCcc-ccCCCcccEEECCCCceee-----------cCHhHhcccccccEEEccCCc
Confidence 7665433333 2233467777777764211 111233456677777777664
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=6e-16 Score=153.71 Aligned_cols=202 Identities=21% Similarity=0.168 Sum_probs=165.3
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
+..+++++.++++++.++.+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+. .++.. +.+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCE
Confidence 6778999999999999999987664 68999999999776666778899999999999998644 44443 78899999
Q ss_pred EEeccccccccccccCcccccceeecccccCcccch-hhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCC
Q 042863 483 FEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLF-DDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECES 561 (680)
Q Consensus 483 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 561 (680)
|++++|.+..++..+..+++|+.|++++|.. +.++ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|..
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 9999999998888888999999999999864 4454 5688899999999999987766666778899999999999852
Q ss_pred ccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCC
Q 042863 562 LSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKL 626 (680)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 626 (680)
-. .....+..+++|+.|++++|. ++.+|..+. .+++|+.|++++|+..
T Consensus 161 ~~-----------l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~-----~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TE-----------LPAGLLNGLENLDTLLLQENS-LYTIPKGFF-----GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SC-----------CCTTTTTTCTTCCEEECCSSC-CCCCCTTTT-----TTCCCSEEECCSCCBC
T ss_pred Cc-----------cCHHHhcCcCCCCEEECCCCc-CCccChhhc-----ccccCCeEEeCCCCcc
Confidence 22 112334567899999999984 778887655 6789999999999853
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.68 E-value=1.5e-15 Score=159.80 Aligned_cols=302 Identities=13% Similarity=0.027 Sum_probs=179.5
Q ss_pred CCCchhHHHHHHHHH-hcCCCCCCCCcEEEEE--EcCCCChHHHHHHHhhcchhhhh---cC-CcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEAL-MQTSSGESETVSVIPI--VGIGGLGKTALAQLVFNDQRVEE---HF-ELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l-~~~~~~~~~~~~~v~i--~G~~GiGKTtLa~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~ 73 (680)
|+||+++++.+.+.+ .....+.....+.+.| +|++|+|||+||+++++...... .+ ..++|+++....+...+
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTI 103 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHH
Confidence 689999999999998 5422110134567888 99999999999999997422110 11 23678888777788889
Q ss_pred HHHHHHHhcCCCCC-CcCHHHHHHHHHHHhC--CceEEEEEecCCCCC------hhHHHHHHHhcCCC---C--CCCEEE
Q 042863 74 MTKIIKSITGQNQG-DLDIEQLQRILRVCLN--GKRYLLVMDDVWNED------PKVWDKLKSLLSGG---A--KGSKIL 139 (680)
Q Consensus 74 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~--~~~~llvlD~~~~~~------~~~~~~l~~~l~~~---~--~~~~ii 139 (680)
+..++..++..... ..+...+...+.+.+. +++++||+||+|+.. ...+..+...+... + .+..+|
T Consensus 104 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI 183 (412)
T 1w5s_A 104 LSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFL 183 (412)
T ss_dssp HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEE
Confidence 99999988754332 3345555666666553 678999999997732 24444333333221 2 355578
Q ss_pred EecCchHHHHhhc-------cCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhC------CChhH
Q 042863 140 VTTRSNKVASVMG-------TRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCG------GIPLA 206 (680)
Q Consensus 140 iTsR~~~~~~~~~-------~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Pl~ 206 (680)
+||+...+..... .... ..+.+++++.+++.+++...+...... ....++.+..+++.++ |+|..
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 184 LVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 7887665332211 1111 238999999999999998765322111 1112366789999999 99976
Q ss_pred HHHHHhhhc-----cCC---ChhhHHHHHhhhhcccccccccc-hhhHhccccCCcHHHHHHHHHhhcCC--CCeeechH
Q 042863 207 VRTLGSLLY-----CST---DEHDWEYVRDNEIWKLEQKANDI-LPVLRFSYDQLPPRLKQCVAYCCIFP--KDYQFSSV 275 (680)
Q Consensus 207 l~~~~~~l~-----~~~---~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~L~~~~~~~~~~~~~f~--~~~~~~~~ 275 (680)
+..++.... ... ....+...... .. ...+...+..|++.++.++..++.+. ....++..
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~----------~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSE----------NEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH----------C------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----------HhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 665553321 011 11122111110 11 33455678899999999999888653 22234443
Q ss_pred HHHHHHHH-c-CCCCCCCCCCchhHHHHHHHHHHHhCCcccccc
Q 042863 276 YLVQFWMA-Q-GLLHPLNENDELDDIGMRSLKQLCSRSFFHDLV 317 (680)
Q Consensus 276 ~l~~~w~~-~-g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 317 (680)
.+...+.. . .... ...........++..|.+.+++....
T Consensus 332 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 332 LLRQRYEDASLTMYN---VKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHSC---CCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 33322211 0 0110 11122345667899999999987643
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=4.6e-16 Score=156.19 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=143.0
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
...+++|+.|++++|.++.++ .+..+++|++|++++|. ...++. +..+++|++|++++|.. ..++ .+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCCE
Confidence 345778888888888888776 57788888888888884 444555 78888888888888763 4444 6778888888
Q ss_pred EEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCc
Q 042863 483 FEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESL 562 (680)
Q Consensus 483 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 562 (680)
|++++|.+...+. +..+++|+.|++++|. ++.++. +..+++|+.|++++|.+.. ++. +..+++|++|++++|..-
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 8888888877653 7788888888888875 444544 7778888888888886543 444 778888888888887532
Q ss_pred cccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCC
Q 042863 563 SLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPK 625 (680)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 625 (680)
.. + ....+++|+.|++++|. +..++. +..+++|+.|++++|+.
T Consensus 187 ~~------------~-~l~~l~~L~~L~L~~N~-l~~~~~------l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 DI------------S-PLASLPNLIEVHLKNNQ-ISDVSP------LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CC------------G-GGGGCTTCCEEECTTSC-CCBCGG------GTTCTTCCEEEEEEEEE
T ss_pred cC------------h-hhcCCCCCCEEEccCCc-cCcccc------ccCCCCCCEEEccCCee
Confidence 21 1 14567888888888884 555552 45788888888888864
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=1.5e-15 Score=165.78 Aligned_cols=234 Identities=21% Similarity=0.168 Sum_probs=167.5
Q ss_pred CCCceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCc
Q 042863 353 IPKRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHM 432 (680)
Q Consensus 353 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L 432 (680)
.+++++.+.+.++.+.. ++. .+++|++|++++|..... +. .+++|++|++++|.++.+|. .+++|
T Consensus 59 l~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l----p~---~l~~L~~L~Ls~N~l~~l~~---~l~~L 123 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTSL----PV---LPPGLLELSIFSNPLTHLPA---LPSGL 123 (622)
T ss_dssp CCTTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCSCC----CC---CCTTCCEEEECSCCCCCCCC---CCTTC
T ss_pred hCCCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCCcC----CC---CCCCCCEEECcCCcCCCCCC---CCCCc
Confidence 34678999999887653 232 578999999999864321 11 67899999999999998877 57889
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeeccccc
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (680)
+.|++++|. +..+|.. +++|++|++++|.+ ..+|. .+.+|+.|++++|.++.++ ..+++|+.|++++|.
T Consensus 124 ~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 124 CKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp CEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC
Confidence 999999985 5556653 58899999999854 45664 3467888888888888776 446788888888865
Q ss_pred CcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecc
Q 042863 513 NLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIG 592 (680)
Q Consensus 513 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 592 (680)
++.+|. .+++|+.|++++|.+. .+|. .+++|++|++++|.... ++ ..+++|+.|+++
T Consensus 193 -l~~l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~------------lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 193 -LASLPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS------------LP---VLPSELKELMVS 249 (622)
T ss_dssp -CSCCCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC------------CC---CCCTTCCEEECC
T ss_pred -CCCCCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc------------CC---CCCCcCcEEECC
Confidence 444554 3467888888887654 4554 24778888888874211 11 345778888888
Q ss_pred cccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc---CCCCCCeEEEcCCc
Q 042863 593 QVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE---DMLHLKTLRIRGCP 645 (680)
Q Consensus 593 ~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~---~~~~L~~l~l~~c~ 645 (680)
+| .++.+|. .+++|+.|++++|. ++.+|. .+++|+.|++++|+
T Consensus 250 ~N-~L~~lp~--------~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 250 GN-RLTSLPM--------LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SS-CCSCCCC--------CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC-CCCcCCc--------ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 87 4666663 46778888888875 456664 45678888888875
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=4.4e-17 Score=180.24 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=70.6
Q ss_pred ceeEEEEeccCcchhh---hHHHhhhcCCccEEEEecCCcc-cchHHHHHhhccCcceeEEEeCCCCcccccccccCcCC
Q 042863 356 RVRHLSFVGANASRKD---FSRFLSDLGRVRTIFFSINDEK-VSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKH 431 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 431 (680)
+++.+.+.++...... +......++.|++|++++|... .....++..+.++++|+.|++++|.+..++..+.++++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 4555665555432221 3445556677777777665532 23345555566777777777777766666655666666
Q ss_pred cceeccccccCC---CccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccc
Q 042863 432 MRYLDLSRNYKI---KKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQK 490 (680)
Q Consensus 432 L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 490 (680)
|++|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.+
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcC
Confidence 666666532211 112222334444444444442 2233444444555555555555543
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=159.90 Aligned_cols=221 Identities=13% Similarity=0.068 Sum_probs=166.6
Q ss_pred ceeEEEEeccCcchhhhHHHh--hhcCCccEEEEecCCcccchHHHHHhh--ccCcceeEEEeCCCCccc-cc----ccc
Q 042863 356 RVRHLSFVGANASRKDFSRFL--SDLGRVRTIFFSINDEKVSQSFVRSCI--SKSQFLRVLNLSGSAIEA-LP----KEI 426 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~-~~----~~~ 426 (680)
.++.+.+.........+.... ..+++|+.|++++|... ...+..+ ..+++|++|+|++|.++. .+ ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT---GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB---SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec---cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 467778877776665554433 34577999999998632 1222234 789999999999999984 22 234
Q ss_pred cCcCCcceeccccccCCCccChhhcCCCCCcEEecCCcccccc--Cc--ccccccCcccEEEecccccccccc----ccC
Q 042863 427 GNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEE--LP--KDIRYLVSLRVFEVTTKQKSLQDS----GIG 498 (680)
Q Consensus 427 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~----~l~ 498 (680)
..+++|++|++++|......|..++.+++|++|++++|...+. ++ ..+..+++|++|++++|.++..+. .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 5799999999999987666777888999999999999975542 22 234688999999999999976543 246
Q ss_pred cccccceeecccccCcccchhhccCC---cccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCC
Q 042863 499 CLVSLRCLIISHCRNLEYLFDDIDQL---RVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGS 575 (680)
Q Consensus 499 ~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 575 (680)
.+++|+.|++++|......|..+..+ ++|+.|++++|.+. .+|..+. ++|++|++++|....
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~------------ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR------------ 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS------------
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC------------
Confidence 78999999999988655557766666 69999999999876 7777663 899999999985322
Q ss_pred cCcccCCCCcccceeccccc
Q 042863 576 HQASNTTRPHLRKLLIGQVT 595 (680)
Q Consensus 576 ~~~~~~~~~~L~~L~l~~~~ 595 (680)
++ ....+++|+.|++++|+
T Consensus 287 ~~-~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 AP-QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CC-CTTSCCCCSCEECSSTT
T ss_pred Cc-hhhhCCCccEEECcCCC
Confidence 11 14567999999999986
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=1e-14 Score=150.26 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=170.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc-----CCHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED-----FGERQIMT 75 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 75 (680)
||||+++++.+.+ +.. ++++|+|++|+|||+|++++++ .... ..+|+++... .+....+.
T Consensus 15 ~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 15 FFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred hcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHH
Confidence 7999999999999 732 4899999999999999999987 3322 3678887643 23344444
Q ss_pred HHHHHhc-------------CC-------C---------CCCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh----hHH
Q 042863 76 KIIKSIT-------------GQ-------N---------QGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP----KVW 122 (680)
Q Consensus 76 ~~~~~l~-------------~~-------~---------~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~----~~~ 122 (680)
.+...+. .. . .......++.+.+.+..+ ++++||+||+++.+. ..+
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 4333221 00 0 012345555555555433 489999999988432 233
Q ss_pred HHHHHhcCCCCCCCEEEEecCchHHHHhh----c----cCCC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHH
Q 042863 123 DKLKSLLSGGAKGSKILVTTRSNKVASVM----G----TRGG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIG 193 (680)
Q Consensus 123 ~~l~~~l~~~~~~~~iiiTsR~~~~~~~~----~----~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (680)
..+....... .+..+|+|++........ . .... ...+.+.+|+.+|+.+++............+ .
T Consensus 159 ~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~ 232 (357)
T 2fna_A 159 PALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----Y 232 (357)
T ss_dssp HHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----H
T ss_pred HHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----H
Confidence 3343333322 367799999876532211 1 1112 2468999999999999998865322222221 1
Q ss_pred HHHHHhhCCChhHHHHHHhhhccCCChhhHHH-HHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCCCCeee
Q 042863 194 EEIVKKCGGIPLAVRTLGSLLYCSTDEHDWEY-VRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFPKDYQF 272 (680)
Q Consensus 194 ~~i~~~~~g~Pl~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~~~~ 272 (680)
..|++.++|+|+++..++..+....+...|.. +.+.... .....+...+... ..+++..+.++..+++ . .
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~-~~l~~~~~~~l~~la~-g-~--- 303 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK---LILKEFENFLHGR-EIARKRYLNIMRTLSK-C-G--- 303 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHHHHHHHHHTTC-GGGHHHHHHHHHHHTT-C-B---
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH---HHHHHHHHHhhcc-ccccHHHHHHHHHHHc-C-C---
Confidence 78999999999999999877643222222211 1100000 0001111111111 1688899999999998 2 2
Q ss_pred chHHHHHHHH-HcCCCCCCCCCCchhHHHHHHHHHHHhCCcccccccCccEeEEE-EcHHHHHHH
Q 042863 273 SSVYLVQFWM-AQGLLHPLNENDELDDIGMRSLKQLCSRSFFHDLVRGFEMFTFK-MHDLIHDLA 335 (680)
Q Consensus 273 ~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~-~H~li~~~~ 335 (680)
+...+..... ..| ..........+++.|.+.+++.... + .|. .|++++++.
T Consensus 304 ~~~~l~~~~~~~~g-------~~~~~~~~~~~L~~L~~~gli~~~~--~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEG-------IEISDSEIYNYLTQLTKHSWIIKEG--E---KYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHC-------SCCCHHHHHHHHHHHHHTTSEEESS--S---CEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhCCCEEecC--C---EEEecCHHHHHhh
Confidence 3333332110 111 0112345667899999999987532 1 355 578888764
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=3.4e-17 Score=170.59 Aligned_cols=260 Identities=15% Similarity=0.047 Sum_probs=185.9
Q ss_pred CceeEEEEeccCcchhh---hHHHhhhcCCccEEEEecCCccc-------chHHHHHhhccCcceeEEEeCCCCccc---
Q 042863 355 KRVRHLSFVGANASRKD---FSRFLSDLGRVRTIFFSINDEKV-------SQSFVRSCISKSQFLRVLNLSGSAIEA--- 421 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~~~~L~~L~L~~~~~~~--- 421 (680)
+.++.+.+.++.+.... +...+..+++|+.|++++|.... ....+...+..+++|++|+|++|.++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 35888999888765543 33457789999999999864321 122333456899999999999999985
Q ss_pred --ccccccCcCCcceeccccccCCCcc----ChhhcCC---------CCCcEEecCCcccc-ccCc---ccccccCcccE
Q 042863 422 --LPKEIGNLKHMRYLDLSRNYKIKKL----PNAICEL---------QSLQTLNLEECLEL-EELP---KDIRYLVSLRV 482 (680)
Q Consensus 422 --~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~ 482 (680)
++..+..+++|++|++++|.+.... +..+..+ ++|++|++++|.+. ..+| ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 6677889999999999999764332 3333344 89999999999765 3444 46778999999
Q ss_pred EEeccccccc------cccccCcccccceeecccccCc----ccchhhccCCcccceeecccccCccc----CCccC--C
Q 042863 483 FEVTTKQKSL------QDSGIGCLVSLRCLIISHCRNL----EYLFDDIDQLRVLRSLLIAGCPCLIS----LPPAM--R 546 (680)
Q Consensus 483 L~l~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~--~ 546 (680)
|++++|.+.. .+..+..+++|+.|++++|... ..++..+..+++|+.|++++|.+... ++..+ +
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999872 2337788999999999998853 56788889999999999999987653 55655 4
Q ss_pred CCCCcCeEeecCCCCccccccccccCCCCcCccc-CCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccC
Q 042863 547 YLSSLETLMFVECESLSLNLSMQLEGEGSHQASN-TTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNC 623 (680)
Q Consensus 547 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 623 (680)
.+++|++|++++|..-... ...++... ..+++|+.|++++|+. +.....+. .....+++++.+++...
T Consensus 272 ~~~~L~~L~L~~n~i~~~g-------~~~l~~~l~~~l~~L~~L~l~~N~l-~~~~~~~~-~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDA-------VRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVD-EIREVFSTRGRGELDEL 340 (386)
T ss_dssp SSCCCCEEECCSSCCBHHH-------HHHHHHHHHHHCTTCCEEECTTSBS-CTTSHHHH-HHHHHHHHHTCCEECCC
T ss_pred cCCCeEEEECcCCcCCHHH-------HHHHHHHHHhcCCCceEEEccCCcC-CcchhHHH-HHHHHhhhcCcchhhhc
Confidence 4899999999998632200 00122222 4579999999999974 33332111 11224566665666543
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=1.5e-16 Score=175.90 Aligned_cols=288 Identities=13% Similarity=0.021 Sum_probs=142.0
Q ss_pred ceeEEEEeccCcchhhhHHHhhhcCC-ccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccc-----ccccccCc
Q 042863 356 RVRHLSFVGANASRKDFSRFLSDLGR-VRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEA-----LPKEIGNL 429 (680)
Q Consensus 356 ~~~~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~l 429 (680)
.++.+.+.++.............++. |++|++++|. ......+.....+|++|++|+|++|.++. ++..+.++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 45666666554443333322222444 6666666553 22333344444566666666666665542 22233455
Q ss_pred CCcceeccccccCC----CccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEe--------------------
Q 042863 430 KHMRYLDLSRNYKI----KKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEV-------------------- 485 (680)
Q Consensus 430 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l-------------------- 485 (680)
++|++|++++|... ..++..+..+++|+.|++++|... .+|..+..+++|+.|++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 66666666655433 123333445666666666665332 24444444455555544
Q ss_pred -------ccccccccccccCcccccceeecccccCccc-chhhccCCcccceeecccccCcccCCccCCCCCCcCeEeec
Q 042863 486 -------TTKQKSLQDSGIGCLVSLRCLIISHCRNLEY-LFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFV 557 (680)
Q Consensus 486 -------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 557 (680)
+++.....+..+..+++|+.|++++|..... +...+..+++|+.|+++++.....++..+..+++|++|+++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 4433333444555677777777777762211 22335667777777776432222344444567777777777
Q ss_pred C----------CCCcccccccc----ccCCCC------------cCcccCCCCcccceeccc---ccCCcccchh-hhhh
Q 042863 558 E----------CESLSLNLSMQ----LEGEGS------------HQASNTTRPHLRKLLIGQ---VTPLLELPQW-LLQE 607 (680)
Q Consensus 558 ~----------~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~L~~L~l~~---~~~l~~~~~~-~~~~ 607 (680)
+ |..++...... ...... .......+++|+.|++++ |..++..|.. -...
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 4 44443210000 000000 001112255666666653 3344433211 0112
Q ss_pred hcccCCccceeeeccCCC-CC-----CCCcCCCCCCeEEEcCCc
Q 042863 608 SLRNFQALEGLVIGNCPK-LL-----SLPEDMLHLKTLRIRGCP 645 (680)
Q Consensus 608 ~l~~~~~L~~L~l~~~~~-~~-----~l~~~~~~L~~l~l~~c~ 645 (680)
.+..|++|+.|++++|.. ++ .+...+++|+.|++++|.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 234567777777765542 11 223356777777777774
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=5.2e-15 Score=143.95 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=82.6
Q ss_pred ceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecc
Q 042863 408 FLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTT 487 (680)
Q Consensus 408 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 487 (680)
..+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45556666666665555443 4566666666654444444555666666666666554444444455666666666666
Q ss_pred ccccccc-cccCcccccceeecccccCcccchh-hccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 488 KQKSLQD-SGIGCLVSLRCLIISHCRNLEYLFD-DIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 488 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
|.+...+ ..+..+++|+.|++++|. ++.+++ .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 6655543 334555666666666553 233332 24555666666666665443333345556666666666553
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=6.7e-17 Score=166.55 Aligned_cols=249 Identities=12% Similarity=0.073 Sum_probs=169.3
Q ss_pred hhHHHhhhcCCccEEEEecCCccc-chHHHHHhhccCc-ceeEEEeCCCCcccc-cccccCc-----CCcceeccccccC
Q 042863 371 DFSRFLSDLGRVRTIFFSINDEKV-SQSFVRSCISKSQ-FLRVLNLSGSAIEAL-PKEIGNL-----KHMRYLDLSRNYK 442 (680)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~l-----~~L~~L~l~~~~~ 442 (680)
..+.++...++|+.|++++|.... ....+...+..++ +|++|+|++|.++.. +..+..+ ++|++|++++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 455666666779999999987432 2233446678888 899999999999844 4445543 8999999999975
Q ss_pred CCccChh----hcCC-CCCcEEecCCccccccCccccc----c-cCcccEEEecccccccc-----ccccCccc-cccee
Q 042863 443 IKKLPNA----ICEL-QSLQTLNLEECLELEELPKDIR----Y-LVSLRVFEVTTKQKSLQ-----DSGIGCLV-SLRCL 506 (680)
Q Consensus 443 ~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~~-----~~~l~~l~-~L~~L 506 (680)
....+.. +..+ ++|++|++++|......+..+. . .++|++|++++|.++.. +..+..++ +|+.|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 5554443 4445 8999999999976655444433 3 36899999999988743 33344454 89999
Q ss_pred ecccccCcccch----hhccCC-cccceeecccccCccc----CCccCCC-CCCcCeEeecCCCCccccccccccCCCCc
Q 042863 507 IISHCRNLEYLF----DDIDQL-RVLRSLLIAGCPCLIS----LPPAMRY-LSSLETLMFVECESLSLNLSMQLEGEGSH 576 (680)
Q Consensus 507 ~l~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 576 (680)
++++|......+ ..+..+ ++|+.|++++|.+... ++..+.. .++|++|++++|..-... ...+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------~~~l 245 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS-------LENL 245 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC-------HHHH
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH-------HHHH
Confidence 999987444333 244455 5999999999986542 4445544 469999999998522210 1122
Q ss_pred CcccCCCCcccceecccccCCcccchh---hhhhhcccCCccceeeeccCCCCC
Q 042863 577 QASNTTRPHLRKLLIGQVTPLLELPQW---LLQESLRNFQALEGLVIGNCPKLL 627 (680)
Q Consensus 577 ~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~ 627 (680)
......+++|+.|++++|. +..+... .....+..+++|+.|++++|+.-.
T Consensus 246 ~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3345667889999999985 2233222 122356688899999999997533
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1.2e-16 Score=164.80 Aligned_cols=238 Identities=14% Similarity=0.015 Sum_probs=127.2
Q ss_pred CCceeEEEEeccCcchhhh---HHHhhhcC-CccEEEEecCCcccc-hHHHHHhhccC-cceeEEEeCCCCccccc-cc-
Q 042863 354 PKRVRHLSFVGANASRKDF---SRFLSDLG-RVRTIFFSINDEKVS-QSFVRSCISKS-QFLRVLNLSGSAIEALP-KE- 425 (680)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~~~~-~~L~~L~L~~~~~~~~~-~~- 425 (680)
+..++.+.+.++.+..... ...+..++ +|+.|++++|..... ...+...+... ++|++|+|++|.++... ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3446777777666443322 24556666 677777777653321 22333333443 77777777777776332 21
Q ss_pred ---ccCc-CCcceeccccccCCCccChh----hcC-CCCCcEEecCCcccccc----CcccccccC-cccEEEecccccc
Q 042863 426 ---IGNL-KHMRYLDLSRNYKIKKLPNA----ICE-LQSLQTLNLEECLELEE----LPKDIRYLV-SLRVFEVTTKQKS 491 (680)
Q Consensus 426 ---~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~ 491 (680)
+..+ ++|++|++++|......+.. +.. .++|++|++++|..... ++..+..++ +|+.|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3334 67777777777544333322 223 24677777777755532 223334444 6777777777765
Q ss_pred cccc-----ccCcc-cccceeecccccCcc----cchhhccC-CcccceeecccccCcccC----CccCCCCCCcCeEee
Q 042863 492 LQDS-----GIGCL-VSLRCLIISHCRNLE----YLFDDIDQ-LRVLRSLLIAGCPCLISL----PPAMRYLSSLETLMF 556 (680)
Q Consensus 492 ~~~~-----~l~~l-~~L~~L~l~~~~~~~----~~~~~~~~-l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l 556 (680)
.... .+..+ ++|+.|++++|.... .++..+.. .++|+.|++++|.+.... ...+..+++|++|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 5421 22333 477777777765322 14444444 347777777777654422 233456677777777
Q ss_pred cCCCCccccccccccCCCCcCcccCCCCcccceeccccc
Q 042863 557 VECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVT 595 (680)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 595 (680)
++|..-... ......+......+++|+.|++++|+
T Consensus 261 ~~n~l~~i~----~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 261 DYDIVKNMS----KEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EHHHHTTCC----HHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ccCCccccC----HHHHHHHHHHhccCCceEEEecCCCc
Confidence 776410000 00011122234456667777777765
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=2.7e-15 Score=139.95 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=101.1
Q ss_pred ccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEE
Q 042863 404 SKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVF 483 (680)
Q Consensus 404 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 483 (680)
..+++|+.|++++|.++.++ .+..+++|++|++++| ....++ .+..+++|++|++++|......|..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34566777777777777666 5667777777777777 333333 46677777777777776655566667777777777
Q ss_pred Eeccccccc-cccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 484 EVTTKQKSL-QDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 484 ~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
++++|.+.. .+..+..+++|+.|++++|..++.++ .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 777777665 34556667777777777766555564 46667777777777776543 33 46667777777777764
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=3.2e-16 Score=173.43 Aligned_cols=274 Identities=15% Similarity=0.140 Sum_probs=163.0
Q ss_pred CceeEEEEeccCcchhhhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccc-----ccccccCc
Q 042863 355 KRVRHLSFVGANASRKDFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEA-----LPKEIGNL 429 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~l 429 (680)
+.++++.+.++.........+...+++|++|++++|. ......+...+.++++|++|+|++|.++. ++.....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 3688899998877666665555579999999999873 23444466667789999999999998763 33334578
Q ss_pred CCcceecccccc-CC--CccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccc-------cccccccC-
Q 042863 430 KHMRYLDLSRNY-KI--KKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQK-------SLQDSGIG- 498 (680)
Q Consensus 430 ~~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------~~~~~~l~- 498 (680)
++|+.|++++|. .. ..++..+..+++|+.|++++|...+.+|..+..+++|+.|.++.+.. ...+..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 899999999885 11 11223335589999999999866666777788888899988654421 11111222
Q ss_pred -----------------------cccccceeecccccCccc--chhhccCCcccceeecccccCcccCCccCCCCCCcCe
Q 042863 499 -----------------------CLVSLRCLIISHCRNLEY--LFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLET 553 (680)
Q Consensus 499 -----------------------~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 553 (680)
.+++|+.|++++|. ++. +...+..+++|+.|++++|.....++.....+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 34556666666655 221 2222445566666666655111122222334566666
Q ss_pred EeecCCC--------CccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeec----
Q 042863 554 LMFVECE--------SLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIG---- 621 (680)
Q Consensus 554 L~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~---- 621 (680)
|++++|. .++. .........+++|+.|.+. |..++... .......+++|+.|+++
T Consensus 343 L~L~~~~~~g~~~~~~l~~---------~~l~~l~~~~~~L~~L~~~-~~~l~~~~---~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTE---------QGLVSVSMGCPKLESVLYF-CRQMTNAA---LITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp EEEECSCTTCSSCSSCCCH---------HHHHHHHHHCTTCCEEEEE-ESCCCHHH---HHHHHHHCTTCCEEEEEESST
T ss_pred EEEecCcccccccCCCCCH---------HHHHHHHHhchhHHHHHHh-cCCcCHHH---HHHHHhhCCCcceeEeecccC
Confidence 6664321 1110 0111122335677777443 33333221 11112357788888887
Q ss_pred -cCCCCCCCC---------cCCCCCCeEEEcC
Q 042863 622 -NCPKLLSLP---------EDMLHLKTLRIRG 643 (680)
Q Consensus 622 -~~~~~~~l~---------~~~~~L~~l~l~~ 643 (680)
+|..++..| ..+++|+.|++++
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 455555432 2467788888865
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=1.3e-14 Score=140.99 Aligned_cols=174 Identities=18% Similarity=0.142 Sum_probs=139.5
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
...+.++++++...... ..+ .+.|+.|+|++|.++.++. .+.++++|++|++++|.+....+..+..+++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p----~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP----SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCCSSCC----SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCCccccC----CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 34667777765432111 112 2589999999999996654 6889999999999999777766777889999999
Q ss_pred EecCCccccccCcccccccCcccEEEeccccccccccc-cCcccccceeecccccCcccchh-hccCCcccceeeccccc
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSG-IGCLVSLRCLIISHCRNLEYLFD-DIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 536 (680)
|++++|.+....+..+..+++|+.|++++|.+...+.. +..+++|+.|++++|. ++.+++ .+..+++|+.|++++|.
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence 99999876655556678999999999999999887554 6789999999999986 455554 68889999999999998
Q ss_pred CcccCCccCCCCCCcCeEeecCCC
Q 042863 537 CLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 537 ~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
+.+..+..+..+++|+.|++++|+
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCHHHHhCCCCCCEEEeeCCc
Confidence 876666678899999999999986
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.6e-14 Score=147.90 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=104.3
Q ss_pred cceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccCh-hhcCCCCCcEEe-cCCccccccCcccccccCcccEE
Q 042863 407 QFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPN-AICELQSLQTLN-LEECLELEELPKDIRYLVSLRVF 483 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~-l~~~~~~~~~~~~~~~l~~L~~L 483 (680)
+++++|+|++|.++.+|. .+.++++|++|+|++|...+.+|. .+..+++|+++. +..|......|..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345566666666665554 355566666666666554444433 234555554432 23333222223445555666666
Q ss_pred Eecccccccccc-ccCcccccceeecccccCcccchh-hccCC-cccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 484 EVTTKQKSLQDS-GIGCLVSLRCLIISHCRNLEYLFD-DIDQL-RVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 484 ~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
++++|.+...+. .+....++..|++.++..+..++. .+..+ ..++.|++++|.+. .++..+...++|++|.+.++.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence 666655554422 223344455555555544544443 22232 24555566555433 333333344455555555443
Q ss_pred CccccccccccCCCCcC-cccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc--CCCCCC
Q 042863 561 SLSLNLSMQLEGEGSHQ-ASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE--DMLHLK 637 (680)
Q Consensus 561 ~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~--~~~~L~ 637 (680)
.+. .++ ..+..+++|+.|++++| .++.+|.. .+.+|++|.+.+|..++.+|. .+++|+
T Consensus 189 ~l~-----------~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~-------~~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 189 NLE-----------ELPNDVFHGASGPVILDISRT-RIHSLPSY-------GLENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp TCC-----------CCCTTTTTTEECCSEEECTTS-CCCCCCSS-------SCTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred ccc-----------CCCHHHhccCcccchhhcCCC-CcCccChh-------hhccchHhhhccCCCcCcCCCchhCcChh
Confidence 222 111 22344555666666655 35555532 344555555555555555553 445555
Q ss_pred eEEEc
Q 042863 638 TLRIR 642 (680)
Q Consensus 638 ~l~l~ 642 (680)
.+++.
T Consensus 250 ~l~l~ 254 (350)
T 4ay9_X 250 EASLT 254 (350)
T ss_dssp EEECS
T ss_pred hCcCC
Confidence 55543
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=2.3e-14 Score=146.71 Aligned_cols=236 Identities=17% Similarity=0.113 Sum_probs=174.7
Q ss_pred eEEEeCCCCcccccccccCcCCcceeccccccCCCccCh-hhcCCCCCcEEecCCccccccCcc-cccccCcccE-EEec
Q 042863 410 RVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPN-AICELQSLQTLNLEECLELEELPK-DIRYLVSLRV-FEVT 486 (680)
Q Consensus 410 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~-L~l~ 486 (680)
+.++.++++++++|..+ .+++++|++++|. +..+|. .|.++++|++|+|++|...+.+|. .+.++++|+. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888999999866 4689999999995 556664 588999999999999987777765 4678888775 5556
Q ss_pred ccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCc-cCCCC-CCcCeEeecCCCCcc
Q 042863 487 TKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPP-AMRYL-SSLETLMFVECESLS 563 (680)
Q Consensus 487 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~ 563 (680)
.|++..+ +..+..+++|+.|++++|......+..+....++..+++.++.....++. .+..+ ..++.|++++|..-
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 6788877 56788999999999999864332233444566778888877655555543 34444 46889999998532
Q ss_pred ccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc-CCCCCCeEEEc
Q 042863 564 LNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE-DMLHLKTLRIR 642 (680)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~-~~~~L~~l~l~ 642 (680)
.++......++|++|.+.++..++.+|.. .++.+++|+.|++++|. ++.+|. .+.+|+.|.+.
T Consensus 168 -----------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~----~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 168 -----------EIHNSAFNGTQLDELNLSDNNNLEELPND----VFHGASGPVILDISRTR-IHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp -----------EECTTSSTTEEEEEEECTTCTTCCCCCTT----TTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECT
T ss_pred -----------CCChhhccccchhHHhhccCCcccCCCHH----HhccCcccchhhcCCCC-cCccChhhhccchHhhhc
Confidence 23334445678999999988889999864 34589999999999995 778876 58899999999
Q ss_pred CCcccccccCCCCCCCCccccccceeEec
Q 042863 643 GCPALSDRCKPLTGEDWHKIAHVAHIKLD 671 (680)
Q Consensus 643 ~c~~l~~~~~~~~~~~~~~~~~l~~~~~~ 671 (680)
+|..++.. . ....+.+|..+++.
T Consensus 232 ~~~~l~~l----P--~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 232 STYNLKKL----P--TLEKLVALMEASLT 254 (350)
T ss_dssp TCTTCCCC----C--CTTTCCSCCEEECS
T ss_pred cCCCcCcC----C--CchhCcChhhCcCC
Confidence 99776542 1 23445566666543
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=1.7e-14 Score=155.46 Aligned_cols=189 Identities=18% Similarity=0.202 Sum_probs=128.4
Q ss_pred cceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEec
Q 042863 407 QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVT 486 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 486 (680)
.+|+.|++++|.++.+|..+ +++|++|++++|.+ ..+| ..+++|++|++++|.+.+ +|. +.. +|+.|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 37888888888888777655 37788888888853 4666 457788888888875544 776 544 78888888
Q ss_pred cccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccc
Q 042863 487 TKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNL 566 (680)
Q Consensus 487 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 566 (680)
+|.++.++. .+++|+.|++++|. ++.+|. .+++|+.|++++|.+.+ +|. +. ++|+.|++++|..-..+
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp- 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP- 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC-
T ss_pred CCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh-
Confidence 888877665 57788888888876 444665 56788888888887654 666 54 78888888887422211
Q ss_pred cccccCCCCcC-cccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc
Q 042863 567 SMQLEGEGSHQ-ASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE 631 (680)
Q Consensus 567 ~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~ 631 (680)
. +. ......+.|+.|++++| .++.+|..+. .+++|+.|++++|+....+|.
