Query 042869
Match_columns 707
No_of_seqs 335 out of 3624
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-74 8.1E-79 635.7 28.2 439 1-443 187-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.7E-61 1.2E-65 562.0 41.3 623 1-700 215-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-38 2.8E-43 321.0 12.3 249 1-253 27-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 9.2E-24 2E-28 249.2 21.1 198 319-529 117-319 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.3E-23 1.4E-27 242.1 20.4 347 319-697 163-536 (968)
6 PLN03210 Resistant to P. syrin 99.9 9.4E-21 2E-25 223.3 21.1 315 340-702 556-887 (1153)
7 KOG4194 Membrane glycoprotein 99.8 1.3E-21 2.9E-26 195.7 7.0 319 318-658 100-427 (873)
8 KOG0444 Cytoskeletal regulator 99.8 1.7E-22 3.7E-27 203.3 -2.8 338 318-698 30-376 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 2.6E-22 5.6E-27 192.1 -4.4 223 320-545 68-302 (565)
10 KOG0444 Cytoskeletal regulator 99.8 4.3E-22 9.4E-27 200.4 -3.7 321 317-664 52-379 (1255)
11 KOG4194 Membrane glycoprotein 99.8 1.4E-20 3.1E-25 188.3 4.2 339 318-695 76-427 (873)
12 KOG0472 Leucine-rich repeat pr 99.7 2E-17 4.2E-22 158.9 3.1 294 314-658 200-539 (565)
13 KOG0618 Serine/threonine phosp 99.7 4.8E-18 1.1E-22 179.7 -2.6 78 322-400 47-125 (1081)
14 KOG0618 Serine/threonine phosp 99.6 1.6E-17 3.4E-22 175.8 -3.7 364 322-699 23-466 (1081)
15 KOG0617 Ras suppressor protein 99.6 2.8E-17 6.1E-22 139.3 -3.9 166 334-515 25-193 (264)
16 KOG0617 Ras suppressor protein 99.6 6.6E-17 1.4E-21 137.1 -4.0 157 313-472 26-186 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 2.5E-13 5.4E-18 149.0 14.5 254 323-659 204-457 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 2.6E-13 5.7E-18 149.8 10.0 224 367-658 200-426 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4.2E-17 142.1 14.9 248 310-637 213-460 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 1.6E-12 3.4E-17 143.7 10.8 175 323-528 181-356 (754)
21 KOG4658 Apoptotic ATPase [Sign 99.3 6.2E-12 1.3E-16 141.3 7.7 320 333-704 514-849 (889)
22 cd00116 LRR_RI Leucine-rich re 99.2 1.8E-11 3.8E-16 125.8 4.6 91 563-658 192-289 (319)
23 KOG4237 Extracellular matrix p 99.1 1.4E-11 3.1E-16 119.0 1.5 143 348-506 52-199 (498)
24 KOG4237 Extracellular matrix p 99.1 3.2E-12 7E-17 123.4 -3.5 277 342-655 67-354 (498)
25 cd00116 LRR_RI Leucine-rich re 99.1 3.5E-11 7.5E-16 123.6 3.6 91 562-656 219-316 (319)
26 PRK04841 transcriptional regul 99.0 4.2E-09 9E-14 124.3 17.9 264 1-298 40-330 (903)
27 KOG0532 Leucine-rich repeat (L 99.0 2.7E-11 5.9E-16 122.5 -1.0 185 319-521 74-260 (722)
28 PF14580 LRR_9: Leucine-rich r 99.0 7.4E-10 1.6E-14 99.5 6.4 129 363-502 16-147 (175)
29 KOG1259 Nischarin, modulator o 99.0 1.4E-10 3E-15 108.0 0.5 134 365-512 283-416 (490)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 98.0 6.6 100 322-423 21-125 (175)
31 KOG0532 Leucine-rich repeat (L 98.9 4.7E-11 1E-15 120.8 -4.2 190 324-531 54-247 (722)
32 TIGR03015 pepcterm_ATPase puta 98.9 1.1E-07 2.4E-12 94.7 18.7 187 1-191 51-266 (269)
33 PF05729 NACHT: NACHT domain 98.8 1.4E-08 3E-13 93.1 9.6 135 2-142 9-163 (166)
34 COG2909 MalT ATP-dependent tra 98.8 9.4E-08 2E-12 102.6 16.9 261 2-299 46-337 (894)
35 KOG1259 Nischarin, modulator o 98.8 5.9E-10 1.3E-14 103.9 -0.8 129 316-446 280-411 (490)
36 COG4886 Leucine-rich repeat (L 98.8 4E-09 8.6E-14 111.5 5.4 190 325-531 98-290 (394)
37 KOG3207 Beta-tubulin folding c 98.8 1.6E-09 3.5E-14 106.6 1.1 207 317-529 118-337 (505)
38 KOG3207 Beta-tubulin folding c 98.7 3.3E-09 7.2E-14 104.4 1.8 107 363-469 118-232 (505)
39 KOG4341 F-box protein containi 98.7 2.7E-09 5.9E-14 104.4 -1.5 83 367-449 139-231 (483)
40 COG4886 Leucine-rich repeat (L 98.6 5.5E-08 1.2E-12 102.9 5.0 177 320-513 116-295 (394)
41 PRK00411 cdc6 cell division co 98.4 1.1E-05 2.3E-10 85.3 18.5 190 1-191 63-282 (394)
42 PF13855 LRR_8: Leucine rich r 98.4 3.4E-07 7.3E-12 67.4 4.3 59 342-400 1-60 (61)
43 PLN03150 hypothetical protein; 98.4 7.1E-07 1.5E-11 98.9 8.5 103 368-470 420-526 (623)
44 KOG2120 SCF ubiquitin ligase, 98.3 6.7E-08 1.4E-12 90.5 -1.3 64 562-632 311-374 (419)
45 KOG2120 SCF ubiquitin ligase, 98.3 5.4E-08 1.2E-12 91.1 -2.4 89 563-659 285-375 (419)
46 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 96.4 8.5 109 343-451 419-532 (623)
47 KOG4341 F-box protein containi 98.3 5.9E-08 1.3E-12 95.3 -2.8 267 389-698 138-415 (483)
48 PF13855 LRR_8: Leucine rich r 98.3 9.3E-07 2E-11 65.0 3.9 58 366-423 1-61 (61)
49 KOG1909 Ran GTPase-activating 98.2 1.7E-07 3.7E-12 90.1 -0.7 13 646-658 297-309 (382)
50 cd01128 rho_factor Transcripti 98.2 3.3E-06 7.2E-11 81.2 7.3 84 1-85 24-115 (249)
51 KOG1909 Ran GTPase-activating 98.2 4.5E-07 9.8E-12 87.2 1.3 70 562-634 239-310 (382)
52 KOG1859 Leucine-rich repeat pr 98.2 3.6E-08 7.8E-13 103.1 -7.5 174 316-508 105-292 (1096)
53 PRK09376 rho transcription ter 98.1 6.8E-06 1.5E-10 82.4 7.6 82 2-84 178-267 (416)
54 KOG0531 Protein phosphatase 1, 98.1 4.4E-07 9.5E-12 96.1 -1.4 171 338-527 91-264 (414)
55 PF01637 Arch_ATPase: Archaeal 98.1 1.7E-05 3.6E-10 77.2 9.2 167 2-171 29-233 (234)
56 PRK06893 DNA replication initi 98.0 1.4E-05 2.9E-10 76.9 8.0 141 2-171 48-202 (229)
57 PF13401 AAA_22: AAA domain; P 98.0 1.1E-05 2.4E-10 70.3 6.7 107 2-110 13-125 (131)
58 COG2256 MGS1 ATPase related to 98.0 7.7E-05 1.7E-09 73.9 12.8 138 2-166 57-206 (436)
59 PF13173 AAA_14: AAA domain 98.0 9.4E-06 2E-10 70.2 5.9 112 2-134 11-127 (128)
60 PF12799 LRR_4: Leucine Rich r 98.0 7E-06 1.5E-10 55.0 3.8 37 367-403 2-38 (44)
61 TIGR02928 orc1/cdc6 family rep 98.0 0.00021 4.6E-09 74.6 16.2 168 1-168 48-242 (365)
62 KOG3665 ZYG-1-like serine/thre 97.9 3.1E-06 6.6E-11 93.5 1.4 148 318-466 120-282 (699)
63 KOG2982 Uncharacterized conser 97.9 3.2E-06 7E-11 79.5 1.1 87 562-655 197-287 (418)
64 PRK00080 ruvB Holliday junctio 97.9 0.00021 4.5E-09 73.1 14.1 95 73-174 129-224 (328)
65 PRK13342 recombination factor 97.8 0.00028 6.1E-09 74.5 13.1 147 2-175 45-199 (413)
66 TIGR00635 ruvB Holliday juncti 97.8 0.00021 4.6E-09 72.5 11.7 158 1-174 38-203 (305)
67 KOG3665 ZYG-1-like serine/thre 97.8 1.7E-05 3.7E-10 87.7 3.9 129 342-471 122-262 (699)
68 COG3903 Predicted ATPase [Gene 97.7 2.6E-05 5.7E-10 77.7 4.4 226 2-239 23-258 (414)
69 TIGR00767 rho transcription te 97.7 8.4E-05 1.8E-09 75.1 8.0 82 2-84 177-266 (415)
70 PRK05564 DNA polymerase III su 97.7 0.00023 5E-09 72.2 11.4 147 2-171 35-189 (313)
71 KOG2982 Uncharacterized conser 97.7 1E-05 2.2E-10 76.3 0.6 22 589-610 244-265 (418)
72 KOG0531 Protein phosphatase 1, 97.7 6.5E-06 1.4E-10 87.2 -1.2 129 340-472 70-199 (414)
73 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.00015 3.2E-09 70.1 8.3 144 2-174 47-203 (226)
74 PF12799 LRR_4: Leucine Rich r 97.6 7.1E-05 1.5E-09 50.2 3.8 37 390-426 2-39 (44)
75 PRK14087 dnaA chromosomal repl 97.6 0.0021 4.6E-08 68.1 16.3 160 2-176 150-323 (450)
76 KOG1859 Leucine-rich repeat pr 97.6 2.9E-06 6.3E-11 89.3 -5.6 126 318-446 162-291 (1096)
77 PRK14961 DNA polymerase III su 97.5 0.0017 3.8E-08 67.1 14.1 97 73-170 119-218 (363)
78 TIGR00678 holB DNA polymerase 97.5 0.00091 2E-08 62.3 10.8 90 72-168 95-187 (188)
79 PTZ00112 origin recognition co 97.4 0.0025 5.4E-08 70.3 14.4 176 1-177 789-987 (1164)
80 PRK06645 DNA polymerase III su 97.4 0.0021 4.5E-08 68.6 13.6 96 72-168 127-225 (507)
81 PRK15386 type III secretion pr 97.4 0.00031 6.7E-09 71.5 7.0 53 341-399 51-104 (426)
82 PRK12402 replication factor C 97.4 0.0015 3.3E-08 67.4 12.1 96 74-170 126-224 (337)
83 KOG1644 U2-associated snRNP A' 97.4 0.0003 6.4E-09 63.0 5.6 101 321-421 43-150 (233)
84 PF00308 Bac_DnaA: Bacterial d 97.4 0.0013 2.8E-08 62.6 10.3 150 2-169 43-205 (219)
85 PLN03025 replication factor C 97.4 0.0011 2.3E-08 67.6 10.1 149 2-167 43-195 (319)
86 PRK15386 type III secretion pr 97.3 0.00065 1.4E-08 69.2 8.0 134 362-527 48-186 (426)
87 PRK14963 DNA polymerase III su 97.3 0.00044 9.5E-09 74.0 7.1 97 72-169 115-214 (504)
88 PRK14949 DNA polymerase III su 97.3 0.0019 4.1E-08 72.1 11.7 100 72-172 118-220 (944)
89 PRK07003 DNA polymerase III su 97.3 0.0027 5.8E-08 69.4 12.6 99 72-171 118-220 (830)
90 PRK08727 hypothetical protein; 97.3 0.0018 3.9E-08 62.4 10.4 138 2-168 50-200 (233)
91 COG1474 CDC6 Cdc6-related prot 97.3 0.008 1.7E-07 61.6 15.3 170 2-172 51-238 (366)
92 TIGR01242 26Sp45 26S proteasom 97.3 0.0062 1.3E-07 63.3 14.6 142 2-166 165-328 (364)
93 PRK14956 DNA polymerase III su 97.2 0.0016 3.4E-08 68.1 10.0 96 72-168 120-218 (484)
94 TIGR02903 spore_lon_C ATP-depe 97.2 0.0046 1E-07 68.3 14.1 112 61-174 281-397 (615)
95 PRK12323 DNA polymerase III su 97.2 0.0024 5.3E-08 68.7 10.9 100 72-172 123-225 (700)
96 PRK14960 DNA polymerase III su 97.2 0.0037 8E-08 67.6 11.7 98 72-170 117-217 (702)
97 KOG4579 Leucine-rich repeat (L 97.1 4.9E-05 1.1E-09 63.3 -1.9 87 343-429 54-141 (177)
98 PRK05642 DNA replication initi 97.1 0.0024 5.2E-08 61.6 9.3 138 2-168 54-204 (234)
99 PF14516 AAA_35: AAA-like doma 97.1 0.012 2.6E-07 60.0 14.8 170 3-179 41-246 (331)
100 KOG1644 U2-associated snRNP A' 97.1 0.00081 1.7E-08 60.3 5.2 77 345-423 45-125 (233)
101 cd00009 AAA The AAA+ (ATPases 97.1 0.0016 3.5E-08 57.8 7.6 96 2-112 28-131 (151)
102 PRK09087 hypothetical protein; 97.1 0.0021 4.5E-08 61.5 8.4 95 76-171 90-194 (226)
103 PRK13341 recombination factor 97.1 0.0044 9.5E-08 69.3 11.6 92 72-166 108-211 (725)
104 PRK00440 rfc replication facto 97.0 0.0085 1.8E-07 61.3 13.0 95 74-169 103-200 (319)
105 PRK07994 DNA polymerase III su 97.0 0.0053 1.1E-07 67.2 11.5 100 72-172 118-220 (647)
106 KOG4579 Leucine-rich repeat (L 97.0 0.00011 2.4E-09 61.2 -1.0 82 362-443 49-132 (177)
107 PRK08084 DNA replication initi 97.0 0.0037 8.1E-08 60.3 9.3 140 2-170 54-207 (235)
108 PRK14957 DNA polymerase III su 97.0 0.012 2.6E-07 63.4 13.8 100 72-172 118-221 (546)
109 PRK09112 DNA polymerase III su 97.0 0.0078 1.7E-07 61.5 11.9 111 60-173 124-241 (351)
110 PRK14962 DNA polymerase III su 97.0 0.0096 2.1E-07 63.4 12.6 102 72-174 116-221 (472)
111 COG3899 Predicted ATPase [Gene 96.9 0.011 2.4E-07 67.9 13.5 116 119-244 209-332 (849)
112 KOG1947 Leucine rich repeat pr 96.9 0.00061 1.3E-08 74.4 3.3 111 387-507 186-307 (482)
113 PRK14964 DNA polymerase III su 96.9 0.011 2.4E-07 62.7 12.4 95 73-168 116-213 (491)
114 PRK07940 DNA polymerase III su 96.9 0.0088 1.9E-07 62.0 11.4 95 72-172 116-213 (394)
115 PRK14958 DNA polymerase III su 96.9 0.0068 1.5E-07 65.2 10.9 97 72-169 118-217 (509)
116 PF05621 TniB: Bacterial TniB 96.9 0.0098 2.1E-07 58.0 10.8 170 2-171 70-260 (302)
117 PRK05896 DNA polymerase III su 96.9 0.0077 1.7E-07 65.0 11.0 93 74-167 120-215 (605)
118 KOG2028 ATPase related to the 96.8 0.0064 1.4E-07 59.6 9.2 118 2-142 171-294 (554)
119 PRK14086 dnaA chromosomal repl 96.8 0.059 1.3E-06 58.4 17.2 148 2-167 323-483 (617)
120 PRK04195 replication factor C 96.8 0.017 3.7E-07 62.4 13.4 146 2-171 48-201 (482)
121 TIGR02880 cbbX_cfxQ probable R 96.8 0.011 2.4E-07 58.7 10.9 125 2-143 67-209 (284)
122 PRK14951 DNA polymerase III su 96.8 0.014 3.1E-07 63.8 12.2 99 72-171 123-224 (618)
123 PRK07471 DNA polymerase III su 96.7 0.0017 3.7E-08 66.6 5.0 108 60-172 124-238 (365)
124 PRK14955 DNA polymerase III su 96.7 0.0071 1.5E-07 63.4 9.7 96 73-169 127-225 (397)
125 PRK08903 DnaA regulatory inact 96.7 0.008 1.7E-07 57.9 9.3 142 2-176 51-203 (227)
126 PF05496 RuvB_N: Holliday junc 96.7 0.016 3.5E-07 53.8 10.6 74 103-177 152-226 (233)
127 TIGR00362 DnaA chromosomal rep 96.7 0.015 3.3E-07 61.4 12.1 151 2-170 145-308 (405)
128 PRK00149 dnaA chromosomal repl 96.7 0.015 3.2E-07 62.3 11.9 172 2-191 157-349 (450)
129 KOG2123 Uncharacterized conser 96.7 0.00014 3.1E-09 68.1 -3.0 60 341-403 18-77 (388)
130 PRK08691 DNA polymerase III su 96.7 0.013 2.9E-07 64.0 11.2 98 72-170 118-218 (709)
131 KOG2123 Uncharacterized conser 96.7 0.00016 3.4E-09 67.8 -3.0 100 365-465 18-123 (388)
132 PRK05707 DNA polymerase III su 96.7 0.015 3.3E-07 58.8 10.9 95 73-172 106-203 (328)
133 COG5238 RNA1 Ran GTPase-activa 96.6 0.0064 1.4E-07 57.1 7.2 36 364-399 28-68 (388)
134 PRK04132 replication factor C 96.6 0.031 6.6E-07 63.2 13.9 151 2-169 575-728 (846)
135 PRK12422 chromosomal replicati 96.6 0.1 2.2E-06 55.4 17.0 144 2-165 150-306 (445)
136 CHL00181 cbbX CbbX; Provisiona 96.6 0.021 4.5E-07 56.8 11.2 125 2-143 68-210 (287)
137 TIGR02397 dnaX_nterm DNA polym 96.6 0.027 6E-07 58.5 12.8 100 73-173 117-219 (355)
138 PRK14959 DNA polymerase III su 96.6 0.019 4.2E-07 62.3 11.6 104 72-176 118-225 (624)
139 PRK14088 dnaA chromosomal repl 96.6 0.022 4.7E-07 60.5 11.9 172 2-191 139-332 (440)
140 PRK14969 DNA polymerase III su 96.6 0.02 4.3E-07 62.2 11.7 95 72-167 118-215 (527)
141 PRK03992 proteasome-activating 96.6 0.013 2.8E-07 61.2 10.0 141 2-165 174-336 (389)
142 KOG2227 Pre-initiation complex 96.6 0.12 2.7E-06 52.9 16.2 165 2-166 184-362 (529)
143 PRK08116 hypothetical protein; 96.5 0.0051 1.1E-07 60.5 6.2 93 2-110 123-220 (268)
144 PF00004 AAA: ATPase family as 96.5 0.011 2.4E-07 51.3 7.7 63 2-85 7-70 (132)
145 TIGR03689 pup_AAA proteasome A 96.4 0.032 6.9E-07 59.5 12.0 129 2-144 225-380 (512)
146 PRK09111 DNA polymerase III su 96.4 0.034 7.3E-07 61.0 12.4 99 73-172 132-233 (598)
147 PRK12608 transcription termina 96.4 0.018 3.9E-07 58.2 9.5 82 2-84 142-231 (380)
148 PRK11331 5-methylcytosine-spec 96.4 0.0044 9.5E-08 64.1 5.2 42 1-42 202-243 (459)
149 TIGR02881 spore_V_K stage V sp 96.3 0.024 5.2E-07 55.8 9.9 70 74-143 106-192 (261)
150 PRK14950 DNA polymerase III su 96.3 0.024 5.2E-07 62.7 10.8 164 2-172 47-221 (585)
151 PRK14954 DNA polymerase III su 96.3 0.045 9.8E-07 60.1 12.6 95 72-167 126-223 (620)
152 COG5238 RNA1 Ran GTPase-activa 96.3 0.0066 1.4E-07 57.1 5.1 83 341-423 29-132 (388)
153 PHA02544 44 clamp loader, smal 96.3 0.024 5.3E-07 57.8 10.0 116 2-140 52-171 (316)
154 smart00382 AAA ATPases associa 96.2 0.012 2.5E-07 51.7 6.6 82 2-87 11-92 (148)
155 PRK08451 DNA polymerase III su 96.2 0.06 1.3E-06 57.8 12.7 99 73-172 117-218 (535)
156 COG0593 DnaA ATPase involved i 96.2 0.12 2.5E-06 53.3 14.0 172 2-192 122-314 (408)
157 KOG2739 Leucine-rich acidic nu 96.2 0.0028 6.2E-08 59.4 2.3 58 364-421 63-126 (260)
158 PRK06620 hypothetical protein; 96.2 0.021 4.5E-07 54.1 8.3 91 74-166 86-183 (214)
159 COG1373 Predicted ATPase (AAA+ 96.2 0.028 6.1E-07 58.7 9.9 64 73-137 94-162 (398)
160 PRK14948 DNA polymerase III su 96.1 0.075 1.6E-06 58.8 13.2 166 2-173 47-223 (620)
161 PTZ00361 26 proteosome regulat 96.1 0.038 8.1E-07 58.0 10.3 122 2-144 226-369 (438)
162 PRK07764 DNA polymerase III su 96.1 0.076 1.6E-06 60.5 13.4 97 72-169 119-218 (824)
163 KOG2543 Origin recognition com 96.1 0.015 3.2E-07 57.7 6.7 134 2-141 39-192 (438)
164 PRK14952 DNA polymerase III su 96.0 0.075 1.6E-06 58.0 12.6 95 72-167 117-214 (584)
165 KOG2739 Leucine-rich acidic nu 96.0 0.0035 7.5E-08 58.9 2.1 87 317-403 40-130 (260)
166 PTZ00454 26S protease regulato 96.0 0.094 2E-06 54.6 12.8 142 2-166 188-351 (398)
167 PRK14971 DNA polymerase III su 96.0 0.094 2E-06 58.0 13.3 96 73-169 121-219 (614)
168 PRK07133 DNA polymerase III su 96.0 0.087 1.9E-06 58.4 12.8 99 72-171 117-218 (725)
169 COG1222 RPT1 ATP-dependent 26S 95.9 0.11 2.4E-06 51.4 11.8 151 2-177 194-372 (406)
170 PRK14953 DNA polymerase III su 95.9 0.11 2.5E-06 55.6 12.9 100 72-172 118-220 (486)
171 PRK14970 DNA polymerase III su 95.8 0.12 2.6E-06 54.0 12.8 94 73-167 108-204 (367)
172 PRK08118 topology modulation p 95.8 0.0043 9.2E-08 56.2 1.7 28 1-28 9-37 (167)
173 PRK06305 DNA polymerase III su 95.8 0.11 2.5E-06 55.2 12.5 95 72-167 120-217 (451)
174 PF04665 Pox_A32: Poxvirus A32 95.7 0.033 7.1E-07 53.0 7.2 28 2-31 22-49 (241)
175 KOG3864 Uncharacterized conser 95.6 0.0022 4.8E-08 57.6 -0.9 72 589-662 120-191 (221)
176 CHL00176 ftsH cell division pr 95.6 0.15 3.3E-06 56.4 12.9 141 2-165 225-387 (638)
177 cd01133 F1-ATPase_beta F1 ATP 95.5 0.063 1.4E-06 52.2 8.4 81 2-84 78-174 (274)
178 KOG0989 Replication factor C, 95.4 0.044 9.6E-07 52.8 6.8 150 2-167 66-225 (346)
179 TIGR01241 FtsH_fam ATP-depende 95.3 0.11 2.4E-06 56.5 10.7 141 2-165 97-259 (495)
180 PRK06647 DNA polymerase III su 95.2 0.25 5.4E-06 54.0 12.9 99 72-171 118-219 (563)
181 PF05673 DUF815: Protein of un 95.2 0.36 7.9E-06 45.7 12.1 86 2-114 61-154 (249)
182 PF00560 LRR_1: Leucine Rich R 95.1 0.0091 2E-07 33.0 0.9 21 367-387 1-21 (22)
183 KOG3864 Uncharacterized conser 95.1 0.004 8.7E-08 56.0 -0.9 70 618-699 122-191 (221)
184 PRK06871 DNA polymerase III su 95.1 0.22 4.9E-06 50.1 11.1 105 59-169 89-200 (325)
185 KOG1947 Leucine rich repeat pr 95.1 0.0099 2.1E-07 64.8 1.7 102 558-662 208-310 (482)
186 COG3267 ExeA Type II secretory 95.0 0.51 1.1E-05 44.7 12.3 170 2-175 60-248 (269)
187 CHL00195 ycf46 Ycf46; Provisio 95.0 0.11 2.4E-06 55.5 9.1 144 2-166 268-429 (489)
188 PF13191 AAA_16: AAA ATPase do 94.9 0.06 1.3E-06 49.8 6.4 20 1-20 32-51 (185)
189 PRK06090 DNA polymerase III su 94.9 0.81 1.7E-05 46.0 14.3 109 72-192 107-218 (319)
190 PRK08181 transposase; Validate 94.8 0.031 6.8E-07 54.6 4.2 65 2-85 115-179 (269)
191 PRK14965 DNA polymerase III su 94.8 0.18 3.9E-06 55.5 10.5 93 73-166 119-214 (576)
192 PRK07399 DNA polymerase III su 94.8 0.4 8.7E-06 48.3 12.2 108 60-172 107-221 (314)
193 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.2E-07 32.9 0.4 20 412-431 1-20 (22)
194 PRK05563 DNA polymerase III su 94.6 0.38 8.1E-06 52.8 12.4 97 72-169 118-217 (559)
195 PRK08769 DNA polymerase III su 94.6 0.44 9.6E-06 47.9 11.8 94 72-172 112-208 (319)
196 TIGR02237 recomb_radB DNA repa 94.6 0.15 3.3E-06 48.3 8.2 38 2-42 21-58 (209)
197 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.26 5.7E-06 43.7 8.5 49 64-112 86-139 (159)
198 PTZ00202 tuzin; Provisional 94.3 0.16 3.6E-06 52.1 8.0 130 1-141 294-433 (550)
199 KOG0731 AAA+-type ATPase conta 94.2 0.78 1.7E-05 50.9 13.4 145 2-168 353-520 (774)
200 PF01695 IstB_IS21: IstB-like 94.2 0.042 9.2E-07 50.3 3.3 65 2-85 56-120 (178)
201 PRK08939 primosomal protein Dn 94.1 0.066 1.4E-06 53.6 4.9 90 2-110 165-260 (306)
202 TIGR01243 CDC48 AAA family ATP 94.1 0.35 7.5E-06 55.5 11.2 142 2-166 496-657 (733)
203 PRK12377 putative replication 94.0 0.13 2.7E-06 49.8 6.3 66 2-85 110-175 (248)
204 cd01123 Rad51_DMC1_radA Rad51_ 94.0 0.29 6.2E-06 47.4 9.0 82 2-84 28-126 (235)
205 PF13306 LRR_5: Leucine rich r 94.0 0.22 4.7E-06 42.8 7.3 55 341-397 11-66 (129)
206 PRK05541 adenylylsulfate kinas 93.9 0.19 4E-06 46.2 7.0 27 1-29 15-41 (176)
207 PRK10536 hypothetical protein; 93.9 0.26 5.6E-06 47.3 8.0 39 74-113 177-215 (262)
208 COG2812 DnaX DNA polymerase II 93.9 0.45 9.8E-06 50.7 10.5 156 2-166 47-214 (515)
209 PF13306 LRR_5: Leucine rich r 93.8 0.21 4.5E-06 43.0 6.9 106 357-468 3-112 (129)
210 PHA00729 NTP-binding motif con 93.7 0.2 4.3E-06 47.2 6.8 22 121-142 119-140 (226)
211 PF08423 Rad51: Rad51; InterP 93.7 0.47 1E-05 46.3 9.7 47 2-49 47-97 (256)
212 PRK07952 DNA replication prote 93.7 0.2 4.4E-06 48.2 7.1 67 2-85 108-174 (244)
213 PF13504 LRR_7: Leucine rich r 93.6 0.037 7.9E-07 28.3 1.0 17 684-701 1-17 (17)
214 TIGR03345 VI_ClpV1 type VI sec 93.6 0.57 1.2E-05 54.2 11.7 148 2-165 217-389 (852)
215 KOG0735 AAA+-type ATPase [Post 93.6 0.41 8.9E-06 51.8 9.5 63 2-83 440-504 (952)
216 TIGR02238 recomb_DMC1 meiotic 93.6 0.31 6.7E-06 49.0 8.5 82 2-84 105-202 (313)
217 PRK09183 transposase/IS protei 93.5 0.11 2.4E-06 50.8 5.1 17 2-18 111-127 (259)
218 PRK06526 transposase; Provisio 93.4 0.042 9.2E-07 53.4 2.0 65 2-85 107-171 (254)
219 PF13481 AAA_25: AAA domain; P 93.4 0.2 4.4E-06 46.7 6.5 33 2-34 41-81 (193)
220 PRK08058 DNA polymerase III su 93.4 0.71 1.5E-05 47.1 10.8 69 73-141 110-181 (329)
221 TIGR02639 ClpA ATP-dependent C 93.3 0.44 9.6E-06 54.5 10.1 126 2-142 212-358 (731)
222 PRK06964 DNA polymerase III su 93.2 0.96 2.1E-05 46.0 11.4 105 59-172 114-225 (342)
223 PRK07993 DNA polymerase III su 93.2 0.21 4.7E-06 50.7 6.7 106 59-170 90-202 (334)
224 PRK09361 radB DNA repair and r 93.1 0.38 8.1E-06 46.2 8.1 36 2-40 32-67 (225)
225 cd01393 recA_like RecA is a b 93.1 0.44 9.5E-06 45.8 8.6 40 2-41 28-71 (226)
226 PRK07261 topology modulation p 93.1 0.16 3.4E-06 46.3 5.1 28 1-28 8-36 (171)
227 KOG0741 AAA+-type ATPase [Post 93.0 1.9 4E-05 45.3 12.8 137 2-162 547-704 (744)
228 PF13504 LRR_7: Leucine rich r 93.0 0.058 1.3E-06 27.6 1.2 15 412-426 2-16 (17)
229 CHL00095 clpC Clp protease ATP 93.0 0.64 1.4E-05 53.9 10.9 126 2-141 209-353 (821)
230 cd01135 V_A-ATPase_B V/A-type 92.9 0.48 1E-05 46.0 8.2 83 2-84 78-177 (276)
231 TIGR02640 gas_vesic_GvpN gas v 92.8 0.95 2.1E-05 44.5 10.4 36 2-42 30-65 (262)
232 KOG1969 DNA replication checkp 92.7 0.23 5.1E-06 53.8 6.3 65 2-85 335-399 (877)
233 PLN03187 meiotic recombination 92.4 0.62 1.3E-05 47.3 8.7 49 2-51 135-187 (344)
234 PF13177 DNA_pol3_delta2: DNA 92.4 0.66 1.4E-05 41.7 8.0 41 73-113 102-144 (162)
235 PRK04296 thymidine kinase; Pro 92.3 0.11 2.5E-06 48.2 3.1 104 2-113 11-118 (190)
236 TIGR03305 alt_F1F0_F1_bet alte 92.2 0.51 1.1E-05 49.5 8.0 82 2-84 147-243 (449)
237 COG2255 RuvB Holliday junction 92.2 3.9 8.4E-05 39.6 12.9 70 106-176 157-227 (332)
238 cd01120 RecA-like_NTPases RecA 92.2 0.7 1.5E-05 41.5 8.2 32 2-35 8-39 (165)
239 KOG0736 Peroxisome assembly fa 92.2 1.4 3E-05 48.4 11.2 63 2-85 714-776 (953)
240 COG1484 DnaC DNA replication p 92.1 0.32 7E-06 47.3 6.1 66 2-85 114-179 (254)
241 PLN03186 DNA repair protein RA 92.1 0.56 1.2E-05 47.7 7.9 49 2-51 132-184 (342)
242 PRK12597 F0F1 ATP synthase sub 92.0 0.57 1.2E-05 49.4 8.0 81 2-83 152-247 (461)
243 PRK06921 hypothetical protein; 91.9 0.53 1.1E-05 46.3 7.4 61 2-82 126-186 (266)
244 TIGR03345 VI_ClpV1 type VI sec 91.9 0.56 1.2E-05 54.3 8.6 76 2-85 605-680 (852)
245 COG2607 Predicted ATPase (AAA+ 91.8 0.5 1.1E-05 44.2 6.5 85 2-113 94-185 (287)
246 PRK09354 recA recombinase A; P 91.7 0.54 1.2E-05 47.6 7.3 76 2-84 69-149 (349)
247 KOG0733 Nuclear AAA ATPase (VC 91.7 2.2 4.7E-05 45.7 11.6 62 2-84 232-293 (802)
248 COG1066 Sms Predicted ATP-depe 91.6 0.42 9.1E-06 48.5 6.2 77 2-84 102-179 (456)
249 TIGR02239 recomb_RAD51 DNA rep 91.6 0.75 1.6E-05 46.4 8.2 48 2-50 105-156 (316)
250 PLN00020 ribulose bisphosphate 91.5 3 6.5E-05 42.3 12.0 19 2-20 157-175 (413)
251 TIGR02012 tigrfam_recA protein 91.5 0.33 7.1E-06 48.7 5.5 76 2-84 64-144 (321)
252 TIGR01243 CDC48 AAA family ATP 91.4 0.91 2E-05 52.1 9.6 143 2-167 221-382 (733)
253 TIGR02236 recomb_radA DNA repa 91.3 1.1 2.4E-05 45.5 9.2 48 2-50 104-155 (310)
254 PRK08699 DNA polymerase III su 91.3 1.1 2.4E-05 45.4 9.1 87 73-168 113-202 (325)
255 COG0470 HolB ATPase involved i 91.2 0.52 1.1E-05 48.2 6.9 93 2-111 33-149 (325)
256 cd00983 recA RecA is a bacter 91.2 0.38 8.2E-06 48.3 5.5 76 2-84 64-144 (325)
257 PRK09280 F0F1 ATP synthase sub 91.1 0.92 2E-05 47.8 8.5 82 2-84 153-249 (463)
258 PRK10733 hflB ATP-dependent me 90.9 1.1 2.4E-05 50.3 9.6 122 2-144 194-337 (644)
259 PF00006 ATP-synt_ab: ATP synt 90.9 0.89 1.9E-05 42.8 7.5 78 2-83 24-115 (215)
260 PRK11034 clpA ATP-dependent Cl 90.9 0.45 9.7E-06 53.9 6.4 127 2-142 216-362 (758)
261 PF13207 AAA_17: AAA domain; P 90.8 0.17 3.7E-06 42.9 2.4 17 1-17 7-23 (121)
262 cd01394 radB RadB. The archaea 90.8 0.95 2.1E-05 43.1 7.8 33 2-36 28-60 (218)
263 PF01583 APS_kinase: Adenylyls 90.7 0.31 6.7E-06 43.0 3.9 28 1-30 10-37 (156)
264 TIGR00602 rad24 checkpoint pro 90.5 0.84 1.8E-05 50.4 7.9 16 2-17 119-134 (637)
265 TIGR01040 V-ATPase_V1_B V-type 90.5 1 2.2E-05 47.1 8.1 83 2-84 150-258 (466)
266 COG4088 Predicted nucleotide k 90.4 0.37 8E-06 43.9 4.1 20 1-20 9-28 (261)
267 TIGR03877 thermo_KaiC_1 KaiC d 90.3 1.4 3.1E-05 42.6 8.6 39 2-44 30-68 (237)
268 PRK08533 flagellar accessory p 90.2 1.6 3.5E-05 41.8 8.8 44 2-50 33-76 (230)
269 KOG0728 26S proteasome regulat 90.2 2.2 4.8E-05 40.0 9.0 120 2-142 190-331 (404)
270 cd01121 Sms Sms (bacterial rad 90.2 0.88 1.9E-05 47.0 7.3 78 2-84 91-169 (372)
271 PTZ00185 ATPase alpha subunit; 90.1 1.6 3.4E-05 46.3 9.0 82 2-84 198-300 (574)
272 PRK12678 transcription termina 90.0 0.74 1.6E-05 49.2 6.6 82 2-84 425-514 (672)
273 KOG0991 Replication factor C, 90.0 0.51 1.1E-05 43.8 4.7 70 1-85 56-125 (333)
274 PF00154 RecA: recA bacterial 90.0 1.1 2.3E-05 44.9 7.4 76 2-85 62-143 (322)
275 COG0468 RecA RecA/RadA recombi 89.9 1.6 3.4E-05 42.9 8.3 80 2-84 69-152 (279)
276 PTZ00035 Rad51 protein; Provis 89.8 1.7 3.7E-05 44.3 9.0 48 2-50 127-178 (337)
277 PRK04301 radA DNA repair and r 89.8 1.7 3.7E-05 44.2 9.0 47 2-49 111-161 (317)
278 cd03115 SRP The signal recogni 89.4 1.3 2.9E-05 40.3 7.3 20 1-20 8-27 (173)
279 COG1223 Predicted ATPase (AAA+ 89.4 2.3 5E-05 40.3 8.5 121 2-143 160-298 (368)
280 TIGR01039 atpD ATP synthase, F 89.4 1.7 3.6E-05 45.8 8.5 82 2-84 152-248 (461)
281 COG1618 Predicted nucleotide k 89.4 0.41 8.9E-06 41.8 3.5 24 1-25 13-36 (179)
282 cd01132 F1_ATPase_alpha F1 ATP 89.4 0.96 2.1E-05 44.0 6.4 80 2-85 78-173 (274)
283 TIGR01041 ATP_syn_B_arch ATP s 89.3 1.2 2.6E-05 47.1 7.6 83 2-84 150-249 (458)
284 TIGR02639 ClpA ATP-dependent C 89.3 0.55 1.2E-05 53.7 5.6 73 2-85 493-565 (731)
285 PF13238 AAA_18: AAA domain; P 89.3 0.26 5.6E-06 42.3 2.3 17 1-17 6-22 (129)
286 TIGR00708 cobA cob(I)alamin ad 89.2 1.7 3.8E-05 39.1 7.5 107 2-111 14-140 (173)
287 PRK06067 flagellar accessory p 89.0 2 4.3E-05 41.5 8.5 39 2-44 34-72 (234)
288 TIGR03346 chaperone_ClpB ATP-d 89.0 3.2 6.9E-05 48.5 11.5 126 2-142 203-349 (852)
289 CHL00206 ycf2 Ycf2; Provisiona 88.9 4.6 9.9E-05 49.8 12.5 78 62-139 1721-1814(2281)
290 KOG0730 AAA+-type ATPase [Post 88.7 2.1 4.7E-05 46.2 8.8 122 2-144 477-617 (693)
291 TIGR03346 chaperone_ClpB ATP-d 88.5 0.74 1.6E-05 53.6 6.0 76 2-85 604-679 (852)
292 PF08433 KTI12: Chromatin asso 88.5 0.46 9.9E-06 46.6 3.7 19 1-19 9-27 (270)
293 PF00448 SRP54: SRP54-type pro 88.5 2.1 4.5E-05 39.8 7.9 80 2-83 10-93 (196)
294 PRK06835 DNA replication prote 88.4 1.5 3.3E-05 44.4 7.4 28 2-31 192-219 (329)
295 PRK10865 protein disaggregatio 88.3 2.4 5.2E-05 49.4 9.8 125 2-142 208-354 (857)
296 KOG3347 Predicted nucleotide k 88.2 0.33 7.1E-06 41.6 2.1 26 2-34 16-41 (176)
297 CHL00060 atpB ATP synthase CF1 88.1 2 4.3E-05 45.5 8.2 82 2-84 170-273 (494)
298 COG0563 Adk Adenylate kinase a 88.0 0.98 2.1E-05 41.2 5.3 18 2-19 9-26 (178)
299 TIGR03324 alt_F1F0_F1_al alter 87.8 1.7 3.7E-05 46.1 7.5 79 2-84 171-265 (497)
300 PRK10865 protein disaggregatio 87.7 0.84 1.8E-05 53.0 5.7 76 2-85 607-682 (857)
301 PRK06002 fliI flagellum-specif 87.7 1.7 3.7E-05 45.6 7.3 80 2-84 174-265 (450)
302 PRK14722 flhF flagellar biosyn 87.6 2.1 4.5E-05 44.0 7.9 81 2-85 146-227 (374)
303 PRK07132 DNA polymerase III su 87.6 7.5 0.00016 38.9 11.6 93 72-171 89-184 (299)
304 cd02027 APSK Adenosine 5'-phos 87.6 2.2 4.7E-05 37.7 7.1 17 2-18 8-24 (149)
305 PRK04196 V-type ATP synthase s 87.5 1.8 3.9E-05 45.9 7.5 82 2-84 152-251 (460)
306 COG1875 NYN ribonuclease and A 87.3 0.86 1.9E-05 45.5 4.6 39 74-113 352-390 (436)
307 PRK08972 fliI flagellum-specif 87.3 1.7 3.6E-05 45.5 7.0 79 2-84 171-263 (444)
308 cd01134 V_A-ATPase_A V/A-type 87.1 2.9 6.2E-05 42.2 8.2 40 2-45 166-206 (369)
309 PRK04328 hypothetical protein; 87.1 2.5 5.5E-05 41.2 7.9 43 2-49 32-74 (249)
310 CHL00095 clpC Clp protease ATP 86.9 0.85 1.8E-05 52.9 5.2 76 2-85 548-623 (821)
311 COG0529 CysC Adenylylsulfate k 86.9 1.3 2.7E-05 39.5 4.9 20 1-20 31-50 (197)
312 KOG0734 AAA+-type ATPase conta 86.8 1.1 2.3E-05 47.0 5.2 63 2-85 346-408 (752)
313 PHA02244 ATPase-like protein 86.7 2 4.4E-05 43.7 7.0 17 2-18 128-144 (383)
314 KOG0473 Leucine-rich repeat pr 86.7 0.018 4E-07 52.9 -6.5 86 338-424 38-124 (326)
315 TIGR03499 FlhF flagellar biosy 86.7 2.2 4.8E-05 42.4 7.4 78 2-82 203-281 (282)
316 TIGR03878 thermo_KaiC_2 KaiC d 86.7 3.6 7.8E-05 40.3 8.8 30 2-33 45-74 (259)
317 KOG0743 AAA+-type ATPase [Post 86.7 34 0.00074 35.7 15.6 74 102-179 338-417 (457)
318 PRK03839 putative kinase; Prov 86.7 0.45 9.7E-06 43.8 2.3 19 1-19 8-26 (180)
319 PRK11823 DNA repair protein Ra 86.6 1.9 4.1E-05 46.0 7.2 77 2-83 89-166 (446)
320 COG0125 Tmk Thymidylate kinase 86.5 2.9 6.3E-05 39.1 7.6 42 2-45 12-53 (208)
321 cd01124 KaiC KaiC is a circadi 86.5 3.5 7.6E-05 38.0 8.3 39 2-44 8-46 (187)
322 TIGR02655 circ_KaiC circadian 86.5 2.7 5.9E-05 45.5 8.5 77 2-83 272-363 (484)
323 smart00370 LRR Leucine-rich re 86.5 0.6 1.3E-05 26.9 1.9 20 410-429 1-20 (26)
324 smart00369 LRR_TYP Leucine-ric 86.5 0.6 1.3E-05 26.9 1.9 20 410-429 1-20 (26)
325 PRK07276 DNA polymerase III su 86.4 7.8 0.00017 38.4 10.8 67 72-139 103-172 (290)
326 KOG0729 26S proteasome regulat 86.3 1.5 3.2E-05 41.6 5.4 92 2-114 220-329 (435)
327 KOG0473 Leucine-rich repeat pr 86.2 0.025 5.3E-07 52.1 -6.0 82 363-444 39-121 (326)
328 cd03247 ABCC_cytochrome_bd The 86.2 1.9 4.2E-05 39.4 6.3 58 65-126 109-169 (178)
329 PF07726 AAA_3: ATPase family 86.1 0.36 7.7E-06 40.7 1.2 19 2-20 8-26 (131)
330 PRK00625 shikimate kinase; Pro 86.0 0.52 1.1E-05 42.9 2.3 18 1-18 8-25 (173)
331 PRK06217 hypothetical protein; 85.9 1.1 2.4E-05 41.3 4.5 28 1-29 9-38 (183)
332 PRK08149 ATP synthase SpaL; Va 85.9 2.6 5.6E-05 44.2 7.5 79 2-84 160-252 (428)
333 PRK08927 fliI flagellum-specif 85.8 3 6.5E-05 43.8 8.0 79 2-84 167-259 (442)
334 COG0464 SpoVK ATPases of the A 85.8 4.6 0.0001 44.0 10.0 123 1-144 284-425 (494)
335 cd02025 PanK Pantothenate kina 85.8 3.3 7.1E-05 39.4 7.7 17 2-18 8-24 (220)
336 TIGR00416 sms DNA repair prote 85.7 2.5 5.4E-05 45.2 7.5 78 2-84 103-181 (454)
337 PF06745 KaiC: KaiC; InterPro 85.6 1.9 4.1E-05 41.3 6.1 40 2-44 28-67 (226)
338 PRK05986 cob(I)alamin adenolsy 85.5 4 8.6E-05 37.4 7.7 49 63-111 105-158 (191)
339 PRK09099 type III secretion sy 85.5 2.4 5.2E-05 44.7 7.1 80 2-84 172-264 (441)
340 PRK09519 recA DNA recombinatio 85.5 2.4 5.2E-05 47.9 7.5 75 2-83 69-148 (790)
341 cd01122 GP4d_helicase GP4d_hel 85.3 3.5 7.5E-05 40.9 8.1 43 2-47 39-81 (271)
342 TIGR03574 selen_PSTK L-seryl-t 85.3 3.2 7E-05 40.5 7.7 19 1-19 7-25 (249)
343 PRK00889 adenylylsulfate kinas 85.2 2.9 6.2E-05 38.2 6.9 19 1-19 12-30 (175)
344 PRK13849 putative crown gall t 85.2 3.8 8.2E-05 39.3 7.9 38 2-41 11-48 (231)
345 PF07728 AAA_5: AAA domain (dy 85.2 1.7 3.6E-05 37.9 5.1 36 2-42 8-43 (139)
346 PRK12724 flagellar biosynthesi 85.1 2.4 5.2E-05 44.1 6.8 76 2-82 232-308 (432)
347 COG1102 Cmk Cytidylate kinase 85.1 0.97 2.1E-05 39.6 3.3 37 2-51 9-45 (179)
348 cd01136 ATPase_flagellum-secre 85.1 3.5 7.7E-05 41.5 7.8 79 2-84 78-170 (326)
349 PRK06936 type III secretion sy 85.0 2.8 6.2E-05 43.9 7.3 79 2-84 171-263 (439)
350 PRK00771 signal recognition pa 84.9 1.8 4E-05 45.6 6.0 78 2-83 104-185 (437)
351 smart00367 LRR_CC Leucine-rich 84.7 0.51 1.1E-05 27.3 1.1 16 647-662 2-17 (26)
352 cd02019 NK Nucleoside/nucleoti 84.5 0.74 1.6E-05 34.4 2.1 16 2-17 8-23 (69)
353 PTZ00301 uridine kinase; Provi 84.5 1.6 3.5E-05 41.1 4.9 17 2-18 12-28 (210)
354 PRK06793 fliI flagellum-specif 84.4 3.1 6.6E-05 43.7 7.3 81 2-85 165-258 (432)
355 PRK12727 flagellar biosynthesi 84.2 3.2 7E-05 44.5 7.4 80 2-84 359-439 (559)
356 COG1428 Deoxynucleoside kinase 84.2 0.67 1.4E-05 42.6 2.1 19 1-19 12-30 (216)
357 PF13245 AAA_19: Part of AAA d 84.1 1.9 4.2E-05 32.8 4.3 16 2-17 19-35 (76)
358 PF13671 AAA_33: AAA domain; P 84.0 0.74 1.6E-05 40.4 2.3 17 1-17 7-23 (143)
359 TIGR00763 lon ATP-dependent pr 83.9 8 0.00017 44.7 11.1 17 2-18 356-372 (775)
360 CHL00059 atpA ATP synthase CF1 83.7 3.1 6.6E-05 44.1 6.9 80 2-85 150-245 (485)
361 cd00544 CobU Adenosylcobinamid 83.7 4.2 9E-05 36.8 7.1 75 2-83 8-83 (169)
362 cd01125 repA Hexameric Replica 83.6 4.3 9.3E-05 39.3 7.7 18 1-18 9-26 (239)
363 PRK06762 hypothetical protein; 83.5 0.78 1.7E-05 41.5 2.3 17 1-17 10-26 (166)
364 cd01131 PilT Pilus retraction 83.5 1.2 2.5E-05 41.8 3.5 99 2-111 10-109 (198)
365 PRK05922 type III secretion sy 83.5 4.2 9.1E-05 42.7 7.8 79 2-84 166-258 (434)
366 KOG0744 AAA+-type ATPase [Post 83.4 1.3 2.8E-05 43.4 3.7 19 2-20 186-204 (423)
367 COG0003 ArsA Predicted ATPase 83.3 1.6 3.5E-05 43.8 4.6 41 1-43 10-50 (322)
368 KOG0733 Nuclear AAA ATPase (VC 83.3 3 6.5E-05 44.7 6.6 142 2-166 554-718 (802)
369 TIGR03498 FliI_clade3 flagella 83.3 2.9 6.3E-05 43.8 6.6 80 2-84 149-241 (418)
370 PF07724 AAA_2: AAA domain (Cd 83.3 1.1 2.5E-05 40.5 3.3 34 2-36 12-45 (171)
371 cd03214 ABC_Iron-Siderophores_ 83.2 2.4 5.3E-05 38.9 5.5 108 2-114 34-161 (180)
372 cd03223 ABCD_peroxisomal_ALDP 83.2 3.9 8.6E-05 36.9 6.8 105 2-114 36-151 (166)
373 TIGR03496 FliI_clade1 flagella 83.2 3.6 7.7E-05 43.1 7.2 79 2-84 146-238 (411)
374 COG0055 AtpD F0F1-type ATP syn 83.1 2.7 5.8E-05 42.2 5.8 82 2-84 156-252 (468)
375 TIGR01313 therm_gnt_kin carboh 83.1 3.9 8.5E-05 36.7 6.8 17 1-17 6-22 (163)
376 PF02367 UPF0079: Uncharacteri 83.1 0.79 1.7E-05 38.7 2.0 17 3-19 25-41 (123)
377 TIGR01069 mutS2 MutS2 family p 82.9 2.4 5.2E-05 48.5 6.3 113 73-194 402-523 (771)
378 KOG1514 Origin recognition com 82.8 16 0.00036 40.1 11.9 105 2-110 431-548 (767)
379 PRK07165 F0F1 ATP synthase sub 82.7 3.4 7.5E-05 43.9 6.9 79 2-84 152-244 (507)
380 PRK07594 type III secretion sy 82.6 3 6.5E-05 43.8 6.3 79 2-84 164-256 (433)
381 COG0467 RAD55 RecA-superfamily 82.6 3.6 7.8E-05 40.4 6.8 45 2-51 32-76 (260)
382 PRK08233 hypothetical protein; 82.5 0.85 1.8E-05 42.0 2.2 18 1-18 11-28 (182)
383 TIGR02858 spore_III_AA stage I 82.3 1.3 2.7E-05 43.6 3.3 46 65-113 186-231 (270)
384 COG3640 CooC CO dehydrogenase 82.3 1.9 4E-05 40.5 4.1 44 2-53 9-52 (255)
385 PF01656 CbiA: CobQ/CobB/MinD/ 82.0 2.1 4.6E-05 39.8 4.7 32 1-34 7-38 (195)
386 TIGR00455 apsK adenylylsulfate 81.9 5.4 0.00012 36.7 7.4 17 2-18 27-43 (184)
387 PRK13976 thymidylate kinase; P 81.8 5.3 0.00012 37.6 7.2 19 2-20 9-27 (209)
388 PRK09281 F0F1 ATP synthase sub 81.7 3.7 8E-05 44.1 6.8 80 2-85 171-266 (502)
389 KOG1532 GTPase XAB1, interacts 81.5 1.2 2.6E-05 42.5 2.7 21 1-21 27-47 (366)
390 PF03029 ATP_bind_1: Conserved 81.3 1.3 2.8E-05 42.7 3.0 20 1-20 4-23 (238)
391 PF00910 RNA_helicase: RNA hel 81.3 1.5 3.2E-05 36.2 3.0 19 2-20 7-25 (107)
392 PHA02518 ParA-like protein; Pr 81.3 2.5 5.3E-05 40.0 5.0 36 2-39 10-45 (211)
393 PF03969 AFG1_ATPase: AFG1-lik 81.0 1.4 3E-05 45.3 3.3 94 2-113 71-169 (362)
394 PF02374 ArsA_ATPase: Anion-tr 81.0 2.1 4.5E-05 43.1 4.5 38 2-41 10-47 (305)
395 TIGR02655 circ_KaiC circadian 81.0 6.6 0.00014 42.6 8.6 39 2-44 30-69 (484)
396 PF10443 RNA12: RNA12 protein; 81.0 47 0.001 34.7 13.9 112 74-189 149-297 (431)
397 COG2884 FtsE Predicted ATPase 81.0 2.3 5.1E-05 38.5 4.1 50 64-115 147-201 (223)
398 PTZ00088 adenylate kinase 1; P 81.0 1.9 4E-05 41.3 3.9 18 1-18 14-31 (229)
399 PRK07721 fliI flagellum-specif 80.8 3.3 7.1E-05 43.8 6.0 79 2-83 167-258 (438)
400 COG1157 FliI Flagellar biosynt 80.8 6.6 0.00014 40.3 7.7 78 2-83 172-263 (441)
401 cd03228 ABCC_MRP_Like The MRP 80.8 3.6 7.7E-05 37.4 5.6 49 65-114 107-158 (171)
402 PRK00131 aroK shikimate kinase 80.8 1.1 2.4E-05 40.8 2.2 18 1-18 12-29 (175)
403 PLN02924 thymidylate kinase 80.7 7.3 0.00016 37.0 7.8 44 2-46 25-68 (220)
404 TIGR03881 KaiC_arch_4 KaiC dom 80.6 4.9 0.00011 38.6 6.8 43 2-49 29-71 (229)
405 TIGR00959 ffh signal recogniti 80.6 6.2 0.00013 41.6 7.9 17 2-18 108-124 (428)
406 cd02042 ParA ParA and ParB of 80.6 1.2 2.6E-05 36.4 2.2 18 2-19 9-26 (104)
407 PF07015 VirC1: VirC1 protein; 80.5 3.2 6.9E-05 39.2 5.1 37 2-40 11-47 (231)
408 TIGR00962 atpA proton transloc 80.5 4.2 9E-05 43.7 6.7 80 2-85 170-265 (501)
409 cd00984 DnaB_C DnaB helicase C 80.5 8.5 0.00018 37.3 8.5 43 2-47 22-64 (242)
410 cd02021 GntK Gluconate kinase 80.4 1.1 2.5E-05 39.6 2.2 17 1-17 7-23 (150)
411 cd02037 MRP-like MRP (Multiple 80.3 6.1 0.00013 35.7 7.0 18 2-19 9-26 (169)
412 PRK02118 V-type ATP synthase s 80.3 6.7 0.00014 41.1 7.9 79 2-84 149-242 (436)
413 PRK13947 shikimate kinase; Pro 80.2 1.2 2.6E-05 40.5 2.2 19 1-19 9-27 (171)
414 PRK13343 F0F1 ATP synthase sub 80.0 4.3 9.3E-05 43.4 6.5 80 2-85 171-266 (502)
415 KOG0739 AAA+-type ATPase [Post 80.0 3.6 7.9E-05 39.9 5.3 62 2-84 175-236 (439)
416 PF00485 PRK: Phosphoribulokin 80.0 1.2 2.7E-05 41.4 2.4 18 2-19 8-25 (194)
417 COG4608 AppF ABC-type oligopep 80.0 5.5 0.00012 38.5 6.6 109 2-114 48-173 (268)
418 smart00369 LRR_TYP Leucine-ric 79.6 1.4 2.9E-05 25.4 1.6 19 366-384 2-20 (26)
419 smart00370 LRR Leucine-rich re 79.6 1.4 2.9E-05 25.4 1.6 19 366-384 2-20 (26)
420 KOG2228 Origin recognition com 79.4 13 0.00027 37.1 8.8 138 2-142 58-219 (408)
421 PRK10646 ADP-binding protein; 79.3 1.2 2.6E-05 39.2 1.9 17 3-19 38-54 (153)
422 COG1192 Soj ATPases involved i 79.3 2.4 5.1E-05 41.7 4.2 34 2-36 12-45 (259)
423 PRK09302 circadian clock prote 79.2 7.5 0.00016 42.6 8.5 43 2-49 282-324 (509)
424 PF12775 AAA_7: P-loop contain 79.2 1.2 2.5E-05 44.0 1.9 68 2-83 42-110 (272)
425 PRK05688 fliI flagellum-specif 79.2 6.1 0.00013 41.7 7.3 79 2-84 177-269 (451)
426 TIGR00150 HI0065_YjeE ATPase, 79.0 1.3 2.8E-05 38.0 1.9 18 2-19 31-48 (133)
427 TIGR03497 FliI_clade2 flagella 78.8 5.6 0.00012 41.7 6.9 79 2-84 146-238 (413)
428 cd00227 CPT Chloramphenicol (C 78.7 1.4 3E-05 40.3 2.2 17 1-17 10-26 (175)
429 KOG0726 26S proteasome regulat 78.7 4.6 0.0001 39.0 5.6 61 2-83 228-288 (440)
430 PF03266 NTPase_1: NTPase; In 78.6 1.6 3.4E-05 39.5 2.4 17 2-18 8-24 (168)
431 PRK10867 signal recognition pa 78.5 7.8 0.00017 40.9 7.9 18 2-19 109-126 (433)
432 PRK11034 clpA ATP-dependent Cl 78.5 2.1 4.6E-05 48.6 4.0 73 2-85 497-569 (758)
433 COG3265 GntK Gluconate kinase 78.4 7.3 0.00016 33.8 6.1 19 2-20 4-22 (161)
434 cd03238 ABC_UvrA The excision 78.4 3.7 8E-05 37.4 4.8 58 65-126 98-161 (176)
435 cd02029 PRK_like Phosphoribulo 78.4 6.9 0.00015 38.0 6.8 18 2-19 8-25 (277)
436 COG0542 clpA ATP-binding subun 78.3 2 4.3E-05 48.2 3.5 95 2-108 530-641 (786)
437 TIGR03880 KaiC_arch_3 KaiC dom 78.2 11 0.00024 36.0 8.4 39 2-44 25-63 (224)
438 PRK13949 shikimate kinase; Pro 78.1 1.5 3.3E-05 39.7 2.2 18 1-18 9-26 (169)
439 TIGR01026 fliI_yscN ATPase Fli 78.0 6.6 0.00014 41.6 7.2 79 2-84 172-264 (440)
440 cd02024 NRK1 Nicotinamide ribo 78.0 1.5 3.2E-05 40.4 2.1 16 2-17 8-23 (187)
441 PRK14974 cell division protein 77.8 7.1 0.00015 39.7 7.1 82 1-85 148-234 (336)
442 PRK04192 V-type ATP synthase s 77.8 4 8.8E-05 44.2 5.6 78 2-83 236-334 (586)
443 PRK05703 flhF flagellar biosyn 77.7 5.8 0.00013 42.0 6.7 79 2-83 230-309 (424)
444 PRK04040 adenylate kinase; Pro 77.6 1.6 3.4E-05 40.4 2.2 18 1-18 10-27 (188)
445 COG0572 Udk Uridine kinase [Nu 77.6 1.5 3.4E-05 40.8 2.1 19 2-20 17-35 (218)
446 PRK14529 adenylate kinase; Pro 77.5 6.3 0.00014 37.4 6.2 79 1-85 8-88 (223)
447 PRK06547 hypothetical protein; 77.5 1.6 3.6E-05 39.6 2.3 18 1-18 23-40 (172)
448 TIGR01359 UMP_CMP_kin_fam UMP- 77.3 1.6 3.5E-05 40.2 2.2 17 1-17 7-23 (183)
449 PRK10787 DNA-binding ATP-depen 77.3 5.1 0.00011 46.0 6.6 17 2-18 358-374 (784)
450 PRK11889 flhF flagellar biosyn 77.2 9 0.00019 39.6 7.5 80 2-84 250-331 (436)
451 TIGR02546 III_secr_ATP type II 77.1 8.5 0.00019 40.6 7.7 79 2-84 154-246 (422)
452 PRK05480 uridine/cytidine kina 77.0 1.6 3.5E-05 41.2 2.2 16 2-17 15-30 (209)
453 PRK08472 fliI flagellum-specif 76.9 4.8 0.0001 42.3 5.7 79 2-84 166-257 (434)
454 KOG2170 ATPase of the AAA+ sup 76.8 5.9 0.00013 38.7 5.7 70 2-85 119-190 (344)
455 PRK12726 flagellar biosynthesi 76.7 12 0.00026 38.5 8.2 80 2-84 215-296 (407)
456 PRK09302 circadian clock prote 76.6 9.3 0.0002 41.8 8.2 41 2-45 40-80 (509)
457 PRK12723 flagellar biosynthesi 76.6 8.8 0.00019 39.9 7.5 80 2-84 183-265 (388)
458 KOG1051 Chaperone HSP104 and r 76.3 4.5 9.8E-05 46.2 5.6 73 2-85 600-672 (898)
459 PF14532 Sigma54_activ_2: Sigm 76.3 0.84 1.8E-05 39.8 0.0 38 74-111 70-110 (138)
460 PRK13946 shikimate kinase; Pro 76.3 1.8 3.9E-05 39.9 2.3 19 1-19 18-36 (184)
461 cd00464 SK Shikimate kinase (S 76.3 1.9 4.1E-05 38.3 2.3 18 1-18 7-24 (154)
462 PF02223 Thymidylate_kin: Thym 76.2 4 8.7E-05 37.6 4.6 42 2-46 5-47 (186)
463 PRK06696 uridine kinase; Valid 76.2 1.8 3.8E-05 41.5 2.2 18 2-19 31-48 (223)
464 PRK03846 adenylylsulfate kinas 76.1 6 0.00013 36.9 5.8 18 1-18 32-49 (198)
465 cd03221 ABCF_EF-3 ABCF_EF-3 E 76.0 5.1 0.00011 35.1 5.0 93 2-114 35-130 (144)
466 PRK05342 clpX ATP-dependent pr 76.0 4.3 9.3E-05 42.7 5.1 17 2-18 117-133 (412)
467 COG0703 AroK Shikimate kinase 75.8 2 4.3E-05 38.5 2.2 20 1-20 10-29 (172)
468 cd01983 Fer4_NifH The Fer4_Nif 75.7 2.3 5E-05 33.9 2.5 18 2-19 8-25 (99)
469 TIGR00064 ftsY signal recognit 75.7 13 0.00028 36.7 8.2 30 1-32 80-109 (272)
470 COG0802 Predicted ATPase or ki 75.6 1.8 3.8E-05 37.6 1.8 17 3-19 35-51 (149)
471 PRK00409 recombination and DNA 75.5 7.6 0.00016 44.7 7.4 113 73-194 407-528 (782)
472 PRK13975 thymidylate kinase; P 75.5 2 4.3E-05 40.1 2.3 19 1-19 10-28 (196)
473 cd02040 NifH NifH gene encodes 75.4 3.7 8E-05 40.6 4.4 34 2-37 10-43 (270)
474 PRK06820 type III secretion sy 75.1 7.4 0.00016 41.0 6.5 79 2-84 172-264 (440)
475 cd03281 ABC_MSH5_euk MutS5 hom 75.0 2.6 5.6E-05 39.9 3.0 44 72-115 107-158 (213)
476 COG1936 Predicted nucleotide k 75.0 1.7 3.7E-05 38.6 1.6 13 2-14 9-21 (180)
477 COG1149 MinD superfamily P-loo 75.0 2.7 5.8E-05 40.3 3.0 26 2-29 11-36 (284)
478 PF01202 SKI: Shikimate kinase 74.8 2 4.4E-05 38.4 2.1 19 2-20 1-19 (158)
479 TIGR00235 udk uridine kinase. 74.6 1.9 4.2E-05 40.6 2.0 17 2-18 15-31 (207)
480 PF08303 tRNA_lig_kinase: tRNA 74.6 4.3 9.3E-05 35.9 3.9 40 2-48 8-50 (168)
481 cd02036 MinD Bacterial cell di 74.6 2.3 5E-05 38.9 2.5 20 1-20 8-27 (179)
482 PRK13695 putative NTPase; Prov 74.5 3.4 7.3E-05 37.7 3.5 18 2-19 9-26 (174)
483 PRK07196 fliI flagellum-specif 74.4 8.4 0.00018 40.5 6.7 16 2-17 164-179 (434)
484 PRK13948 shikimate kinase; Pro 74.4 2.2 4.8E-05 39.1 2.3 18 1-18 18-35 (182)
485 COG0541 Ffh Signal recognition 74.1 7.7 0.00017 40.1 6.1 51 2-54 109-160 (451)
486 PRK00698 tmk thymidylate kinas 74.0 14 0.0003 34.6 7.7 18 2-19 12-29 (205)
487 PRK05057 aroK shikimate kinase 74.0 2.3 4.9E-05 38.7 2.2 18 1-18 12-29 (172)