T Consensus 197 -----~---~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~-----~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 197 -----A---VPVRNHHSEETEIFFRCREN-RITHIPENIL-----SLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -----C---CC--------CCEEEECCSS-CCCCCCGGGG-----GSCTTEEEECCSSSCCHHHHH
T ss_pred -----h---HHHhhhcccccceEEecCCC-cceecCHHHh-----cCCCCCEEEeeCCcCCCcCHH
Confidence 0 00 11122233488888887 4677886544 688888888888876554443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.9e-14 Score=134.33 Aligned_cols=173 Identities=20% Similarity=0.102 Sum_probs=118.3
Q ss_pred eeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccc
Q 042863 409 LRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTK 488 (680)
Q Consensus 409 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 488 (680)
-+.++.+++.++.+|..+ .++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356677777777776544 457888888888655444445677888888888887555333344577888888888888
Q ss_pred ccccccc-ccCcccccceeecccccCcccchh-hccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccc
Q 042863 489 QKSLQDS-GIGCLVSLRCLIISHCRNLEYLFD-DIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNL 566 (680)
Q Consensus 489 ~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 566 (680)
.+...+. .+..+++|+.|++++|.. +.++. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~----- 160 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW----- 160 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-----
Confidence 8776644 356778888888887653 34433 467788888888888876654555577788888888888742
Q ss_pred cccccCCCCcCcccCCCCcccceecccccCCcccch
Q 042863 567 SMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQ 602 (680)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 602 (680)
...+++|+.|+++.+.....+|.
T Consensus 161 -------------~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 161 -------------DCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -------------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred -------------ecCCCCHHHHHHHHHhCCceeec
Confidence 13456677777776665556664
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=1.8e-13 Score=142.63 Aligned_cols=303 Identities=11% Similarity=0.037 Sum_probs=187.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
|+||+++++.+.+++.....+..+..+.++|+|++|+|||++++.++. ..... -..++|+++....+...++..++.
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 689999999999999763211222334899999999999999999987 33333 235778888887788888889888
Q ss_pred HhcCCCC-CCcCHHHHHHHHHHHhC--CceEEEEEecCCCCChhHHHHHHHhcCCCC----CCCEEEEecCchHHHHhhc
Q 042863 80 SITGQNQ-GDLDIEQLQRILRVCLN--GKRYLLVMDDVWNEDPKVWDKLKSLLSGGA----KGSKILVTTRSNKVASVMG 152 (680)
Q Consensus 80 ~l~~~~~-~~~~~~~~~~~~~~~l~--~~~~llvlD~~~~~~~~~~~~l~~~l~~~~----~~~~iiiTsR~~~~~~~~~ 152 (680)
.++.... ...+...+...+...+. +++.+||+|+++..+......+...+.... .+..+|++|+.........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 8865432 23345566666655553 567899999998887777777777765432 3667888877654322211
Q ss_pred ----cCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhh---------CCChhHHHHHHhhhcc---
Q 042863 153 ----TRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKC---------GGIPLAVRTLGSLLYC--- 216 (680)
Q Consensus 153 ----~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Pl~l~~~~~~l~~--- 216 (680)
..-....+.+++++.++..+++...+...... ....++.+..+++.+ +|+|..+..+......
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 00112369999999999999999887431100 112236678899999 7998755554433210
Q ss_pred --CC---ChhhHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCC---CCeeechHHHHHHHHHcCCCC
Q 042863 217 --ST---DEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFP---KDYQFSSVYLVQFWMAQGLLH 288 (680)
Q Consensus 217 --~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~---~~~~~~~~~l~~~w~~~g~~~ 288 (680)
.. ........... .....+...+..|++.++.++..++.+. .+..+....+...+... ..
T Consensus 256 ~~~~~~i~~~~v~~~~~~----------~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~--~~ 323 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKE----------VLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV--CE 323 (389)
T ss_dssp HTTCSSCCHHHHHHHHHH----------HSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH--HH
T ss_pred HhCCCCcCHHHHHHHHHH----------HhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH--HH
Confidence 11 11111111111 0122334446678888888888777653 22134444444322210 00
Q ss_pred CCCCCCchhHHHHHHHHHHHhCCccccccc
Q 042863 289 PLNENDELDDIGMRSLKQLCSRSFFHDLVR 318 (680)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 318 (680)
..............++..|...+++.....
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 000111234557788999999999987543
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=2.6e-14 Score=142.03 Aligned_cols=169 Identities=20% Similarity=0.268 Sum_probs=107.2
Q ss_pred hhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCC
Q 042863 377 SDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456 (680)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (680)
..+++|+.|++++|..... ..+..+++|++|++++|.++.++. +.++++|++|++++|. ...++. +..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTC
T ss_pred hhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCC
Confidence 3456677777766643221 125667777777777777776655 6777777777777774 333443 6677777
Q ss_pred cEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeeccccc
Q 042863 457 QTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 536 (680)
++|++++|.... + ..+..+++|+.|++++|.+... ..+..+++|+.|++++|. ++.+++ +..+++|+.|++++|.
T Consensus 115 ~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCc
Confidence 777777764333 3 3566677777777777776665 456667777777777664 334443 6667777777777765
Q ss_pred CcccCCccCCCCCCcCeEeecCCC
Q 042863 537 CLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 537 ~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
+. .++. +..+++|+.|++++|+
T Consensus 190 i~-~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 190 IS-DLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CC-BCGG-GTTCTTCSEEEEEEEE
T ss_pred CC-CChh-hccCCCCCEEECcCCc
Confidence 43 3333 5666777777776664
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.5e-14 Score=134.95 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=115.6
Q ss_pred hhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCC
Q 042863 377 SDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456 (680)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (680)
..+++|+.|++++|.... . + .+..+++|++|++++|.++.++ .+..+++|++|++++|......+..++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~---l-~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD---L-T-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSC---C-T-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccC---h-H-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 456778888888875431 1 1 3777888888888888776554 67788888888888887666667778888888
Q ss_pred cEEecCCccccccCcccccccCcccEEEecccc-ccccccccCcccccceeecccccCcccchhhccCCcccceeecccc
Q 042863 457 QTLNLEECLELEELPKDIRYLVSLRVFEVTTKQ-KSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGC 535 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 535 (680)
++|++++|......|..++.+++|+.|++++|. +...+ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCc
Confidence 888888887776677788888888888888887 65554 67788888899888876 44454 6778888999999888
Q ss_pred cC
Q 042863 536 PC 537 (680)
Q Consensus 536 ~~ 537 (680)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 64
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=3.2e-14 Score=141.34 Aligned_cols=170 Identities=17% Similarity=0.167 Sum_probs=119.4
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
+..+++|+.|++++|.++.++ .+..+++|++|++++|... .++. +..+++|++|++++|... .+| .+..+++|+.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCE
Confidence 346788899999998888775 3778888999999888544 4444 788888999998887543 344 4788888888
Q ss_pred EEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCc
Q 042863 483 FEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESL 562 (680)
Q Consensus 483 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 562 (680)
|++++|.+... ..+..+++|+.|++++|. ++.+ ..+..+++|+.|++++|.+.+. ++ +..+++|++|++++|..-
T Consensus 117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCC
Confidence 88888887776 456777888888888765 3444 5567778888888887765443 33 677777888877776421
Q ss_pred cccccccccCCCCcCcccCCCCcccceeccccc
Q 042863 563 SLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVT 595 (680)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 595 (680)
. ++ ....+++|+.|++++|+
T Consensus 192 ~------------l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 192 D------------LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp B------------CG-GGTTCTTCSEEEEEEEE
T ss_pred C------------Ch-hhccCCCCCEEECcCCc
Confidence 1 11 13455666666666664
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.55 E-value=2.7e-13 Score=141.18 Aligned_cols=296 Identities=14% Similarity=0.046 Sum_probs=178.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh---c-CCcEEEEEeCCcCCHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE---H-FELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 76 (680)
|+||+++++.+..++.... ..+..+.+.|+|++|+|||++|+.+++...... . -..++|+++....+...++..
T Consensus 21 ~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6899999999999986632 124456899999999999999999998422110 1 234678888888888889999
Q ss_pred HHHHhcCCCCC-CcCHHHHHHHHHHHh--CCceEEEEEecCCCCChh--HHHHHHHh---cCCC--CCCCEEEEecCchH
Q 042863 77 IIKSITGQNQG-DLDIEQLQRILRVCL--NGKRYLLVMDDVWNEDPK--VWDKLKSL---LSGG--AKGSKILVTTRSNK 146 (680)
Q Consensus 77 ~~~~l~~~~~~-~~~~~~~~~~~~~~l--~~~~~llvlD~~~~~~~~--~~~~l~~~---l~~~--~~~~~iiiTsR~~~ 146 (680)
++..++..... ..+..++...+.+.+ .+++.+||+||++..... ..+.+..+ .... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99998754332 234566666666666 345889999999764322 22333332 2221 44667777777652
Q ss_pred HH----HhhccCCCCCceeCCCCChhhHHHHHHHHhcc--cCCCCCchHHHHHHHHHHhhC---CChhHHHHHHhhhc--
Q 042863 147 VA----SVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFK--EERDKHPNLVKIGEEIVKKCG---GIPLAVRTLGSLLY-- 215 (680)
Q Consensus 147 ~~----~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Pl~l~~~~~~l~-- 215 (680)
.. ......-....+.+++++.++..+++...+.. .....++ +.+..+++.++ |+|..+..+.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 11 11111111246899999999999999988643 1122222 45577888888 99954333322221
Q ss_pred ----c--CCChhhHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhh-cCCCCeeechHHHHHHH----HHc
Q 042863 216 ----C--STDEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCC-IFPKDYQFSSVYLVQFW----MAQ 284 (680)
Q Consensus 216 ----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~-~f~~~~~~~~~~l~~~w----~~~ 284 (680)
+ .-....+....... ....+..++..|++.++..+..++ .+.....+....+.+.. -..
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 0 11233333322211 122355567889999888887777 44322234444333221 111
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHhCCcccccc
Q 042863 285 GLLHPLNENDELDDIGMRSLKQLCSRSFFHDLV 317 (680)
Q Consensus 285 g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 317 (680)
| . ...........+..|...|++....
T Consensus 326 ~-~-----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 326 G-L-----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp T-C-----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred C-C-----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 2 1 1223456778899999999988643
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=1.5e-15 Score=167.99 Aligned_cols=280 Identities=14% Similarity=0.073 Sum_probs=160.9
Q ss_pred CceeEEEEeccCcch-h-------------hhHHHhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCC-Cc
Q 042863 355 KRVRHLSFVGANASR-K-------------DFSRFLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGS-AI 419 (680)
Q Consensus 355 ~~~~~l~~~~~~~~~-~-------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~ 419 (680)
+.++.+.+.++.... . .+......+++|+.|+++++. ..+..+......+++|++|+|++| .+
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV--VTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB--CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE--EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 357788887754111 1 123445678899999998875 344444444446889999999988 55
Q ss_pred cc--ccccccCcCCcceeccccccCCCcc----ChhhcCCCCCcEEecCCcc--cc-ccCcccccccCcccEEEeccc-c
Q 042863 420 EA--LPKEIGNLKHMRYLDLSRNYKIKKL----PNAICELQSLQTLNLEECL--EL-EELPKDIRYLVSLRVFEVTTK-Q 489 (680)
Q Consensus 420 ~~--~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~-~ 489 (680)
+. ++..+.++++|++|++++|...... +.....+++|+.|++++|. .. ..++..+..+++|+.|++++| .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 53 4555567899999999988644332 2223367789999998875 11 112222355788999999887 3
Q ss_pred ccccccccCcccccceeecccccC------cccchhhc------------------------cCCcccceeecccccCcc
Q 042863 490 KSLQDSGIGCLVSLRCLIISHCRN------LEYLFDDI------------------------DQLRVLRSLLIAGCPCLI 539 (680)
Q Consensus 490 ~~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~~------------------------~~l~~L~~L~l~~~~~~~ 539 (680)
+...+..+..+++|+.|.++.+.. +..++..+ ..+++|+.|++++|.+..
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 444455667788888888655421 11122222 234566666666665322
Q ss_pred c-CCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceeccccc-----CCcccchhhhhhhcccCC
Q 042863 540 S-LPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVT-----PLLELPQWLLQESLRNFQ 613 (680)
Q Consensus 540 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~l~~~~ 613 (680)
. +...+.++++|++|++++| +.. ..+......+++|++|++.+|. ....+.+.........++
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~--~~~---------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY--IED---------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG--GHH---------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCcCEEeCcCc--cCH---------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 1 2223445666666666655 110 1111222346777777774321 001222211112223578
Q ss_pred ccceeeeccCCCCCC-----CCcCCCCCCeEEEc-----CCcccc
Q 042863 614 ALEGLVIGNCPKLLS-----LPEDMLHLKTLRIR-----GCPALS 648 (680)
Q Consensus 614 ~L~~L~l~~~~~~~~-----l~~~~~~L~~l~l~-----~c~~l~ 648 (680)
+|+.|.++++. ++. +...+++|+.|++. +|..++
T Consensus 373 ~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 373 KLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp TCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred hHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 88888665443 331 22357899999998 676665
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=3.9e-14 Score=154.45 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=63.5
Q ss_pred CcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEe
Q 042863 406 SQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEV 485 (680)
Q Consensus 406 ~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 485 (680)
+++|+.|++++|.+..++ .+..|++|+.|+|++|.+. .++. +..+++|+.|+|++|.+. .+| .+..+++|+.|++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEe
Confidence 344444455544444443 2444445555555444322 2222 444445555555544322 222 3444444555555
Q ss_pred ccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCC
Q 042863 486 TTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVEC 559 (680)
Q Consensus 486 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (680)
++|.+..+ +.+..+++|+.|++++|. ++.+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 117 s~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTSCCCCC-GGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred cCCCCCCC-ccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 44444443 224444455555554443 2222 334444555555555544332222 444555555555554
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=7.4e-14 Score=132.47 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=117.5
Q ss_pred eEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccc
Q 042863 410 RVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQ 489 (680)
Q Consensus 410 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 489 (680)
+.++++++.++.+|..+. ++|+.|++++|.+....+..+..+++|++|+|++|.+....|..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888877654 688888888886554445567888888999998887766667788888889999998888
Q ss_pred ccccccc-cCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 490 KSLQDSG-IGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 490 ~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
++.++.. +..+++|+.|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 8877544 5778888999988877544446678888899999999888776666678888899999998886
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=4.4e-14 Score=154.05 Aligned_cols=169 Identities=21% Similarity=0.245 Sum_probs=103.9
Q ss_pred hhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCC
Q 042863 377 SDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSL 456 (680)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 456 (680)
..+++|+.|++++|...... .+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.+ ..+| .+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTC
T ss_pred hcCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCC
Confidence 34566666666665432211 35667777777777777766554 66677777777776643 3334 36667777
Q ss_pred cEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeeccccc
Q 042863 457 QTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 457 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 536 (680)
+.|+|++|.+.. + ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.. ..+++ +..+++|+.|+|++|.
T Consensus 112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC-CCchh-hccCCCCCEEECcCCC
Confidence 777777665432 3 3466667777777777766665 4566667777777776653 33333 6667777777777765
Q ss_pred CcccCCccCCCCCCcCeEeecCCC
Q 042863 537 CLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 537 ~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
+.. ++ .+..+++|+.|+|++|.
T Consensus 187 i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 187 ISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCB-CG-GGTTCTTCSEEECCSEE
T ss_pred CCC-Ch-HHccCCCCCEEEccCCc
Confidence 543 33 36666777777777664
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.3e-13 Score=131.85 Aligned_cols=149 Identities=23% Similarity=0.185 Sum_probs=116.3
Q ss_pred ceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCc-ccccccCcccEEEec
Q 042863 408 FLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELP-KDIRYLVSLRVFEVT 486 (680)
Q Consensus 408 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 486 (680)
..+.++.+++.++.+|..+. ++|++|++++|.+....|..+..+++|++|+|++|.+ ..+| ..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECC
Confidence 35678888888888877554 7888899988876666677788888899999988865 4444 446788888999998
Q ss_pred ccccccccc-ccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 487 TKQKSLQDS-GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 487 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
+|.++..+. .+..+++|+.|++++|. ++.+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 888887744 45778888888888866 55788888888889999998887765555667888888888888875
No 116
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=3.3e-13 Score=140.28 Aligned_cols=292 Identities=13% Similarity=0.040 Sum_probs=176.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh----c--CCcEEEEEeCCcC-CHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE----H--FELKIWICISEDF-GERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~--~~~~~~~~~~~~~-~~~~~ 73 (680)
|+||+++++.+.+.+.... .++.++.+.|+|++|+|||++|+.+++...... . ...++|+++.... +...+
T Consensus 22 l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6899999999998887532 123456899999999999999999998422111 0 3457788887766 78888
Q ss_pred HHHHHHHhcCCC--CCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhH-HHH-HHHhcCCCCCCCEEEEecCchHH--
Q 042863 74 MTKIIKSITGQN--QGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKV-WDK-LKSLLSGGAKGSKILVTTRSNKV-- 147 (680)
Q Consensus 74 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~-~~~-l~~~l~~~~~~~~iiiTsR~~~~-- 147 (680)
+..++.++.... ....+.......+.+.++..+.+||+||++...... .+. +..++... .+..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 888888884322 122334566677777777666699999996532211 122 22222222 57778888886521
Q ss_pred --HHhhccCCCCCceeCCCCChhhHHHHHHHHhcc--cCCCCCchHHHHHHHHHHhhC---CChh-HHHHHHhhh--cc-
Q 042863 148 --ASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFK--EERDKHPNLVKIGEEIVKKCG---GIPL-AVRTLGSLL--YC- 216 (680)
Q Consensus 148 --~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Pl-~l~~~~~~l--~~- 216 (680)
......... ..+.+++++.++..+++...+.. .....++ +.+..+++.++ |+|. ++..+-... ..
T Consensus 179 ~l~~~l~sr~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 179 YMEPRVLSSLG-PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TSCHHHHHTCC-CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhCHHHHhcCC-CeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111111111 37999999999999999988642 1122223 45677888887 9887 333332222 11
Q ss_pred --CCChhhHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCCCC-eeechHHHHHHHHHcCCCCCCCCC
Q 042863 217 --STDEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFPKD-YQFSSVYLVQFWMAQGLLHPLNEN 293 (680)
Q Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~~-~~~~~~~l~~~w~~~g~~~~~~~~ 293 (680)
.-..+.+....... ....+..++..|++.++.++..++. ... -.+. .......-..| ..
T Consensus 255 ~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g------~~ 316 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK------QK 316 (384)
T ss_dssp SSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT------CC
T ss_pred CCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC------CC
Confidence 12333443332211 1134556678889888888888776 211 0110 11111111112 11
Q ss_pred CchhHHHHHHHHHHHhCCcccccc
Q 042863 294 DELDDIGMRSLKQLCSRSFFHDLV 317 (680)
Q Consensus 294 ~~~~~~~~~~l~~L~~~sll~~~~ 317 (680)
.........++..|...+++....
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 223456778899999999988643
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=3.8e-14 Score=133.50 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=103.0
Q ss_pred CCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccccc-ccCcCCcceeccccccCCCccChhhcCCCCCcE
Q 042863 380 GRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKE-IGNLKHMRYLDLSRNYKIKKLPNAICELQSLQT 458 (680)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 458 (680)
++|+.|++++|... ...+..+..+++|++|++++|.++.++.. +.++++|++|++++|.+....+..+..+++|++
T Consensus 28 ~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCccC---cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 46777777776532 22333466777777777777777766543 466777777777777544433444567777777
Q ss_pred EecCCccccccCcccccccCcccEEEecccccccccc-ccCcccccceeecccccCcccchhhccCCcccceeecccccC
Q 042863 459 LNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDS-GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 459 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 537 (680)
|++++|.+....+..+..+++|+.|++++|.++..+. .+..+++|+.|++++|.. .+.+++|+.|+++.|.+
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKH 177 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHHHC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHHHhC
Confidence 7777765544333446677777777777777766644 356677777777777642 23456677777777777
Q ss_pred cccCCccCCCCCC
Q 042863 538 LISLPPAMRYLSS 550 (680)
Q Consensus 538 ~~~~~~~~~~~~~ 550 (680)
.+.+|..++.++.
T Consensus 178 ~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 178 SGVVRNSAGSVAP 190 (208)
T ss_dssp TTTBBCTTSSBCT
T ss_pred CceeeccCccccC
Confidence 7777766655544
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=130.05 Aligned_cols=149 Identities=17% Similarity=0.111 Sum_probs=104.6
Q ss_pred eEEEeCCCCcccccccccCcCCcceeccccccCCCccC-hhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccc
Q 042863 410 RVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLP-NAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTK 488 (680)
Q Consensus 410 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 488 (680)
+.++++++.++.+|..+. +.+++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777777777776543 345777787775444323 33667777888888777655544556777777888888877
Q ss_pred ccccccc-ccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 489 QKSLQDS-GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 489 ~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
.++..+. .+..+++|+.|++++|......+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 7776643 46677788888887776544446667778888888888887766667777788888888888775
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.4e-13 Score=148.26 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=143.1
Q ss_pred hcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCc
Q 042863 378 DLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQ 457 (680)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 457 (680)
.+.+|+.|++++|.... ++..+ +++|++|+|++|.++.+| ..+++|++|++++|.+.+ +|. +.. +|+
T Consensus 57 ~~~~L~~L~Ls~n~L~~----lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 57 LINQFSELQLNRLNLSS----LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp HHTTCSEEECCSSCCSC----CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred ccCCccEEEeCCCCCCc----cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence 34589999999876432 22222 478999999999999888 568999999999996544 777 554 899
Q ss_pred EEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccC
Q 042863 458 TLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 458 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 537 (680)
+|++++|.+.+ +|. .+++|+.|++++|.++.++. .+++|+.|++++|. ++.+|. +. ++|+.|++++|.+
T Consensus 124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCC
T ss_pred EEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCC
Confidence 99999986554 777 68899999999999988765 57899999999986 455777 55 8999999999976
Q ss_pred cccCCccCCCCCCc-------CeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhh
Q 042863 538 LISLPPAMRYLSSL-------ETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLL 605 (680)
Q Consensus 538 ~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 605 (680)
. .+|. +.. +| +.|++++|..- .++.....+++|+.|++++|+....+|..+.
T Consensus 193 ~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 193 E-SLPA-VPV--RNHHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp S-SCCC-CC----------CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred C-chhh-HHH--hhhcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 5 6676 543 77 99999998522 3344455589999999999976666665544
No 120
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.46 E-value=1.4e-12 Score=126.35 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=121.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+||+++++.+...+... ...+.+.|+|++|+|||++|+.+++.. ...+... ...+.. . .....+...
T Consensus 25 ~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~--~~~~~~~-~~~~~~---~-~~~~~~~~~ 92 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGL--NCETGIT-ATPCGV---C-DNCREIEQG 92 (250)
T ss_dssp CCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHH--HCTTCSC-SSCCSC---S-HHHHHHHTT
T ss_pred HhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCC-CCCCcc---c-HHHHHHhcc
Confidence 689999999999999762 223589999999999999999998732 2211100 000000 0 000000000
Q ss_pred hcCC-----CCCCcCHHHHHHHHHHH----hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHH-HHh
Q 042863 81 ITGQ-----NQGDLDIEQLQRILRVC----LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKV-ASV 150 (680)
Q Consensus 81 l~~~-----~~~~~~~~~~~~~~~~~----l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~-~~~ 150 (680)
.... .......+.....+... ..+++.+||+||++..+...++.+...+.....+..+|+||+.... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 00001111111111111 1345789999999887777778887777766667788888876531 111
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
.. .+...+.+++++.++..+++...+.......+ ++.+..|++.++|+|..+..++..+
T Consensus 173 l~--~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 IL--SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HH--TTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH--HHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 22367899999999999999988755433333 3567899999999999888776544
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1.3e-15 Score=165.17 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=27.4
Q ss_pred ccCcceeEEEeCCCCcccccccccCcCCcceeccccc
Q 042863 404 SKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRN 440 (680)
Q Consensus 404 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~ 440 (680)
..+++|+.|+|++|.++.+|..+++|++|+.|++++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccc
Confidence 4566777777777777777777777777777777655
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.45 E-value=2.3e-12 Score=122.88 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=120.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
|+||+++++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+ ...+.++............ .+.
T Consensus 19 ~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRH-KIK 90 (226)
T ss_dssp CCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHH-HHH
T ss_pred HcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHH-HHH
Confidence 689999999999999762 223499999999999999999987321 1122 2244455444333322221 111
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHH-HHhhccCCCCC
Q 042863 80 SITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKV-ASVMGTRGGTT 158 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~-~~~~~~~~~~~ 158 (680)
....... ....++.+||+||++.........+...+.....++++|+||+.... ..... .+..
T Consensus 91 ~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~--~r~~ 154 (226)
T 2chg_A 91 EFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCA 154 (226)
T ss_dssp HHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH--TTSE
T ss_pred HHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH--HhCc
Confidence 1110000 01256789999999887777777777777666667788888876531 11111 1234
Q ss_pred ceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 159 GYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 159 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
.+.+++++.++..+++...+.......+ ++.+..+++.++|+|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999999999988754433323 25668899999999996554443
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=4.1e-13 Score=131.10 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=91.5
Q ss_pred hccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccE
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRV 482 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 482 (680)
+..+++|++|++++|.++.++ .+..+++|++|++++|. +..++. +..+++|++|++++|.. ..+|.... ++|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRL-KNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-SCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCcc-CCcCcccc--CcccE
Confidence 445666777777777666665 56666777777777664 333444 66677777777776643 33443222 66777
Q ss_pred EEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 483 FEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 483 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
|++++|.++..+ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 777777666653 46666777777777655 34443 456667777777777665443 446667777777777664
No 124
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.8e-12 Score=134.82 Aligned_cols=293 Identities=14% Similarity=0.083 Sum_probs=172.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc---CCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH---FELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
|+||+++++.+.+.+.... .+...+.++|+|++|+|||+||+.++. ..... -..++|+++....+...++..+
T Consensus 22 ~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 22 LPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 7899999999999987532 123456899999999999999999998 43333 2357788877766777777777
Q ss_pred HHHhcCCCC-CCcCHHHHHHHHHHHhC--CceEEEEEecCCCCC----hhHHHHHHHhcCC-CCCCCEEEEecCchHHHH
Q 042863 78 IKSITGQNQ-GDLDIEQLQRILRVCLN--GKRYLLVMDDVWNED----PKVWDKLKSLLSG-GAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 78 ~~~l~~~~~-~~~~~~~~~~~~~~~l~--~~~~llvlD~~~~~~----~~~~~~l~~~l~~-~~~~~~iiiTsR~~~~~~ 149 (680)
+..++.... ...+..+....+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 777754322 22345555666665553 448999999996521 3344445444432 233556777777653211
Q ss_pred h----hccCCCCCceeCCCCChhhHHHHHHHHhccc--CCCCCchHHHHHHHHHHhhC---CChhHHHHHHhhhc-----
Q 042863 150 V----MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKE--ERDKHPNLVKIGEEIVKKCG---GIPLAVRTLGSLLY----- 215 (680)
Q Consensus 150 ~----~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~---g~Pl~l~~~~~~l~----- 215 (680)
. ....-....+.+++++.++..+++...+... ..... ++.+..+++.++ |+|..+..+.....
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 1 1111111468999999999999999876422 12222 355677888887 99984443332221
Q ss_pred -c--CCChhhHHHHHhhhhcccccccccchhhHhccccCCcHHHHHHHHHhhcCCC-C-eeechHHHHHH----HHHcCC
Q 042863 216 -C--STDEHDWEYVRDNEIWKLEQKANDILPVLRFSYDQLPPRLKQCVAYCCIFPK-D-YQFSSVYLVQF----WMAQGL 286 (680)
Q Consensus 216 -~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~L~~~~~~~~~~~~~f~~-~-~~~~~~~l~~~----w~~~g~ 286 (680)
. .............. ....+...+..+++.++.++..++.+.+ + ..+....+.+. .-..|
T Consensus 255 ~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred cCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 0 11222222222111 1234555677888888888888774322 1 22333322211 11112
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCCccccc
Q 042863 287 LHPLNENDELDDIGMRSLKQLCSRSFFHDL 316 (680)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 316 (680)
. ..........++..|...+++...
T Consensus 324 ~-----~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 V-----EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp C-----CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-----CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 111234566788999999998753
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=6.7e-13 Score=120.21 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=96.2
Q ss_pred ccCcceeEEEeCCCCcc--cccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCccc
Q 042863 404 SKSQFLRVLNLSGSAIE--ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLR 481 (680)
Q Consensus 404 ~~~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 481 (680)
...++|+.|++++|.++ .+|..+..+++|++|++++|... .+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34577888888888888 78877788888899998888644 33 5577888888888888876666777777788888
Q ss_pred EEEeccccccccc--cccCcccccceeecccccCcccchh----hccCCcccceeecccccC
Q 042863 482 VFEVTTKQKSLQD--SGIGCLVSLRCLIISHCRNLEYLFD----DIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 482 ~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~ 537 (680)
.|++++|.+..++ ..+..+++|+.|++++|. ++.++. .+..+++|+.|++++|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 8888888877754 566677777777777764 333443 556666777777766653
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=1.9e-12 Score=123.60 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=93.4
Q ss_pred cceeEEEeCCCCcccc-cccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEe
Q 042863 407 QFLRVLNLSGSAIEAL-PKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEV 485 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 485 (680)
++|++|+|++|.++.+ +..+.++++|++|++++|.+....+..+..+++|++|+|++|.+....+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6788888888888755 456777888888888887543333344577888888888887555433444677788888888
Q ss_pred ccccccccccccCcccccceeecccccCcccch-hhccCCcccceeecccccCc
Q 042863 486 TTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLF-DDIDQLRVLRSLLIAGCPCL 538 (680)
Q Consensus 486 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 538 (680)
++|.+..++..+..+++|+.|++++|. ++.++ ..+..+++|+.|++++|++.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 888887777777778888888888765 34444 45677788888888887654
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=6.9e-13 Score=136.31 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=94.3
Q ss_pred cceeEEEeCCCCccccccc-cc-CcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEE
Q 042863 407 QFLRVLNLSGSAIEALPKE-IG-NLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFE 484 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 484 (680)
+.++.|+|++|.++.++.. +. ++++|++|++++|.+....+..+..+++|++|+|++|.+....+..+..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3467777777777755543 43 677777777777754444445566777777777777654444444566677777777
Q ss_pred ecccccccc-ccccCcccccceeecccccCcccchhhc----cCCcccceeecccccCcccCCccCCCCCC--cCeEeec
Q 042863 485 VTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDI----DQLRVLRSLLIAGCPCLISLPPAMRYLSS--LETLMFV 557 (680)
Q Consensus 485 l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~ 557 (680)
+++|.+... +..+..+++|+.|++++|. ++.+|..+ ..+++|+.|++++|.+....+..+..+++ |+.|+++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 777777665 4456667777777777654 34454433 45677777777777654333334555554 3667777
Q ss_pred CCC
Q 042863 558 ECE 560 (680)
Q Consensus 558 ~~~ 560 (680)
+|+
T Consensus 198 ~N~ 200 (361)
T 2xot_A 198 NNP 200 (361)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=3.1e-13 Score=151.28 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=118.8
Q ss_pred HHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCccccccc
Q 042863 398 FVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYL 477 (680)
Q Consensus 398 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 477 (680)
.++..+..++.|+.|+|++|.+..+|..+.++++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4566788999999999999999999988889999999999999655 88998999999999999999755 889999999
Q ss_pred CcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcc-cceeecccccCcccCCccCCCCCCcCeEee
Q 042863 478 VSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRV-LRSLLIAGCPCLISLPPAMRYLSSLETLMF 556 (680)
Q Consensus 478 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 556 (680)
++|++|++++|.++.+|..+..+++|+.|++++|...+.+|..+..+.. +..+++++|.+.+.+|. .|+.|++
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 9999999999999988888999999999999999876667766654322 23467888877766665 3444555
Q ss_pred cCC
Q 042863 557 VEC 559 (680)
Q Consensus 557 ~~~ 559 (680)
+.|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 554
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1.6e-12 Score=123.20 Aligned_cols=130 Identities=23% Similarity=0.290 Sum_probs=100.0
Q ss_pred cceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCccc-ccccCcccEEE
Q 042863 407 QFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKD-IRYLVSLRVFE 484 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~ 484 (680)
++|+.|+|++|.++.++. .+.++++|++|++++|.+....|..+..+++|++|+|++|.+. .+|.. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence 578888888888886664 6778888888888888766666777888888888888887654 45544 57788888888
Q ss_pred ecccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeecccccC
Q 042863 485 VTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 485 l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 537 (680)
+++|.+... +..+..+++|+.|++++|...+..+..+..+++|+.|++++|++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 888888877 55677888888888888764443344577788888888888865
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=122.88 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=114.9
Q ss_pred cEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccc--cccCcCCcceeccccccCCCccChhhcCCCCCcEEe
Q 042863 383 RTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPK--EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLN 460 (680)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 460 (680)
++++++++.... ++.. -.+.+++|+|++|.++.++. .+.++++|++|++++|.+....+..+..+++|++|+
T Consensus 14 ~~l~~s~n~l~~----iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNK----IPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSS----CCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCccc----CccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 466666654321 1111 13457899999999987643 478899999999998865555555788899999999
Q ss_pred cCCccccccCcccccccCcccEEEecccccccc-ccccCcccccceeecccccCcccchhhccCCcccceeecccccCcc
Q 042863 461 LEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLI 539 (680)
Q Consensus 461 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 539 (680)
|++|.+....+..+..+++|+.|++++|.+... +..+..+++|+.|++++|...+..|..+..+++|+.|++++|++..