488 PF07088 GvpD: GvpD gas vesicl 73.9 2.5 5.3E-05 42.9 2.5 20 1-20 18-37 (484)
489 KOG0727 26S proteasome regulat 73.9 5.8 0.00013 37.4 4.8 19 2-20 198-216 (408)
490 PRK03731 aroL shikimate kinase 73.8 2.4 5.1E-05 38.6 2.3 18 1-18 10-27 (171)
491 PRK05439 pantothenate kinase; 73.8 10 0.00022 38.0 6.9 70 2-74 95-166 (311)
492 PRK12339 2-phosphoglycerate ki 73.7 2.3 5E-05 39.6 2.2 17 1-17 11-27 (197)
493 PRK15429 formate hydrogenlyase 73.7 4.6 9.9E-05 46.1 5.0 16 2-17 408-423 (686)
494 cd02034 CooC The accessory pro 73.5 2.8 6.1E-05 35.1 2.5 20 1-20 7-26 (116)
495 PRK07004 replicative DNA helic 73.5 7.9 0.00017 41.5 6.5 44 2-48 222-265 (460)
496 COG0305 DnaB Replicative DNA h 73.2 12 0.00025 39.3 7.4 78 2-86 205-290 (435)
497 PRK05973 replicative DNA helic 73.2 7.9 0.00017 37.1 5.7 40 2-45 73-112 (237)
498 PRK14532 adenylate kinase; Pro 73.2 2.3 5E-05 39.3 2.2 17 1-17 8-24 (188)
499 TIGR01360 aden_kin_iso1 adenyl 73.2 2.4 5.2E-05 39.1 2.3 17 1-17 11-27 (188)
500 KOG2004 Mitochondrial ATP-depe 73.0 16 0.00036 40.2 8.4 128 2-142 447-596 (906)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-74 Score=635.74 Aligned_cols=439 Identities=33% Similarity=0.499 Sum_probs=366.1
Q ss_pred CCCCcHHHHHHHHHHHhh-hccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcch--hhHHHHHHHHHHhcCCcEEE
Q 042869 1 MGGIGKTTLVKEVGRQVK-ENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSH--ETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~l~~~kr~Ll 77 (707)
|||+||||||+.++|+.. ++.+||.++||.||+.++..+++++|++.++........ .......+.+.|. +|||+|
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfll 265 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLL 265 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEE
Confidence 999999999999999998 999999999999999999999999999998874333322 2345566666666 589999
Q ss_pred EEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEeecCChHHHHHHHHhhhcCC--CCCchhHHHH
Q 042869 78 ILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDC--RENGELKSVA 155 (707)
Q Consensus 78 VlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~ 155 (707)
|+||||+..+|+.++.++|...+||+|++|||+++|+...++....++++.|+++|||.||++.||.. ..++.++++|
T Consensus 266 vLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~la 345 (889)
T KOG4658|consen 266 VLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELA 345 (889)
T ss_pred EEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHH
Confidence 99999999999999999999989999999999999987668888999999999999999999999854 3445589999
Q ss_pred HHHHHHcCCcchHHHHHHHHhccC-ChhHHHHHHHHHHHhhccCCCccccccceeeeeeecccCChHHHHHHHHHhcccc
Q 042869 156 AEIVKECAGLPIAIVPIAKALKNK-SPYEWRNALRQLERTFLRSFSGTQAVAAYSTIELSYYQLEGEELRQTFLLIGYTF 234 (707)
Q Consensus 156 ~~i~~~c~g~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~~~fp 234 (707)
++++++|+|+|||++++|+.|+.+ +..+|+++.+.+.+....+.++ ..+.+++++++||+.||++ +|.||+|||.||
T Consensus 346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~-~~~~i~~iLklSyd~L~~~-lK~CFLycalFP 423 (889)
T KOG4658|consen 346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSG-MEESILPILKLSYDNLPEE-LKSCFLYCALFP 423 (889)
T ss_pred HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCc-hhhhhHHhhhccHhhhhHH-HHHHHHhhccCC
Confidence 999999999999999999999966 7779999999987774444422 4678999999999999955 999999999999
Q ss_pred ---ccchhhhHHhhhcccccccchhHHHHHHHHHHHHHHHhhhcccccCC---cccceehhHHHHHhhccce--------
Q 042869 235 ---ISCVKDVIYYGMGLGLFQNINTLEEARDRAHTLIDKLKNSCLLLDGW---RSEWFSMHDVVRDVAISHV-------- 300 (707)
Q Consensus 235 ---~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~~mHdli~~la~~~~-------- 300 (707)
.+.++.++.+|+||||+.+......+++.+++++.+|++++++.... +...|+|||++|++|.+..
T Consensus 424 ED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e 503 (889)
T KOG4658|consen 424 EDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEE 503 (889)
T ss_pred cccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccccccc
Confidence 78999999999999999987777888999999999999999998764 4578999999999999811
Q ss_pred -EEEEEecccccCCCCccccccceEEeccCCCCCCCCCCCCCCccceeeecccc--ccccCchhhcCCCCccEEEecCC-
Q 042869 301 -FAVEIEVVALTSWPDKDTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHA--SLRIPSNFFTGMTELRVLDFTQM- 376 (707)
Q Consensus 301 -~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~- 376 (707)
..+..+ ......+....+..+|+++++++.+..++....++.|++|.+.+|. ...++..+|..++.||+||+++|
T Consensus 504 ~~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 504 NQIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred ceEEECC-cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence 222222 2334456667778999999999999998888889999999999886 67788888999999999999976
Q ss_pred CcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCCc-hhhchHHhhcCcCCCEEcCCC
Q 042869 377 YLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGSN-MQKLVEEIGRLTQLRLLDLSN 443 (707)
Q Consensus 377 ~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~ 443 (707)
.+.++|.+|++|.|||||+++++.+.. |..+++|+.|++|++..+. +..+|.....|.+|++|.+..
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 567799999999999888888887666 5666666666666666653 223333344466666666654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.7e-61 Score=561.98 Aligned_cols=623 Identities=18% Similarity=0.216 Sum_probs=437.5
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEe---cCC-----------cC-HHHHHHHHHHHhchhhhhcchhhHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRV---SQT-----------PQ-IKNIQGEIAEKIGLELAEQSHETVRAGRL 65 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 65 (707)
|||+||||||+++|+.... .|+..+|+.. +.. .+ ...++++++.++........ .....+
T Consensus 215 ~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~ 289 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI---YHLGAM 289 (1153)
T ss_pred CCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc---CCHHHH
Confidence 8999999999999998765 4888877642 111 01 12344445444322211110 112345
Q ss_pred HHHHhcCCcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEeecCChHHHHHHHHhhhcCC
Q 042869 66 LERLKKEPKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDC 145 (707)
Q Consensus 66 ~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 145 (707)
.+.+. +||+||||||||+.++|+.+.....++++||+||||||+++++. ..+....|+++.+++++|++||+++||+.
T Consensus 290 ~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 290 EERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred HHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 55555 48999999999999999999887778889999999999999974 34567899999999999999999999854
Q ss_pred -CCCchhHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhhccCCCccccccceeeeeeecccCChHHHH
Q 042869 146 -RENGELKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLERTFLRSFSGTQAVAAYSTIELSYYQLEGEELR 224 (707)
Q Consensus 146 -~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk 224 (707)
.+++++.+++++|+++|+|+|||++++|++|++++..+|++++.+++... ...+..++++||++|+++..|
T Consensus 368 ~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~--------~~~I~~~L~~SYd~L~~~~~k 439 (1153)
T PLN03210 368 NSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL--------DGKIEKTLRVSYDGLNNKKDK 439 (1153)
T ss_pred CCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc--------cHHHHHHHHHhhhccCccchh
Confidence 34556889999999999999999999999999999999999999987643 346789999999999874369
Q ss_pred HHHHHhccccccchhhhHHhhhcccccccchhHHHHHHHHHHHHHHHhhhcccccCCcccceehhHHHHHhhccceEEEE
Q 042869 225 QTFLLIGYTFISCVKDVIYYGMGLGLFQNINTLEEARDRAHTLIDKLKNSCLLLDGWRSEWFSMHDVVRDVAISHVFAVE 304 (707)
Q Consensus 225 ~~fl~~~~fp~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHdli~~la~~~~~~~~ 304 (707)
.||+++|+||.....+.+..|.+.+.... ..-++.|+++++++.. ...+.|||++|+||++.+....
T Consensus 440 ~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 440 AIFRHIACLFNGEKVNDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred hhhheehhhcCCCCHHHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhc
Confidence 99999999983333344666766654421 1237889999999765 3569999999999987321110
Q ss_pred -EecccccCCCC-----------------------------------ccccccceEEeccCCCCC-------CCCC-CCC
Q 042869 305 -IEVVALTSWPD-----------------------------------KDTLKVCTAISLNNSNIS-------EPPQ-GFE 340 (707)
Q Consensus 305 -~~~~~~~~~~~-----------------------------------~~~~~~~~~l~l~~~~~~-------~~~~-~~~ 340 (707)
.++.+...|.. ...+.+++.|.+..+... .+|. +..
T Consensus 507 ~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~ 586 (1153)
T PLN03210 507 NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY 586 (1153)
T ss_pred CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhh
Confidence 00000000000 011233444444322110 1121 122
Q ss_pred C-CccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCC-CCCcccccCCCCCcEEEc
Q 042869 341 C-PQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCK-LGDMAIIGDLKKLEILTL 418 (707)
Q Consensus 341 ~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~~i~~l~~L~~L~l 418 (707)
+ ++||.|.+.++....+|..+ ...+|+.|+++++.+..+|..++.+++|++|+|++|. +..++.++.+++|++|++
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 2 45788888877777777653 4688999999999888898888899999999998876 555667888999999999
Q ss_pred CCC-chhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCC
Q 042869 419 RGS-NMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKL 497 (707)
Q Consensus 419 ~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 497 (707)
++| .+..+|..++++++|+.|++++|..++.+|.. + ++++|+.|++.+|... ...+. ...+|
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L------------~~~p~---~~~nL 727 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRL------------KSFPD---ISTNI 727 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCc------------ccccc---ccCCc
Confidence 987 57788989999999999999999999999875 2 7899999999888532 11111 14578
Q ss_pred cEEEEeeccCCCCCCChhhcccceEEEEEecceeccC-------C--CCCccceEEeeecCCcceecchhHHHHhcccce
Q 042869 498 TSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVG-------P--SDGISRMFRLKLTNGANICLNEGHIMQLKGIED 568 (707)
Q Consensus 498 ~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~-------~--~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~ 568 (707)
+.|++.++....+|..+ .+++|+.|.+..+...... + ......+..|.+.++......+...+.+++|+.
T Consensus 728 ~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred CeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 89999999888888876 5778888877543211110 0 001234455555555444434444567888888
Q ss_pred EeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCC
Q 042869 569 LTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQ 648 (707)
Q Consensus 569 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~ 648 (707)
|++.+|..++.++... .+++|+.|++++|..++.++. ..++|+.|++.+ +.++.+|. .+..+++
T Consensus 807 L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~-n~i~~iP~--si~~l~~ 870 (1153)
T PLN03210 807 LEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPD------ISTNISDLNLSR-TGIEEVPW--WIEKFSN 870 (1153)
T ss_pred EECCCCCCcCeeCCCC-------CccccCEEECCCCCccccccc------cccccCEeECCC-CCCccChH--HHhcCCC
Confidence 8888888777766432 377888888888877776631 134666666666 45666543 2466778
Q ss_pred CcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCccccccc
Q 042869 649 LQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLTSF 700 (707)
Q Consensus 649 L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~i 700 (707)
|+.|++.+|.+++.++. ....+++|+.|++++|++|+++
T Consensus 871 L~~L~L~~C~~L~~l~~-------------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSL-------------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCEEECCCCCCcCccCc-------------ccccccCCCeeecCCCcccccc
Confidence 88888888888877765 2235677777888888777754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-38 Score=321.02 Aligned_cols=249 Identities=33% Similarity=0.512 Sum_probs=196.2
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhh---cchhhHHHHHHHHHHhcCCcEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAE---QSHETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~l~~~kr~Ll 77 (707)
|||+||||||+++|++...+.+|+.++|+.+++..+..+++++|+++++..... ..+..+....+.+.+.+ +++||
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~Ll 105 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKD-KRCLL 105 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCC-TSEEE
T ss_pred CCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcc-cccee
Confidence 799999999999999977888899999999999999999999999999887432 22234456666666665 69999
Q ss_pred EEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEeecCChHHHHHHHHhhhcCCC--CCchhHHHH
Q 042869 78 ILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCR--ENGELKSVA 155 (707)
Q Consensus 78 VlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~--~~~~~~~~~ 155 (707)
||||||+...|+.+...++.+..|++||||||++.++.........|++++|+.++|++||.+.++... ..+...+.+
T Consensus 106 VlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 185 (287)
T PF00931_consen 106 VLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLA 185 (287)
T ss_dssp EEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHH
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998888777889999999999988753333367899999999999999999997543 345557789
Q ss_pred HHHHHHcCCcchHHHHHHHHhccC-ChhHHHHHHHHHHHhhccCCCccccccceeeeeeecccCChHHHHHHHHHhcccc
Q 042869 156 AEIVKECAGLPIAIVPIAKALKNK-SPYEWRNALRQLERTFLRSFSGTQAVAAYSTIELSYYQLEGEELRQTFLLIGYTF 234 (707)
Q Consensus 156 ~~i~~~c~g~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~~~fp 234 (707)
.+|+++|+|+|||++++|++++.+ +..+|+++++++........ + ....++.++.+||+.|+++ +|+||+|||+||
T Consensus 186 ~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~-~-~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~ 262 (287)
T PF00931_consen 186 KEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR-D-YDRSVFSALELSYDSLPDE-LRRCFLYLSIFP 262 (287)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS-G-SCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccceechhcCCcc-HHHHHhhCcCCC
Confidence 999999999999999999999633 78899999999877764321 1 4678899999999999997 899999999999
Q ss_pred ---ccchhhhHHhhhccccccc
Q 042869 235 ---ISCVKDVIYYGMGLGLFQN 253 (707)
Q Consensus 235 ---~~~~~~li~~w~~~g~~~~ 253 (707)
.+..+.++++|+++|++..
T Consensus 263 ~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 263 EGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp TTS-EEHHHHHHHHTT-HHTC-
T ss_pred CCceECHHHHHHHHHHCCCCcc
Confidence 6889999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=9.2e-24 Score=249.15 Aligned_cols=198 Identities=23% Similarity=0.285 Sum_probs=106.5
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCccccccCCCCEEEec
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~ 397 (707)
...+++|++.+|.+........+++|++|++++|.+....+..++++++|++|++++|.+.. +|..++++++|++|+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 34555556555555432222345556666666555543333335556666666666665543 55556666666666666
Q ss_pred CCCCCC--cccccCCCCCcEEEcCCCchh-hchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccc
Q 042869 398 NCKLGD--MAIIGDLKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWG 474 (707)
Q Consensus 398 ~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 474 (707)
+|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|+.|++..|.+.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~-- 273 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS-- 273 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee--
Confidence 665543 455566666666666665554 45555666666666666665544455544 556666666666555442
Q ss_pred cccccccccccccHHHhhcCCCCcEEEEeeccCC-CCCCChhhcccceEEEEEecc
Q 042869 475 KVGGVDGERRNASLDELNNLSKLTSLEILIQDEK-ALPRDLSFFKMLQRYRILIGY 529 (707)
Q Consensus 475 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~l~~~~~L~~L~l~~~~ 529 (707)
...+..+..+++|++|++++|... .+|..+..+++|+.|.+..+.
T Consensus 274 ----------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 274 ----------GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred ----------ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 223344455555555555554432 344444555555555554443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=6.3e-23 Score=242.09 Aligned_cols=347 Identities=18% Similarity=0.188 Sum_probs=175.9
Q ss_pred cccceEEeccCCCCCC-CC-CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCccccccCCCCEEE
Q 042869 319 LKVCTAISLNNSNISE-PP-QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSSLGLLQNLQTLS 395 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~ 395 (707)
...++.|++.+|.+.. +| .+..+++|++|++++|.+....+..++++++|++|++++|.+.. +|..++.+.+|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 4455666666555432 22 23455666666666555543333345566666666666665553 555666666666666
Q ss_pred ecCCCCCC--cccccCCCCCcEEEcCCCchh-hchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 396 LENCKLGD--MAIIGDLKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 396 l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
+++|.+.. |..++++++|++|++++|.+. .+|..+.++++|++|++++|...+.+|.. +.++++|+.|++.+|.+.
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFT 321 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccC
Confidence 66666543 455566666666666666554 45555666666666666665544455543 556666666666655542
Q ss_pred cccccccccccccccHHHhhcCCCCcEEEEeeccCC-CCCCChhhcccceEEEEEecceeccCCC--CCccceEEeeecC
Q 042869 473 WGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK-ALPRDLSFFKMLQRYRILIGYWWSVGPS--DGISRMFRLKLTN 549 (707)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~~~ 549 (707)
...+..+..+++|+.|++++|... .+|..+..+++|+.|+++.+......+. .....+..+.+..
T Consensus 322 ------------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 322 ------------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred ------------CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 233445666666666666666543 4555566666666666655543322111 1112233333333
Q ss_pred CcceecchhHHHHhcccceEeecCCCCcchhhhhccc------------------CcccccccccceeeccCcccccccc
Q 042869 550 GANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGR------------------EARTTAFSLLESLFLRDLRNLEEIC 611 (707)
Q Consensus 550 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~------------------~~~~~~~~~L~~L~l~~~~~l~~~~ 611 (707)
+......+.....+++|+.|++.++.-...++..+.. ......+++|+.|++++|.-...++
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 3322222233344555555555554322222211110 0011124455555555543222221
Q ss_pred ccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeec
Q 042869 612 RGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLEL 691 (707)
Q Consensus 612 ~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l 691 (707)
.....++|+.|++++| ++....+. .+..+++|+.|++++|.-...+|. .+..+++|++|+|
T Consensus 470 ----~~~~~~~L~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~-------------~~~~l~~L~~L~L 530 (968)
T PLN00113 470 ----DSFGSKRLENLDLSRN-QFSGAVPR-KLGSLSELMQLKLSENKLSGEIPD-------------ELSSCKKLVSLDL 530 (968)
T ss_pred ----cccccccceEEECcCC-ccCCccCh-hhhhhhccCEEECcCCcceeeCCh-------------HHcCccCCCEEEC
Confidence 1112345555555554 33322221 234556666666666543333332 3447889999999
Q ss_pred cCcccc
Q 042869 692 RSLAQL 697 (707)
Q Consensus 692 ~~cp~L 697 (707)
++|.-.
T Consensus 531 s~N~l~ 536 (968)
T PLN00113 531 SHNQLS 536 (968)
T ss_pred CCCccc
Confidence 988643
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=9.4e-21 Score=223.34 Aligned_cols=315 Identities=20% Similarity=0.260 Sum_probs=155.5
Q ss_pred CCCccceeeeccccc-------cccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCC
Q 042869 340 ECPQLRFLCIGYHAS-------LRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLK 411 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~-------~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~ 411 (707)
.|++|+.|.+..+.. ..+|..+..-..+||.|++.++.+..+|..+ .+.+|+.|++.+|.+.. +..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 566666666643321 1233332222235666666666666666665 35666666666666655 45556666
Q ss_pred CCcEEEcCCC-chhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHH
Q 042869 412 KLEILTLRGS-NMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDE 490 (707)
Q Consensus 412 ~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 490 (707)
+|++|+++++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++.+|... ...+..
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L------------~~Lp~~ 700 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL------------EILPTG 700 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc------------CccCCc
Confidence 6666666665 344555 3566666666666666666666654 566666666666665421 111111
Q ss_pred hhcCCCCcEEEEeecc-CCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcce-------ecchhHHHH
Q 042869 491 LNNLSKLTSLEILIQD-EKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANI-------CLNEGHIMQ 562 (707)
Q Consensus 491 l~~l~~L~~L~l~~~~-~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~-------~~~~~~~~~ 562 (707)
+ ++++|+.|+++++. ...+|.. .++|+.|.+..+.....+......++..|.+..+... .........
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhc
Confidence 1 45666666666553 2333322 3455666655444322222111122222222111000 000001111
Q ss_pred hcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhh
Q 042869 563 LKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVI 642 (707)
Q Consensus 563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~ 642 (707)
+++|+.|++.+++.+..++..+ ..+++|+.|++++|.+++.+|. . ..+++|+.|++++|.+++.+|..
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si------~~L~~L~~L~Ls~C~~L~~LP~---~-~~L~sL~~L~Ls~c~~L~~~p~~-- 844 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSI------QNLHKLEHLEIENCINLETLPT---G-INLESLESLDLSGCSRLRTFPDI-- 844 (1153)
T ss_pred cccchheeCCCCCCccccChhh------hCCCCCCEEECCCCCCcCeeCC---C-CCccccCEEECCCCCcccccccc--
Confidence 2344444444444444433322 1244444444444444444421 1 12444444444444444443221
Q ss_pred hccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCccccccccc
Q 042869 643 GRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLTSFCI 702 (707)
Q Consensus 643 ~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~i~~ 702 (707)
.++|+.|+++++ .++++|. .+..+++|++|++.+|++|+++|.
T Consensus 845 ---~~nL~~L~Ls~n-~i~~iP~-------------si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 845 ---STNISDLNLSRT-GIEEVPW-------------WIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ---ccccCEeECCCC-CCccChH-------------HHhcCCCCCEEECCCCCCcCccCc
Confidence 234444444442 3333332 345789999999999999998864
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.3e-21 Score=195.65 Aligned_cols=319 Identities=19% Similarity=0.247 Sum_probs=241.5
Q ss_pred ccccceEEeccCCCCCCCCCCC-CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEE
Q 042869 318 TLKVCTAISLNNSNISEPPQGF-ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLS 395 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 395 (707)
...+++.+++..|.+..+|.+. ...+|+.|++.+|.+..+..+.++-++.||+|||+.|.++.+|. ++..-.++++|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 3456777888888887777776 44558888888888888887778888899999999998888764 455557899999
Q ss_pred ecCCCCCC--cccccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 396 LENCKLGD--MAIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 396 l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
|++|.|+. ...+.++.+|.+|.|+.|.++.+|. .+.+|++|+.|++..| .+..+-.-.+..|.+|+.|.+..|.+.
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 99999887 4678888899999999999988885 4566999999999874 444443223788899999999888775
Q ss_pred cccccccccccccccHHHhhcCCCCcEEEEeeccCCCCC-CChhhcccceEEEEEecceeccCC--CCCccceEEeeecC
Q 042869 473 WGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALP-RDLSFFKMLQRYRILIGYWWSVGP--SDGISRMFRLKLTN 549 (707)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~~~ 549 (707)
.... ..+-.|.++++|++..|...++. .|+..++.|+.|+++++....+.. -....++..|++..
T Consensus 259 kL~D------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 259 KLDD------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred cccC------------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 3322 24567889999999998877664 467889999999999887644432 22346777788888
Q ss_pred CcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccc-cccccccccccCCCcCEEEe
Q 042869 550 GANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLE-EICRGPLTAESFCKLKTIEV 628 (707)
Q Consensus 550 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~i 628 (707)
+...++++..+..+..|+.|.|+. ..+..+... .+..+.+|+.|++++. .+. .+.........+++|++|.+
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~-----af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEG-----AFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccc-cchHHHHhh-----HHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheee
Confidence 888888888888999999999977 345555432 4556899999999874 232 12222333445999999999
Q ss_pred ccCCCcccccchhhhccCCCCcEEEEccCc
Q 042869 629 ERCDKLKKVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 629 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
.+ ++++.++... +.+|++||+|++.+..
T Consensus 400 ~g-Nqlk~I~krA-fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 400 TG-NQLKSIPKRA-FSGLEALEHLDLGDNA 427 (873)
T ss_pred cC-ceeeecchhh-hccCcccceecCCCCc
Confidence 98 8999997654 4689999999999864
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.7e-22 Score=203.31 Aligned_cols=338 Identities=20% Similarity=0.278 Sum_probs=184.4
Q ss_pred ccccceEEeccCCCCCCCCC-CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc--CCccccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPPQ-GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA--LPSSLGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L 394 (707)
.+..+++|.+....+..+|+ ...+.+|..|.+..|....+-.+ ++.++.||.+.+..|.+.. +|.+|-.+.-|..|
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 34455666666666655443 33566666666666665555433 4566677777777666544 67777777777777
Q ss_pred EecCCCCCC-cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 395 SLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 395 ~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
||++|++.+ |..+..-+++..|+|++|++..+|.. +-+|+.|-.||+++ +.+..+|.. +.+|.+|++|.+++|++.
T Consensus 109 DLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 109 DLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 777777666 66666667777777777777777644 34666677777776 556666665 567777777777777653
Q ss_pred cccccccccccccccHHHhhcCCCCcEEEEeecc--CCCCCCChhhcccceEEEEEecceeccCC-CCCccceEEeeecC
Q 042869 473 WGKVGGVDGERRNASLDELNNLSKLTSLEILIQD--EKALPRDLSFFKMLQRYRILIGYWWSVGP-SDGISRMFRLKLTN 549 (707)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~p~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~~~ 549 (707)
. ..+..+..+.+|+.|++++.. ...+|..+..+.+|..++++.+.....+. .+...++.+|.+++
T Consensus 187 h------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 187 H------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred H------------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 1 112223333333344444322 23344444444444444444443322221 11122223333322
Q ss_pred CcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCcc-ccccccccccccccCCCcCEEEe
Q 042869 550 GANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLR-NLEEICRGPLTAESFCKLKTIEV 628 (707)
Q Consensus 550 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~i 628 (707)
+....+.... +.-.+|++|+++. ..++.++..+. .+++|+.|.+.+.. +.+.+ |..++-+..|+.++.
T Consensus 255 N~iteL~~~~-~~W~~lEtLNlSr-NQLt~LP~avc------KL~kL~kLy~n~NkL~FeGi---PSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 255 NKITELNMTE-GEWENLETLNLSR-NQLTVLPDAVC------KLTKLTKLYANNNKLTFEGI---PSGIGKLIQLEVFHA 323 (1255)
T ss_pred CceeeeeccH-HHHhhhhhhcccc-chhccchHHHh------hhHHHHHHHhccCcccccCC---ccchhhhhhhHHHHh
Confidence 2222222111 1235666666665 34555554433 25666666665421 12223 344455666666666
Q ss_pred ccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCccccc
Q 042869 629 ERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLT 698 (707)
Q Consensus 629 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~ 698 (707)
.+ ++|+-+|. .+..+++|+.|.+.. ..|-.+|+ .++-+|-|+.|++.+.|+|.
T Consensus 324 an-N~LElVPE--glcRC~kL~kL~L~~-NrLiTLPe-------------aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 324 AN-NKLELVPE--GLCRCVKLQKLKLDH-NRLITLPE-------------AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hc-cccccCch--hhhhhHHHHHhcccc-cceeechh-------------hhhhcCCcceeeccCCcCcc
Confidence 55 55555532 345666677776653 45555554 34456777777777777665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=2.6e-22 Score=192.07 Aligned_cols=223 Identities=22% Similarity=0.277 Sum_probs=122.4
Q ss_pred ccceEEeccCCCCCCC-CCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 320 KVCTAISLNNSNISEP-PQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
.-+..+.+++|....+ +.+.++..+..|+++.|....+|+. +..+..|+.|+++++.+..+|++|+.+..|..|+..+
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence 3344555555555443 3334555566666666666666554 3455556666666666666666666666666666666
Q ss_pred CCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 399 CKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 399 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
|.+.. |+.++++.+|..|++.++++..+|+..-+++.|++||... +.++.+|.+ ++.|.+|..|++..|.+.....-
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lPef 224 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRNKIRFLPEF 224 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhcccccCCCC
Confidence 65554 5555555555555555555555555554555555555544 344555554 45555555555555544332211
Q ss_pred cc---------ccccccccHHH-hhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEe
Q 042869 478 GV---------DGERRNASLDE-LNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRL 545 (707)
Q Consensus 478 ~~---------~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 545 (707)
.. +.......+.+ ++.+++|..|+++.|..+++|..+.-+.+|++|+++.+.....++..+..++..|
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L 302 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFL 302 (565)
T ss_pred CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeeh
Confidence 00 00011222223 3366677777777777777777776677777777776666555555554444444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=4.3e-22 Score=200.41 Aligned_cols=321 Identities=18% Similarity=0.236 Sum_probs=244.8
Q ss_pred cccccceEEeccCCCCCC-CCCCCCCCccceeeecccccc--ccCchhhcCCCCccEEEecCCCcccCCccccccCCCCE
Q 042869 317 DTLKVCTAISLNNSNISE-PPQGFECPQLRFLCIGYHASL--RIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQT 393 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 393 (707)
....++.||++.+|.+.. ..+...+|.||++.+..|... .+|+++| ++..|.+||+++|.+...|..+..-+++-+
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 446788999999988755 456678999999999977654 5888865 699999999999999999999999999999
Q ss_pred EEecCCCCCC-c-ccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc
Q 042869 394 LSLENCKLGD-M-AIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 394 L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
|+|++|+|.. | +.+-+|..|-+|||++|.+..+|+.+.+|.+||+|.+++|+....--.. +..+++|+.|.+++...
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhcccccc
Confidence 9999999988 4 3456899999999999999999999999999999999997643221111 44578888888887654
Q ss_pred ccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCC-CCccceEEeeecCC
Q 042869 472 EWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPS-DGISRMFRLKLTNG 550 (707)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~~~~ 550 (707)
+ ...++.++..+.+|..++++.|....+|..+..+.+|++|+++.+........ ..-.++..|.++.+
T Consensus 210 T-----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 210 T-----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred h-----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 3 34566778889999999999999999999999999999999988776543221 11123333333333
Q ss_pred cceecchhHHHHhcccceEeecCCC-CcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEec
Q 042869 551 ANICLNEGHIMQLKGIEDLTLDGLP-DIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVE 629 (707)
Q Consensus 551 ~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~ 629 (707)
....+|. ....++.|+.|.+.+.. ..+-+++ ..+.+.+|+++..++ +.|+-+ |.....++.|+.|.+.
T Consensus 279 QLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPS------GIGKL~~Levf~aan-N~LElV---PEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 279 QLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPS------GIGKLIQLEVFHAAN-NKLELV---PEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhccchH-HHhhhHHHHHHHhccCcccccCCcc------chhhhhhhHHHHhhc-cccccC---chhhhhhHHHHHhccc
Confidence 3333443 44568888888886633 1122222 345688888888887 467766 4556678899999886
Q ss_pred cCCCcccccchhhhccCCCCcEEEEccCcchhhhh
Q 042869 630 RCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIF 664 (707)
Q Consensus 630 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~ 664 (707)
|+.|-.+|. .+.-|+.|+.|+++..++|.--|
T Consensus 348 -~NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 348 -HNRLITLPE--AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -ccceeechh--hhhhcCCcceeeccCCcCccCCC
Confidence 589988865 35789999999999999986444
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-20 Score=188.33 Aligned_cols=339 Identities=18% Similarity=0.245 Sum_probs=244.0
Q ss_pred ccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L 394 (707)
.+...+.|++.+|.++.+.. +.++++|+.+.+.+|....+|.. .....+|+.|+|.+|.|.++ ..++..++.||.|
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 45567788888888876543 35888999999988888888852 33455689999999888885 4567788889999
Q ss_pred EecCCCCCCc--ccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc
Q 042869 395 SLENCKLGDM--AIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 395 ~l~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
||+.|.++.. +++..=.++++|+|++|.++.+- ..+.++.+|..|.++. +.++.+|..++.+|++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccce
Confidence 9999988873 55666678999999998887665 3466788888999988 567888877788899999999988876
Q ss_pred ccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCCh-hhcccceEEEEEecceecc--CCCCCccceEEeeec
Q 042869 472 EWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDL-SFFKMLQRYRILIGYWWSV--GPSDGISRMFRLKLT 548 (707)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~~ 548 (707)
... .-..+.++++|+.|.+..|.+..+-+.. -.+.+++.|++..+..... ...++...+..|.+.
T Consensus 234 riv------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 234 RIV------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred eee------------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 411 1234677888888888888877776654 5678889999887765332 234444444444444
Q ss_pred CCc--ceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEE
Q 042869 549 NGA--NICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTI 626 (707)
Q Consensus 549 ~~~--~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 626 (707)
.+. .+....| ...++|+.|+|+. ..++.+..+ .+..+..|++|++++ +.+..+..+.+ ..+++|++|
T Consensus 302 ~NaI~rih~d~W--sftqkL~~LdLs~-N~i~~l~~~-----sf~~L~~Le~LnLs~-Nsi~~l~e~af--~~lssL~~L 370 (873)
T KOG4194|consen 302 YNAIQRIHIDSW--SFTQKLKELDLSS-NRITRLDEG-----SFRVLSQLEELNLSH-NSIDHLAEGAF--VGLSSLHKL 370 (873)
T ss_pred hhhhheeecchh--hhcccceeEeccc-cccccCChh-----HHHHHHHhhhhcccc-cchHHHHhhHH--HHhhhhhhh
Confidence 444 3444444 4578999999977 445555433 455688999999988 46666643333 457899999
Q ss_pred EeccCCCcccccch--hhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 627 EVERCDKLKKVFPL--VIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 627 ~i~~C~~L~~l~~~--~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
++++ +.+...... .....+++|+.|.+.|. ++++|+.... .++++|+.|++.+.+
T Consensus 371 dLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAf------------sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 371 DLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAF------------SGLEALEHLDLGDNA 427 (873)
T ss_pred cCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecchhhh------------ccCcccceecCCCCc
Confidence 9988 666654332 12356999999999994 8888886443 378888888887765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=2e-17 Score=158.94 Aligned_cols=294 Identities=20% Similarity=0.322 Sum_probs=184.6
Q ss_pred CCccccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCE
Q 042869 314 PDKDTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQT 393 (707)
Q Consensus 314 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 393 (707)
+..+.++.+..+.++.|++..+|++..|..|..|.+..|.+.-+|.+..+++..+.+||++.|++.+.|+.++.+++|.+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 34566788888999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhh-----------------------------------------
Q 042869 394 LSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIG----------------------------------------- 431 (707)
Q Consensus 394 L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~----------------------------------------- 431 (707)
||+++|.++. |.++|++ +|++|.+.||.+..+-.+|-
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~ 358 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI 358 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence 9999999998 8899999 99999999998765533221
Q ss_pred -cCcCCCEEcCCCCCCCcccchhhhhCCC--CCcEEEccCCCcccccccccccccccccHHHhhcCCCCcE-EEEeeccC
Q 042869 432 -RLTQLRLLDLSNCSKLKVIPAYVISSLS--RLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTS-LEILIQDE 507 (707)
Q Consensus 432 -~l~~L~~L~l~~~~~~~~~p~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~-L~l~~~~~ 507 (707)
.+.+.+.|++++ ..++.+|++++..-. -....++++|.+ ...+..+..+..+.+ +.+++|..
T Consensus 359 ~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL-------------~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 359 YAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQL-------------CELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred hhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchH-------------hhhhhhhHHHHHHHHHHHhhcCcc
Confidence 223344444444 344444444322111 123334444433 222233332222221 22333444
Q ss_pred CCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccC
Q 042869 508 KALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGRE 587 (707)
Q Consensus 508 ~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 587 (707)
.-.|..++.+++|..|+++.+..-. .|. -.+++..|+.|+++.. ....++.-.+
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~----------------------LP~-e~~~lv~Lq~LnlS~N-rFr~lP~~~y-- 478 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLND----------------------LPE-EMGSLVRLQTLNLSFN-RFRMLPECLY-- 478 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhh----------------------cch-hhhhhhhhheeccccc-ccccchHHHh--
Confidence 4444445555555555554332111 111 1223444555555442 2333322111
Q ss_pred cccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCc
Q 042869 588 ARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 588 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
....|+.+-.++ ..+.+++ +.....|.+|+.|++.+ +.+..+|| .++++.+|++|++.|.+
T Consensus 479 ----~lq~lEtllas~-nqi~~vd--~~~l~nm~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 479 ----ELQTLETLLASN-NQIGSVD--PSGLKNMRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred ----hHHHHHHHHhcc-ccccccC--hHHhhhhhhcceeccCC-CchhhCCh--hhccccceeEEEecCCc
Confidence 123333333333 4555553 11255677888888877 67777766 35778888888888765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=4.8e-18 Score=179.65 Aligned_cols=78 Identities=29% Similarity=0.357 Sum_probs=41.1
Q ss_pred ceEEeccCCCCCCCCC-CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCC
Q 042869 322 CTAISLNNSNISEPPQ-GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 322 ~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 400 (707)
+..|++.+|.....|. +..++.|+.|.++.|.+...|.+ .+++++|++|.|.+|....+|.++..+++|++|+++.|.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 4455555555544332 22455555555555555555532 345555555555555555555555555555555555544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=1.6e-17 Score=175.84 Aligned_cols=364 Identities=20% Similarity=0.220 Sum_probs=206.2
Q ss_pred ceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCC
Q 042869 322 CTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENC 399 (707)
Q Consensus 322 ~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 399 (707)
+.+|++..|.....| ...+.-+|++|++++|....+|.. +..+.+|+.|.++.|.+.++|.+++.+.+|++|+|..|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 566677766654422 223455699999999999999866 57899999999999999999999999999999999999
Q ss_pred CCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCC-------------------CCCcccchh------
Q 042869 400 KLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNC-------------------SKLKVIPAY------ 453 (707)
Q Consensus 400 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~-------------------~~~~~~p~~------ 453 (707)
.+.. |.++..+++|++|++++|++..+|.-+..+..+..++.++| ...+.++.+
T Consensus 102 ~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 102 RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence 9777 88999999999999999988877754443333333222222 111111111
Q ss_pred ------------hhhCCCCCcEEEccCCCcccccccccc------cccccccHHHhhcCCCCcEEEEeeccCCCCCCChh
Q 042869 454 ------------VISSLSRLEELYIGESPIEWGKVGGVD------GERRNASLDELNNLSKLTSLEILIQDEKALPRDLS 515 (707)
Q Consensus 454 ------------~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~ 515 (707)
.+..+.+|+.+....|.+......... ....-....--..-.+|+.++++.+....+|+|+.