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 999877665566688899999999999998877 5678888999999999877555457788889999999999987643
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.5e-12 Score=133.86 Aligned_cols=174 Identities=15% Similarity=0.098 Sum_probs=131.9
Q ss_pred eeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhc-CCCCCcEEecCCccccccCcccccccCcccEEEecc
Q 042863 409 LRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAIC-ELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTT 487 (680)
Q Consensus 409 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 487 (680)
-+.++++++.++.+|..+. +.++.|++++|.+....+..+. .+++|+.|+|++|.+....+..+..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3688999999999987654 4689999999965555555565 899999999999976665667799999999999999
Q ss_pred cccccccc-ccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccC---CCCCCcCeEeecCCCCcc
Q 042863 488 KQKSLQDS-GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAM---RYLSSLETLMFVECESLS 563 (680)
Q Consensus 488 ~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 563 (680)
|.+..++. .+..+++|+.|++++|......+..+..+++|+.|++++|.+..-.+..+ ..+++|+.|+|++|..-.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99988744 67889999999999987555456788899999999999998654333333 578999999999985322
Q ss_pred ccccccccCCCCcCcccCCCCc--ccceeccccc
Q 042863 564 LNLSMQLEGEGSHQASNTTRPH--LRKLLIGQVT 595 (680)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~ 595 (680)
.. ......++. |+.|++.+|+
T Consensus 178 l~-----------~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LP-----------LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CC-----------HHHHHHSCHHHHTTEECCSSC
T ss_pred cC-----------HHHhhhccHhhcceEEecCCC
Confidence 11 011223344 4778888876
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=8.9e-13 Score=116.72 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=92.4
Q ss_pred ccCcceeEEEeCCCCcc--cccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCccc
Q 042863 404 SKSQFLRVLNLSGSAIE--ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLR 481 (680)
Q Consensus 404 ~~~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 481 (680)
...++|+.|++++|.++ .+|..+..+++|++|++++|..... ..++.+++|++|++++|...+.+|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34578999999999888 7888788889999999998854433 5577888899999988876666777777788888
Q ss_pred EEEeccccccccc--cccCcccccceeecccccCcccchh----hccCCcccceeecc
Q 042863 482 VFEVTTKQKSLQD--SGIGCLVSLRCLIISHCRNLEYLFD----DIDQLRVLRSLLIA 533 (680)
Q Consensus 482 ~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~ 533 (680)
.|++++|.++..+ ..+..+++|+.|++++|. ++.++. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 8888888877653 556666777777776664 333332 45556666666554
No 133
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.4e-12 Score=127.32 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=124.8
Q ss_pred hhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCC
Q 042863 376 LSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQS 455 (680)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 455 (680)
+..+++|+.|++++|..... + .+..+++|+.|+|++|.++.++. +.++++|++|++++|. ...+|. +.. ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l----~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSL----A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SS
T ss_pred hhhcCcCcEEECcCCCcccc----h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-Cc
Confidence 56789999999998864322 1 47889999999999999998877 8999999999999995 445565 333 89
Q ss_pred CcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccc
Q 042863 456 LQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGC 535 (680)
Q Consensus 456 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 535 (680)
|++|++++|... .++ .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.. +.+ ..+..+++|+.|++++|
T Consensus 108 L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 108 LSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI-TNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC-CBC-TTSTTCCCCCEEEEEEE
T ss_pred ccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC-cch-HHhccCCCCCEEeCCCC
Confidence 999999998654 454 6889999999999999998875 688899999999999864 444 67888999999999999
Q ss_pred cCccc
Q 042863 536 PCLIS 540 (680)
Q Consensus 536 ~~~~~ 540 (680)
.+...
T Consensus 183 ~~~~~ 187 (263)
T 1xeu_A 183 KCVNE 187 (263)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 86544
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=2.7e-14 Score=154.81 Aligned_cols=175 Identities=14% Similarity=0.137 Sum_probs=113.0
Q ss_pred hhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCC-------------cc-cccccccCcCCcceec-ccccc
Q 042863 377 SDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSA-------------IE-ALPKEIGNLKHMRYLD-LSRNY 441 (680)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------------~~-~~~~~~~~l~~L~~L~-l~~~~ 441 (680)
..+++|+.|+++.|. ...++..++.|++|+.|++++|. .. ..|..++++++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~----L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEK----STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHH----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhh----HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 457788899998874 34667788999999999997764 22 3445667778888887 44432
Q ss_pred CCCccCh------hhcC--CCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccC
Q 042863 442 KIKKLPN------AICE--LQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRN 513 (680)
Q Consensus 442 ~~~~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 513 (680)
...++. .+.. ...|+.|++++|.+ ..+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~- 497 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA- 497 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-
Confidence 111111 0111 12467777777643 34665 677777777777777777666667777777777777655
Q ss_pred cccchhhccCCcccceeecccccCcccC-CccCCCCCCcCeEeecCCC
Q 042863 514 LEYLFDDIDQLRVLRSLLIAGCPCLISL-PPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 560 (680)
++.+| .++.+++|+.|++++|.+.+.. |..++.+++|+.|++++|.
T Consensus 498 l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 498 LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 33455 6666777777777777655444 6666667777777776664
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3.1e-13 Score=151.32 Aligned_cols=144 Identities=18% Similarity=0.137 Sum_probs=107.9
Q ss_pred eCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccc
Q 042863 414 LSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ 493 (680)
Q Consensus 414 L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 493 (680)
+..|.+...+..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.+. .+|..++.+++|+.|++++|.++.+
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp --------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc
Confidence 3334444456678889999999999985 4478887889999999999998655 8999999999999999999999988
Q ss_pred ccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCC-cCeEeecCCC
Q 042863 494 DSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSS-LETLMFVECE 560 (680)
Q Consensus 494 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 560 (680)
|..+..+++|+.|++++|. ++.+|..++.+++|+.|+|++|.+.+.+|..+..+.. +..|++++|.
T Consensus 286 p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp CSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 8889999999999999875 5688888999999999999999988777776644322 1234566653
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=1.2e-11 Score=114.46 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=87.9
Q ss_pred eEEEeCCCCcccccccccCcCCcceeccccccCCCccCh-hhcCCCCCcEEecCCccccccCcccccccCcccEEEeccc
Q 042863 410 RVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPN-AICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTK 488 (680)
Q Consensus 410 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 488 (680)
+.++++++.++.+|..+.. +|++|++++|.+....+. .+..+++|++|+|++|.+.+..|..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6778888888877775543 788888888754433332 3677888888888887766666777777888888888888
Q ss_pred ccccccc-ccCcccccceeecccccCcccchhhccCCcccceeecccccCc
Q 042863 489 QKSLQDS-GIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCL 538 (680)
Q Consensus 489 ~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 538 (680)
.+...+. .+..+++|+.|++++|...+..|..+..+++|+.|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7776633 3666777777777776654444556666677777777766654
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=3.8e-12 Score=115.17 Aligned_cols=129 Identities=20% Similarity=0.173 Sum_probs=66.7
Q ss_pred cCCcceeccccccCC-CccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccc-cccccCccccccee
Q 042863 429 LKHMRYLDLSRNYKI-KKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL-QDSGIGCLVSLRCL 506 (680)
Q Consensus 429 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L 506 (680)
.++|++|++++|... +.+|..+..+++|++|++++|... .+ ..+..+++|+.|++++|.+.. .+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666433 355555555666666666665432 23 445555566666666665555 23333345555566
Q ss_pred ecccccCcccch--hhccCCcccceeecccccCcccCC---ccCCCCCCcCeEeecCCC
Q 042863 507 IISHCRNLEYLF--DDIDQLRVLRSLLIAGCPCLISLP---PAMRYLSSLETLMFVECE 560 (680)
Q Consensus 507 ~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~ 560 (680)
++++|. ++.++ ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 555553 33332 445555555555555554432222 244555555555555553
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3e-12 Score=113.30 Aligned_cols=127 Identities=18% Similarity=0.146 Sum_probs=92.4
Q ss_pred CcCCcceeccccccCC-CccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccc-cccccCcccccce
Q 042863 428 NLKHMRYLDLSRNYKI-KKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSL-QDSGIGCLVSLRC 505 (680)
Q Consensus 428 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~ 505 (680)
..++|+.|++++|... +.+|..+..+++|++|++++|.... + ..++.+++|+.|++++|.++. .+..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3477888888888655 4777777888888888888875443 3 667788888888888888877 4555556788888
Q ss_pred eecccccCcccc--hhhccCCcccceeecccccCcccCC---ccCCCCCCcCeEeec
Q 042863 506 LIISHCRNLEYL--FDDIDQLRVLRSLLIAGCPCLISLP---PAMRYLSSLETLMFV 557 (680)
Q Consensus 506 L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 557 (680)
|++++|. ++.+ +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888876 3443 3667778888888888886654433 356777888877665
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=5.4e-12 Score=115.07 Aligned_cols=129 Identities=20% Similarity=0.162 Sum_probs=75.8
Q ss_pred hccCcceeEEEeCCCCcccccccccCc-CCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCccc-ccccCcc
Q 042863 403 ISKSQFLRVLNLSGSAIEALPKEIGNL-KHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKD-IRYLVSL 480 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L 480 (680)
+..+++|+.|++++|.++.++. +..+ ++|++|++++|... .+ ..+..+++|++|++++|.+. .+|.. +..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC-cc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 4456677777777777776643 3333 37777777777433 33 34666777777777776544 34433 3666777
Q ss_pred cEEEecccccccccc--ccCcccccceeecccccCcccchhh----ccCCcccceeeccccc
Q 042863 481 RVFEVTTKQKSLQDS--GIGCLVSLRCLIISHCRNLEYLFDD----IDQLRVLRSLLIAGCP 536 (680)
Q Consensus 481 ~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~ 536 (680)
+.|++++|.+..++. .+..+++|+.|++++|. +..+|.. +..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777777776655543 45555666666666554 2333332 4455555555555543
No 140
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3.4e-11 Score=121.81 Aligned_cols=184 Identities=15% Similarity=0.197 Sum_probs=116.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
|+||+++++.+.+++.. +..+.+.++|++|+|||++|+.+++... ...+ ..+++++....... ...+.++.
T Consensus 23 ~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 94 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKD------GNMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQIK 94 (323)
T ss_dssp CCSCTHHHHHHHHHHHS------CCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred HHCCHHHHHHHHHHHHc------CCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHHHH
Confidence 68999999999999965 2223499999999999999999988421 1111 12444444332222 12222222
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHh-CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHH-HHhhccCCCC
Q 042863 80 SITGQNQGDLDIEQLQRILRVCL-NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKV-ASVMGTRGGT 157 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~-~~~~~~~~~~ 157 (680)
.+.... ..+ .+++.++|+||++.......+.+...+.....++.+|++|+...- ..... .+.
T Consensus 95 ~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~--sr~ 158 (323)
T 1sxj_B 95 HFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ--SQC 158 (323)
T ss_dssp HHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH--TTS
T ss_pred HHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH--hhc
Confidence 221000 001 345789999999887666666666666655567778888766431 11111 233
Q ss_pred CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhH-HHHHH
Q 042863 158 TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLA-VRTLG 211 (680)
Q Consensus 158 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~-l~~~~ 211 (680)
..+.+++++.++..+++...+...+...+ ++.+..+++.++|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 57999999999999999987754433333 25668999999999964 44443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=3.7e-11 Score=121.74 Aligned_cols=98 Identities=12% Similarity=0.018 Sum_probs=62.5
Q ss_pred CcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCccc-ceecccccCCcccch
Q 042863 524 LRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLR-KLLIGQVTPLLELPQ 602 (680)
Q Consensus 524 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~ 602 (680)
+++|+.+++++|.+..-....+.+|++|++|++.++ +. ..-...+..+++|+ .+++.+ .++.++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~----------~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LK----------TIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CC----------EECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cc----------eehHHHhhCChhccEEEEEcc--cceEEch
Confidence 678888888877654444456778888888888775 22 11133456677787 888876 4666664
Q ss_pred hhhhhhcccCCccceeeeccCCCCCCCCc----CCCCCCeEE
Q 042863 603 WLLQESLRNFQALEGLVIGNCPKLLSLPE----DMLHLKTLR 640 (680)
Q Consensus 603 ~~~~~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~L~~l~ 640 (680)
.++.+|++|+.++++++. ++.++. ++++|+.++
T Consensus 291 ----~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 ----GAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ----TTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred ----hhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 244578888888886654 444443 455666654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=5.2e-11 Score=110.06 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=67.7
Q ss_pred eEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccc
Q 042863 410 RVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQ 489 (680)
Q Consensus 410 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 489 (680)
+.++++++.++.+|..+. ++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456667776666665432 466666666663 34555566666666666666665444444455666666666666666
Q ss_pred ccccc-cccCcccccceeecccccCcccchh-hccCCcccceeeccccc
Q 042863 490 KSLQD-SGIGCLVSLRCLIISHCRNLEYLFD-DIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 490 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 536 (680)
++.++ ..+..+++|+.|++++|. ++.++. .+..+++|+.|++++|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 55553 234455555555555543 222322 24444455555554443
No 143
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.20 E-value=2.9e-11 Score=122.33 Aligned_cols=181 Identities=15% Similarity=0.089 Sum_probs=113.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+|++..++.+.+.+.... ..+...+.+.|+|++|+|||++|+.+++ .... ..+++++........+.
T Consensus 14 ~ig~~~~~~~l~~~l~~~~-~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l~------ 81 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAK-ARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDLA------ 81 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHH-HHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHHH------
T ss_pred hhCHHHHHHHHHHHHHHHH-ccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHHH------
Confidence 6899999999988886421 0112346799999999999999999987 3322 23455544332221111
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC------------------CCCEEEEec
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA------------------KGSKILVTT 142 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~------------------~~~~iiiTs 142 (680)
..+... ...+.+|++|+++.........+...+.... .+.++|.+|
T Consensus 82 ---------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 82 ---------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp ---------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred ---------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 111110 1345699999998876655555554443221 235566666
Q ss_pred CchH-HHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhhh
Q 042863 143 RSNK-VASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 214 (680)
Q Consensus 143 R~~~-~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~l 214 (680)
.... +..... .+. ..+.+++++.++..+++...+.......+ ++.+..+++.++|+|..+..+...+
T Consensus 146 ~~~~~~~~~l~--~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 146 TRPGLITAPLL--SRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp SCCSSCSCSTT--TTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCcccCCHHHH--hcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5432 111111 222 46899999999999999988765443333 3667899999999999887766554
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.8e-11 Score=111.57 Aligned_cols=132 Identities=16% Similarity=0.092 Sum_probs=106.3
Q ss_pred hhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCcccccccccCcCCcceeccccccCCCccCh-hhcCCC
Q 042863 376 LSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPN-AICELQ 454 (680)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~ 454 (680)
+.++++|+.|++++|..... +.....+++|++|++++|.++.+ ..+.++++|++|++++|.+. .+|. .+..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 45678899999998864322 22233345999999999999987 67889999999999999654 4554 348899
Q ss_pred CCcEEecCCccccccCcc--cccccCcccEEEeccccccccccc----cCcccccceeecccccCc
Q 042863 455 SLQTLNLEECLELEELPK--DIRYLVSLRVFEVTTKQKSLQDSG----IGCLVSLRCLIISHCRNL 514 (680)
Q Consensus 455 ~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 514 (680)
+|++|++++|.+ +.+|. .+..+++|+.|++++|.+...+.. +..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999865 66776 788999999999999999887664 788999999999987643
No 145
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.18 E-value=5e-10 Score=110.17 Aligned_cols=175 Identities=14% Similarity=0.098 Sum_probs=109.0
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh---cC--CcEEEEEeCCcCCHHHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE---HF--ELKIWICISEDFGERQIMTK 76 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~ 76 (680)
.||++|++.+...|.... ..+.+..+.|+|++|.|||++++.+++...... .. -.++++++....+...++..
T Consensus 23 ~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 23 KSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 589999999998887643 235677899999999999999999998432111 11 13668888888888899999
Q ss_pred HHHHhcCCCCC-CcCHHHHHHHHHHH--hCCceEEEEEecCCCCChhHHHHHHHhcC---CCCCCCEEEEecCch---H-
Q 042863 77 IIKSITGQNQG-DLDIEQLQRILRVC--LNGKRYLLVMDDVWNEDPKVWDKLKSLLS---GGAKGSKILVTTRSN---K- 146 (680)
Q Consensus 77 ~~~~l~~~~~~-~~~~~~~~~~~~~~--l~~~~~llvlD~~~~~~~~~~~~l~~~l~---~~~~~~~iiiTsR~~---~- 146 (680)
+++++...... ....+.+...+... -.++++++++|+++... ..+.+..++. .......+|.++... .
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99999644222 22334444444432 24568999999997643 2233333332 222223334334322 1
Q ss_pred -HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcc
Q 042863 147 -VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 147 -~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
+......+-....+..+|++.+|..++++.++..
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1111111112246899999999999999988754
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=1.1e-10 Score=107.79 Aligned_cols=125 Identities=16% Similarity=0.080 Sum_probs=99.7
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCccccccCcc-cccccCcccEEEecccccccc-ccccCcccccceeeccc
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPK-DIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISH 510 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~ 510 (680)
+.++++++. ++.+|..+. ++|++|++++|.+....+. .+..+++|+.|++++|.++.. +..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-cCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678888874 567776553 3899999999865444433 378899999999999998887 66788899999999999
Q ss_pred ccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 511 CRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 511 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
|......+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 87554445557888999999999998887778888889999999998885
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=4.4e-13 Score=125.02 Aligned_cols=110 Identities=26% Similarity=0.333 Sum_probs=55.3
Q ss_pred cccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccc
Q 042863 425 EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLR 504 (680)
Q Consensus 425 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~ 504 (680)
.+..+++|++|++++|.. ..+| .+..+++|++|++++|.. ..+|..+..+++|+.|++++|.++.++ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 455555555555555532 2244 345555555555555532 245554445555555555555555443 344555555
Q ss_pred eeecccccCcccch--hhccCCcccceeecccccCcc
Q 042863 505 CLIISHCRNLEYLF--DDIDQLRVLRSLLIAGCPCLI 539 (680)
Q Consensus 505 ~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~ 539 (680)
.|++++|. ++.++ ..+..+++|+.|++++|.+.+
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 55555543 22222 244555556666665555433
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=1.7e-10 Score=105.13 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=73.2
Q ss_pred eeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccc
Q 042863 409 LRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTK 488 (680)
Q Consensus 409 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 488 (680)
.+.++++++.++.+|..+ .++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456677777776666443 256777777776544333344566777777777776544333333566666777777766
Q ss_pred ccccccc-ccCcccccceeecccccCcccchhh-ccCCcccceeecccccCc
Q 042863 489 QKSLQDS-GIGCLVSLRCLIISHCRNLEYLFDD-IDQLRVLRSLLIAGCPCL 538 (680)
Q Consensus 489 ~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 538 (680)
.++..+. .+..+++|+.|++++|. ++.++.. +..+++|+.|++++|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6665533 24556666666666553 3334332 345556666666665543
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=1.8e-10 Score=116.75 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=117.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+++.++.+..++.. +..+.+.++|++|+|||++|+.+++...-...-...+.++.+..... ......+..
T Consensus 27 ~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 99 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKT------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI-NVIREKVKE 99 (327)
T ss_dssp CCSCHHHHHHHHHHHHH------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH-HTTHHHHHH
T ss_pred hhCCHHHHHHHHHHHHc------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch-HHHHHHHHH
Confidence 68999999999999976 23345999999999999999999884211111012334443321111 111111111
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHH-HHhhccCCCCCc
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKV-ASVMGTRGGTTG 159 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~-~~~~~~~~~~~~ 159 (680)
+.... ....+++.++|+||++.........+...+.....++++|+|+..... ..... .+...
T Consensus 100 ~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~--sr~~~ 163 (327)
T 1iqp_A 100 FARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCAI 163 (327)
T ss_dssp HHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH--HTEEE
T ss_pred HHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH--hhCcE
Confidence 10000 001256789999999887777777777777666667788888876531 11111 12246
Q ss_pred eeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhh
Q 042863 160 YNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 213 (680)
Q Consensus 160 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 213 (680)
+.+++++.++..+++...+...+...+ ++.+..|++.++|+|..+..+...
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 899999999999999988755433323 356789999999999865554433
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.1e-10 Score=106.04 Aligned_cols=106 Identities=25% Similarity=0.272 Sum_probs=90.9
Q ss_pred cceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEec
Q 042863 407 QFLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVT 486 (680)
Q Consensus 407 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 486 (680)
++|++|+|++|.++.+|..+.++++|++|++++|.+....+..+..+++|++|+|++|.+....|..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 57999999999999888889999999999999997666666678889999999999987666666678899999999999
Q ss_pred ccccccccc-ccCcccccceeeccccc
Q 042863 487 TKQKSLQDS-GIGCLVSLRCLIISHCR 512 (680)
Q Consensus 487 ~~~~~~~~~-~l~~l~~L~~L~l~~~~ 512 (680)
+|.+..++. .+..+++|+.|++++|.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 999988755 57788999999999875
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=5e-10 Score=113.31 Aligned_cols=102 Identities=14% Similarity=-0.012 Sum_probs=76.5
Q ss_pred ccccceeecccccCcccch-hhccCCcccceeecccccCcccCCccCCCCCCcC-eEeecCCCCccccccccccCCCCcC
Q 042863 500 LVSLRCLIISHCRNLEYLF-DDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLE-TLMFVECESLSLNLSMQLEGEGSHQ 577 (680)
Q Consensus 500 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~ 577 (680)
+++|+.+++.+|. ++.++ ..+..|++|+.+++.+| +..--+..|.+|++|+ .+.+.+. +. ..-.
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~--l~----------~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS--VT----------AIEF 290 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT--CC----------EECT
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc--ce----------EEch
Confidence 7899999999865 55665 46889999999999987 3333445689999999 9999772 22 1123
Q ss_pred cccCCCCcccceecccccCCcccchhhhhhhcccCCccceeee
Q 042863 578 ASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVI 620 (680)
Q Consensus 578 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l 620 (680)
..+..|++|+.+++.++ .++.++.. ++.+|++|+.++.
T Consensus 291 ~aF~~c~~L~~l~l~~n-~i~~I~~~----aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGD-KITTLGDE----LFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSS-CCCEECTT----TTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCC-ccCccchh----hhcCCcchhhhcc
Confidence 46678899999999776 47777753 4568999998864
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.07 E-value=1.7e-09 Score=111.74 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=117.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++||+.+++.+...+... .....+.++|++|+|||++|+.+++.......... ..+. .......+...
T Consensus 18 ~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~----~~~~~~~~~~~ 85 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCG----VCDNCREIEQG 85 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCS----SSHHHHHHHTS
T ss_pred ccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCc----ccHHHHHHhcc
Confidence 689999999999999762 22347899999999999999999874221111100 0000 00111111110
Q ss_pred hcCC-------C-CCCcCHHHHHHHHHHH-hCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHh
Q 042863 81 ITGQ-------N-QGDLDIEQLQRILRVC-LNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASV 150 (680)
Q Consensus 81 l~~~-------~-~~~~~~~~~~~~~~~~-l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~ 150 (680)
.... . .......++...+... ..+++.++|+||++..+....+.+...+...+.+..+|++|.+.. +...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 0000 0 0111222222211110 134568999999988877777778777776666677777776442 1111
Q ss_pred hccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 151 MGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 151 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
.. .+...+.+++++.++..+++...+...+...+ ++.+..|++.++|+|..+..+..
T Consensus 166 l~--sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 166 IL--SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HH--TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HH--hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 23467899999999999999987754433333 25668899999999997766553
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=1.5e-09 Score=98.78 Aligned_cols=126 Identities=15% Similarity=0.072 Sum_probs=86.0
Q ss_pred cceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccccc-ccCcccccceeeccc
Q 042863 432 MRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDS-GIGCLVSLRCLIISH 510 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~ 510 (680)
.+.++++++. ...+|..+ .++|++|++++|......+..+..+++|+.|++++|.++..+. .+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4567777663 45566433 3678888888876554344456788888888888888877644 357788888888888
Q ss_pred ccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 511 CRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 511 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
|...+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 76433233345677888888888877654444445677788888887774
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.02 E-value=1.3e-09 Score=109.80 Aligned_cols=181 Identities=13% Similarity=0.136 Sum_probs=115.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++|+++.++.+.+.+.. +..+.+.++|++|+|||++|+.+++... ...+ ..++.++.+.......
T Consensus 19 ~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~------- 84 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVER------KNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV------- 84 (319)
T ss_dssp SCSCHHHHHHHHTTTTT------TCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-------
T ss_pred HhCCHHHHHHHHHHHhC------CCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-------
Confidence 58999999998888854 2233489999999999999999987321 1111 1233444443211110
Q ss_pred HhcCCCCCCcCHHHHHHHHHHH--h-CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccCC
Q 042863 80 SITGQNQGDLDIEQLQRILRVC--L-NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTRG 155 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~--l-~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~~ 155 (680)
........... + .+++.++|+|+++.........+...+...+.++++|++|.... +..... .
T Consensus 85 -----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~--s 151 (319)
T 2chq_A 85 -----------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--S 151 (319)
T ss_dssp -----------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH--T
T ss_pred -----------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH--h
Confidence 00111111110 1 25578999999988776666667777776666777887776543 111111 2
Q ss_pred CCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 156 GTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 156 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+...+.+++++.++..+++...+...+...++ +.+..+++.++|++..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBCH---HHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHHH
Confidence 33578999999999999999887655443333 566889999999998654443
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=4.7e-11 Score=111.16 Aligned_cols=130 Identities=16% Similarity=0.124 Sum_probs=98.2
Q ss_pred cCcCCcceeccccccCCCccC------hhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcc
Q 042863 427 GNLKHMRYLDLSRNYKIKKLP------NAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCL 500 (680)
Q Consensus 427 ~~l~~L~~L~l~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l 500 (680)
.....++.++++.+.+.+..| ..+..+++|++|++++|... .+| .+..+++|+.|++++|.+..++..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 334455556665555444444 37888999999999998644 477 8889999999999999998887777778
Q ss_pred cccceeecccccCcccchhhccCCcccceeecccccCcccCC-ccCCCCCCcCeEeecCCC
Q 042863 501 VSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLP-PAMRYLSSLETLMFVECE 560 (680)
Q Consensus 501 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 560 (680)
++|+.|++++|. ++.++ .+..+++|+.|++++|.+....+ ..+..+++|++|++++|+
T Consensus 93 ~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 93 DTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 899999999875 45565 67788999999999987653211 357778888888888874
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=2.7e-09 Score=96.31 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=76.5
Q ss_pred ceeEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecc
Q 042863 408 FLRVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTT 487 (680)
Q Consensus 408 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 487 (680)
..+.++++++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|.+....+..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35778888888888887653 7888888888866666677778888888888888765543333457788888888888
Q ss_pred cccccccc-ccCcccccceeeccccc
Q 042863 488 KQKSLQDS-GIGCLVSLRCLIISHCR 512 (680)
Q Consensus 488 ~~~~~~~~-~l~~l~~L~~L~l~~~~ 512 (680)
|.+..++. .+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88877754 46677777777777764
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=3e-09 Score=96.28 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=70.7
Q ss_pred eEEEeCCCCcccccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCccc-ccccCcccEEEeccc
Q 042863 410 RVLNLSGSAIEALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKD-IRYLVSLRVFEVTTK 488 (680)
Q Consensus 410 ~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~ 488 (680)
+.++++++.++.+|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|.+. .+|.. +..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCC
Confidence 677888888887777553 77888888888655555666777888888888877544 44443 467777888888777
Q ss_pred cccccccc-cCcccccceeeccccc
Q 042863 489 QKSLQDSG-IGCLVSLRCLIISHCR 512 (680)
Q Consensus 489 ~~~~~~~~-l~~l~~L~~L~l~~~~ 512 (680)
.+..++.. +..+++|+.|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 77766543 6667777777777654
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.93 E-value=2.9e-08 Score=100.71 Aligned_cols=179 Identities=17% Similarity=0.164 Sum_probs=112.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+|+++.++.+..++.... ..+.....+.|+|++|+|||++|+.+++ ..... .+.+++.....
T Consensus 31 iiG~~~~~~~l~~~l~~~~-~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~----------- 93 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAK-KRNECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEK----------- 93 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHH-HTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCS-----------
T ss_pred hCChHHHHHHHHHHHHHHH-hcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccc-----------
Confidence 6899999999999987531 0123455799999999999999999987 33222 33444432211
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC------------------CCCEEEEec
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA------------------KGSKILVTT 142 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~------------------~~~~iiiTs 142 (680)
.......+.. .....+|++|+++.........+...+.... ++..+|.+|
T Consensus 94 ----------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 94 ----------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp ----------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred ----------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 1111111111 2456799999998877666666655554321 124566555
Q ss_pred CchH-HHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhh
Q 042863 143 RSNK-VASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 213 (680)
Q Consensus 143 R~~~-~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 213 (680)
.... +...... +. ..+.+++++.++..+++...+.......+ ++.+..+++.+.|+|..+..+...
T Consensus 162 n~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 162 TRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp SCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 1111111 22 46899999999999999988755433222 366788999999999766555443
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2.9e-08 Score=102.60 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=96.0
Q ss_pred hhccCcceeEEEeCCCCcccccc-cccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 402 CISKSQFLRVLNLSGSAIEALPK-EIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
+|.++ +|+.+.+..+ ++.+.. .+.++ +|+.+.+..+ ....-+..|..|++|+.+++..|. +..++.....+.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeeccc
Confidence 34443 4555555543 443332 23332 4555555532 222222345555566666655442 33334333334555
Q ss_pred cEEEecccccccc-ccccCcccccceeecccccCcccch-hhccCCcccceeecccccCcccCCccCCCCCCcCeEeecC
Q 042863 481 RVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYLF-DDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVE 558 (680)
Q Consensus 481 ~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 558 (680)
+.+.+..+ +..+ ...+.+|++|+.+.+..+ ++.++ .++.. .+|+.+.+.++ ...--...+.+|++|+.+.+.+
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEES
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCC
Confidence 55555433 3322 334555555666655542 23332 22333 45555555332 1111233455566666665554
Q ss_pred CCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc----CCC
Q 042863 559 CESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE----DML 634 (680)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~----~~~ 634 (680)
+.... ......-...+..|++|+.+.+.+ .++.++.. ++.+|++|+.+.|..+ ++.+.. ++
T Consensus 281 ~~~~~------~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~----aF~~c~~L~~l~lp~~--l~~I~~~aF~~~- 345 (401)
T 4fdw_A 281 STFND------DPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG----LLGGNRKVTQLTIPAN--VTQINFSAFNNT- 345 (401)
T ss_dssp SCCCC------CTTCEECTTTTTTCTTCCEECCCT--TCCEECTT----TTTTCCSCCEEEECTT--CCEECTTSSSSS-
T ss_pred ccccC------CcccEECHHHhhCCccCCeEEeCC--ceEEEhhh----hhcCCCCccEEEECcc--ccEEcHHhCCCC-
Confidence 32110 000001122344555566665553 24444432 3345566666666443 333322 34
Q ss_pred CCCeEEEcCC
Q 042863 635 HLKTLRIRGC 644 (680)
Q Consensus 635 ~L~~l~l~~c 644 (680)
+|+.+.+.++
T Consensus 346 ~L~~l~l~~n 355 (401)
T 4fdw_A 346 GIKEVKVEGT 355 (401)
T ss_dssp CCCEEEECCS
T ss_pred CCCEEEEcCC
Confidence 5666665554
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.90 E-value=4.1e-09 Score=101.43 Aligned_cols=173 Identities=15% Similarity=0.091 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC
Q 042863 5 DKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ 84 (680)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (680)
++.++.+.+.... ...+.+.|+|++|+|||++|+.+++ ........+.|+++....... ...
T Consensus 37 ~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~~---~~~------- 98 (242)
T 3bos_A 37 DELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASIS---TAL------- 98 (242)
T ss_dssp HHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGSC---GGG-------
T ss_pred HHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHHH---HHH-------
Confidence 3556666666643 2356899999999999999999988 443334456777765421100 000
Q ss_pred CCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhH--HHHHHHhcCCC--CCCCEEEEecCchHH------HHhhccC
Q 042863 85 NQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKV--WDKLKSLLSGG--AKGSKILVTTRSNKV------ASVMGTR 154 (680)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~--~~~l~~~l~~~--~~~~~iiiTsR~~~~------~~~~~~~ 154 (680)
+ +. -.++.+||+||++...... ...+...+... ....++|+||+.... .......
T Consensus 99 -------------~-~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~ 163 (242)
T 3bos_A 99 -------------L-EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRM 163 (242)
T ss_dssp -------------G-TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHH
T ss_pred -------------H-Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHh
Confidence 0 00 1345799999997644332 33344433221 112247777663320 1111100
Q ss_pred CCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHhh
Q 042863 155 GGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 213 (680)
Q Consensus 155 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~~ 213 (680)
.....+.+++++.++..+++...+.......+ ++.+..+++.++|++..+..+...
T Consensus 164 ~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 164 HWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp HHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHHH
Confidence 00146899999999999999988754433333 366789999999999877665543
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=2e-08 Score=102.77 Aligned_cols=194 Identities=10% Similarity=0.068 Sum_probs=116.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++|+++.++.+...+.. +....+.++|++|+|||++|+.+++.......+ ..++.++.+....... +.+.+.
T Consensus 39 i~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 111 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKS------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVK 111 (353)
T ss_dssp CCSCCTTHHHHHHHTTC------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHH
T ss_pred hhCCHHHHHHHHHHHhc------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHH
Confidence 58999999999999865 222348999999999999999999842211111 2344454443322222 222222
Q ss_pred HhcCC-CCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccCCCC
Q 042863 80 SITGQ-NQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTRGGT 157 (680)
Q Consensus 80 ~l~~~-~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~~~~ 157 (680)
..... ....... .....-...+-+|++|+++.........+...+.......++|+++.... +...... +.
T Consensus 112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s--R~ 184 (353)
T 1sxj_D 112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS--QC 184 (353)
T ss_dssp HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--HS
T ss_pred HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc--cC
Confidence 22110 0000000 00000123456999999987776666667666665555666777665442 1111111 22
Q ss_pred CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 158 TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 158 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
..+.+++++.++..+++...+.......+ ++.+..|++.++|.|..+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 46899999999999999988755443333 3667899999999998654443
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.85 E-value=8.8e-09 Score=95.19 Aligned_cols=150 Identities=16% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-------cCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-------HFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 73 (680)
|+||+++++++.+.+.. +..+.+.|+|++|+|||++|+.+++. ... ....++++++....
T Consensus 24 ~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----- 90 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGALV----- 90 (195)
T ss_dssp CCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCEEEEECHHHHH-----
T ss_pred cccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCcEEEeeHHHHh-----
Confidence 68999999999999865 33567899999999999999999883 322 11234455432110
Q ss_pred HHHHHHHhcCCCCCCcCHH-HHHHHHHHHh-CCceEEEEEecCCCCC--------hhHHHHHHHhcCCCCCCCEEEEecC
Q 042863 74 MTKIIKSITGQNQGDLDIE-QLQRILRVCL-NGKRYLLVMDDVWNED--------PKVWDKLKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l-~~~~~llvlD~~~~~~--------~~~~~~l~~~l~~~~~~~~iiiTsR 143 (680)
.......... .+...+.... .+++.+||+||++... ......+...+.. .+..+|.||.
T Consensus 91 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 91 ---------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp ---------TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred ---------ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0000000011 1112222221 3567899999996642 1123334443332 2445677766
Q ss_pred chHHHHhh----ccCCCCCceeCCCCChhhHHHHH
Q 042863 144 SNKVASVM----GTRGGTTGYNLQGLPLEDCLSLF 174 (680)
Q Consensus 144 ~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~l~ 174 (680)
........ ....+...+.+++++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 55422111 01112235889999888877654
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=2.2e-08 Score=103.58 Aligned_cols=237 Identities=11% Similarity=0.102 Sum_probs=162.1
Q ss_pred HhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCC
Q 042863 375 FLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICEL 453 (680)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 453 (680)
.|.++ +|+.+.+..+-. .+...+|.++ +|+.+.+.. .++.+. ..+.+|++|+.+++..|. +..++.....+
T Consensus 131 aF~~~-~L~~i~l~~~i~----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~ 202 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEGLK----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVY 202 (401)
T ss_dssp TTTTC-CCSEEECCTTCC----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTT
T ss_pred hcccC-CccEEEeCCCcc----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEee
Confidence 45565 688888876521 2223456665 699999986 566555 468889999999998874 55555555557
Q ss_pred CCCcEEecCCccccccCcccccccCcccEEEecccccccc-ccccCcccccceeecccccCcccc-hhhccCCcccceee
Q 042863 454 QSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLEYL-FDDIDQLRVLRSLL 531 (680)
Q Consensus 454 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 531 (680)
.+|+.+.+..+ ....-...+.++++|+.+.+..+ +..+ ...+.+ ++|+.+.+.. .++.+ ..++..|++|+.+.