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~ 261 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIG 261 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHH
Confidence 023334444444433333211110000 00000000111112355556666655555665555
Q ss_pred hcccceEEEEEecc-----------------------eeccCCCCC-ccceEEeeecCCcceecchhHHHHhcc-cceEe
Q 042869 516 FFKMLQRYRILIGY-----------------------WWSVGPSDG-ISRMFRLKLTNGANICLNEGHIMQLKG-IEDLT 570 (707)
Q Consensus 516 ~~~~L~~L~l~~~~-----------------------~~~~~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~l~~-L~~L~ 570 (707)
.+.+|+.+.+..+. ..-.++... ...+..|++..+.....++..+..++. |+.|.
T Consensus 262 ~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred hcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 55555555554433 222222222 334444444444444444433322222 33333
Q ss_pred ecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCc
Q 042869 571 LDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQ 650 (707)
Q Consensus 571 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~ 650 (707)
.+.. .+...+. . ....++.|+.|.+.+. .+++-+. ....+|++|+.|++.+ ++|..+|. .....++.||
T Consensus 342 ~s~n-~l~~lp~-~----~e~~~~~Lq~LylanN-~Ltd~c~--p~l~~~~hLKVLhLsy-NrL~~fpa-s~~~kle~Le 410 (1081)
T KOG0618|consen 342 VSSN-KLSTLPS-Y----EENNHAALQELYLANN-HLTDSCF--PVLVNFKHLKVLHLSY-NRLNSFPA-SKLRKLEELE 410 (1081)
T ss_pred hhhc-ccccccc-c----cchhhHHHHHHHHhcC-cccccch--hhhccccceeeeeecc-cccccCCH-HHHhchHHhH
Confidence 3221 1222211 0 2234677888888774 3443211 2345688888888888 78887744 5667888888
Q ss_pred EEEEccCcchhhhhccccc---ccccC------CCCCcceeecccceeeccCcccccc
Q 042869 651 SVKVSSCQNMEVIFAAERG---DESSN------NNGTEVIEVTQLRTLELRSLAQLTS 699 (707)
Q Consensus 651 ~L~i~~C~~l~~i~~~~~~---~~~~~------~~~~~~~~l~~L~~L~l~~cp~L~~ 699 (707)
+|+++|. .|+.+|..... ..... ..-+++..+|+|+.++++ |-+|+.
T Consensus 411 eL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~ 466 (1081)
T KOG0618|consen 411 ELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSE 466 (1081)
T ss_pred HHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhh
Confidence 8888884 67666642110 01111 112355677888888885 444553
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-17 Score=139.33 Aligned_cols=166 Identities=24% Similarity=0.380 Sum_probs=92.8
Q ss_pred CCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCC
Q 042869 334 EPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKK 412 (707)
Q Consensus 334 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~ 412 (707)
.++....+.++..|.++.|....+|+. +..+.+|++|++.+|.++++|.+|+.++.|+.|++.-|++.. |..+|.++.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 344444555555555555555555555 345555666666655555566556666666666555555444 555555666
Q ss_pred CcEEEcCCCchh--hchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHH
Q 042869 413 LEILTLRGSNMQ--KLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDE 490 (707)
Q Consensus 413 L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 490 (707)
|+.||+.+|++. .+|..+-.|..|+.|++++ +....+|.+ +++|++||.|.+..|.+ -..+.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndl-------------l~lpke 168 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDL-------------LSLPKE 168 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCch-------------hhCcHH
Confidence 666666555443 3555555555555555555 334455544 55666666665555543 234455
Q ss_pred hhcCCCCcEEEEeeccCCCCCCChh
Q 042869 491 LNNLSKLTSLEILIQDEKALPRDLS 515 (707)
Q Consensus 491 l~~l~~L~~L~l~~~~~~~~p~~l~ 515 (707)
++.+.+|++|+|.+|....+|..+.
T Consensus 169 ig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHHHHhcccceeeecChhhh
Confidence 6666666666666666666665553
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=6.6e-17 Score=137.10 Aligned_cols=157 Identities=25% Similarity=0.406 Sum_probs=140.4
Q ss_pred CCCccccccceEEeccCCCCCC-CCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCC
Q 042869 313 WPDKDTLKVCTAISLNNSNISE-PPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNL 391 (707)
Q Consensus 313 ~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 391 (707)
.+..-.++.+++|.+++|.+.. +|.+..+.+|++|++++|.+.++|.. ++.+++||.|+++-|.+..+|..||.++-|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchh
Confidence 3444556788899999999866 56667999999999999999999987 699999999999999999999999999999
Q ss_pred CEEEecCCCCCC---cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccC
Q 042869 392 QTLSLENCKLGD---MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGE 468 (707)
Q Consensus 392 ~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 468 (707)
++|||.+|.+.+ |..+..+..|+.|+++.|.+.-+|.+++++++||.|.+++ +.+-.+|.+ ++.|+.|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhccc
Confidence 999999999887 6788888999999999999999999999999999999999 456678987 89999999999999
Q ss_pred CCcc
Q 042869 469 SPIE 472 (707)
Q Consensus 469 ~~~~ 472 (707)
|.+.
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 9875
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.5e-13 Score=148.95 Aligned_cols=254 Identities=20% Similarity=0.182 Sum_probs=174.4
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLG 402 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 402 (707)
..|++.++.+..+|... .++|+.|.+.+|.+..+|. ..++|++|++++|.++.+|.. .++|+.|++++|.++
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 45778888877766533 2578888888888888774 257889999999888888753 357888888888877
Q ss_pred CcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccc
Q 042869 403 DMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGE 482 (707)
Q Consensus 403 ~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 482 (707)
..+. ...+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|.+.+|.+..
T Consensus 276 ~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~--------- 336 (788)
T PRK15387 276 HLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS--------- 336 (788)
T ss_pred hhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc---------
Confidence 6332 235688888888888888753 477888888885 45566641 2456777787776531
Q ss_pred cccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHH
Q 042869 483 RRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQ 562 (707)
Q Consensus 483 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 562 (707)
++ .+ ..+|+.|++++|....+|... .+|+.|.++.+.... .+. .
T Consensus 337 ----LP-~l--p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~----------------------LP~----l 380 (788)
T PRK15387 337 ----LP-TL--PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTS----------------------LPA----L 380 (788)
T ss_pred ----cc-cc--ccccceEecCCCccCCCCCCC---cccceehhhcccccc----------------------Ccc----c
Confidence 11 01 147888888888888777543 456666554433211 111 1
Q ss_pred hcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhh
Q 042869 563 LKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVI 642 (707)
Q Consensus 563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~ 642 (707)
..+|+.|+++++ .++.++. ..++|+.|+++++ .++.++. .+.+|+.|++.+ ++++.+|..
T Consensus 381 ~~~L~~LdLs~N-~Lt~LP~---------l~s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~-NqLt~LP~s-- 440 (788)
T PRK15387 381 PSGLKELIVSGN-RLTSLPV---------LPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYR-NQLTRLPES-- 440 (788)
T ss_pred ccccceEEecCC-cccCCCC---------cccCCCEEEccCC-cCCCCCc------chhhhhhhhhcc-CcccccChH--
Confidence 356888898775 3554432 2568999999985 5777632 235788899988 688888643
Q ss_pred hccCCCCcEEEEccCcc
Q 042869 643 GRGLQQLQSVKVSSCQN 659 (707)
Q Consensus 643 ~~~l~~L~~L~i~~C~~ 659 (707)
+..+++|+.|++++++-
T Consensus 441 l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 441 LIHLSSETTVNLEGNPL 457 (788)
T ss_pred HhhccCCCeEECCCCCC
Confidence 46789999999999853
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.6e-13 Score=149.83 Aligned_cols=224 Identities=19% Similarity=0.171 Sum_probs=111.8
Q ss_pred CccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCC
Q 042869 367 ELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCS 445 (707)
Q Consensus 367 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 445 (707)
.|+.|++++|.+..+|..+. .+|++|++++|.++. |..+ ..+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N- 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLDLFHN- 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEECcCC-
Confidence 34444444444444444332 244555555444443 2111 1245555555555555554432 34555555542
Q ss_pred CCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEE
Q 042869 446 KLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRI 525 (707)
Q Consensus 446 ~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l 525 (707)
.+..+|.. +. .+|+.|++++|.+.. .+..+. ++|+.|++++|....+|..+ .++|+.|.+
T Consensus 273 ~L~~LP~~-l~--~sL~~L~Ls~N~Lt~-------------LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~L 332 (754)
T PRK15370 273 KISCLPEN-LP--EELRYLSVYDNSIRT-------------LPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEA 332 (754)
T ss_pred ccCccccc-cC--CCCcEEECCCCcccc-------------Ccccch--hhHHHHHhcCCccccCCccc--cccceeccc
Confidence 33344443 11 345555555554321 000111 24555555555555555433 245555555
Q ss_pred EecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCcc
Q 042869 526 LIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLR 605 (707)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 605 (707)
..+.... .+.. ..++|+.|+++++. ++.++.. ..++|+.|++++|
T Consensus 333 s~N~Lt~----------------------LP~~---l~~sL~~L~Ls~N~-L~~LP~~--------lp~~L~~LdLs~N- 377 (754)
T PRK15370 333 GENALTS----------------------LPAS---LPPELQVLDVSKNQ-ITVLPET--------LPPTITTLDVSRN- 377 (754)
T ss_pred cCCcccc----------------------CChh---hcCcccEEECCCCC-CCcCChh--------hcCCcCEEECCCC-
Confidence 4332111 1111 13577888887753 4444322 1468899999886
Q ss_pred ccccccccccccccCCCcCEEEeccCCCcccccch--hhhccCCCCcEEEEccCc
Q 042869 606 NLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPL--VIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 606 ~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~--~~~~~l~~L~~L~i~~C~ 658 (707)
.+..++. .. ...|+.|++.+ +++..+|.. .....++++..|++.+.+
T Consensus 378 ~Lt~LP~---~l--~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 378 ALTNLPE---NL--PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCCCCCH---hH--HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 5666632 11 24688888888 577777531 122345788888888765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.9e-12 Score=142.08 Aligned_cols=248 Identities=20% Similarity=0.157 Sum_probs=177.7
Q ss_pred ccCCCCccccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccC
Q 042869 310 LTSWPDKDTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQ 389 (707)
Q Consensus 310 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 389 (707)
+...|. .....++.|.+.+|.+..+|.. .++|+.|++++|.+..+|.. .++|+.|++++|.+..+|... .
T Consensus 213 LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp---~ 282 (788)
T PRK15387 213 LTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPALP---S 282 (788)
T ss_pred CCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhch---h
Confidence 334443 2345789999999999888864 58999999999999988752 578999999999998888633 5
Q ss_pred CCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 390 NLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 390 ~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
+|+.|++++|+++..+. .+++|++|++++|++..+|.. ..+|+.|++++| .++.+|. + ..+|+.|++++|
T Consensus 283 ~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N 352 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDN 352 (788)
T ss_pred hcCEEECcCCccccccc--cccccceeECCCCccccCCCC---cccccccccccC-ccccccc--c--ccccceEecCCC
Confidence 78899999999887433 357899999999999988753 346888889885 4566775 2 258999999999
Q ss_pred CcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecC
Q 042869 470 PIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTN 549 (707)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~ 549 (707)
.+... +. ..++|+.|++++|....+|... .+|+.|.++.+.....+.
T Consensus 353 ~Ls~L-------------P~---lp~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~-------------- 399 (788)
T PRK15387 353 QLASL-------------PT---LPSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPV-------------- 399 (788)
T ss_pred ccCCC-------------CC---CCcccceehhhccccccCcccc---cccceEEecCCcccCCCC--------------
Confidence 87521 11 1247888999999988888643 578888886654332111
Q ss_pred CcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEec
Q 042869 550 GANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVE 629 (707)
Q Consensus 550 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~ 629 (707)
..++|+.|+++++. ++.++. .+++|+.|+++++ .++.+ |.....+++|+.|++.
T Consensus 400 ------------l~s~L~~LdLS~N~-LssIP~---------l~~~L~~L~Ls~N-qLt~L---P~sl~~L~~L~~LdLs 453 (788)
T PRK15387 400 ------------LPSELKELMVSGNR-LTSLPM---------LPSGLLSLSVYRN-QLTRL---PESLIHLSSETTVNLE 453 (788)
T ss_pred ------------cccCCCEEEccCCc-CCCCCc---------chhhhhhhhhccC-ccccc---ChHHhhccCCCeEECC
Confidence 12467778887753 444432 1456777888773 56666 3445667888888888
Q ss_pred cCCCcccc
Q 042869 630 RCDKLKKV 637 (707)
Q Consensus 630 ~C~~L~~l 637 (707)
++ .+...
T Consensus 454 ~N-~Ls~~ 460 (788)
T PRK15387 454 GN-PLSER 460 (788)
T ss_pred CC-CCCch
Confidence 74 45543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.6e-12 Score=143.72 Aligned_cols=175 Identities=19% Similarity=0.272 Sum_probs=97.8
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLG 402 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 402 (707)
..|.+.++.+..+|... .++|+.|++++|.+..+|..++ ++|++|++++|.+..+|..+. .+|+.|+|++|.+.
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccC
Confidence 44555555555544322 2456666666666666665442 366677777766666665443 35667777776665
Q ss_pred C-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccccccc
Q 042869 403 D-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDG 481 (707)
Q Consensus 403 ~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 481 (707)
. |..+. .+|++|++++|++..+|..+. .+|+.|++++| .+..+|.. +. ++|+.|++++|.+..
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-------- 318 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA-------- 318 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc--------
Confidence 5 33332 356677777666666665443 46677777664 34455543 21 356666666665431
Q ss_pred ccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEec
Q 042869 482 ERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIG 528 (707)
Q Consensus 482 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~ 528 (707)
.+..+ .++|+.|++++|....+|..+. ++|+.|.++.+
T Consensus 319 -----LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 319 -----LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKN 356 (754)
T ss_pred -----CCccc--cccceeccccCCccccCChhhc--CcccEEECCCC
Confidence 11111 1456666666666666665442 45666666544
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=6.2e-12 Score=141.28 Aligned_cols=320 Identities=21% Similarity=0.251 Sum_probs=216.8
Q ss_pred CCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCC--cccCCcc-ccccCCCCEEEecCCC-CCC-cccc
Q 042869 333 SEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMY--LLALPSS-LGLLQNLQTLSLENCK-LGD-MAII 407 (707)
Q Consensus 333 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~-i~~l~~L~~L~l~~~~-~~~-~~~i 407 (707)
...|........|...+.++.+..++.. ...+.|+.|-+.++. +..++.. |..++.|++|||++|. +.. |..|
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 3355556667888888888887777654 345689999999886 5556544 7789999999999987 455 8999
Q ss_pred cCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccccccccccccc
Q 042869 408 GDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNAS 487 (707)
Q Consensus 408 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 487 (707)
++|-+|++|+++++.+.++|.++++|++|.+|++..+..+..+|. +...|++|++|.+...... .....
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~----------~~~~~ 660 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS----------NDKLL 660 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc----------cchhh
Confidence 999999999999999999999999999999999998887777765 4677999999999765421 23445
Q ss_pred HHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccc
Q 042869 488 LDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIE 567 (707)
Q Consensus 488 ~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~ 567 (707)
+.++..+.+|+.|.+..... .+-..+..++.|.++...... . +............+++|+
T Consensus 661 l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~------------------~-~~~~~~~~~~~~~l~~L~ 720 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI------------------E-GCSKRTLISSLGSLGNLE 720 (889)
T ss_pred HHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh------------------c-ccccceeecccccccCcc
Confidence 66777777887777754443 222223344444433221110 0 011112222344689999
Q ss_pred eEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCC
Q 042869 568 DLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQ 647 (707)
Q Consensus 568 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~ 647 (707)
.|.+.+|...+..............|+++..+.+.+|..++.. .+....|+|+.|.+.+|+.++.+.+. ...+.
T Consensus 721 ~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l----~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~ 794 (889)
T KOG4658|consen 721 ELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL----TWLLFAPHLTSLSLVSCRLLEDIIPK--LKALL 794 (889)
T ss_pred eEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc----chhhccCcccEEEEecccccccCCCH--HHHhh
Confidence 9999998875543211111111113888888888899888775 33345789999999999999887553 23333
Q ss_pred CCc----------EE-EEccCcchhhhhcccccccccCCCCCcceeecccceeeccCccccccccccc
Q 042869 648 QLQ----------SV-KVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLTSFCILK 704 (707)
Q Consensus 648 ~L~----------~L-~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~i~~~~ 704 (707)
.++ .+ .+.+-+.+.++... -..++.|+.+.+.+||+|.++|...
T Consensus 795 ~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~-------------~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 795 ELKELILPFNKLEGLRMLCSLGGLPQLYWL-------------PLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred hcccEEecccccccceeeecCCCCceeEec-------------ccCccchhheehhcCcccccCcccc
Confidence 333 33 23333333222221 1245669999999999999999764
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=1.8e-11 Score=125.78 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=46.9
Q ss_pred hcccceEeecCCCCcchhhh-hcccCcccccccccceeeccCcccccccccccccc---ccCCCcCEEEeccCCCccccc
Q 042869 563 LKGIEDLTLDGLPDIKNILC-ELGREARTTAFSLLESLFLRDLRNLEEICRGPLTA---ESFCKLKTIEVERCDKLKKVF 638 (707)
Q Consensus 563 l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~i~~C~~L~~l~ 638 (707)
+++|+.|++++|. ++.... .+.. ....+++|+.|++++|. +.......+.. ...+.|++|++.+| +++...
T Consensus 192 ~~~L~~L~L~~n~-i~~~~~~~l~~--~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~ 266 (319)
T cd00116 192 NCNLEVLDLNNNG-LTDEGASALAE--TLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN-DITDDG 266 (319)
T ss_pred CCCCCEEeccCCc-cChHHHHHHHH--HhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHH
Confidence 3577777777653 222211 1100 22346778888888753 33211000000 02368888888886 443211
Q ss_pred c---hhhhccCCCCcEEEEccCc
Q 042869 639 P---LVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 639 ~---~~~~~~l~~L~~L~i~~C~ 658 (707)
. ......+++|+.++++++.
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCC
Confidence 1 1123455788888888863
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=1.4e-11 Score=119.02 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=103.5
Q ss_pred eeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCC-Cch
Q 042869 348 CIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRG-SNM 423 (707)
Q Consensus 348 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~-~~l 423 (707)
+.++.....+|.++ -..-..++|..|.|+.+|+ .|+.+++||.|||+.|.|+. |..+..+..|..|-+.+ |++
T Consensus 52 dCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33444555555442 2245678889999999875 57889999999999999877 67888888888887777 788
Q ss_pred hhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEE
Q 042869 424 QKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEI 502 (707)
Q Consensus 424 ~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 502 (707)
+.+|.. ++.|..|+.|.+.- ..+..++...+..|++|..|.+.+|.++.... ..+..+..++.+++
T Consensus 129 ~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~------------~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICK------------GTFQGLAAIKTLHL 195 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhcc------------ccccchhccchHhh
Confidence 888854 67888888888776 45566676678888999888888887642211 13556667777776
Q ss_pred eecc
Q 042869 503 LIQD 506 (707)
Q Consensus 503 ~~~~ 506 (707)
..|.
T Consensus 196 A~np 199 (498)
T KOG4237|consen 196 AQNP 199 (498)
T ss_pred hcCc
Confidence 6554
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=3.2e-12 Score=123.38 Aligned_cols=277 Identities=19% Similarity=0.269 Sum_probs=167.7
Q ss_pred CccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecC-CCCCCc--ccccCCCCCcEEE
Q 042869 342 PQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLEN-CKLGDM--AIIGDLKKLEILT 417 (707)
Q Consensus 342 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~~~~~--~~i~~l~~L~~L~ 417 (707)
+.-..+.+..|.+..+|+..|+.+++||.|||++|.|+.+ |+.|..+.+|-.|-+-+ |+|++. ..++.|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456678899999999999999999999999999999995 88899999887776666 889883 6788999999999
Q ss_pred cCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc------ccccccccccccccccHHH
Q 042869 418 LRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI------EWGKVGGVDGERRNASLDE 490 (707)
Q Consensus 418 l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~~~~~~~~ 490 (707)
+.-|++..++ ..+..|++|..|.+.+ +.+..++...+..+.+++.+.+..+.. .|..... ...+-+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~------a~~~ie 219 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL------AMNPIE 219 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHH------hhchhh
Confidence 9888887655 5678899999999988 566777775578888888888766552 2221100 000001
Q ss_pred hhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEe
Q 042869 491 LNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLT 570 (707)
Q Consensus 491 l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 570 (707)
++.........+......+.+..- ....++.+. .++..........|...+..+++|+.|+
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~k-f~c~~esl~------------------s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARK-FLCSLESLP------------------SRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred cccceecchHHHHHHHhcccchhh-hhhhHHhHH------------------HhhccccCcCCcChHHHHhhcccceEec
Confidence 111111111111111111111100 000001000 0000000112223333456778888888
Q ss_pred ecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCc
Q 042869 571 LDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQ 650 (707)
Q Consensus 571 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~ 650 (707)
+++ ..++.+... .+.....+++|.+.. +.++.+..+.+ ..+..|+.|++++ ++++.+.|. .++.+.+|.
T Consensus 281 lsn-N~i~~i~~~-----aFe~~a~l~eL~L~~-N~l~~v~~~~f--~~ls~L~tL~L~~-N~it~~~~~-aF~~~~~l~ 349 (498)
T KOG4237|consen 281 LSN-NKITRIEDG-----AFEGAAELQELYLTR-NKLEFVSSGMF--QGLSGLKTLSLYD-NQITTVAPG-AFQTLFSLS 349 (498)
T ss_pred cCC-Cccchhhhh-----hhcchhhhhhhhcCc-chHHHHHHHhh--hccccceeeeecC-CeeEEEecc-cccccceee
Confidence 877 345555332 223366777777766 35665543333 3467777778877 677776553 335566677
Q ss_pred EEEEc
Q 042869 651 SVKVS 655 (707)
Q Consensus 651 ~L~i~ 655 (707)
+|++-
T Consensus 350 ~l~l~ 354 (498)
T KOG4237|consen 350 TLNLL 354 (498)
T ss_pred eeehc
Confidence 77764
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=3.5e-11 Score=123.59 Aligned_cols=91 Identities=16% Similarity=0.039 Sum_probs=44.0
Q ss_pred HhcccceEeecCCCCcchhhh-hcccCcccccccccceeeccCcccccccc--ccccccccCCCcCEEEeccCCCccccc
Q 042869 562 QLKGIEDLTLDGLPDIKNILC-ELGREARTTAFSLLESLFLRDLRNLEEIC--RGPLTAESFCKLKTIEVERCDKLKKVF 638 (707)
Q Consensus 562 ~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~L~~L~i~~C~~L~~l~ 638 (707)
.+++|+.|++++++ ++.... .+.. ......+.|+.|++++| .++... ........+++|+.+++.++ .+..-+
T Consensus 219 ~~~~L~~L~ls~n~-l~~~~~~~l~~-~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~ 294 (319)
T cd00116 219 SLKSLEVLNLGDNN-LTDAGAAALAS-ALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEG 294 (319)
T ss_pred ccCCCCEEecCCCc-CchHHHHHHHH-HHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHH
Confidence 45677777777754 332111 1100 00012468888888876 332110 00112234578888888884 554331
Q ss_pred chh---hhccC-CCCcEEEEcc
Q 042869 639 PLV---IGRGL-QQLQSVKVSS 656 (707)
Q Consensus 639 ~~~---~~~~l-~~L~~L~i~~ 656 (707)
... ..... +.|++|+|.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCC
Confidence 111 12233 5666666654
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=4.2e-09 Score=124.31 Aligned_cols=264 Identities=14% Similarity=0.175 Sum_probs=158.2
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhchhhhhc-------------chhhHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGLELAEQ-------------SHETVRAGRLL 66 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-------------~~~~~~~~~~~ 66 (707)
.+|.||||++..+..+ ++.++|+++... .++..+...++..++...... .........+.
T Consensus 40 paG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (903)
T PRK04841 40 PAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLF 113 (903)
T ss_pred CCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHH
Confidence 3799999999998742 336889998654 466777777777774321111 00112333444
Q ss_pred HHHhc-CCcEEEEEeCCCCcc--ccc-ccccccCCCCCCeEEEEeeCCcccccc-c-cCCcceEEee----cCChHHHHH
Q 042869 67 ERLKK-EPKILIILDDIWGSL--DLE-AIGIPFADNNSGCKVLLTARSQDVLSC-K-MDCQQNFFVD----VLNEKEAWS 136 (707)
Q Consensus 67 ~~l~~-~kr~LlVlDdv~~~~--~~~-~l~~~l~~~~~gs~iivTtr~~~v~~~-~-~~~~~~~~l~----~L~~~~a~~ 136 (707)
..+.. +.+++||+||+...+ ... .+..-+.....+-++|||||...-... . .......++. +|+.+|+.+
T Consensus 114 ~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ 193 (903)
T PRK04841 114 IELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQ 193 (903)
T ss_pred HHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHH
Confidence 55543 568999999997542 122 222222223456788899998432210 0 0112345565 899999999
Q ss_pred HHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhhccCCCccccccceeee-eeec
Q 042869 137 LFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLERTFLRSFSGTQAVAAYSTI-ELSY 215 (707)
Q Consensus 137 Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l-~~sy 215 (707)
+|....+.... .+...+|.+.++|.|+++..++..+...... .......+. .. ....+...+ ...+
T Consensus 194 ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~----~~----~~~~~~~~l~~~v~ 260 (903)
T PRK04841 194 FFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLA----GI----NASHLSDYLVEEVL 260 (903)
T ss_pred HHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhc----CC----CchhHHHHHHHHHH
Confidence 99877654322 2347789999999999999998877543210 000111110 00 011122222 2236
Q ss_pred ccCChHHHHHHHHHhccccccchhhhHHhhhcccccccchhHHHHHHHHHHHHHHHhhhccccc-C-CcccceehhHHHH
Q 042869 216 YQLEGEELRQTFLLIGYTFISCVKDVIYYGMGLGLFQNINTLEEARDRAHTLIDKLKNSCLLLD-G-WRSEWFSMHDVVR 293 (707)
Q Consensus 216 ~~L~~~~lk~~fl~~~~fp~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~-~~~~~~~mHdli~ 293 (707)
..||++ .+..+...|+++.++.+ +.....+ . ......++++.+.+++.. . +...+|+.|++++
T Consensus 261 ~~l~~~-~~~~l~~~a~~~~~~~~-l~~~l~~-----~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r 325 (903)
T PRK04841 261 DNVDLE-TRHFLLRCSVLRSMNDA-LIVRVTG-----E--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFA 325 (903)
T ss_pred hcCCHH-HHHHHHHhcccccCCHH-HHHHHcC-----C--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHH
Confidence 789988 79999999999866643 2221111 0 112457888888888643 2 2345788999999
Q ss_pred Hhhcc
Q 042869 294 DVAIS 298 (707)
Q Consensus 294 ~la~~ 298 (707)
++...
T Consensus 326 ~~l~~ 330 (903)
T PRK04841 326 SFLRH 330 (903)
T ss_pred HHHHH
Confidence 99876
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=2.7e-11 Score=122.47 Aligned_cols=185 Identities=24% Similarity=0.282 Sum_probs=152.7
Q ss_pred cccceEEeccCCCCCCCCCCC-CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEec
Q 042869 319 LKVCTAISLNNSNISEPPQGF-ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 397 (707)
.......+++.|.+..+|.-. .+..|..+.++.|.+..+|.. +.++..|.+|+|+.|.++.+|..++.|+ |++|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 344456677888888877544 677888888998888888865 6889999999999999999999988776 8999999
Q ss_pred CCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccc
Q 042869 398 NCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKV 476 (707)
Q Consensus 398 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 476 (707)
+|+++. |..++.+.+|..|+.+.|.+..+|..++.+.+|+.|+++. +.+..+|.+ +..| .|..|++++|++
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNki----- 223 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKI----- 223 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCce-----
Confidence 999887 7889988999999999999999999999999999999988 566777876 5544 488999999876
Q ss_pred cccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccce
Q 042869 477 GGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQ 521 (707)
Q Consensus 477 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~ 521 (707)
..++..+.+|+.|++|-+.+|+...-|..|.....+.
T Consensus 224 --------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 224 --------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVH 260 (722)
T ss_pred --------eecchhhhhhhhheeeeeccCCCCCChHHHHhcccee
Confidence 4566778999999999999999988888875544443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=7.4e-10 Score=99.49 Aligned_cols=129 Identities=25% Similarity=0.346 Sum_probs=41.6
Q ss_pred cCCCCccEEEecCCCcccCCcccc-ccCCCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhhchHHh-hcCcCCCEEc
Q 042869 363 TGMTELRVLDFTQMYLLALPSSLG-LLQNLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEI-GRLTQLRLLD 440 (707)
Q Consensus 363 ~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 440 (707)
.+...++.|++.++.|+.+. .++ .+.+|+.|++++|.++....+..+++|++|++++|.++.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34445677777777766653 344 46677777777777777666777777777777777777665444 3567777777
Q ss_pred CCCCCCCcccch-hhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEE
Q 042869 441 LSNCSKLKVIPA-YVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEI 502 (707)
Q Consensus 441 l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 502 (707)
+++|. +..+.. ..+..+++|+.|++.+|++.- ...-....+..+|+|+.|+-
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~---------~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE---------KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG---------STTHHHHHHHH-TT-SEETT
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccc---------hhhHHHHHHHHcChhheeCC
Confidence 77643 333221 125667777777777776531 11222334556677776653
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.4e-10 Score=108.02 Aligned_cols=134 Identities=21% Similarity=0.315 Sum_probs=114.4
Q ss_pred CCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCC
Q 042869 365 MTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNC 444 (707)
Q Consensus 365 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 444 (707)
-+.|..||+++|.|+.+-.++.-++.+|.|+++.|.+....++..+++|+.||+++|.+.++..+-.++.|.++|.+.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 4578999999999999999999999999999999999998889999999999999999888776667889999999998
Q ss_pred CCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCC
Q 042869 445 SKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPR 512 (707)
Q Consensus 445 ~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~ 512 (707)
+.+..+.. +++|-+|..|++.+|.++ .-.....++++|.|+.|.+.+|+....|+
T Consensus 362 N~iE~LSG--L~KLYSLvnLDl~~N~Ie-----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIETLSG--LRKLYSLVNLDLSSNQIE-----------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhhhh--hHhhhhheeccccccchh-----------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 45566555 788999999999999875 12334568899999999999998776665
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=1.3e-09 Score=97.97 Aligned_cols=100 Identities=25% Similarity=0.384 Sum_probs=21.7
Q ss_pred ceEEeccCCCCCCCCCCC-CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccc-cccCCCCEEEecCC
Q 042869 322 CTAISLNNSNISEPPQGF-ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSL-GLLQNLQTLSLENC 399 (707)
Q Consensus 322 ~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~l~~~ 399 (707)
.+.|++.++.+..+.... .+.+|+.|++++|.+..+.. +..++.|++|++++|.++.++..+ ..+++|+.|++++|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 344555555444443333 34444444444444444432 344444444444444444443332 23444444444444
Q ss_pred CCCC---cccccCCCCCcEEEcCCCch
Q 042869 400 KLGD---MAIIGDLKKLEILTLRGSNM 423 (707)
Q Consensus 400 ~~~~---~~~i~~l~~L~~L~l~~~~l 423 (707)
++.+ ...+..+++|++|++.+|.+
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 4333 22333444444444444443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=4.7e-11 Score=120.78 Aligned_cols=190 Identities=22% Similarity=0.340 Sum_probs=157.4
Q ss_pred EEeccCCCCCCCCCC---CCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCC
Q 042869 324 AISLNNSNISEPPQG---FECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 324 ~l~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 400 (707)
++.+++-..+..|-. ..+..-...+++.|....+|.. ++.|-.|..+.+..|.+..+|..++++..|.+|+|+.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 344444444443322 2445556678888998888876 577889999999999999999999999999999999999
Q ss_pred CCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccccc
Q 042869 401 LGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGV 479 (707)
Q Consensus 401 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 479 (707)
++. |..++.|+ |+.|-+++|+++.+|.+++.+..|.+|+.+. +.+..+|.. ++.+.+|+.|.+..|.+
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l-------- 201 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHL-------- 201 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhh--------
Confidence 888 67777765 8999999999999999999999999999998 456777876 88999999999988876
Q ss_pred ccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEeccee
Q 042869 480 DGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWW 531 (707)
Q Consensus 480 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~ 531 (707)
...++++..+ .|..|++++|.+..+|..+..|.+|+.|.+.+++..
T Consensus 202 -----~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 202 -----EDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -----hhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 4566777744 688999999999999999999999999999877643
No 32
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.89 E-value=1.1e-07 Score=94.70 Aligned_cols=187 Identities=16% Similarity=0.199 Sum_probs=112.2
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHH----HHHHHhcCCcEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGR----LLERLKKEPKIL 76 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~~~~l~~~kr~L 76 (707)
.+|+||||+++.+++...... + .++|+ +....+..+++..++..++.+..... ....... +......+++.+
T Consensus 51 ~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~v 126 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRD-KAALLRELEDFLIEQFAAGKRAL 126 (269)
T ss_pred CCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHHhCCCCeE
Confidence 379999999999998765321 1 12233 33345778899999988877543222 2222222 233334567899
Q ss_pred EEEeCCCCcc--ccccccccc---CCCCCCeEEEEeeCCcccc--c------cccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 77 IILDDIWGSL--DLEAIGIPF---ADNNSGCKVLLTARSQDVL--S------CKMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 77 lVlDdv~~~~--~~~~l~~~l---~~~~~gs~iivTtr~~~v~--~------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
+|+||++... .++.+.... ........|++|....-.. . ........+.+++++.+|..+++...+.
T Consensus 127 liiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 127 LVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred EEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 9999998753 344332111 1112233455555432110 0 0011134678999999999999887664
Q ss_pred CC---CCCchhHHHHHHHHHHcCCcchHHHHHHHHhc------c---CChhHHHHHHHHH
Q 042869 144 DC---RENGELKSVAAEIVKECAGLPIAIVPIAKALK------N---KSPYEWRNALRQL 191 (707)
Q Consensus 144 ~~---~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~------~---~~~~~w~~~l~~l 191 (707)
.. ....-..+....|++.++|.|..|..++..+- + .+.+.++.++..+
T Consensus 207 ~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 207 RAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 21 11223357899999999999999999988762 1 1455566555553
No 33
>PF05729 NACHT: NACHT domain
Probab=98.84 E-value=1.4e-08 Score=93.06 Aligned_cols=135 Identities=19% Similarity=0.289 Sum_probs=84.1
Q ss_pred CCCcHHHHHHHHHHHhhhccC----CCcEEEEEecCCcCHH---HHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCc
Q 042869 2 GGIGKTTLVKEVGRQVKENNL----FEKVISSRVSQTPQIK---NIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPK 74 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr 74 (707)
+|+||||+++.++.+...... +...+|++.+...... .+...|..+......... ..........++
T Consensus 9 ~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~ 82 (166)
T PF05729_consen 9 PGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE------ELLQELLEKNKR 82 (166)
T ss_pred CCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH------HHHHHHHHcCCc
Confidence 799999999999998776543 3456677665543322 344444333322211111 122233334579
Q ss_pred EEEEEeCCCCccc---------ccccccccCCC--CCCeEEEEeeCCccc--cccccCCcceEEeecCChHHHHHHHHhh
Q 042869 75 ILIILDDIWGSLD---------LEAIGIPFADN--NSGCKVLLTARSQDV--LSCKMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 75 ~LlVlDdv~~~~~---------~~~l~~~l~~~--~~gs~iivTtr~~~v--~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
++||+|++++... +..+...+... .++.+++||+|.... ..........+++++|++++..+++++.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 9999999986532 22222222222 468999999999776 2223344468999999999999998775
Q ss_pred h
Q 042869 142 T 142 (707)
Q Consensus 142 ~ 142 (707)
.
T Consensus 163 f 163 (166)
T PF05729_consen 163 F 163 (166)
T ss_pred h
Confidence 4
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.84 E-value=9.4e-08 Score=102.56 Aligned_cols=261 Identities=17% Similarity=0.160 Sum_probs=163.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchhhhhcchhhH-------------HHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLELAEQSHETV-------------RAGRLLE 67 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~-------------~~~~~~~ 67 (707)
+|.||||++.+...... .=..+.|.+.++.. ++..+.+.++..++...+...++.. ....+..
T Consensus 46 AGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~ 122 (894)
T COG2909 46 AGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLN 122 (894)
T ss_pred CCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHH
Confidence 69999999999987222 24568899987654 6889999999988754444432222 2333444
Q ss_pred HHhc-CCcEEEEEeCCCCc--cccc-ccccccCCCCCCeEEEEeeCCccccc--cccCCcceEEee----cCChHHHHHH
Q 042869 68 RLKK-EPKILIILDDIWGS--LDLE-AIGIPFADNNSGCKVLLTARSQDVLS--CKMDCQQNFFVD----VLNEKEAWSL 137 (707)
Q Consensus 68 ~l~~-~kr~LlVlDdv~~~--~~~~-~l~~~l~~~~~gs~iivTtr~~~v~~--~~~~~~~~~~l~----~L~~~~a~~L 137 (707)
.+.+ .++..+||||.--. .... .+..-+.....+-..|||||.+.-.. ...-.....++. .|+.+|+.++
T Consensus 123 Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~f 202 (894)
T COG2909 123 ELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAF 202 (894)
T ss_pred HHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHH
Confidence 4332 35789999997432 1222 22222333445789999999975321 000112233443 4889999999
Q ss_pred HHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhc-cCChhHHHHHHHH----HHHhhccCCCccccccceeeee
Q 042869 138 FKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKALK-NKSPYEWRNALRQ----LERTFLRSFSGTQAVAAYSTIE 212 (707)
Q Consensus 138 f~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~-~~~~~~w~~~l~~----l~~~~~~~~~~~~~~~~~~~l~ 212 (707)
|....+-.-+. .-...+.+...|=+-|+..++-.++ +.+.+.-...++- +..... .
T Consensus 203 l~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~---------------e 263 (894)
T COG2909 203 LNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLV---------------E 263 (894)
T ss_pred HHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHH---------------H
Confidence 98876433222 3367788888999999999888887 3344433332221 111111 1
Q ss_pred eecccCChHHHHHHHHHhccccccchhhhHHhhhcccccccchhHHHHHHHHHHHHHHHhhhcccc--cCCcccceehhH
Q 042869 213 LSYYQLEGEELRQTFLLIGYTFISCVKDVIYYGMGLGLFQNINTLEEARDRAHTLIDKLKNSCLLL--DGWRSEWFSMHD 290 (707)
Q Consensus 213 ~sy~~L~~~~lk~~fl~~~~fp~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~--~~~~~~~~~mHd 290 (707)
--++.||++ ++..++-+|+++.+..+- +.... -++.+..++++|.+++++. -.+...+|+.|.
T Consensus 264 eVld~Lp~~-l~~FLl~~svl~~f~~eL-~~~Lt-------------g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~ 328 (894)
T COG2909 264 EVLDRLPPE-LRDFLLQTSVLSRFNDEL-CNALT-------------GEENGQAMLEELERRGLFLQRLDDEGQWFRYHH 328 (894)
T ss_pred HHHhcCCHH-HHHHHHHHHhHHHhhHHH-HHHHh-------------cCCcHHHHHHHHHhCCCceeeecCCCceeehhH
Confidence 124778888 899988999886444321 11111 1223456799999999876 346678999999
Q ss_pred HHHHhhccc
Q 042869 291 VVRDVAISH 299 (707)
Q Consensus 291 li~~la~~~ 299 (707)
++.+|-..+
T Consensus 329 LFaeFL~~r 337 (894)
T COG2909 329 LFAEFLRQR 337 (894)
T ss_pred HHHHHHHhh
Confidence 999998773
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=5.9e-10 Score=103.93 Aligned_cols=129 Identities=23% Similarity=0.299 Sum_probs=110.1
Q ss_pred ccccccceEEeccCCCCCCCCCCC-CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEE
Q 042869 316 KDTLKVCTAISLNNSNISEPPQGF-ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTL 394 (707)
Q Consensus 316 ~~~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 394 (707)
.+.|+.+..+++++|.+..+.+.. -.|.+|+|++++|.+..+.. +..+++|..||+++|.+.++..+--++-|++.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 456788899999999988877665 56899999999998887654 677999999999999998888777888899999
Q ss_pred EecCCCCCCcccccCCCCCcEEEcCCCchhhch--HHhhcCcCCCEEcCCCCCC
Q 042869 395 SLENCKLGDMAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLSNCSK 446 (707)
Q Consensus 395 ~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~ 446 (707)
.|.+|.+...+.++++.+|.+||+++|++..+. ..||+++.|+++.+.+|+.
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 999999999999999999999999999887664 5688999999998888654
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=4e-09 Score=111.51 Aligned_cols=190 Identities=26% Similarity=0.350 Sum_probs=137.2
Q ss_pred EeccCCCC-CCCCCCCCCCccceeeeccccccccCchhhcCCC-CccEEEecCCCcccCCccccccCCCCEEEecCCCCC
Q 042869 325 ISLNNSNI-SEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMT-ELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLG 402 (707)
Q Consensus 325 l~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 402 (707)
+....+.. .........+.++.|.+.++.+.++++. ...+. +|+.|+++++.+..+|..++.+++|+.|++++|++.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 44444444 3344444557788888888888888764 34453 888888888888888878888888888888888888
Q ss_pred Cc-ccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccccccc
Q 042869 403 DM-AIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDG 481 (707)
Q Consensus 403 ~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 481 (707)
+. ...+.++.|+.|+++++++..+|..++.+..|++|.++.+..... +.. +.++.++..+.+..+.+.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~-~~~~~~l~~l~l~~n~~~--------- 245 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-LSS-LSNLKNLSGLELSNNKLE--------- 245 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec-chh-hhhcccccccccCCceee---------
Confidence 74 444488888888888888888888777777788888887543333 332 677777777776666542
Q ss_pred ccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEeccee
Q 042869 482 ERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWW 531 (707)
Q Consensus 482 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~ 531 (707)
..+..++.+++++.|++++|....++. +..+.+++.|.++.+..+
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----eccchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 224567778888888888888888877 777788888888655443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.6e-09 Score=106.57 Aligned_cols=207 Identities=24% Similarity=0.261 Sum_probs=147.9
Q ss_pred cccccceEEeccCCCCCCCCC---CCCCCccceeeeccccccccC--chhhcCCCCccEEEecCCCcccCCcc--ccccC
Q 042869 317 DTLKVCTAISLNNSNISEPPQ---GFECPQLRFLCIGYHASLRIP--SNFFTGMTELRVLDFTQMYLLALPSS--LGLLQ 389 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~ 389 (707)
...++++.+++.++.+..++. ...|+++|.|+++.|-+..+. ..+...+++|+.|+++.|.+....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 346788899999998887763 448999999999988765432 35567899999999999987653222 24678
Q ss_pred CCCEEEecCCCCCCc---ccccCCCCCcEEEcCCCc-hhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEE
Q 042869 390 NLQTLSLENCKLGDM---AIIGDLKKLEILTLRGSN-MQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELY 465 (707)
Q Consensus 390 ~L~~L~l~~~~~~~~---~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~ 465 (707)
+|+.|.|+.|.++.- ...-.+++|+.|++.+|. +......-..+..|+.|+++++..+..-.....+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 999999999998852 345578999999999984 3222223345788999999997665543223378899999999
Q ss_pred ccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCC--ChhhcccceEEEEEecc
Q 042869 466 IGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPR--DLSFFKMLQRYRILIGY 529 (707)
Q Consensus 466 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~--~l~~~~~L~~L~l~~~~ 529 (707)
+..+.+.-.... ...........++|+.|.+..|++..++. .+..+++|+.|.+.+++
T Consensus 278 ls~tgi~si~~~------d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 278 LSSTGIASIAEP------DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccCcchhcCC------CccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 988876522221 12233445667899999999998866653 45667777777776554
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.3e-09 Score=104.39 Aligned_cols=107 Identities=20% Similarity=0.310 Sum_probs=59.0
Q ss_pred cCCCCccEEEecCCCcccCC--ccccccCCCCEEEecCCCCCCc----ccccCCCCCcEEEcCCCchhhchHH--hhcCc
Q 042869 363 TGMTELRVLDFTQMYLLALP--SSLGLLQNLQTLSLENCKLGDM----AIIGDLKKLEILTLRGSNMQKLVEE--IGRLT 434 (707)
Q Consensus 363 ~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~----~~i~~l~~L~~L~l~~~~l~~lp~~--i~~l~ 434 (707)
+++++||...+.++.+...+ .....|++++.|||+.|-+... .....|++|+.|+++.|.+.....+ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45667777777776665555 2456667777777776665552 2344566666666666655432211 12455
Q ss_pred CCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 435 QLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 435 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
+|+.|.+++|.....--..++...++|+.|++..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 66666666655432222222444566666666555
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.65 E-value=2.7e-09 Score=104.41 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=39.3
Q ss_pred CccEEEecCCCccc---CCccccccCCCCEEEecCCC-CCCc---ccccCCCCCcEEEcCCC-chhhc--hHHhhcCcCC
Q 042869 367 ELRVLDFTQMYLLA---LPSSLGLLQNLQTLSLENCK-LGDM---AIIGDLKKLEILTLRGS-NMQKL--VEEIGRLTQL 436 (707)
Q Consensus 367 ~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~-~~~~---~~i~~l~~L~~L~l~~~-~l~~l--p~~i~~l~~L 436 (707)
.|+.|.++++.-.. +-.....+++++.|++.+|. +++. ..-..+++|++|++..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45556666553222 22233456666666666665 2221 11224555666666554 33321 1122345566
Q ss_pred CEEcCCCCCCCcc
Q 042869 437 RLLDLSNCSKLKV 449 (707)
Q Consensus 437 ~~L~l~~~~~~~~ 449 (707)
.+|+++.|..++.
T Consensus 219 ~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 219 KYLNLSWCPQISG 231 (483)
T ss_pred HHhhhccCchhhc
Confidence 6666665554443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=5.5e-08 Score=102.86 Aligned_cols=177 Identities=29% Similarity=0.385 Sum_probs=144.9
Q ss_pred ccceEEeccCCCCCCCCCCCCCC--ccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEec
Q 042869 320 KVCTAISLNNSNISEPPQGFECP--QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 397 (707)
..+..+.+.++.+..++...... +|+.|++++|.+..+|.. +..+++|+.|++++|.+..+|...+.+.+|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 56888999999998887766554 899999999999998633 688999999999999999999988899999999999
Q ss_pred CCCCCCc-ccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccc
Q 042869 398 NCKLGDM-AIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKV 476 (707)
Q Consensus 398 ~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 476 (707)
+|++... ..+..+.+|++|.+++|.....+..+.++.++..|.+.+ ..+..++.. ++.+++|+.|++.+|.+.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~---- 268 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQIS---- 268 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccccc----
Confidence 9999984 445677779999999997777788889999999999766 444554544 788999999999998764
Q ss_pred cccccccccccHHHhhcCCCCcEEEEeeccCCCCCCC
Q 042869 477 GGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRD 513 (707)
Q Consensus 477 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 513 (707)
....++++.+++.|+++++.....+..
T Consensus 269 ----------~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 ----------SISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ----------ccccccccCccCEEeccCccccccchh
Confidence 112278889999999998876655443
No 41
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.44 E-value=1.1e-05 Score=85.34 Aligned_cols=190 Identities=17% Similarity=0.153 Sum_probs=110.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchh-hhhcc-hhhHHHHHHHHHHhc-CCcEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLE-LAEQS-HETVRAGRLLERLKK-EPKILI 77 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~~~-~~~~~~~~~~~~l~~-~kr~Ll 77 (707)
.+|+|||++++.++++.......-..+++++....+...++..+++++... .+... ........+.+.+.+ ++..+|
T Consensus 63 ~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi 142 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIV 142 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 379999999999999876543233466777777778889999999998752 21111 123344555666553 456899
Q ss_pred EEeCCCCcc------cccccccccCCCCCCeE--EEEeeCCcccccc------ccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 78 ILDDIWGSL------DLEAIGIPFADNNSGCK--VLLTARSQDVLSC------KMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 78 VlDdv~~~~------~~~~l~~~l~~~~~gs~--iivTtr~~~v~~~------~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
|||+++... .+..+...+ ....+++ +|.++....+... ..-....+.+++++.++..+++..++.
T Consensus 143 viDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 143 ALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 999998642 122222211 1122333 5666665443210 011124678999999999999987763
Q ss_pred C-----CCCCchhHHHHHHHHHHcCCcchHHHHHHHHh--c---c---CChhHHHHHHHHH
Q 042869 144 D-----CRENGELKSVAAEIVKECAGLPIAIVPIAKAL--K---N---KSPYEWRNALRQL 191 (707)
Q Consensus 144 ~-----~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l--~---~---~~~~~w~~~l~~l 191 (707)
. ..+.+.++.+++......|..+.|+..+-.+. + + .+.++++.+++.+
T Consensus 222 ~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 222 EGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred hhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2 11222223333333333456777776664332 1 1 1556666666664
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.4e-07 Score=67.35 Aligned_cols=59 Identities=29% Similarity=0.487 Sum_probs=43.7
Q ss_pred CccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCC
Q 042869 342 PQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 342 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 400 (707)
|+|+.|++++|.+..+++..|.++++|++|++++|.+..+| ..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46777777777777777777777777777777777777754 456777777777777765
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=7.1e-07 Score=98.91 Aligned_cols=103 Identities=23% Similarity=0.387 Sum_probs=63.6
Q ss_pred ccEEEecCCCccc-CCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchh-hchHHhhcCcCCCEEcCCC
Q 042869 368 LRVLDFTQMYLLA-LPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSN 443 (707)
Q Consensus 368 L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 443 (707)
++.|+|+++.+.. +|..++.+++|+.|+|++|.+.. |..++.+++|+.|+|++|++. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5666666666654 66666667777777777766654 455666677777777766665 4666666677777777766
Q ss_pred CCCCcccchhhhhCCCCCcEEEccCCC
Q 042869 444 CSKLKVIPAYVISSLSRLEELYIGESP 470 (707)
Q Consensus 444 ~~~~~~~p~~~~~~l~~L~~L~l~~~~ 470 (707)
|...+.+|..+...+.++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 666666665422222344555555543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.7e-08 Score=90.52 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=33.0
Q ss_pred HhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCC
Q 042869 562 QLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCD 632 (707)
Q Consensus 562 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~ 632 (707)
.+|+|.+|+++++..++.-... .+..|+.|+.|.++.|..+. +.......+.|.|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~-----~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQ-----EFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHH-----HHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 4566666666665555442111 22336666666666665442 1112344556666666666653
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.4e-08 Score=91.15 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=58.5
Q ss_pred hcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhh
Q 042869 563 LKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVI 642 (707)
Q Consensus 563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~ 642 (707)
-++|..|+|+|+...-.... +. .-...+|+|..|++++|..++.-. ......|+.|++|.++.|..+ +|..+
T Consensus 285 se~l~~LNlsG~rrnl~~sh-~~--tL~~rcp~l~~LDLSD~v~l~~~~--~~~~~kf~~L~~lSlsRCY~i---~p~~~ 356 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSH-LS--TLVRRCPNLVHLDLSDSVMLKNDC--FQEFFKFNYLQHLSLSRCYDI---IPETL 356 (419)
T ss_pred chhhhhhhhhhhHhhhhhhH-HH--HHHHhCCceeeeccccccccCchH--HHHHHhcchheeeehhhhcCC---ChHHe
Confidence 36778888888753221110 00 012348999999999998887632 223456899999999999544 33222
Q ss_pred --hccCCCCcEEEEccCcc
Q 042869 643 --GRGLQQLQSVKVSSCQN 659 (707)
Q Consensus 643 --~~~l~~L~~L~i~~C~~ 659 (707)
+...|+|.+|++.+|-.