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEE
Confidence 89999999854 33333456788899999999764 4444 344555 7899999843 34555 45788899999999
Q ss_pred cccccCc-----ccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhh
Q 042863 532 IAGCPCL-----ISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQ 606 (680)
Q Consensus 532 l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 606 (680)
+.++... .--...+.+|++|+.+.+... +. ..-...+..|++|+.+.+..+ ++.++.
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~----------~I~~~aF~~c~~L~~l~lp~~--l~~I~~---- 339 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IR----------ILGQGLLGGNRKVTQLTIPAN--VTQINF---- 339 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CC----------EECTTTTTTCCSCCEEEECTT--CCEECT----
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCCc--eE----------EEhhhhhcCCCCccEEEECcc--ccEEcH----
Confidence 9887543 123456889999999998752 22 111335567899999999663 667765
Q ss_pred hhcccCCccceeeeccCCCCCCCCc----CCC-CCCeEEEcCC
Q 042863 607 ESLRNFQALEGLVIGNCPKLLSLPE----DML-HLKTLRIRGC 644 (680)
Q Consensus 607 ~~l~~~~~L~~L~l~~~~~~~~l~~----~~~-~L~~l~l~~c 644 (680)
.++.+| +|+.+++.+|.. ..++. +++ ++++|++..-
T Consensus 340 ~aF~~~-~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TSSSSS-CCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGG
T ss_pred HhCCCC-CCCEEEEcCCCC-cccccccccCCCCCccEEEeCHH
Confidence 345688 999999999853 33332 343 6777877543
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.84 E-value=2.4e-08 Score=104.18 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=104.2
Q ss_pred CCCchhHH---HHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDR---EKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~---~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|++..+ ..+...+.. +....+.++|++|+|||++|+.+++ ..... ++.++.........+.+
T Consensus 28 ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~--~~~~~-----f~~l~a~~~~~~~ir~~ 94 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIAR--YANAD-----VERISAVTSGVKEIREA 94 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHH--HTTCE-----EEEEETTTCCHHHHHHH
T ss_pred hCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHH--HhCCC-----eEEEEeccCCHHHHHHH
Confidence 57888888 788888866 3346899999999999999999987 33222 22222211111112222
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE-ecCchHHHHhhccCCC
Q 042863 78 IKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV-TTRSNKVASVMGTRGG 156 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii-TsR~~~~~~~~~~~~~ 156 (680)
+... ......+++.+|++|+++.......+.+...+... ...+|. ||.+....-.-....+
T Consensus 95 ~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 IERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTT
T ss_pred HHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCc
Confidence 1111 11112466789999999876655555555555542 333443 5555431100011123
Q ss_pred CCceeCCCCChhhHHHHHHHHhcccCC----CCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 157 TTGYNLQGLPLEDCLSLFMKCAFKEER----DKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 157 ~~~~~l~~l~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
...+.+++++.++...++.+....... ....-.++..+.|++.++|.+..+..+.
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 357889999999999999988754211 1111234667889999999998555444
No 165
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=9.3e-09 Score=105.19 Aligned_cols=193 Identities=9% Similarity=0.060 Sum_probs=110.4
Q ss_pred CCCchhHHHHHHHHH-hcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCc---------------------
Q 042863 1 IIGRDKDREKIIEAL-MQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFEL--------------------- 58 (680)
Q Consensus 1 fvgR~~~~~~l~~~l-~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~--------------------- 58 (680)
++|++...+.+.+++ .. + ..+. +.++|++|+||||+|+.++.. ......+
T Consensus 16 ~vg~~~~~~~l~~~~~~~----~-~~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 16 LSHNEELTNFLKSLSDQP----R-DLPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSCHHHHHHHHTTTTCT----T-CCCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------CC
T ss_pred hcCCHHHHHHHHHHHhhC----C-CCCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccccceeee
Confidence 578988888888777 33 1 2223 899999999999999998873 1111001
Q ss_pred -----EEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC
Q 042863 59 -----KIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG 132 (680)
Q Consensus 59 -----~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~ 132 (680)
.+.+...... ......++.+..+....... ... .+.. +..++-++|+|+++..+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111000 00001222222221110000 000 0000 1235669999999887777777777776655
Q ss_pred CCCCEEEEecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCC-chHHHHHHHHHHhhCCChhHHHHH
Q 042863 133 AKGSKILVTTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKH-PNLVKIGEEIVKKCGGIPLAVRTL 210 (680)
Q Consensus 133 ~~~~~iiiTsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Pl~l~~~ 210 (680)
..+..+|++|.+.. +..... .+...+.+++++.++..+++...+...+...+ + +.+..|++.++|.+..+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~--sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIK--SQCLLIRCPAPSDSEISTILSDVVTNERIQLETK---DILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCS---HHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHH--hhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcH---HHHHHHHHHcCCCHHHHHHH
Confidence 55677777776542 211111 23467899999999999999988755433322 2 56689999999999865555
Q ss_pred Hh
Q 042863 211 GS 212 (680)
Q Consensus 211 ~~ 212 (680)
..
T Consensus 237 l~ 238 (354)
T 1sxj_E 237 LE 238 (354)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 166
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.82 E-value=4.3e-08 Score=100.80 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=112.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC----cCCHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE----DFGERQIMTK 76 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (680)
|+|++.+.+.+........ .+....+.+.++|++|+|||++|+.+++ ......+ .+.+++.. .......+.+
T Consensus 46 ivG~~~~~~~l~~l~~~~~-~~~~~~~~vLl~GppGtGKT~la~~la~--~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQ--ALGPDTP-FTAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp EESCHHHHHHHHHHHHHHH-TTCCTTCEEEEEESTTSSHHHHHHHHHH--HHCSSCC-EEEEEGGGGSCSSSCHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCCCHHHHHHHHHH--HhcccCC-cccccchhhhhcccchhHHHHH
Confidence 5788888776444332211 1122346899999999999999999998 3332211 22233211 2233334444
Q ss_pred HHHHhcCC------------------------------CCCCcCHHHHHHHHHHHh-----CCc----eEEEEEecCCCC
Q 042863 77 IIKSITGQ------------------------------NQGDLDIEQLQRILRVCL-----NGK----RYLLVMDDVWNE 117 (680)
Q Consensus 77 ~~~~l~~~------------------------------~~~~~~~~~~~~~~~~~l-----~~~----~~llvlD~~~~~ 117 (680)
..+..... .........+...+.+.. .++ +.+|++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 33331110 000000122222222211 122 359999999888
Q ss_pred ChhHHHHHHHhcCCCCCCCEEEEecCc------------h-HHHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCC
Q 042863 118 DPKVWDKLKSLLSGGAKGSKILVTTRS------------N-KVASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERD 184 (680)
Q Consensus 118 ~~~~~~~l~~~l~~~~~~~~iiiTsR~------------~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 184 (680)
.......+...+....... +++++.. . .+..... .+...+.+++++.++..+++...+......
T Consensus 202 ~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~--sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLL--DRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHH--TTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHH--hhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 8777777777776655443 4444431 1 1111111 123458999999999999999887654333
Q ss_pred CCchHHHHHHHHHHhhC-CChhHHHHHHh
Q 042863 185 KHPNLVKIGEEIVKKCG-GIPLAVRTLGS 212 (680)
Q Consensus 185 ~~~~~~~~~~~i~~~~~-g~Pl~l~~~~~ 212 (680)
.+ ++.+..|++.+. |.|..+..+..
T Consensus 279 ~~---~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 MS---EDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp BC---HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CC---HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33 356788999998 88876655544
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=2.1e-09 Score=110.12 Aligned_cols=160 Identities=13% Similarity=0.032 Sum_probs=83.9
Q ss_pred cCCccEEEEecCCccc-chHHHHHhhc-cCcceeEEEeCCCCccc--ccccccCcCCcceeccccccCCCccChhh----
Q 042863 379 LGRVRTIFFSINDEKV-SQSFVRSCIS-KSQFLRVLNLSGSAIEA--LPKEIGNLKHMRYLDLSRNYKIKKLPNAI---- 450 (680)
Q Consensus 379 ~~~L~~L~l~~~~~~~-~~~~~~~~~~-~~~~L~~L~L~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 450 (680)
++.|+.|++++|.... ....+...+. .+++|+.|+|++|.++. +......+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3556677776665321 1122223333 23577777777776652 22222345567777777774433222222
Q ss_pred -cCCCCCcEEecCCccccc----cCcccccccCcccEEEecccccccc-----ccccCcccccceeecccccCcc----c
Q 042863 451 -CELQSLQTLNLEECLELE----ELPKDIRYLVSLRVFEVTTKQKSLQ-----DSGIGCLVSLRCLIISHCRNLE----Y 516 (680)
Q Consensus 451 -~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~----~ 516 (680)
...++|++|+|++|.+.. .++..+..+++|++|++++|.+... ...+..+++|+.|++++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235667777777765432 2333445566677777776665532 2334445566666666654322 1
Q ss_pred chhhccCCcccceeecccccCc
Q 042863 517 LFDDIDQLRVLRSLLIAGCPCL 538 (680)
Q Consensus 517 ~~~~~~~l~~L~~L~l~~~~~~ 538 (680)
+...+...++|+.|++++|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 3334444566666666666553
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=5.2e-08 Score=104.37 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=110.2
Q ss_pred CCCchhHHHHHHHHHhcCC--------C---CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC
Q 042863 1 IIGRDKDREKIIEALMQTS--------S---GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG 69 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~--------~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (680)
++|++++++.+.+++.... . .+.+..+.+.|+|++|+|||++|+.+++. .. + .++.++++....
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~~~ 115 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDVRS 115 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSCCC
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCcch
Confidence 5899999999999997521 0 01124578999999999999999999883 31 1 244555554333
Q ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh---hHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 70 ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP---KVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~---~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
.. .....+...........-...... ......++.+||+|+++.... ..+..+..++.... ..||+++.+..
T Consensus 116 ~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~--~~iIli~~~~~ 190 (516)
T 1sxj_A 116 KT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTS--TPLILICNERN 190 (516)
T ss_dssp HH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCS--SCEEEEESCTT
T ss_pred HH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence 32 222222222111100000000000 001135678999999966432 22344544444332 23444444322
Q ss_pred HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHH
Q 042863 147 VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTL 210 (680)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~ 210 (680)
.............+.+++++.++..+++...+.......++ +.+..|++.++|.+. ++..+
T Consensus 191 ~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 191 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred CccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 11111111233568999999999999998877655444443 456789999999665 44444
No 169
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=3.3e-08 Score=89.03 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=51.7
Q ss_pred cceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEecccccccccc-ccCcccccceeeccc
Q 042863 432 MRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDS-GIGCLVSLRCLIISH 510 (680)
Q Consensus 432 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~ 510 (680)
.+.+++++|. +..+|..+ .++|++|+|++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3456666552 34455433 2556666666665444445555566666666666666555533 234555555555555
Q ss_pred ccCcccchh-hccCCcccceeeccccc
Q 042863 511 CRNLEYLFD-DIDQLRVLRSLLIAGCP 536 (680)
Q Consensus 511 ~~~~~~~~~-~~~~l~~L~~L~l~~~~ 536 (680)
|. ++.+++ .+..+++|+.|++++|+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 43 223332 24445555555555544
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=7.3e-10 Score=113.47 Aligned_cols=155 Identities=20% Similarity=0.138 Sum_probs=104.2
Q ss_pred CcceeEEEeCCCCcccc-----ccccc-CcCCcceeccccccCCCccChh-hcCCCCCcEEecCCccccccCcccc----
Q 042863 406 SQFLRVLNLSGSAIEAL-----PKEIG-NLKHMRYLDLSRNYKIKKLPNA-ICELQSLQTLNLEECLELEELPKDI---- 474 (680)
Q Consensus 406 ~~~L~~L~L~~~~~~~~-----~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~---- 474 (680)
+++|+.|+|++|.++.. ...+. .+++|++|++++|.+....... ...+++|+.|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998832 22233 3479999999999654332222 2345689999999986554322222
Q ss_pred -cccCcccEEEecccccccc-----ccccCcccccceeecccccCcc----cchhhccCCcccceeecccccCcc----c
Q 042863 475 -RYLVSLRVFEVTTKQKSLQ-----DSGIGCLVSLRCLIISHCRNLE----YLFDDIDQLRVLRSLLIAGCPCLI----S 540 (680)
Q Consensus 475 -~~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~ 540 (680)
...++|+.|++++|.++.. ...+..+++|+.|++++|..-. .+...+..+++|+.|++++|.+.. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457789999998887653 3344567788888888876322 234556667788888888887643 2
Q ss_pred CCccCCCCCCcCeEeecCCC
Q 042863 541 LPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 541 ~~~~~~~~~~L~~L~l~~~~ 560 (680)
++..+..+++|++|++++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 34445566788888888875
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.72 E-value=1.7e-07 Score=92.47 Aligned_cols=188 Identities=19% Similarity=0.149 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG-------ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
++|.+++++.+.+.+...... +-...+.+.|+|++|+|||++|+.++. ..... .+.+++..-..
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~~~---- 89 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSELVK---- 89 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC----
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHHHH----
Confidence 479999999998887542000 012345799999999999999999987 33222 33343322110
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhHHHHHHHhc---C--CCCCCCE
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKVWDKLKSLL---S--GGAKGSK 137 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~~~~l~~~l---~--~~~~~~~ 137 (680)
. ............+.......+.+|++|+++.. +......+..++ . ....+..
T Consensus 90 ----------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 90 ----------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp ----------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred ----------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 0 00111122222333333456689999999432 111122232222 2 1233566
Q ss_pred EEEecCchHHHHh-hccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHHh
Q 042863 138 ILVTTRSNKVASV-MGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLGS 212 (680)
Q Consensus 138 iiiTsR~~~~~~~-~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~ 212 (680)
||.||........ .....+. ..+.+++.+.++..++++............ ....+++.+.| .|..+..+..
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHHHHHHHH
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHHHHHHHH
Confidence 7777775532111 1110111 358899999999999999887554333222 23577777777 5656555543
No 172
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=3.8e-08 Score=88.98 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=51.4
Q ss_pred ceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccc-cCcccccceeecccc
Q 042863 433 RYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSG-IGCLVSLRCLIISHC 511 (680)
Q Consensus 433 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~ 511 (680)
+.+++++|. ++.+|..+. ++|++|+|++|.+.+..|..+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455665552 345554332 5566666666654444455555666666666666665555332 344555555555554
Q ss_pred cCcccchhh-ccCCcccceeeccccc
Q 042863 512 RNLEYLFDD-IDQLRVLRSLLIAGCP 536 (680)
Q Consensus 512 ~~~~~~~~~-~~~l~~L~~L~l~~~~ 536 (680)
. ++.+++. +..+++|+.|++++|+
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCC
Confidence 3 2233332 4445555555555544
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.71 E-value=9.6e-08 Score=96.19 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=105.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+++.++.+.+++.. +..+..+.++|++|+|||++|+.+++ ... ..+++++.+.. . ...++..+..
T Consensus 28 ivg~~~~~~~l~~~l~~-----~~~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~-~-~~~i~~~~~~ 95 (324)
T 3u61_B 28 CILPAFDKETFKSITSK-----GKIPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDC-K-IDFVRGPLTN 95 (324)
T ss_dssp SCCCHHHHHHHHHHHHT-----TCCCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTC-C-HHHHHTHHHH
T ss_pred HhCcHHHHHHHHHHHHc-----CCCCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEccccc-C-HHHHHHHHHH
Confidence 58999999999999975 23345778889999999999999987 332 22445554331 1 2222222222
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-hhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhccCCCCC
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-PKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMGTRGGTT 158 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~~~~~~~ 158 (680)
..... ...+.+.++|+||++... ....+.+...+.....+.++|+||.... +..... .+..
T Consensus 96 ~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~--sR~~ 158 (324)
T 3u61_B 96 FASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ--SRCR 158 (324)
T ss_dssp HHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH--HHSE
T ss_pred HHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH--hhCc
Confidence 11000 012367899999997765 5555666666655445667888777653 111111 1225
Q ss_pred ceeCCCCChhhHHHH-------HHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHH
Q 042863 159 GYNLQGLPLEDCLSL-------FMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVR 208 (680)
Q Consensus 159 ~~~l~~l~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~ 208 (680)
.+.+++.+.++..++ +...+.......++ .+.+..+++.++|.+..+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 689999998884433 33333222222222 2556789999999887443
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.71 E-value=2.5e-07 Score=90.45 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=94.3
Q ss_pred CCCchhHHHHHHH-------HHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIE-------ALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~-------~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
++|+..+++.+.+ .+.. ......+.+.++|++|+|||++|+.+++. .. .+ .+.+++...
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~---~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~------ 100 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKN---SDRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK------ 100 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHH---CSSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG------
T ss_pred CCCccHHHHHHHHHHHHHHHHHhc---cCCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH------
Confidence 4667776666665 3322 12356789999999999999999999883 22 22 233333210
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC----------ChhHHHHHHHhcCC---CCCCCEEEE
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE----------DPKVWDKLKSLLSG---GAKGSKILV 140 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~----------~~~~~~~l~~~l~~---~~~~~~iii 140 (680)
+... ........+...+.........+|++|+++.. .......+...+.. .+....||.
T Consensus 101 -------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 101 -------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 0000 00000112223333344466889999998431 22233444444443 223444666
Q ss_pred ecCchHHHHhhccCCC-CCceeCCCCCh-hhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC
Q 042863 141 TTRSNKVASVMGTRGG-TTGYNLQGLPL-EDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG 202 (680)
Q Consensus 141 TsR~~~~~~~~~~~~~-~~~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 202 (680)
||.............+ ...+.++++++ ++...++.... ... ++....+++.+.|
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-----~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-----NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-----CSC---HHHHHHHHHHHTT
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-----CCC---HHHHHHHHHHhcC
Confidence 7776654333222222 24588999988 66666665532 112 2556788888887
No 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.6e-07 Score=95.14 Aligned_cols=176 Identities=13% Similarity=0.178 Sum_probs=109.6
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCCcCCHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
++|.+..++.+...+.. ++.+.+.++|++|+||||+|+.++.... ...+ ..+..++.+....
T Consensus 27 ~~g~~~~~~~L~~~i~~------g~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~---------- 89 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDE------GKLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG---------- 89 (340)
T ss_dssp CCSCHHHHHHHHHHHHT------TCCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS----------
T ss_pred hcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc----------
Confidence 47888999999988865 2333489999999999999999987421 1111 1122333322111
Q ss_pred HhcCCCCCCcCHHHHHHHHHHHh------CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchH-HHHhhc
Q 042863 80 SITGQNQGDLDIEQLQRILRVCL------NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNK-VASVMG 152 (680)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~l------~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~-~~~~~~ 152 (680)
.+++...+.... .+.+-++|+|+++.......+.+...+......+++|+++.... +.....
T Consensus 90 -----------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 90 -----------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -----------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -----------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 222222222211 23467899999987766666666666665555666777765442 111111
Q ss_pred cCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHH
Q 042863 153 TRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRT 209 (680)
Q Consensus 153 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 209 (680)
.+...+.+.++++++..+.+...+.......+ ++.++.+++.++|.+.-+..
T Consensus 159 --sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 159 --SQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp --TTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHHH
T ss_pred --hhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 23356889999999999999887744433333 25668899999999875433
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.69 E-value=2.7e-07 Score=96.43 Aligned_cols=166 Identities=17% Similarity=0.097 Sum_probs=99.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcC--CcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHF--ELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
...++|+|++|+|||+||+.+++ .....+ ..++++++.. ...++...+... .. ..+.+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSEK------FLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHHH------HHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHHH------HHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56899999999999999999998 443333 2356665542 233344333221 11 12233333
Q ss_pred CceEEEEEecCCCCCh--hHHHHHHHhcCC-CCCCCEEEEecCchHH------HHhhccCCCCCceeCCCCChhhHHHHH
Q 042863 104 GKRYLLVMDDVWNEDP--KVWDKLKSLLSG-GAKGSKILVTTRSNKV------ASVMGTRGGTTGYNLQGLPLEDCLSLF 174 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~--~~~~~l~~~l~~-~~~~~~iiiTsR~~~~------~~~~~~~~~~~~~~l~~l~~~~~~~l~ 174 (680)
....+|++||++.... ...+.+...+.. ...+..||+||.+... .........-..+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3567999999976432 233334444332 2335678888876321 111110111145789999999999999
Q ss_pred HHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 175 MKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
.+.+.......++ +.+..|++.++|++.-+..+.
T Consensus 273 ~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 273 RKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHH
Confidence 9887544333333 456789999999998655443
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.68 E-value=3.1e-07 Score=91.83 Aligned_cols=178 Identities=11% Similarity=0.130 Sum_probs=100.8
Q ss_pred CCCchhHHHHHHHHHhcCC---------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCC--cEEEEEeCCcCC
Q 042863 1 IIGRDKDREKIIEALMQTS---------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFE--LKIWICISEDFG 69 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~---------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~--~~~~~~~~~~~~ 69 (680)
++|.++..+.+.+.+.... -........+.++|++|+|||++|+.+++......... .++.++...
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--- 109 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD--- 109 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG---
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH---
Confidence 5788888888887764210 00123455799999999999999999987422211111 233333221
Q ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC---------ChhHHHHHHHhcCCCCCCCEEEE
Q 042863 70 ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE---------DPKVWDKLKSLLSGGAKGSKILV 140 (680)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~---------~~~~~~~l~~~l~~~~~~~~iii 140 (680)
+... ............+... ...+|++|+++.. .......+...+.....+..+|.
T Consensus 110 -----------l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 110 -----------LVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp -----------TCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred -----------hhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 1000 0011112222223222 3459999999733 55555666666666666777888
Q ss_pred ecCchHHHHhhcc----CCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHh
Q 042863 141 TTRSNKVASVMGT----RGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKK 199 (680)
Q Consensus 141 TsR~~~~~~~~~~----~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 199 (680)
||........... ..+. ..+.+++++.++..+++...+.......++ +....+++.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~---~~~~~l~~~ 235 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTP---EAETALRAY 235 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECH---HHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHH
Confidence 8765432211100 0111 568999999999999999887654433333 333444443
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.68 E-value=7.4e-07 Score=86.65 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=102.8
Q ss_pred CCCchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.++..+.+.+.+..... .+...++.+.++|++|+|||++|+.+++ .... ..+.+++......
T Consensus 8 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~---~~~~~~~~~~~~~---- 78 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQV---PFLAMAGAEFVEV---- 78 (262)
T ss_dssp SCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTC---CEEEEETTTTSSS----
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEechHHHHhh----
Confidence 47888888887766542110 0113456799999999999999999987 3322 2445554432110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC------------h---hHHHHHHHhcCC--CCCCCE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED------------P---KVWDKLKSLLSG--GAKGSK 137 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~------------~---~~~~~l~~~l~~--~~~~~~ 137 (680)
........+...+.......+.+|++|+++... . ..+..+...+.. ...+..
T Consensus 79 -----------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 147 (262)
T 2qz4_A 79 -----------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVI 147 (262)
T ss_dssp -----------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEE
T ss_pred -----------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEE
Confidence 001111222233333334567899999996531 1 112223332332 123556
Q ss_pred EEEecCchHHHH-hhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHHHh
Q 042863 138 ILVTTRSNKVAS-VMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTLGS 212 (680)
Q Consensus 138 iiiTsR~~~~~~-~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~~ 212 (680)
+|.||....... .....++. ..+.++..+.++..++++..+........ .......+++.+.|.+- .+..+..
T Consensus 148 vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp EEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 666776543211 11111122 45789999999999999987754433222 22234788888888754 5555443
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.67 E-value=4e-07 Score=91.72 Aligned_cols=175 Identities=12% Similarity=0.078 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-------------------cCCcEEEEEe
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-------------------HFELKIWICI 64 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~~~~~~~~~ 64 (680)
.++..+.+.+.+.. +.-+..+.++|++|+|||++|+.+++...-.. .++.+.++..
T Consensus 7 ~~~~~~~l~~~i~~-----~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp GHHHHHHHHHHHHT-----TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred hHHHHHHHHHHHHc-----CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 45666777777754 23345799999999999999999987421111 0112223322
Q ss_pred CCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh----CCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEE
Q 042863 65 SEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCL----NGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILV 140 (680)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l----~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iii 140 (680)
.. .......+++...+.... .+++-++|+|+++.......+.+...+...+..+.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 011223333333222211 24567999999988777777777777776666677777
Q ss_pred ecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 141 TTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 141 TsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
+|.++. +..... .+...+.++++++++..+++.... ..+ ++.+..+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~--SRc~~~~~~~~~~~~~~~~L~~~~-----~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLR--SRCRLHYLAPPPEQYAVTWLSREV-----TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHH--TTSEEEECCCCCHHHHHHHHHHHC-----CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHh--hcceeeeCCCCCHHHHHHHHHHhc-----CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 776553 222222 344679999999999999998875 112 2556789999999998665443
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.64 E-value=4.9e-08 Score=85.24 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+..+++++.+.+.... .....|.|+|++|+|||++|+.+++... ....+ .+ +++....+.
T Consensus 3 iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~---------- 65 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA---------- 65 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS----------
T ss_pred ceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc----------
Confidence 6899999999999987643 2234689999999999999999987321 12223 33 666543322
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN 145 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~ 145 (680)
.. ....+... ..-+|++|+++.........+...+.......++|.||...
T Consensus 66 --------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp --------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred --------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 00 11111111 23478999998887777777777775555567777777643
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.64 E-value=1.2e-06 Score=87.58 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=105.9
Q ss_pred CCCchhHHHHHHHHHhc------CCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQ------TSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~------~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|-++.++.+.+.+.. ...+....++.+.++|++|+|||++|+.+++. ... ...+.+++..-..
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~~----- 84 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLVS----- 84 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSCC-----
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHHh-----
Confidence 46788888888877741 11112234578999999999999999999973 211 1233344332110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-------Chh----HHHHHHHhcCC---CCCCCEEEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-------DPK----VWDKLKSLLSG---GAKGSKILV 140 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-------~~~----~~~~l~~~l~~---~~~~~~iii 140 (680)
.........+...+.......+.+|++|+++.. ... ....+...+.. ...+..||.
T Consensus 85 ----------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 85 ----------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp ----------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred ----------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 001112222222333333456789999999542 001 11222222222 234555665
Q ss_pred ecCchHH-HHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC-hhHHHHHHhhh
Q 042863 141 TTRSNKV-ASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI-PLAVRTLGSLL 214 (680)
Q Consensus 141 TsR~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~~l 214 (680)
||..+.. ......+ -...+.++..+.++..++++........... +.....|++.+.|. +..+..++...
T Consensus 155 atn~~~~ld~al~rR-f~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 155 ATNIPWVLDSAIRRR-FEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp EESCTTTSCHHHHHT-CCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHhh-cCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 6654421 1111111 1145789999999999999987754432222 25568899999886 66677666543
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.64 E-value=6.6e-07 Score=89.70 Aligned_cols=188 Identities=15% Similarity=0.118 Sum_probs=107.1
Q ss_pred CCCchhHHHHHHHHHh-------cCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALM-------QTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~-------~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
++|.++.++.+.+.+. ... ......+.+.++|++|+|||++|+.+++ ..... .+.+++.. +
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~v~~~~------l 87 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSSD------L 87 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCC-TTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCE---EEEEEHHH------H
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHh-cCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCC---EEEEchHH------H
Confidence 4788999999988883 111 2233457899999999999999999987 33222 33343321 1
Q ss_pred HHHHHHHhcCCCCCCcCHHH-HHHHHHHHhCCceEEEEEecCCCCCh-----------hHHHHHHHhcC---CCCCCCEE
Q 042863 74 MTKIIKSITGQNQGDLDIEQ-LQRILRVCLNGKRYLLVMDDVWNEDP-----------KVWDKLKSLLS---GGAKGSKI 138 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~llvlD~~~~~~~-----------~~~~~l~~~l~---~~~~~~~i 138 (680)
.... ....+. +...+.......+.+|++|+++.... .....+...+. ....+..|
T Consensus 88 ----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 88 ----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp ----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred ----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 0000 011122 22222233345668999999964211 11233333332 23345666
Q ss_pred EEecCchHH-HHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHHhhh
Q 042863 139 LVTTRSNKV-ASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLGSLL 214 (680)
Q Consensus 139 iiTsR~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~~l 214 (680)
|.||..+.. ......+ -...+.++..+.++..++++..+........ +.....|++.+.| .+..+..++...
T Consensus 158 i~atn~~~~ld~al~~R-f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRR-FERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp EEEESCGGGSCHHHHHH-CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred EEecCChhhCCHHHHcc-cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 667765421 1111111 0145788999999999999998755432222 2456789999887 566666665433
No 183
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=6.8e-08 Score=98.41 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=47.5
Q ss_pred hccCcceeEEEeCC-CCccccc-ccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 403 ISKSQFLRVLNLSG-SAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 403 ~~~~~~L~~L~L~~-~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
+..+.+|+.|+|++ |.++.++ ..+.++++|++|+|++|.+.+..|..|..+++|+.|+|++|.+. .+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCCc
Confidence 55556666666664 6666544 34556666666666666544444445556666666666665433 344332222226
Q ss_pred cEEEecccccc
Q 042863 481 RVFEVTTKQKS 491 (680)
Q Consensus 481 ~~L~l~~~~~~ 491 (680)
+.|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 66666655544
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.61 E-value=8.4e-07 Score=90.02 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=104.6
Q ss_pred CCCchhHHHHHHHHHhcC------CCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQT------SSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.+..++.+.+.+... ........+.+.++|++|+|||++|+.+++ ..... .+.+++. .+
T Consensus 53 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~---~~~v~~~------~l- 120 (355)
T 2qp9_X 53 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS------DL- 120 (355)
T ss_dssp SCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCE---EEEEEHH------HH-
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEeeHH------HH-
Confidence 578899999998877311 001123346799999999999999999998 33222 2333322 11
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChh-----------HHHHHHHhcC---CCCCCCEEEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPK-----------VWDKLKSLLS---GGAKGSKILV 140 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~-----------~~~~l~~~l~---~~~~~~~iii 140 (680)
.... .......+...+.......+.+|++|+++..... ....+...+. ....+..||.
T Consensus 121 ---~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~ 192 (355)
T 2qp9_X 121 ---VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 192 (355)
T ss_dssp ---HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_pred ---hhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEe
Confidence 1000 0111122222233333456789999999653211 1222333332 2234555666
Q ss_pred ecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHHhh
Q 042863 141 TTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLGSL 213 (680)
Q Consensus 141 TsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~~ 213 (680)
||..+. +......+ -...+.++..+.++..++++........... +.....|++.+.| .+..|..++..
T Consensus 193 atn~~~~ld~al~rR-f~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 193 ATNIPWQLDSAIRRR-FERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp EESCGGGSCHHHHHT-CCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ecCCcccCCHHHHcc-cCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666542 11111111 1145789999999999999988754432222 2456789999988 56667666643
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.57 E-value=7.8e-07 Score=90.48 Aligned_cols=189 Identities=13% Similarity=0.071 Sum_probs=106.0
Q ss_pred CCCchhHHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTS------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|++..++.+.+.+.... .......+.+.|+|++|+|||++|+.++. .... ..+.++++.....
T Consensus 86 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~---~~~~i~~~~l~~~---- 156 (357)
T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGA---TFFSISASSLTSK---- 156 (357)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTC---EEEEEEGGGGCCS----
T ss_pred hCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCC---eEEEEehHHhhcc----
Confidence 5789999999988875310 00123457899999999999999999987 3222 2345554321110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-----------hhHHHHHHHhcCC----CCCCCEEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-----------PKVWDKLKSLLSG----GAKGSKIL 139 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-----------~~~~~~l~~~l~~----~~~~~~ii 139 (680)
........+...+.......+.+|++|+++... ......+...+.. ...+..||
T Consensus 157 -----------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI 225 (357)
T 3d8b_A 157 -----------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVV 225 (357)
T ss_dssp -----------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEE
T ss_pred -----------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 000001111122222223567899999994310 0111223222222 22345566
Q ss_pred EecCchH-HHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHHhhh
Q 042863 140 VTTRSNK-VASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLGSLL 214 (680)
Q Consensus 140 iTsR~~~-~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~~l 214 (680)
.||.... +...... +. ..+.++..+.++..+++...+........ ++....|++.+.| .+..+..++...
T Consensus 226 ~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 226 GATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp EEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5665442 1111111 12 35789999999999999887754432222 2566889999988 666777766543
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.55 E-value=1.2e-06 Score=88.16 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC
Q 042863 7 DREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ 86 (680)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (680)
....+.+..... ......++|+|++|+|||+||+.+++ .....-..++++++.. ....+...+..
T Consensus 22 a~~~~~~~~~~~----~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~~~------~~~~~~~~~~~--- 86 (324)
T 1l8q_A 22 AYEVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSADD------FAQAMVEHLKK--- 86 (324)
T ss_dssp HHHHHHHHHHTT----TTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEHHH------HHHHHHHHHHH---
T ss_pred HHHHHHHHHhCc----CCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEHHH------HHHHHHHHHHc---
Confidence 344455555431 12346799999999999999999998 3322223456776532 22333333211
Q ss_pred CCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh--hHHHHHHHhcCC-CCCCCEEEEecCchHH-----HHhhc-cCCCC
Q 042863 87 GDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP--KVWDKLKSLLSG-GAKGSKILVTTRSNKV-----ASVMG-TRGGT 157 (680)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~--~~~~~l~~~l~~-~~~~~~iiiTsR~~~~-----~~~~~-~~~~~ 157 (680)
...... .+... ...+|++||++.... .....+...+.. ...+..+|+|+.++.. ..... .....
T Consensus 87 --~~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~ 159 (324)
T 1l8q_A 87 --GTINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG 159 (324)
T ss_dssp --TCHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS
T ss_pred --CcHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc
Confidence 011111 22222 367999999976432 223334333322 1234567777754321 11111 10111
Q ss_pred CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHH
Q 042863 158 TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRT 209 (680)
Q Consensus 158 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~ 209 (680)
..+.+++ +.++..+++...+.......+ ++....|++.+ |+...+..
T Consensus 160 ~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 160 ILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp EEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHHHH
T ss_pred eEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHHHH
Confidence 4588999 999999999988754443333 35678899999 88764433
No 187
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=5.7e-08 Score=98.50 Aligned_cols=14 Identities=7% Similarity=0.266 Sum_probs=7.5
Q ss_pred hhhcCCccEEEEec
Q 042863 376 LSDLGRVRTIFFSI 389 (680)
Q Consensus 376 ~~~~~~L~~L~l~~ 389 (680)
...+++|+.|.+..
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 33455666665543
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=1.2e-07 Score=96.04 Aligned_cols=155 Identities=13% Similarity=0.078 Sum_probs=74.9
Q ss_pred hccCcceeEEEeCCCCcc----------cccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcc
Q 042863 403 ISKSQFLRVLNLSGSAIE----------ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPK 472 (680)
Q Consensus 403 ~~~~~~L~~L~L~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 472 (680)
+..+++|+.|.+.+.... .+...+..+|+|+.|++++|... .++. + .+++|+.|+|..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445556666665443211 12223345566666666655211 2222 2 255666666655543222222
Q ss_pred ccc--ccCcccEEEeccc--ccc------cccccc--CcccccceeecccccCcccchhhc---cCCcccceeecccccC
Q 042863 473 DIR--YLVSLRVFEVTTK--QKS------LQDSGI--GCLVSLRCLIISHCRNLEYLFDDI---DQLRVLRSLLIAGCPC 537 (680)
Q Consensus 473 ~~~--~l~~L~~L~l~~~--~~~------~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~ 537 (680)
.+. .+++|+.|+++.+ ... .+...+ ..+++|+.|.+.+|......+..+ ..+++|+.|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 222 4566666665421 110 111111 235677777776665433222222 2466777777777655
Q ss_pred ccc----CCccCCCCCCcCeEeecCCC
Q 042863 538 LIS----LPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 538 ~~~----~~~~~~~~~~L~~L~l~~~~ 560 (680)
... ++..+.++++|+.|++++|.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 432 33333456777777777663
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.49 E-value=2.2e-07 Score=85.08 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=37.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
|+||+++++.+.+.+.. ...+.+.|+|++|+|||++|+.+++.