T Consensus 357 ~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeeccCcceEEEEeccccC
Confidence 35679999999999843
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=1.5e-06 Score=96.37 Aligned_cols=109 Identities=19% Similarity=0.324 Sum_probs=91.2
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
.++.|++.++......+..+..+++|+.|++++|.+.. +|..++.+.+|++|+|++|.+.. |..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788898888775444558899999999999999975 89999999999999999999886 6789999999999999
Q ss_pred CCchh-hchHHhhcC-cCCCEEcCCCCCCCcccc
Q 042869 420 GSNMQ-KLVEEIGRL-TQLRLLDLSNCSKLKVIP 451 (707)
Q Consensus 420 ~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~~~p 451 (707)
+|++. .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99887 788887764 577888888876554433
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.28 E-value=5.9e-08 Score=95.26 Aligned_cols=267 Identities=17% Similarity=0.160 Sum_probs=166.5
Q ss_pred CCCCEEEecCCCCCCc----ccccCCCCCcEEEcCCCc-hh--hchHHhhcCcCCCEEcCCCCCCCcccch-hhhhCCCC
Q 042869 389 QNLQTLSLENCKLGDM----AIIGDLKKLEILTLRGSN-MQ--KLVEEIGRLTQLRLLDLSNCSKLKVIPA-YVISSLSR 460 (707)
Q Consensus 389 ~~L~~L~l~~~~~~~~----~~i~~l~~L~~L~l~~~~-l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~ 460 (707)
..|+.|.+++|.-... ....+++++++|++.+|. ++ .+-..-..+++|++|++..|..++...- .+...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3688899999983331 345578999999999984 43 1222335789999999999988877653 24567899
Q ss_pred CcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCCh---hhcccceEEEEEecceeccCCCC
Q 042869 461 LEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDL---SFFKMLQRYRILIGYWWSVGPSD 537 (707)
Q Consensus 461 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l---~~~~~L~~L~l~~~~~~~~~~~~ 537 (707)
|++|++++|..... ..+..-..++..++.+...++.....-..+ .++.-+.++++..|...+
T Consensus 218 L~~lNlSwc~qi~~----------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT----- 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG----------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT----- 282 (483)
T ss_pred HHHhhhccCchhhc----------CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-----
Confidence 99999998875311 222233445555666555544322111000 122222333322221110
Q ss_pred CccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCcccccccccccccc
Q 042869 538 GISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTA 617 (707)
Q Consensus 538 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 617 (707)
......+...+..|+.|..++|..++......-+ ...++|+.|.+..|..+.+...... .
T Consensus 283 ---------------D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l-~ 342 (483)
T KOG4341|consen 283 ---------------DEDLWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTML-G 342 (483)
T ss_pred ---------------chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhh-h
Confidence 0001112235788999999999887776543322 3479999999999988776632222 3
Q ss_pred ccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcccc
Q 042869 618 ESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQL 697 (707)
Q Consensus 618 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L 697 (707)
.+.+.|+.+++.+|.....-.-.....++|.|+.|.++.|..+.+-..-... ........|..+++.+||.+
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~--------~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS--------SSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh--------hccccccccceeeecCCCCc
Confidence 4578999999999977666522334568999999999999877654211000 11125688999999999986
Q ss_pred c
Q 042869 698 T 698 (707)
Q Consensus 698 ~ 698 (707)
.
T Consensus 415 ~ 415 (483)
T KOG4341|consen 415 T 415 (483)
T ss_pred h
Confidence 5
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=9.3e-07 Score=64.97 Aligned_cols=58 Identities=33% Similarity=0.476 Sum_probs=45.0
Q ss_pred CCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCch
Q 042869 366 TELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNM 423 (707)
Q Consensus 366 ~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l 423 (707)
++|++|++++|.+..+| ..+..+++|++|++++|.++. +..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888888888888876 467788888888888888776 35677888888888887753
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=1.7e-07 Score=90.07 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=7.2
Q ss_pred CCCCcEEEEccCc
Q 042869 646 LQQLQSVKVSSCQ 658 (707)
Q Consensus 646 l~~L~~L~i~~C~ 658 (707)
.|.|+.|++++|.
T Consensus 297 k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 297 KPDLEKLNLNGNR 309 (382)
T ss_pred chhhHHhcCCccc
Confidence 4555555555553
No 50
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.20 E-value=3.3e-06 Score=81.17 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=57.0
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC--cCHHHHHHHH-----HHHhchhhhhcchhh-HHHHHHHHHHhcC
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT--PQIKNIQGEI-----AEKIGLELAEQSHET-VRAGRLLERLKKE 72 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~-~~~~~~~~~l~~~ 72 (707)
.+|+|||||++.+|++.... +|+.++|+.+.+. +++.++++++ +.+.+.+........ ............|
T Consensus 24 ~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G 102 (249)
T cd01128 24 PPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHG 102 (249)
T ss_pred CCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 37999999999999988765 8999999997776 7899999999 333333211111011 1122222222357
Q ss_pred CcEEEEEeCCCCc
Q 042869 73 PKILIILDDIWGS 85 (707)
Q Consensus 73 kr~LlVlDdv~~~ 85 (707)
+++++++|++...
T Consensus 103 ~~vll~iDei~r~ 115 (249)
T cd01128 103 KDVVILLDSITRL 115 (249)
T ss_pred CCEEEEEECHHHh
Confidence 8999999999643
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=4.5e-07 Score=87.22 Aligned_cols=70 Identities=14% Similarity=0.002 Sum_probs=36.9
Q ss_pred HhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccc--cccccccccCCCcCEEEeccCCCc
Q 042869 562 QLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEI--CRGPLTAESFCKLKTIEVERCDKL 634 (707)
Q Consensus 562 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~i~~C~~L 634 (707)
.+++|+.|+++.|.- +.-+...........+|+|+.|.+.++. ++.- ..........|.|..|++.+| .+
T Consensus 239 s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred ccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 456777777777642 2211100000022348888888888753 2221 000223445788999999885 44
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=3.6e-08 Score=103.05 Aligned_cols=174 Identities=22% Similarity=0.211 Sum_probs=117.1
Q ss_pred ccccccceEEeccCCCCCCCCCCCCC-Cccceeeecc-------------ccccccCchhhcCCCCccEEEecCCCcccC
Q 042869 316 KDTLKVCTAISLNNSNISEPPQGFEC-PQLRFLCIGY-------------HASLRIPSNFFTGMTELRVLDFTQMYLLAL 381 (707)
Q Consensus 316 ~~~~~~~~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~-------------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 381 (707)
...++.+|+|-+.++++.....+..+ ..|+.|...+ ..+..-|. -..|.+.++++|.+..+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-----Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-----WNKLATASFSYNRLVLM 179 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-----hhhHhhhhcchhhHHhH
Confidence 34567888999988887654332211 2233333321 11111111 12567778888888888
Q ss_pred CccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCC
Q 042869 382 PSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRL 461 (707)
Q Consensus 382 p~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L 461 (707)
-.++.-++.|+.|||++|++.....+..|++|++|||+.|.+..+|.--..=.+|+.|.+++ +.+..+-. +.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g--ie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG--IENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhh--HHhhhhh
Confidence 78888888899999999998887788889999999999988888775322223488888887 44555554 6788888
Q ss_pred cEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCC
Q 042869 462 EELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK 508 (707)
Q Consensus 462 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 508 (707)
+.|+++.|-+. ....+..+..+..|+.|++.||+.-
T Consensus 257 ~~LDlsyNll~-----------~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLS-----------EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhh-----------cchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888887653 2334455666777888888887653
No 53
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.11 E-value=6.8e-06 Score=82.38 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=56.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc--CHHHHHHHHHHHhchhhhhcchhh-----HHHHHHHHHH-hcCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP--QIKNIQGEIAEKIGLELAEQSHET-----VRAGRLLERL-KKEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~l-~~~k 73 (707)
+|+||||||++||++.... +|+..+||.+++++ .+.++++++...+-.......... .......+++ ..|+
T Consensus 178 pGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~ 256 (416)
T PRK09376 178 PKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGK 256 (416)
T ss_pred CCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7999999999999998876 89999999998887 788888888633222211111111 1111222232 3578
Q ss_pred cEEEEEeCCCC
Q 042869 74 KILIILDDIWG 84 (707)
Q Consensus 74 r~LlVlDdv~~ 84 (707)
+++|++|++..
T Consensus 257 dVlL~iDsItR 267 (416)
T PRK09376 257 DVVILLDSITR 267 (416)
T ss_pred CEEEEEEChHH
Confidence 99999999963
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=4.4e-07 Score=96.05 Aligned_cols=171 Identities=23% Similarity=0.258 Sum_probs=87.9
Q ss_pred CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEE
Q 042869 338 GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILT 417 (707)
Q Consensus 338 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~ 417 (707)
...+.+|..|++..|.+..+... +..+++|++|++++|.|.++. .+..+..|+.|++.+|.+.....+..+..|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhccc
Confidence 34555666666666655554432 345666666666666665542 2445555666666666666655555566666666
Q ss_pred cCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCC-
Q 042869 418 LRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLS- 495 (707)
Q Consensus 418 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~- 495 (707)
+++|.+..+... ...+.+|+.+.+.++.... +.. +..+..+..+++..+.+.. ...+..+.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i~~--~~~~~~l~~~~l~~n~i~~--------------~~~l~~~~~ 231 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIRE-IEG--LDLLKKLVLLSLLDNKISK--------------LEGLNELVM 231 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhc-ccc--hHHHHHHHHhhccccccee--------------ccCcccchh
Confidence 666655554442 3555666666665533221 111 1222222233333333321 11111122
Q ss_pred -CCcEEEEeeccCCCCCCChhhcccceEEEEEe
Q 042869 496 -KLTSLEILIQDEKALPRDLSFFKMLQRYRILI 527 (707)
Q Consensus 496 -~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~ 527 (707)
.|+.+.+.++.....+..+..+.++..+.+..
T Consensus 232 ~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 232 LHLRELYLSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHHHhcccCccccccccccccccccccchhh
Confidence 26777777777666655555556666665543
No 55
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.06 E-value=1.7e-05 Score=77.24 Aligned_cols=167 Identities=20% Similarity=0.251 Sum_probs=82.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHH----------HHHhchhhh----------hcchhhHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEI----------AEKIGLELA----------EQSHETVR 61 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i----------~~~l~~~~~----------~~~~~~~~ 61 (707)
.|+|||+|++++.+...... + .++|+...+.... .....+ .+.+..... ........
T Consensus 29 rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (234)
T PF01637_consen 29 RGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNE-SSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSA 105 (234)
T ss_dssp TTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--
T ss_pred CcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhh-hHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHH
Confidence 69999999999998764321 2 3344433333222 112221 122221111 01112334
Q ss_pred HHHHHHHHhc-CCcEEEEEeCCCCcc-cc---cc----cccccC--CCCCCeEEEEeeCCcccccc-------ccCCcce
Q 042869 62 AGRLLERLKK-EPKILIILDDIWGSL-DL---EA----IGIPFA--DNNSGCKVLLTARSQDVLSC-------KMDCQQN 123 (707)
Q Consensus 62 ~~~~~~~l~~-~kr~LlVlDdv~~~~-~~---~~----l~~~l~--~~~~gs~iivTtr~~~v~~~-------~~~~~~~ 123 (707)
...+.+.+.+ +++++||+||+.... .. .. +...+. .....-.+|+++....+... ..+....
T Consensus 106 l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~ 185 (234)
T PF01637_consen 106 LERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH 185 (234)
T ss_dssp HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce
Confidence 5556666654 346999999997655 11 11 111111 12334455555555433211 1233345
Q ss_pred EEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHH
Q 042869 124 FFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 124 ~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
+.+++|+.+++++++...+.....-+...+..++|...+||+|..|..
T Consensus 186 ~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 186 IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 999999999999999987644311112345579999999999987764
No 56
>PRK06893 DNA replication initiation factor; Validated
Probab=98.04 E-value=1.4e-05 Score=76.92 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=81.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||+||+++++....+ ...+.++++.... .. ...+.+.+. +.-+||+||
T Consensus 48 ~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~---------------------~~~~~~~~~--~~dlLilDD 99 (229)
T PRK06893 48 KSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YF---------------------SPAVLENLE--QQDLVCLDD 99 (229)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hh---------------------hHHHHhhcc--cCCEEEEeC
Confidence 6999999999999986554 3345666653100 00 011222222 245999999
Q ss_pred CCCc---ccccc-cccccCCC-CCCeEEEEeeCCcccc---------ccccCCcceEEeecCChHHHHHHHHhhhcCCCC
Q 042869 82 IWGS---LDLEA-IGIPFADN-NSGCKVLLTARSQDVL---------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRE 147 (707)
Q Consensus 82 v~~~---~~~~~-l~~~l~~~-~~gs~iivTtr~~~v~---------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 147 (707)
++.. .+|+. +...+... ..|+.+||+|.+.... .........+++++++.++.++++.+.+....
T Consensus 100 i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~- 178 (229)
T PRK06893 100 LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG- 178 (229)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 9864 34542 22222111 2356666555543211 11223345889999999999999998886322
Q ss_pred CchhHHHHHHHHHHcCCcchHHHH
Q 042869 148 NGELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 148 ~~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
-.-.++...-|++++.|..-++..
T Consensus 179 l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 179 IELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred CCCCHHHHHHHHHhccCCHHHHHH
Confidence 122245667777877776654443
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=1.1e-05 Score=70.34 Aligned_cols=107 Identities=25% Similarity=0.353 Sum_probs=75.2
Q ss_pred CCCcHHHHHHHHHHHhhhcc---CCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENN---LFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILII 78 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlV 78 (707)
+|+|||++++.+..+..... .-..++|+.+....+...+.+.|+++++...............+.+.+.+.+..+||
T Consensus 13 ~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lv 92 (131)
T PF13401_consen 13 PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLV 92 (131)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEE
T ss_pred CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 69999999999998764321 123467999888889999999999999988766333555667777888776667999
Q ss_pred EeCCCCc-c--cccccccccCCCCCCeEEEEeeCC
Q 042869 79 LDDIWGS-L--DLEAIGIPFADNNSGCKVLLTARS 110 (707)
Q Consensus 79 lDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtr~ 110 (707)
+|+++.. . .++.+.. +.. ..+-++|+..+.
T Consensus 93 iDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 93 IDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp EETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred EeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 9999765 2 2233322 222 556777777765
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.02 E-value=7.7e-05 Score=73.93 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=80.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.+....... | ..+|-..+-.+-++++++ .-.+....|+|.+|++|.
T Consensus 57 PG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~e-----------------~a~~~~~~gr~tiLflDE 112 (436)
T COG2256 57 PGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREIIE-----------------EARKNRLLGRRTILFLDE 112 (436)
T ss_pred CCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHHH-----------------HHHHHHhcCCceEEEEeh
Confidence 7999999999999865543 3 222322221122222221 122223336899999999
Q ss_pred CCC--cccccccccccCCCCCCeEEEE--eeCCcccc--ccccCCcceEEeecCChHHHHHHHHhhhc------CCCCCc
Q 042869 82 IWG--SLDLEAIGIPFADNNSGCKVLL--TARSQDVL--SCKMDCQQNFFVDVLNEKEAWSLFKKMTG------DCRENG 149 (707)
Q Consensus 82 v~~--~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~--~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~------~~~~~~ 149 (707)
|.. ..|-+.+ +|...+|.-|+| ||.++.-. .....-..++++++|+.++-.+++.+.+- +.....
T Consensus 113 IHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~ 189 (436)
T COG2256 113 IHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIV 189 (436)
T ss_pred hhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCccccc
Confidence 963 3444433 334466888887 44444321 11123346899999999999999988442 111111
Q ss_pred hhHHHHHHHHHHcCCcc
Q 042869 150 ELKSVAAEIVKECAGLP 166 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~P 166 (707)
-.++...-+++.++|--
T Consensus 190 i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 190 LDEEALDYLVRLSNGDA 206 (436)
T ss_pred CCHHHHHHHHHhcCchH
Confidence 22456777888888854
No 59
>PF13173 AAA_14: AAA domain
Probab=98.02 E-value=9.4e-06 Score=70.18 Aligned_cols=112 Identities=24% Similarity=0.226 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+||||++++++.+.. ....+++++..+......... +....+.+.... ++.+|+||+
T Consensus 11 R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~i~iDE 69 (128)
T PF13173_consen 11 RGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP-----------------DLLEYFLELIKP-GKKYIFIDE 69 (128)
T ss_pred CCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh-----------------hhHHHHHHhhcc-CCcEEEEeh
Confidence 58999999999998765 235566776554432110000 011222222222 468999999
Q ss_pred CCCcccccccccccCCCCCCeEEEEeeCCccccc-----cccCCcceEEeecCChHHH
Q 042869 82 IWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLS-----CKMDCQQNFFVDVLNEKEA 134 (707)
Q Consensus 82 v~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~~~~~~~~~~l~~L~~~~a 134 (707)
|....+|......+.+.....+|++|+....... ...+....++|.+|+..|-
T Consensus 70 iq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 70 IQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999899888777766666789999999866542 1122335788999987763
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=7e-06 Score=55.00 Aligned_cols=37 Identities=38% Similarity=0.554 Sum_probs=22.6
Q ss_pred CccEEEecCCCcccCCccccccCCCCEEEecCCCCCC
Q 042869 367 ELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD 403 (707)
Q Consensus 367 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 403 (707)
+|++|++++|.++.+|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666666666666666666666666554
No 61
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.97 E-value=0.00021 Score=74.62 Aligned_cols=168 Identities=14% Similarity=0.151 Sum_probs=97.0
Q ss_pred CCCCcHHHHHHHHHHHhhhcc-CC---CcEEEEEecCCcCHHHHHHHHHHHhc---hhhhhcc-hhhHHHHHHHHHHh-c
Q 042869 1 MGGIGKTTLVKEVGRQVKENN-LF---EKVISSRVSQTPQIKNIQGEIAEKIG---LELAEQS-HETVRAGRLLERLK-K 71 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~~s~~~~~~~~~~~i~~~l~---~~~~~~~-~~~~~~~~~~~~l~-~ 71 (707)
.+|+|||+++++++++..... .. -..+|+++....+...++..|++++. ...+... ...+....+.+.+. .
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 127 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER 127 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 379999999999998754321 11 13567787777778889999999883 3222111 12233445555554 3
Q ss_pred CCcEEEEEeCCCCcc-ccc----cccccc-CCCC--CCeEEEEeeCCccccc---cc---cCCcceEEeecCChHHHHHH
Q 042869 72 EPKILIILDDIWGSL-DLE----AIGIPF-ADNN--SGCKVLLTARSQDVLS---CK---MDCQQNFFVDVLNEKEAWSL 137 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~-~~~----~l~~~l-~~~~--~gs~iivTtr~~~v~~---~~---~~~~~~~~l~~L~~~~a~~L 137 (707)
+++++||||+++... ..+ .+.... .... ..-.+|.+|....... .. .-....+.+++++.++..++
T Consensus 128 ~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~i 207 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDI 207 (365)
T ss_pred CCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHH
Confidence 467899999998662 111 221110 1111 2334555555443210 00 01124688999999999999
Q ss_pred HHhhhc---C-CCCCchhHHHHHHHHHHcCCcchH
Q 042869 138 FKKMTG---D-CRENGELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 138 f~~~~~---~-~~~~~~~~~~~~~i~~~c~g~Pla 168 (707)
+..++. . ....++..+...+++....|.|-.
T Consensus 208 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 208 LENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 988763 1 112233334455667777788743
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=3.1e-06 Score=93.47 Aligned_cols=148 Identities=25% Similarity=0.269 Sum_probs=101.9
Q ss_pred ccccceEEeccCCCCC--CCC-C-CCCCCccceeeecccccc-ccCchhhcCCCCccEEEecCCCcccCCccccccCCCC
Q 042869 318 TLKVCTAISLNNSNIS--EPP-Q-GFECPQLRFLCIGYHASL-RIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQ 392 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~--~~~-~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 392 (707)
...++++|++.+...- .++ . ...+|+|++|.+.+-... +-......++++|+.||+++++++.+ ..++.|+||+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 4567888888775432 121 1 226899999999864332 11224467899999999999999988 7899999999
Q ss_pred EEEecCCCCCC---cccccCCCCCcEEEcCCCchhhch-------HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCc
Q 042869 393 TLSLENCKLGD---MAIIGDLKKLEILTLRGSNMQKLV-------EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLE 462 (707)
Q Consensus 393 ~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp-------~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~ 462 (707)
.|.+.+-.+.. ...+.+|++|++||+|......-+ +.-..|++|+.||.++......+-...+..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99999887765 467889999999999987433222 22245899999999875444444343344445555
Q ss_pred EEEc
Q 042869 463 ELYI 466 (707)
Q Consensus 463 ~L~l 466 (707)
.+.+
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 5443
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=3.2e-06 Score=79.49 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=44.5
Q ss_pred HhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccc--
Q 042869 562 QLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFP-- 639 (707)
Q Consensus 562 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~-- 639 (707)
.+|++..+.+..|+ ++....+- ....||.+-.|.+.. .++.+|.+ ......||.|..|.+.+.|-...+-.
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek----~se~~p~~~~LnL~~-~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEK----GSEPFPSLSCLNLGA-NNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred hcccchheeeecCc-ccchhhcc----cCCCCCcchhhhhcc-cccccHHH-HHHHcCCchhheeeccCCcccccccCCc
Confidence 46677777776665 22222221 233466666666654 34444421 12344577777777777655544411
Q ss_pred --hhhhccCCCCcEEEEc
Q 042869 640 --LVIGRGLQQLQSVKVS 655 (707)
Q Consensus 640 --~~~~~~l~~L~~L~i~ 655 (707)
.-.+..|++++.|+=+
T Consensus 270 rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 270 RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ceEEEEeeccceEEecCc
Confidence 1123456666666543
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.90 E-value=0.00021 Score=73.07 Aligned_cols=95 Identities=12% Similarity=-0.026 Sum_probs=56.6
Q ss_pred CcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccc-cCCcceEEeecCChHHHHHHHHhhhcCCCCCchh
Q 042869 73 PKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCK-MDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGEL 151 (707)
Q Consensus 73 kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~ 151 (707)
.+..+|+|+..+...+.. .++ +.+-|..||+...+.... ......+++++++.++..+++.+.+..... .-.
T Consensus 129 ~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~ 201 (328)
T PRK00080 129 FRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EID 201 (328)
T ss_pred cceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcC
Confidence 355666666554433221 111 134455566654443210 011346899999999999999988763222 223
Q ss_pred HHHHHHHHHHcCCcchHHHHHHH
Q 042869 152 KSVAAEIVKECAGLPIAIVPIAK 174 (707)
Q Consensus 152 ~~~~~~i~~~c~g~Plai~~~~~ 174 (707)
.+....|++.|+|.|-.+..+..
T Consensus 202 ~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 202 EEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHHHHHcCCCchHHHHHHH
Confidence 45688999999999965555444
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.78 E-value=0.00028 Score=74.46 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=81.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.+++..... |+.++....-.+-.+++++ ........+++.+|++|+
T Consensus 45 pGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~ii~-----------------~~~~~~~~g~~~vL~IDE 100 (413)
T PRK13342 45 PGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLREVIE-----------------EARQRRSAGRRTILFIDE 100 (413)
T ss_pred CCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHHHHH-----------------HHHHhhhcCCceEEEEec
Confidence 7999999999998865432 2222221111111111211 111112234689999999
Q ss_pred CCCc--ccccccccccCCCCCCeEEEEe--eCCcc--ccccccCCcceEEeecCChHHHHHHHHhhhcCC-CCC-chhHH
Q 042869 82 IWGS--LDLEAIGIPFADNNSGCKVLLT--ARSQD--VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDC-REN-GELKS 153 (707)
Q Consensus 82 v~~~--~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~-~~~-~~~~~ 153 (707)
++.. .+.+.+...+ ..|..++|. |.+.. +..........+.+.+++.++...++.+.+... ... .-..+
T Consensus 101 i~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~ 177 (413)
T PRK13342 101 IHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDE 177 (413)
T ss_pred hhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH
Confidence 9855 3344443332 235555553 33322 111111223578999999999999998865421 111 22356
Q ss_pred HHHHHHHHcCCcchHHHHHHHH
Q 042869 154 VAAEIVKECAGLPIAIVPIAKA 175 (707)
Q Consensus 154 ~~~~i~~~c~g~Plai~~~~~~ 175 (707)
....+++.|+|.+..+..+...
T Consensus 178 al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 178 ALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 6788999999998766544433
No 66
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.77 E-value=0.00021 Score=72.50 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=84.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhh-------hhcchhhHHHHHHHHHHhcCC
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLEL-------AEQSHETVRAGRLLERLKKEP 73 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~~~~~~l~~~k 73 (707)
.+|+|||+||+.+++..... + ..+.........++. ..+..++... ... .......+...+.. .
T Consensus 38 p~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l~~~~~~~vl~iDEi~~l--~~~~~e~l~~~~~~-~ 108 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AILTNLEEGDVLFIDEIHRL--SPAVEELLYPAMED-F 108 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHHHhcccCCEEEEehHhhh--CHHHHHHhhHHHhh-h
Confidence 47999999999999876432 2 112111111222222 2222222111 000 01112223333333 4
Q ss_pred cEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccc-cCCcceEEeecCChHHHHHHHHhhhcCCCCCchhH
Q 042869 74 KILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCK-MDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELK 152 (707)
Q Consensus 74 r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~ 152 (707)
+..+|+|+..+..++.. .++ +..-|..||+...+.... ......+.+++++.++..+++.+.+..... .-..
T Consensus 109 ~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~ 181 (305)
T TIGR00635 109 RLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEP 181 (305)
T ss_pred heeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCH
Confidence 56677777666555442 111 245555666665443210 012346789999999999999988753222 2224
Q ss_pred HHHHHHHHHcCCcchHHHHHHH
Q 042869 153 SVAAEIVKECAGLPIAIVPIAK 174 (707)
Q Consensus 153 ~~~~~i~~~c~g~Plai~~~~~ 174 (707)
+....|++.|+|.|-.+..++.
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHH
Confidence 5678899999999976655544
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=1.7e-05 Score=87.69 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=92.2
Q ss_pred Cccceeeecccccc--ccCchhhcCCCCccEEEecCCCccc--CCccccccCCCCEEEecCCCCCCcccccCCCCCcEEE
Q 042869 342 PQLRFLCIGYHASL--RIPSNFFTGMTELRVLDFTQMYLLA--LPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILT 417 (707)
Q Consensus 342 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~ 417 (707)
.+|+.|+++|.... ..+..+-.-+|.|+.|.+++-.+.. +-.-...++||+.||+++++++....+++|++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 57888998875432 3444555569999999999865533 2333457889999999999999999999999999999
Q ss_pred cCCCchhhc--hHHhhcCcCCCEEcCCCCCCCcccchh------hhhCCCCCcEEEccCCCc
Q 042869 418 LRGSNMQKL--VEEIGRLTQLRLLDLSNCSKLKVIPAY------VISSLSRLEELYIGESPI 471 (707)
Q Consensus 418 l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~------~~~~l~~L~~L~l~~~~~ 471 (707)
+++=.+..- -..+-+|++|+.||++.-..... +.. .-..|++|+.|+.++..+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcch
Confidence 887655532 24577899999999987443322 211 123478888888887654
No 68
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.75 E-value=2.6e-05 Score=77.71 Aligned_cols=226 Identities=21% Similarity=0.221 Sum_probs=143.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCc-EEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEK-VISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
|||||||++-++.. .+.. |.. ++++....-.+...+--.+...++....... .....+...... +|.++|+|
T Consensus 23 ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~~~~~-rr~llvld 95 (414)
T COG3903 23 GGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVRRIGD-RRALLVLD 95 (414)
T ss_pred CccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHHHHhh-hhHHHHhc
Confidence 89999999998887 4443 754 6666665555666666666666666554322 122233444443 79999999
Q ss_pred CCCCcc-cccccccccCCCCCCeEEEEeeCCccccccccCCcceEEeecCChH-HHHHHHHhhhcCC----CCCchhHHH
Q 042869 81 DIWGSL-DLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEK-EAWSLFKKMTGDC----RENGELKSV 154 (707)
Q Consensus 81 dv~~~~-~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~----~~~~~~~~~ 154 (707)
|..+.. +-..+...+..+...-.|+.|+|..-. +.....+.+..|+.- ++.++|.-.+... .-...-...
T Consensus 96 ncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~ 171 (414)
T COG3903 96 NCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAA 171 (414)
T ss_pred CcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHH
Confidence 987652 222222233344445678888887543 244556677777755 7899988766311 112233556
Q ss_pred HHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHH-HHHhhc-cCCCccccccceeeeeeecccCChHHHHHHHHHhcc
Q 042869 155 AAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQ-LERTFL-RSFSGTQAVAAYSTIELSYYQLEGEELRQTFLLIGY 232 (707)
Q Consensus 155 ~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~-l~~~~~-~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~~~ 232 (707)
..+|.+...|.|++|...++..+..........++. +..... ..............+.+||.=|...+ +--|-.++.
T Consensus 172 v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe-~~~~~rLa~ 250 (414)
T COG3903 172 VAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE-RALFGRLAV 250 (414)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH-HHHhcchhh
Confidence 899999999999999999999987766555444432 111000 11111234567889999999998885 888888888
Q ss_pred cc-ccchh
Q 042869 233 TF-ISCVK 239 (707)
Q Consensus 233 fp-~~~~~ 239 (707)
|. .|+.+
T Consensus 251 ~~g~f~~~ 258 (414)
T COG3903 251 FVGGFDLG 258 (414)
T ss_pred hhhhhccc
Confidence 87 55544
No 69
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=8.4e-05 Score=75.15 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=55.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC--cCHHHHHHHHHHHhchhhhhcch-----hhHHH-HHHHHHHhcCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT--PQIKNIQGEIAEKIGLELAEQSH-----ETVRA-GRLLERLKKEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~-----~~~~~-~~~~~~l~~~k 73 (707)
+|+|||||++.+++..... +|+..+|+.+.++ ..+.++++.+...+-......+. ....+ .........|+
T Consensus 177 ~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gk 255 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 255 (415)
T ss_pred CCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999988765 8999999998866 78999999995443222111111 11111 22222223578
Q ss_pred cEEEEEeCCCC
Q 042869 74 KILIILDDIWG 84 (707)
Q Consensus 74 r~LlVlDdv~~ 84 (707)
+++|++|++..
T Consensus 256 dVVLlIDEitR 266 (415)
T TIGR00767 256 DVVILLDSITR 266 (415)
T ss_pred CeEEEEEChhH
Confidence 99999999964
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00023 Score=72.24 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCCcHHHHHHHHHHHh----hhccCCCcEEEEEe-cCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQV----KENNLFEKVISSRV-SQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~L 76 (707)
.|+||||+|+.++... ....|+|...|... +....+.+ .+++.+.+.... .. +++=+
T Consensus 35 ~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p----------------~~-~~~kv 96 (313)
T PRK05564 35 DGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKP----------------YE-GDKKV 96 (313)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCc----------------cc-CCceE
Confidence 6999999999999854 22345666556442 22223333 222333222110 11 23455
Q ss_pred EEEeCCC--CcccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHH
Q 042869 77 IILDDIW--GSLDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKS 153 (707)
Q Consensus 77 lVlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~ 153 (707)
+|+|+++ +.+.++.+...+.....++.+|++|.+.+.. ..-......+.+.++++++....+.+...+ . ..+
T Consensus 97 ~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-~----~~~ 171 (313)
T PRK05564 97 IIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND-I----KEE 171 (313)
T ss_pred EEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-C----CHH
Confidence 6666654 5566777877776656788999988775533 111122358889999999998888765421 1 123
Q ss_pred HHHHHHHHcCCcchHHHH
Q 042869 154 VAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 154 ~~~~i~~~c~g~Plai~~ 171 (707)
.+..++..++|.|..+..
T Consensus 172 ~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 172 EKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 367889999999875543
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=1e-05 Score=76.28 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=16.6
Q ss_pred ccccccccceeeccCccccccc
Q 042869 589 RTTAFSLLESLFLRDLRNLEEI 610 (707)
Q Consensus 589 ~~~~~~~L~~L~l~~~~~l~~~ 610 (707)
.+..||+|..|.+.+.|-+..+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHcCCchhheeeccCCcccccc
Confidence 3456999999999887766655
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=6.5e-06 Score=87.17 Aligned_cols=129 Identities=27% Similarity=0.327 Sum_probs=100.1
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcC
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLR 419 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 419 (707)
.+..+..+.+..|.+..+.. .+..+++|..|++.+|.+.++...+..+++|++|++++|.|+....+..+..|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 44556666666666665322 25778999999999999999877688899999999999999998889999999999999
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCCCcccch-hhhhCCCCCcEEEccCCCcc
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPA-YVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~ 472 (707)
+|.+..+.. +..+++|+.+++++|.. ..+.. . ...+.+|+.+.+.+|.+.
T Consensus 149 ~N~i~~~~~-~~~l~~L~~l~l~~n~i-~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 149 GNLISDISG-LESLKSLKLLDLSYNRI-VDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cCcchhccC-CccchhhhcccCCcchh-hhhhhhh-hhhccchHHHhccCCchh
Confidence 998887653 55689999999998544 33333 2 367888888888888754
No 73
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.67 E-value=0.00015 Score=70.11 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=81.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+.+++..... ....++++++.-.+ .. ..+.+.+. +.-+||+||
T Consensus 47 ~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------------~~~~~~~~--~~~lLvIDd 98 (226)
T TIGR03420 47 SGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------------PEVLEGLE--QADLVCLDD 98 (226)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------------HHHHhhcc--cCCEEEEeC
Confidence 7999999999999875432 33455665432211 00 01111222 234899999
Q ss_pred CCCcc---ccc-ccccccCC-CCCCeEEEEeeCCcccc--------ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGSL---DLE-AIGIPFAD-NNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~~---~~~-~l~~~l~~-~~~gs~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
++... .|. .+...+.. ...+.++|+||+..... .........+++.+++.++-..++.+.+.... .
T Consensus 99 i~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~ 177 (226)
T TIGR03420 99 VEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-L 177 (226)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-C
Confidence 98553 222 23222211 12345788888853211 10111235789999999998888877553211 1
Q ss_pred chhHHHHHHHHHHcCCcchHHHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPIAK 174 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~~~ 174 (707)
.-..+....+++.+.|.|..+..+..
T Consensus 178 ~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 178 QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 12245567777788888876665543
No 74
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=7.1e-05 Score=50.16 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=17.4
Q ss_pred CCCEEEecCCCCCCcc-cccCCCCCcEEEcCCCchhhc
Q 042869 390 NLQTLSLENCKLGDMA-IIGDLKKLEILTLRGSNMQKL 426 (707)
Q Consensus 390 ~L~~L~l~~~~~~~~~-~i~~l~~L~~L~l~~~~l~~l 426 (707)
+|++|++++|++++.+ .+++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4555555555555522 255555555555555544433
No 75
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.0021 Score=68.12 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=94.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||+|++++.+.......-..+++++ ..++...+...++... .......+... +.-+||+||
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~--~~dvLiIDD 214 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC--QNDVLIIDD 214 (450)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc--cCCEEEEec
Confidence 59999999999998654431122344443 4567777766654311 12233444443 345899999
Q ss_pred CCCcc---ccc-ccccccCC-CCCCeEEEEeeCCcccc--------ccccCCcceEEeecCChHHHHHHHHhhhcCCCC-
Q 042869 82 IWGSL---DLE-AIGIPFAD-NNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRE- 147 (707)
Q Consensus 82 v~~~~---~~~-~l~~~l~~-~~~gs~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~- 147 (707)
+.... .+. .+...+.. ...|..||+|+....-. ..+....-.+++++++.++-.+++.+.+.....
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~ 294 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK 294 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC
Confidence 97542 222 22222111 12355788887653211 112222347789999999999999988853211
Q ss_pred CchhHHHHHHHHHHcCCcchHHHHHHHHh
Q 042869 148 NGELKSVAAEIVKECAGLPIAIVPIAKAL 176 (707)
Q Consensus 148 ~~~~~~~~~~i~~~c~g~Plai~~~~~~l 176 (707)
..-.++...-|++.++|.|-.+..+...+
T Consensus 295 ~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 295 QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 12336778899999999997766555433
No 76
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=2.9e-06 Score=89.26 Aligned_cols=126 Identities=21% Similarity=0.185 Sum_probs=94.1
Q ss_pred ccccceEEeccCCCCCCCCCCC-CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEE
Q 042869 318 TLKVCTAISLNNSNISEPPQGF-ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLS 395 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 395 (707)
.|-.+...++..|.+..+.... -++.|++|+++.|...+.. .+..+++|+.|||++|.+..+|.- ...+ +|..|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 4455666677777665554433 5688999999988877754 477899999999999988887753 2233 389999
Q ss_pred ecCCCCCCcccccCCCCCcEEEcCCCchhhch--HHhhcCcCCCEEcCCCCCC
Q 042869 396 LENCKLGDMAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLSNCSK 446 (707)
Q Consensus 396 l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~ 446 (707)
+++|.++..-.|.+|.+|+.||++.|-+.... .-++.|..|+.|++.||+.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99999888888889999999999988554221 2367788899999998653
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0017 Score=67.14 Aligned_cols=97 Identities=9% Similarity=0.093 Sum_probs=61.5
Q ss_pred CcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++.... .++.+...+.......++|++|.+.. +...-..-...+++.+++.++..+.+.+.+..... .
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~ 197 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-D 197 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-C
Confidence 45699999998654 45555555544445667777776533 22111122357899999999999888876642211 1
Q ss_pred hhHHHHHHHHHHcCCcchHHH
Q 042869 150 ELKSVAAEIVKECAGLPIAIV 170 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai~ 170 (707)
-..+.+..|++.++|.|-.+.
T Consensus 198 i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 198 TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 123457788999999885433
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.50 E-value=0.00091 Score=62.32 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=59.1
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+.+-++|+||+... +.++.+...+......+.+|++|++.. +..........+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 35678999999754 335555555544344666777776542 22211122358999999999998888876 1 1
Q ss_pred chhHHHHHHHHHHcCCcchH
Q 042869 149 GELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pla 168 (707)
..+.+..|++.++|.|..
T Consensus 170 --~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 --SEEAAELLLALAGGSPGA 187 (188)
T ss_pred --CHHHHHHHHHHcCCCccc
Confidence 135688999999998853
No 79
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.45 E-value=0.0025 Score=70.29 Aligned_cols=176 Identities=15% Similarity=0.185 Sum_probs=97.6
Q ss_pred CCCCcHHHHHHHHHHHhhh---ccCCC--cEEEEEecCCcCHHHHHHHHHHHhchhhhhcc-hhhHHHHHHHHHHhc--C
Q 042869 1 MGGIGKTTLVKEVGRQVKE---NNLFE--KVISSRVSQTPQIKNIQGEIAEKIGLELAEQS-HETVRAGRLLERLKK--E 72 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~--~ 72 (707)
.+|+|||+.++.|...... +.... .+++|++..-.+...+...|.+++....+..+ ........++..+.. +
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r 868 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNR 868 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccc
Confidence 4799999999999886542 11222 25677777777888888999888844333222 123344555555532 2
Q ss_pred CcEEEEEeCCCCccc--ccccccccC-CCCCCeEEEE--eeCCcccc-------ccccCCcceEEeecCChHHHHHHHHh
Q 042869 73 PKILIILDDIWGSLD--LEAIGIPFA-DNNSGCKVLL--TARSQDVL-------SCKMDCQQNFFVDVLNEKEAWSLFKK 140 (707)
Q Consensus 73 kr~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iiv--Ttr~~~v~-------~~~~~~~~~~~l~~L~~~~a~~Lf~~ 140 (707)
...+||||+|+.... -+.+...+. ....+++|+| +|.+.... ..... ...+..++++.++-.+++..
T Consensus 869 ~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred cceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHH
Confidence 246999999985421 111111111 1223555555 33221111 00111 22356799999999999998
Q ss_pred hhcCC---CCCchhHHHHHHHHHHcCCcchHHHHHHHHhc
Q 042869 141 MTGDC---RENGELKSVAAEIVKECAGLPIAIVPIAKALK 177 (707)
Q Consensus 141 ~~~~~---~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~ 177 (707)
++... .....++-+|+.++..-|-.=.|+.++-.+..
T Consensus 948 RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 87531 22233344444444444445566666555543
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0021 Score=68.65 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|+++.. ..++.+...+........+|++|.. ..+..........+++.+++.++....+.+.+......
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999865 4566666555444456666655544 33332112223578999999999999998887532221
Q ss_pred chhHHHHHHHHHHcCCcchH
Q 042869 149 GELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pla 168 (707)
. ..+....|++.++|.+-.
T Consensus 207 i-e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 207 T-DIEALRIIAYKSEGSARD 225 (507)
T ss_pred C-CHHHHHHHHHHcCCCHHH
Confidence 1 234567788899987743
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00031 Score=71.52 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCccceeeeccccccccCchhhcCCCCccEEEecCC-CcccCCccccccCCCCEEEecCC
Q 042869 341 CPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQM-YLLALPSSLGLLQNLQTLSLENC 399 (707)
Q Consensus 341 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~ 399 (707)
+.+++.|+++++.+..+|. --.+|+.|.++++ .+..+|..+ ..+|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3555566666555555541 1224556665553 233344433 235556666555
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.40 E-value=0.0015 Score=67.44 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCch
Q 042869 74 KILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGE 150 (707)
Q Consensus 74 r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 150 (707)
+-+||+||+.... ....+...+.......++|+||....-. .........+++.+++.++....+.+.+...... -
T Consensus 126 ~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~ 204 (337)
T PRK12402 126 YKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-Y 204 (337)
T ss_pred CcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-C
Confidence 4589999997552 2333333332333456788887653321 1111223578889999999988888766422211 2
Q ss_pred hHHHHHHHHHHcCCcchHHH
Q 042869 151 LKSVAAEIVKECAGLPIAIV 170 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Plai~ 170 (707)
..+....+++.++|.+-.+.
T Consensus 205 ~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 205 DDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 24567888888888765443
No 83
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.0003 Score=62.97 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=69.4
Q ss_pred cceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC--ccccccCCCCEEEecC
Q 042869 321 VCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP--SSLGLLQNLQTLSLEN 398 (707)
Q Consensus 321 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~ 398 (707)
....+++.+|++..++.+..++.|.+|.+..|.+..+.+.+-.-+++|..|.+.+|.+..+. ..+..|+.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34456777777777777777778888888877777777766556777777777777776642 2345666777777777
Q ss_pred CCCCCc-----ccccCCCCCcEEEcCCC
Q 042869 399 CKLGDM-----AIIGDLKKLEILTLRGS 421 (707)
Q Consensus 399 ~~~~~~-----~~i~~l~~L~~L~l~~~ 421 (707)
|.++.- -.+..+++|++||+.+-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 776552 34666777777776653
No 84
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.37 E-value=0.0013 Score=62.56 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=82.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||.|.+++++.......=..+++++ ..++.+.+...+... ....+++.+.. -=+|++||
T Consensus 43 ~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~~--~DlL~iDD 105 (219)
T PF00308_consen 43 SGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLRS--ADLLIIDD 105 (219)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHCT--SSEEEEET
T ss_pred CCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhhc--CCEEEEec
Confidence 59999999999999876542222355654 455666665554331 12344455543 46899999
Q ss_pred CCCccc---ccc-cccccC-CCCCCeEEEEeeCCcccc-c-------cccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGSLD---LEA-IGIPFA-DNNSGCKVLLTARSQDVL-S-------CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~~~---~~~-l~~~l~-~~~~gs~iivTtr~~~v~-~-------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
++.... |.+ +...+. -...|-+||+|++...-. . .+....-.+++++++.++-.+++.+.+....-
T Consensus 106 i~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~- 184 (219)
T PF00308_consen 106 IQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI- 184 (219)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred chhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-
Confidence 976522 222 111111 113467899999664221 1 11222348999999999999999988852111
Q ss_pred chhHHHHHHHHHHcCCcchHH
Q 042869 149 GELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai 169 (707)
.-.+++..-+++.+.+..-.+
T Consensus 185 ~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 185 ELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp -S-HHHHHHHHHHTTSSHHHH
T ss_pred CCcHHHHHHHHHhhcCCHHHH
Confidence 122455556666655544433
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=97.36 E-value=0.0011 Score=67.57 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=80.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCC-cEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFE-KVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+||||+|+.+++..... .|. .++-++.+...+.. ..+++++.+..... ....++.-++|+|
T Consensus 43 ~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~--------------~~~~~~~kviiiD 106 (319)
T PLN03025 43 PGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIKMFAQKKV--------------TLPPGRHKIVILD 106 (319)
T ss_pred CCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHHHHHhccc--------------cCCCCCeEEEEEe
Confidence 6999999999999876332 232 22233333333322 22222221110000 0011346799999
Q ss_pred CCCCcc--cccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHH
Q 042869 81 DIWGSL--DLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAE 157 (707)
Q Consensus 81 dv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~ 157 (707)
+++... ..+.+...+-.....+++|+++....-. ..-......+++.+++.++....+.+.+......- ..+....
T Consensus 107 E~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~ 185 (319)
T PLN03025 107 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEA 185 (319)
T ss_pred chhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHH
Confidence 998652 2333333332233456777777653321 10011124788999999999888887764322111 1345778
Q ss_pred HHHHcCCcch
Q 042869 158 IVKECAGLPI 167 (707)
Q Consensus 158 i~~~c~g~Pl 167 (707)
|++.++|-.-
T Consensus 186 i~~~~~gDlR 195 (319)
T PLN03025 186 IIFTADGDMR 195 (319)
T ss_pred HHHHcCCCHH
Confidence 8888888653
No 86
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.33 E-value=0.00065 Score=69.24 Aligned_cols=134 Identities=24% Similarity=0.273 Sum_probs=81.6
Q ss_pred hcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCC-CCC-cccccCCCCCcEEEcCCC-chhhchHHhhcCcCCCE
Q 042869 362 FTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCK-LGD-MAIIGDLKKLEILTLRGS-NMQKLVEEIGRLTQLRL 438 (707)
Q Consensus 362 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~ 438 (707)
+..+++++.|++++|.+..+|. -..+|+.|.+++|. ++. |..+ ..+|++|++++| .+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 3447899999999999888882 23469999999876 444 3333 358999999998 67777753 555
Q ss_pred EcCCC--CCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhh
Q 042869 439 LDLSN--CSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSF 516 (707)
Q Consensus 439 L~l~~--~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~ 516 (707)
|++.+ +..+..+|.+ |+.|.+..+.... ....... -.++|+.|.+.++....+|..+.
T Consensus 117 L~L~~n~~~~L~~LPss-------Lk~L~I~~~n~~~----------~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP- 176 (426)
T PRK15386 117 LEIKGSATDSIKNVPNG-------LTSLSINSYNPEN----------QARIDNL--ISPSLKTLSLTGCSNIILPEKLP- 176 (426)
T ss_pred EEeCCCCCcccccCcch-------Hhheecccccccc----------ccccccc--cCCcccEEEecCCCcccCccccc-
Confidence 65554 2334555543 4555553322100 0000000 11578888888777655565442
Q ss_pred cccceEEEEEe
Q 042869 517 FKMLQRYRILI 527 (707)
Q Consensus 517 ~~~L~~L~l~~ 527 (707)
.+|+.|.+..
T Consensus 177 -~SLk~L~ls~ 186 (426)
T PRK15386 177 -ESLQSITLHI 186 (426)
T ss_pred -ccCcEEEecc
Confidence 5677777754
No 87
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.00044 Score=74.03 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=61.9
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|+++.. ..++.+...+........+|++|... .+..........+++.+++.++....+.+.+......
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 35679999999755 34666655554434455666666543 3322112234579999999999999998877432211
Q ss_pred chhHHHHHHHHHHcCCcchHH
Q 042869 149 GELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai 169 (707)
...+....|++.++|.+--+
T Consensus 195 -i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 -AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 12456788999999988544
No 88
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0019 Score=72.08 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=63.4
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|||++... +..+.+...+-......++|++|.+.. +......-...|.+.+++.++....+.+.+.... .
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I 196 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-L 196 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 56789999999754 455555544433334566666666543 3211111236799999999999988887664321 1
Q ss_pred chhHHHHHHHHHHcCCcchHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
....+....|++.++|.|-.+..+
T Consensus 197 ~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 197 PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122456788999999988644433
No 89
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0027 Score=69.44 Aligned_cols=99 Identities=10% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCccccc-cccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQDVLS-CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
++.-++|||++.... .++.+.+.+-......++|+||++..-.. ....-...+.++.++.++..+.+.+.+.....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI- 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI- 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 345688999998663 46766655544445778888888754331 11122357899999999999999887653221
Q ss_pred chhHHHHHHHHHHcCCcc-hHHHH
Q 042869 149 GELKSVAAEIVKECAGLP-IAIVP 171 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~P-lai~~ 171 (707)
.-..+....|++.++|.. -|+..
T Consensus 197 ~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 197 AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112456788999998865 34444
No 90
>PRK08727 hypothetical protein; Validated
Probab=97.29 E-value=0.0018 Score=62.38 Aligned_cols=138 Identities=15% Similarity=0.123 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||+||+++++....+ ...+.++++.+ ....+ ....+.+. +.-+||+||
T Consensus 50 ~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~------------------~~~~~~l~--~~dlLiIDD 101 (233)
T PRK08727 50 AGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL------------------RDALEALE--GRSLVALDG 101 (233)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH------------------HHHHHHHh--cCCEEEEeC
Confidence 6999999999999875543 23455665321 11111 11222332 346999999
Q ss_pred CCCcc---cccccccccCC--CCCCeEEEEeeCCcccc--------ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGSL---DLEAIGIPFAD--NNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~~---~~~~l~~~l~~--~~~gs~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+.... .|......+.. ..+|..||+|++...-. .........+++++++.++-.+++.+.+.... -
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l 180 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-L 180 (233)
T ss_pred cccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-C
Confidence 97542 23222111211 12366799999863211 01112234789999999999999998764211 1
Q ss_pred chhHHHHHHHHHHcCCcchH
Q 042869 149 GELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pla 168 (707)
.-..+...-|++.+.|-.-.
T Consensus 181 ~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 181 ALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred CCCHHHHHHHHHhCCCCHHH
Confidence 12245566777777765433
No 91
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.008 Score=61.65 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=100.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhc-CCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKK-EPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~kr~LlVlD 80 (707)
+|+|||+.++.+.........=...+.|++-...++.+++..|+++++..........+....+.+.+.. ++.++||||
T Consensus 51 ~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLD 130 (366)
T COG1474 51 TGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILD 130 (366)
T ss_pred CCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6999999999999987654222227889999999999999999999973332222234445555555553 578999999
Q ss_pred CCCCccccc-ccccc-cCCCC-CCeEEEEeeCCccc--c-------ccccCCcceEEeecCChHHHHHHHHhhhc----C
Q 042869 81 DIWGSLDLE-AIGIP-FADNN-SGCKVLLTARSQDV--L-------SCKMDCQQNFFVDVLNEKEAWSLFKKMTG----D 144 (707)
Q Consensus 81 dv~~~~~~~-~l~~~-l~~~~-~gs~iivTtr~~~v--~-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~----~ 144 (707)
+++....-. .+... +.... .+++|++..-.... . ....+. ..+..++.+.+|-...+..++. .
T Consensus 131 Eid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~ 209 (366)
T COG1474 131 EVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSA 209 (366)
T ss_pred chhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccC
Confidence 998653221 11111 11111 14554443333222 1 111222 2377899999999999988773 2
Q ss_pred CCCCchhHHHHHHHHHHcCC-cchHHHHH
Q 042869 145 CRENGELKSVAAEIVKECAG-LPIAIVPI 172 (707)
Q Consensus 145 ~~~~~~~~~~~~~i~~~c~g-~Plai~~~ 172 (707)
....++.-++...++..-+| .=.||..+
T Consensus 210 ~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 210 GVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred CCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 23333334444445555454 33444443
No 92
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.25 E-value=0.0062 Score=63.28 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... | +.+. ..++..... +. .......+.+........+|++|+
T Consensus 165 pGtGKT~lakaia~~l~~~--~-----~~v~----~~~l~~~~~---g~-------~~~~i~~~f~~a~~~~p~il~iDE 223 (364)
T TIGR01242 165 PGTGKTLLAKAVAHETNAT--F-----IRVV----GSELVRKYI---GE-------GARLVREIFELAKEKAPSIIFIDE 223 (364)
T ss_pred CCCCHHHHHHHHHHhCCCC--E-----Eecc----hHHHHHHhh---hH-------HHHHHHHHHHHHHhcCCcEEEhhh
Confidence 7999999999999876432 2 2221 111111110 10 111223333333334578999999
Q ss_pred CCCcc----------------cccccccccCC--CCCCeEEEEeeCCcccccc----ccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL----------------DLEAIGIPFAD--NNSGCKVLLTARSQDVLSC----KMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~----------------~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~----~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... .+..+...+.. ...+.+||.||........ .......+.+...+.++..++|.
T Consensus 224 iD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 224 IDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred hhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHH
Confidence 87431 01111111111 1236678888876443211 11224578999999999999999
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
.++......++. -...+++.+.|..
T Consensus 304 ~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 304 IHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred HHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 887543322211 1456777777654
No 93
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0016 Score=68.14 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=59.6
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
++.-++|+|++... +.++++...+-.......+|.+|.. ..+...-..-...|.+.+++.++..+.+.+.+.....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi- 198 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV- 198 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-
Confidence 45679999999855 4566665555332334555555554 3332211122346899999999988888877642211
Q ss_pred chhHHHHHHHHHHcCCcchH
Q 042869 149 GELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pla 168 (707)
.-..+....|++.++|.+--
T Consensus 199 ~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 199 QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CCCHHHHHHHHHHcCChHHH
Confidence 11245678899999998743
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.24 E-value=0.0046 Score=68.35 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEE--eeCCccccccc-cCCcceEEeecCChHHHH
Q 042869 61 RAGRLLERLKKEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLL--TARSQDVLSCK-MDCQQNFFVDVLNEKEAW 135 (707)
Q Consensus 61 ~~~~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~~~~-~~~~~~~~l~~L~~~~a~ 135 (707)
.+..+.+.+.. +++.++-|+.|.. ..|+.+...+....+...|++ ||++....... ......+.+.+++.++.+
T Consensus 281 ~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 281 LQNKLLKVLED-KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHhh-CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 44556666655 5788887766654 347777665555555555555 55654322111 112246788999999999
Q ss_pred HHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHH
Q 042869 136 SLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAK 174 (707)
Q Consensus 136 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 174 (707)
.++.+.+...... -..+....|.+....-+-|+..++.
T Consensus 360 ~Il~~~a~~~~v~-ls~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 360 LIVLNAAEKINVH-LAAGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHCCCcHHHHHHHHHH
Confidence 9999876532111 1134445555554444555554443
No 95
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0024 Score=68.74 Aligned_cols=100 Identities=9% Similarity=0.079 Sum_probs=62.3
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
++.-++|+|++... ..++.+.+.+-.-..+.++|++|.+ ..+...-..--..|.+..++.++..+.+.+.+......
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 45679999999855 4456665555333345566665555 43332111123578899999999999888776432111
Q ss_pred chhHHHHHHHHHHcCCcchHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
...+....|++.++|.|..+..+
T Consensus 203 -~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 203 -HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12345678999999998654443
No 96
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0037 Score=67.59 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|+|... ...+.+...+-....+.++|++|.+..-. .........+++.+++.++..+.+.+.+......
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999855 34555554443333466788777764322 1111223578999999999998888776432211
Q ss_pred chhHHHHHHHHHHcCCcchHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIV 170 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~ 170 (707)
-..+....|++.++|.+-.+.
T Consensus 197 -id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 197 -ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred -CCHHHHHHHHHHcCCCHHHHH
Confidence 223457788999999774443
No 97
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=4.9e-05 Score=63.28 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=58.2
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGS 421 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~ 421 (707)
.|...++++|...++|+.+-..++.+..|++++|.+..+|..+..++.||.|+++.|++.. |..+..|.+|-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 4455566666666666666566667777777777777777777777777777777777555 555556666666766666
Q ss_pred chhhchHH
Q 042869 422 NMQKLVEE 429 (707)
Q Consensus 422 ~l~~lp~~ 429 (707)
....+|..
T Consensus 134 a~~eid~d 141 (177)
T KOG4579|consen 134 ARAEIDVD 141 (177)
T ss_pred ccccCcHH
Confidence 66555543
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=97.13 E-value=0.0024 Score=61.57 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=77.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||.||+++++....+ -..+++++.. ++... ...+.+.+.+- =++|+||
T Consensus 54 ~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~------~~~~~------------------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 54 DGVGRSHLLQAACLRFEQR--GEPAVYLPLA------ELLDR------------------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEeeHH------HHHhh------------------hHHHHHhhhhC--CEEEEec
Confidence 6999999999998876433 2346666643 22111 01233333331 2688999
Q ss_pred CCCc---ccccc-cccccCC-CCCCeEEEEeeCCccccc--------cccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGS---LDLEA-IGIPFAD-NNSGCKVLLTARSQDVLS--------CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~---~~~~~-l~~~l~~-~~~gs~iivTtr~~~v~~--------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+... .+|++ +...+.. ...|.+||+|++...-.- .+......+++++++.++-.+++.+++.... -
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~ 184 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-L 184 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-C
Confidence 9743 34543 2222211 124667888888643211 0112235788999999999999886654221 1
Q ss_pred chhHHHHHHHHHHcCCcchH
Q 042869 149 GELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pla 168 (707)
.-.+++..-+++++.|-.-+
T Consensus 185 ~l~~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 185 HLTDEVGHFILTRGTRSMSA 204 (234)
T ss_pred CCCHHHHHHHHHhcCCCHHH
Confidence 11245566666666665443
No 99
>PF14516 AAA_35: AAA-like domain
Probab=97.12 E-value=0.012 Score=60.05 Aligned_cols=170 Identities=11% Similarity=0.168 Sum_probs=93.5
Q ss_pred CCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-----cCHHHHHHHHHH----Hhchhhhhcc-------hhhHHHHHHH
Q 042869 3 GIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-----PQIKNIQGEIAE----KIGLELAEQS-------HETVRAGRLL 66 (707)
Q Consensus 3 GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~~----~l~~~~~~~~-------~~~~~~~~~~ 66 (707)
.+|||+|...+.+..... .+. ++++++..- .+...+++.++. +++.+..-.. ........+.
T Consensus 41 q~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~ 118 (331)
T PF14516_consen 41 QMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFE 118 (331)
T ss_pred cCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHH
Confidence 589999999998877654 233 446665541 245555555544 4443221110 0111122233
Q ss_pred HHHhc--CCcEEEEEeCCCCccc--------ccccccccC-----CCCCCeEEEE-eeCCcccc----ccccCCcceEEe
Q 042869 67 ERLKK--EPKILIILDDIWGSLD--------LEAIGIPFA-----DNNSGCKVLL-TARSQDVL----SCKMDCQQNFFV 126 (707)
Q Consensus 67 ~~l~~--~kr~LlVlDdv~~~~~--------~~~l~~~l~-----~~~~gs~iiv-Ttr~~~v~----~~~~~~~~~~~l 126 (707)
+.+.. .++.+|+||+|+..-. +..++.... +....-+.++ .++..... .........+++
T Consensus 119 ~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L 198 (331)
T PF14516_consen 119 EYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIEL 198 (331)
T ss_pred HHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeC
Confidence 33321 4789999999975421 111111110 0011112222 22111111 112233457899
Q ss_pred ecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhccC
Q 042869 127 DVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKALKNK 179 (707)
Q Consensus 127 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~ 179 (707)
++++.+|...|..++-... . .....+|....+|+|.-+..++..+...
T Consensus 199 ~~Ft~~ev~~L~~~~~~~~-~----~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 199 PDFTPEEVQELAQRYGLEF-S----QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCHHHHHHHHHhhhccC-C----HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999988764221 1 2228899999999999999999998753
No 100
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.11 E-value=0.00081 Score=60.27 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=33.8
Q ss_pred ceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccc-cCCCCEEEecCCCCCC---cccccCCCCCcEEEcCC
Q 042869 345 RFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGL-LQNLQTLSLENCKLGD---MAIIGDLKKLEILTLRG 420 (707)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~ 420 (707)
..++++.|.+..++. |..++.|..|.+++|.|+.+-..+.. +++|..|.|.+|.+.. ...+..++.|++|.+-+
T Consensus 45 d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 344444444444332 44455555555555555554333332 2235555555444332 23333444444444444
Q ss_pred Cch
Q 042869 421 SNM 423 (707)
Q Consensus 421 ~~l 423 (707)
|.+
T Consensus 123 Npv 125 (233)
T KOG1644|consen 123 NPV 125 (233)
T ss_pred Cch
Confidence 433
No 101
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.11 E-value=0.0016 Score=57.76 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.+++..... -..++++...+..........+... ............++.++|+||
T Consensus 28 ~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~lilDe 92 (151)
T cd00009 28 PGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------------LVRLLFELAEKAKPGVLFIDE 92 (151)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------------hHhHHHHhhccCCCeEEEEeC
Confidence 6999999999999987532 2345666654433322111111000 000111111123578999999
Q ss_pred CCCc-----ccccccccccCCC---CCCeEEEEeeCCcc
Q 042869 82 IWGS-----LDLEAIGIPFADN---NSGCKVLLTARSQD 112 (707)
Q Consensus 82 v~~~-----~~~~~l~~~l~~~---~~gs~iivTtr~~~ 112 (707)
++.. ..+..+....... ..+.+||+||....
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 93 IDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 9853 1222222222111 35778888888654
No 102
>PRK09087 hypothetical protein; Validated
Probab=97.09 E-value=0.0021 Score=61.45 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=57.7
Q ss_pred EEEEeCCCCcc-cccccccccC-CCCCCeEEEEeeCCcccc--------ccccCCcceEEeecCChHHHHHHHHhhhcCC
Q 042869 76 LIILDDIWGSL-DLEAIGIPFA-DNNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDC 145 (707)
Q Consensus 76 LlVlDdv~~~~-~~~~l~~~l~-~~~~gs~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~ 145 (707)
+|++||+.... +-+++...+. -...|..||+|++...-. .........+++++++.++-.+++.+.+...
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 78889996432 1111221111 112367789988752211 1123445689999999999999999888532
Q ss_pred CCCchhHHHHHHHHHHcCCcchHHHH
Q 042869 146 RENGELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 146 ~~~~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
.-.-.+++..-|++.+.|..-++..
T Consensus 170 -~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 170 -QLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred -CCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 1122356677788888877666554
No 103
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.05 E-value=0.0044 Score=69.31 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=54.2
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc----ccccccCCcceEEeecCChHHHHHHHHhhhcC-
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD----VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGD- 144 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~----v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~- 144 (707)
+++.++|+|||+.. .+++.+... ...|+.++|+++.+. +..........+.+++++.++...++.+.+..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~---lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPW---VENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHH---hcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 35789999999744 344444432 234666666433322 11111111357899999999999998876631
Q ss_pred -----CCCCchhHHHHHHHHHHcCCcc
Q 042869 145 -----CRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 145 -----~~~~~~~~~~~~~i~~~c~g~P 166 (707)
.....-..+....|++.+.|..
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1112223556778888888764
No 104
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.04 E-value=0.0085 Score=61.31 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=57.4
Q ss_pred cEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCch
Q 042869 74 KILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGE 150 (707)
Q Consensus 74 r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 150 (707)
+-++++|+++... ....+...+......+++|+++.... +..........+++.+++.++....+.+.+...... -
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~-i 181 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE-I 181 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC-C
Confidence 5689999987542 23344333333334567777775432 211111223468999999999988888777532211 2
Q ss_pred hHHHHHHHHHHcCCcchHH
Q 042869 151 LKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Plai 169 (707)
..+....+++.++|.+--+
T Consensus 182 ~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 182 TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 2456788899999987553
No 105
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.0053 Score=67.22 Aligned_cols=100 Identities=8% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ...+.+...+-......++|++|.+.+ +...-..-...|.+.+++.++....+.+.+.....
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i- 196 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI- 196 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 56679999999754 345555544433334556666666643 32211122367899999999999888876632211
Q ss_pred chhHHHHHHHHHHcCCcchHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
....+....|++.++|.+-.+..+
T Consensus 197 ~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 197 PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112345678999999988644433
No 106
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=0.00011 Score=61.18 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=47.4
Q ss_pred hcCCCCccEEEecCCCcccCCcccccc-CCCCEEEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEE
Q 042869 362 FTGMTELRVLDFTQMYLLALPSSLGLL-QNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLL 439 (707)
Q Consensus 362 ~~~l~~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 439 (707)
+.....|...++++|.+.+.|..+... +.+..|++.+|.+.+ |..+..++.|+.|+++.|.+...|.-+..|.+|-.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 344556666677777777666655332 355566666666555 445555566666666666555555555555555555
Q ss_pred cCCC
Q 042869 440 DLSN 443 (707)
Q Consensus 440 ~l~~ 443 (707)
+..+
T Consensus 129 ds~~ 132 (177)
T KOG4579|consen 129 DSPE 132 (177)
T ss_pred cCCC
Confidence 5544
No 107
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.99 E-value=0.0037 Score=60.31 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||+||+++++..... -..+.++.+..... ....+.+.+.+ --+|++||
T Consensus 54 ~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~------------------------~~~~~~~~~~~--~dlliiDd 105 (235)
T PRK08084 54 EGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW------------------------FVPEVLEGMEQ--LSLVCIDN 105 (235)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh------------------------hhHHHHHHhhh--CCEEEEeC
Confidence 6999999999999875532 23455665432100 00112222221 24899999
Q ss_pred CCCc---ccccccc-cccCC-CCCC-eEEEEeeCCcccc--------ccccCCcceEEeecCChHHHHHHHHhhhcCCCC
Q 042869 82 IWGS---LDLEAIG-IPFAD-NNSG-CKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRE 147 (707)
Q Consensus 82 v~~~---~~~~~l~-~~l~~-~~~g-s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 147 (707)
+... .+|+... ..+.. ...| .++|+||+...-. ..+.....+++++++++++-.+++.+++....
T Consensus 106 i~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~- 184 (235)
T PRK08084 106 IECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG- 184 (235)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-
Confidence 9753 3444221 11111 1123 3789999864221 11223345899999999999999887664321
Q ss_pred CchhHHHHHHHHHHcCCcchHHH
Q 042869 148 NGELKSVAAEIVKECAGLPIAIV 170 (707)
Q Consensus 148 ~~~~~~~~~~i~~~c~g~Plai~ 170 (707)
-.-.+++..-|++.+.|..-++.
T Consensus 185 ~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 185 FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred CCCCHHHHHHHHHhhcCCHHHHH
Confidence 12224566777777776654433
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.012 Score=63.37 Aligned_cols=100 Identities=8% Similarity=0.050 Sum_probs=60.1
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ..++.+...+-.......+|++|.+. .+..........+++.+++.++..+.+.+.+.....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi- 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI- 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-
Confidence 45679999999754 34555555554433456666555553 332211222468899999999988777775532211
Q ss_pred chhHHHHHHHHHHcCCcch-HHHHH
Q 042869 149 GELKSVAAEIVKECAGLPI-AIVPI 172 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pl-ai~~~ 172 (707)
....+....|++.++|.+- |+..+
T Consensus 197 ~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 197 NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1223456788889998663 44433
No 109
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0078 Score=61.45 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=66.1
Q ss_pred HHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChH
Q 042869 60 VRAGRLLERLK----KEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEK 132 (707)
Q Consensus 60 ~~~~~~~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~ 132 (707)
+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-....+..+|++|... .+......-...+.+.+++.+
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~ 203 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDD 203 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHH
Confidence 44455555544 346679999999854 33444444443222344445545443 333211122358999999999
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHH
Q 042869 133 EAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIA 173 (707)
Q Consensus 133 ~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 173 (707)
+..+++.+...... -..+....+++.++|.|..+..+.
T Consensus 204 ~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 204 ELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred HHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999987432211 113456789999999998665443
No 110
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0096 Score=63.36 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=59.6
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ...+.+...+........+|++|.+ ..+..........+++.+++.++....+.+.+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi- 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI- 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-
Confidence 35679999999744 3344454444332334455555554 2232212223458899999999988888877642211
Q ss_pred chhHHHHHHHHHHcCC-cchHHHHHHH
Q 042869 149 GELKSVAAEIVKECAG-LPIAIVPIAK 174 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g-~Plai~~~~~ 174 (707)
.-..+....|++.++| ++.|+..+-.
T Consensus 195 ~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 195 EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1123556778887765 4566666554
No 111
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.91 E-value=0.011 Score=67.91 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=77.1
Q ss_pred CCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhccC-------ChhHHHHHHHHH
Q 042869 119 DCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKALKNK-------SPYEWRNALRQL 191 (707)
Q Consensus 119 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~-------~~~~w~~~l~~l 191 (707)
.....+.+.+|+..+...+.....+.... ...+....|+++-.|+|+-+..+-..+... +...|..-...+
T Consensus 209 ~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 209 TNITTITLAPLSRADTNQLVAATLGCTKL--LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred CceeEEecCcCchhhHHHHHHHHhCCccc--ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 44568999999999999999887765222 224568899999999999999998888632 344454333222
Q ss_pred HHhhccCCCccccccceeeeeeecccCChHHHHHHHHHhcccc-ccchhhhHHh
Q 042869 192 ERTFLRSFSGTQAVAAYSTIELSYYQLEGEELRQTFLLIGYTF-ISCVKDVIYY 244 (707)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~~~fp-~~~~~~li~~ 244 (707)
.... ..+.+.+.+..-.+.||+. .++.....|++- .|+.+.+-..
T Consensus 287 ~~~~-------~~~~vv~~l~~rl~kL~~~-t~~Vl~~AA~iG~~F~l~~La~l 332 (849)
T COG3899 287 GILA-------TTDAVVEFLAARLQKLPGT-TREVLKAAACIGNRFDLDTLAAL 332 (849)
T ss_pred CCch-------hhHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCccCCHHHHHHH
Confidence 1110 0111333456667889888 688888888875 6665555443
No 112
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.90 E-value=0.00061 Score=74.36 Aligned_cols=111 Identities=23% Similarity=0.245 Sum_probs=69.1
Q ss_pred ccCCCCEEEecCCC-CCC---cccccCCCCCcEEEcCCC--chhh----chHHhhcCcCCCEEcCCCCCCCcccch-hhh
Q 042869 387 LLQNLQTLSLENCK-LGD---MAIIGDLKKLEILTLRGS--NMQK----LVEEIGRLTQLRLLDLSNCSKLKVIPA-YVI 455 (707)
Q Consensus 387 ~l~~L~~L~l~~~~-~~~---~~~i~~l~~L~~L~l~~~--~l~~----lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~~ 455 (707)
.+++|+.|.+.+|. +.. ......+++|+.|+++++ .... .......+.+|+.|+++.|..++...- .+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46788888888885 443 245567888999998873 1111 122334568888888888775554442 222
Q ss_pred hCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccC
Q 042869 456 SSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDE 507 (707)
Q Consensus 456 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 507 (707)
..+++|+.|.+..|... ...........+++|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~l----------t~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNL----------TDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCcc----------chhHHHHHHHhcCcccEEeeecCcc
Confidence 34778888887766521 1233334455677788888886553
No 113
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.011 Score=62.67 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=60.0
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++... +..+.+...+-......++|++|... .+...-......+++.+++.++....+.+.+......
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~- 194 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE- 194 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-
Confidence 5568999999754 33555555554434567777766543 3322112234578999999999998888877532221
Q ss_pred hhHHHHHHHHHHcCCcchH
Q 042869 150 ELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Pla 168 (707)
-..+....|++.++|.+-.
T Consensus 195 i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 195 HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 1234567889999887754
No 114
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.0088 Score=62.01 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=59.3
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|+++.. ...+.+...+-....+..+|++|.+.. +...-..-...+.+.+++.++..+.+.+..+ .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~-- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V-- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C--
Confidence 34568888999854 334445444433344666777776643 3221112235889999999999888875432 1
Q ss_pred chhHHHHHHHHHHcCCcchHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
..+.+..+++.++|.|..+..+
T Consensus 192 --~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 --DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHH
Confidence 1344778899999999755433
No 115
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0068 Score=65.22 Aligned_cols=97 Identities=8% Similarity=0.051 Sum_probs=57.3
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
++.-++|+|+|... +..+.+...+-......++|++|.+.. +...-......+++.+++.++....+.+.+......
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 345555554433344677777666533 221111223467899999988777766655322111
Q ss_pred chhHHHHHHHHHHcCCcchHH
Q 042869 149 GELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai 169 (707)
. ..+....|++.++|.+..+
T Consensus 198 ~-~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 198 F-ENAALDLLARAANGSVRDA 217 (509)
T ss_pred C-CHHHHHHHHHHcCCcHHHH
Confidence 1 1334667888888877543
No 116
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.87 E-value=0.0098 Score=57.97 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=97.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCC----cEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFE----KVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 77 (707)
+|.|||++++++.........=+ .++.|.+...++...+...|+.+++.+............++.+.+..-+-=+|
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmL 149 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRML 149 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 58999999999997654321111 35566777888999999999999999876665444444445555554445689
Q ss_pred EEeCCCCc-----cccccccc---ccCCCCCCeEEEEeeCCcccccc----ccCCcceEEeecCChHH-HHHHHHhhhc-
Q 042869 78 ILDDIWGS-----LDLEAIGI---PFADNNSGCKVLLTARSQDVLSC----KMDCQQNFFVDVLNEKE-AWSLFKKMTG- 143 (707)
Q Consensus 78 VlDdv~~~-----~~~~~l~~---~l~~~~~gs~iivTtr~~~v~~~----~~~~~~~~~l~~L~~~~-a~~Lf~~~~~- 143 (707)
|+|.+.+. .+-.++.. .+...-.=+-|.+-|++---+-. ...-..++.++.-..++ ...|+.....
T Consensus 150 IIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~ 229 (302)
T PF05621_consen 150 IIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERA 229 (302)
T ss_pred EeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHh
Confidence 99999653 11111211 22122223445555554222100 00112355555555443 4444433221
Q ss_pred ---CCCCCchhHHHHHHHHHHcCCcchHHHH
Q 042869 144 ---DCRENGELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 144 ---~~~~~~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
.....-...+++..|...++|+.--+..
T Consensus 230 LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 230 LPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred CCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 2222233467899999999998754443
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0077 Score=64.99 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=55.7
Q ss_pred cEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCch
Q 042869 74 KILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGE 150 (707)
Q Consensus 74 r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 150 (707)
+-++|+|++... ..++.+...+-.......+|++|... .+...-......+++.+++.++....+.+.+...... -
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-I 198 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-I 198 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-C
Confidence 446999999754 34555555443333355565555443 2221111223578999999999988888766422111 1
Q ss_pred hHHHHHHHHHHcCCcch
Q 042869 151 LKSVAAEIVKECAGLPI 167 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Pl 167 (707)
..+.+..+++.++|.+-
T Consensus 199 s~eal~~La~lS~GdlR 215 (605)
T PRK05896 199 EDNAIDKIADLADGSLR 215 (605)
T ss_pred CHHHHHHHHHHcCCcHH
Confidence 13457788999998664
No 118
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.84 E-value=0.0064 Score=59.57 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=71.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.+........ ..+|..|-...-..-.++|+++-... ..+ .++|..|++|.
T Consensus 171 pG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~---------------~~l-~krkTilFiDE 230 (554)
T KOG2028|consen 171 PGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE---------------KSL-TKRKTILFIDE 230 (554)
T ss_pred CCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH---------------Hhh-hcceeEEEeHH
Confidence 79999999999998766543 44666664433333334444331111 112 24789999999
Q ss_pred CC--CcccccccccccCCCCCCeEEEE--eeCCcccc--ccccCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IW--GSLDLEAIGIPFADNNSGCKVLL--TARSQDVL--SCKMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~--~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v~--~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
|. +..|-+.+ +|--.+|+-++| ||.+...- ......-.++-++.|..++-..++.+..
T Consensus 231 iHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 231 IHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 95 33444432 233456777777 55554321 0011223478899999999999888743
No 119
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.059 Score=58.44 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||.|++++++.......-..+++++ ..++..++...+... ....+.+.+.+ -=+|||||
T Consensus 323 sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~~~f~~~y~~--~DLLlIDD 385 (617)
T PRK14086 323 SGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KGDSFRRRYRE--MDILLVDD 385 (617)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cHHHHHHHhhc--CCEEEEeh
Confidence 59999999999999765421112345554 344555554433221 11223333332 35899999
Q ss_pred CCCc---ccccc-cccccCC-CCCCeEEEEeeCCcc--cc------ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGS---LDLEA-IGIPFAD-NNSGCKVLLTARSQD--VL------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~---~~~~~-l~~~l~~-~~~gs~iivTtr~~~--v~------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+... +.|.. +...+.. ...|..|||||+... +. .......-.++++..+.+.-..++.+++.... .
T Consensus 386 Iq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~-l 464 (617)
T PRK14086 386 IQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-L 464 (617)
T ss_pred hccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-C
Confidence 9754 22221 2211111 123556888887631 11 11233345789999999999999998875321 1
Q ss_pred chhHHHHHHHHHHcCCcch
Q 042869 149 GELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pl 167 (707)
.-.+++..-|++.+.+..-
T Consensus 465 ~l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 465 NAPPEVLEFIASRISRNIR 483 (617)
T ss_pred CCCHHHHHHHHHhccCCHH
Confidence 1224566667777665543
No 120
>PRK04195 replication factor C large subunit; Provisional
Probab=96.80 E-value=0.017 Score=62.41 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=80.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|++++++.. |+ .+-++++...+.. ....++....... .+.+.++-+||+|+
T Consensus 48 pG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i~~~~~~~---------------sl~~~~~kvIiIDE 106 (482)
T PRK04195 48 PGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVAGEAATSG---------------SLFGARRKLILLDE 106 (482)
T ss_pred CCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHHHHhhccC---------------cccCCCCeEEEEec
Confidence 79999999999998763 32 2333444433322 2222222111100 01112578999999
Q ss_pred CCCccc------ccccccccCCCCCCeEEEEeeCCccccc--cccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHH
Q 042869 82 IWGSLD------LEAIGIPFADNNSGCKVLLTARSQDVLS--CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKS 153 (707)
Q Consensus 82 v~~~~~------~~~l~~~l~~~~~gs~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~ 153 (707)
++.... +..+...+. ..+..||+|+.+..-.. ........+.+.+++.++....+.+.+...... -..+
T Consensus 107 aD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~e 183 (482)
T PRK04195 107 VDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDE 183 (482)
T ss_pred CcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHH
Confidence 986422 333333332 22345666665532111 111234578899999999888888776422211 1245
Q ss_pred HHHHHHHHcCCcchHHHH
Q 042869 154 VAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 154 ~~~~i~~~c~g~Plai~~ 171 (707)
....|++.++|-.-.+..
T Consensus 184 aL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 184 ALKEIAERSGGDLRSAIN 201 (482)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 678899999987655443
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.78 E-value=0.011 Score=58.74 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=63.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.++.............++.++. .++ +..+-... ......+.+.. ..-+|+||+
T Consensus 67 pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~------~~~~~~~~~~a---~~gvL~iDE 129 (284)
T TIGR02880 67 PGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT------APKTKEILKRA---MGGVLFIDE 129 (284)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc------hHHHHHHHHHc---cCcEEEEec
Confidence 79999999988887654332222222443331 122 22211111 01122233332 246889999
Q ss_pred CCCc-----------ccccccccccCCCCCCeEEEEeeCCcccccc-------ccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGS-----------LDLEAIGIPFADNNSGCKVLLTARSQDVLSC-------KMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-------~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
+... +.++.+...+.....+-+||.++........ .......+++++++.+|-.+++...+.
T Consensus 130 i~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 130 AYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 9632 1122233333233345566666554322110 011135789999999999999887664
No 122
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.014 Score=63.80 Aligned_cols=99 Identities=8% Similarity=0.048 Sum_probs=61.4
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
++.-++|||+|... ..++.+...+-......++|++|.+ ..+......-...++++.++.++..+.+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558999999855 3455565555433345666666655 33322112224678999999999988888776432211
Q ss_pred chhHHHHHHHHHHcCCcchHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
...+....|++.++|.+-.+..
T Consensus 203 -ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 203 -AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 1234578888899987754433
No 123
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.0017 Score=66.60 Aligned_cols=108 Identities=10% Similarity=0.022 Sum_probs=67.2
Q ss_pred HHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChH
Q 042869 60 VRAGRLLERLK----KEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEK 132 (707)
Q Consensus 60 ~~~~~~~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~ 132 (707)
+.+..+.+.+. .+.+-++|+|+++.. ...+.+...+-.-..+..+|++|.+.... .........+.+.+++.+
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~ 203 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPE 203 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHH
Confidence 34444444443 245679999999754 34555554443333466677777765432 221223457899999999
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHH
Q 042869 133 EAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 133 ~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
+..+++.+..... ..+....+++.++|.|..+..+
T Consensus 204 ~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 204 DVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999998764221 1122367899999999866554
No 124
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0071 Score=63.44 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=59.9
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++... ..++.+...+......+.+|++|.. ..+..........+++.+++.++..+.+.+.+.... ..
T Consensus 127 ~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~ 205 (397)
T PRK14955 127 RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-IS 205 (397)
T ss_pred CeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CC
Confidence 4668999999754 3566666555444446666666644 333221112235788999999998888877663211 11
Q ss_pred hhHHHHHHHHHHcCCcchHH
Q 042869 150 ELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai 169 (707)
-..+.+..+++.++|.+--+
T Consensus 206 i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 22456888999999977533
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.74 E-value=0.008 Score=57.92 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||+||+++++....+ .. ...+++..... ..+ ... . ..-+||+||
T Consensus 51 ~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~------~~~----------------------~~~-~-~~~~liiDd 98 (227)
T PRK08903 51 AGSGRSHLLQALVADASYG-GR-NARYLDAASPL------LAF----------------------DFD-P-EAELYAVDD 98 (227)
T ss_pred CCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhH------HHH----------------------hhc-c-cCCEEEEeC
Confidence 6999999999999875332 12 23444432210 000 011 1 234789999
Q ss_pred CCCcccc--cccccccCCC-CCCe-EEEEeeCCcccccc-------ccCCcceEEeecCChHHHHHHHHhhhcCCCCCch
Q 042869 82 IWGSLDL--EAIGIPFADN-NSGC-KVLLTARSQDVLSC-------KMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGE 150 (707)
Q Consensus 82 v~~~~~~--~~l~~~l~~~-~~gs-~iivTtr~~~v~~~-------~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 150 (707)
+.....+ +.+...+... ..+. .||+|++....... .......+++.++++++-..++.+.+.... ..-
T Consensus 99 i~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l 177 (227)
T PRK08903 99 VERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQL 177 (227)
T ss_pred hhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCC
Confidence 9754322 1222222111 2344 35666654321110 112235789999999877777766443211 122
Q ss_pred hHHHHHHHHHHcCCcchHHHHHHHHh
Q 042869 151 LKSVAAEIVKECAGLPIAIVPIAKAL 176 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Plai~~~~~~l 176 (707)
.++....+++.+.|.+..+..+...+
T Consensus 178 ~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 178 ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 34567788888999988776665544
No 126
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.73 E-value=0.016 Score=53.80 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=43.5
Q ss_pred EEEEeeCCccccccccCCcc-eEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhc
Q 042869 103 KVLLTARSQDVLSCKMDCQQ-NFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKALK 177 (707)
Q Consensus 103 ~iivTtr~~~v~~~~~~~~~-~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~ 177 (707)
-|=-|||...+.....+-.. ...++..+.+|-.++..+.+.-... +-.++.+.+|++++.|-|--+.-+-+.++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34447777555432122222 3479999999999999887753222 22356799999999999976655544443
No 127
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.73 E-value=0.015 Score=61.39 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=84.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||+||+++++....+..=..+++++ ..++..++...+... ......+.+.+ .-+||+||
T Consensus 145 ~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~---------~~~~~~~~~~~--~dlLiiDD 207 (405)
T TIGR00362 145 VGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN---------KMEEFKEKYRS--VDLLLIDD 207 (405)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC---------CHHHHHHHHHh--CCEEEEeh
Confidence 69999999999999876541112355654 334444454444321 11223333332 34899999
Q ss_pred CCCccc---c-cccccccCC-CCCCeEEEEeeCCcc--cc------ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGSLD---L-EAIGIPFAD-NNSGCKVLLTARSQD--VL------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~~~---~-~~l~~~l~~-~~~gs~iivTtr~~~--v~------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+..... + +.+...+.. ...|..+|+|+.... +. .........+++++.+.++-..++.+.+.... .
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~-~ 286 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG-L 286 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-C
Confidence 975421 1 112211111 123456788776521 11 11222234689999999999999998875321 1
Q ss_pred chhHHHHHHHHHHcCCcchHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIV 170 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~ 170 (707)
.-.+++..-|++.+.|..-.+.
T Consensus 287 ~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 287 ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred CCCHHHHHHHHHhcCCCHHHHH
Confidence 1225667778888887765433
No 128
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.70 E-value=0.015 Score=62.34 Aligned_cols=172 Identities=16% Similarity=0.188 Sum_probs=95.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||+||+++.+....+..-..+++++. .++..++...+... ......+.+. +.-+||+||
T Consensus 157 ~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~~~~~--~~dlLiiDD 219 (450)
T PRK00149 157 VGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN---------TMEEFKEKYR--SVDVLLIDD 219 (450)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC---------cHHHHHHHHh--cCCEEEEeh
Confidence 699999999999998764421122455543 33444444443221 1123334443 245899999
Q ss_pred CCCccc---c-cccccccCC-CCCCeEEEEeeCCcc--cc------ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGSLD---L-EAIGIPFAD-NNSGCKVLLTARSQD--VL------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~~~---~-~~l~~~l~~-~~~gs~iivTtr~~~--v~------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+..... + +.+...+.. ...|..||+||.... +. .........+++++.+.++-..++.+.+... ..
T Consensus 220 i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~ 298 (450)
T PRK00149 220 IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GI 298 (450)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CC
Confidence 974311 1 122211110 123456888876532 11 1122333578999999999999999888532 11
Q ss_pred chhHHHHHHHHHHcCCcchHHHH----HHHHh--ccC--ChhHHHHHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVP----IAKAL--KNK--SPYEWRNALRQL 191 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~----~~~~l--~~~--~~~~w~~~l~~l 191 (707)
.-..++..-|++.+.|..-.+.. +..+- .++ +.+..++++..+
T Consensus 299 ~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 299 DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 22346678888888887654332 22221 122 556666666654
No 129
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00014 Score=68.06 Aligned_cols=60 Identities=18% Similarity=0.099 Sum_probs=28.9
Q ss_pred CCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC
Q 042869 341 CPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD 403 (707)
Q Consensus 341 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 403 (707)
+.+.+-|+++++.+.++. +..+|+.|.+|.|+-|.|+.+. .+..|++|+.|.|+.|.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc
Confidence 344555555555554442 2344555555555555555442 23444444444444444433
No 130
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.013 Score=64.01 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=59.0
Q ss_pred CCcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++.... ..+.+...+-......++|++|.+.. +..........+.+..++.++....+.+.+......
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456799999997553 23444444433234566777776543 221111122467788999999988888776432211
Q ss_pred chhHHHHHHHHHHcCCcchHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIV 170 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~ 170 (707)
-..+....|++.++|.+.-+.
T Consensus 198 -id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 198 -YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred -cCHHHHHHHHHHhCCCHHHHH
Confidence 123457889999999885443
No 131
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00016 Score=67.76 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhhch--HHhhcCcCCCEEcCC
Q 042869 365 MTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLS 442 (707)
Q Consensus 365 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~ 442 (707)
+.+.+.|++-++.+..+. -+.+++.|++|.|+-|+|+....+..+++|+.|+|+.|.+..+- ..+.++++|+.|.+.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445566666666655532 23456677777777777777666777777777777776555443 245566777777776
Q ss_pred CCCCCcccch----hhhhCCCCCcEEE
Q 042869 443 NCSKLKVIPA----YVISSLSRLEELY 465 (707)
Q Consensus 443 ~~~~~~~~p~----~~~~~l~~L~~L~ 465 (707)
.|+..+..+. .++.-|++|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 6655554443 2344556666554
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.015 Score=58.80 Aligned_cols=95 Identities=9% Similarity=0.127 Sum_probs=59.4
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-.+|+|+++.- +..+.+.+.+-.-..++.+|+||.+.... ..-..--..+.+.+++.+++.+.+.+.... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C---
Confidence 3445567999854 44555554443333467777888775433 211122357889999999999888765311 1
Q ss_pred hhHHHHHHHHHHcCCcchHHHHH
Q 042869 150 ELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
..+.+..++..++|.|..+..+
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567789999999765544
No 133
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.0064 Score=57.13 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCCCccEEEecCCCccc-----CCccccccCCCCEEEecCC
Q 042869 364 GMTELRVLDFTQMYLLA-----LPSSLGLLQNLQTLSLENC 399 (707)
Q Consensus 364 ~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~ 399 (707)
-+..+..+++|+|.|.. +...|.+-.+|+..++++-
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ 68 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA 68 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence 36677778888877755 3333445556666666543
No 134
>PRK04132 replication factor C small subunit; Provisional
Probab=96.61 E-value=0.031 Score=63.20 Aligned_cols=151 Identities=12% Similarity=0.048 Sum_probs=90.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.++||||+|.+++++.-....-...+-+++|...+...+. ++++.+....+ +.+.+.-++|+|+
T Consensus 575 h~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~KVvIIDE 638 (846)
T PRK04132 575 TVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFKIIFLDE 638 (846)
T ss_pred CcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCEEEEEEC
Confidence 3789999999999986443211236677888766655433 33332211100 0112457999999
Q ss_pred CCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 042869 82 IWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEI 158 (707)
Q Consensus 82 v~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i 158 (707)
++.. +..+.+...+-......++|.+|.+..-. ..-..-...+.+.+++.++-...+.+.+...... -..+....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 9865 35555555443334466777777764432 1111223578999999998888777665421111 124568899
Q ss_pred HHHcCCcchHH
Q 042869 159 VKECAGLPIAI 169 (707)
Q Consensus 159 ~~~c~g~Plai 169 (707)
++.++|-+-.+
T Consensus 718 a~~s~GDlR~A 728 (846)
T PRK04132 718 LYIAEGDMRRA 728 (846)
T ss_pred HHHcCCCHHHH
Confidence 99999988443
No 135
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.60 E-value=0.1 Score=55.39 Aligned_cols=144 Identities=12% Similarity=0.121 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||+||+++.+..... ...+++++ ..++...+...+... ......+... +.-+|++||
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~---------~~~~f~~~~~--~~dvLiIDD 210 (445)
T PRK12422 150 EGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG---------EMQRFRQFYR--NVDALFIED 210 (445)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc---------hHHHHHHHcc--cCCEEEEcc
Confidence 6999999999999977543 23345554 334444555444321 0112222222 345889999
Q ss_pred CCCcccc----cccccccCC-CCCCeEEEEeeCCcc-----cc---ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGSLDL----EAIGIPFAD-NNSGCKVLLTARSQD-----VL---SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~~~~----~~l~~~l~~-~~~gs~iivTtr~~~-----v~---~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+...... +++...+.. ...|..||+||.... +. ..+....-.+++++++.++-..++.+.+.... .
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-~ 289 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-I 289 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-C
Confidence 9754221 112111110 113557888886521 11 11223335788999999999999988775321 1
Q ss_pred chhHHHHHHHHHHcCCc
Q 042869 149 GELKSVAAEIVKECAGL 165 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~ 165 (707)
.-..++..-|++.+.+.
T Consensus 290 ~l~~evl~~la~~~~~d 306 (445)
T PRK12422 290 RIEETALDFLIEALSSN 306 (445)
T ss_pred CCCHHHHHHHHHhcCCC
Confidence 12244555566666644
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=96.59 E-value=0.021 Score=56.79 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.++........-...-|+.++ ..++..... + ... .....+.+.- ..-.|++|+
T Consensus 68 pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~~---g-~~~------~~~~~~l~~a---~ggVLfIDE 130 (287)
T CHL00181 68 PGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQYI---G-HTA------PKTKEVLKKA---MGGVLFIDE 130 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHHh---c-cch------HHHHHHHHHc---cCCEEEEEc
Confidence 7999999999998865332111111244333 222222211 1 110 0112222222 235899999
Q ss_pred CCCc-----------ccccccccccCCCCCCeEEEEeeCCccccc-------cccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGS-----------LDLEAIGIPFADNNSGCKVLLTARSQDVLS-------CKMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-------~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
+... +..+.+...+.....+.+||.++....+.. ........+.+++++.++..+++.+.+.
T Consensus 131 ~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 131 AYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred cchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 9642 112222222223334556666665433211 0112245788999999999888887764
No 137
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.58 E-value=0.027 Score=58.52 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|+++.. ...+.+...+........+|++|.+.. +..........+++.+++.++..+.+...+..... .
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~ 195 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-K 195 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-C
Confidence 4568999998654 334455444433334566777776543 22111122357888999999988888876642211 1
Q ss_pred hhHHHHHHHHHHcCCcchHHHHHH
Q 042869 150 ELKSVAAEIVKECAGLPIAIVPIA 173 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai~~~~ 173 (707)
-..+.+..+++.++|.|..+....
T Consensus 196 i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHHcCCChHHHHHHH
Confidence 123567888999999886554443
No 138
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.019 Score=62.33 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=63.3
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-+||+|++... ..++.+...+-.......+|++|.+. .+..........+++..++.++....+.+.+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi- 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV- 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-
Confidence 45679999999755 34555554443223355666666653 332111122347889999999999888876643211
Q ss_pred chhHHHHHHHHHHcCCcc-hHHHHHHHHh
Q 042869 149 GELKSVAAEIVKECAGLP-IAIVPIAKAL 176 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~P-lai~~~~~~l 176 (707)
.-..+.+..|++.++|.+ .|+..+...+
T Consensus 197 ~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 122456788888999865 5666665443
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.57 E-value=0.022 Score=60.48 Aligned_cols=172 Identities=14% Similarity=0.162 Sum_probs=94.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCC-cEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFE-KVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+|||+||+++++..... ..+ .++|++. .++..++...+.... .....+.... +.-+|++|
T Consensus 139 ~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~~---------~~~f~~~~~~-~~dvLlID 201 (440)
T PRK14088 139 VGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEGK---------LNEFREKYRK-KVDVLLID 201 (440)
T ss_pred CCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhccc---------HHHHHHHHHh-cCCEEEEe
Confidence 6999999999999987543 233 3566653 455666655543211 1223333322 34589999
Q ss_pred CCCCcc---cc-cccccccCC-CCCCeEEEEeeCC-cccc-------ccccCCcceEEeecCChHHHHHHHHhhhcCCCC
Q 042869 81 DIWGSL---DL-EAIGIPFAD-NNSGCKVLLTARS-QDVL-------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRE 147 (707)
Q Consensus 81 dv~~~~---~~-~~l~~~l~~-~~~gs~iivTtr~-~~v~-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 147 (707)
|+.... .+ +++...+.. ...|..||+||.. ..-. ..+....-.+++++.+.++-..++.+.+....
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~- 280 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH- 280 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC-
Confidence 997431 11 122211110 1224578888853 2211 11122334788999999999999988875221
Q ss_pred CchhHHHHHHHHHHcCCcchHHHHHHHHh------cc--CChhHHHHHHHHH
Q 042869 148 NGELKSVAAEIVKECAGLPIAIVPIAKAL------KN--KSPYEWRNALRQL 191 (707)
Q Consensus 148 ~~~~~~~~~~i~~~c~g~Plai~~~~~~l------~~--~~~~~w~~~l~~l 191 (707)
..-..++..-|++.+.|.--.+.-+-..+ .+ .+.+..++++..+
T Consensus 281 ~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 281 GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 11225667788888877543333222221 12 2566666666654
No 140
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.02 Score=62.18 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=58.0
Q ss_pred CCcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++.... ..+.+...+-.......+|++|.+.+ +..........++++.++.++....+.+.+......
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456799999997553 34555544433334666777666543 221111113578899999999888887766422111
Q ss_pred chhHHHHHHHHHHcCCcch
Q 042869 149 GELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pl 167 (707)
...+....|++.++|.+-
T Consensus 198 -~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 198 -FDATALQLLARAAAGSMR 215 (527)
T ss_pred -CCHHHHHHHHHHcCCCHH
Confidence 123456788889999775
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.56 E-value=0.013 Score=61.22 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=73.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... |+.++. .++.... .+. .......+++........+|+|||
T Consensus 174 pGtGKT~lAkaia~~~~~~-------~i~v~~----~~l~~~~---~g~-------~~~~i~~~f~~a~~~~p~IlfiDE 232 (389)
T PRK03992 174 PGTGKTLLAKAVAHETNAT-------FIRVVG----SELVQKF---IGE-------GARLVRELFELAREKAPSIIFIDE 232 (389)
T ss_pred CCCChHHHHHHHHHHhCCC-------EEEeeh----HHHhHhh---ccc-------hHHHHHHHHHHHHhcCCeEEEEec
Confidence 7999999999999865432 222221 1111111 010 112233344443344578999999
Q ss_pred CCCcc------------c----ccccccccCC--CCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------D----LEAIGIPFAD--NNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... + ...+...+.. ...+.+||.||......... ......++++..+.++..++|.
T Consensus 233 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 233 IDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILK 312 (389)
T ss_pred hhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHH
Confidence 97431 0 1111111111 12355677777664433211 1224578999999999999999
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGL 165 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~ 165 (707)
.+..+.....+. -...+++.+.|.
T Consensus 313 ~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 313 IHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred HHhccCCCCCcC--CHHHHHHHcCCC
Confidence 877533222111 134566666654
No 142
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=0.12 Score=52.89 Aligned_cols=165 Identities=10% Similarity=0.108 Sum_probs=94.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCC-cEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEP-KILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~k-r~LlVlD 80 (707)
+|.|||.+...++.+......=-.++.++.-.-.....+...|...+.......+...+....+.+...+.+ -+++|+|
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlD 263 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLD 263 (529)
T ss_pred CCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEec
Confidence 699999999999987654211123466655444456677777776663332222323455566666665544 6899999
Q ss_pred CCCCcc--cccccccccC-CCCCCeEEEEeeCCcccc---------cc-ccCCcceEEeecCChHHHHHHHHhhhcCCCC
Q 042869 81 DIWGSL--DLEAIGIPFA-DNNSGCKVLLTARSQDVL---------SC-KMDCQQNFFVDVLNEKEAWSLFKKMTGDCRE 147 (707)
Q Consensus 81 dv~~~~--~~~~l~~~l~-~~~~gs~iivTtr~~~v~---------~~-~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 147 (707)
.++... .-..+-..|. +.-+++|+|+.--...+. .. ..-....+..++.+.++-.++|.++......
T Consensus 264 EmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t 343 (529)
T KOG2227|consen 264 EMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST 343 (529)
T ss_pred hhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc
Confidence 997542 1122222221 233567766643322211 10 1122457788999999999999998864443
Q ss_pred CchhHHHHHHHHHHcCCcc
Q 042869 148 NGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 148 ~~~~~~~~~~i~~~c~g~P 166 (707)
.+........++++|.|.-
T Consensus 344 ~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 344 SIFLNAAIELCARKVAAPS 362 (529)
T ss_pred cccchHHHHHHHHHhccCc
Confidence 3333333444555554443
No 143
>PRK08116 hypothetical protein; Validated
Probab=96.51 E-value=0.0051 Score=60.47 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.||.++++....+ -..+++++ ..+++..+........ ......+.+.+.+ -=||||||
T Consensus 123 ~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~--~dlLviDD 186 (268)
T PRK08116 123 VGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG------KEDENEIIRSLVN--ADLLILDD 186 (268)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc------cccHHHHHHHhcC--CCEEEEec
Confidence 6999999999999987654 23355554 3445555544433211 1112334455543 23899999
Q ss_pred CCCc--ccccc--cccccCC-CCCCeEEEEeeCC
Q 042869 82 IWGS--LDLEA--IGIPFAD-NNSGCKVLLTARS 110 (707)
Q Consensus 82 v~~~--~~~~~--l~~~l~~-~~~gs~iivTtr~ 110 (707)
+... .+|.. +...+.. ...|..+||||..
T Consensus 187 lg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 187 LGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9533 34432 1111111 1245668888875
No 144
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.48 E-value=0.011 Score=51.26 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCC-cEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEP-KILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~k-r~LlVlD 80 (707)
+|+||||+|+.+++..... .+.++.+.-.+. ........+..+.+...... +.+|++|
T Consensus 7 ~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 7 PGTGKTTLARALAQYLGFP-----FIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp TTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CCCCeeHHHHHHHhhcccc-----cccccccccccc----------------cccccccccccccccccccccceeeeec
Confidence 6999999999999986422 233433221100 11112233444445444333 7999999
Q ss_pred CCCCc
Q 042869 81 DIWGS 85 (707)
Q Consensus 81 dv~~~ 85 (707)
|++..
T Consensus 66 e~d~l 70 (132)
T PF00004_consen 66 EIDKL 70 (132)
T ss_dssp TGGGT
T ss_pred cchhc
Confidence 99754
No 145
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.43 E-value=0.032 Score=59.54 Aligned_cols=129 Identities=14% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCCcHHHHHHHHHHHhhhcc---CCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHH----HhcCCc
Q 042869 2 GGIGKTTLVKEVGRQVKENN---LFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLER----LKKEPK 74 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----l~~~kr 74 (707)
+|+|||++|+++++...... ......+++++... + +...... ....+..+++. ...+++
T Consensus 225 PGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e----L----l~kyvGe------te~~ir~iF~~Ar~~a~~g~p 290 (512)
T TIGR03689 225 PGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE----L----LNKYVGE------TERQIRLIFQRAREKASDGRP 290 (512)
T ss_pred CCCcHHHHHHHHHHhhccccccccCCceeEEeccchh----h----cccccch------HHHHHHHHHHHHHHHhhcCCC
Confidence 79999999999999764321 12234444443321 1 1111000 01111222222 223468
Q ss_pred EEEEEeCCCCcc---------cc-----cccccccCCC--CCCeEEEEeeCCccccccc----cCCcceEEeecCChHHH
Q 042869 75 ILIILDDIWGSL---------DL-----EAIGIPFADN--NSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEA 134 (707)
Q Consensus 75 ~LlVlDdv~~~~---------~~-----~~l~~~l~~~--~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a 134 (707)
++|+||+++..- +. ..+...+... ..+..||.||...+..... ..-...++++..+.++.
T Consensus 291 ~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r 370 (512)
T TIGR03689 291 VIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAA 370 (512)
T ss_pred ceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHH
Confidence 999999997431 11 1222222211 1244455555554433211 12345689999999999
Q ss_pred HHHHHhhhcC
Q 042869 135 WSLFKKMTGD 144 (707)
Q Consensus 135 ~~Lf~~~~~~ 144 (707)
.++|.++...
T Consensus 371 ~~Il~~~l~~ 380 (512)
T TIGR03689 371 ADIFSKYLTD 380 (512)
T ss_pred HHHHHHHhhc
Confidence 9999987643
No 146
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.034 Score=61.00 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=60.8
Q ss_pred CcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++.... ..+.+...+-.-...+++|++|.. ..+..........+++..++.++....+.+.+......
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~- 210 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE- 210 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 45689999997553 355555444333445666666543 33322111223578999999999999888876422211
Q ss_pred hhHHHHHHHHHHcCCcchHHHHH
Q 042869 150 ELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
-..+....|++.++|.+.-+...
T Consensus 211 i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 211 VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12355788899999988655443
No 147
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.41 E-value=0.018 Score=58.23 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCc-EEEEEecCC-cCHHHHHHHHHHHhchhhhhcchhh-----HHHHHHHHHHh-cCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEK-VISSRVSQT-PQIKNIQGEIAEKIGLELAEQSHET-----VRAGRLLERLK-KEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~l~-~~k 73 (707)
+|+|||||++.+++..... +-+. ++|+-+.+. ..+.++.+.+...+........... .....+.+++. .|+
T Consensus 142 pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~Gk 220 (380)
T PRK12608 142 PRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGK 220 (380)
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999877553 3344 467666654 4788999998887765432222111 12223334443 478
Q ss_pred cEEEEEeCCCC
Q 042869 74 KILIILDDIWG 84 (707)
Q Consensus 74 r~LlVlDdv~~ 84 (707)
+++||+|++..