T Consensus 24 ~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999965 33457899999999999999999873
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.49 E-value=2.9e-06 Score=87.50 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=102.1
Q ss_pred CCCchhHHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTS------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|++..++.+.+.+.... .......+.+.|+|++|+|||++|+.++. +... .++.+++..-...
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~---~~~~v~~~~l~~~---- 187 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNA---TFFNISAASLTSK---- 187 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTC---EEEEECSCCC-------
T ss_pred hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcC---cEEEeeHHHhhcc----
Confidence 5799999999998883211 00112346899999999999999999987 3222 2334444321110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------ChhHHHHHHHhcC---C-CCCCCEEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPKVWDKLKSLLS---G-GAKGSKIL 139 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~~~~~l~~~l~---~-~~~~~~ii 139 (680)
. .......+...+.......+.+|++|+++.. .......+...+. . ......||
T Consensus 188 --~---------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 188 --Y---------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp ---------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred --c---------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 0 0001112222222222345679999999542 1111112222221 1 12345566
Q ss_pred EecCchH-HHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHHHhh
Q 042863 140 VTTRSNK-VASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTLGSL 213 (680)
Q Consensus 140 iTsR~~~-~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~~~ 213 (680)
.||.... +...... +. ..+.++..+.++..+++...+........ ++.+..|++.+.|..- ++..++..
T Consensus 257 ~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 257 GATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp EEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5665432 1111111 22 35789999999999999988755433322 2456789999988554 66555543
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.48 E-value=3.3e-06 Score=83.68 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=102.4
Q ss_pred CCCchhHHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTS------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.+..++.+.+.+.... .+.....+.+.++|++|+|||++|+.++. .... ..+.+++.....
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~---~~~~i~~~~l~~----- 92 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSA---TFLNISAASLTS----- 92 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTC---EEEEEESTTTSS-----
T ss_pred hCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCC---CeEEeeHHHHhh-----
Confidence 5789999999988874310 00112356899999999999999999987 3322 233444432110
Q ss_pred HHHHHHhcCCCCCCcCHHHHH-HHHHHHhCCceEEEEEecCCCCC-----------hhHHHHHHHh---cCCC--CCCCE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQ-RILRVCLNGKRYLLVMDDVWNED-----------PKVWDKLKSL---LSGG--AKGSK 137 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~llvlD~~~~~~-----------~~~~~~l~~~---l~~~--~~~~~ 137 (680)
. ......... ..+.......+.+|++|+++... ......+... ++.. ..+..
T Consensus 93 ---------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 93 ---------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp ---------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred ---------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 0 011122222 22222234567899999995421 1111122222 2221 13455
Q ss_pred EEEecCchH-HHHhhccCCCCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh-HHHHHHh
Q 042863 138 ILVTTRSNK-VASVMGTRGGTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL-AVRTLGS 212 (680)
Q Consensus 138 iiiTsR~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~l~~~~~ 212 (680)
||.||..+. +......+ -...+.++..+.++..+++............ ++....+++.+.|.+- .+..++.
T Consensus 162 vi~~tn~~~~l~~~l~~R-~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRR-FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEEEESCGGGBCHHHHHH-CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEeecCChhhCCHHHHhh-CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666776542 11111111 0145778888888889998887754433222 2556789999999875 6655554
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.47 E-value=4.6e-06 Score=87.30 Aligned_cols=190 Identities=15% Similarity=0.164 Sum_probs=104.4
Q ss_pred CCCchhHHHHHHHHHhcC------CCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQT------SSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.+...+.+.+.+..+ ..+.....+.+.++|++|+|||++|+.++.. .. ...++.++... +.
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~----l~ 205 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD----LV 205 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC-------
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHH----HH
Confidence 478888888888877310 0011234578999999999999999999973 21 11233332211 11
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh-----------hHHHHHHHhcCC---CCCCCEEEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP-----------KVWDKLKSLLSG---GAKGSKILV 140 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~-----------~~~~~l~~~l~~---~~~~~~iii 140 (680)
.... . ........+.. ......+.+|++|+++.... .....+...+.. ...+..||.
T Consensus 206 ~~~~----g--~~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 206 SKWL----G--ESEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp ------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred hhhc----c--hHHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 1111 0 11112222222 22235678999999964311 112233333332 234566676
Q ss_pred ecCchHHHH-hhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHHhhh
Q 042863 141 TTRSNKVAS-VMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLGSLL 214 (680)
Q Consensus 141 TsR~~~~~~-~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~~l 214 (680)
||..+.... .... +. ..+.++..+.++..++++........... +.....|++.+.| .+..|..++...
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 776543211 1111 22 35788888999999999888754322212 2456789999988 566666665433
No 193
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.41 E-value=1.7e-07 Score=81.58 Aligned_cols=109 Identities=8% Similarity=0.089 Sum_probs=67.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+++.++++.+.+.... .....|.|+|++|+|||++|+.+++.. . ..+.+++.. ... ..
T Consensus 6 ~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~--~----~~~~~~~~~---~~~---~~--- 66 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNG--T----PWVSPARVE---YLI---DM--- 66 (143)
T ss_dssp --CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTT--S----CEECCSSTT---HHH---HC---
T ss_pred ceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhC--C----CeEEechhh---CCh---Hh---
Confidence 5899999999999887633 223458899999999999999988732 2 233333332 111 00
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-CCCCEEEEecCc
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-AKGSKILVTTRS 144 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-~~~~~iiiTsR~ 144 (680)
....+. . ...-++++|+++.........+...+... ..+.++|.||..
T Consensus 67 -------------~~~~~~-~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 -------------PMELLQ-K--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -------------HHHHHH-H--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -------------hhhHHH-h--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 011111 1 22357889999887776666666655542 345778877754
No 194
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.40 E-value=7.1e-07 Score=90.79 Aligned_cols=102 Identities=22% Similarity=0.165 Sum_probs=60.7
Q ss_pred eeccccccCCCccChhhcCCCCCcEEecCC-ccccccCcccccccCcccEEEeccccccccc-cccCcccccceeecccc
Q 042863 434 YLDLSRNYKIKKLPNAICELQSLQTLNLEE-CLELEELPKDIRYLVSLRVFEVTTKQKSLQD-SGIGCLVSLRCLIISHC 511 (680)
Q Consensus 434 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~ 511 (680)
.++.++++.+..+|. +..+++|++|+|++ |.+....+..++.+++|+.|++++|.++.++ ..+.++++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555423555676 77777777777775 5444333355677777777777777776653 34566777777777765
Q ss_pred cCcccchhhccCCcccceeecccccC
Q 042863 512 RNLEYLFDDIDQLRVLRSLLIAGCPC 537 (680)
Q Consensus 512 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 537 (680)
. ++.+|+.......|+.|++.+|.+
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred c-cceeCHHHcccCCceEEEeeCCCc
Confidence 4 344444322222266666666654
No 195
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.38 E-value=6.1e-06 Score=85.43 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=41.5
Q ss_pred ccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc----CCCCCCeEEEcCCc
Q 042863 579 SNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE----DMLHLKTLRIRGCP 645 (680)
Q Consensus 579 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~L~~l~l~~c~ 645 (680)
.+..|.+|+++.|.. .++.+.+. ++.+|.+|+.+.|..+ ++.+.. +|.+|+.+.+.+..
T Consensus 306 aF~~c~~L~~i~lp~--~v~~I~~~----aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 306 VFAGCISLKSIDIPE--GITQILDD----AFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred eecCCCCcCEEEeCC--cccEehHh----HhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 456678888888865 35666643 4568888998888654 566654 67788888887764
No 196
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=1.5e-07 Score=83.44 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=18.3
Q ss_pred CccceeeeccCCCCCC-----CCcCCCCCCeEEEcCCccccc
Q 042863 613 QALEGLVIGNCPKLLS-----LPEDMLHLKTLRIRGCPALSD 649 (680)
Q Consensus 613 ~~L~~L~l~~~~~~~~-----l~~~~~~L~~l~l~~c~~l~~ 649 (680)
++|++|+|++|+.+++ +. .+++|+.|++++|+.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCc
Confidence 3455555555554442 22 345555555555555544
No 197
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=3.2e-06 Score=83.28 Aligned_cols=149 Identities=10% Similarity=-0.019 Sum_probs=96.3
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchh-hhhcCCcEEEEEeCC-cCCHHHHHHHHHHH
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQR-VEEHFELKIWICISE-DFGERQIMTKIIKS 80 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (680)
|.++.++.+.+.+.. +..+...++|++|+|||++|+.+++... ....++.+.+++... ...+ +..++++..
T Consensus 1 g~~~~~~~L~~~i~~------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~i-d~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI-DDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCH-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHC------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCH-HHHHHHHHH
Confidence 567788888888865 2267899999999999999999987311 111234455665432 2222 223334333
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch-HHHHhhccCCCCCc
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN-KVASVMGTRGGTTG 159 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~-~~~~~~~~~~~~~~ 159 (680)
..... ..+++-++|+|+++.......+.+...+...+..+.+|++|.++ .+...+.. + .
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R--~ 133 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R--V 133 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T--S
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e--e
Confidence 32110 12456789999998888777777877777766677777766554 23333332 2 7
Q ss_pred eeCCCCChhhHHHHHHHHh
Q 042863 160 YNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 160 ~~l~~l~~~~~~~l~~~~~ 178 (680)
+.++++++++..+.+....
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 8999999999999998876
No 198
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.33 E-value=3e-06 Score=83.83 Aligned_cols=197 Identities=11% Similarity=0.103 Sum_probs=102.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+...++++.+.+...+ .....|.|+|++|+|||++|+.+++. ....-...+.+++.... ...+. .+
T Consensus 4 iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~--~~~~~~~~v~v~~~~~~--~~l~~---~~ 72 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHAC--SARSDRPLVTLNCAALN--ESLLE---SE 72 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHH--SSCSSSCCCEEECSSCC--HHHHH---HH
T ss_pred cEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHh--CcccCCCeEEEeCCCCC--hHHHH---HH
Confidence 6899999999999887743 23356889999999999999999873 21111224456665432 22222 22
Q ss_pred hcCCCCCCcCHH--HHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCchHH
Q 042863 81 ITGQNQGDLDIE--QLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~~~~--~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~~ 147 (680)
+.........-. .....+... ..-+|++|+++.........+...+... ....+||.||.....
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~ 149 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA 149 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH
T ss_pred hcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH
Confidence 322211110000 001111111 1246889999887766656665555432 235678877765411
Q ss_pred HHh--------hccCCCCCceeCCCCC--hhhHHHHHHHHhc----ccCCCCCchHHHHHHHHHHhh-CCChhHHHHHH
Q 042863 148 ASV--------MGTRGGTTGYNLQGLP--LEDCLSLFMKCAF----KEERDKHPNLVKIGEEIVKKC-GGIPLAVRTLG 211 (680)
Q Consensus 148 ~~~--------~~~~~~~~~~~l~~l~--~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~i~~~~-~g~Pl~l~~~~ 211 (680)
... ...+-....+.++++. .+|...++..... ........-.++....+.++. .|+..-+..+.
T Consensus 150 ~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l 228 (304)
T 1ojl_A 150 EEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAI 228 (304)
T ss_dssp HHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHH
T ss_pred HHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 110 0000012447899999 4565555544321 111111111224445666655 56665444443
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.32 E-value=8.9e-06 Score=80.51 Aligned_cols=181 Identities=16% Similarity=0.138 Sum_probs=98.9
Q ss_pred CCCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
++|.++.++.+.+.+.... .-+-...+.+.++|++|+|||++|+.++. ..... .+.+++ ..+
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~---~i~v~~------~~l 85 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN---FISIKG------PEL 85 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE---EEEECH------HHH
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC---EEEEEh------HHH
Confidence 4688888888888775310 00112346799999999999999999997 33222 223322 122
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC--------------hhHHHHHHHhcCC--CCCCCE
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED--------------PKVWDKLKSLLSG--GAKGSK 137 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~--------------~~~~~~l~~~l~~--~~~~~~ 137 (680)
.. ...... . ..+...+.......+.++++|+++... ......+...+.. ...+..
T Consensus 86 ~~----~~~g~~--~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 86 LT----MWFGES--E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp HH----HHHTTC--T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred Hh----hhcCch--H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 22 221111 1 112233333334567899999995310 1112334333332 223566
Q ss_pred EEEecCchHHHHh-hccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 138 ILVTTRSNKVASV-MGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 138 iiiTsR~~~~~~~-~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
||.||..+..... ....++. ..+.++..+.++..++++............. ...++..+.|.|-
T Consensus 157 vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred EEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 7777765532211 1111122 3578999999999999988775443222222 2456667777654
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.32 E-value=1e-05 Score=78.15 Aligned_cols=188 Identities=13% Similarity=0.120 Sum_probs=99.0
Q ss_pred CCCchhHHHHHHHHHhcCC------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTS------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.++..+.+.+.+.... .-+...++.+.|+|++|+|||++|+.++.. .... .+.++...-..
T Consensus 14 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~----- 83 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE----- 83 (257)
T ss_dssp SCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT-----
T ss_pred hcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH-----
Confidence 4677877777766543211 001123456999999999999999999873 2221 33443322110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC----------h----hHHHHHHHhcCC--CCCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED----------P----KVWDKLKSLLSG--GAKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~----------~----~~~~~l~~~l~~--~~~~~~i 138 (680)
.........+...+.......+.++++|+++... . .....+...+.. ...+..|
T Consensus 84 ----------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 153 (257)
T 1lv7_A 84 ----------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 153 (257)
T ss_dssp ----------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE
T ss_pred ----------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE
Confidence 0011122333334444444567899999983210 0 112223222322 1234556
Q ss_pred EEecCchHHH-HhhccCCC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC-ChhHHHHHHh
Q 042863 139 LVTTRSNKVA-SVMGTRGG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG-IPLAVRTLGS 212 (680)
Q Consensus 139 iiTsR~~~~~-~~~~~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~l~~~~~ 212 (680)
|.||..+... ......++ ...+.++..+.++..++++........... .....++..+.| ++.-+..++.
T Consensus 154 I~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~----~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 154 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD----IDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp EEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc----ccHHHHHHHcCCCCHHHHHHHHH
Confidence 6676655311 11111111 135778888888888888877644322211 113567788888 7876665543
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.31 E-value=4.4e-06 Score=87.99 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=105.2
Q ss_pred CCCchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
++|.+.+++++.+.+..... -+...++.|.|+|++|+|||++|+.+++ .... ..+.+++.. +
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~---~fv~vn~~~------l 274 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGA---FFFLINGPE------I 274 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSS---EEEEEEHHH------H
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCC---CEEEEEchH------h
Confidence 47888999999888764200 0013456799999999999999999987 3322 234444321 1
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC--------C---hhHHHHHHHhcCC--CCCCCEEEE
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE--------D---PKVWDKLKSLLSG--GAKGSKILV 140 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~--------~---~~~~~~l~~~l~~--~~~~~~iii 140 (680)
... ............+.....+.+.+|++|+++.. . ......+...+.. ...+.+||.
T Consensus 275 ----~~~-----~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIa 345 (489)
T 3hu3_A 275 ----MSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (489)
T ss_dssp ----HTS-----CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred ----hhh-----hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEE
Confidence 000 01111222334444444567789999998321 1 1122334334332 233555666
Q ss_pred ecCchH-HHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC-hhHHHHHHh
Q 042863 141 TTRSNK-VASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI-PLAVRTLGS 212 (680)
Q Consensus 141 TsR~~~-~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~~~ 212 (680)
||.... +........+. ..+.++..+.++..++++............. ...+++.+.|. +..+..++.
T Consensus 346 aTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHHHH
T ss_pred ecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHHHH
Confidence 666552 22222221122 3588999999999999998875443332222 35677777764 655655543
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.31 E-value=3.2e-06 Score=84.40 Aligned_cols=135 Identities=19% Similarity=0.340 Sum_probs=77.1
Q ss_pred CCCchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS---GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|++..++.+...+..... ........+.++|++|+|||++|+.++. .....-...+.++++....... ...+
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~~-~~~l 95 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHA-VSRL 95 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTTH-HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccccccccc-HHHh
Confidence 57999999999888876320 1112235899999999999999999988 3322222356677654332221 1111
Q ss_pred HHHhcCCCC-CCcC-HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecCc
Q 042863 78 IKSITGQNQ-GDLD-IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~~~-~~~~-~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR~ 144 (680)
++.... .... ...+...+.. ....++++|+++.........+...+.... +.+.+|.||..
T Consensus 96 ---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 96 ---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp ---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred ---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 221110 0000 0122222222 345799999998877776666666654321 23446777765
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.30 E-value=2.5e-06 Score=97.25 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-------CCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-------FELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 73 (680)
++||+++++++.+.+.. .....+.++|++|+|||++|+.+++ ..... -..++++++......
T Consensus 172 viGr~~~i~~l~~~l~~------~~~~~vlL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l~~g--- 240 (854)
T 1qvr_A 172 VIGRDEEIRRVIQILLR------RTKNNPVLIGEPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSLLAG--- 240 (854)
T ss_dssp CCSCHHHHHHHHHHHHC------SSCCCCEEEECTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC---------
T ss_pred cCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHhhcc---
Confidence 68999999999999966 2234588999999999999999998 33221 122444444221100
Q ss_pred HHHHHHHhcCCCCCCcCHHH-HHHHHHHHhC-CceEEEEEecCCCCC--------hhHHHHHHHhcCCCCCCCEEEEecC
Q 042863 74 MTKIIKSITGQNQGDLDIEQ-LQRILRVCLN-GKRYLLVMDDVWNED--------PKVWDKLKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~-~~~~llvlD~~~~~~--------~~~~~~l~~~l~~~~~~~~iiiTsR 143 (680)
.....+.+. +...+.+... +.+.+|++|+++... ......+...+.. ....+|.+|.
T Consensus 241 -----------~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 241 -----------AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred -----------CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 000112222 2233333333 367899999996532 1111223333433 2344565555
Q ss_pred chHHHH---hhccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 144 SNKVAS---VMGTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 144 ~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
...... ......+...+.+++++.++..++++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 443211 11111234568999999999999997654
No 204
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.29 E-value=8.5e-06 Score=81.95 Aligned_cols=178 Identities=20% Similarity=0.224 Sum_probs=99.4
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|++..++.+...+.... ..+..+..++++|++|+||||||+.++. .....+ ...+..-....
T Consensus 27 ~~g~~~~~~~l~~~i~~~~-~~~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~---~~~sg~~~~~~---------- 90 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAK-MRGEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNI---HVTSGPVLVKQ---------- 90 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHH-HHTCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCE---EEEETTTCCSH----------
T ss_pred ccCcHHHHHHHHHHHHHHH-hcCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEechHhcCH----------
Confidence 5788888888887775410 0112346799999999999999999998 332211 11221111111
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC------------------CCCEEE-Ee
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA------------------KGSKIL-VT 141 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~------------------~~~~ii-iT 141 (680)
..+...+. .+ .++.++++|+++.......+.+...+.... ....++ .|
T Consensus 91 -----------~~l~~~~~-~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 91 -----------GDMAAILT-SL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp -----------HHHHHHHH-HC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred -----------HHHHHHHH-Hc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 11111111 11 234577889887655433344433222110 112233 34
Q ss_pred cCchHHHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHHh
Q 042863 142 TRSNKVASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLGS 212 (680)
Q Consensus 142 sR~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~~ 212 (680)
++...+...... +. ....+++.+.++..+++++.+....... .++.+..|++.+.|.|..+..+..
T Consensus 158 ~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 158 TRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp SCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred CCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHHHHH
Confidence 443322222221 22 2468999999999999998875433322 236688999999999986554443
No 205
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.29 E-value=2.2e-06 Score=90.39 Aligned_cols=148 Identities=15% Similarity=0.217 Sum_probs=80.7
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcC-------CcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHF-------ELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 73 (680)
++||+++++++.+.+.+. ....+.++|++|+|||++|+.+++ ...... ..++.+++..
T Consensus 182 iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~------- 246 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMGT------- 246 (468)
T ss_dssp CCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC-----------
T ss_pred ccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCCc-------
Confidence 589999999999999762 234678999999999999999988 432211 1122333320
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhc-
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMG- 152 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~- 152 (680)
.. ...... .+...+...-...+.++++|.- ......+...+. ....++|.+|..........
T Consensus 247 ------~~--~g~~e~---~~~~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 247 ------KY--RGEFED---RLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CT---THHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------cc--cchHHH---HHHHHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 00 000011 1222333333456789999911 111122322222 22456666655443111100
Q ss_pred ---cCCCCCceeCCCCChhhHHHHHHHHhcc
Q 042863 153 ---TRGGTTGYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 153 ---~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
...+...+.+++.+.++..++++.....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 0012346899999999999999976644
No 206
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.28 E-value=3.6e-06 Score=81.80 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=85.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
|+|++..++++.+.+.... .....+.|+|++|+|||++|+.+++. ....-...+.++++... . ..+.. .
T Consensus 8 ~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~--~~~~~~~~~~v~~~~~~-~-~~~~~---~ 76 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-E-NLLDS---E 76 (265)
T ss_dssp --CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT--STTTTSCEEEEEGGGSC-H-HHHHH---H
T ss_pred ceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh--cCccCCCeEEEecCCCC-h-hHHHH---H
Confidence 5799999999888776533 12356889999999999999999873 22221235566666532 1 22111 1
Q ss_pred hcCCCCCCcC--HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCchHH
Q 042863 81 ITGQNQGDLD--IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~~--~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~~ 147 (680)
+......... .......+.. ...-+|++|+++.........+...+... ..+.++|.||.....
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~ 153 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (265)
T ss_dssp HHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHH
T ss_pred hcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHH
Confidence 2111100000 0000001111 23458999999887766656665555421 235678887765311
Q ss_pred HH--------hhccCCCCCceeCCCCCh--hhHHHHHH
Q 042863 148 AS--------VMGTRGGTTGYNLQGLPL--EDCLSLFM 175 (680)
Q Consensus 148 ~~--------~~~~~~~~~~~~l~~l~~--~~~~~l~~ 175 (680)
.. ....+-....+.++++++ ++...++.
T Consensus 154 ~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 154 AMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHH
T ss_pred HHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHH
Confidence 10 000000113578999987 45555443
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.5e-05 Score=80.40 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|-+++.++|.+.+.-+. .-+-..++-|.+|||+|.|||.||+.++. ..... .+.++.+.-.+
T Consensus 151 gGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~---f~~v~~s~l~s----- 220 (405)
T 4b4t_J 151 GGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCK---FIRVSGAELVQ----- 220 (405)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCE---EEEEEGGGGSC-----
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCC---ceEEEhHHhhc-----
Confidence 466777777776654210 00123457799999999999999999998 43333 23444332110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-----------hh---HHHHHHHhcCCC--CCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-----------PK---VWDKLKSLLSGG--AKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-----------~~---~~~~l~~~l~~~--~~~~~i 138 (680)
.....+...+...+...-+..+++|++|+++... .. ....+...+... ..+..|
T Consensus 221 ----------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 221 ----------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp ----------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred ----------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 0001111122222333334678999999985411 01 122333334332 235556
Q ss_pred EEecCchHHHHh-hccCCC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 139 LVTTRSNKVASV-MGTRGG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 139 iiTsR~~~~~~~-~~~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
|.||..+..... +...++ ...+.++.-+.++..++|+....+......-+ ...|++.+.|.
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 667765532211 111112 25688999999999999988775543332222 35777888764
No 208
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=8.4e-06 Score=84.35 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=87.2
Q ss_pred hhccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCccccccCcccccccCcc
Q 042863 402 CISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEECLELEELPKDIRYLVSL 480 (680)
Q Consensus 402 ~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 480 (680)
+|.+|.+|+.+.+.++. ..+. ..+.+|.+|+.+.+..+ ........+..+..|+.+.+..+. ..+........+|
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCC
Confidence 45555556655554432 2222 23455555665555443 111222234455555555544321 1122222233445
Q ss_pred cEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCC
Q 042863 481 RVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECE 560 (680)
Q Consensus 481 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (680)
+.+.+...........+..+..|+.+.+..+. ..--...+..+..++.+....+.. ....+..|++|+.+.+..+
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred ceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence 55554332211112334445555555554321 111112333444444444332211 1122444555555555332
Q ss_pred CccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCC----cCCCCC
Q 042863 561 SLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLP----EDMLHL 636 (680)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~----~~~~~L 636 (680)
+. ..-...+..|.+|+.+++.. .++.++.. ++.+|.+|+.+.+..+ ++.+. .+|.+|
T Consensus 308 -i~----------~I~~~aF~~c~~L~~i~lp~--~v~~I~~~----aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 308 -VK----------FIGEEAFESCTSLVSIDLPY--LVEEIGKR----SFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp -CC----------EECTTTTTTCTTCCEECCCT--TCCEECTT----TTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred -cc----------eechhhhcCCCCCCEEEeCC--cccEEhHH----hccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 11 00012233445555555543 23444432 3345556665555443 33333 244555
Q ss_pred CeEEEc
Q 042863 637 KTLRIR 642 (680)
Q Consensus 637 ~~l~l~ 642 (680)
+++.+.
T Consensus 369 ~~i~lp 374 (394)
T 4fs7_A 369 KKVELP 374 (394)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 555553
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.20 E-value=7.7e-06 Score=81.58 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=83.5
Q ss_pred CCCchhHHHHHHHHHhcCC--CC------CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC---
Q 042863 1 IIGRDKDREKIIEALMQTS--SG------ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG--- 69 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~--~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--- 69 (680)
++|++++++.+...+.... .. .+.....+.++|++|+|||++|+.+++ .... ..+.+++.....
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~---~~~~i~~~~~~~~~~ 91 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANA---PFIKVEATKFTEVGY 91 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGSSCCS
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEcchhcccCCc
Confidence 5899999999988875410 00 012345789999999999999999987 3322 244555543221
Q ss_pred ----HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhH------------HHHHHHhcCCC-
Q 042863 70 ----ERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKV------------WDKLKSLLSGG- 132 (680)
Q Consensus 70 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~------------~~~l~~~l~~~- 132 (680)
....+..+.... . . .+.. ...+.+|++|+++...... ...+...+...
T Consensus 92 ~~~~~~~~~~~~~~~~----~--~-------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~ 156 (310)
T 1ofh_A 92 VGKEVDSIIRDLTDSA----G--G-------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGST 156 (310)
T ss_dssp GGGSTTHHHHHHHHTT----T--T-------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCE
T ss_pred cCccHHHHHHHHHHHh----h--H-------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCe
Confidence 111122221111 0 0 0011 1235799999996643221 33444444332
Q ss_pred ---------CCCCEEEEec----Cch-HHHHhhccCCCC-CceeCCCCChhhHHHHHHH
Q 042863 133 ---------AKGSKILVTT----RSN-KVASVMGTRGGT-TGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 133 ---------~~~~~iiiTs----R~~-~~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~ 176 (680)
..+..+|.|+ ..+ .+...... +. ..+.+++++.++..++++.
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 157 VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred EecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 1245556553 222 11111111 12 3589999999999998874
No 210
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.20 E-value=3.9e-06 Score=76.21 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG 83 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (680)
+.+.++.+.+++.... ....+.++|+|++|+||||||+.++........+ .+++++. .+....+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~~------~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFDT------KDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEEH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEEH------HHHHHHHHHHhcC
Confidence 3455556666665432 1234689999999999999999999842212222 3445543 2333333333321
Q ss_pred CCCCCcCHHHHHHHHHHHhCCceEEEEEecCCC--CChhHHHHHHHhcCCC-CCCCEEEEecCch
Q 042863 84 QNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWN--EDPKVWDKLKSLLSGG-AKGSKILVTTRSN 145 (680)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~--~~~~~~~~l~~~l~~~-~~~~~iiiTsR~~ 145 (680)
.... .....+ .+.-++|+||++. .+......+...+... ..+..+|+||...
T Consensus 89 ~~~~-----~~~~~~-----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT-----KFLKTV-----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS-----HHHHHH-----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH-----HHHHHh-----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 111111 1456899999973 3443434444444332 2356788888643
No 211
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.17 E-value=3.1e-05 Score=81.40 Aligned_cols=99 Identities=9% Similarity=-0.046 Sum_probs=64.9
Q ss_pred EEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEec---------Cc----h-HHHHhhccCCCCCceeCCCCChhhHHH
Q 042863 107 YLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTT---------RS----N-KVASVMGTRGGTTGYNLQGLPLEDCLS 172 (680)
Q Consensus 107 ~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTs---------R~----~-~~~~~~~~~~~~~~~~l~~l~~~~~~~ 172 (680)
-++++|+++..+....+.+...+...... .+|+.| .+ + .+.... ..+...+.+++++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i--~sR~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDL--LDRVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHH--HTTEEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhH--HhhcceeeCCCCCHHHHHH
Confidence 49999999988888888888777766555 344344 11 1 111111 1233568999999999999
Q ss_pred HHHHHhcccCCCCCchHHHHHHHHHHhh-CCChhHHHHHH
Q 042863 173 LFMKCAFKEERDKHPNLVKIGEEIVKKC-GGIPLAVRTLG 211 (680)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Pl~l~~~~ 211 (680)
+++.++.......+ ++.+..|++.+ +|.|.....+.
T Consensus 374 iL~~~~~~~~~~~~---~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 374 IIKIRAQTEGINIS---EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHHHTCCBC---HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHHHhCCCCC---HHHHHHHHHHccCCCHHHHHHHH
Confidence 99988754433333 25567888888 78887554443
No 212
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.17 E-value=2.9e-05 Score=80.27 Aligned_cols=218 Identities=8% Similarity=0.029 Sum_probs=116.2
Q ss_pred HhhhcCCccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCCccccc-ccccCcCCcceeccccccCCCccChhhcCC
Q 042863 375 FLSDLGRVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSAIEALP-KEIGNLKHMRYLDLSRNYKIKKLPNAICEL 453 (680)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 453 (680)
.|.+|++|+.+.+..+.. .+...++.+|.+|+.+.+..+ ++.+. ..+.++..|+.+.+..+ ...+......+
T Consensus 157 aF~~c~~L~~i~l~~~~~----~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~ 229 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME----TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSK 229 (394)
T ss_dssp TTTTCTTCCEEECCTTCC----EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT
T ss_pred hhcccCCCcEEecCCccc----eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhccc
Confidence 466777777777654321 122345667777777776654 33332 34566777777666544 22223333345
Q ss_pred CCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccchhhccCCcccceeecc
Q 042863 454 QSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYLFDDIDQLRVLRSLLIA 533 (680)
Q Consensus 454 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 533 (680)
..|+.+.+... ....-...+..+.+|+.+.+..+........+..+..++.+.+.... .....+..+.+|+.+.+.
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEEC
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccc
Confidence 56666666542 11112234456666777777655443334455566666666554321 112344556677777665
Q ss_pred cccCcccC-CccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCcccchhhhhhhcccC
Q 042863 534 GCPCLISL-PPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNF 612 (680)
Q Consensus 534 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 612 (680)
.+ +..+ ...+.+|++|+++++... ++ ..-...+.+|.+|+.+.+..+ ++.++. .++.+|
T Consensus 306 ~~--i~~I~~~aF~~c~~L~~i~lp~~--v~----------~I~~~aF~~c~~L~~i~lp~~--l~~I~~----~aF~~C 365 (394)
T 4fs7_A 306 DS--VKFIGEEAFESCTSLVSIDLPYL--VE----------EIGKRSFRGCTSLSNINFPLS--LRKIGA----NAFQGC 365 (394)
T ss_dssp TT--CCEECTTTTTTCTTCCEECCCTT--CC----------EECTTTTTTCTTCCEECCCTT--CCEECT----TTBTTC
T ss_pred cc--cceechhhhcCCCCCCEEEeCCc--cc----------EEhHHhccCCCCCCEEEECcc--ccEehH----HHhhCC
Confidence 43 2222 234667777777766432 11 001223455667777777543 455554 244577
Q ss_pred CccceeeeccC
Q 042863 613 QALEGLVIGNC 623 (680)
Q Consensus 613 ~~L~~L~l~~~ 623 (680)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 77777777543
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=3e-05 Score=79.48 Aligned_cols=178 Identities=16% Similarity=0.102 Sum_probs=97.9
Q ss_pred CCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|-++++++|.+.+.-+. ..+-..++-|.+|||+|.|||.+|+.++. ..... .+.++.+.-.+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~---~~~v~~s~l~s----- 253 (437)
T 4b4t_L 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN---FIFSPASGIVD----- 253 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGGGTCC-----
T ss_pred CChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehhhhcc-----
Confidence 466777777776664211 01124467899999999999999999998 43332 33444332110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------Chh---HHHHHHHhcCCC--CCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPK---VWDKLKSLLSGG--AKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~---~~~~l~~~l~~~--~~~~~i 138 (680)
.....+...+...+...-...+++|++|+++.. +.. .+..+...+... ..+..|
T Consensus 254 ----------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 254 ----------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp ----------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred ----------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE
Confidence 000111112222233333467899999998531 111 122333334332 235667
Q ss_pred EEecCchHHHHhhccCC-C-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 139 LVTTRSNKVASVMGTRG-G-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~~-~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
|.||..+......-.++ + ...+.++.-+.++..++|+....+......-+ ...+++.+.|.
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSC
T ss_pred EEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCC
Confidence 77777654322221111 1 13578888888999999988775543322222 35777888764
No 214
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.13 E-value=4.6e-05 Score=79.49 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=99.2
Q ss_pred CCCchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.++.++++.+.+..... -+...++-+.++|++|+|||+||+.++. +.... .+.++++.-...
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~---f~~is~~~~~~~---- 88 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVP---FFHISGSDFVEL---- 88 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCC---EEEEEGGGTTTC----
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCC---eeeCCHHHHHHH----
Confidence 46778877777766543210 0112345699999999999999999987 33222 334443321110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh--------------hHHHHHHHhcCC--CCCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP--------------KVWDKLKSLLSG--GAKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~--------------~~~~~l~~~l~~--~~~~~~i 138 (680)
........+...+.+.....+.+|++|+++.... .....+...+.. ...+..|
T Consensus 89 -----------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV 157 (476)
T 2ce7_A 89 -----------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157 (476)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE
T ss_pred -----------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 0001122233444444456789999999954211 112333333322 1235667
Q ss_pred EEecCchHHHHh-hccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 139 LVTTRSNKVASV-MGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 139 iiTsR~~~~~~~-~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
|.||..+..... ....++. ..+.++..+.++..++++............. ...+++.+.|+.
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 777766543221 1111122 2578888888888888887765433222111 356888888877
No 215
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=8.6e-05 Score=76.69 Aligned_cols=263 Identities=9% Similarity=0.099 Sum_probs=135.4
Q ss_pred HhhhcC-CccEEEEecCCcccchHHHHHhhccCcceeEEEeCCCC---ccccc-ccccCcCCcceeccccccCCCccChh
Q 042863 375 FLSDLG-RVRTIFFSINDEKVSQSFVRSCISKSQFLRVLNLSGSA---IEALP-KEIGNLKHMRYLDLSRNYKIKKLPNA 449 (680)
Q Consensus 375 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 449 (680)
.|.+|+ .|+++.+-.+ ...+-..+|.+|.+|+.+.+..+. ++.+. ..+.+|.+|+.+.+..+ ........