T Consensus 221 dVVLvlDsltr 231 (380)
T PRK12608 221 DVVILLDSLTR 231 (380)
T ss_pred CEEEEEeCcHH
Confidence 99999999853
No 148
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.40 E-value=0.0044 Score=64.12 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQG 42 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 42 (707)
++|+|||++|+.+++.......|+.+.||.++...+..+++.
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 689999999999999887666788899999999888877764
No 149
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.33 E-value=0.024 Score=55.82 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=38.1
Q ss_pred cEEEEEeCCCCcc----------cccccccccCCCCCCeEEEEeeCCcccc-------ccccCCcceEEeecCChHHHHH
Q 042869 74 KILIILDDIWGSL----------DLEAIGIPFADNNSGCKVLLTARSQDVL-------SCKMDCQQNFFVDVLNEKEAWS 136 (707)
Q Consensus 74 r~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtr~~~v~-------~~~~~~~~~~~l~~L~~~~a~~ 136 (707)
.-+|++|++.... ..+.+..........-.+|+++...+.. .........+.+++++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 3588999997421 2222332222222333555555443321 0001113467889999999999
Q ss_pred HHHhhhc
Q 042869 137 LFKKMTG 143 (707)
Q Consensus 137 Lf~~~~~ 143 (707)
++.+.+.
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 8887764
No 150
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.024 Score=62.67 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=87.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhh---hh-cchhhHHHHHHHHHHhc----CC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLEL---AE-QSHETVRAGRLLERLKK----EP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~~-~~~~~~~~~~~~~~l~~----~k 73 (707)
.|+||||+|+.++.......... ....++.....+.|....+.+. .. .....+.+..+.+.+.. ++
T Consensus 47 ~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~ 120 (585)
T PRK14950 47 RGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALAR 120 (585)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCC
Confidence 69999999999987653211100 0112233333344433222111 00 01122333344443321 34
Q ss_pred cEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCch
Q 042869 74 KILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGE 150 (707)
Q Consensus 74 r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 150 (707)
+-++|+|++... +..+.+...+......+.+|++|.+. .+..........+++..++.++....+.+.+...... -
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i 199 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-L 199 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-C
Confidence 678999999754 34555544443333456666666543 2222111223578889999999888888776432211 1
Q ss_pred hHHHHHHHHHHcCCcchHHHHH
Q 042869 151 LKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Plai~~~ 172 (707)
..+....+++.++|.+..+...
T Consensus 200 ~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 200 EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CHHHHHHHHHHcCCCHHHHHHH
Confidence 2356788999999988654443
No 151
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.045 Score=60.12 Aligned_cols=95 Identities=9% Similarity=0.020 Sum_probs=57.2
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|+++.. ...+.+...+-.-...+.+|++|.+ ..+..........+++.+++.++....+.+.+.....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi- 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI- 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 34568999998754 3355555554333345565555544 3332211233468999999999988888776532111
Q ss_pred chhHHHHHHHHHHcCCcch
Q 042869 149 GELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pl 167 (707)
.-..+.+..+++.++|..-
T Consensus 205 ~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 QIDADALQLIARKAQGSMR 223 (620)
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 1123557889999999654
No 152
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.28 E-value=0.0066 Score=57.08 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=45.8
Q ss_pred CCccceeeecccccccc----CchhhcCCCCccEEEecCCCccc----CCcc-------ccccCCCCEEEecCCCCCC--
Q 042869 341 CPQLRFLCIGYHASLRI----PSNFFTGMTELRVLDFTQMYLLA----LPSS-------LGLLQNLQTLSLENCKLGD-- 403 (707)
Q Consensus 341 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----lp~~-------i~~l~~L~~L~l~~~~~~~-- 403 (707)
+..+..+++++|.+..- ....+.+-++|++.+++.-.... +|+. +-+|++|+..+|++|.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 55677778887766532 12234456777777777643221 2322 3456666666666666443
Q ss_pred c----ccccCCCCCcEEEcCCCch
Q 042869 404 M----AIIGDLKKLEILTLRGSNM 423 (707)
Q Consensus 404 ~----~~i~~l~~L~~L~l~~~~l 423 (707)
| ..|++-..|.+|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 2 2344555566666655543
No 153
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.28 E-value=0.024 Score=57.77 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+++++.... ....++.+. ... +..++.+..+.... ... +.+-+||+||
T Consensus 52 ~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~-~~i~~~l~~~~~~~---------------~~~-~~~~vliiDe 108 (316)
T PHA02544 52 PGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRI-DFVRNRLTRFASTV---------------SLT-GGGKVIIIDE 108 (316)
T ss_pred CCCCHHHHHHHHHHHhCc-----cceEeccCc-ccH-HHHHHHHHHHHHhh---------------ccc-CCCeEEEEEC
Confidence 699999999999886521 123344443 221 11111111100000 011 2356899999
Q ss_pred CCCc---ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHh
Q 042869 82 IWGS---LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKK 140 (707)
Q Consensus 82 v~~~---~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~ 140 (707)
+... +..+.+...+.....+.++|+||...... .........+.++..+.++...++..
T Consensus 109 ~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 109 FDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred cccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 9754 11222332232334567888888764322 11111123567777777777666544
No 154
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.24 E-value=0.012 Score=51.74 Aligned_cols=82 Identities=24% Similarity=0.161 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.++....... ..++.+..+........... ...... ...............+.....+..+|++|+
T Consensus 11 ~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~viiiDe 86 (148)
T smart00382 11 PGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGG-KKASGSGELRLRLALALARKLKPDVLILDE 86 (148)
T ss_pred CCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhc-cCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 69999999999998765442 33555555443322222111 000111 111111222333444444443349999999
Q ss_pred CCCccc
Q 042869 82 IWGSLD 87 (707)
Q Consensus 82 v~~~~~ 87 (707)
+.....
T Consensus 87 i~~~~~ 92 (148)
T smart00382 87 ITSLLD 92 (148)
T ss_pred CcccCC
Confidence 987643
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.06 Score=57.83 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=61.8
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++... +..+.+...+-.....+++|++|.+..-. ..-......+++.+++.++..+.+.+.+......
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~- 195 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS- 195 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-
Confidence 4568999999755 33455544443334467777777664222 1111224588999999999988887766422211
Q ss_pred hhHHHHHHHHHHcCCcchHHHHH
Q 042869 150 ELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
-..+.+..|++.++|.+--+...
T Consensus 196 i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 196 YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHH
Confidence 12456788999999988544433
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.12 Score=53.28 Aligned_cols=172 Identities=15% Similarity=0.166 Sum_probs=89.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCc-EEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEK-VISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
.|.|||.|++++.+..... ..+. ++.+. .+++..+++..+.. ...++.++.. + -=++++|
T Consensus 122 ~GlGKTHLl~Aign~~~~~-~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-~--~dlllID 182 (408)
T COG0593 122 VGLGKTHLLQAIGNEALAN-GPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-S--LDLLLID 182 (408)
T ss_pred CCCCHHHHHHHHHHHHHhh-CCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh-c--cCeeeec
Confidence 4899999999999987654 2222 44332 34444444444333 1233444444 2 3489999
Q ss_pred CCCCccc---cc-ccccccCC-CCCCeEEEEeeCCcccc--------ccccCCcceEEeecCChHHHHHHHHhhhcC--C
Q 042869 81 DIWGSLD---LE-AIGIPFAD-NNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGD--C 145 (707)
Q Consensus 81 dv~~~~~---~~-~l~~~l~~-~~~gs~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~--~ 145 (707)
|++.... |+ ++...+.. ...|-.||+|++...-. ..+....-.+++.+.+.+....++.+.+.. .
T Consensus 183 Diq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~ 262 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGI 262 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCC
Confidence 9975422 22 22222111 12244888888763221 112233458999999999999999887642 2
Q ss_pred CCC-chhHHHHHHHHHHcCCcchHHHHHHHHhc--c--CChhHHHHHHHHHH
Q 042869 146 REN-GELKSVAAEIVKECAGLPIAIVPIAKALK--N--KSPYEWRNALRQLE 192 (707)
Q Consensus 146 ~~~-~~~~~~~~~i~~~c~g~Plai~~~~~~l~--~--~~~~~w~~~l~~l~ 192 (707)
..+ +...-++..+-+...-+.-|+..+..+-. + .+.+.-+++++.+.
T Consensus 263 ~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 263 EIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLL 314 (408)
T ss_pred CCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhh
Confidence 222 22223333333333333444433333322 2 15555666666544
No 157
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.19 E-value=0.0028 Score=59.43 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCCCccEEEecCC--Cccc-CCccccccCCCCEEEecCCCCCCc---ccccCCCCCcEEEcCCC
Q 042869 364 GMTELRVLDFTQM--YLLA-LPSSLGLLQNLQTLSLENCKLGDM---AIIGDLKKLEILTLRGS 421 (707)
Q Consensus 364 ~l~~L~~L~l~~~--~~~~-lp~~i~~l~~L~~L~l~~~~~~~~---~~i~~l~~L~~L~l~~~ 421 (707)
.+++|+.|.++.| .+.. ++....++++|++|++++|++..+ ..+..+.+|..|++..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 3445555555555 2222 333334445555555555554432 22333444444444444
No 158
>PRK06620 hypothetical protein; Validated
Probab=96.19 E-value=0.021 Score=54.05 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=50.2
Q ss_pred cEEEEEeCCCCcccccccccccC-CCCCCeEEEEeeCCcccc------ccccCCcceEEeecCChHHHHHHHHhhhcCCC
Q 042869 74 KILIILDDIWGSLDLEAIGIPFA-DNNSGCKVLLTARSQDVL------SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCR 146 (707)
Q Consensus 74 r~LlVlDdv~~~~~~~~l~~~l~-~~~~gs~iivTtr~~~v~------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~ 146 (707)
.-++++||+...++ ..+...+. -...|..||+|++..... ..+....-++++++++.++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~- 163 (214)
T PRK06620 86 YNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS- 163 (214)
T ss_pred CCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-
Confidence 35788899974322 11111110 013467899998864431 1112223478999999998888887766421
Q ss_pred CCchhHHHHHHHHHHcCCcc
Q 042869 147 ENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 147 ~~~~~~~~~~~i~~~c~g~P 166 (707)
.-.-.+++..-|++.+.|--
T Consensus 164 ~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 164 SVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred CCCCCHHHHHHHHHHccCCH
Confidence 11122455566666665543
No 159
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.18 E-value=0.028 Score=58.70 Aligned_cols=64 Identities=27% Similarity=0.210 Sum_probs=49.2
Q ss_pred CcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccc-----cccCCcceEEeecCChHHHHHH
Q 042869 73 PKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLS-----CKMDCQQNFFVDVLNEKEAWSL 137 (707)
Q Consensus 73 kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~~~~~~~~~~l~~L~~~~a~~L 137 (707)
++..|+||.|....+|......+.+.++. +|++|+-+..... ...+-...+++.||+..|-..+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 57899999999999999887777777666 8888888755541 1223356789999999987664
No 160
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.075 Score=58.77 Aligned_cols=166 Identities=11% Similarity=0.080 Sum_probs=87.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhh---hh-cchhhHHHHHHHHHHh----cCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLEL---AE-QSHETVRAGRLLERLK----KEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~~-~~~~~~~~~~~~~~l~----~~k 73 (707)
.|+||||+|+.++...-....... ....+...+..+.+......+. .. .....+.++++++... .++
T Consensus 47 ~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~ 121 (620)
T PRK14948 47 RGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQAR 121 (620)
T ss_pred CCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCC
Confidence 699999999999987543211110 0112222333333332221111 00 0112233444444332 134
Q ss_pred cEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCch
Q 042869 74 KILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGE 150 (707)
Q Consensus 74 r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 150 (707)
+-++|+|++... +.++.+...+-.-.....+|++|.+.. +...-......+++..++.++....+.+.+...... .
T Consensus 122 ~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-i 200 (620)
T PRK14948 122 WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-I 200 (620)
T ss_pred ceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-C
Confidence 568999999854 345556555433333455565565533 222111223567888999998888877766432111 1
Q ss_pred hHHHHHHHHHHcCCcchHHHHHH
Q 042869 151 LKSVAAEIVKECAGLPIAIVPIA 173 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Plai~~~~ 173 (707)
..+....|++.++|.+..+....
T Consensus 201 s~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 201 EPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 13457889999999876554443
No 161
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.09 E-value=0.038 Score=58.05 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=66.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... | +.+..+. +.. ..... ....+..+++....+.+.+|+||+
T Consensus 226 PGTGKT~LAraIA~el~~~--f---i~V~~se------L~~----k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDE 284 (438)
T PTZ00361 226 PGTGKTLLAKAVANETSAT--F---LRVVGSE------LIQ----KYLGD------GPKLVRELFRVAEENAPSIVFIDE 284 (438)
T ss_pred CCCCHHHHHHHHHHhhCCC--E---EEEecch------hhh----hhcch------HHHHHHHHHHHHHhCCCcEEeHHH
Confidence 6999999999999875432 3 1121111 111 10000 112233344443445678999999
Q ss_pred CCCccc----------------ccccccccCC--CCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSLD----------------LEAIGIPFAD--NNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~~----------------~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++.... ..++...+.. ...+-+||.||......... ......+++...+.++..++|.
T Consensus 285 ID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 285 IDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFE 364 (438)
T ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHH
Confidence 853210 0111111111 12356788888765544211 1234578999999999999999
Q ss_pred hhhcC
Q 042869 140 KMTGD 144 (707)
Q Consensus 140 ~~~~~ 144 (707)
.+...
T Consensus 365 ~~~~k 369 (438)
T PTZ00361 365 IHTSK 369 (438)
T ss_pred HHHhc
Confidence 77643
No 162
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.076 Score=60.48 Aligned_cols=97 Identities=7% Similarity=0.068 Sum_probs=60.2
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|||++... +..+.|.+.+-.-...+.+|++|.+. .+..........|++..++.++..+.+.+........
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 35567899999855 44556655554444566666666543 3332112234688999999999888887765322211
Q ss_pred chhHHHHHHHHHHcCCcchHH
Q 042869 149 GELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai 169 (707)
...+....|++.++|.+..+
T Consensus 199 -id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 199 -VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 12344678899999987433
No 163
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.08 E-value=0.015 Score=57.68 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=79.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhc-hhhhhcchhh--HHHHHHHHHHh-------c
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIG-LELAEQSHET--VRAGRLLERLK-------K 71 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~--~~~~~~~~~l~-------~ 71 (707)
.|+|||.+.+++.+.... ..+|+++-+.++...+...|+.+.+ .+......+. +........+. +
T Consensus 39 sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~ 113 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNR 113 (438)
T ss_pred CCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc
Confidence 599999999999987622 2579999999999999999999985 2221111111 12222222222 2
Q ss_pred CCcEEEEEeCCCCcccccccccc----cC--CCCCCeEEEEeeCCccccc--cccCCcc--eEEeecCChHHHHHHHHhh
Q 042869 72 EPKILIILDDIWGSLDLEAIGIP----FA--DNNSGCKVLLTARSQDVLS--CKMDCQQ--NFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~~~~~l~~~----l~--~~~~gs~iivTtr~~~v~~--~~~~~~~--~~~l~~L~~~~a~~Lf~~~ 141 (707)
++.++||||+++...+.+...-+ +. -..+ .-+|+++....-.. ..+++.. ++..+..+.+|-.+++.+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 46899999999877655543211 10 1112 23344443322111 1123333 4556788888888888663
No 164
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.075 Score=58.02 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ...+.+...+-.......+|++|.+ ..+...-..-...|++..++.++..+.+.+.+......
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 35568999998744 3455555455433445666665554 33322111224679999999999888887766422111
Q ss_pred chhHHHHHHHHHHcCCcch
Q 042869 149 GELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pl 167 (707)
-..+....|++..+|.+-
T Consensus 197 -i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 197 -VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred -CCHHHHHHHHHHcCCCHH
Confidence 123456778888998774
No 165
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0035 Score=58.87 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=64.4
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCccceeeeccc--cccccCchhhcCCCCccEEEecCCCcccC--CccccccCCCC
Q 042869 317 DTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYH--ASLRIPSNFFTGMTELRVLDFTQMYLLAL--PSSLGLLQNLQ 392 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--p~~i~~l~~L~ 392 (707)
.....+..+++.+..+.....+..+++|+.|.++.| ....-..-....+++|++|++++|++..+ -.....+++|.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 345567778888888888888889999999999977 33321122245679999999999988752 23356788899
Q ss_pred EEEecCCCCCC
Q 042869 393 TLSLENCKLGD 403 (707)
Q Consensus 393 ~L~l~~~~~~~ 403 (707)
.|++..|..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 99999998554
No 166
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.02 E-value=0.094 Score=54.65 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=74.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... | +.+.. ..+.... ++. .......+++......+.+|++|+
T Consensus 188 pGTGKT~LAkalA~~l~~~--f---i~i~~------s~l~~k~---~ge-------~~~~lr~lf~~A~~~~P~ILfIDE 246 (398)
T PTZ00454 188 PGTGKTMLAKAVAHHTTAT--F---IRVVG------SEFVQKY---LGE-------GPRMVRDVFRLARENAPSIIFIDE 246 (398)
T ss_pred CCCCHHHHHHHHHHhcCCC--E---EEEeh------HHHHHHh---cch-------hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6999999999999875432 2 12211 1111111 010 111233444444445689999999
Q ss_pred CCCcc------------c----ccccccccCC--CCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------D----LEAIGIPFAD--NNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... . +..+...+.. ...+-.||.||......... ......+++...+.++...+|.
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHH
Confidence 86320 0 1111112211 12356788888765544211 1234578899999999888888
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
.........++. + ..++++...|.-
T Consensus 327 ~~~~~~~l~~dv-d-~~~la~~t~g~s 351 (398)
T PTZ00454 327 TITSKMNLSEEV-D-LEDFVSRPEKIS 351 (398)
T ss_pred HHHhcCCCCccc-C-HHHHHHHcCCCC
Confidence 665432211111 1 345566666553
No 167
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.094 Score=58.00 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=60.1
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++=++|+|++... ..++.+...+-.-...+.+|++|.. ..+...-......+++.+++.++....+.+.+......
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~- 199 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT- 199 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-
Confidence 4568899998755 3455665555443445666665544 33332222334679999999999998888766432211
Q ss_pred hhHHHHHHHHHHcCCcchHH
Q 042869 150 ELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai 169 (707)
...+.+..|++.++|-.--+
T Consensus 200 i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 200 AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 12345788999999976543
No 168
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.087 Score=58.42 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ..+..+...+-.......+|++|.. ..+...-......+++.+++.++....+.+.+......
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45669999998744 3455555444332334555555544 33322112223589999999999988887765322111
Q ss_pred chhHHHHHHHHHHcCCcchHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
...+.+..+++.++|.+--+..
T Consensus 197 -id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 197 -YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 1134577899999887654333
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.11 Score=51.41 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||-||++|+++.... |+.+... ++.+..+ +.....+.++++.-+.+....|.+|.
T Consensus 194 PGTGKTLLAkAVA~~T~At-------FIrvvgS----ElVqKYi----------GEGaRlVRelF~lArekaPsIIFiDE 252 (406)
T COG1222 194 PGTGKTLLAKAVANQTDAT-------FIRVVGS----ELVQKYI----------GEGARLVRELFELAREKAPSIIFIDE 252 (406)
T ss_pred CCCcHHHHHHHHHhccCce-------EEEeccH----HHHHHHh----------ccchHHHHHHHHHHhhcCCeEEEEec
Confidence 7999999999999987655 3443322 2222111 11233455666655566799999999
Q ss_pred CCCc----------------ccccccccccCCCCC--CeEEEEeeCCccccc----cccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGS----------------LDLEAIGIPFADNNS--GCKVLLTARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~----------------~~~~~l~~~l~~~~~--gs~iivTtr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++.. ...-++...+..|.+ .-|||..|.-..++. ....-+..++++.-+.+--.++|.
T Consensus 253 IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 8632 012334445555543 568888888777662 122345678888666666677888
Q ss_pred hhhcCCC--CCchhHHHHHHHHHHcCCcc----hHHHHHHHHhc
Q 042869 140 KMTGDCR--ENGELKSVAAEIVKECAGLP----IAIVPIAKALK 177 (707)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~i~~~c~g~P----lai~~~~~~l~ 177 (707)
-|+..-. +.-+ ...+++.+.|.- .|+.+=|++++
T Consensus 333 IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 333 IHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred HHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHHH
Confidence 7775322 2223 345666666654 34555566665
No 170
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.11 Score=55.60 Aligned_cols=100 Identities=8% Similarity=0.059 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ...+.+...+........+|++|.+. .+..........+.+.+++.++....+.+.+.....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi- 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI- 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45679999998754 23444444443333345555555442 222111122347889999999988888776642211
Q ss_pred chhHHHHHHHHHHcCCcchHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
....+.+..+++.++|.+..+...
T Consensus 197 ~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 197 EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112345677888888876544443
No 171
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.12 Score=53.96 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=55.2
Q ss_pred CcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++.... .++.+...+........+|++|..+ .+..........+++.+++.++....+.+.+......
T Consensus 108 ~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~- 186 (367)
T PRK14970 108 KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK- 186 (367)
T ss_pred CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-
Confidence 45689999987542 3555543332223345566665443 2222112223578999999999888888766432211
Q ss_pred hhHHHHHHHHHHcCCcch
Q 042869 150 ELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Pl 167 (707)
-..+....+++.++|.+-
T Consensus 187 i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 FEDDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHHHHHHhCCCCHH
Confidence 123567778888888654
No 172
>PRK08118 topology modulation protein; Reviewed
Probab=95.82 E-value=0.0043 Score=56.24 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=22.7
Q ss_pred CCCCcHHHHHHHHHHHhhhc-cCCCcEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKEN-NLFEKVIS 28 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~-~~F~~~~w 28 (707)
.+|+||||+|+.+++..... .+||..+|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47999999999999986543 46787776
No 173
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.78 E-value=0.11 Score=55.19 Aligned_cols=95 Identities=8% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... +..+.+...+........+|++|.+. .+...-......+++.++++++....+.+.+......
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 35678999998744 23444444443333355666666443 2222112224578999999999888887765422111
Q ss_pred chhHHHHHHHHHHcCCcch
Q 042869 149 GELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pl 167 (707)
-..+.+..|++.++|.+-
T Consensus 200 -i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 -TSREALLPIARAAQGSLR 217 (451)
T ss_pred -CCHHHHHHHHHHcCCCHH
Confidence 123457889999998764
No 174
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.73 E-value=0.033 Score=52.99 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRV 31 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (707)
.|+||||++..+......+ |+.+++++-
T Consensus 22 sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 22 SGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred CCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 6999999999998876554 877777654
No 175
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.0022 Score=57.61 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=50.7
Q ss_pred ccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhh
Q 042869 589 RTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEV 662 (707)
Q Consensus 589 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 662 (707)
.+..+++++.|.+.+|..+.+|...... +-+|+|+.|+|++|+++++- ....+..+++|+.|.|.+.+.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhc
Confidence 3445777788888888888777543332 25788888888888888876 334566788888888887766543
No 176
>CHL00176 ftsH cell division protein; Validated
Probab=95.59 E-value=0.15 Score=56.44 Aligned_cols=141 Identities=16% Similarity=0.245 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|++++...... ++.++ ..++..... +. .......+++....+.+++|++||
T Consensus 225 pGTGKT~LAralA~e~~~p-------~i~is----~s~f~~~~~---g~-------~~~~vr~lF~~A~~~~P~ILfIDE 283 (638)
T CHL00176 225 PGTGKTLLAKAIAGEAEVP-------FFSIS----GSEFVEMFV---GV-------GAARVRDLFKKAKENSPCIVFIDE 283 (638)
T ss_pred CCCCHHHHHHHHHHHhCCC-------eeecc----HHHHHHHhh---hh-------hHHHHHHHHHHHhcCCCcEEEEec
Confidence 7999999999998865332 22222 111111100 00 112234445555555789999999
Q ss_pred CCCcc------------c----ccccccccCC--CCCCeEEEEeeCCcccccc----ccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------D----LEAIGIPFAD--NNSGCKVLLTARSQDVLSC----KMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~~----~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... . +..+...+.. ...+-.||.||...+.... ...-...+.+...+.++-.++++
T Consensus 284 ID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~ 363 (638)
T CHL00176 284 IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILK 363 (638)
T ss_pred chhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHH
Confidence 96321 1 1122212211 2234556666655443311 11234578888899999999998
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGL 165 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~ 165 (707)
.++......+ ......+++.+.|.
T Consensus 364 ~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 364 VHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred HHHhhcccch--hHHHHHHHhcCCCC
Confidence 8775422111 22356677777773
No 177
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.51 E-value=0.063 Score=52.19 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=48.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCC-CcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLF-EKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLE 67 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~ 67 (707)
+|+||||||+.+++....+ | +.++++-+.+.. .+.++.+++.+.-.. ....+... ....-.+.+
T Consensus 78 ~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AE 155 (274)
T cd01133 78 AGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAE 155 (274)
T ss_pred CCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 5999999999999988764 4 446666665544 466777776543110 01111100 112233455
Q ss_pred HHh-c-CCcEEEEEeCCCC
Q 042869 68 RLK-K-EPKILIILDDIWG 84 (707)
Q Consensus 68 ~l~-~-~kr~LlVlDdv~~ 84 (707)
++. + |+.+|+++||+..
T Consensus 156 yfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 156 YFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHhcCCeEEEEEeChhH
Confidence 554 3 7899999999853
No 178
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.39 E-value=0.044 Score=52.84 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=90.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEE-EEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHh-----cCCc-
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVI-SSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLK-----KEPK- 74 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-----~~kr- 74 (707)
+|+|||+-|.+++...-..+.|.+++ -.++|......-+-..+ . ...++..... ..++
T Consensus 66 pGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-k--------------~fakl~~~~~~~~~~~~~~f 130 (346)
T KOG0989|consen 66 PGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-K--------------NFAKLTVLLKRSDGYPCPPF 130 (346)
T ss_pred CCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-c--------------CHHHHhhccccccCCCCCcc
Confidence 79999999999988766566776644 34666554433111100 0 0011111010 0123
Q ss_pred EEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCccccccc-cCCcceEEeecCChHHHHHHHHhhhcCCCCCchh
Q 042869 75 ILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVLSCK-MDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGEL 151 (707)
Q Consensus 75 ~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~ 151 (707)
=.+|||+++.. +.|.++....-.....+|.|+.+......... ..--.-|..++|.+++...-+...+..+...- .
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d 209 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-D 209 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC-C
Confidence 37889999865 67998887776667777777766664433211 11123578899999999888888775332222 2
Q ss_pred HHHHHHHHHHcCCcch
Q 042869 152 KSVAAEIVKECAGLPI 167 (707)
Q Consensus 152 ~~~~~~i~~~c~g~Pl 167 (707)
.+..+.|++.++|---
T Consensus 210 ~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 210 DDALKLIAKISDGDLR 225 (346)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 4557889999988643
No 179
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.35 E-value=0.11 Score=56.50 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... ++.++ ..++..... +. .......+++......+.+|++|+
T Consensus 97 pGtGKT~la~alA~~~~~~-------~~~i~----~~~~~~~~~---g~-------~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 97 PGTGKTLLAKAVAGEAGVP-------FFSIS----GSDFVEMFV---GV-------GASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CCCCHHHHHHHHHHHcCCC-------eeecc----HHHHHHHHh---cc-------cHHHHHHHHHHHHhcCCCEEEEec
Confidence 7999999999998765332 22222 112211110 00 112233444444444578999999
Q ss_pred CCCcc------------ccc----ccccccC--CCCCCeEEEEeeCCccccc----cccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------DLE----AIGIPFA--DNNSGCKVLLTARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~~~----~l~~~l~--~~~~gs~iivTtr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... .+. .+...+. ....+-.||.||....... ....-...+.++..+.++-.++|.
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 96421 011 1111111 1122444555555443221 111234578888899988888888
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGL 165 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~ 165 (707)
..........+ .-...+++.+.|.
T Consensus 236 ~~l~~~~~~~~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 236 VHAKNKKLAPD--VDLKAVARRTPGF 259 (495)
T ss_pred HHHhcCCCCcc--hhHHHHHHhCCCC
Confidence 77643222111 1134777777774
No 180
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.25 Score=54.01 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=59.6
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ..++.+...+-.......+|.+|.+. .+...-......+++.+++.++..+.+.+.+.....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi- 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI- 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 35668999999755 34555655554333456666666542 222111122346889999999988888876642221
Q ss_pred chhHHHHHHHHHHcCCcchHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
.-..+.+..|++.++|.+-.+..
T Consensus 197 ~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 197 KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11245577788899997754433
No 181
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.21 E-value=0.36 Score=45.74 Aligned_cols=86 Identities=17% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHh-cCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLK-KEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~kr~LlVlD 80 (707)
.|+|||++++++.+....+. .+ -|.+.+. ....+..+.+.+. ...||+|++|
T Consensus 61 rGtGKSSlVkall~~y~~~G---LR-lIev~k~-----------------------~L~~l~~l~~~l~~~~~kFIlf~D 113 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEYADQG---LR-LIEVSKE-----------------------DLGDLPELLDLLRDRPYKFILFCD 113 (249)
T ss_pred CCCCHHHHHHHHHHHHhhcC---ce-EEEECHH-----------------------HhccHHHHHHHHhcCCCCEEEEec
Confidence 69999999999999877652 11 1222211 1111223333333 2468999999
Q ss_pred CCCCc---ccccccccccC---CCCCCeEEEEeeCC-cccc
Q 042869 81 DIWGS---LDLEAIGIPFA---DNNSGCKVLLTARS-QDVL 114 (707)
Q Consensus 81 dv~~~---~~~~~l~~~l~---~~~~gs~iivTtr~-~~v~ 114 (707)
|..-. .....++..+. ...+...+|..|.+ ++..
T Consensus 114 DLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 114 DLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 99633 34555554442 22334445555555 5544
No 182
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.0091 Score=33.05 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=13.7
Q ss_pred CccEEEecCCCcccCCccccc
Q 042869 367 ELRVLDFTQMYLLALPSSLGL 387 (707)
Q Consensus 367 ~L~~L~l~~~~~~~lp~~i~~ 387 (707)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777776666666544
No 183
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.004 Score=56.01 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=52.9
Q ss_pred ccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcccc
Q 042869 618 ESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQL 697 (707)
Q Consensus 618 ~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L 697 (707)
..++.++.|.+.+|..+.+-.-....+-.++|++|+|++|+++++-.- ..+..+++|+.|.|.++|..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhh
Confidence 456788889999998887753323334579999999999999976532 13457899999999999866
Q ss_pred cc
Q 042869 698 TS 699 (707)
Q Consensus 698 ~~ 699 (707)
.+
T Consensus 190 ~~ 191 (221)
T KOG3864|consen 190 AN 191 (221)
T ss_pred hc
Confidence 54
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.22 Score=50.09 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCCh
Q 042869 59 TVRAGRLLERLK----KEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNE 131 (707)
Q Consensus 59 ~~~~~~~~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~ 131 (707)
.+.++++.+.+. .+++=.+|+|+++.- ...+.+.+.+-.-..++.+|++|.+.+ +...-..--..+.+.+++.
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~ 168 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEE 168 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCH
Confidence 344455555443 245668889999854 345555555533345667777777754 3321112235788999999
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHH
Q 042869 132 KEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 132 ~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 169 (707)
++..+.+.+.... . ...+...+..++|.|..+
T Consensus 169 ~~~~~~L~~~~~~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 169 QQALDWLQAQSSA--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHHHhcc--C----hHHHHHHHHHcCCCHHHH
Confidence 9999888875421 1 112556788899999644
No 185
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.06 E-value=0.0099 Score=64.83 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=64.4
Q ss_pred hHHHHhcccceEeecCC-CCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCccc
Q 042869 558 GHIMQLKGIEDLTLDGL-PDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKK 636 (707)
Q Consensus 558 ~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 636 (707)
.....+++|+.|++.++ ......+..... ....+++|+.|+++.|..+.+..-. .-...+++|++|.+.+|..+++
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~l~-~l~~~c~~L~~L~l~~c~~lt~ 284 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIGLS-ALASRCPNLETLSLSNCSNLTD 284 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchhHH-HHHhhCCCcceEccCCCCccch
Confidence 44556788888888763 222222211000 2334678888888887655543111 1122368899999888988776
Q ss_pred ccchhhhccCCCCcEEEEccCcchhh
Q 042869 637 VFPLVIGRGLQQLQSVKVSSCQNMEV 662 (707)
Q Consensus 637 l~~~~~~~~l~~L~~L~i~~C~~l~~ 662 (707)
..-....+.+++|++|+|++|..+.+
T Consensus 285 ~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 285 EGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred hHHHHHHHhcCcccEEeeecCccchH
Confidence 65555667788899999999988743
No 186
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.02 E-value=0.51 Score=44.70 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=90.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHHHHHHHHHHhchhhhhcch--hhHHHHHHHHHHhcCCc-EEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGLELAEQSH--ETVRAGRLLERLKKEPK-ILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~l~~~kr-~Ll 77 (707)
-|+|||+++|++...... +.++-+.+.+ ..+...+...++..+..+....-. .......+.+-..+++| ..+
T Consensus 60 vGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l 135 (269)
T COG3267 60 VGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVL 135 (269)
T ss_pred CCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 389999999955443221 1222233433 346777888888887763222111 11222334444556777 999
Q ss_pred EEeCCCCc--cccccccc--ccC-CCCCCeEEEEeeCC--------ccccccccCCcceEEeecCChHHHHHHHHhhhcC
Q 042869 78 ILDDIWGS--LDLEAIGI--PFA-DNNSGCKVLLTARS--------QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGD 144 (707)
Q Consensus 78 VlDdv~~~--~~~~~l~~--~l~-~~~~gs~iivTtr~--------~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 144 (707)
++|+.... +..+.++. .+. ....--+|+..-.- ...........-.|++.+++.++...++..+..+
T Consensus 136 ~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 136 MVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred eehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhc
Confidence 99998644 22332211 110 11111123332211 0000101111223899999999888877766642
Q ss_pred CCC--CchhHHHHHHHHHHcCCcchHHHHHHHH
Q 042869 145 CRE--NGELKSVAAEIVKECAGLPIAIVPIAKA 175 (707)
Q Consensus 145 ~~~--~~~~~~~~~~i~~~c~g~Plai~~~~~~ 175 (707)
... +--..+....|.....|.|.+|..++..
T Consensus 216 a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 216 AGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred cCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 222 2222466778888999999999887643
No 187
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.00 E-value=0.11 Score=55.55 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.+|+++.+..... | +-++.+. +.....+ .....+.++++......+++|++|+
T Consensus 268 pGTGKTllAkaiA~e~~~~--~---~~l~~~~----------l~~~~vG------ese~~l~~~f~~A~~~~P~IL~IDE 326 (489)
T CHL00195 268 QGTGKSLTAKAIANDWQLP--L---LRLDVGK----------LFGGIVG------ESESRMRQMIRIAEALSPCILWIDE 326 (489)
T ss_pred CCCcHHHHHHHHHHHhCCC--E---EEEEhHH----------hcccccC------hHHHHHHHHHHHHHhcCCcEEEehh
Confidence 7999999999999875432 1 1122111 1111000 0122334444444444689999999
Q ss_pred CCCcc----cc----------cccccccCCCCCCeEEEEeeCCccccc----cccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGSL----DL----------EAIGIPFADNNSGCKVLLTARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~~----~~----------~~l~~~l~~~~~gs~iivTtr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++..- .. ..+...+.....+--||.||.+..... ....-+..+.++.-+.++-.++|..+..
T Consensus 327 ID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 327 IDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred hhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 97421 00 001111111222334555665544321 1112345788888899999999987775
Q ss_pred CCCCCchhHHHHHHHHHHcCCcc
Q 042869 144 DCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
...+......-...+++...|.-
T Consensus 407 ~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 407 KFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred hcCCCcccccCHHHHHhhcCCCC
Confidence 32211100111445666666553
No 188
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.93 E-value=0.06 Score=49.84 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
.+|+|||+|+++++.....+
T Consensus 32 ~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999988776
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.81 Score=46.03 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=66.3
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+.+=.+|+|+++.. ...+.+.+.+-.-..++.+|++|.+. .+...-..--..+.+.+++.+++.+.+.+.. ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~~- 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---IT- 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---Cc-
Confidence 34568889999754 44555655553334466677766664 3433222223578899999999998886531 11
Q ss_pred chhHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLE 192 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~ 192 (707)
....++..++|.|+.+..+ +.+...+.++..+..+.
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQLV 218 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHHH
Confidence 1356789999999876554 33333444455555544
No 190
>PRK08181 transposase; Validated
Probab=94.83 E-value=0.031 Score=54.62 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.||.++.+....+ ...+++++ ..++...+.... ... ...+..+.+. +-=|||+||
T Consensus 115 ~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~----~~~-----~~~~~l~~l~--~~dLLIIDD 175 (269)
T PRK08181 115 PGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVAR----REL-----QLESAIAKLD--KFDLLILDD 175 (269)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHH----hCC-----cHHHHHHHHh--cCCEEEEec
Confidence 6999999999999866433 23345554 344555553321 111 1223344443 346999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 176 lg~~ 179 (269)
T PRK08181 176 LAYV 179 (269)
T ss_pred cccc
Confidence 9644
No 191
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.18 Score=55.54 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=54.3
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++... ...+.+...+-.......+|++|.+ ..+...-......+++..++.++....+...+......
T Consensus 119 ~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~- 197 (576)
T PRK14965 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS- 197 (576)
T ss_pred CceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-
Confidence 4558899999754 3344554444333345666666654 33322112223578889999998887777655322111
Q ss_pred hhHHHHHHHHHHcCCcc
Q 042869 150 ELKSVAAEIVKECAGLP 166 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~P 166 (707)
-..+....|++.++|..
T Consensus 198 i~~~al~~la~~a~G~l 214 (576)
T PRK14965 198 ISDAALALVARKGDGSM 214 (576)
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 12345677888888865
No 192
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.80 E-value=0.4 Score=48.35 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=63.6
Q ss_pred HHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCC-ccccccccCCcceEEeecCChH
Q 042869 60 VRAGRLLERLK----KEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEK 132 (707)
Q Consensus 60 ~~~~~~~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~ 132 (707)
+.++.+.+.+. .+.+-++|+|+++.. ...+.+...+-.-.+. .+|++|.+ ..+...-..-...+.+.+++.+
T Consensus 107 d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~-~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~ 185 (314)
T PRK07399 107 EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLILIAPSPESLLPTIVSRCQIIPFYRLSDE 185 (314)
T ss_pred HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCC-eEEEEECChHhCcHHHHhhceEEecCCCCHH
Confidence 34445555543 245678999998754 3444454444221233 45555554 3333322233468899999999
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHH
Q 042869 133 EAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 133 ~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
+..+.+.+....... ......++..++|.|..+...
T Consensus 186 ~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 186 QLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 999999886432111 111367899999999765543
No 193
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.80 E-value=0.01 Score=32.86 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=11.9
Q ss_pred CCcEEEcCCCchhhchHHhh
Q 042869 412 KLEILTLRGSNMQKLVEEIG 431 (707)
Q Consensus 412 ~L~~L~l~~~~l~~lp~~i~ 431 (707)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665543
No 194
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.63 E-value=0.38 Score=52.85 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=56.2
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|++... ..+..+...+-.-.....+|++|... .+...-......+++.+++.++....+...+......
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678899999754 34555554443223344555555443 2322111223567888999999888887766422211
Q ss_pred chhHHHHHHHHHHcCCcchHH
Q 042869 149 GELKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai 169 (707)
. ..+....|++.++|.+..+
T Consensus 198 i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 198 Y-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred C-CHHHHHHHHHHcCCCHHHH
Confidence 1 1345677888888877543
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.44 Score=47.90 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++=++|+|+++.. ..-+.+.+.+-.-..++.+|++|.+.+ +...-..--..+.+.+++.+++.+.+.+.. .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-
Confidence 45679999999854 334444444433334666777776643 332111223567888999999988886531 11
Q ss_pred chhHHHHHHHHHHcCCcchHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
...+..++..++|.|+.+..+
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 222667899999999866544
No 196
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.57 E-value=0.15 Score=48.26 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQG 42 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 42 (707)
+|+|||++|.++....... -..++|++... ++...+.+
T Consensus 21 ~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 21 PGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 7999999999888765433 46788998875 66655544
No 197
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.36 E-value=0.26 Score=43.69 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc-----ccccccccccCCCCCCeEEEEeeCCcc
Q 042869 64 RLLERLKKEPKILIILDDIWGS-----LDLEAIGIPFADNNSGCKVLLTARSQD 112 (707)
Q Consensus 64 ~~~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 112 (707)
...+.+..++-=|+|||++-.. .+.+.+...+.....+.-||+|.|+..
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3444555555569999998644 233333333333344678999999944
No 198
>PTZ00202 tuzin; Provisional
Probab=94.33 E-value=0.16 Score=52.13 Aligned_cols=130 Identities=13% Similarity=0.193 Sum_probs=71.9
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHh----c-CCcE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLK----K-EPKI 75 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~----~-~kr~ 75 (707)
++|+|||||++.+..... + ....++ ..+..++++.++.+++.+.... ..+....+.+.+. . |++.
T Consensus 294 ~~G~GKTTLlR~~~~~l~----~-~qL~vN---prg~eElLr~LL~ALGV~p~~~--k~dLLrqIqeaLl~~~~e~GrtP 363 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG----M-PAVFVD---VRGTEDTLRSVVKALGVPNVEA--CGDLLDFISEACRRAKKMNGETP 363 (550)
T ss_pred CCCCCHHHHHHHHHhcCC----c-eEEEEC---CCCHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHHHHhCCCCE
Confidence 479999999999986543 1 122333 2277999999999999743322 2233334333332 2 6777
Q ss_pred EEEEeCCCCccccccc---ccccCCCCCCeEEEEeeCCcccc--ccccCCcceEEeecCChHHHHHHHHhh
Q 042869 76 LIILDDIWGSLDLEAI---GIPFADNNSGCKVLLTARSQDVL--SCKMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 76 LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iivTtr~~~v~--~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
+||+-=-+- +.+..+ ...+.+...-+.|++----+... .....--..|-++.++.++|.+.-.+.
T Consensus 364 VLII~lreg-~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 364 LLVLKLREG-SSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred EEEEEecCC-CcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 777653221 111111 01222333445566544333321 111222357889999999998876553
No 199
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.78 Score=50.87 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||-||++++-.-.+- |+.+|.. ++ ++.+... ....++.+...-+....++|.+|+
T Consensus 353 PGTGKTLLAKAiAGEAgVP-------F~svSGS----EF----vE~~~g~------~asrvr~lf~~ar~~aP~iifide 411 (774)
T KOG0731|consen 353 PGTGKTLLAKAIAGEAGVP-------FFSVSGS----EF----VEMFVGV------GASRVRDLFPLARKNAPSIIFIDE 411 (774)
T ss_pred CCCcHHHHHHHHhcccCCc-------eeeechH----HH----HHHhccc------chHHHHHHHHHhhccCCeEEEecc
Confidence 7999999999999876554 3444432 22 2222111 122345555555556789999999
Q ss_pred CCCcc-----------------cccccccccCCCCCCe-EEEEe-eCCccccc----cccCCcceEEeecCChHHHHHHH
Q 042869 82 IWGSL-----------------DLEAIGIPFADNNSGC-KVLLT-ARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLF 138 (707)
Q Consensus 82 v~~~~-----------------~~~~l~~~l~~~~~gs-~iivT-tr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf 138 (707)
++... .++++......+..++ .|++. |+...+.+ ....-+..+.++.-+.....++|
T Consensus 412 ida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 412 IDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred cccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence 86431 1333433333333333 44444 44445542 11223457788888888999999
Q ss_pred HhhhcCCCCCchhHHHHHHHHHHcCCcchH
Q 042869 139 KKMTGDCRENGELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 168 (707)
.-++.......+..+++. |+..-.|.+=|
T Consensus 492 ~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 492 KVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred HHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 998865444455666666 88888888754
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.18 E-value=0.042 Score=50.27 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||.||.++.+....+ .+. +.|++ ..+++..+-. .... . ......+.+.+ -=||||||
T Consensus 56 ~G~GKThLa~ai~~~~~~~-g~~-v~f~~------~~~L~~~l~~----~~~~-~----~~~~~~~~l~~--~dlLilDD 116 (178)
T PF01695_consen 56 PGTGKTHLAVAIANEAIRK-GYS-VLFIT------ASDLLDELKQ----SRSD-G----SYEELLKRLKR--VDLLILDD 116 (178)
T ss_dssp TTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHC----CHCC-T----THCHHHHHHHT--SSCEEEET
T ss_pred HhHHHHHHHHHHHHHhccC-Ccc-eeEee------cCceeccccc----cccc-c----chhhhcCcccc--ccEecccc
Confidence 6999999999999876542 232 45554 3444444422 1111 1 11234455543 45888999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 117 lG~~ 120 (178)
T PF01695_consen 117 LGYE 120 (178)
T ss_dssp CTSS
T ss_pred ccee
Confidence 9754
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.15 E-value=0.066 Score=53.63 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||.||.++++....+ .+. +.++++ .+++.++....... ......+.+. +-=||||||
T Consensus 165 ~G~GKThLa~Aia~~l~~~-g~~-v~~~~~------~~l~~~lk~~~~~~---------~~~~~l~~l~--~~dlLiIDD 225 (306)
T PRK08939 165 FGVGKSYLLAAIANELAKK-GVS-STLLHF------PEFIRELKNSISDG---------SVKEKIDAVK--EAPVLMLDD 225 (306)
T ss_pred CCCCHHHHHHHHHHHHHHc-CCC-EEEEEH------HHHHHHHHHHHhcC---------cHHHHHHHhc--CCCEEEEec
Confidence 5999999999999987643 233 445543 35555554443211 1223344443 456999999
Q ss_pred CCCc--ccccc--cccccCCC--CCCeEEEEeeCC
Q 042869 82 IWGS--LDLEA--IGIPFADN--NSGCKVLLTARS 110 (707)
Q Consensus 82 v~~~--~~~~~--l~~~l~~~--~~gs~iivTtr~ 110 (707)
+... .+|.. +...+... ..+-.+|+||.-
T Consensus 226 iG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 226 IGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 9744 45653 33332111 234456666664
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.12 E-value=0.35 Score=55.46 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... | +.++. .+ ++...- +.....+..+++.-.......|++|+
T Consensus 496 pGtGKT~lakalA~e~~~~--f-----i~v~~----~~----l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 496 PGTGKTLLAKAVATESGAN--F-----IAVRG----PE----ILSKWV------GESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CCCCHHHHHHHHHHhcCCC--E-----EEEeh----HH----Hhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6999999999999875422 2 22221 11 111110 11122344555555555679999999
Q ss_pred CCCcc--------c------ccccccccCC--CCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHHhh
Q 042869 82 IWGSL--------D------LEAIGIPFAD--NNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 82 v~~~~--------~------~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
++... . ..++...+.. ...+-.||.||......... ......+.++..+.++-.++|..+
T Consensus 555 id~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 555 IDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred hhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHH
Confidence 86320 0 1112222221 12234455566554433211 123467889999999999999766
Q ss_pred hcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 142 TGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
..+....++. + ...+++.+.|.-
T Consensus 635 ~~~~~~~~~~-~-l~~la~~t~g~s 657 (733)
T TIGR01243 635 TRSMPLAEDV-D-LEELAEMTEGYT 657 (733)
T ss_pred hcCCCCCccC-C-HHHHHHHcCCCC
Confidence 5432221111 1 355667777654
No 203
>PRK12377 putative replication protein; Provisional
Probab=94.02 E-value=0.13 Score=49.77 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||+||.++.+....+ ...++++++ .+++..+-...... . ....+.+.+. +-=|||+||
T Consensus 110 ~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~----~----~~~~~l~~l~--~~dLLiIDD 171 (248)
T PRK12377 110 PGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG----Q----SGEKFLQELC--KVDLLVLDE 171 (248)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc----c----hHHHHHHHhc--CCCEEEEcC
Confidence 5999999999999987643 333556553 34544443332111 0 1123444443 467999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 172 lg~~ 175 (248)
T PRK12377 172 IGIQ 175 (248)
T ss_pred CCCC
Confidence 9543
No 204
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.02 E-value=0.29 Score=47.38 Aligned_cols=82 Identities=24% Similarity=0.230 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHHhhhccC----CCcEEEEEecCCcCHHHHHHHHHHHhchhhhh-----------c-chhhHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNL----FEKVISSRVSQTPQIKNIQGEIAEKIGLELAE-----------Q-SHETVRAGRL 65 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----------~-~~~~~~~~~~ 65 (707)
+|+||||+|.+++-....... -..++|++....++...+.+ +++..+..... . .........+
T Consensus 28 ~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~l 106 (235)
T cd01123 28 FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSDHQLQLLEEL 106 (235)
T ss_pred CCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHHHHHHHHHHH
Confidence 699999999988754322211 35789999888777654433 33333221110 0 0011223344
Q ss_pred HHHHhcC-CcEEEEEeCCCC
Q 042869 66 LERLKKE-PKILIILDDIWG 84 (707)
Q Consensus 66 ~~~l~~~-kr~LlVlDdv~~ 84 (707)
.+.+.+. +--+||+|.+..
T Consensus 107 ~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 107 EAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHhhcCCeeEEEEeCcHH
Confidence 4444444 667889998853
No 205
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.97 E-value=0.22 Score=42.79 Aligned_cols=55 Identities=18% Similarity=0.397 Sum_probs=19.2
Q ss_pred CCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEec
Q 042869 341 CPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLE 397 (707)
Q Consensus 341 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 397 (707)
+.+|+.+.+.. ....+....|.++++|+.+.+..+ +..++ ..+..+.+|+.+.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 34444444442 233444444555555555555443 33322 223344444444443
No 206
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.88 E-value=0.19 Score=46.16 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=20.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISS 29 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (707)
+.|+||||+|+.++...... +...+++
T Consensus 15 ~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 47999999999999887653 5555555
No 207
>PRK10536 hypothetical protein; Provisional
Probab=93.87 E-value=0.26 Score=47.30 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccc
Q 042869 74 KILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDV 113 (707)
Q Consensus 74 r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 113 (707)
.-+||+|++.+... ..+...+-..+.+|++|+|--..++
T Consensus 177 ~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 177 NAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred CCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCChhhc
Confidence 35999999987643 2233233345679999988776554
No 208
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.45 Score=50.66 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=84.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHh-----chhhhhcchhhHHHHHHHHHHh----cC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKI-----GLELAEQSHETVRAGRLLERLK----KE 72 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~~~~~~~l~----~~ 72 (707)
.|+||||+|+-++.-.--.+. ....+++.....+.|-..- ..+.-.. ...+.++.+++... .+
T Consensus 47 RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn-~gVddiR~i~e~v~y~P~~~ 118 (515)
T COG2812 47 RGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSLIDVIEIDAASN-TGVDDIREIIEKVNYAPSEG 118 (515)
T ss_pred CCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCcccchhhhhhhc-cChHHHHHHHHHhccCCccc
Confidence 599999999988864321110 1122333333333333220 1111111 13455666666654 24
Q ss_pred CcEEEEEeCCCC--cccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWG--SLDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
|-=..|+|.|.- ...|+++..-+-.--..-..|..|++.+ +...-..--..|.++.++.++-...+...+....-..
T Consensus 119 ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~ 198 (515)
T COG2812 119 RYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI 198 (515)
T ss_pred cceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc
Confidence 444788999963 3567777666533334556666666644 3322223345788999999988888877765322221
Q ss_pred hhHHHHHHHHHHcCCcc
Q 042869 150 ELKSVAAEIVKECAGLP 166 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~P 166 (707)
..+....|++...|..