T Consensus 58 aF~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred hccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 456664 4777777543 122223467788888888876653 44443 34666777777776544 22222334
Q ss_pred hcCCCCCcEEecCCccccccCcccccccCcccEEEeccccccccccccCcccccceeecccccCcccc-hhhccCCcccc
Q 042863 450 ICELQSLQTLNLEECLELEELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLVSLRCLIISHCRNLEYL-FDDIDQLRVLR 528 (680)
Q Consensus 450 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~ 528 (680)
+..+.+|+.+.+..+ ....-...+..+.+|+.+.+..+ +..+........+|+.+.+.... ..+ ...+..+.++.
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~--~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKV--TRIGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTC--CEECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcc--cccccchhhhccccc
Confidence 566777777776542 12222233455666666666433 22221111122345555443211 000 11122222222
Q ss_pred eeeccccc-----------------------------------Cccc-CCccCCCCCCcCeEeecCCCCccccccccccC
Q 042863 529 SLLIAGCP-----------------------------------CLIS-LPPAMRYLSSLETLMFVECESLSLNLSMQLEG 572 (680)
Q Consensus 529 ~L~l~~~~-----------------------------------~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 572 (680)
........ .... -...+.+|++|+.+.+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~----------- 277 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV----------- 277 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-----------
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-----------
Confidence 22111100 0001 123466778888887754321
Q ss_pred CCCcCcccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc----CCCCCCeEEEcCCcccc
Q 042863 573 EGSHQASNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE----DMLHLKTLRIRGCPALS 648 (680)
Q Consensus 573 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~L~~l~l~~c~~l~ 648 (680)
..-...+..+++|+.+.+.. .++.++.. ++.+|.+|+.++|..+ ++.+.. +|.+|+.+.+... ++
T Consensus 278 -~I~~~aF~~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~ 346 (394)
T 4gt6_A 278 -SIGTGAFMNCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VT 346 (394)
T ss_dssp -EECTTTTTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CC
T ss_pred -eecCcccccccccccccCCC--cccccCce----eecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cC
Confidence 11123456788899998864 46677754 4568999999999764 555543 6778999888422 21
Q ss_pred cccCCCCCCCCccccccceeEecC
Q 042863 649 DRCKPLTGEDWHKIAHVAHIKLDD 672 (680)
Q Consensus 649 ~~~~~~~~~~~~~~~~l~~~~~~~ 672 (680)
. +....+..-.+|+.+++.+
T Consensus 347 ~----I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 347 K----IPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp B----CCGGGGTTCTTCCEEEESS
T ss_pred E----EhHhHhhCCCCCCEEEECC
Confidence 1 2222344444566666554
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.9e-05 Score=78.40 Aligned_cols=178 Identities=17% Similarity=0.130 Sum_probs=95.6
Q ss_pred CCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|-+++.++|.+.+.-+. .-+-..++-|.+|||+|.|||.||+.++. ..... .+.++.+.-.+
T Consensus 212 gGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~---fi~vs~s~L~s----- 281 (467)
T 4b4t_H 212 GGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDAT---FIRVIGSELVQ----- 281 (467)
T ss_dssp TTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCE---EEEEEGGGGCC-----
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCC---eEEEEhHHhhc-----
Confidence 466777777776543100 00124578899999999999999999998 43333 23444332110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-------h----h---HHHHHHHhcCCC--CCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-------P----K---VWDKLKSLLSGG--AKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-------~----~---~~~~l~~~l~~~--~~~~~i 138 (680)
.....+...+...+...-...+++|++|+++... . . ....+...+... ..+..|
T Consensus 282 ----------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 282 ----------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp ----------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred ----------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 0001111122223333334678999999985310 0 0 112222333322 234556
Q ss_pred EEecCchHHHH-hhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 139 LVTTRSNKVAS-VMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 139 iiTsR~~~~~~-~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
|.||..+.... .+...++. ..+.++.-+.++..++|+...........-. ...|++.+.|.
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 66776543211 11111122 4688888899999999988775543332222 35677788764
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.10 E-value=5.4e-05 Score=85.36 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=87.0
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc------CCcEEE-EEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH------FELKIW-ICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~ 73 (680)
++||+++++++.+.+.. .....+.++|++|+|||++|+.+++. .... ....+| ++....
T Consensus 188 ~iGr~~~i~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 188 LIGREKELERAIQVLCR------RRKNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEECCCC--------
T ss_pred ccCCHHHHHHHHHHHhc------cCCCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEEcHHHH------
Confidence 58999999999999965 23456889999999999999999873 3211 122222 221110
Q ss_pred HHHHHHHhcCCCCCCcCHHH-HHHHHHHHhCCceEEEEEecCCCC------ChhHHHH---HHHhcCCCCCCCEEEEecC
Q 042863 74 MTKIIKSITGQNQGDLDIEQ-LQRILRVCLNGKRYLLVMDDVWNE------DPKVWDK---LKSLLSGGAKGSKILVTTR 143 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~llvlD~~~~~------~~~~~~~---l~~~l~~~~~~~~iiiTsR 143 (680)
..........+. +...+.......+.+|++|+++.. .....+. +...+. ....++|.+|.
T Consensus 254 --------~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 254 --------LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp ---------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred --------hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 000111222332 233333333445789999999754 1112222 222222 23456666666
Q ss_pred chHHHHhhcc----CCCCCceeCCCCChhhHHHHHHHHh
Q 042863 144 SNKVASVMGT----RGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 144 ~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
.......... ..+...+.+++.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 5443211110 0122358899999999999998765
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.5e-05 Score=78.87 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=92.0
Q ss_pred CCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|-+++.++|.+.+.-+. .-+-..++-+.+|||+|.|||.+|+.++. ..... .+.++.+.-.+
T Consensus 175 gGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~---~~~v~~~~l~~----- 244 (428)
T 4b4t_K 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAA---FIRVNGSEFVH----- 244 (428)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCE---EEEEEGGGTCC-----
T ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---eEEEecchhhc-----
Confidence 466777777777664211 00224467899999999999999999998 43332 33444332110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCC-----------CChh---HHHHHHHhcCC--CCCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWN-----------EDPK---VWDKLKSLLSG--GAKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~-----------~~~~---~~~~l~~~l~~--~~~~~~i 138 (680)
.....+...+...+...-...++++++|+++. .+.. ....+...+.. ...+..|
T Consensus 245 ----------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v 314 (428)
T 4b4t_K 245 ----------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV 314 (428)
T ss_dssp ----------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE
T ss_pred ----------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 00111112222233333346789999999832 1111 12233333332 2235566
Q ss_pred EEecCchHHHH-hhccCCCC-CceeCCCC-ChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 139 LVTTRSNKVAS-VMGTRGGT-TGYNLQGL-PLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 139 iiTsR~~~~~~-~~~~~~~~-~~~~l~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
|.||..+.... .....++. ..+.++.+ +.++..++|+....+......-+ ...+++.+.|.
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 77776553211 11111121 35778766 45566677776664433222222 35677777664
No 219
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.08 E-value=1.9e-06 Score=78.61 Aligned_cols=90 Identities=12% Similarity=0.210 Sum_probs=46.5
Q ss_pred hHHHhhhcCCccEEEEecC-Cccc-chHHHHHhhccCcceeEEEeCCCCccc-----ccccccCcCCcceeccccccCCC
Q 042863 372 FSRFLSDLGRVRTIFFSIN-DEKV-SQSFVRSCISKSQFLRVLNLSGSAIEA-----LPKEIGNLKHMRYLDLSRNYKIK 444 (680)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~ 444 (680)
+...+..++.|++|++++| .... ....+...+...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3455556666677766665 4321 122334445556666666666666652 22334444556666666664332
Q ss_pred c----cChhhcCCCCCcEEec
Q 042863 445 K----LPNAICELQSLQTLNL 461 (680)
Q Consensus 445 ~----~~~~~~~l~~L~~L~l 461 (680)
. +...+...+.|++|+|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEe
Confidence 1 2333444455555555
No 220
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.3e-05 Score=80.26 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|-+++.++|.+.+.-+. ..+-..++-|.+|||+|.|||.+|+.++. ..... .+.++.+.-.+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~---f~~v~~s~l~~----- 253 (434)
T 4b4t_M 184 GGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNAT---FLKLAAPQLVQ----- 253 (434)
T ss_dssp CSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGGGGCS-----
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCC---EEEEehhhhhh-----
Confidence 466777777776543211 01224467899999999999999999998 43332 33344322100
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCC-------C----Chh---HHHHHHHhcCCCC--CCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWN-------E----DPK---VWDKLKSLLSGGA--KGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~-------~----~~~---~~~~l~~~l~~~~--~~~~i 138 (680)
.....+...+...+...-...+++|++|+++. . +.. ....+...+.... .+..|
T Consensus 254 ----------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV 323 (434)
T 4b4t_M 254 ----------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV 323 (434)
T ss_dssp ----------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE
T ss_pred ----------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEE
Confidence 00001111111222222234679999999832 0 001 1123444444432 35556
Q ss_pred EEecCchHHHHhhccC-CCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC-hhHHHHH
Q 042863 139 LVTTRSNKVASVMGTR-GGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI-PLAVRTL 210 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~-~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~l~~~ 210 (680)
|.||..+......-.+ ++. ..+.++.-+.++..++|+....+......-. ...|++.+.|. +.-|..+
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCCHHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCHHHHHHH
Confidence 6677765432221111 111 3578888899999999987765443322222 35777888763 3334443
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.4e-05 Score=78.03 Aligned_cols=178 Identities=17% Similarity=0.116 Sum_probs=95.2
Q ss_pred CCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
-|-+++.++|.+.+.-+. ..+-..++-|.+|||+|.|||.||+.++. ..... .+.++.+.-.
T Consensus 185 gGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~---fi~v~~s~l~------ 253 (437)
T 4b4t_I 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSAT---FLRIVGSELI------ 253 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCE---EEEEESGGGC------
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCC---EEEEEHHHhh------
Confidence 356777777776654211 01124467899999999999999999998 43333 2233322110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------Chh---HHHHHHHhcCC--CCCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPK---VWDKLKSLLSG--GAKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~---~~~~l~~~l~~--~~~~~~i 138 (680)
. .....+...+...+...-+..+++|++|+++.. +.. ....+...+.. ...+..|
T Consensus 254 --------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 254 --------Q-KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp --------C-SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred --------h-ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEE
Confidence 0 000111111222223333467899999998431 111 12223333322 2235556
Q ss_pred EEecCchHHHHhhccC-CCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCC
Q 042863 139 LVTTRSNKVASVMGTR-GGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGI 203 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~-~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 203 (680)
|.||..+......-.+ ++. ..+.++.-+.++..++|+....+......-+ ...|++.+.|.
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 7777665433222221 111 3478888888999999988775543332222 35677777664
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.05 E-value=1.8e-05 Score=89.18 Aligned_cols=148 Identities=15% Similarity=0.212 Sum_probs=81.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-------CCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-------FELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 73 (680)
++||+++++++.+.+.. .....+.++|++|+|||++|+.+++ ..... -..++.+++ ...
T Consensus 182 iiG~~~~i~~l~~~l~~------~~~~~vLL~G~pGtGKT~la~~la~--~l~~~~~p~~l~~~~~~~~~~--g~~---- 247 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDM--GTK---- 247 (758)
T ss_dssp CCCCHHHHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC-----------
T ss_pred ccCchHHHHHHHHHHhC------CCCCCeEEECCCCCCHHHHHHHHHH--HHhcCCCChhhcCCeEEEecc--ccc----
Confidence 58999999999999976 2234689999999999999999988 33111 011222222 000
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHHhhcc
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVASVMGT 153 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~~~~~ 153 (680)
. .+.... .+...+.+.....+.+|++|.- . .....+...+. ....++|.+|...........
T Consensus 248 ---~------~G~~e~---~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 248 ---Y------RGEFED---RLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CT---THHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ---c------cchHHH---HHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0 000111 1223333334467789999921 1 11122322222 234666766654432111100
Q ss_pred ----CCCCCceeCCCCChhhHHHHHHHHhcc
Q 042863 154 ----RGGTTGYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 154 ----~~~~~~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
..+...+.+++.+.++..++++.....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 012256899999999999999976543
No 223
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=2e-06 Score=78.45 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=75.3
Q ss_pred chHHHHHhhccCcceeEEEeCCC-Cccc-----ccccccCcCCcceeccccccCCCc----cChhhcCCCCCcEEecCCc
Q 042863 395 SQSFVRSCISKSQFLRVLNLSGS-AIEA-----LPKEIGNLKHMRYLDLSRNYKIKK----LPNAICELQSLQTLNLEEC 464 (680)
Q Consensus 395 ~~~~~~~~~~~~~~L~~L~L~~~-~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~ 464 (680)
....+...+..++.|++|+|++| .+.. +...+...++|++|+|++|.+... +...+...+.|++|+|++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34556677888999999999999 8862 345566778899999998864432 3334455677888888887
Q ss_pred ccccc----CcccccccCcccEEEe--cccccccc-----ccccCcccccceeeccccc
Q 042863 465 LELEE----LPKDIRYLVSLRVFEV--TTKQKSLQ-----DSGIGCLVSLRCLIISHCR 512 (680)
Q Consensus 465 ~~~~~----~~~~~~~l~~L~~L~l--~~~~~~~~-----~~~l~~l~~L~~L~l~~~~ 512 (680)
.+... +...+...++|++|++ +.|.+... ...+...++|+.|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 65432 3444555666777777 55665532 1223334455555555543
No 224
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=3.7e-06 Score=74.52 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=19.8
Q ss_pred cccEEEecccccccc-ccccCcccccceeecccccCcc
Q 042863 479 SLRVFEVTTKQKSLQ-DSGIGCLVSLRCLIISHCRNLE 515 (680)
Q Consensus 479 ~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 515 (680)
+|+.|++++|.++.. ...+.++++|+.|++++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 355555555554433 2334556666666666665554
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.99 E-value=1.3e-05 Score=90.23 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=92.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCC--C-CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGE--S-ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~--~-~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.+..++.+.+.+.....+. + .....+.++|++|+|||++|+.+++ .....-...+.++++........
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~~~~---- 566 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEKHST---- 566 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSSCCC----
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhccccccc----
Confidence 4789999999888887533111 1 1223799999999999999999998 33232334667776543211100
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCC-----------CCCCCEEEEecCch-
Q 042863 78 IKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSG-----------GAKGSKILVTTRSN- 145 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~-----------~~~~~~iiiTsR~~- 145 (680)
....+...+.+ ....+|+||++....+.....+...+.. ....++||+||...
T Consensus 567 ------------~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 567 ------------SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp ------------C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ------------ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 01111111211 3345999999988877777766666553 12356788888731
Q ss_pred ----HHH----Hhhc--cCCCC-CceeCCCCChhhHHHHHHHHh
Q 042863 146 ----KVA----SVMG--TRGGT-TGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 146 ----~~~----~~~~--~~~~~-~~~~l~~l~~~~~~~l~~~~~ 178 (680)
... .... ...+. ..+.++++++++..+++....
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 110 0000 00122 468899999998888887655
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.93 E-value=2.7e-06 Score=82.92 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=91.4
Q ss_pred CCCchhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG------ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.++..+.+.+.+...... +...++.+.++|++|+|||++|+.++. .....| +.+++.....
T Consensus 13 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~v~~~~~~~----- 82 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAHVPF---FSMGGSSFIE----- 82 (268)
T ss_dssp SSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH--HHTCCC---CCCCSCTTTT-----
T ss_pred hCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEechHHHHH-----
Confidence 578888888888776521000 011234588999999999999999987 333222 1222221100
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChh---------------HHHHHHHhcCCC---CCCC
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPK---------------VWDKLKSLLSGG---AKGS 136 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~---------------~~~~l~~~l~~~---~~~~ 136 (680)
....... ... ...+.......+.+|++|+++..... ....+...+... ....
T Consensus 83 -----~~~~~~~--~~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 152 (268)
T 2r62_A 83 -----MFVGLGA--SRV---RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPV 152 (268)
T ss_dssp -----SCSSSCS--SSS---STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCC
T ss_pred -----hhcchHH--HHH---HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCE
Confidence 0000000 001 11122222245689999999543211 011122222221 2235
Q ss_pred EEEEecCchHHHH-hhccCCC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCChh
Q 042863 137 KILVTTRSNKVAS-VMGTRGG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIPL 205 (680)
Q Consensus 137 ~iiiTsR~~~~~~-~~~~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 205 (680)
.||.||..+.... ......+ ...+.++..+.++..++++............. ...+++.+.|.|-
T Consensus 153 ~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 153 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp EEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred EEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 5677776553211 1111111 14578889999999999988774432221111 2456677777654
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=8.9e-06 Score=75.38 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS 65 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 65 (680)
+.++.+.+++.... ....++.+.|+|++|+|||+||+.+++ ........++|+++.
T Consensus 36 ~~~~~~~~~~~~~~--~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 36 KAIRFAERFVAEYE--PGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHCC--SSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH
T ss_pred HHHHHHHHHHHHhh--hccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH
Confidence 34556666665422 111236899999999999999999988 443434456677653
No 228
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.88 E-value=0.00012 Score=73.65 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=86.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|+++.++.+...+... ..+.++|++|+|||++|+.+++ ..... ...+.+........+....
T Consensus 29 i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l~g~~--- 92 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDLIGTM--- 92 (331)
T ss_dssp CCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHHHEEE---
T ss_pred eeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhcCCce---
Confidence 589999999998888652 2699999999999999999987 33222 3344444333333211100
Q ss_pred hcCCCCCCcCHHHHHHHHHHHhCC--ceEEEEEecCCCCChhHHHHHHHhcCC-----------CCCCCEEEEecCchH-
Q 042863 81 ITGQNQGDLDIEQLQRILRVCLNG--KRYLLVMDDVWNEDPKVWDKLKSLLSG-----------GAKGSKILVTTRSNK- 146 (680)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~l~~--~~~llvlD~~~~~~~~~~~~l~~~l~~-----------~~~~~~iiiTsR~~~- 146 (680)
.......... ...+ ...++++|+++.........+...+.. .+....++.|+....
T Consensus 93 ~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 93 IYNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp EEETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred eecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 0000000000 0000 125899999988777666655554432 133455555554221
Q ss_pred -----HHHhhccCCCCC-ceeCCCCChhhHHHHHHHHhcc
Q 042863 147 -----VASVMGTRGGTT-GYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 147 -----~~~~~~~~~~~~-~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
+..... .+.. .+.+++.+.++..++++.....
T Consensus 163 ~~~~~l~~~l~--~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 163 EGTYPLPEAQV--DRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCCCCCCHHHH--TTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCcccCCHHHH--hheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 111111 1223 4789999999999999887744
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.86 E-value=6e-05 Score=83.26 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=101.0
Q ss_pred CCchhHHHHHHHHHhc----C---CCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQ----T---SSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~----~---~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
.|-++++++|.+.+.- + ..-+-..++-|.+||++|+|||+||+.++. ..... .+.+++..
T Consensus 207 gGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~---~~~v~~~~-------- 273 (806)
T 3cf2_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE-------- 273 (806)
T ss_dssp CSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCE---EEEEEHHH--------
T ss_pred cCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCe---EEEEEhHH--------
Confidence 4566777777766532 1 111234578899999999999999999998 33322 33444321
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-----------hhHHHHHHHhcCCC--CCCCEEEEe
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-----------PKVWDKLKSLLSGG--AKGSKILVT 141 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-----------~~~~~~l~~~l~~~--~~~~~iiiT 141 (680)
+. . .........+...+.+..+..+.+|++|+++..- .....++...+... ..+..||.|
T Consensus 274 --l~----s-k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 274 --IM----S-KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp --HH----S-SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred --hh----c-ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 00 0 0111122233344444446678999999984411 11122333333322 224556666
Q ss_pred cCchHH-HHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh-hHHHHH
Q 042863 142 TRSNKV-ASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP-LAVRTL 210 (680)
Q Consensus 142 sR~~~~-~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~~ 210 (680)
|..+.. ...+...++. +.++++..+.++..++++..........+.. ...|++.+.|.- .-+..+
T Consensus 347 TN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~GfsgaDL~~L 414 (806)
T 3cf2_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (806)
T ss_dssp CSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHHHHHHH
T ss_pred cCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHHHHHHH
Confidence 665532 2222221122 3588999999999999988764443322222 357778887653 334333
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.85 E-value=0.00014 Score=71.32 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...++.+.++|++|+|||+||+.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999998
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.84 E-value=8.6e-05 Score=84.58 Aligned_cols=134 Identities=20% Similarity=0.369 Sum_probs=76.1
Q ss_pred CCCchhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSG---ESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|++..++.+...+.....+ .+.....+.++|++|+|||++|+.+++. ....-...+.++++.......
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~----- 632 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA----- 632 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG-----
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH-----
Confidence 479999999998888753211 1122358999999999999999999873 322112355666554332110
Q ss_pred HHHhcCCCC--CCcC-HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCCC-----------CCCEEEEecC
Q 042863 78 IKSITGQNQ--GDLD-IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGA-----------KGSKILVTTR 143 (680)
Q Consensus 78 ~~~l~~~~~--~~~~-~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~-----------~~~~iiiTsR 143 (680)
...+....+ ...+ ...+...+.. ...-+|+||++..........+...+.... +++.||+||.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 011110000 0000 0112222222 334699999998888877777777776431 2444777776
Q ss_pred c
Q 042863 144 S 144 (680)
Q Consensus 144 ~ 144 (680)
.
T Consensus 710 ~ 710 (854)
T 1qvr_A 710 L 710 (854)
T ss_dssp T
T ss_pred c
Confidence 4
No 232
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=5e-06 Score=79.64 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=36.1
Q ss_pred ccCcceeEEEeCCCCccccc---ccccCcCCcceeccccccCCCccChhhcCCC--CCcEEecCCccccccCc
Q 042863 404 SKSQFLRVLNLSGSAIEALP---KEIGNLKHMRYLDLSRNYKIKKLPNAICELQ--SLQTLNLEECLELEELP 471 (680)
Q Consensus 404 ~~~~~L~~L~L~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~ 471 (680)
..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|.+|...+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45666777777776666432 3344566666666666643322 1122222 66666666665554443
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=1.4e-05 Score=69.63 Aligned_cols=86 Identities=19% Similarity=0.050 Sum_probs=52.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
..++|+|++|+|||+|++.++.... ..-..++|++....... .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhhHH------------------------------HHHhCC
Confidence 4799999999999999999998432 22123677765542211 011345
Q ss_pred EEEEEecCCCCChhHHHHHHHhcCCC-CCCC-EEEEecCc
Q 042863 107 YLLVMDDVWNEDPKVWDKLKSLLSGG-AKGS-KILVTTRS 144 (680)
Q Consensus 107 ~llvlD~~~~~~~~~~~~l~~~l~~~-~~~~-~iiiTsR~ 144 (680)
-++|+||+........+.+...+... ..+. ++|+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999775544444444444421 1233 47888874
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.72 E-value=6.3e-05 Score=84.86 Aligned_cols=133 Identities=20% Similarity=0.357 Sum_probs=73.9
Q ss_pred CCCchhHHHHHHHHHhcCCCCC---CCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGE---SETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKI 77 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (680)
++|.++.++.+...+.....+. ......+.++|++|+|||++|+.+++ ... ...+.++++.......
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~~----- 529 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT----- 529 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC-----
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchhh-----
Confidence 4788899988888776422111 12335799999999999999999987 332 2345566554322100
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHHh-CCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 78 IKSITGQNQGDLDIEQLQRILRVCL-NGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
...+......-...++ ...+.+.+ +....+|+||+++...+.....+...+... ...+.||+||..
T Consensus 530 ~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 0011111010000110 11112222 244679999999887777766666665532 134557777754
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.67 E-value=0.0005 Score=72.13 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=93.8
Q ss_pred CCCchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.++..+++.+....... -+..-++-++|+|++|+|||+||+.++.. .. ...+.++...-...
T Consensus 33 v~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~~---- 103 (499)
T 2dhr_A 33 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVEM---- 103 (499)
T ss_dssp SCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTSS----
T ss_pred cCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHHh----
Confidence 46777777777666543110 01122345999999999999999999873 22 23445554321100
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhC----CceEEEEEecCCCCC----------h----hHHHHHHHhcCCC--CC
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLN----GKRYLLVMDDVWNED----------P----KVWDKLKSLLSGG--AK 134 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~llvlD~~~~~~----------~----~~~~~l~~~l~~~--~~ 134 (680)
........+...++ ..+.++++|+++... . .....+...+... ..
T Consensus 104 ---------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 104 ---------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp ---------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred ---------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 00011122222232 235799999995321 1 1123333334332 23
Q ss_pred CCEEEEecCchHHHHhhccC-CC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 135 GSKILVTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 135 ~~~iiiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
...++.+|..+......... .+ ...+.++..+.++..++++........... .....++..+.|+.
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS----STTHHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHhcCCCC
Confidence 45566667666432211111 11 135788888889889998876533222211 12357888888876
No 236
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.58 E-value=0.00053 Score=72.02 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
++|+++.++.+...+... ..|.++|++|+|||+||+.++..
T Consensus 24 ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 589999999988888652 37999999999999999999983
No 237
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=2.3e-05 Score=75.11 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCCCcEEecCCccccc--cCcccccccCcccEEEeccccccccccccCccc--ccceeecccccC
Q 042863 452 ELQSLQTLNLEECLELE--ELPKDIRYLVSLRVFEVTTKQKSLQDSGIGCLV--SLRCLIISHCRN 513 (680)
Q Consensus 452 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~--~L~~L~l~~~~~ 513 (680)
.+++|+.|+|++|.+.+ .+|..+..+++|+.|++++|.+..+ ..+..+. +|+.|++.+|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 35555555555554433 3334444555566666655555443 1112222 455555555443
No 238
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.51 E-value=0.0011 Score=67.66 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=34.3
Q ss_pred CCCchhHHHHHHHHHh----cCCC--------------------CCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALM----QTSS--------------------GESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~----~~~~--------------------~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|.++..+.+...+. .... +.......+.++|++|+|||++|+.+++
T Consensus 23 viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 23 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4788888888887762 1000 0012245799999999999999999987
No 239
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.49 E-value=0.0031 Score=64.45 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=33.4
Q ss_pred ccCCCCcccceecccccCCcccchhhhhhhcccCCccceeeeccCCCCCCCCc----CCCCCCeEEE
Q 042863 579 SNTTRPHLRKLLIGQVTPLLELPQWLLQESLRNFQALEGLVIGNCPKLLSLPE----DMLHLKTLRI 641 (680)
Q Consensus 579 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l~~----~~~~L~~l~l 641 (680)
.+..|++|+.+.+.++ .++.++.. ++.+|.+|+.+.|..+ ++.+.. +|.+|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~-~i~~I~~~----aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNS-AIETLEPR----VFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCT-TCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccc-ccceehhh----hhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 4456677777777654 35555542 4457788888877543 444433 4556666655
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.48 E-value=0.00013 Score=78.15 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|-++..+.+.+.+.-..-........+.++|++|+||||||+.++. ..... ...+++.................
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~---~~~i~~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRK---FVRISLGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCE---EEEECCCC---------------
T ss_pred ccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCC---eEEEEecccchhhhhhhHHHHHh
Confidence 45555555554433210000112345899999999999999999987 33222 22333333222111111100000
Q ss_pred cCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCChhH----HHHHHHhcCCCC---------------CCCEEEEec
Q 042863 82 TGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKV----WDKLKSLLSGGA---------------KGSKILVTT 142 (680)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~----~~~l~~~l~~~~---------------~~~~iiiTs 142 (680)
+ .....+...+... ....-++++|+++...... ...+...+.... ....+|.||
T Consensus 159 g------~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt 231 (543)
T 3m6a_A 159 G------AMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA 231 (543)
T ss_dssp -----------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC
T ss_pred c------cCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc
Confidence 0 0011111122221 2233488899997654331 123333332110 345667676
Q ss_pred CchH-HH-HhhccCCCCCceeCCCCChhhHHHHHHHHh
Q 042863 143 RSNK-VA-SVMGTRGGTTGYNLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 143 R~~~-~~-~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 178 (680)
.... +. ...+ +...+.+++++.++-.+++....
T Consensus 232 N~~~~l~~aL~~---R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 232 NNLATIPGPLRD---RMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSTTTSCHHHHH---HEEEEECCCCCHHHHHHHHHHTH
T ss_pred CccccCCHHHHh---hcceeeeCCCCHHHHHHHHHHHH
Confidence 6542 11 1111 12468899999998888887755
No 241
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.47 E-value=0.0024 Score=64.30 Aligned_cols=159 Identities=11% Similarity=-0.004 Sum_probs=102.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH-HhCC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRV-CLNG 104 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~ 104 (680)
.++..++|+.|.||++.+..++.... ...|+....+......+ ..++...+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD---------------------WNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC---------------------HHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC---------------------HHHHHHHhcCcCCcc
Confidence 45899999999999999999987422 23343211222222222 2333322222 2335
Q ss_pred ceEEEEEecCCC-CChhHHHHHHHhcCCCCCCCEEEEecCc-------hHHHHhhccCCCCCceeCCCCChhhHHHHHHH
Q 042863 105 KRYLLVMDDVWN-EDPKVWDKLKSLLSGGAKGSKILVTTRS-------NKVASVMGTRGGTTGYNLQGLPLEDCLSLFMK 176 (680)
Q Consensus 105 ~~~llvlD~~~~-~~~~~~~~l~~~l~~~~~~~~iiiTsR~-------~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 176 (680)
.+-++|+|+++. ......+.+..++..-+.++.+|+++.+ ..+...+. .+...++..++++.+....+..
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~--sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA--NRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHT--TTCEEEEECCCCTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHH--hCceEEEeeCCCHHHHHHHHHH
Confidence 567888999976 5666777788888776667767665532 23333322 2346789999999999999988
Q ss_pred HhcccCCCCCchHHHHHHHHHHhhCCChhHHHHHH
Q 042863 177 CAFKEERDKHPNLVKIGEEIVKKCGGIPLAVRTLG 211 (680)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~l~~~~ 211 (680)
.+...+...++ +.+..+++.++|.+..+....
T Consensus 154 ~~~~~g~~i~~---~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 154 RAKQLNLELDD---AANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHHHTTCEECH---HHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHcCCCCCH---HHHHHHHHHhchHHHHHHHHH
Confidence 87655443333 667899999999998665543
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.47 E-value=0.0012 Score=63.39 Aligned_cols=180 Identities=13% Similarity=0.143 Sum_probs=88.2
Q ss_pred CCCchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.++...++.+....... -+-..++-++|+|++|+|||||++.++.. .. ...+.++... +
T Consensus 18 i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~~------~- 85 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSD------F- 85 (254)
T ss_dssp CCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHHH------H-
T ss_pred hCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHHH------H-
Confidence 35666666665554432110 00011234999999999999999999873 22 2234443211 1
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------Chh---HHHHHHHhcCCC--CCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DPK---VWDKLKSLLSGG--AKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~~---~~~~l~~~l~~~--~~~~~i 138 (680)
.... .......+...+.......+.++++||++.. ... ....+...+... .....+
T Consensus 86 ---~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 86 ---VEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp ---HHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred ---HHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 0000 0000111222222222345689999998321 000 112233233322 223344
Q ss_pred EEecCchHHHHhhccC-CC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 139 LVTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 139 iiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
+.+|..+......-.. .+ ...+.++..+.++..++++............ ....+++.+.|+-
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 221 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 221 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc----CHHHHHHHcCCCC
Confidence 5566655432221111 11 1357888889999899998776433222211 1356788887754
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=0.00091 Score=65.14 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=91.0
Q ss_pred CCCchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSS------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
++|.++..+++......... -+-..++-++|+|++|+|||||++.++.. .. ...+.++... +
T Consensus 42 i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~~------~- 109 (278)
T 1iy2_A 42 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSD------F- 109 (278)
T ss_dssp SSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHHH------H-
T ss_pred hCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHHH------H-
Confidence 46767666666555432110 00011234899999999999999999873 22 2344444321 1
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC-----------Ch---hHHHHHHHhcCCCC--CCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE-----------DP---KVWDKLKSLLSGGA--KGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~-----------~~---~~~~~l~~~l~~~~--~~~~i 138 (680)
.... .......+...+.......+.++++||++.. .. .....+...+.... ....+
T Consensus 110 ---~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~ 181 (278)
T 1iy2_A 110 ---VEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 181 (278)
T ss_dssp ---HHST-----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEE
T ss_pred ---HHHH-----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 0000 0000111122222222345689999998321 00 11122333333322 22334
Q ss_pred EEecCchHHHH-hhccCC-CCCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh-hHHHH
Q 042863 139 LVTTRSNKVAS-VMGTRG-GTTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP-LAVRT 209 (680)
Q Consensus 139 iiTsR~~~~~~-~~~~~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~l~~ 209 (680)
+.+|..+.... ...... -...+.++..+.++..++++............ ....++..+.|+. ..|..
T Consensus 182 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~~~dl~~ 251 (278)
T 1iy2_A 182 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFVGADLEN 251 (278)
T ss_dssp EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHHH
T ss_pred EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc----CHHHHHHHcCCCCHHHHHH
Confidence 44555543221 111111 12468899999999999998776433222211 1356788888765 44443
No 244
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.0023 Score=65.54 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=41.4
Q ss_pred ccCCcccceeecccccCcccCCccCCCCCCcCeEeecCCCCccccccccccCCCCcCcccCCCCcccceecccccCCccc
Q 042863 521 IDQLRVLRSLLIAGCPCLISLPPAMRYLSSLETLMFVECESLSLNLSMQLEGEGSHQASNTTRPHLRKLLIGQVTPLLEL 600 (680)
Q Consensus 521 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 600 (680)
+..+.+|+.+.+..+ ...--...+.+|++|+.+.+.++.. . ..-...+..|.+|+.+.+.. .++.+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i-~----------~I~~~aF~~c~~L~~i~lp~--~l~~I 324 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAI-E----------TLEPRVFMDCVKLSSVTLPT--ALKTI 324 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTC-C----------EECTTTTTTCTTCCEEECCT--TCCEE
T ss_pred cceeehhcccccccc-ceecccccccccccccccccccccc-c----------eehhhhhcCCCCCCEEEcCc--cccEE
Confidence 334455555554332 1111123355666666666644311 0 01123445667777777754 25555
Q ss_pred chhhhhhhcccCCccceeeecc
Q 042863 601 PQWLLQESLRNFQALEGLVIGN 622 (680)
Q Consensus 601 ~~~~~~~~l~~~~~L~~L~l~~ 622 (680)
+.. ++.+|++|+.+.+..
T Consensus 325 ~~~----aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 325 QVY----AFKNCKALSTISYPK 342 (379)
T ss_dssp CTT----TTTTCTTCCCCCCCT
T ss_pred HHH----HhhCCCCCCEEEECC
Confidence 542 345677777776643
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.39 E-value=0.00013 Score=72.09 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhh-hcCCcEEEEEe
Q 042863 5 DKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVE-EHFELKIWICI 64 (680)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~ 64 (680)
...++.+.+++.... .+....++++|++|+|||+||..+++ ... .....+.++++
T Consensus 134 ~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 344555666665532 12246899999999999999999998 443 33334666655
No 246
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.31 E-value=0.00079 Score=68.14 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
++|++...+.+...... .....+.++|++|+|||++|+.+++.