T Consensus 199 -e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 199 -EEDALSLIARAAEGSL 214 (515)
T ss_pred -CHHHHHHHHHHcCCCh
Confidence 1334555666666644
No 209
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.82 E-value=0.21 Score=42.96 Aligned_cols=106 Identities=20% Similarity=0.331 Sum_probs=61.1
Q ss_pred cCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchhhchH-Hhhc
Q 042869 357 IPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLVE-EIGR 432 (707)
Q Consensus 357 ~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~ 432 (707)
++...|.++++|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +.. ...+.++.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4567788899999999985 455654 45777878999998875 555 34567777889998865 4555543 3455
Q ss_pred CcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccC
Q 042869 433 LTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGE 468 (707)
Q Consensus 433 l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 468 (707)
+++|+.+.+.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 88888888865 2556666657776 788777654
No 210
>PHA00729 NTP-binding motif containing protein
Probab=93.72 E-value=0.2 Score=47.21 Aligned_cols=22 Identities=0% Similarity=-0.037 Sum_probs=17.2
Q ss_pred cceEEeecCChHHHHHHHHhhh
Q 042869 121 QQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 121 ~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
...+.+.++++++....++.+.
T Consensus 119 ~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 119 VSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred CcEEEEecCCHHHHHHHHHhCC
Confidence 3457888889999888888754
No 211
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.70 E-value=0.47 Score=46.35 Aligned_cols=47 Identities=32% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhc
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIG 49 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 49 (707)
+|+|||+||-+++-...... .=..++|++-...|+...+. +|++..+
T Consensus 47 ~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 47 SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred cccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 69999999987765432211 12359999999999887775 4666543
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.69 E-value=0.2 Score=48.21 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||+||.++++....+ -..+++++ ..++...+-...... . .....+.+.+. +.=+||+||
T Consensus 108 ~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~~---~----~~~~~~l~~l~--~~dlLvIDD 170 (244)
T PRK07952 108 PGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSNS---E----TSEEQLLNDLS--NVDLLVIDE 170 (244)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhhc---c----ccHHHHHHHhc--cCCEEEEeC
Confidence 6999999999999986543 23345553 344544443332110 0 11223444454 345889999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 171 ig~~ 174 (244)
T PRK07952 171 IGVQ 174 (244)
T ss_pred CCCC
Confidence 9654
No 213
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.65 E-value=0.037 Score=28.34 Aligned_cols=17 Identities=47% Similarity=0.538 Sum_probs=7.1
Q ss_pred cccceeeccCcccccccc
Q 042869 684 TQLRTLELRSLAQLTSFC 701 (707)
Q Consensus 684 ~~L~~L~l~~cp~L~~i~ 701 (707)
|+|++|+|++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 345555555555 55543
No 214
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.61 E-value=0.57 Score=54.20 Aligned_cols=148 Identities=12% Similarity=0.146 Sum_probs=74.7
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEE-EEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHh-cCCcE
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVIS-SRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLK-KEPKI 75 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~kr~ 75 (707)
+|+||||+|+.++....... ..+..+| +.++. + .......+.-...+..+++... .+++.
T Consensus 217 pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l--------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ 282 (852)
T TIGR03345 217 AGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L--------QAGASVKGEFENRLKSVIDEVKASPQPI 282 (852)
T ss_pred CCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h--------hcccccchHHHHHHHHHHHHHHhcCCCe
Confidence 79999999999998764321 1233333 22221 0 0000011112223344444443 24689
Q ss_pred EEEEeCCCCcc-------ccc--ccccccCCCCCC-eEEEEeeCCccccc------cccCCcceEEeecCChHHHHHHHH
Q 042869 76 LIILDDIWGSL-------DLE--AIGIPFADNNSG-CKVLLTARSQDVLS------CKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 76 LlVlDdv~~~~-------~~~--~l~~~l~~~~~g-s~iivTtr~~~v~~------~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
+|++|++.... +-+ .+..+. -..| -++|-||+..+... ....-...+.+++++.+++.+++.
T Consensus 283 ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 283 ILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLR 360 (852)
T ss_pred EEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHH
Confidence 99999986431 111 122222 2234 45565666533210 011223589999999999999976
Q ss_pred hhhc---CCCCCchhHHHHHHHHHHcCCc
Q 042869 140 KMTG---DCRENGELKSVAAEIVKECAGL 165 (707)
Q Consensus 140 ~~~~---~~~~~~~~~~~~~~i~~~c~g~ 165 (707)
.... ....-.-..+....+++.+.+.
T Consensus 361 ~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 361 GLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 4442 1111111234456666666543
No 215
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.41 Score=51.78 Aligned_cols=63 Identities=29% Similarity=0.301 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC--cCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT--PQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVl 79 (707)
.|+|||+||+++++... +.....+..++++.- ..++.+++.+-. .+.+.+.- ..-+|||
T Consensus 440 ~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~~-~PSiIvL 500 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALWY-APSIIVL 500 (952)
T ss_pred CCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHhh-CCcEEEE
Confidence 59999999999999887 444555666766542 233333333221 12222222 4789999
Q ss_pred eCCC
Q 042869 80 DDIW 83 (707)
Q Consensus 80 Ddv~ 83 (707)
||++
T Consensus 501 Ddld 504 (952)
T KOG0735|consen 501 DDLD 504 (952)
T ss_pred cchh
Confidence 9985
No 216
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.60 E-value=0.31 Score=49.04 Aligned_cols=82 Identities=23% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHhhhc----cCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcc---------hh---hHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKEN----NLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQS---------HE---TVRAGRL 65 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~---------~~---~~~~~~~ 65 (707)
+|+|||+||.+++-..... ..=..++|++....|+++.+.+ ++++++.+....- .. .+.+..+
T Consensus 105 ~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l 183 (313)
T TIGR02238 105 FRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSEHQMELLDYL 183 (313)
T ss_pred CCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHH
Confidence 6999999998766432211 1124689999998888887754 5666654422110 01 1122333
Q ss_pred HHHHhcCCcEEEEEeCCCC
Q 042869 66 LERLKKEPKILIILDDIWG 84 (707)
Q Consensus 66 ~~~l~~~kr~LlVlDdv~~ 84 (707)
...+..++--|||+|.+..
T Consensus 184 ~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 184 AAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHhhccCCCEEEEEcchH
Confidence 3334444455788998753
No 217
>PRK09183 transposase/IS protein; Provisional
Probab=93.54 E-value=0.11 Score=50.79 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||+||.++.+...
T Consensus 111 ~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 111 SGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999987644
No 218
>PRK06526 transposase; Provisional
Probab=93.44 E-value=0.042 Score=53.40 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||+||.++.+....+ .+. +.|+ +..++..++.... . .. ........+. +.-+||+||
T Consensus 107 ~GtGKThLa~al~~~a~~~-g~~-v~f~------t~~~l~~~l~~~~----~-~~----~~~~~l~~l~--~~dlLIIDD 167 (254)
T PRK06526 107 PGTGKTHLAIGLGIRACQA-GHR-VLFA------TAAQWVARLAAAH----H-AG----RLQAELVKLG--RYPLLIVDE 167 (254)
T ss_pred CCCchHHHHHHHHHHHHHC-CCc-hhhh------hHHHHHHHHHHHH----h-cC----cHHHHHHHhc--cCCEEEEcc
Confidence 6999999999998866443 232 2332 3344444443221 1 01 1112223332 346999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 168 ~g~~ 171 (254)
T PRK06526 168 VGYI 171 (254)
T ss_pred cccC
Confidence 9754
No 219
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.37 E-value=0.2 Score=46.69 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCC--------CcEEEEEecCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLF--------EKVISSRVSQT 34 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 34 (707)
+|+||||++..+.........| ..+.|++....
T Consensus 41 ~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 41 PGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp STSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 7999999999888876543223 25778776655
No 220
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.36 E-value=0.71 Score=47.09 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=43.9
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhh
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
.+=.+|+|+++.. +..+.+...+-.-..++.+|++|++.. +...-..-...+++.+++.++..+.+.+.
T Consensus 110 ~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 110 NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4557999998754 334455555543345677777777644 22212233457899999999998888653
No 221
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.26 E-value=0.44 Score=54.47 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 77 (707)
+|+|||++|+.++....... ..+..+|.- ++..+.. . ....+.....+..+++.+...++.+|
T Consensus 212 pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a----~----~~~~g~~e~~l~~i~~~~~~~~~~IL 278 (731)
T TIGR02639 212 PGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLA----G----TKYRGDFEERLKAVVSEIEKEPNAIL 278 (731)
T ss_pred CCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhh----h----ccccchHHHHHHHHHHHHhccCCeEE
Confidence 79999999999998764321 113444421 1211111 0 01111123344555555544457999
Q ss_pred EEeCCCCcc----------cccccccccCCCCCCe-EEEEeeCCcccc------ccccCCcceEEeecCChHHHHHHHHh
Q 042869 78 ILDDIWGSL----------DLEAIGIPFADNNSGC-KVLLTARSQDVL------SCKMDCQQNFFVDVLNEKEAWSLFKK 140 (707)
Q Consensus 78 VlDdv~~~~----------~~~~l~~~l~~~~~gs-~iivTtr~~~v~------~~~~~~~~~~~l~~L~~~~a~~Lf~~ 140 (707)
++|++.... +...+..+. -..|. ++|-+|...+.. .....-...++++.++.++..+++.+
T Consensus 279 fiDEih~l~~~g~~~~~~~~~~~~L~~~--l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~ 356 (731)
T TIGR02639 279 FIDEIHTIVGAGATSGGSMDASNLLKPA--LSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKG 356 (731)
T ss_pred EEecHHHHhccCCCCCccHHHHHHHHHH--HhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHH
Confidence 999986321 111122121 12333 455555542221 00011234789999999999999986
Q ss_pred hh
Q 042869 141 MT 142 (707)
Q Consensus 141 ~~ 142 (707)
..
T Consensus 357 ~~ 358 (731)
T TIGR02639 357 LK 358 (731)
T ss_pred HH
Confidence 54
No 222
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.25 E-value=0.96 Score=46.01 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCCh
Q 042869 59 TVRAGRLLERLK----KEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNE 131 (707)
Q Consensus 59 ~~~~~~~~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~ 131 (707)
.+.++.+.+.+. .+++=.+|+|+++.. +.++.+.+.+-.-..++.+|++|.+.+ +...-..--..+.+.+++.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 345555555543 234568889999854 456666655544445666666666644 3322122235788999999
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHH
Q 042869 132 KEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 132 ~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
++..+.+.+.. .+ . ...++..++|.|..+..+
T Consensus 194 ~~~~~~L~~~~---~~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 194 EAAAAWLAAQG---VA--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHHcC---CC--h----HHHHHHHcCCCHHHHHHH
Confidence 99998887641 11 1 223577889999765544
No 223
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.19 E-value=0.21 Score=50.73 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHh----cCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCCh
Q 042869 59 TVRAGRLLERLK----KEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNE 131 (707)
Q Consensus 59 ~~~~~~~~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~ 131 (707)
.+.++.+.+.+. .+++=.+|+|+++.- +..+.+.+.+-.-..++.+|++|.+.+ +...-..--..+.+.+++.
T Consensus 90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~ 169 (334)
T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPE 169 (334)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCH
Confidence 344445555443 245678999998744 445555555533344677777777644 3321112234678899999
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHH
Q 042869 132 KEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIV 170 (707)
Q Consensus 132 ~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 170 (707)
+++.+.+.+..+ .+ .+.+..++..++|.|..+.
T Consensus 170 ~~~~~~L~~~~~--~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 170 QYALTWLSREVT--MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHHHHHHccC--CC----HHHHHHHHHHcCCCHHHHH
Confidence 999888865421 11 2236788999999996543
No 224
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.14 E-value=0.38 Score=46.20 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNI 40 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 40 (707)
+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 32 ~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 32 PGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 7999999999998766543 4668899877 5555443
No 225
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.14 E-value=0.44 Score=45.76 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQ 41 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~ 41 (707)
+|+|||++|.+++....... .=..++|++....++...+.
T Consensus 28 ~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 28 FGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 69999999998876543221 01457899887777765543
No 226
>PRK07261 topology modulation protein; Provisional
Probab=93.12 E-value=0.16 Score=46.30 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=20.0
Q ss_pred CCCCcHHHHHHHHHHHhhh-ccCCCcEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKE-NNLFEKVIS 28 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~-~~~F~~~~w 28 (707)
++|+||||||+.+...... .-+.|...|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 5899999999999876432 223566666
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=1.9 Score=45.31 Aligned_cols=137 Identities=22% Similarity=0.324 Sum_probs=75.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||+||..++.. ..|..+--++.. ++. +... ......+..+++.--+..--.||+||
T Consensus 547 ~~sGKTaLAA~iA~~----S~FPFvKiiSpe---~mi----------G~sE---saKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 547 PGSGKTALAAKIALS----SDFPFVKIISPE---DMI----------GLSE---SAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred CCCChHHHHHHHHhh----cCCCeEEEeChH---Hcc----------CccH---HHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 699999999999864 246654433211 111 1110 00112223333333234567999999
Q ss_pred CCCccccccccccc---------------CCCCCCeEEEEeeCCccccccccCC----cceEEeecCCh-HHHHHHHHhh
Q 042869 82 IWGSLDLEAIGIPF---------------ADNNSGCKVLLTARSQDVLSCKMDC----QQNFFVDVLNE-KEAWSLFKKM 141 (707)
Q Consensus 82 v~~~~~~~~l~~~l---------------~~~~~gs~iivTtr~~~v~~~~~~~----~~~~~l~~L~~-~~a~~Lf~~~ 141 (707)
+...-+|-.++..+ |+.+..--|+-||..+.+.. .++. ...|.++.++. ++..+.++..
T Consensus 607 iErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 607 IERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred hhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 98877777665433 34444444555776677763 2222 34788888887 6777777654
Q ss_pred h-cCCCCCchhHHHHHHHHHHc
Q 042869 142 T-GDCRENGELKSVAAEIVKEC 162 (707)
Q Consensus 142 ~-~~~~~~~~~~~~~~~i~~~c 162 (707)
- |. ..+...++.+...+|
T Consensus 686 n~fs---d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 686 NIFS---DDEVRAIAEQLLSKK 704 (744)
T ss_pred cCCC---cchhHHHHHHHhccc
Confidence 3 21 223344455555555
No 228
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.99 E-value=0.058 Score=27.59 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=5.5
Q ss_pred CCcEEEcCCCchhhc
Q 042869 412 KLEILTLRGSNMQKL 426 (707)
Q Consensus 412 ~L~~L~l~~~~l~~l 426 (707)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.98 E-value=0.64 Score=53.94 Aligned_cols=126 Identities=14% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 77 (707)
+|+|||++|+.++....... .-+..+|.- +...++. +. ...+..+..+..+++.....++.+|
T Consensus 209 pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~a------g~--~~~ge~e~rl~~i~~~~~~~~~~IL 275 (821)
T CHL00095 209 PGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLLA------GT--KYRGEFEERLKRIFDEIQENNNIIL 275 (821)
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHhc------cC--CCccHHHHHHHHHHHHHHhcCCeEE
Confidence 79999999999998764321 113445521 2211111 11 1112223345556655554467999
Q ss_pred EEeCCCCcc---------cccccccccCCCCCCeEEEEeeCCccccc------cccCCcceEEeecCChHHHHHHHHhh
Q 042869 78 ILDDIWGSL---------DLEAIGIPFADNNSGCKVLLTARSQDVLS------CKMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 78 VlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtr~~~v~~------~~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
++|++.... +...+..+....+ .-++|-+|+..+... ........+.+...+.++...+++..
T Consensus 276 fiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 276 VIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 999995221 1112222211111 245666666544311 11122346788889999988887653
No 230
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.89 E-value=0.48 Score=46.05 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCCcHHHHHHHHHHHhh--hccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh-------hhhcchh-----hHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVK--ENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSHE-----TVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~~~~~ 66 (707)
+|+|||+|+..+.++.. .+..-+.++++-+.+.. ...++.+++.+.-..+ ...+... .-..-.+.
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiA 157 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA 157 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 58999999999887653 12234678888777655 5677777776542110 0111100 01122345
Q ss_pred HHHhc--CCcEEEEEeCCCC
Q 042869 67 ERLKK--EPKILIILDDIWG 84 (707)
Q Consensus 67 ~~l~~--~kr~LlVlDdv~~ 84 (707)
+++.. ++++|+++||+..
T Consensus 158 Eyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 158 EYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHhccCCeEEEEEcChhH
Confidence 55542 6899999999864
No 231
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.77 E-value=0.95 Score=44.51 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQG 42 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 42 (707)
+|+|||++|+++..... ...+.+++....+..+++.
T Consensus 30 ~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 30 AGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred CCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhh
Confidence 79999999999986321 1244555555555555543
No 232
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.75 E-value=0.23 Score=53.78 Aligned_cols=65 Identities=20% Similarity=0.371 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||.-|+++-. | .++-|++|.......+-..|...+....-... .++..-+|+|.
T Consensus 335 pGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a--------------dsrP~CLViDE 395 (877)
T KOG1969|consen 335 PGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA--------------DSRPVCLVIDE 395 (877)
T ss_pred CCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc--------------CCCcceEEEec
Confidence 79999999998887532 2 25678889888877776666554433221110 14678899999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
++-.
T Consensus 396 IDGa 399 (877)
T KOG1969|consen 396 IDGA 399 (877)
T ss_pred ccCC
Confidence 8744
No 233
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.42 E-value=0.62 Score=47.35 Aligned_cols=49 Identities=24% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHHhhh----ccCCCcEEEEEecCCcCHHHHHHHHHHHhchh
Q 042869 2 GGIGKTTLVKEVGRQVKE----NNLFEKVISSRVSQTPQIKNIQGEIAEKIGLE 51 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 51 (707)
+|+|||+|+..++-.... ...-..++|++....|+++.+.+ +++.++.+
T Consensus 135 ~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 135 FRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 699999999887643221 11124689999999999887755 55665543
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.39 E-value=0.66 Score=41.73 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCccc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDV 113 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v 113 (707)
++=.+|+||++.. +.++++...+-.-..++++|++|++..-
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 5678999999865 4566666665445568899999998664
No 235
>PRK04296 thymidine kinase; Provisional
Probab=92.32 E-value=0.11 Score=48.15 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhh--cchhhHHHHHHHHHHhcCCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAE--QSHETVRAGRLLERLKKEPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~kr~LlVl 79 (707)
.|.||||+|..++.+...+ -..++.+. ..++.+.....++++++..... .....+....+.+ ..++.-+||+
T Consensus 11 ~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~dvviI 84 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKIDCVLI 84 (190)
T ss_pred CCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCCEEEE
Confidence 3899999999888877554 22233332 1112222233455555543221 1112222333333 3334458999
Q ss_pred eCCCCc--ccccccccccCCCCCCeEEEEeeCCccc
Q 042869 80 DDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDV 113 (707)
Q Consensus 80 Ddv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v 113 (707)
|.+.-. ++..++...+ ...|-.||+|.++...
T Consensus 85 DEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 85 DEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred EccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 999643 2233332221 2347789999998554
No 236
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.23 E-value=0.51 Score=49.48 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~~~~ 68 (707)
+|+|||+|+..+....... +-+.++++-+.+.. .+.++.+++...-..+ ...++. .....-.+.++
T Consensus 147 ~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEy 225 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEY 225 (449)
T ss_pred CCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999988875432 34678888776554 4667777766431110 111110 11123345666
Q ss_pred Hh--cCCcEEEEEeCCCC
Q 042869 69 LK--KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~--~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 226 frd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 226 FRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHhcCCceEEEecChHH
Confidence 65 37899999999954
No 237
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.23 E-value=3.9 Score=39.59 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=44.9
Q ss_pred EeeCCccccccc-cCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHh
Q 042869 106 LTARSQDVLSCK-MDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKAL 176 (707)
Q Consensus 106 vTtr~~~v~~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 176 (707)
-|||.-.+.... -.-.-+..++..+.+|-.+...+.+..-. .+-.++-+.+|+++..|-|--+.-+-+..
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 488875543211 11123678899999999999988874211 11224568999999999997655544443
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.20 E-value=0.7 Score=41.45 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP 35 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 35 (707)
+|+||||+|+.+....... -..++|+......
T Consensus 8 ~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 8 TGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 6999999999998876442 3457777765544
No 239
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=1.4 Score=48.40 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||-+|++|+....-. |++|-.+ +++..-+ +..+..+++++++-++-+.|.|.||.
T Consensus 714 PGTGKTLlAKAVATEcsL~-------FlSVKGP----ELLNMYV----------GqSE~NVR~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736|consen 714 PGTGKTLLAKAVATECSLN-------FLSVKGP----ELLNMYV----------GQSEENVREVFERARSAAPCVIFFDE 772 (953)
T ss_pred CCCchHHHHHHHHhhceee-------EEeecCH----HHHHHHh----------cchHHHHHHHHHHhhccCCeEEEecc
Confidence 7999999999999876543 4454443 2222211 11344567777777766899999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+++.
T Consensus 773 LDSl 776 (953)
T KOG0736|consen 773 LDSL 776 (953)
T ss_pred cccc
Confidence 9753
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.13 E-value=0.32 Score=47.33 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.||.++.++.. +..+. +.+++ ..++.+++....... . ...++.+.+. +-=||||||
T Consensus 114 ~G~GKThLa~Ai~~~l~-~~g~s-v~f~~------~~el~~~Lk~~~~~~----~----~~~~l~~~l~--~~dlLIiDD 175 (254)
T COG1484 114 PGVGKTHLAIAIGNELL-KAGIS-VLFIT------APDLLSKLKAAFDEG----R----LEEKLLRELK--KVDLLIIDD 175 (254)
T ss_pred CCCcHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHHhcC----c----hHHHHHHHhh--cCCEEEEec
Confidence 69999999999999887 43233 33443 456666665544331 1 1123333333 245999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 176 lG~~ 179 (254)
T COG1484 176 IGYE 179 (254)
T ss_pred ccCc
Confidence 9754
No 241
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.08 E-value=0.56 Score=47.70 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHHHHHhhhc----cCCCcEEEEEecCCcCHHHHHHHHHHHhchh
Q 042869 2 GGIGKTTLVKEVGRQVKEN----NLFEKVISSRVSQTPQIKNIQGEIAEKIGLE 51 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 51 (707)
+|+|||++|..++-..... ..-..++|++....|.++.+. +|++.++.+
T Consensus 132 ~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 132 FRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 7999999998777532211 112369999999998887764 456665543
No 242
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.98 E-value=0.57 Score=49.45 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~-----~~~~~~~~~~~ 68 (707)
+|+|||||+..+....... +-+.++++-+.+.. .+.++..++...-.. ....++. .....-.+.++
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEy 230 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEY 230 (461)
T ss_pred CCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999998877643 56777777666544 566777777653211 0111110 01122334556
Q ss_pred Hh-c-CCcEEEEEeCCC
Q 042869 69 LK-K-EPKILIILDDIW 83 (707)
Q Consensus 69 l~-~-~kr~LlVlDdv~ 83 (707)
+. + |+++|+++|++.
T Consensus 231 frd~~G~~VLl~~DslT 247 (461)
T PRK12597 231 LRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHhcCCceEEEeccch
Confidence 54 2 689999999995
No 243
>PRK06921 hypothetical protein; Provisional
Probab=91.92 E-value=0.53 Score=46.25 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||+||.++++....+. -..++++.. .++...+...+ +......+.+. +-=||||||
T Consensus 126 ~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~-----------~~~~~~~~~~~--~~dlLiIDD 185 (266)
T PRK06921 126 PGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF-----------DLLEAKLNRMK--KVEVLFIDD 185 (266)
T ss_pred CCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH-----------HHHHHHHHHhc--CCCEEEEec
Confidence 69999999999999765431 233556553 23333332211 01122333343 356999999
Q ss_pred C
Q 042869 82 I 82 (707)
Q Consensus 82 v 82 (707)
+
T Consensus 186 l 186 (266)
T PRK06921 186 L 186 (266)
T ss_pred c
Confidence 9
No 244
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.88 E-value=0.56 Score=54.26 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||.+|+++....-.. ....+-++++.-.... .+.+-++.+....+.. ....+.+.+.+...-+|+||+
T Consensus 605 ~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~----~~~~l~g~~~gyvg~~--~~g~L~~~v~~~p~svvllDE 676 (852)
T TIGR03345 605 SGVGKTETALALAELLYGG--EQNLITINMSEFQEAH----TVSRLKGSPPGYVGYG--EGGVLTEAVRRKPYSVVLLDE 676 (852)
T ss_pred CCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----hhccccCCCCCccccc--ccchHHHHHHhCCCcEEEEec
Confidence 6999999999998765322 2222333333211111 1111122221111111 112344455555678999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 677 ieka 680 (852)
T TIGR03345 677 VEKA 680 (852)
T ss_pred hhhc
Confidence 9754
No 245
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.84 E-value=0.5 Score=44.15 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhc-CCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKK-EPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~kr~LlVlD 80 (707)
.|+|||.|++++.+.+..+ .-..+-| .+. +....-.+.+.++. .+||.|..|
T Consensus 94 RGtGKSSLVKA~~~e~~~~--glrLVEV--~k~-----------------------dl~~Lp~l~~~Lr~~~~kFIlFcD 146 (287)
T COG2607 94 RGTGKSSLVKALLNEYADE--GLRLVEV--DKE-----------------------DLATLPDLVELLRARPEKFILFCD 146 (287)
T ss_pred CCCChHHHHHHHHHHHHhc--CCeEEEE--cHH-----------------------HHhhHHHHHHHHhcCCceEEEEec
Confidence 4999999999999988765 2222222 110 11112234444442 478999999
Q ss_pred CCCCc---ccccccccccC---CCCCCeEEEEeeCCccc
Q 042869 81 DIWGS---LDLEAIGIPFA---DNNSGCKVLLTARSQDV 113 (707)
Q Consensus 81 dv~~~---~~~~~l~~~l~---~~~~gs~iivTtr~~~v 113 (707)
|..-+ ..+..++..+. ...+...++..|.++.-
T Consensus 147 DLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 147 DLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred CCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 99744 34555555553 23356677777777543
No 246
>PRK09354 recA recombinase A; Provisional
Probab=91.75 E-value=0.54 Score=47.60 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc-----chhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ-----SHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||||.+++...... -..++|++....++.. .+++++.+...- ...++....+...+.+++--+
T Consensus 69 ~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 69 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 6999999998877665433 4668899888777753 344444332110 112222333333333455679
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|.|..
T Consensus 142 IVIDSvaa 149 (349)
T PRK09354 142 IVVDSVAA 149 (349)
T ss_pred EEEeChhh
Confidence 99999863
No 247
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=2.2 Score=45.72 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=41.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|.|||.||++++++..+- ++.++-+ +|+..+.++ .+..+++++++-.+.-.+++++|+
T Consensus 232 PGCGKT~lA~AiAgel~vP-------f~~isAp--------eivSGvSGE------SEkkiRelF~~A~~~aPcivFiDe 290 (802)
T KOG0733|consen 232 PGCGKTSLANAIAGELGVP-------FLSISAP--------EIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDE 290 (802)
T ss_pred CCccHHHHHHHHhhhcCCc-------eEeecch--------hhhcccCcc------cHHHHHHHHHHHhccCCeEEEeec
Confidence 7999999999999987764 2333322 233333332 234456677766666789999999
Q ss_pred CCC
Q 042869 82 IWG 84 (707)
Q Consensus 82 v~~ 84 (707)
++-
T Consensus 291 IDA 293 (802)
T KOG0733|consen 291 IDA 293 (802)
T ss_pred ccc
Confidence 963
No 248
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=0.42 Score=48.45 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcc-hhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQS-HETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|||||||.-++..+...+. .+.+|+-. .+..++ +--++.++....... ..+...+.+.+.+.+.+.-++|+|
T Consensus 102 PGIGKSTLLLQva~~lA~~~---~vLYVsGE--ES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVID 175 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKRG---KVLYVSGE--ESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVID 175 (456)
T ss_pred CCCCHHHHHHHHHHHHHhcC---cEEEEeCC--cCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEe
Confidence 69999999999999887663 66666544 343332 112344443321111 123345667777777789999999
Q ss_pred CCCC
Q 042869 81 DIWG 84 (707)
Q Consensus 81 dv~~ 84 (707)
-+..
T Consensus 176 SIQT 179 (456)
T COG1066 176 SIQT 179 (456)
T ss_pred ccce
Confidence 9864
No 249
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.57 E-value=0.75 Score=46.44 Aligned_cols=48 Identities=23% Similarity=0.124 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhch
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGL 50 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 50 (707)
+|+||||+|..++....... .-..++|++....++...+ .++++.++.
T Consensus 105 ~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 105 FRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 69999999988875322110 1235789998887777764 344555443
No 250
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.54 E-value=3 Score=42.33 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|.|||.+|+++++.....
T Consensus 157 PGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 157 KGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCCHHHHHHHHHHHcCCC
Confidence 6999999999999987653
No 251
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.52 E-value=0.33 Score=48.67 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc-----chhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ-----SHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||||.++....... -..++|++..+.++.. .+++++.+...- ...++....+.....++.--+
T Consensus 64 ~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 64 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 6999999998877665432 3557888877666553 344444321110 112222333333333455679
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|.|..
T Consensus 137 IVIDSv~a 144 (321)
T TIGR02012 137 IVVDSVAA 144 (321)
T ss_pred EEEcchhh
Confidence 99999863
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.36 E-value=0.91 Score=52.09 Aligned_cols=143 Identities=16% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+++++..... | +.++.+ ++. .... .........+++........+|++|+
T Consensus 221 pGtGKT~laraia~~~~~~--~---i~i~~~------~i~----~~~~------g~~~~~l~~lf~~a~~~~p~il~iDE 279 (733)
T TIGR01243 221 PGTGKTLLAKAVANEAGAY--F---ISINGP------EIM----SKYY------GESEERLREIFKEAEENAPSIIFIDE 279 (733)
T ss_pred CCCChHHHHHHHHHHhCCe--E---EEEecH------HHh----cccc------cHHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 6999999999998865322 2 222211 111 1000 01122334444444444578999999
Q ss_pred CCCcc---c----------ccccccccCCC-CCCeEEEE-eeCCccccccc----cCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSL---D----------LEAIGIPFADN-NSGCKVLL-TARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~---~----------~~~l~~~l~~~-~~gs~iiv-Ttr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
++... + ...+...+... ..+..+|| ||....-.... ..-...+.+...+.++-.+++....
T Consensus 280 id~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 280 IDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh
Confidence 86421 0 11121111111 22444555 44332211100 1123467788888888888887654
Q ss_pred cCCCCCchhHHHHHHHHHHcCCcch
Q 042869 143 GDCRENGELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~c~g~Pl 167 (707)
.+..... ......+++.+.|.--
T Consensus 360 ~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 360 RNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred cCCCCcc--ccCHHHHHHhCCCCCH
Confidence 3221111 1124667778887653
No 253
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.30 E-value=1.1 Score=45.46 Aligned_cols=48 Identities=27% Similarity=0.271 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhch
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGL 50 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 50 (707)
+|+||||+|.+++-...... .=..++||+....++...+.+ +++.++.
T Consensus 104 ~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 104 FGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 69999999988876543210 113799999988888776554 4454443
No 254
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.28 E-value=1.1 Score=45.41 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=46.6
Q ss_pred CcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++=.+|+|++... +..+.+...+-....+..+|++|.+.+ +.......-..+.+.+++.+++.+.+.+.. .. .
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~-~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---VA-E 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---CC-c
Confidence 3344456887654 223333333322223455777777644 332212223578899999999988886541 11 1
Q ss_pred hhHHHHHHHHHHcCCcchH
Q 042869 150 ELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Pla 168 (707)
. . ..+..++|.|+.
T Consensus 189 ~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P-E----ERLAFHSGAPLF 202 (325)
T ss_pred H-H----HHHHHhCCChhh
Confidence 1 1 123568898864
No 255
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.16 E-value=0.52 Score=48.20 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHHhhhcc-------------------CCCcEEEEEecCCcC---HHHHHHHHHHHhchhhhhcchhh
Q 042869 2 GGIGKTTLVKEVGRQVKENN-------------------LFEKVISSRVSQTPQ---IKNIQGEIAEKIGLELAEQSHET 59 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~ 59 (707)
+|+||||+|.++.+..-... ....+..+..+.... ..+..+++.+.......
T Consensus 33 ~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~------ 106 (325)
T COG0470 33 PGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL------ 106 (325)
T ss_pred CCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC------
Confidence 59999999999998765322 123444555554444 23333333332222111
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCc
Q 042869 60 VRAGRLLERLKKEPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQ 111 (707)
Q Consensus 60 ~~~~~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~ 111 (707)
.++.-++++|+++.. +.-.++...+-.....+++|++|.+.
T Consensus 107 -----------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 107 -----------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred -----------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 245789999999855 33444444443445577888888753
No 256
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.16 E-value=0.38 Score=48.30 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc-----chhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ-----SHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||||.+++-..... -..++|++....+++. .+++++.+...- ...++....+.....++.--+
T Consensus 64 ~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 64 ESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 6999999998877655432 4568899887766653 334444321110 011222222322233445679
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|.|..
T Consensus 137 IVIDSvaa 144 (325)
T cd00983 137 IVVDSVAA 144 (325)
T ss_pred EEEcchHh
Confidence 99999853
No 257
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.14 E-value=0.92 Score=47.78 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
+|+|||||+..+........ =+.++++-+.+.. .+.++.+++...-.. .....+.. ....-.+.++
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEy 231 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEY 231 (463)
T ss_pred CCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999887765432 2456666665544 567777777653211 01111100 1122234555
Q ss_pred Hh--cCCcEEEEEeCCCC
Q 042869 69 LK--KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~--~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++|++..
T Consensus 232 frd~~G~~VLll~DslTR 249 (463)
T PRK09280 232 FRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHhcCCceEEEecchHH
Confidence 52 47899999999853
No 258
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=90.95 E-value=1.1 Score=50.25 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.+....... | +.++.+ ++..... +. .......+.+.......++|++|+
T Consensus 194 ~G~GKt~~~~~~a~~~~~~--f---~~is~~------~~~~~~~---g~-------~~~~~~~~f~~a~~~~P~IifIDE 252 (644)
T PRK10733 194 PGTGKTLLAKAIAGEAKVP--F---FTISGS------DFVEMFV---GV-------GASRVRDMFEQAKKAAPCIIFIDE 252 (644)
T ss_pred CCCCHHHHHHHHHHHcCCC--E---EEEehH------HhHHhhh---cc-------cHHHHHHHHHHHHhcCCcEEEehh
Confidence 7999999999998765432 2 222222 1111000 00 111223333333444678999999
Q ss_pred CCCcc------------cc----cccccccCCC--CCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------DL----EAIGIPFADN--NSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~~----~~l~~~l~~~--~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... .. ..+...+... ..+--+|.||...+..... ......+.+...+.++-.+++.
T Consensus 253 iD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~ 332 (644)
T PRK10733 253 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILK 332 (644)
T ss_pred HhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHH
Confidence 86431 01 1111111111 2234444466665543211 1234577788888888888888
Q ss_pred hhhcC
Q 042869 140 KMTGD 144 (707)
Q Consensus 140 ~~~~~ 144 (707)
.+...
T Consensus 333 ~~~~~ 337 (644)
T PRK10733 333 VHMRR 337 (644)
T ss_pred HHhhc
Confidence 77643
No 259
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=90.95 E-value=0.89 Score=42.85 Aligned_cols=78 Identities=17% Similarity=0.339 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhc-------hhhhhcchhh-----HHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIG-------LELAEQSHET-----VRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~-------~~~~~~~~~~-----~~~~~~~~~ 68 (707)
+|+|||+|+..+.+... -+.++++-+.+. ..+.++.+++...-. .....+.... ...-.+.++
T Consensus 24 ~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEy 99 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEY 99 (215)
T ss_dssp TTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHH
Confidence 69999999999998764 334477777654 456677777644311 0111111000 111223344
Q ss_pred Hh-cCCcEEEEEeCCC
Q 042869 69 LK-KEPKILIILDDIW 83 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~ 83 (707)
+. +||.+|+++||+.
T Consensus 100 frd~G~dVlli~Dslt 115 (215)
T PF00006_consen 100 FRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHTTSEEEEEEETHH
T ss_pred HhhcCCceeehhhhhH
Confidence 43 4789999999984
No 260
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.88 E-value=0.45 Score=53.94 Aligned_cols=127 Identities=16% Similarity=0.253 Sum_probs=65.6
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 77 (707)
+|+|||++|+.++....... ..++.+|.. ++..+ +. +. ...+........+.+.+.+.++.+|
T Consensus 216 pGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G~--~~~Ge~e~rl~~l~~~l~~~~~~IL 282 (758)
T PRK11034 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--GT--KYRGDFEKRFKALLKQLEQDTNSIL 282 (758)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--cc--chhhhHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999997653221 124455421 12111 11 11 1111122334455555554457899
Q ss_pred EEeCCCCc----------ccccccccccCCCCCCeEEEEeeCCccccc------cccCCcceEEeecCChHHHHHHHHhh
Q 042869 78 ILDDIWGS----------LDLEAIGIPFADNNSGCKVLLTARSQDVLS------CKMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 78 VlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~------~~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
++|++... .+...+..++... ..-++|-+|+..+... ....-...+.++..+.+++.+++...
T Consensus 283 fIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 283 FIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred EeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 99999632 1111122222221 1334554554443210 00112357899999999999998865
Q ss_pred h
Q 042869 142 T 142 (707)
Q Consensus 142 ~ 142 (707)
.
T Consensus 362 ~ 362 (758)
T PRK11034 362 K 362 (758)
T ss_pred H
Confidence 4
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.78 E-value=0.17 Score=42.92 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+.+..
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999875
No 262
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.77 E-value=0.95 Score=43.15 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQ 36 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 36 (707)
+|+||||+|.+++.....+ -..++|++....+.
T Consensus 28 ~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 28 PGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 7999999999988765432 34577887655543
No 263
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.70 E-value=0.31 Score=43.05 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSR 30 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (707)
.+|+||||||+++......+ -..+..++
T Consensus 10 lsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 47999999999999988765 33444544
No 264
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.53 E-value=0.84 Score=50.42 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+||||+++.++...
T Consensus 119 ~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 119 SGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999764
No 265
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=90.48 E-value=1 Score=47.10 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHHHhhhcc--CCC---------cEEEEEecCCcCHHHHHHHHHHHhc-hh-------hhhcch-----
Q 042869 2 GGIGKTTLVKEVGRQVKENN--LFE---------KVISSRVSQTPQIKNIQGEIAEKIG-LE-------LAEQSH----- 57 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~-------~~~~~~----- 57 (707)
+|+|||||+..+.+....-+ -.| .++++-+.+.....+.+.+.+..-+ .+ ...++.
T Consensus 150 sGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~ 229 (466)
T TIGR01040 150 AGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERII 229 (466)
T ss_pred CCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 59999999999887654100 012 4566667776666665555555433 10 011110
Q ss_pred hhHHHHHHHHHHh--cCCcEEEEEeCCCC
Q 042869 58 ETVRAGRLLERLK--KEPKILIILDDIWG 84 (707)
Q Consensus 58 ~~~~~~~~~~~l~--~~kr~LlVlDdv~~ 84 (707)
.....-.+.+++. +|+++|+++||+..
T Consensus 230 a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 230 TPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred HHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 0112233566666 47899999999953
No 266
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.38 E-value=0.37 Score=43.85 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
.+|+||||+|+++....+.+
T Consensus 9 yPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CCCCCchHHHHHHHHHHHHh
Confidence 37999999999999866543
No 267
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.33 E-value=1.4 Score=42.56 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 44 (707)
+|+|||++|.++......+ -..++|++... ++.++.+++
T Consensus 30 pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 7999999998776544322 45677877654 555666654
No 268
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.19 E-value=1.6 Score=41.84 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhch
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGL 50 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 50 (707)
+|+||||+|.++......+ . ..+++++ ...+..++.+++ ++++.
T Consensus 33 ~G~GKTtl~~~~~~~~~~~-g-~~~~yi~--~e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQN-G-YSVSYVS--TQLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCCCHHHHHHHHHHHHHhC-C-CcEEEEe--CCCCHHHHHHHH-HHhCC
Confidence 6999999986665544222 1 3355555 333556666666 34443
No 269
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=2.2 Score=40.05 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|.|||-||++||++.. +.|+.||... +.+..+.. ....+.+++---+..-.-.|++|.
T Consensus 190 pgtGktLlaraVahht~-------c~firvsgse----lvqk~ige----------gsrmvrelfvmarehapsiifmde 248 (404)
T KOG0728|consen 190 PGTGKTLLARAVAHHTD-------CTFIRVSGSE----LVQKYIGE----------GSRMVRELFVMAREHAPSIIFMDE 248 (404)
T ss_pred CCCchhHHHHHHHhhcc-------eEEEEechHH----HHHHHhhh----------hHHHHHHHHHHHHhcCCceEeeec
Confidence 69999999999997543 4467777532 22221110 111122222222223567888888
Q ss_pred CCCc------------cc----ccccccccCCC--CCCeEEEEeeCCccccc----cccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGS------------LD----LEAIGIPFADN--NSGCKVLLTARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~------------~~----~~~l~~~l~~~--~~gs~iivTtr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
+++. ++ .-++...+..+ .+.-+||..|..-.++. .....+..++.++-+++.-.++++
T Consensus 249 idsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 249 IDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred ccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 8643 00 11233344333 34668888887766652 122334567777777776666666
Q ss_pred hhh
Q 042869 140 KMT 142 (707)
Q Consensus 140 ~~~ 142 (707)
-+.
T Consensus 329 ihs 331 (404)
T KOG0728|consen 329 IHS 331 (404)
T ss_pred Hhh
Confidence 443
No 270
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.16 E-value=0.88 Score=47.00 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcc-hhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQS-HETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+|||||+.+++...... -..++|++..+ +..++.. -++.++....... ........+.+.+...+.-+||+|
T Consensus 91 pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVID 165 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASIEELKPDLVIID 165 (372)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEc
Confidence 6999999999998776543 34577776543 3333322 2344443221110 011123445555554456788999
Q ss_pred CCCC
Q 042869 81 DIWG 84 (707)
Q Consensus 81 dv~~ 84 (707)
.+..
T Consensus 166 SIq~ 169 (372)
T cd01121 166 SIQT 169 (372)
T ss_pred chHH
Confidence 8853
No 271
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.09 E-value=1.6 Score=46.28 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=44.3
Q ss_pred CCCcHHHHH-HHHHHHhhh-----ccCCCcEEEEEecCCcC-HHHHHHHHHHHhch-h-------hhhcchhhH-----H
Q 042869 2 GGIGKTTLV-KEVGRQVKE-----NNLFEKVISSRVSQTPQ-IKNIQGEIAEKIGL-E-------LAEQSHETV-----R 61 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~-~-------~~~~~~~~~-----~ 61 (707)
.|+|||+|| ..+.++... .+.-+.++++-+.+... +.+ +.+.+++-+. + ...++.... .
T Consensus 198 ~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~ 276 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYS 276 (574)
T ss_pred CCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCHHHHHHHHHH
Confidence 589999997 667776532 12345677888877654 334 3333333221 0 011110000 1
Q ss_pred HHHHHHHHh-cCCcEEEEEeCCCC
Q 042869 62 AGRLLERLK-KEPKILIILDDIWG 84 (707)
Q Consensus 62 ~~~~~~~l~-~~kr~LlVlDdv~~ 84 (707)
.-.+.+++. +|+.+|+|+||+..
T Consensus 277 a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 277 GVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHcCCCEEEEEcCchH
Confidence 122344443 47899999999964
No 272
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.00 E-value=0.74 Score=49.25 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEE-EecCC-cCHHHHHHHHHHHhchhhhhcch-----hhHHHHHHHHHHh-cCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISS-RVSQT-PQIKNIQGEIAEKIGLELAEQSH-----ETVRAGRLLERLK-KEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~~s~~-~~~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~~~~~l~-~~k 73 (707)
+|+|||||++.|.+..... +-++.++| -+.+. ..+.++.+.+-..+-........ .......+.+++. .|+
T Consensus 425 p~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~ 503 (672)
T PRK12678 425 PKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGK 503 (672)
T ss_pred CCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999876542 23443333 33333 23444433331111111111110 1122333445553 578
Q ss_pred cEEEEEeCCCC
Q 042869 74 KILIILDDIWG 84 (707)
Q Consensus 74 r~LlVlDdv~~ 84 (707)
.+||++|++..
T Consensus 504 dVlillDSlTR 514 (672)
T PRK12678 504 DVVVLLDSITR 514 (672)
T ss_pred CEEEEEeCchH
Confidence 99999999853
No 273
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.96 E-value=0.51 Score=43.76 Aligned_cols=70 Identities=23% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
|+|+||||=+..+++..-...+=+.+.-.++|+...+.-+...|-.-... +-.+-.|+.=.||||
T Consensus 56 pPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~---------------kv~lp~grhKIiILD 120 (333)
T KOG0991|consen 56 PPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQK---------------KVTLPPGRHKIIILD 120 (333)
T ss_pred CCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHh---------------hccCCCCceeEEEee
Confidence 68999999999998887665555667777777766654443333111000 011112455688999
Q ss_pred CCCCc
Q 042869 81 DIWGS 85 (707)
Q Consensus 81 dv~~~ 85 (707)
..++-
T Consensus 121 EADSM 125 (333)
T KOG0991|consen 121 EADSM 125 (333)
T ss_pred ccchh
Confidence 98765
No 274
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=89.96 E-value=1.1 Score=44.94 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc----ch-hhHHHHHHHHHH-hcCCcE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ----SH-ETVRAGRLLERL-KKEPKI 75 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----~~-~~~~~~~~~~~l-~~~kr~ 75 (707)
.|+||||||-.+....... -..++|++....++... +++++.+...- ++ .++.. .+.+.+ +.+.--
T Consensus 62 ~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al-~~~e~lirsg~~~ 133 (322)
T PF00154_consen 62 ESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQAL-WIAEQLIRSGAVD 133 (322)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHH-HHHHHHHHTTSES
T ss_pred CCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHH-HHHHHHhhccccc
Confidence 4789999998888765433 45688999887776643 34444432111 11 22222 333443 445556
Q ss_pred EEEEeCCCCc
Q 042869 76 LIILDDIWGS 85 (707)
Q Consensus 76 LlVlDdv~~~ 85 (707)
++|+|-|...
T Consensus 134 lVVvDSv~al 143 (322)
T PF00154_consen 134 LVVVDSVAAL 143 (322)
T ss_dssp EEEEE-CTT-
T ss_pred EEEEecCccc
Confidence 9999998654
No 275
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=89.89 E-value=1.6 Score=42.88 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH-hchhhhhcchhhHHHHHHHHHHhc-C--CcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK-IGLELAEQSHETVRAGRLLERLKK-E--PKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~l~~-~--kr~Ll 77 (707)
.|+||||+|-+++-...-. -..++|++..+.+++..+.+ +... +..-.-.....-+.+..+.+.+.+ . +--|+
T Consensus 69 ~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~Lv 145 (279)
T COG0468 69 ESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLL 145 (279)
T ss_pred CCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEE
Confidence 5899999997766443322 34889999999898876544 3333 221111111122223333333322 1 25689
Q ss_pred EEeCCCC
Q 042869 78 ILDDIWG 84 (707)
Q Consensus 78 VlDdv~~ 84 (707)
|+|.|-.
T Consensus 146 VVDSvaa 152 (279)
T COG0468 146 VVDSVAA 152 (279)
T ss_pred EEecCcc
Confidence 9998853
No 276
>PTZ00035 Rad51 protein; Provisional
Probab=89.81 E-value=1.7 Score=44.33 Aligned_cols=48 Identities=27% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHHHHHhhh---c-cCCCcEEEEEecCCcCHHHHHHHHHHHhch
Q 042869 2 GGIGKTTLVKEVGRQVKE---N-NLFEKVISSRVSQTPQIKNIQGEIAEKIGL 50 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 50 (707)
+|+|||||+..++-.... . ..=..++|++....++.+.+ .+++++++.
T Consensus 127 ~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 127 FRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 699999999888754331 0 01235779988877777664 344555443
No 277
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.77 E-value=1.7 Score=44.16 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHHHHHhhhccC----CCcEEEEEecCCcCHHHHHHHHHHHhc
Q 042869 2 GGIGKTTLVKEVGRQVKENNL----FEKVISSRVSQTPQIKNIQGEIAEKIG 49 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 49 (707)
+|+|||++|.+++-....... =..++|++....+++..+.+ +++.++
T Consensus 111 ~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 111 FGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 699999999888755322111 14799999988888777654 344444
No 278
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.39 E-value=1.3 Score=40.29 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
++|+||||+++.++......
T Consensus 8 ~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 47999999999998876543
No 279
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.37 E-value=2.3 Score=40.35 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||-+|+++.+...+- | +.+. ..++ |-+.+|. ....+.++-++-.+.-.+.+.+|.
T Consensus 160 pGTGKTm~Akalane~kvp--~-----l~vk----at~l---iGehVGd-------gar~Ihely~rA~~~aPcivFiDE 218 (368)
T COG1223 160 PGTGKTMMAKALANEAKVP--L-----LLVK----ATEL---IGEHVGD-------GARRIHELYERARKAAPCIVFIDE 218 (368)
T ss_pred CCccHHHHHHHHhcccCCc--e-----EEec----hHHH---HHHHhhh-------HHHHHHHHHHHHHhcCCeEEEehh
Confidence 6999999999999876653 2 2111 1111 1122222 112233333333334589999998
Q ss_pred CCCc--------------ccccccccccC--CCCCCeEEEEeeCCccccccccC--CcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGS--------------LDLEAIGIPFA--DNNSGCKVLLTARSQDVLSCKMD--CQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~--------------~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~~~--~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++-. +-.+++...+. ..+.|-.-|-.|.+.+.+..+.. -...++..--+++|-..+++..+-
T Consensus 219 ~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 219 LDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred hhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 8632 11222322332 22346666666666666532222 234667777888888888888773
No 280
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=89.37 E-value=1.7 Score=45.77 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh-------hhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~~~~~~~ 68 (707)
+|+|||||+..+....... +=+.++++-+.+.. .+.++++++...-... ...++.. .-..-.+.++
T Consensus 152 ~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEy 230 (461)
T TIGR01039 152 AGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEY 230 (461)
T ss_pred CCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999988765432 22466777665543 5677777775431110 1111100 1122335566
Q ss_pred Hh--cCCcEEEEEeCCCC
Q 042869 69 LK--KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~--~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 231 frd~~G~~VLll~DslTR 248 (461)
T TIGR01039 231 FRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHhcCCeeEEEecchhH
Confidence 64 36899999999954
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.37 E-value=0.41 Score=41.78 Aligned_cols=24 Identities=33% Similarity=0.655 Sum_probs=19.4
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCc
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEK 25 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~ 25 (707)
|+|+||||+++.+.+..+... |..
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcC-cee
Confidence 799999999999998776653 544
No 282
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=89.36 E-value=0.96 Score=44.03 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=43.0
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCcE-EEEEecCC-cCHHHHHHHHHHHhch-------hhhhcchhh-----HHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEKV-ISSRVSQT-PQIKNIQGEIAEKIGL-------ELAEQSHET-----VRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~~~~~~ 66 (707)
+|+|||+|| ..+.+.. .-+.+ +++-+.+. ....++.+++.+.-.. ....++... ...-.+.
T Consensus 78 ~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiA 153 (274)
T cd01132 78 RQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMG 153 (274)
T ss_pred CCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHH
Confidence 479999996 5565532 23444 55555554 3566777777643211 011111011 0122334
Q ss_pred HHHh-cCCcEEEEEeCCCCc
Q 042869 67 ERLK-KEPKILIILDDIWGS 85 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~~ 85 (707)
+++. +|+.+|+|+||+...