T Consensus 26 i~G~~~~~~~l~~~~~~------~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 26 IVGQEDMKLALLLTAVD------PGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp SCSCHHHHHHHHHHHHC------GGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred ccChHHHHHHHHHHhhC------CCCceEEEECCCCccHHHHHHHHHHh
Confidence 57888766665444432 11234999999999999999999873
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.31 E-value=0.00078 Score=75.73 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=94.5
Q ss_pred CCCchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHH
Q 042863 1 IIGRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQI 73 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (680)
++|.+++++.+.+.+..+. .-.-...+.|.|+|++|+||||||+.++. ..... .+.+++..
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~---~i~v~~~~------- 273 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE------- 273 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCE---EEEEEHHH-------
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCc---EEEEEchH-------
Confidence 4788888888888875310 00113346799999999999999999987 33222 23444321
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCC-----------hhHHHHHHHhcCCC--CCCCEEEE
Q 042863 74 MTKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNED-----------PKVWDKLKSLLSGG--AKGSKILV 140 (680)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~-----------~~~~~~l~~~l~~~--~~~~~iii 140 (680)
+... ........+...+.......+.++++|+++... ......+...+... .....+|.
T Consensus 274 -------l~~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 274 -------IMSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp -------HSSS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred -------hhhh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEec
Confidence 1000 001111222233333334457899999984311 01122333333322 23455666
Q ss_pred ecCchH-HHHhhccCCCC-CceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCCCh
Q 042863 141 TTRSNK-VASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGGIP 204 (680)
Q Consensus 141 TsR~~~-~~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 204 (680)
||..+. +........+. ..+.+...+.++..++++............. ...++..+.|.-
T Consensus 346 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp ECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred ccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 666542 21111111111 3467888889999999987764433222211 245666666543
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.28 E-value=0.00024 Score=65.94 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=64.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC--CCcCHHHHHHHHHHHhCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ--GDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 104 (680)
.+++++|+.|+||||++.++++ +...+...++.+...... + ....++..++.... ......++.+.+.+...+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 5889999999999999999988 444443345555433321 1 11223333332111 112234444444444433
Q ss_pred c-eEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch
Q 042863 105 K-RYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN 145 (680)
Q Consensus 105 ~-~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~ 145 (680)
. .-+||+|+++..+....+.+...... +..||+|-+..
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl~~ 126 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGLDK 126 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECCSB
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEeccc
Confidence 3 45999999987665555555443332 67789888754
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.21 E-value=0.00025 Score=63.67 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=67.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc---CCHHHHHHHHHHHhc--CCC--CCCcC-------H
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED---FGERQIMTKIIKSIT--GQN--QGDLD-------I 91 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~~~--~~~~~-------~ 91 (680)
...|.|++..|.||||.|-..+. +...+--.+.++..... .....++..+.-.+. ... ....+ .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 34788888888999999977776 55555455777765442 222233333210000 000 01111 1
Q ss_pred HHHHHHHHHHhCCce-EEEEEecCCC---CChhHHHHHHHhcCCCCCCCEEEEecCchH
Q 042863 92 EQLQRILRVCLNGKR-YLLVMDDVWN---EDPKVWDKLKSLLSGGAKGSKILVTTRSNK 146 (680)
Q Consensus 92 ~~~~~~~~~~l~~~~-~llvlD~~~~---~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~ 146 (680)
......+.+.+.+.+ -+||+|++-. ......+.+..++...+....||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 222333444454444 4999999822 233344667777777777788999999863
No 250
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.21 E-value=0.0036 Score=60.49 Aligned_cols=131 Identities=21% Similarity=0.131 Sum_probs=69.0
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH-hCCce
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC-LNGKR 106 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~ 106 (680)
-+.++|++|+||||||+.++.. ... ..++++...-.... ..........+-+. ....+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~~----------------~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNMY----------------VGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSST----------------THHHHHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhhh----------------hhHHHHHHHHHHHHHHhcCC
Confidence 3999999999999999999873 221 24455433211100 00011111122221 13456
Q ss_pred EEEEEecCCCCCh-----------hHHHHHHHhcCCC--CCCCEEEEecCchHHHHhhccC-CC-CCceeCCCCChhhHH
Q 042863 107 YLLVMDDVWNEDP-----------KVWDKLKSLLSGG--AKGSKILVTTRSNKVASVMGTR-GG-TTGYNLQGLPLEDCL 171 (680)
Q Consensus 107 ~llvlD~~~~~~~-----------~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~~~~~~-~~-~~~~~l~~l~~~~~~ 171 (680)
.++++|++..... .....+...+... .....++.+|..+......-.+ ++ .+.+.++..+.++..
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999854110 1112222233321 2234455566655433222111 11 245789999999999
Q ss_pred HHHHHHhc
Q 042863 172 SLFMKCAF 179 (680)
Q Consensus 172 ~l~~~~~~ 179 (680)
++++....
T Consensus 185 ~il~~~~~ 192 (274)
T 2x8a_A 185 AILKTITK 192 (274)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988764
No 251
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.10 E-value=0.0023 Score=59.63 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=50.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC-----------CCCCC-cCHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG-----------QNQGD-LDIEQL 94 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~-~~~~~~ 94 (680)
.++.|.|++|+|||||+..++. ..-..++|++.........+. .+....+. ..... .+..+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 4899999999999999999987 223468888877644544333 23322211 11111 122334
Q ss_pred HHHHHHHhCCceEEEEEecCCC
Q 042863 95 QRILRVCLNGKRYLLVMDDVWN 116 (680)
Q Consensus 95 ~~~~~~~l~~~~~llvlD~~~~ 116 (680)
...+....+...-+||+|.+..
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHH
Confidence 4444445444567899998854
No 252
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.07 E-value=0.00052 Score=66.70 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=44.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEe--CCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICI--SEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 104 (680)
+.+.|+|++|+|||+||.+++.. .. ..+.|++. .+..+. ...+.++..+.+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~----~G-~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA----LG-GKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH----HH-TTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh----CC-CCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHhh
Confidence 56789999999999999999873 11 23557776 221000 013455555555555554
Q ss_pred ceEEEEEecCCC
Q 042863 105 KRYLLVMDDVWN 116 (680)
Q Consensus 105 ~~~llvlD~~~~ 116 (680)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 55 999999954
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.99 E-value=0.0023 Score=63.86 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 100 (680)
-+++.|+|++|+||||||.+++.. ....-..++|++........ .++.++... ....+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 369999999999999999999873 33333457899877666544 344444221 123456666666665
Q ss_pred HhC-CceEEEEEecCCC
Q 042863 101 CLN-GKRYLLVMDDVWN 116 (680)
Q Consensus 101 ~l~-~~~~llvlD~~~~ 116 (680)
..+ ...-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 553 4456888998844
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.96 E-value=0.0041 Score=60.11 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=54.6
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhc--CCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC-----CCcCHHHH-HHHHH
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEH--FELKIWICISEDFGERQIMTKIIKSITGQNQ-----GDLDIEQL-QRILR 99 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~-~~~~~ 99 (680)
++.|+|++|+|||||+.+++.. .... -..++|++..+..... .++.++.+.. .+.+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999999873 3333 3468899988777653 2556654321 23355665 44443
Q ss_pred HH--h-CCceEEEEEecCCC
Q 042863 100 VC--L-NGKRYLLVMDDVWN 116 (680)
Q Consensus 100 ~~--l-~~~~~llvlD~~~~ 116 (680)
.. + +...-+||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 33 2 34567999998854
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.95 E-value=0.0024 Score=60.14 Aligned_cols=114 Identities=19% Similarity=0.161 Sum_probs=61.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC--------------------
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ-------------------- 86 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------- 86 (680)
.+++|.|++|+|||||++.++.. ....-..++|++... ....+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 58999999999999999999863 222223577776543 233333322 23321100
Q ss_pred ---CCcCHHHHHHHHHHHhCC-ce--EEEEEecCCCC---ChhHHHHHHHhcCC--CCCCCEEEEecCch
Q 042863 87 ---GDLDIEQLQRILRVCLNG-KR--YLLVMDDVWNE---DPKVWDKLKSLLSG--GAKGSKILVTTRSN 145 (680)
Q Consensus 87 ---~~~~~~~~~~~~~~~l~~-~~--~llvlD~~~~~---~~~~~~~l~~~l~~--~~~~~~iiiTsR~~ 145 (680)
...+.+++...+.+.+.. +. .++|+|+.... +......+...+.. ...+..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 112556655555554422 23 49999998531 33333333333322 12366688887654
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.92 E-value=0.0077 Score=53.82 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=39.9
Q ss_pred hCCceEEEEEecCC--C-CChhHHHHHHHhcCCCCCCCEEEEec---CchHHHHhhccCCCCCceeCCCCChhhHHH
Q 042863 102 LNGKRYLLVMDDVW--N-EDPKVWDKLKSLLSGGAKGSKILVTT---RSNKVASVMGTRGGTTGYNLQGLPLEDCLS 172 (680)
Q Consensus 102 l~~~~~llvlD~~~--~-~~~~~~~~l~~~l~~~~~~~~iiiTs---R~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 172 (680)
+...+-++|+|++. . .+......+...+.. .+..+|++| .+..+..........+.+++.....++..+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 55667799999942 2 344455556666665 244466666 344444444443444677877776655544
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.88 E-value=0.0033 Score=63.24 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=55.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRVC 101 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~ 101 (680)
+++.|+|++|+|||+||.+++. .....-..++|++.....+.. .++.++... ....+.+++...+.+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 5889999999999999999987 333333468999988765543 133343221 1234566777777666
Q ss_pred hCC-ceEEEEEecCCC
Q 042863 102 LNG-KRYLLVMDDVWN 116 (680)
Q Consensus 102 l~~-~~~llvlD~~~~ 116 (680)
.+. ..-+||+|.+..
T Consensus 148 ~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HTTTCCSEEEEECTTT
T ss_pred HhcCCCCEEEEeChHH
Confidence 543 345899998854
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.84 E-value=0.0034 Score=62.85 Aligned_cols=84 Identities=19% Similarity=0.143 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 100 (680)
-+++.|+|++|+||||||.+++. .....-..++|++.....+.. .++.++... ....+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 35899999999999999999987 333333468899887755543 234443221 122356666666655
Q ss_pred HhCC-ceEEEEEecCCC
Q 042863 101 CLNG-KRYLLVMDDVWN 116 (680)
Q Consensus 101 ~l~~-~~~llvlD~~~~ 116 (680)
..+. ..-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 5543 456899999854
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.76 E-value=0.0021 Score=71.03 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=79.5
Q ss_pred CchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHH
Q 042863 3 GRDKDREKIIEALMQTS-------SGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMT 75 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (680)
|-++..+.+.+.+.-+. ..+-..++-+.+|||+|.|||.+|+.++. ..... ++.+.. ..
T Consensus 481 gl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f~~v~~----~~--- 546 (806)
T 3cf2_A 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIKG----PE--- 546 (806)
T ss_dssp SCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----EEECCH----HH---
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCc-----eEEecc----ch---
Confidence 45566666666554321 11223456789999999999999999998 33222 333321 11
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCCCh--------------hHHHHHHHhcCCCC--CCCEEE
Q 042863 76 KIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNEDP--------------KVWDKLKSLLSGGA--KGSKIL 139 (680)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~--------------~~~~~l~~~l~~~~--~~~~ii 139 (680)
++... ...+...+.+.+...-+..+++|+||+++..-. ....++...+.... .+..||
T Consensus 547 -l~s~~-----vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 547 -LLTMW-----FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp -HHTTT-----CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred -hhccc-----cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 11111 112233344444444456789999999853110 01233444444322 233344
Q ss_pred EecCchHHH-HhhccCCC-CCceeCCCCChhhHHHHHHHHhcccCCCCCchHHHHHHHHHHhhCC
Q 042863 140 VTTRSNKVA-SVMGTRGG-TTGYNLQGLPLEDCLSLFMKCAFKEERDKHPNLVKIGEEIVKKCGG 202 (680)
Q Consensus 140 iTsR~~~~~-~~~~~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 202 (680)
-||..+... ..+...++ .+.+.++.-+.++..++|+....+......-+ ...|++.+.|
T Consensus 621 ~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g 681 (806)
T 3cf2_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNG 681 (806)
T ss_dssp CC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred EeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCC
Confidence 455544221 11111111 24677877777888888877664433222212 3456666655
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.69 E-value=0.0032 Score=63.10 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=53.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 100 (680)
-+++.|+|++|+||||||.+++. .....-..++|++.....+... +..++... ..+.+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 35899999999999999999987 3333334688999877665432 33343221 112244555555544
Q ss_pred HhC-CceEEEEEecCCC
Q 042863 101 CLN-GKRYLLVMDDVWN 116 (680)
Q Consensus 101 ~l~-~~~~llvlD~~~~ 116 (680)
..+ ...-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 432 3445889998844
No 261
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.44 E-value=0.012 Score=57.72 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=27.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCC-cEEEEEeC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFE-LKIWICIS 65 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~-~~~~~~~~ 65 (680)
.+++|.|++|+|||||++.++.. ...... .++|++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 48999999999999999999873 322212 46677643
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.39 E-value=0.0063 Score=55.79 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=34.9
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|++.++.+.+.+... ......+++|.|++|+||||+++.++.
T Consensus 2 ~~~~~~~~l~~~~~~~---~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---ccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677888888888753 234567999999999999999999987
No 263
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.38 E-value=0.015 Score=57.44 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=35.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
.++.|.|.+|+||||+|..++.. ....-..++|++.. -+..++..+++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 58999999999999999999873 33333457787764 3455666666544
No 264
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.38 E-value=0.021 Score=57.08 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhh----cCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEE----HFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
-.++.|+|++|+|||+||.+++....... .-..++|++....++...+.. ++..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 46899999999999999999987422211 224688999887666554433 33444
No 265
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.37 E-value=0.00057 Score=61.70 Aligned_cols=107 Identities=17% Similarity=0.082 Sum_probs=52.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC--CCCCcCHHHHHHHHHHHhCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ--NQGDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~ 104 (680)
.+++++|+.|+||||++.+.++... ..-..++++...... +.....+...++.. .....+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~--~~g~~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK--LGKKKVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH--HTTCEEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeecccc--ccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 3788999999999999987776322 221224444322110 00000000000000 000001111 1112233
Q ss_pred ceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCc
Q 042863 105 KRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRS 144 (680)
Q Consensus 105 ~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~ 144 (680)
..-+|++|+++..++...+.+....+. +..|++|.+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEES
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeec
Confidence 456999999988755555555544443 6678887763
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.35 E-value=0.0076 Score=59.89 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=37.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc----CCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH----FELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
.++.|+|++|+|||+||.+++........ -..++|++....++...+. +++..+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 58999999999999999999873221110 2468899888766555443 334444
No 267
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.31 E-value=0.0094 Score=56.43 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=50.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhh----cCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC---------CCCcCHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEE----HFELKIWICISEDFGERQIMTKIIKSITGQN---------QGDLDIEQ 93 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~ 93 (680)
.++.|+|++|+|||||++.++....... .-..++|++.........+ .++++.++... ....+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5899999999999999999987321211 1346889987764444332 23334443211 01122332
Q ss_pred H---HHHHHHHhC-CceEEEEEecCCC
Q 042863 94 L---QRILRVCLN-GKRYLLVMDDVWN 116 (680)
Q Consensus 94 ~---~~~~~~~l~-~~~~llvlD~~~~ 116 (680)
. ...+.+.++ .+.-+||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 222333332 4567888998843
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.19 E-value=0.012 Score=57.27 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC-CHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF-GERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLN 103 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 103 (680)
..+++++.|++|+||||++..++..... ..-..+.+++..... ...+.+....+..+.+.....+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4569999999999999999999873222 122346667655422 22222333333333222222344444444443 3
Q ss_pred CceEEEEEecC
Q 042863 104 GKRYLLVMDDV 114 (680)
Q Consensus 104 ~~~~llvlD~~ 114 (680)
...-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34468889954
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.13 E-value=0.034 Score=53.90 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcCCHHHHHHHHHHHh-----c-CC-CCCCcCHHHH
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDFGERQIMTKIIKSI-----T-GQ-NQGDLDIEQL 94 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~-~~-~~~~~~~~~~ 94 (680)
...+.+|+|.|+.|+||||||+.++....... ....+..+......-.......+.... . .. .+...+.+.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 45678999999999999999999987432211 123344445444332233333333221 1 11 1334556666
Q ss_pred HHHHHHHhCC
Q 042863 95 QRILRVCLNG 104 (680)
Q Consensus 95 ~~~~~~~l~~ 104 (680)
.+.+.....+
T Consensus 108 ~~~l~~l~~g 117 (290)
T 1odf_A 108 QEVLNTIFNN 117 (290)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHhhcc
Confidence 6666665443
No 270
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.13 E-value=0.0041 Score=63.08 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=35.7
Q ss_pred CCCchhHHHHHHHHHhcC-------C--CCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALMQT-------S--SGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~-------~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|.+..++.+...+... . .......+.+.++|++|+|||++|+.+++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 478999999888887310 0 01112456799999999999999999987
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.12 E-value=0.014 Score=57.34 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhh--cCCcEEEEEeCCcCCHHHHHHH--HH
Q 042863 3 GRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEE--HFELKIWICISEDFGERQIMTK--II 78 (680)
Q Consensus 3 gR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (680)
|..+.+..+...+.... ..+.+.+++|.|+.|+||||+++.+.. .... .-..+..+.............. +.
T Consensus 71 ~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~--ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~ 146 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA--LLSRWPDHPNVEVITTDGFLYSNAKLEKQGLM 146 (321)
T ss_dssp HHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCG
T ss_pred cchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH--HhcccCCCCeEEEEeecccccchhhhhhHHHH
Confidence 33445555555555421 345678999999999999999999876 3221 1123445554442222221111 00
Q ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 79 KSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
... ..+...+.+.+.+.+.....++
T Consensus 147 ~~~--g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 147 KRK--GFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp GGT--TSGGGBCHHHHHHHHHHHHTTC
T ss_pred hhc--cCcccccHHHHHHHHHhhhccc
Confidence 111 1233456666777776665554
No 272
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.08 E-value=0.012 Score=58.51 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=37.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhh---------cC-----CcEEEEEeCCcCCHHHHHHHHHHHhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEE---------HF-----ELKIWICISEDFGERQIMTKIIKSIT 82 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (680)
-.++.|+|++|+|||++|.+++....... .. ..++|++....++...+.. ++..++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 46899999999999999999986422211 11 3688998887665555443 344443
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.04 E-value=0.06 Score=55.15 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
+.+++|.++|++|+||||++..++. .....-..+..+++..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~--~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLAR--YFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 3578999999999999999999987 3333333455555443
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.02 E-value=0.025 Score=55.25 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCH-HHHHHHHHHHhcCC---CCCCcCHHHH-HHHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGE-RQIMTKIIKSITGQ---NQGDLDIEQL-QRIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~---~~~~~~~~~~-~~~~ 98 (680)
....++.++|++|+||||++..++. .....-..+.+++....... .+.+...+...+.. .....+...+ ...+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4568999999999999999999997 33333334666665432111 11123334443321 1112233332 3344
Q ss_pred HHHhCCceEEEEEecCCC
Q 042863 99 RVCLNGKRYLLVMDDVWN 116 (680)
Q Consensus 99 ~~~l~~~~~llvlD~~~~ 116 (680)
.+.+....-++|+|....
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 444445556888897743
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.01 E-value=0.11 Score=51.17 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=36.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
.++.|.|.+|+|||++|.+++.. ....-..++|++.. .+..++..++...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEECC--CCHHHHHHHHHHH
Confidence 58999999999999999999873 32222568888766 4556666666554
No 276
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.95 E-value=0.033 Score=56.72 Aligned_cols=129 Identities=18% Similarity=0.279 Sum_probs=67.9
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
+|....++++.+.+...+ .....|.+.|++|+|||++|+.+... ........+-+++..- ....+. .++
T Consensus 140 ig~s~~m~~l~~~i~~~a----~~~~~vli~Ge~GtGK~~lAr~ih~~--s~r~~~~fv~v~~~~~--~~~~~~---~el 208 (387)
T 1ny5_A 140 VFESPKMKEILEKIKKIS----CAECPVLITGESGVGKEVVARLIHKL--SDRSKEPFVALNVASI--PRDIFE---AEL 208 (387)
T ss_dssp CCCSHHHHHHHHHHHHHT----TCCSCEEEECSTTSSHHHHHHHHHHH--STTTTSCEEEEETTTS--CHHHHH---HHH
T ss_pred hhccHHhhHHHHHHHHhc----CCCCCeEEecCCCcCHHHHHHHHHHh--cCCCCCCeEEEecCCC--CHHHHH---HHh
Confidence 566666777777666533 12234699999999999999888762 1222223445555542 222222 222
Q ss_pred cCCCCCCcC--HHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCc
Q 042863 82 TGQNQGDLD--IEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRS 144 (680)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~ 144 (680)
++....... .......+.. ...-.+++|++..........+..++... ...++||.||..
T Consensus 209 fg~~~g~~tga~~~~~g~~~~---a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 209 FGYEKGAFTGAVSSKEGFFEL---ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp HCBCTTSSTTCCSCBCCHHHH---TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred cCCCCCCCCCcccccCCceee---CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 221110000 0000011111 12246789999888777766666655421 135677877764
No 277
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.94 E-value=0.026 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++.|+|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 278
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.75 E-value=0.00077 Score=75.77 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=77.0
Q ss_pred CCchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHH
Q 042863 2 IGRDKDREKIIEALMQTSS-------GESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIM 74 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (680)
+|-++..+.+.+.+..... -.-...+.+.++|++|+|||+||+.++. .....| +.++...-.
T Consensus 480 ~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~--~~~~~~---i~v~~~~l~------ 548 (806)
T 1ypw_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF---ISIKGPELL------ 548 (806)
T ss_dssp SCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH--HHTCCC---CCCCCSSST------
T ss_pred ccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH--HhCCCE---EEEechHhh------
Confidence 4556666666665542110 0112345789999999999999999998 333322 122221110
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCceEEEEEecCCCC--------C------hhHHHHHHHhcCCC--CCCCEE
Q 042863 75 TKIIKSITGQNQGDLDIEQLQRILRVCLNGKRYLLVMDDVWNE--------D------PKVWDKLKSLLSGG--AKGSKI 138 (680)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlD~~~~~--------~------~~~~~~l~~~l~~~--~~~~~i 138 (680)
.. ........+...+...-...+.++++|+++.. . ......+...+... ..+..|
T Consensus 549 --------~~-~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~v 619 (806)
T 1ypw_A 549 --------TM-WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp --------TC-CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred --------hh-hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEE
Confidence 00 00011111222222222234578899997421 0 01112333333322 224445
Q ss_pred EEecCchHH-HHhhccCCCC-CceeCCCCChhhHHHHHHHHhcc
Q 042863 139 LVTTRSNKV-ASVMGTRGGT-TGYNLQGLPLEDCLSLFMKCAFK 180 (680)
Q Consensus 139 iiTsR~~~~-~~~~~~~~~~-~~~~l~~l~~~~~~~l~~~~~~~ 180 (680)
|.||..+.. .......++. ..+.++..+.++..++++.....
T Consensus 620 I~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred EEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 556654422 1111110112 35778888889999998877643
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.72 E-value=0.049 Score=55.74 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=49.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC-HHHHHHHHHHHhcCCC---CCCcCHHHHH-HHH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG-ERQIMTKIIKSITGQN---QGDLDIEQLQ-RIL 98 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~ 98 (680)
..++++.+.|++|+||||++..++. .....-..+..+++..... ..+.+.......+.+. ....+...+. ..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 3578999999999999999999997 3333333466666553221 1122222333333221 1122333333 333
Q ss_pred HHHhCCceEEEEEecCCC
Q 042863 99 RVCLNGKRYLLVMDDVWN 116 (680)
Q Consensus 99 ~~~l~~~~~llvlD~~~~ 116 (680)
........-++|+|-...
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 333223445778887743
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.72 E-value=0.039 Score=54.48 Aligned_cols=40 Identities=28% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS 65 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 65 (680)
....++++.|+.|+||||+++.++.. ....-..+.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEeec
Confidence 45689999999999999999999873 33322235455433
No 281
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.69 E-value=0.032 Score=59.92 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=52.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH-HHhC--
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILR-VCLN-- 103 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~-- 103 (680)
+++.|.|++|.||||++..++.. ....-..+..+ .... .....+...++.. ....+.+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~--l~~~g~~Vl~~-ApT~----~Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL--AESLGLEVGLC-APTG----KAARRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHHTTCCEEEE-ESSH----HHHHHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEe-cCcH----HHHHHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 58999999999999999999873 33332234333 2221 1222222222211 111111100000 0000
Q ss_pred ---CceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEec
Q 042863 104 ---GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTT 142 (680)
Q Consensus 104 ---~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTs 142 (680)
...-+||+|++...+...+..+...++ .+.++|+.-
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 022499999998777766666655544 456666543
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.67 E-value=0.0051 Score=55.11 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+|+|.|++|+||||+|+.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.65 E-value=0.031 Score=56.81 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=35.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhh----cCCcEEEEEeCCcCCHHHHHHHHHHHhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEE----HFELKIWICISEDFGERQIMTKIIKSIT 82 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (680)
.++.|+|++|+|||||++.++....... .-..++|++......... +..+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcC
Confidence 5899999999999999998763211111 224588998776544433 333445443
No 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.64 E-value=0.053 Score=56.58 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=34.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcCCHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDFGERQIMTKII 78 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (680)
.++.|.|++|+||||||..++.. ... .-..++|++... +..++..+++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 58999999999999999999884 332 223578887653 3455555554
No 285
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.64 E-value=0.018 Score=60.36 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=53.6
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHH--------
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRIL-------- 98 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------- 98 (680)
.+.|.|+||.|||+++..++.. .... ...++.+..+. .....+...++.. ....+......
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~--l~~~~~~~il~~a~T~-----~Aa~~l~~~~~~~---~~T~h~~~~~~~~~~~~~~ 116 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA--LISTGETGIILAAPTH-----AAKKILSKLSGKE---ASTIHSILKINPVTYEENV 116 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSH-----HHHHHHHHHHSSC---EEEHHHHHTEEEEECSSCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHH--HHhcCCceEEEecCcH-----HHHHHHHhhhccc---hhhHHHHhccCcccccccc
Confidence 8999999999999999998873 3222 22344443221 1122222222110 11111110000
Q ss_pred ----H-HHhCCceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEec
Q 042863 99 ----R-VCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTT 142 (680)
Q Consensus 99 ----~-~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTs 142 (680)
. .....+.-++|+|+++..+...+..+...+. .+.++++.-
T Consensus 117 ~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vG 162 (459)
T 3upu_A 117 LFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIG 162 (459)
T ss_dssp EEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEE
T ss_pred hhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEEC
Confidence 0 0000123489999998887777777777665 355566554
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.60 E-value=0.0097 Score=54.86 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+.+++|.+.+... .....+|+|.|++|+|||||++.++..
T Consensus 6 ~~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 6 ALCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555555431 244579999999999999999999873
No 287
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.59 E-value=0.044 Score=58.16 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=36.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
.++.|.|++|+|||++|.+++. ..... -..++|++... +..++..+++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~--~~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQAL--QWGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHH--HHTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHH--HHHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 5889999999999999999987 33332 34578887654 4556666665444
No 288
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.57 E-value=0.051 Score=56.55 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=36.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcCCHHHHHHHHHHHh
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDFGERQIMTKIIKSI 81 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (680)
..+.|.|++|+|||++|..++.. ... .-..++|++.. .+..++..+++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 58999999999999999999874 332 22357888765 34556666665443
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.56 E-value=0.0068 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+|+|.|++|+||||+|++++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.55 E-value=0.014 Score=53.40 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...+|+|.|++|+||||+++.++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999873
No 291
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.55 E-value=0.014 Score=56.76 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...+..++|.|++|+||||+|+.++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999986
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.48 E-value=0.038 Score=55.31 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=30.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcC----CcEEEEEeCCcC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHF----ELKIWICISEDF 68 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~----~~~~~~~~~~~~ 68 (680)
-.++.|+|++|+|||||++.++......... ..++|++.....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 4799999999999999999998742111111 235899876654
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.41 E-value=0.15 Score=49.65 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCH-HHHHHHHHHHhcCC---CCCCcCHHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGE-RQIMTKIIKSITGQ---NQGDLDIEQLQRILRVC 101 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 101 (680)
..++++.|++|+||||++..++. .....-..+.+++....... .+.+.......+.+ .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67899999999999999999987 33333345777776543322 22233334433322 11223444443333333
Q ss_pred hC-CceEEEEEecCCCC
Q 042863 102 LN-GKRYLLVMDDVWNE 117 (680)
Q Consensus 102 l~-~~~~llvlD~~~~~ 117 (680)
++ +.--++|+|-.-..
T Consensus 176 ~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHTTCSEEEEECCCSC
T ss_pred HHhCCCCEEEEeCCCCc
Confidence 32 34447888976433
No 294
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.40 E-value=0.025 Score=57.11 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=80.8
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
++|......++.+.+...+ .....|.+.|++|.||+++|+.+.... ... ...+-+++..-.. ..+. .+
T Consensus 131 ~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~s--~r~-~~fv~vnc~~~~~--~~~~---~~ 198 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRYS--GRK-GAFVDLNCASIPQ--ELAE---SE 198 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHHH--CCC-SCEEEEESSSSCT--TTHH---HH
T ss_pred ccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHhc--ccc-CCcEEEEcccCCh--HHHH---HH
Confidence 3566666666666554422 122358899999999999999887521 111 2244555554321 1111 12
Q ss_pred hcCCCCCCc--CHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcCCC-----------CCCCEEEEecCchHH
Q 042863 81 ITGQNQGDL--DIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLSGG-----------AKGSKILVTTRSNKV 147 (680)
Q Consensus 81 l~~~~~~~~--~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~~~-----------~~~~~iiiTsR~~~~ 147 (680)
+++...... ........+.. .+. -.|++|+++.........+..++... ....++|.+|.....
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~--a~~-gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~ 275 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLEL--ADQ-GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE 275 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHH--TTT-SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH
T ss_pred hcCccccccCCcccccCChHhh--cCC-CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH
Confidence 211110000 00000011111 122 35899999888877777777666421 124567766654321
Q ss_pred HHhhc--------cCCCCCceeCCCCCh--hhHHHHHHHH
Q 042863 148 ASVMG--------TRGGTTGYNLQGLPL--EDCLSLFMKC 177 (680)
Q Consensus 148 ~~~~~--------~~~~~~~~~l~~l~~--~~~~~l~~~~ 177 (680)
..... ++-....+.++||.+ +|...|+...
T Consensus 276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~ 315 (368)
T 3dzd_A 276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYF 315 (368)
T ss_dssp HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHH
Confidence 11110 001123578999988 5655554443
No 295
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.32 E-value=0.052 Score=52.84 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHH-HHHHHHHHHhcCCC---CCCcCHHHHHH-HHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGER-QIMTKIIKSITGQN---QGDLDIEQLQR-ILR 99 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~---~~~~~~~~~~~-~~~ 99 (680)
..+++++.|++|+||||++..++.. ....-..+.+++........ ..+..+....+... ....++.++.+ .+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999873 33333346666654322111 11223333333221 11234444433 333
Q ss_pred HHhCCceEEEEEecC
Q 042863 100 VCLNGKRYLLVMDDV 114 (680)
Q Consensus 100 ~~l~~~~~llvlD~~ 114 (680)
.......-++|+|..
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333244458888976
No 296
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.32 E-value=0.018 Score=57.22 Aligned_cols=21 Identities=33% Similarity=0.132 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.|+|++|+|||||++.+++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHH
Confidence 689999999999999999987
No 297
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.29 E-value=0.02 Score=51.53 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=54.6
Q ss_pred hhHHHhhhcCCccEEEEecC-Cccc-chHHHHHhhccCcceeEEEeCCCCccc-----ccccccCcCCcceeccccccCC
Q 042863 371 DFSRFLSDLGRVRTIFFSIN-DEKV-SQSFVRSCISKSQFLRVLNLSGSAIEA-----LPKEIGNLKHMRYLDLSRNYKI 443 (680)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~ 443 (680)
.+.....+-+.|+.|+++++ .... ....+-..+..-..|+.|+|++|.+.. +...+..-+.|++|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45556666677888888764 3321 123344556667778888888887762 2334444567777777777543
Q ss_pred Cc----cChhhcCCCCCcEEecCCc
Q 042863 444 KK----LPNAICELQSLQTLNLEEC 464 (680)
Q Consensus 444 ~~----~~~~~~~l~~L~~L~l~~~ 464 (680)
.. +...+..-..|++|+|++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 22 2222333445666766643
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.28 E-value=0.0078 Score=53.47 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.27 E-value=0.01 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+++|.|++|+||||+++.++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 300
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.26 E-value=0.02 Score=69.22 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHH
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILR 99 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~ 99 (680)
..+.+.|+|++|+|||+||.+++. .....-..+.|++..+..+... ++.++.+. ......++..+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 357899999999999999999987 4334444688998877665555 34444221 11223455555555
Q ss_pred HHhC-CceEEEEEecCC
Q 042863 100 VCLN-GKRYLLVMDDVW 115 (680)
Q Consensus 100 ~~l~-~~~~llvlD~~~ 115 (680)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 456799999983
No 301
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.24 E-value=0.021 Score=56.04 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=32.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED 67 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 67 (680)
+..++|+|+|-||+||||.+..++. -....-..+.-+++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPK 87 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 4578999999999999999988887 44444445888887753
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.23 E-value=0.017 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|++|+||||+|+.++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999988
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.18 E-value=0.053 Score=53.37 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
...+++.+.|++|+||||++..++. .....-..+.+++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 4568999999999999999999987 3333333466666543
No 304
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.17 E-value=0.018 Score=56.80 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 2 IGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 2 vgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
|+-++..+.+.+.+.... ..+....++|.|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 445566666777765432 2345678999999999999999999873
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.17 E-value=0.0072 Score=54.20 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
|.|+|.||+|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 306
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.16 E-value=0.01 Score=53.29 Aligned_cols=22 Identities=14% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++++|.|++|+|||||++.++.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 307
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.14 E-value=0.018 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...+..+++.|++|+||||+|+.++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999987
No 308
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.11 E-value=0.013 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
-..+++|+|.|++|+||+|.|+.++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999987
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.10 E-value=0.012 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....|+|.|++|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 310
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.08 E-value=0.015 Score=52.44 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 8 REKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+..+..++.. - .....+.++||+|+|||++|..+++
T Consensus 45 ~~~l~~~~~~----i-Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG----T-PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT----C-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc----C-CcccEEEEECCCCCCHHHHHHHHHH
Confidence 4455555533 1 2234699999999999999998887
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.07 E-value=0.026 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.....|++.|++|+||||+++.++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.06 E-value=0.01 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.|++.|++|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 313
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.05 E-value=0.12 Score=53.18 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=32.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhc-CCcEEEEEeCCc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEH-FELKIWICISED 67 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~ 67 (680)
..+++|.++|.+|+||||++..++. ..... -..+..+++...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecCCC
Confidence 4578999999999999999999997 44443 345677776653
No 314
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.02 E-value=0.052 Score=55.79 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=26.3
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcC-CcEEEEEeCC
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHF-ELKIWICISE 66 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~~~~~~ 66 (680)
.+.|+|++|+|||||+..++.. ....+ ...+++....
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGe 190 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGE 190 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESS
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeecc
Confidence 5889999999999999999873 33222 3445555544
No 315
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.02 E-value=0.01 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.|+|.|++|+||||+++.++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.02 E-value=0.011 Score=52.55 Aligned_cols=20 Identities=45% Similarity=0.737 Sum_probs=18.6
Q ss_pred EEEEEEcCCCChHHHHHHHh
Q 042863 27 SVIPIVGIGGLGKTALAQLV 46 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~ 46 (680)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 317
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.96 E-value=0.23 Score=51.36 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=34.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKS 80 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (680)
..+.|.|.+|+|||++|.+++.. ....-..++|++... +..++..+++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSS--CTTHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCC--CHHHHHHHHHHH
Confidence 58999999999999999999884 333334577876553 344555555443
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.95 E-value=0.03 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..|+|.|++|+||||+|+.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.94 E-value=0.0098 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|++|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.89 E-value=0.018 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+++|.|++|+||||+++.++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.87 E-value=0.013 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++++|.|++|+|||||++.++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.86 E-value=0.011 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+|+|.|++|+||||+|+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 323
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.84 E-value=0.29 Score=51.22 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=29.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
..+++|.++|.+|+||||++..++. .....-..+..++...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~--~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY--YYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEeccc
Confidence 4578999999999999999999997 3333323466666544
No 324
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.84 E-value=0.015 Score=52.45 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=52.7
Q ss_pred chHHHHHhhccCcceeEEEeCCC-Ccc-----cccccccCcCCcceeccccccCCCc----cChhhcCCCCCcEEecCCc
Q 042863 395 SQSFVRSCISKSQFLRVLNLSGS-AIE-----ALPKEIGNLKHMRYLDLSRNYKIKK----LPNAICELQSLQTLNLEEC 464 (680)
Q Consensus 395 ~~~~~~~~~~~~~~L~~L~L~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~ 464 (680)
....+...+..-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+... +...+..-+.|+.|+|++|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34455566777788999999885 665 2334455566778888877754322 2222333456777777766
Q ss_pred ccccc----CcccccccCcccEEEecc
Q 042863 465 LELEE----LPKDIRYLVSLRVFEVTT 487 (680)
Q Consensus 465 ~~~~~----~~~~~~~l~~L~~L~l~~ 487 (680)
.+... +...+..-..|+.|++++
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 54322 222233334455555543
No 325
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.82 E-value=0.011 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++++|.|+.|+|||||++.++.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.77 E-value=0.021 Score=57.15 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=59.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEE-EEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKI-WICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGK 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 105 (680)
..++|.|+.|+||||+.+.++. .........+ .+........... .....+.............+...+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~e~~~~~~-----~~~v~q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPIEFVHESK-----KCLVNQREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEBTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcHHhhhhcc-----ccceeeeeeccccCCHHHHHHHHhhhC
Confidence 3899999999999999999886 3332222222 2221111100000 000000000001112334777888888
Q ss_pred eEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHHHH
Q 042863 106 RYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKVAS 149 (680)
Q Consensus 106 ~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~~~ 149 (680)
+-+|++|+.. +.+.++.+..... .|..+++|+-......
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 8999999995 4555554444322 2556888876654443
No 327
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.74 E-value=0.022 Score=58.47 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=34.8
Q ss_pred CCCchhHHHHHHHHHhcC------CC--CCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 1 IIGRDKDREKIIEALMQT------SS--GESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~------~~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|.++..+.+...+... .. .....++.+.++|++|+|||++|+.++.
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 478888888887776321 00 0112346799999999999999999987
No 328
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.74 E-value=0.035 Score=50.50 Aligned_cols=109 Identities=11% Similarity=-0.009 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC--CCcCHHHHHHHHHHHhC
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ--GDLDIEQLQRILRVCLN 103 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~ 103 (680)
-.+.+++|+.|.||||.+...++. ....-..++.+.... +.+.....++..++.... ...+.. .+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 368889999999999999988884 333333344443221 111111223333322111 001111 1112222
Q ss_pred CceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch
Q 042863 104 GKRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN 145 (680)
Q Consensus 104 ~~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~ 145 (680)
+.--+|++|+++-.+.+..+.+....+. +..||+|-++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~~---~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLANR---GYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhhC---CCEEEEEeccc
Confidence 3334999999987766666555544332 66799988854
No 329
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.73 E-value=0.025 Score=53.43 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+..|+|.|++|+||||+|+.++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.72 E-value=0.045 Score=49.68 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|+.|+||||+++.+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.72 E-value=0.016 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+..|+|.|++|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 332
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.69 E-value=0.018 Score=52.10 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|++|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 333
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.68 E-value=0.017 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhh
Q 042863 26 VSVIPIVGIGGLGKTALAQLVF 47 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~ 47 (680)
-.++++.|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999654
No 334
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.68 E-value=0.016 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+++|.|++|+||||+++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 335
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.65 E-value=0.038 Score=60.03 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=35.1
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 1 IIGRDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 1 fvgR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
++|.+..++.+...+... ..+.++|++|+||||||+.++..
T Consensus 43 i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred EECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 578899999888888651 37999999999999999999873
No 336
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.62 E-value=0.014 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++++|.|++|+||||+++.++.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 337
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.62 E-value=0.017 Score=55.00 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++++|.|++|+||||||++++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999987
No 338
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.61 E-value=0.015 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|++|+||||+++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.61 E-value=0.02 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.....|+|.|++|+||||+++.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999986
No 340
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.59 E-value=0.054 Score=48.99 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.58 E-value=0.014 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.|+|.|++|+||||+++.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 342
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.50 E-value=0.018 Score=51.82 Aligned_cols=108 Identities=11% Similarity=0.046 Sum_probs=55.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC--CCcCHHHHHHHHHHHhCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ--GDLDIEQLQRILRVCLNG 104 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 104 (680)
++.+++|+.|.||||.+...++. ....--.++.+.... +.+.....++..++.... ...+.. .+.+.+.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r--~~~~g~kV~v~k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~~ 80 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRR--AKIAKQKIQVFKPEI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFEE 80 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEecc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHHhc
Confidence 68999999999999999988884 322222233332111 001000111111111000 000111 22333333
Q ss_pred ceEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCch
Q 042863 105 KRYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSN 145 (680)
Q Consensus 105 ~~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~ 145 (680)
.--+|++|+++..+....+.+....+. +..||+|.++.
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAGLDM 118 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEECSB
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEeccc
Confidence 334999999987666666666554332 56788888754
No 343
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.49 E-value=0.019 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 344
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.49 E-value=0.18 Score=47.11 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+.+.|+.|+||||++..+..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4799999999999998776654
No 345
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.46 E-value=0.063 Score=65.05 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=57.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCC-----CCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQ-----GDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~ 100 (680)
-+++.|+|++|+||||||.+++. .....-..++|++.....+... ++.++.+.. .+.+.+++...+.+
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 46899999999999999999988 3333334688998877665432 445543321 23466777666665
Q ss_pred Hh-CCceEEEEEecCCCC
Q 042863 101 CL-NGKRYLLVMDDVWNE 117 (680)
Q Consensus 101 ~l-~~~~~llvlD~~~~~ 117 (680)
.. +...-+||+|-++..
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 44 244569999988553
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.45 E-value=0.021 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+..|+|.|++|+||||+|+.++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999987
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.44 E-value=0.031 Score=51.65 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.44 E-value=0.019 Score=51.79 Aligned_cols=24 Identities=13% Similarity=0.488 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+.++|.|+.|+|||||++.++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 349
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.42 E-value=0.064 Score=49.23 Aligned_cols=40 Identities=10% Similarity=-0.104 Sum_probs=28.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED 67 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 67 (680)
.-.|++.|.||+||||+|..++. .....-..+.++++...
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~--~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAH--AQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHH--HHHHCCCCEEEEEeCCC
Confidence 34588999999999999988887 44333334666666553
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.42 E-value=0.02 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+++.++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 351
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.40 E-value=0.12 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+++|+|++|+|||||++.++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3457999999999999999999987
No 352
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.40 E-value=0.019 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 353
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.38 E-value=0.022 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+.+|+|.|+.|+||||+++.++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 354
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.38 E-value=0.019 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 355
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.36 E-value=0.14 Score=64.19 Aligned_cols=138 Identities=13% Similarity=0.056 Sum_probs=74.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH-hCCc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVC-LNGK 105 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~ 105 (680)
+.|.++||+|+|||++|++++.. . ..+ ....++++...+...+...+-..+......... +-.. -.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 57999999999999999877652 1 122 355677777776655544443333211000000 0000 0356
Q ss_pred eEEEEEecCCCCCh------hHHHHHHHhcCCCC------------CCCEEEEecCchH------H-HHhhccCCCCCce
Q 042863 106 RYLLVMDDVWNEDP------KVWDKLKSLLSGGA------------KGSKILVTTRSNK------V-ASVMGTRGGTTGY 160 (680)
Q Consensus 106 ~~llvlD~~~~~~~------~~~~~l~~~l~~~~------------~~~~iiiTsR~~~------~-~~~~~~~~~~~~~ 160 (680)
++++++||+.-... ...+.+..++...+ .+..+|.++..+. + ....+ ....+
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR---rf~vi 1413 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR---HAAIL 1413 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT---TEEEE
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh---eeeEE
Confidence 78999999632211 23444554443211 1233444443321 1 11111 12458
Q ss_pred eCCCCChhhHHHHHHHHh
Q 042863 161 NLQGLPLEDCLSLFMKCA 178 (680)
Q Consensus 161 ~l~~l~~~~~~~l~~~~~ 178 (680)
.++..++++-..+|....
T Consensus 1414 ~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 899999999999988765
No 356
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.35 E-value=0.11 Score=53.39 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=33.4
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcC-CHHHHHHHHHH
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDF-GERQIMTKIIK 79 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (680)
-+.|+|.+|+|||+|+.++++ .+.+ +-+.++|+-+.... ...++.+++..
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 488999999999999999988 3322 23566777666543 23344444443
No 357
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.34 E-value=0.023 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|++.|++|+||||+++.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 358
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.33 E-value=0.036 Score=52.47 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=29.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
.++.|.|++|+||||||.+++. .....-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccC
Confidence 4899999999999999998886 3333334688887654
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.32 E-value=0.026 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....|+|.|++|+||||+|+.++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.32 E-value=0.11 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|++.|+.|+||||+++.++.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 361
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.29 E-value=0.024 Score=52.23 Aligned_cols=23 Identities=43% Similarity=0.368 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+++|.|+.|+|||||++.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.28 E-value=0.017 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.++|.|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 363
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.25 E-value=0.024 Score=54.26 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.25 E-value=0.027 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.+++|.|+.|+|||||++.++..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 365
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.24 E-value=0.22 Score=50.87 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS 65 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 65 (680)
..+++.+.|++|+||||++..++. .....-..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEeecc
Confidence 467899999999999999999987 333333346666554
No 366
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.23 E-value=0.024 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|++|+||||+++.++.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 367
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.22 E-value=0.023 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+|+|.|++|+||||+++.++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 368
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.22 E-value=0.023 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+..++|.|++|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999985
No 369
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.22 E-value=0.039 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..+.|+|.|.+|+|||||+.+++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578889999999999999999874
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.21 E-value=0.02 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|++|+||||+|+.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.20 E-value=0.025 Score=53.83 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+.+|+|.|++|+||||+|+.++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999987
No 372
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.19 E-value=0.017 Score=51.97 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 373
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.18 E-value=0.065 Score=50.01 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=29.5
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhh--h--cCCcEEEEEeCCc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVE--E--HFELKIWICISED 67 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~--~~~~~~~~~~~~~ 67 (680)
-.+++|.|++|+|||||++.++...... . ....++|++....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 3689999999999999999997621111 1 1245778876553
No 374
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.17 E-value=0.028 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+|+|.|++|+||||+++.++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999886
No 375
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.16 E-value=0.017 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=16.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 376
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.036 Score=50.09 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.....|+|.|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44568999999999999999999863
No 377
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.11 E-value=0.028 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+|+|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 378
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.09 E-value=0.019 Score=50.90 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.09 E-value=0.052 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++.|.|+.|+|||||+.+++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 380
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.07 E-value=0.23 Score=53.63 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..++|+|+.|.|||||++.++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 381
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.06 E-value=0.19 Score=47.12 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=57.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC
Q 042863 4 RDKDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG 83 (680)
Q Consensus 4 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (680)
|+.+.+.+..++.. ..+.+.|+.|.|||.+|..++.. . . ..++++. .. ..+..++.+.+..
T Consensus 95 ~~~Q~~ai~~~~~~---------~~~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv~-P~----~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 95 RDYQEKALERWLVD---------KRGCIVLPTGSGKTHVAMAAINE--L--S-TPTLIVV-PT----LALAEQWKERLGI 155 (237)
T ss_dssp CHHHHHHHHHHTTT---------SEEEEEESSSTTHHHHHHHHHHH--S--C-SCEEEEE-SS----HHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHhC---------CCEEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEEe-CC----HHHHHHHHHHHHh
Confidence 44555555554422 13888999999999999887762 2 1 2344442 11 1233333333211
Q ss_pred ---C--------CCC--C---cCHHHHHHHHHHHhCCceEEEEEecCCCCChhHHHHHHHhcC
Q 042863 84 ---Q--------NQG--D---LDIEQLQRILRVCLNGKRYLLVMDDVWNEDPKVWDKLKSLLS 130 (680)
Q Consensus 84 ---~--------~~~--~---~~~~~~~~~~~~~l~~~~~llvlD~~~~~~~~~~~~l~~~l~ 130 (680)
. ... . ...+.+..... .+.++--+||+|+++......+..+...++
T Consensus 156 ~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 156 FGEEYVGEFSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp GCGGGEEEESSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred CCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 1 000 0 12333333333 233445699999998876666666655554
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.02 E-value=0.026 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 383
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.02 E-value=0.055 Score=57.69 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=46.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcC---------------CCCCCcCH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITG---------------QNQGDLDI 91 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~~ 91 (680)
.++.|.|++|+|||||++.++... ...-..++|+..... ...+...+ ..++. ..+...+.
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~--~~~G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA--CANKERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH--HhCCCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 489999999999999999998732 222223566654332 22222222 11111 11122355
Q ss_pred HHHHHHHH-HHhCCceEEEEEecC
Q 042863 92 EQLQRILR-VCLNGKRYLLVMDDV 114 (680)
Q Consensus 92 ~~~~~~~~-~~l~~~~~llvlD~~ 114 (680)
++.++.+. ..+..++-++|+|-.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~ 380 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSL 380 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCh
Confidence 55554444 444566779999944
No 384
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.01 E-value=0.026 Score=51.66 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|+.|+||||+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999987
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.95 E-value=0.079 Score=63.35 Aligned_cols=85 Identities=18% Similarity=0.100 Sum_probs=57.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 100 (680)
-+++.|+|++|+||||||.+++.. ....-..++|++.....+... ++.++.+. ..+.+.+++...+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 468999999999999999999873 334445788998887666531 44444321 123356666666655
Q ss_pred HhC-CceEEEEEecCCCC
Q 042863 101 CLN-GKRYLLVMDDVWNE 117 (680)
Q Consensus 101 ~l~-~~~~llvlD~~~~~ 117 (680)
..+ ...-+||+|-+...
T Consensus 456 lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHhcCCCEEEECCHHHh
Confidence 442 44569999998654
No 386
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.94 E-value=0.05 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...+++|+|++|+||||+++.++.-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999873
No 387
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.91 E-value=0.071 Score=52.38 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCH
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGE 70 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (680)
...++|+|+|-||+||||+|..++. .....-..++-+++....+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~~~~~ 83 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPKHDS 83 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSSCCT
T ss_pred CCceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCCCCCH
Confidence 4567888889999999999999988 44444446888887765433
No 388
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.91 E-value=0.027 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 389
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.89 E-value=0.028 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+|+|.|++|+||||+++.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 390
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.87 E-value=0.046 Score=51.80 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS 65 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 65 (680)
.+++|.|++|+|||||++.++..-.. ..-..++|+...
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 58999999999999999999842121 223456666543
No 391
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.85 E-value=0.028 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|++|+||||+|+.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.85 E-value=0.029 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|++|+|||||++.++.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.84 E-value=0.05 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+++.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 394
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.83 E-value=0.03 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 395
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.78 E-value=0.037 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+|+|.|+.|+|||||++.++.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 396
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.75 E-value=0.025 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999986
No 397
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.74 E-value=0.12 Score=51.95 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS 65 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 65 (680)
+...+|+|.|.+|+||||++..++.. ....-..+.-++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~--l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH--LIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH--HHhCCCceEEEecC
Confidence 45789999999999999999999873 32222334445444
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.72 E-value=0.028 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.71 E-value=0.037 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|+.|+||||+++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 400
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.71 E-value=0.13 Score=46.70 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=32.9
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHH
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
.|++-|.-|+||||.++.+++ ........+++..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 477889999999999999987 55444334555554444444455555443
No 401
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.66 E-value=0.25 Score=45.27 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=31.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcCCHHHHHHHHHH
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDFGERQIMTKIIK 79 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (680)
..|.+.|+.|+||||+++.++. .... .+..+.+..-......-+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999987 4333 3434444433333223344444443
No 402
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.65 E-value=0.039 Score=54.16 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+++|.|+.|+|||||++.++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4467999999999999999999986
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.63 E-value=0.034 Score=51.47 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 404
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.62 E-value=0.26 Score=50.49 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=32.3
Q ss_pred EEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEEeCCcC-CHHHHHHHHHH
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWICISEDF-GERQIMTKIIK 79 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (680)
-+.|.|.+|+|||+|+.++++ ...+ +-+.++|+-+.+.. ...++.+.+..
T Consensus 155 r~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 588999999999999999987 3322 22445666555432 23344444443
No 405
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.61 E-value=0.027 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|+|.|++|+||||+++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.60 E-value=0.041 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+.+|+|.|++|+||||+|+.++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999873
No 407
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.59 E-value=0.052 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...+.+++.|.+|+|||||+.+++..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999873
No 408
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.54 E-value=0.099 Score=62.53 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=60.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCC-----CCCcCHHHHHHHHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQN-----QGDLDIEQLQRILRV 100 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 100 (680)
-++|-|+|+.|+||||||.+++. ...+.-...+|++..+..++.- ++.++.+. ..+..-++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 37899999999999999999987 4455556788998887776653 66666543 234445667777777
Q ss_pred HhC-CceEEEEEecC
Q 042863 101 CLN-GKRYLLVMDDV 114 (680)
Q Consensus 101 ~l~-~~~~llvlD~~ 114 (680)
+++ +..-+||+|-|
T Consensus 1504 ~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHcCCCCEEEEccH
Confidence 664 44569999988
No 409
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.52 E-value=0.035 Score=50.78 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+|++.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999987
No 410
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.52 E-value=0.036 Score=51.27 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.43 E-value=0.071 Score=51.99 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...++++.|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 412
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.43 E-value=0.037 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|+.|+||||+++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.39 E-value=0.081 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
....|+|.|++|+||||+++.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999883
No 414
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.33 E-value=0.07 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+++|.|+.|+|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
No 415
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.32 E-value=0.092 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+|+|.|+.|+|||||++.++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.30 E-value=0.05 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...|+|.|++|+||||+++.++..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 417
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.29 E-value=0.077 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...+.++||+|.|||.+|..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999987
No 418
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.24 E-value=0.048 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
....+|+|.|+.|+||||+++.++.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 419
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.24 E-value=0.044 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+|+|.|++|+||||+++.++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.20 E-value=0.05 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.18 E-value=0.054 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+++++|.||.|+|||+||.+++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3467899999999999999999987
No 422
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.18 E-value=0.05 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.|+|.|++|+|||+||.+++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999987
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.16 E-value=0.05 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++|+|.||.|+|||+||.+++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 424
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.14 E-value=0.051 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.|+|.|+.|+||||||..++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 425
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.12 E-value=0.047 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999998875
No 426
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.10 E-value=0.1 Score=49.98 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=30.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG 69 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (680)
++|+|.|.||+||||+|..++. .....-..++.+++....+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEECTTSC
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCCCCCC
Confidence 4677789999999999999987 4444444688888775443
No 427
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.08 E-value=0.041 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHhhcch
Q 042863 28 VIPIVGIGGLGKTALAQLVFNDQ 50 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~~ 50 (680)
+++|.|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998743
No 428
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.08 E-value=0.047 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 429
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.08 E-value=0.045 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+++|.|++|+||||+++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 430
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.02 E-value=0.034 Score=60.05 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.|.++|++|+|||+||+.++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 6999999999999999999873
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.98 E-value=0.032 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=15.9
Q ss_pred EEEEEEcCCCChHHHHHHHhh-c
Q 042863 27 SVIPIVGIGGLGKTALAQLVF-N 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~-~ 48 (680)
.+++|.|+.|+|||||++.++ .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 432
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.95 E-value=0.048 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998875
No 433
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.94 E-value=0.061 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.++|+|.|+.|+|||+||.+++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.94 E-value=0.089 Score=50.11 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=54.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCce
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQNQGDLDIEQLQRILRVCLNGKR 106 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (680)
.+++|.|+.|+||||+++.++. .+...+.+.+++.......... .. ..+..+.....+.......+.+.+...+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~---~~-~~~v~q~~~gl~~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFK---HK-KSIVNQREVGEDTKSFADALRAALREDP 99 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCC---CS-SSEEEEEEBTTTBSCHHHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecC---Cc-ceeeeHHHhCCCHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987 3332223444443221000000 00 0000000000000122345555555566
Q ss_pred EEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEecCchHH
Q 042863 107 YLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTTRSNKV 147 (680)
Q Consensus 107 ~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTsR~~~~ 147 (680)
-++++|+.. +......+.... ..|..|++|+-+...
T Consensus 100 ~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 100 DVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp SEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred CEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 788899995 444443333322 225557777765443
No 435
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.89 E-value=0.055 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.+|+|.|++|+||||+|+.++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.88 E-value=0.044 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 437
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.85 E-value=0.12 Score=51.25 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=33.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG 69 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (680)
..+++++.|.||+||||+|..++. .....-..++-+++....+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCC
Confidence 467889999999999999999887 4444445688888775443
No 438
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.83 E-value=0.14 Score=48.88 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=27.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICIS 65 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 65 (680)
....++++.|.||+||||++..++... . .-..+.-++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l--~-~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL--E-DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH--T-TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH--H-CCCeEEEEeCC
Confidence 456789999999999999999998732 2 22235555543
No 439
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.82 E-value=0.027 Score=52.00 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+|+|.|+.|+||||+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.81 E-value=0.098 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999873
No 441
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.81 E-value=0.091 Score=49.69 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=28.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
.++.|.|++|+|||++|.+++.+ ........++|++...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC
Confidence 58999999999999999998763 1223334577776653
No 442
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.76 E-value=0.17 Score=49.97 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHH
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQ 72 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (680)
.++++..|.||+||||+|..++. ..+..-..++-++.....+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~--~lA~~G~rVLlvD~D~~~~l~~ 58 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATAL--WMARSGKKTLVISTDPAHSLSD 58 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEECCSSCCHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHH--HHHHCCCcEEEEeCCCCcCHHH
Confidence 67888899999999999999987 4445555688888776554443
No 443
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.75 E-value=0.058 Score=53.12 Aligned_cols=22 Identities=41% Similarity=0.373 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
++|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 6899999999999999999987
No 444
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.73 E-value=0.085 Score=54.26 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISE 66 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 66 (680)
+.+++|.++|++|+||||++..++... ...-..+..+++..
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l--~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYI--QKRGLKPALIAADT 137 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHH--HHHHCCEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeccc
Confidence 346789999999999999999998743 33223466666543
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.71 E-value=0.057 Score=50.63 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
...|++.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.70 E-value=0.056 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 447
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.70 E-value=0.12 Score=51.40 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=32.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhh--hcCCcEEEEEeCCcC
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVE--EHFELKIWICISEDF 68 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~~~~~~~~ 68 (680)
...+++++.|.||+||||+|..++. ... ..-..++-++.....
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCC
Confidence 3458999999999999999999987 444 444567788877543
No 448
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.69 E-value=0.47 Score=52.91 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.+.+...+.. ...++|.|+.|.|||+++..++.
T Consensus 97 ~q~~~i~~~l~~--------~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 97 AQRDEFLKLYQN--------NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GGHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--------CCeEEEECCCCCCHHHHHHHHHH
Confidence 344556666644 13799999999999997776654
No 449
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.69 E-value=0.69 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+.++|.|++|.||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999988776
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.69 E-value=0.059 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..+.+|+|.|++|+||||+|++++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 451
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.68 E-value=0.055 Score=49.95 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 452
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.67 E-value=0.13 Score=50.04 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=30.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG 69 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (680)
++|+|.|.||+||||+|..++. .....-..++.+++....+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~--~La~~G~rVlliD~D~q~~ 43 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEECSSSC
T ss_pred eEEEEeCCCcCcHHHHHHHHHH--HHHHCCCeEEEEecCCCCC
Confidence 5677789999999999999987 4444334588888776443
No 453
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.65 E-value=0.14 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.++++|.|+.|+|||||+..++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999873
No 454
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.62 E-value=0.059 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
No 455
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.60 E-value=0.039 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+.++|+|+.|+|||||++.++.-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 456
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.60 E-value=0.061 Score=50.47 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=35.3
Q ss_pred CcCHHHHHH-HHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcC---CCCCCCEEEEecCchHH
Q 042863 88 DLDIEQLQR-ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLS---GGAKGSKILVTTRSNKV 147 (680)
Q Consensus 88 ~~~~~~~~~-~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~---~~~~~~~iiiTsR~~~~ 147 (680)
..+-.+.++ .+.+.+-.++-++++|+-.. -|+.....+...+. ....+..||++|-+...
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 344444443 34445555667889998754 45555566666663 22336668888876543
No 457
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.60 E-value=0.052 Score=53.89 Aligned_cols=21 Identities=29% Similarity=0.165 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
-+.|+|++|+|||+|+.++++
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHH
Confidence 578999999999999999988
No 458
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.58 E-value=0.24 Score=50.56 Aligned_cols=104 Identities=16% Similarity=0.089 Sum_probs=54.9
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHHHHHHHHHHHhcCC---CCCCcCHHHHHHHHH
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGERQIMTKIIKSITGQ---NQGDLDIEQLQRILR 99 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~ 99 (680)
....++..|.|+||.|||+++.+.+.. .....+.-. .+...++.+++... ..........-..+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT-----~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPG-----RQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESC-----HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCC-----HHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 456789999999999999999888752 122222211 23334444444321 111111111222222
Q ss_pred HHhCCc---eEEEEEecCCCCChhHHHHHHHhcCCCCCCCEEEEec
Q 042863 100 VCLNGK---RYLLVMDDVWNEDPKVWDKLKSLLSGGAKGSKILVTT 142 (680)
Q Consensus 100 ~~l~~~---~~llvlD~~~~~~~~~~~~l~~~l~~~~~~~~iiiTs 142 (680)
+..... --++|+|++.-.+...+..+....+. .++|+.-
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~----~~vilvG 267 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLC----DIAYVYG 267 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTC----SEEEEEE
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCC----CEEEEec
Confidence 211111 34899999976666666665544322 4555543
No 459
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.57 E-value=0.046 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..|+|.|++|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 460
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.56 E-value=0.18 Score=42.11 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=23.7
Q ss_pred EEEeCCCCcc--cccccccCcCCcceeccccccCCCccChhhcCCCCCcEEecCCc
Q 042863 411 VLNLSGSAIE--ALPKEIGNLKHMRYLDLSRNYKIKKLPNAICELQSLQTLNLEEC 464 (680)
Q Consensus 411 ~L~L~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 464 (680)
.++.+++.++ .+|..+. ++|++|+|++|.+...-+..+..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4455555555 5543321 24555555555332222223344555555555544
No 461
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.53 E-value=0.061 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 462
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.53 E-value=0.061 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHhhc
Q 042863 28 VIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~ 48 (680)
+|+|.|+.|+||||+++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.53 E-value=0.078 Score=46.44 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
..|++.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999863
No 464
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.46 E-value=0.065 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.45 E-value=0.037 Score=53.76 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcC
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDF 68 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (680)
...+|+|.|+.|+||||+|+.++. .....-..+..++.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~--~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ--IFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH--HHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeeEeecchhh
Confidence 346899999999999999999987 332211124456654433
No 466
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.44 E-value=0.064 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999986
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.43 E-value=0.59 Score=50.27 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=67.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhcchhhhhc--C--CcEEEEEeC--C--cCCH--------------HHHHHHHHHHhcCC
Q 042863 27 SVIPIVGIGGLGKTALAQLVFNDQRVEEH--F--ELKIWICIS--E--DFGE--------------RQIMTKIIKSITGQ 84 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--~--~~~~~~~~~--~--~~~~--------------~~~~~~~~~~l~~~ 84 (680)
.+++|.|+.|+|||||++.++.-...... . ..+.++.-. . ..+. .....+++..++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 46899999999999999999763221111 0 012233110 0 0011 12223344444422
Q ss_pred C-----CCCcCHHHHH-HHHHHHhCCceEEEEEecCCC-CChhHHHHHHHhcCCC--CCCCEEEEecCchHHHHh
Q 042863 85 N-----QGDLDIEQLQ-RILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSLLSGG--AKGSKILVTTRSNKVASV 150 (680)
Q Consensus 85 ~-----~~~~~~~~~~-~~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~l~~~--~~~~~iiiTsR~~~~~~~ 150 (680)
. ....+-.+.+ -.+.+++...+-++++|+-.. -|......+...+... ..|..||++|-+......
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 2 2334555544 355667778888999998754 3554445554444432 125557777777655443
No 468
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.42 E-value=0.055 Score=49.73 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999876
No 469
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.42 E-value=0.065 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 470
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.39 E-value=0.064 Score=48.02 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHhhcc
Q 042863 28 VIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 28 ~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
-|+|.|++|+|||||++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 471
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.38 E-value=0.066 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999876
No 472
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.34 E-value=0.17 Score=50.53 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED 67 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 67 (680)
...+++++.|.||+||||+|..++. ..+..-..++-+++...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~--~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGV--YLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHH--HHHHSSCCEEEEECCTT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCCC
Confidence 4567888889999999999999887 44444456888887654
No 473
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.32 E-value=0.074 Score=50.14 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 474
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.30 E-value=0.24 Score=47.40 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcC-CCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc
Q 042863 6 KDREKIIEALMQTSSGESETVSVIPIVGI-GGLGKTALAQLVFNDQRVEEHFELKIWICISED 67 (680)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~-~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 67 (680)
+.++.+...+.... .+...++|.|.|. ||+||||+|..++. .....-..++.+++...
T Consensus 64 Ea~r~lrt~l~~~~--~~~~~kvI~vts~kgG~GKTt~a~nLA~--~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 64 EKFRGIRSNIMFAN--PDSAVQSIVITSEAPGAGKSTIAANLAV--AYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp HHHHHHHHHHHHSS--TTCCCCEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCSS
T ss_pred HHHHHHHHHHHhhc--cCCCCeEEEEECCCCCCcHHHHHHHHHH--HHHhCCCeEEEEeCCCC
Confidence 45666666665432 2344578888865 89999999999987 44444456888887643
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.28 E-value=0.2 Score=46.70 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcchhhhh-cCCcEEEEE
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFNDQRVEE-HFELKIWIC 63 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~ 63 (680)
...|++.|+.|+||||+++.++. .... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH--HHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCeeeeec
Confidence 36899999999999999999988 4333 344344443
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.28 E-value=0.52 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..++|+|+.|+|||||++.++.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998875
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.26 E-value=0.18 Score=46.42 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 24 ETVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 24 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.....|++.|+.|+||||+++.+++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999883
No 478
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.23 E-value=0.072 Score=50.32 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999876
No 479
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.22 E-value=0.072 Score=49.66 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=35.4
Q ss_pred CcCHHHHHH-HHHHHhCCceEEEEEecCCC-CChhHHHHHHHh-cCCCCCCCEEEEecCchHHH
Q 042863 88 DLDIEQLQR-ILRVCLNGKRYLLVMDDVWN-EDPKVWDKLKSL-LSGGAKGSKILVTTRSNKVA 148 (680)
Q Consensus 88 ~~~~~~~~~-~~~~~l~~~~~llvlD~~~~-~~~~~~~~l~~~-l~~~~~~~~iiiTsR~~~~~ 148 (680)
..+-.+.++ .+.+.+-.++-++++|+-.. -|+.....+... +.....+..||++|-+....
T Consensus 130 ~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 344444433 44455556667888998754 455555666664 33333356678888776544
No 480
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.19 E-value=0.074 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 481
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.17 E-value=0.073 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 482
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.17 E-value=0.09 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
.-.++|.|++|+|||||++.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 483
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.16 E-value=0.073 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.1
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHhhc
Q 042863 23 SETVSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 23 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
......|+|.|+.|+||||+++.++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999999886
No 484
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.16 E-value=0.074 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999886
No 485
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.14 E-value=0.075 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 486
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.13 E-value=0.17 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=18.4
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...|++.|+.|+||||+++.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999883
No 487
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.09 E-value=0.2 Score=50.73 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=33.2
Q ss_pred CCCcEEEEEE-cCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCC
Q 042863 23 SETVSVIPIV-GIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFG 69 (680)
Q Consensus 23 ~~~~~~v~i~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (680)
+...++|+|+ |.||+||||+|..++. ..+..-..++.+++....+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~--~La~~g~rVlliD~D~~~~ 185 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAI--AHANMGKKVFYLNIEQCGT 185 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHH--HHHHHTCCEEEEECCTTCC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEECCCCCC
Confidence 3556888887 5999999999999987 4444444688998774433
No 488
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.07 E-value=0.14 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHhhc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+.++|+|++|+|||||++.++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.02 E-value=0.13 Score=45.46 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCc
Q 042863 29 IPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISED 67 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 67 (680)
+.|.|.+|+|||++|.+++. . . ..++|+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~--~-~---~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG--D-A---PQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC--S-C---SSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHh--c-C---CCeEEEecCCC
Confidence 78999999999999999987 3 1 23666665443
No 490
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.96 E-value=0.15 Score=48.26 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=30.6
Q ss_pred EEEEcCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCHH
Q 042863 29 IPIVGIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGER 71 (680)
Q Consensus 29 v~i~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (680)
|+|.|.||+||||+|..++. .....-..++-+++....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcChH
Confidence 55599999999999999988 444444568888877654443
No 491
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.95 E-value=0.08 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 492
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.95 E-value=0.079 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.691 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999999876
No 493
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.95 E-value=0.078 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHhhcc
Q 042863 26 VSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 26 ~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
...|+|.|++|+|||||++.++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.93 E-value=0.12 Score=46.27 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHhhcc
Q 042863 25 TVSVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 25 ~~~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
....|++.|.+|+|||||+..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999863
No 495
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.92 E-value=0.08 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999886
No 496
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.87 E-value=0.083 Score=50.67 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 497
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.83 E-value=0.084 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
.+++|.|+.|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999875
No 498
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.78 E-value=0.096 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhhcc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFND 49 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~~ 49 (680)
+.|++.|.+|+|||||+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 499
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.70 E-value=0.19 Score=45.80 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=30.3
Q ss_pred EEEEEE-cCCCChHHHHHHHhhcchhhhhcCCcEEEEEeCCcCCH
Q 042863 27 SVIPIV-GIGGLGKTALAQLVFNDQRVEEHFELKIWICISEDFGE 70 (680)
Q Consensus 27 ~~v~i~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (680)
++|.|+ +.||+||||+|..++. .....-..++.+++....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCCH
Confidence 356666 7899999999999988 44444446888887754433
No 500
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.65 E-value=0.09 Score=51.07 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhhc
Q 042863 27 SVIPIVGIGGLGKTALAQLVFN 48 (680)
Q Consensus 27 ~~v~i~G~~GiGKTtLa~~~~~ 48 (680)
..++|+|+.|+|||||++.++.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4899999999999999999986
Done!