T Consensus 154 E~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 154 EYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHCCCCEEEEEcChHHH
Confidence 4443 468999999998643
No 283
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=89.33 E-value=1.2 Score=47.06 Aligned_cols=83 Identities=23% Similarity=0.255 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCC--cEEEEEecCCc-CHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFE--KVISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~~ 66 (707)
.|+|||||+..+.+.......+. .++++-+.+.. .+.++.+++...-..+ ...++. ..-..-.+.
T Consensus 150 ~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 229 (458)
T TIGR01041 150 SGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAA 229 (458)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 59999999999988654321121 45566665544 5667777776432110 011110 011223356
Q ss_pred HHHh--cCCcEEEEEeCCCC
Q 042869 67 ERLK--KEPKILIILDDIWG 84 (707)
Q Consensus 67 ~~l~--~~kr~LlVlDdv~~ 84 (707)
+++. +|+++|+++||+..
T Consensus 230 Eyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 230 EYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHccCCcEEEEEcChhH
Confidence 6666 57899999999853
No 284
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.32 E-value=0.55 Score=53.69 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||++|+.++... +...+.+++++-..... +..-++.+....+ .+....+.+.+.....-+|+||+
T Consensus 493 ~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~----~~~lig~~~gyvg--~~~~~~l~~~~~~~p~~VvllDE 561 (731)
T TIGR02639 493 TGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT----VSRLIGAPPGYVG--FEQGGLLTEAVRKHPHCVLLLDE 561 (731)
T ss_pred CCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc----HHHHhcCCCCCcc--cchhhHHHHHHHhCCCeEEEEec
Confidence 6999999999998765 23345566554322111 1111222211111 11223344455444457999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
++..
T Consensus 562 ieka 565 (731)
T TIGR02639 562 IEKA 565 (731)
T ss_pred hhhc
Confidence 9854
No 285
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.29 E-value=0.26 Score=42.28 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+++....
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999874
No 286
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.20 E-value=1.7 Score=39.09 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCc-EE-EEEecCCcCHHHHHHHHHHHh-----ch--hhhhcc--h----hhHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEK-VI-SSRVSQTPQIKNIQGEIAEKI-----GL--ELAEQS--H----ETVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~-wv~~s~~~~~~~~~~~i~~~l-----~~--~~~~~~--~----~~~~~~~~~ 66 (707)
.|.||||.|-.+.-+...+ .+.+ ++ |+.-.........++.+ .+ +. ...... . .........
T Consensus 14 ~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~a~ 90 (173)
T TIGR00708 14 NGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIAKAAWQHAK 90 (173)
T ss_pred CCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHHHHHHHHHH
Confidence 4899999998887765543 2332 11 33322122333333332 11 11 000000 0 112334445
Q ss_pred HHHhcCCcEEEEEeCCCCcc-----cccccccccCCCCCCeEEEEeeCCc
Q 042869 67 ERLKKEPKILIILDDIWGSL-----DLEAIGIPFADNNSGCKVLLTARSQ 111 (707)
Q Consensus 67 ~~l~~~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtr~~ 111 (707)
+.+..++-=++|||.+-..- +.+++...+.....+.-||+|-|+.
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 55556666699999985332 2333333343344467899999985
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.02 E-value=2 Score=41.48 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 44 (707)
+|+|||++|.++......+ =..++|++..+ +..++.+++
T Consensus 34 ~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~--~~~~~~~~~ 72 (234)
T PRK06067 34 HGTGKSVLSQQFVYGALKQ--GKKVYVITTEN--TSKSYLKQM 72 (234)
T ss_pred CCCChHHHHHHHHHHHHhC--CCEEEEEEcCC--CHHHHHHHH
Confidence 6999999999986543222 34677887764 445666654
No 288
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.02 E-value=3.2 Score=48.48 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHhhhccC----CCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhc-CCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNL----FEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKK-EPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~kr~L 76 (707)
+|+|||++|+.+......... .+..+|.- ++..+. . +. ...+.....+..+++.+.+ +++.+
T Consensus 203 pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----a--~~--~~~g~~e~~l~~~l~~~~~~~~~~I 269 (852)
T TIGR03346 203 PGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----A--GA--KYRGEFEERLKAVLNEVTKSEGQII 269 (852)
T ss_pred CCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----h--cc--hhhhhHHHHHHHHHHHHHhcCCCeE
Confidence 699999999999887643211 12333321 111111 0 00 1111122334455555532 35899
Q ss_pred EEEeCCCCcc---------cccccccccCCCCCC-eEEEEeeCCccccc------cccCCcceEEeecCChHHHHHHHHh
Q 042869 77 IILDDIWGSL---------DLEAIGIPFADNNSG-CKVLLTARSQDVLS------CKMDCQQNFFVDVLNEKEAWSLFKK 140 (707)
Q Consensus 77 lVlDdv~~~~---------~~~~l~~~l~~~~~g-s~iivTtr~~~v~~------~~~~~~~~~~l~~L~~~~a~~Lf~~ 140 (707)
|++|++.... +...+..+.. ..| -++|-+|...+.-. ....-...+.+...+.++..+++..
T Consensus 270 LfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~ 347 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRG 347 (852)
T ss_pred EEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHH
Confidence 9999996431 1112222221 223 35555555443310 0111234688999999999998876
Q ss_pred hh
Q 042869 141 MT 142 (707)
Q Consensus 141 ~~ 142 (707)
..
T Consensus 348 ~~ 349 (852)
T TIGR03346 348 LK 349 (852)
T ss_pred HH
Confidence 54
No 289
>CHL00206 ycf2 Ycf2; Provisional
Probab=88.88 E-value=4.6 Score=49.77 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCcc--c-----ccccccccCCC----CCCeEEEEeeCC-ccccc----cccCCcceEE
Q 042869 62 AGRLLERLKKEPKILIILDDIWGSL--D-----LEAIGIPFADN----NSGCKVLLTARS-QDVLS----CKMDCQQNFF 125 (707)
Q Consensus 62 ~~~~~~~l~~~kr~LlVlDdv~~~~--~-----~~~l~~~l~~~----~~gs~iivTtr~-~~v~~----~~~~~~~~~~ 125 (707)
+..+.+.-++..+++|.+|+++... + +..+...+... ..+..|||.+++ .++.. ....-+..+.
T Consensus 1721 Ir~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~ 1800 (2281)
T CHL00206 1721 ITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1800 (2281)
T ss_pred HHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEE
Confidence 3444444445568999999997542 1 22332222211 123345665555 33331 1122345777
Q ss_pred eecCChHHHHHHHH
Q 042869 126 VDVLNEKEAWSLFK 139 (707)
Q Consensus 126 l~~L~~~~a~~Lf~ 139 (707)
++.++..+-.+.|.
T Consensus 1801 Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1801 IRRLLIPQQRKHFF 1814 (2281)
T ss_pred eCCCCchhHHHHHH
Confidence 87777655544443
No 290
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.66 E-value=2.1 Score=46.21 Aligned_cols=122 Identities=14% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|.|||++|+++++.-... | +.++.+ ++ +..-- ++.+..+.+++++-++-..++|.||.
T Consensus 477 PGC~KT~lAkalAne~~~n--F-----lsvkgp----EL----~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDE 535 (693)
T KOG0730|consen 477 PGCGKTLLAKALANEAGMN--F-----LSVKGP----EL----FSKYV------GESERAIREVFRKARQVAPCIIFFDE 535 (693)
T ss_pred CCcchHHHHHHHhhhhcCC--e-----eeccCH----HH----HHHhc------CchHHHHHHHHHHHhhcCCeEEehhh
Confidence 7999999999999865443 3 333221 11 11100 11233344455444444568888888
Q ss_pred CCCcc-------------cccccccccCCCCC-CeEEEEeeCCcc-cc-cc---ccCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSL-------------DLEAIGIPFADNNS-GCKVLLTARSQD-VL-SC---KMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~-------------~~~~l~~~l~~~~~-gs~iivTtr~~~-v~-~~---~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
++... -+.++......... +..+||...|+. .. .. ....+..+-++.-+.+.-.++|.+++
T Consensus 536 iDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~ 615 (693)
T KOG0730|consen 536 IDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA 615 (693)
T ss_pred HHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHH
Confidence 76431 12222223322222 344555444432 21 11 11245567777777777788999888
Q ss_pred cC
Q 042869 143 GD 144 (707)
Q Consensus 143 ~~ 144 (707)
..
T Consensus 616 kk 617 (693)
T KOG0730|consen 616 KK 617 (693)
T ss_pred hc
Confidence 53
No 291
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.53 E-value=0.74 Score=53.61 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||++|+.+....... -...+.++++.-.....+ . +-++.+....+ .+....+.+.+......+|+||+
T Consensus 604 ~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-~---~l~g~~~g~~g--~~~~g~l~~~v~~~p~~vlllDe 675 (852)
T TIGR03346 604 TGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-A---RLIGAPPGYVG--YEEGGQLTEAVRRKPYSVVLFDE 675 (852)
T ss_pred CCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH-H---HhcCCCCCccC--cccccHHHHHHHcCCCcEEEEec
Confidence 6999999999999764322 223444555542221111 1 11222211111 11112344444443456999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 676 ieka 679 (852)
T TIGR03346 676 VEKA 679 (852)
T ss_pred cccC
Confidence 9855
No 292
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=88.50 E-value=0.46 Score=46.64 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
.+|+||||+|+.+......
T Consensus 9 ~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 4799999999999987665
No 293
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.49 E-value=2.1 Score=39.85 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhchhhhhcch---hhHHHHHHHHHHhcCCcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGLELAEQSH---ETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~~~~~l~~~kr~Ll 77 (707)
.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+...... ..+...+..+.....+.=+|
T Consensus 10 tGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~v 87 (196)
T PF00448_consen 10 TGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLV 87 (196)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEE
T ss_pred CCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEE
Confidence 6999999999888877654 334666666533 34566677788888876433221 22233333444433233578
Q ss_pred EEeCCC
Q 042869 78 ILDDIW 83 (707)
Q Consensus 78 VlDdv~ 83 (707)
++|-..
T Consensus 88 lIDT~G 93 (196)
T PF00448_consen 88 LIDTAG 93 (196)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 888774
No 294
>PRK06835 DNA replication protein DnaC; Validated
Probab=88.45 E-value=1.5 Score=44.41 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=20.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRV 31 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (707)
.|+|||.||.++++....+ -..++++++
T Consensus 192 ~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 192 TGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 5999999999999987544 224555553
No 295
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.25 E-value=2.4 Score=49.36 Aligned_cols=125 Identities=14% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEE-EEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHh-cCCcE
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVIS-SRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLK-KEPKI 75 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~w-v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-~~kr~ 75 (707)
+|+|||++|+.+........ ..+..+| ++++. +.. + ....+.-...+..+++.+. .+++.
T Consensus 208 pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a------g--~~~~g~~e~~lk~~~~~~~~~~~~~ 273 (857)
T PRK10865 208 PGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA------G--AKYRGEFEERLKGVLNDLAKQEGNV 273 (857)
T ss_pred CCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh------c--cchhhhhHHHHHHHHHHHHHcCCCe
Confidence 79999999999998764321 1123332 22221 110 0 0111112223344444432 24679
Q ss_pred EEEEeCCCCcc---------cccccccccCCCCCC-eEEEEeeCCcccc------ccccCCcceEEeecCChHHHHHHHH
Q 042869 76 LIILDDIWGSL---------DLEAIGIPFADNNSG-CKVLLTARSQDVL------SCKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 76 LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~iivTtr~~~v~------~~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
+|++|++.... +...+..+.. ..| -++|-+|...+.. .....-...+.+...+.++...+++
T Consensus 274 ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~ 351 (857)
T PRK10865 274 ILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILR 351 (857)
T ss_pred EEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHH
Confidence 99999986431 1122222221 223 3555555554431 0011112366777778999999887
Q ss_pred hhh
Q 042869 140 KMT 142 (707)
Q Consensus 140 ~~~ 142 (707)
...
T Consensus 352 ~l~ 354 (857)
T PRK10865 352 GLK 354 (857)
T ss_pred HHh
Confidence 654
No 296
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=88.25 E-value=0.33 Score=41.62 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT 34 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 34 (707)
+|+||||+|.+++....-. |+++|+-
T Consensus 16 PG~GKstl~~~lae~~~~~-------~i~isd~ 41 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKTGLE-------YIEISDL 41 (176)
T ss_pred CCCCchhHHHHHHHHhCCc-------eEehhhH
Confidence 7999999999998654433 6666653
No 297
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=88.13 E-value=2 Score=45.55 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh--------------hhhcch-----hhHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE--------------LAEQSH-----ETVR 61 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------------~~~~~~-----~~~~ 61 (707)
+|+|||||+..+....... +=+.++++-+.+.. .+.++..++...-... ...++. ..-.
T Consensus 170 ~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~ 248 (494)
T CHL00060 170 AGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT 248 (494)
T ss_pred CCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHH
Confidence 5999999999888774432 12677887776654 4677777776521100 000000 0012
Q ss_pred HHHHHHHHhc-C-CcEEEEEeCCCC
Q 042869 62 AGRLLERLKK-E-PKILIILDDIWG 84 (707)
Q Consensus 62 ~~~~~~~l~~-~-kr~LlVlDdv~~ 84 (707)
.-.+.+++.. + +++||++||+..
T Consensus 249 A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 249 ALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHcCCCCEEEEcccchH
Confidence 2335666643 4 499999999953
No 298
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=88.04 E-value=0.98 Score=41.22 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||+|+.+......
T Consensus 9 pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 9 PGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 799999999999998544
No 299
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=87.78 E-value=1.7 Score=46.12 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=46.4
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCc-EEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhh-----HHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEK-VISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHET-----VRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~~~~~~ 66 (707)
.|+|||||| ..+.+.. .-+. ++++-+.+.. .+.++.+.+.+.-.. ....++... -..-.+.
T Consensus 171 ~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiA 246 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIG 246 (497)
T ss_pred CCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 399999997 5777753 2455 6777777664 566777777654211 011111000 1122344
Q ss_pred HHHh-cCCcEEEEEeCCCC
Q 042869 67 ERLK-KEPKILIILDDIWG 84 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~ 84 (707)
+++. +|+.+|||+||+..
T Consensus 247 Eyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 247 EHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHhCCCCEEEEEcChhH
Confidence 5553 47899999999964
No 300
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.70 E-value=0.84 Score=53.01 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||++|+.+++..-.. -...+.++++.-.. ... ..+-++.+....+ .+....+.+.+.....-+|+||+
T Consensus 607 ~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~~---~~~LiG~~pgy~g--~~~~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 607 TGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KHS---VSRLVGAPPGYVG--YEEGGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hhh---HHHHhCCCCcccc--cchhHHHHHHHHhCCCCeEEEee
Confidence 6999999999998754321 12334455443211 111 1111222211111 11112233444333346999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 679 ieka 682 (857)
T PRK10865 679 VEKA 682 (857)
T ss_pred hhhC
Confidence 9854
No 301
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=87.68 E-value=1.7 Score=45.64 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHh-----chhhhh-cch-----hhHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKI-----GLELAE-QSH-----ETVRAGRLLERLK 70 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~-~~~-----~~~~~~~~~~~l~ 70 (707)
.|+|||||++.+...... ...+++..-.+..++.++....+... ..-... ++. .....-.+.+++.
T Consensus 174 SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 174 SGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred CCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599999999888754322 22345544334445555544443332 111111 110 0111222444443
Q ss_pred -cCCcEEEEEeCCCC
Q 042869 71 -KEPKILIILDDIWG 84 (707)
Q Consensus 71 -~~kr~LlVlDdv~~ 84 (707)
+|+.+|+++||+..
T Consensus 251 d~G~~Vll~~DslTr 265 (450)
T PRK06002 251 DRGENVLLIVDSVTR 265 (450)
T ss_pred HcCCCEEEeccchHH
Confidence 47899999999853
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.62 E-value=2.1 Score=44.03 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
.|+||||++.++......+.....+..+.... .....+-++...+.++.+........+ .......+. ++-+|++|
T Consensus 146 tGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-l~~~l~~l~--~~DlVLID 222 (374)
T PRK14722 146 TGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAELR--NKHMVLID 222 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-HHHHHHHhc--CCCEEEEc
Confidence 69999999999998764431123455555332 223445555566666665433322222 233334443 34677799
Q ss_pred CCCCc
Q 042869 81 DIWGS 85 (707)
Q Consensus 81 dv~~~ 85 (707)
.....
T Consensus 223 TaG~~ 227 (374)
T PRK14722 223 TIGMS 227 (374)
T ss_pred CCCCC
Confidence 98643
No 303
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=87.60 E-value=7.5 Score=38.85 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCc-cccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+.+=++|+|+++... ..+.+...+-.-..++.+|++|.+. .+...-......+++.++++++..+.+.+. + .+
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~--~~- 164 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N--KE- 164 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C--CC-
Confidence 356788889986543 3445554554444566677666553 333222233568899999999988777653 1 11
Q ss_pred chhHHHHHHHHHHcCCcchHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
++.+..++...+|.=-|+..
T Consensus 165 ---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 165 ---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred ---hhHHHHHHHHcCCHHHHHHH
Confidence 23355566666652234333
No 304
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.56 E-value=2.2 Score=37.74 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+|+.+.....
T Consensus 8 ~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 8 SGSGKSTIARALEEKLF 24 (149)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999988764
No 305
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=87.46 E-value=1.8 Score=45.89 Aligned_cols=82 Identities=26% Similarity=0.286 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHHHhhhc---cCCCcEEEEEecCCc-CHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKEN---NLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRL 65 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~ 65 (707)
.|+|||||+..+.++.... ..+ .++++-+.+.. .+.++.+++.+.-..+ ...++. ..-..-.+
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~ti 230 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTA 230 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5999999999988875432 111 46666666554 5677777776542110 111110 01122345
Q ss_pred HHHHh--cCCcEEEEEeCCCC
Q 042869 66 LERLK--KEPKILIILDDIWG 84 (707)
Q Consensus 66 ~~~l~--~~kr~LlVlDdv~~ 84 (707)
.+++. +|+++|+++||+..
T Consensus 231 AEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 231 AEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHhcCCcEEEEEcChHH
Confidence 66765 57999999999853
No 306
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=87.33 E-value=0.86 Score=45.46 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=26.0
Q ss_pred cEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccc
Q 042869 74 KILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDV 113 (707)
Q Consensus 74 r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 113 (707)
+-+||+|...+... .+++..+--.+.|||||.|---.++
T Consensus 352 ~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTP-HELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCH-HHHHHHHHhccCCCEEEEcCCHHHc
Confidence 57999999987632 2233344456889999987654443
No 307
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=87.28 E-value=1.7 Score=45.47 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
.|+|||||++.+..... .+.++.+-+.+.. .+.++.++++..-+. ...+++.. ....-.+.++
T Consensus 171 sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEy 246 (444)
T PRK08972 171 SGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEY 246 (444)
T ss_pred CCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999986432 3555556555544 456676665443111 01111100 1112234455
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 247 frd~G~~VLl~~DslTR 263 (444)
T PRK08972 247 FRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHcCCCEEEEEcChHH
Confidence 53 47899999999853
No 308
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=87.14 E-value=2.9 Score=42.23 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIA 45 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~ 45 (707)
.|+|||+|++++.+.. .-+.++++-+.+.. .+.+++.++-
T Consensus 166 ~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 166 FGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 5899999999998853 24577777776554 4666776653
No 309
>PRK04328 hypothetical protein; Provisional
Probab=87.05 E-value=2.5 Score=41.16 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhc
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIG 49 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 49 (707)
+|+|||+||.++......+ -..++|++..+ ++.++.+. +++++
T Consensus 32 pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee--~~~~i~~~-~~~~g 74 (249)
T PRK04328 32 PGTGKSIFSQQFLWNGLQM--GEPGVYVALEE--HPVQVRRN-MRQFG 74 (249)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEeeC--CHHHHHHH-HHHcC
Confidence 6999999998876654322 45677887655 34444433 33444
No 310
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.88 E-value=0.85 Score=52.92 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|+|||++|+.+.+..-.. -...+-+++++-.....+.+ -++.+....+ .+....+.+.+.....-+++||+
T Consensus 548 ~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~----l~g~~~gyvg--~~~~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 548 TGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSK----LIGSPPGYVG--YNEGGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred CCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHH----hcCCCCcccC--cCccchHHHHHHhCCCeEEEECC
Confidence 5999999999998764221 12334445544322211111 1222211111 11122344555543446999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
++..
T Consensus 620 ieka 623 (821)
T CHL00095 620 IEKA 623 (821)
T ss_pred hhhC
Confidence 9854
No 311
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=86.86 E-value=1.3 Score=39.54 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
.+|+||||+|.+++.....+
T Consensus 31 LSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999876543
No 312
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.76 E-value=1.1 Score=47.00 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||-||++|+..-.+- | |.....+|+. ++- +. ....++.++..-+..-.+.|.+|.
T Consensus 346 PGTGKTlLARAvAGEA~VP--F----F~~sGSEFdE------m~V--Gv-------GArRVRdLF~aAk~~APcIIFIDE 404 (752)
T KOG0734|consen 346 PGTGKTLLARAVAGEAGVP--F----FYASGSEFDE------MFV--GV-------GARRVRDLFAAAKARAPCIIFIDE 404 (752)
T ss_pred CCCchhHHHHHhhcccCCC--e----Eeccccchhh------hhh--cc-------cHHHHHHHHHHHHhcCCeEEEEec
Confidence 7999999999999776554 1 2233334431 110 00 122345555555555689999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
++..
T Consensus 405 iDav 408 (752)
T KOG0734|consen 405 IDAV 408 (752)
T ss_pred hhhh
Confidence 8743
No 313
>PHA02244 ATPase-like protein
Probab=86.74 E-value=2 Score=43.73 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||++|++++....
T Consensus 128 pGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 128 AGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998743
No 314
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.73 E-value=0.018 Score=52.90 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=58.0
Q ss_pred CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEE
Q 042869 338 GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEIL 416 (707)
Q Consensus 338 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L 416 (707)
+..+...+.|+++.|....+-.. |+.++.|..|+++.+.+..+|.+++.+..++.+++..|..+. |.+.+++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34556666777776655544433 455666777777777777777777777777777777666655 6677777777777
Q ss_pred EcCCCchh
Q 042869 417 TLRGSNMQ 424 (707)
Q Consensus 417 ~l~~~~l~ 424 (707)
++.++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77776543
No 315
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.72 E-value=2.2 Score=42.41 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+||||++..++.....+..-..+..++..... ...+-+....+.++.+..... .........+.+. +.=+|++|
T Consensus 203 tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~-~~~~l~~~l~~~~--~~d~vliD 279 (282)
T TIGR03499 203 TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR-DPKELRKALDRLR--DKDLILID 279 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC-CHHHHHHHHHHcc--CCCEEEEe
Confidence 6999999999998776543111234455544321 222333334444444432222 2222344444443 23578888
Q ss_pred CC
Q 042869 81 DI 82 (707)
Q Consensus 81 dv 82 (707)
..
T Consensus 280 t~ 281 (282)
T TIGR03499 280 TA 281 (282)
T ss_pred CC
Confidence 64
No 316
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=86.71 E-value=3.6 Score=40.34 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ 33 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 33 (707)
+|+||||+|.++......+ =..+++++...
T Consensus 45 pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 45 SDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 7999999999876654332 34577787764
No 317
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=34 Score=35.73 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=41.2
Q ss_pred eEEEE-eeCCccccc----cccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHH-HHHHHH
Q 042869 102 CKVLL-TARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAI-VPIAKA 175 (707)
Q Consensus 102 s~iiv-Ttr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai-~~~~~~ 175 (707)
-|||| ||.+.+-+. +....+-.+.|..=+...-..|+....+...++. +..+|.+...|.-+.- .+.+.+
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHH
Confidence 36655 666666542 1112234567777778887888887776444343 4555555555554433 344455
Q ss_pred hccC
Q 042869 176 LKNK 179 (707)
Q Consensus 176 l~~~ 179 (707)
+.++
T Consensus 414 m~~~ 417 (457)
T KOG0743|consen 414 MKNK 417 (457)
T ss_pred hhcc
Confidence 5555
No 318
>PRK03839 putative kinase; Provisional
Probab=86.67 E-value=0.45 Score=43.79 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
|+|+||||+|+.+++....
T Consensus 8 ~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 6899999999999987643
No 319
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.64 E-value=1.9 Score=46.00 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcc-hhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQS-HETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+|||||+.+++.....+ -..++|++..+ +..++... ++.++.+...-. ........+.+.+.+.+.-+||+|
T Consensus 89 pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVID 163 (446)
T PRK11823 89 PGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVID 163 (446)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEEe
Confidence 6999999999998876532 23567776544 33333322 344443211100 011123344455544455678888
Q ss_pred CCC
Q 042869 81 DIW 83 (707)
Q Consensus 81 dv~ 83 (707)
.+.
T Consensus 164 SIq 166 (446)
T PRK11823 164 SIQ 166 (446)
T ss_pred chh
Confidence 875
No 320
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=86.53 E-value=2.9 Score=39.12 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIA 45 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 45 (707)
=|+||||.++.++...+.+. + .++|..-.....+.+.+++++
T Consensus 12 DGaGKTT~~~~L~~~l~~~g-~-~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 12 DGAGKTTQAELLKERLEERG-I-KVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred CCCCHHHHHHHHHHHHHHcC-C-eEEEEeCCCCChHHHHHHHHH
Confidence 49999999999999888763 2 444443322233444444444
No 321
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=86.51 E-value=3.5 Score=38.00 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 44 (707)
+|+|||++|.++....... =..++|++... +..++.+.+
T Consensus 8 ~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~~ 46 (187)
T cd01124 8 PGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIENA 46 (187)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHHH
Confidence 7999999999887765422 24467776543 455555443
No 322
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.49 E-value=2.7 Score=45.48 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc---------------chhhHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ---------------SHETVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---------------~~~~~~~~~~~ 66 (707)
+|+||||||.++......+ -..++++.. +.+..++.+.+ +.++.+.... ....+.+..+.
T Consensus 272 ~G~GKt~l~~~f~~~~~~~--ge~~~y~s~--eEs~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~ 346 (484)
T TIGR02655 272 TGTGKTLLVSKFLENACAN--KERAILFAY--EESRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIK 346 (484)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEe--eCCHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHH
Confidence 7999999998888766443 244556544 44566666664 4555432210 00133445555
Q ss_pred HHHhcCCcEEEEEeCCC
Q 042869 67 ERLKKEPKILIILDDIW 83 (707)
Q Consensus 67 ~~l~~~kr~LlVlDdv~ 83 (707)
+.+...+.-.+|+|.+.
T Consensus 347 ~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 347 SEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHcCCCEEEEcCHH
Confidence 55544344567777764
No 323
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.45 E-value=0.6 Score=26.91 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=12.4
Q ss_pred CCCCcEEEcCCCchhhchHH
Q 042869 410 LKKLEILTLRGSNMQKLVEE 429 (707)
Q Consensus 410 l~~L~~L~l~~~~l~~lp~~ 429 (707)
+.+|++|++.+|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 324
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.45 E-value=0.6 Score=26.91 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=12.4
Q ss_pred CCCCcEEEcCCCchhhchHH
Q 042869 410 LKKLEILTLRGSNMQKLVEE 429 (707)
Q Consensus 410 l~~L~~L~l~~~~l~~lp~~ 429 (707)
+.+|++|++.+|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 325
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=86.38 E-value=7.8 Score=38.41 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHH
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
+++=.+|+|+++.. ..++.+.+.+-.-..++.+|++|.+.+ +...-..--..+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 45678999999855 456666655543344566777776644 4332112223555655 5555555554
No 326
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=1.5 Score=41.57 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|.|||-.|++|+|+.... | +.|-. .++.+.-. +.....+.++++--+..|-++|.||.
T Consensus 220 pgtgktl~aravanrtdac--f-----irvig----selvqkyv----------gegarmvrelf~martkkaciiffde 278 (435)
T KOG0729|consen 220 PGTGKTLCARAVANRTDAC--F-----IRVIG----SELVQKYV----------GEGARMVRELFEMARTKKACIIFFDE 278 (435)
T ss_pred CCCchhHHHHHHhcccCce--E-----Eeehh----HHHHHHHh----------hhhHHHHHHHHHHhcccceEEEEeec
Confidence 6999999999999876543 3 32211 11111110 11122344455544556789999999
Q ss_pred CCCc-------------c---cccccccccCCCCC--CeEEEEeeCCcccc
Q 042869 82 IWGS-------------L---DLEAIGIPFADNNS--GCKVLLTARSQDVL 114 (707)
Q Consensus 82 v~~~-------------~---~~~~l~~~l~~~~~--gs~iivTtr~~~v~ 114 (707)
++.. + ..-++...+..+.+ .-+|+..|.....+
T Consensus 279 idaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 279 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred cccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 8532 0 01123334444443 34777777665544
No 327
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.24 E-value=0.025 Score=52.11 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=45.9
Q ss_pred cCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcC
Q 042869 363 TGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDL 441 (707)
Q Consensus 363 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 441 (707)
-.++..++||++.+....+-..++.+..|..|+++.+.+.. |...+.+..+.++++..|...+.|.+.+.++.++.++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34555555666555555555555555555555555555544 44555555555555555555555655555555555555
Q ss_pred CCC
Q 042869 442 SNC 444 (707)
Q Consensus 442 ~~~ 444 (707)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 543
No 328
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=86.20 E-value=1.9 Score=39.43 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=30.8
Q ss_pred HHHHHhcCCcEEEEEeCCCCccc---ccccccccCCCCCCeEEEEeeCCccccccccCCcceEEe
Q 042869 65 LLERLKKEPKILIILDDIWGSLD---LEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFV 126 (707)
Q Consensus 65 ~~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l 126 (707)
+.+.+.. ++=++++|+-...-+ .+.+...+.....+..||++|.+..... .....+.+
T Consensus 109 laral~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~---~~d~~~~l 169 (178)
T cd03247 109 LARILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE---HMDKILFL 169 (178)
T ss_pred HHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH---hCCEEEEE
Confidence 4444554 578999999865422 1122222211123567888888866543 23444444
No 329
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=86.11 E-value=0.36 Score=40.73 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|+||||+|+++.......
T Consensus 8 PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 8 PGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp --HHHHHHHHHHHHHTT--
T ss_pred CccHHHHHHHHHHHHcCCc
Confidence 7999999999999876554
No 330
>PRK00625 shikimate kinase; Provisional
Probab=85.98 E-value=0.52 Score=42.85 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
|+|+||||+|+.+.+...
T Consensus 8 ~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999987754
No 331
>PRK06217 hypothetical protein; Validated
Probab=85.87 E-value=1.1 Score=41.28 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccCC--CcEEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLF--EKVISS 29 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F--~~~~wv 29 (707)
++|+||||+|+++....... +| |..+|.
T Consensus 9 ~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 9 ASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 47999999999999876432 33 446663
No 332
>PRK08149 ATP synthase SpaL; Validated
Probab=85.86 E-value=2.6 Score=44.16 Aligned_cols=79 Identities=11% Similarity=0.232 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec-CCcCHHHHHHHHHHHhch-------hhhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS-QTPQIKNIQGEIAEKIGL-------ELAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~-------~~~~~~~-----~~~~~~~~~~~ 68 (707)
.|+|||||++.++.... -+.++...+. +...+.++..++.+.... ....++. .....-.+.++
T Consensus 160 sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~ 235 (428)
T PRK08149 160 AGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEY 235 (428)
T ss_pred CCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHH
Confidence 59999999999987543 2333333343 334566676666654221 1111110 01112233444
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +||++|+++||+..
T Consensus 236 fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 236 FRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHcCCCEEEEccchHH
Confidence 43 47899999999954
No 333
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=85.83 E-value=3 Score=43.82 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
.|+|||||++.++..... +.++.+-+.+.. .+.++..+.+..-+. ....++.. ....-.+.++
T Consensus 167 sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 167 SGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred CCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999999875432 444445554443 455666555443211 00111100 1112234455
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+.+|+++||+..
T Consensus 243 frd~G~~Vll~~DslTr 259 (442)
T PRK08927 243 FRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHCCCcEEEEEeCcHH
Confidence 53 47899999999953
No 334
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=4.6 Score=44.02 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=66.2
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
.+|.|||.||+++++..... | +.+... ++.. . .-+.....+..+++.-.+...+.|++|
T Consensus 284 pPGtGKT~lAkava~~~~~~--f-----i~v~~~----~l~s----k------~vGesek~ir~~F~~A~~~~p~iiFiD 342 (494)
T COG0464 284 PPGTGKTLLAKAVALESRSR--F-----ISVKGS----ELLS----K------WVGESEKNIRELFEKARKLAPSIIFID 342 (494)
T ss_pred CCCCCHHHHHHHHHhhCCCe--E-----EEeeCH----HHhc----c------ccchHHHHHHHHHHHHHcCCCcEEEEE
Confidence 37999999999999955443 3 222211 1111 0 001122234444444444578999999
Q ss_pred CCCCccc-------------ccccccccCCCCCC-eEEEEeeCCc-ccccc----ccCCcceEEeecCChHHHHHHHHhh
Q 042869 81 DIWGSLD-------------LEAIGIPFADNNSG-CKVLLTARSQ-DVLSC----KMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 81 dv~~~~~-------------~~~l~~~l~~~~~g-s~iivTtr~~-~v~~~----~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
.++..-. ..++...+...... ..++|.+.++ ..... ...-...+.+..-+.++..+.|..+
T Consensus 343 EiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~ 422 (494)
T COG0464 343 EIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIH 422 (494)
T ss_pred chhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHH
Confidence 9964311 11222222212222 2344544443 33211 1123457888999999999999998
Q ss_pred hcC
Q 042869 142 TGD 144 (707)
Q Consensus 142 ~~~ 144 (707)
..+
T Consensus 423 ~~~ 425 (494)
T COG0464 423 LRD 425 (494)
T ss_pred hcc
Confidence 863
No 335
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=85.79 E-value=3.3 Score=39.44 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+||||+|+.+.....
T Consensus 8 sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 8 VAVGKSTTARVLQALLS 24 (220)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999998764
No 336
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.73 E-value=2.5 Score=45.16 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcc-hhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQS-HETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+|||||+.++....... -..++|++..+ +..++... ++.++....... ........+.+.+.+.+.-++|+|
T Consensus 103 pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVID 177 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLAKN--QMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEEENPQACVID 177 (454)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEEe
Confidence 6999999999987765432 23577776543 33333222 233332211100 011123444444444445678888
Q ss_pred CCCC
Q 042869 81 DIWG 84 (707)
Q Consensus 81 dv~~ 84 (707)
.+..
T Consensus 178 SIq~ 181 (454)
T TIGR00416 178 SIQT 181 (454)
T ss_pred cchh
Confidence 8753
No 337
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=85.58 E-value=1.9 Score=41.35 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 44 (707)
+|+|||++|.++......+ .=..+++++..++ ..++.+++
T Consensus 28 ~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~ 67 (226)
T PF06745_consen 28 PGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENM 67 (226)
T ss_dssp TTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHH
Confidence 6999999998766544322 0234677776544 45555554
No 338
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=85.54 E-value=4 Score=37.44 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCc-----ccccccccccCCCCCCeEEEEeeCCc
Q 042869 63 GRLLERLKKEPKILIILDDIWGS-----LDLEAIGIPFADNNSGCKVLLTARSQ 111 (707)
Q Consensus 63 ~~~~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~ 111 (707)
....+.+..++-=+||||.+-.. -+.+++...+.....+.-||+|-|+.
T Consensus 105 ~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 105 EEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 44455555666669999998543 23334444443344567899999985
No 339
>PRK09099 type III secretion system ATPase; Provisional
Probab=85.52 E-value=2.4 Score=44.67 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchh-------hhhcchh-----hHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLE-------LAEQSHE-----TVRAGRLLERL 69 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~~~~~~~l 69 (707)
.|+|||||++.+....... ..+++..-.+...+.++.+.+...-+.. ...++.. ....-.+.+++
T Consensus 172 sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyf 248 (441)
T PRK09099 172 AGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYF 248 (441)
T ss_pred CCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999998654321 2344444344445666666665432110 0111100 11122344555
Q ss_pred h-cCCcEEEEEeCCCC
Q 042869 70 K-KEPKILIILDDIWG 84 (707)
Q Consensus 70 ~-~~kr~LlVlDdv~~ 84 (707)
. +|+++|+++||+..
T Consensus 249 rd~G~~VLl~~DslTr 264 (441)
T PRK09099 249 RDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHcCCCEEEeccchhH
Confidence 3 47899999999854
No 340
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=85.46 E-value=2.4 Score=47.85 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc-----chhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ-----SHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||||.+++-....+ =..++|++..+.++.. .+++++.+...- ...+.....+...+.+++--|
T Consensus 69 ~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~L 141 (790)
T PRK09519 69 ESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141 (790)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeE
Confidence 6999999997766543322 3567899887777743 566666542211 112223333333344456779
Q ss_pred EEEeCCC
Q 042869 77 IILDDIW 83 (707)
Q Consensus 77 lVlDdv~ 83 (707)
||+|.+.
T Consensus 142 VVIDSI~ 148 (790)
T PRK09519 142 VVIDSVA 148 (790)
T ss_pred EEEcchh
Confidence 9999986
No 341
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=85.34 E-value=3.5 Score=40.85 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK 47 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 47 (707)
+|+||||+|.++....... +=..++|+++.. +..++...+...
T Consensus 39 ~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 39 TGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 6999999999888765432 123577777655 445566665544
No 342
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=85.28 E-value=3.2 Score=40.45 Aligned_cols=19 Identities=37% Similarity=0.781 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
++|+||||+|+.+......
T Consensus 7 ~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 5899999999999987654
No 343
>PRK00889 adenylylsulfate kinase; Provisional
Probab=85.23 E-value=2.9 Score=38.19 Aligned_cols=19 Identities=32% Similarity=0.732 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
++|+||||+|+.+......
T Consensus 12 ~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 12 LSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4799999999999987653
No 344
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=85.18 E-value=3.8 Score=39.32 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQ 41 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 41 (707)
||+||||+|..+......+ .+ .+.-++...+.+.....
T Consensus 11 GGvGKTT~a~nLA~~la~~-G~-~VlliD~DpQ~s~~~w~ 48 (231)
T PRK13849 11 GGAGKTTALMGLCAALASD-GK-RVALFEADENRPLTRWK 48 (231)
T ss_pred CCccHHHHHHHHHHHHHhC-CC-cEEEEeCCCCCCHHHHH
Confidence 8999999999988876644 22 34556666665554443
No 345
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.16 E-value=1.7 Score=37.90 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQG 42 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 42 (707)
+|+|||++|+.++..... ...-+.++...+..++..
T Consensus 8 ~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 8 PGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp SSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHC
T ss_pred CCCCHHHHHHHHHHHhhc-----ceEEEEecccccccccee
Confidence 699999999999987622 133356777777776654
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.14 E-value=2.4 Score=44.06 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+||||+|..++........+ .+..++... .....+.++..++.++.+..... ....+.+.+.+...=+||+|
T Consensus 232 tGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~----~~~~l~~~l~~~~~D~VLID 306 (432)
T PRK12724 232 TGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK----DIKKFKETLARDGSELILID 306 (432)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehH----HHHHHHHHHHhCCCCEEEEe
Confidence 6999999999998765332122 222333222 11223344444455554432211 12334444433233468899
Q ss_pred CC
Q 042869 81 DI 82 (707)
Q Consensus 81 dv 82 (707)
-.
T Consensus 307 Ta 308 (432)
T PRK12724 307 TA 308 (432)
T ss_pred CC
Confidence 54
No 347
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=85.07 E-value=0.97 Score=39.56 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLE 51 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 51 (707)
+|+||||+|+.+.++..-. .+ +.-.+.++|++..+.+
T Consensus 9 pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 9 PGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred CCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 7999999999999987654 11 2335667777766554
No 348
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=85.06 E-value=3.5 Score=41.53 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec-CCcCHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS-QTPQIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
.|.|||||++.+...... +..+..-+. +...+.++..+....-+. ....++.. ....-.+.++
T Consensus 78 sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEy 153 (326)
T cd01136 78 SGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEY 153 (326)
T ss_pred CCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999988875432 222333333 344566666666543211 01111100 1112223444
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +||.+|+++||+..
T Consensus 154 fr~~g~~Vll~~Dsltr 170 (326)
T cd01136 154 FRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHcCCCeEEEeccchH
Confidence 43 47899999999853
No 349
>PRK06936 type III secretion system ATPase; Provisional
Probab=85.00 E-value=2.8 Score=43.93 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
.|+|||||.+.+++... -+.++.+-+.+.. .+.++.++.+..-+. ....++.. ....-.+.++
T Consensus 171 sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEy 246 (439)
T PRK06936 171 AGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEY 246 (439)
T ss_pred CCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999988643 3566666665543 455655544332110 00111100 0112234455
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +||++|+++||+..
T Consensus 247 frd~G~~Vll~~DslTR 263 (439)
T PRK06936 247 FRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHcCCCEEEeccchhH
Confidence 53 47899999999853
No 350
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=84.86 E-value=1.8 Score=45.61 Aligned_cols=78 Identities=29% Similarity=0.312 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHHHHHHHHHHhchhhhhcchhhH---HHHHHHHHHhcCCcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGLELAEQSHETV---RAGRLLERLKKEPKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~~~l~~~kr~Ll 77 (707)
+|+||||.|..++.....+ .+ .+.-+++.. .....+-++.+.++++.+........+ ......+.... .-+|
T Consensus 104 ~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~--~DvV 179 (437)
T PRK00771 104 QGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKK--ADVI 179 (437)
T ss_pred CCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhc--CCEE
Confidence 7999999999999876543 22 233343322 112344556666666554322211111 12223333322 2567
Q ss_pred EEeCCC
Q 042869 78 ILDDIW 83 (707)
Q Consensus 78 VlDdv~ 83 (707)
|+|...
T Consensus 180 IIDTAG 185 (437)
T PRK00771 180 IVDTAG 185 (437)
T ss_pred EEECCC
Confidence 888774
No 351
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.73 E-value=0.51 Score=27.26 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=9.8
Q ss_pred CCCcEEEEccCcchhh
Q 042869 647 QQLQSVKVSSCQNMEV 662 (707)
Q Consensus 647 ~~L~~L~i~~C~~l~~ 662 (707)
++|++|+|++|+++.+
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5566666666666554
No 352
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=84.48 E-value=0.74 Score=34.39 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+||||+|+.+.+..
T Consensus 8 ~gsGKst~~~~l~~~l 23 (69)
T cd02019 8 SGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999875
No 353
>PTZ00301 uridine kinase; Provisional
Probab=84.48 E-value=1.6 Score=41.10 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+|+.+.....
T Consensus 12 SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 12 SGSGKSSLSTNIVSELM 28 (210)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 69999999999987654
No 354
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=84.43 E-value=3.1 Score=43.69 Aligned_cols=81 Identities=21% Similarity=0.361 Sum_probs=43.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRLLERL 69 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~~~~l 69 (707)
.|+|||||++.++...... ..++...-.+.....++.++.+..-+.. ....+. .......+.+++
T Consensus 165 sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 165 SGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred CCCChHHHHHHHhccCCCC---eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5999999999998765331 2233332223356666766555442111 011110 011122233444
Q ss_pred h-cCCcEEEEEeCCCCc
Q 042869 70 K-KEPKILIILDDIWGS 85 (707)
Q Consensus 70 ~-~~kr~LlVlDdv~~~ 85 (707)
. +|+.+||++||+..-
T Consensus 242 r~~G~~VLlilDslTr~ 258 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHcCCcEEEEecchHHH
Confidence 3 478999999998644
No 355
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.18 E-value=3.2 Score=44.46 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+||||++.++......+.....+..++.... ....+-++...+.++....... .........+.+. +.-+|++|
T Consensus 359 tGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~-d~~~L~~aL~~l~--~~DLVLID 435 (559)
T PRK12727 359 TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD-SAESLLDLLERLR--DYKLVLID 435 (559)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC-cHHHHHHHHHHhc--cCCEEEec
Confidence 699999999998876544322234445544321 1222333333344443332222 1222334444443 35688899
Q ss_pred CCCC
Q 042869 81 DIWG 84 (707)
Q Consensus 81 dv~~ 84 (707)
....
T Consensus 436 TaG~ 439 (559)
T PRK12727 436 TAGM 439 (559)
T ss_pred CCCc
Confidence 8753
No 356
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=84.16 E-value=0.67 Score=42.65 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
|=|+||||||+.+.++...
T Consensus 12 ~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 12 MIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccccCHHHHHHHHHHHhCC
Confidence 4599999999999988764
No 357
>PF13245 AAA_19: Part of AAA domain
Probab=84.12 E-value=1.9 Score=32.84 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=11.0
Q ss_pred CCCcHH-HHHHHHHHHh
Q 042869 2 GGIGKT-TLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKT-tLa~~v~~~~ 17 (707)
+|.||| |+++.+..-.
T Consensus 19 pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELL 35 (76)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 799999 5555555544
No 358
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.03 E-value=0.74 Score=40.36 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 47999999999998654
No 359
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=83.88 E-value=8 Score=44.72 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||++|+.+.+...
T Consensus 356 pG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 356 PGVGKTSLGKSIAKALN 372 (775)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999998764
No 360
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=83.75 E-value=3.1 Score=44.11 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCcE-EEEEecCCc-CHHHHHHHHHHHhchh-------hhhcchhhH-----HHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEKV-ISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSHETV-----RAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~~~ 66 (707)
.|+|||||| ..+.+.. .-+.+ +++-+.+.. .+.++.+.+.+.-..+ ...++.... ..-.+.
T Consensus 150 ~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiA 225 (485)
T CHL00059 150 RQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 225 (485)
T ss_pred CCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHH
Confidence 599999996 4555542 24544 667676544 5667777766532110 111110000 112234
Q ss_pred HHHh-cCCcEEEEEeCCCCc
Q 042869 67 ERLK-KEPKILIILDDIWGS 85 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~~ 85 (707)
+++. +|+++|+|+||+...
T Consensus 226 Eyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 226 EYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHcCCCEEEEEcChhHH
Confidence 4443 468999999999643
No 361
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=83.75 E-value=4.2 Score=36.79 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcC-CcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKE-PKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-kr~LlVlD 80 (707)
+|+|||++|.++... ....++++.-.+.++. ++.+.|.+..... +..-...+....+.+.+... +.-.+++|
T Consensus 8 ~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~~~VLID 80 (169)
T cd00544 8 ARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELDPGDVVLID 80 (169)
T ss_pred CCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCCCEEEEE
Confidence 589999999988754 1235667766666654 3455444422111 11110111122333333221 23379999
Q ss_pred CCC
Q 042869 81 DIW 83 (707)
Q Consensus 81 dv~ 83 (707)
.+.
T Consensus 81 clt 83 (169)
T cd00544 81 CLT 83 (169)
T ss_pred cHh
Confidence 973
No 362
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=83.62 E-value=4.3 Score=39.27 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
.||+|||+||..++-...
T Consensus 9 ~~G~GKS~lal~la~~va 26 (239)
T cd01125 9 PGGTGKSSLLLVLALAMA 26 (239)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 389999999998887544
No 363
>PRK06762 hypothetical protein; Provisional
Probab=83.54 E-value=0.78 Score=41.51 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998775
No 364
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.54 E-value=1.2 Score=41.77 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHH-HHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIK-NIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
.|+||||+++.+....... ....++. +..+.... .-...++.+-.. ... .......+...+.. ..=.|++|
T Consensus 10 tGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v--g~~--~~~~~~~i~~aLr~-~pd~ii~g 81 (198)
T cd01131 10 TGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV--GLD--TLSFENALKAALRQ-DPDVILVG 81 (198)
T ss_pred CCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc--CCC--ccCHHHHHHHHhcC-CcCEEEEc
Confidence 5999999999888765432 3333332 12111100 000011111000 000 11122334444544 35699999
Q ss_pred CCCCcccccccccccCCCCCCeEEEEeeCCc
Q 042869 81 DIWGSLDLEAIGIPFADNNSGCKVLLTARSQ 111 (707)
Q Consensus 81 dv~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 111 (707)
++.+.+.+...... ...|..++.|+-..
T Consensus 82 Eird~e~~~~~l~~---a~~G~~v~~t~Ha~ 109 (198)
T cd01131 82 EMRDLETIRLALTA---AETGHLVMSTLHTN 109 (198)
T ss_pred CCCCHHHHHHHHHH---HHcCCEEEEEecCC
Confidence 99877654432222 22355555554433
No 365
>PRK05922 type III secretion system ATPase; Validated
Probab=83.52 E-value=4.2 Score=42.68 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~~~~ 68 (707)
.|+|||||++.+..... .+....+-+.+. ....+.+.+........ ...++. .....-.+.++
T Consensus 166 nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEy 241 (434)
T PRK05922 166 PGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEY 241 (434)
T ss_pred CCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999986532 233333333332 23445555444332111 000000 01122234555
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 242 frd~G~~VLl~~DslTR 258 (434)
T PRK05922 242 FRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHcCCCEEEeccchhH
Confidence 53 47899999999953
No 366
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.42 E-value=1.3 Score=43.40 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|+|||+|.++++....+|
T Consensus 186 PGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 186 PGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred CCCChhHHHHHHHHhheee
Confidence 7999999999999987664
No 367
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.35 E-value=1.6 Score=43.84 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=28.2
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGE 43 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 43 (707)
.||+||||+|.+..-..... ...+.-|+.....++.++...
T Consensus 10 KGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred CCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 49999999999876665554 244666666666666665544
No 368
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=3 Score=44.72 Aligned_cols=142 Identities=18% Similarity=0.288 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|.|||-||++|+|.-... |++|-.+ +++..- - +..+..+++++++-+....+.|.||.
T Consensus 554 PGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY----V------GESErAVR~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY----V------GESERAVRQVFQRARASAPCVIFFDE 612 (802)
T ss_pred CCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH----h------hhHHHHHHHHHHHhhcCCCeEEEecc
Confidence 7999999999999976554 3444433 111111 1 11233456677766666799999999
Q ss_pred CCCc-------cc------ccccccccCC--CCCCeEEEEeeCCcccccc----ccCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGS-------LD------LEAIGIPFAD--NNSGCKVLLTARSQDVLSC----KMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~-------~~------~~~l~~~l~~--~~~gs~iivTtr~~~v~~~----~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
++.. .. ..++...+.. ...|--||-.|....+... ...-+...-|+.-+.+|-..+++...
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 9643 11 2223333322 2345556656665555421 12234566777788888888888776
Q ss_pred cC--CC--CCchhHHHHHHHHHHcCCcc
Q 042869 143 GD--CR--ENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 143 ~~--~~--~~~~~~~~~~~i~~~c~g~P 166 (707)
-. .. ..-++++++.. .+|.|.-
T Consensus 693 kn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 693 KNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred ccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 52 11 22234444433 3566654
No 369
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=83.33 E-value=2.9 Score=43.78 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLERL 69 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~l 69 (707)
.|+|||||++.+...... ...++...-.+...+.++.++.+..-+. ....++.. ....-.+.+++
T Consensus 149 sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 149 SGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred CCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999999888865432 2223332223334455666654433211 01111100 01122345555
Q ss_pred h-cCCcEEEEEeCCCC
Q 042869 70 K-KEPKILIILDDIWG 84 (707)
Q Consensus 70 ~-~~kr~LlVlDdv~~ 84 (707)
. +|+++|+++||+..
T Consensus 226 rd~G~~Vll~~DslTr 241 (418)
T TIGR03498 226 RDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHcCCCEEEeccchhH
Confidence 3 47899999999854
No 370
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=83.29 E-value=1.1 Score=40.53 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQ 36 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 36 (707)
.|+|||.+|+.+...... ......+-++++.-..
T Consensus 12 sGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 12 SGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp TTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred CCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 599999999999987763 1245566666665333
No 371
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=83.25 E-value=2.4 Score=38.88 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEE---ecCCcCHHHH------HHHHHHHhchhhhhc------chhhHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSR---VSQTPQIKNI------QGEIAEKIGLELAEQ------SHETVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~~~~------~~~~~~~~~~~ 66 (707)
.|.|||||++.++..... ....+++. +.. .+.... ..++++.++...... +..+.....+.
T Consensus 34 nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~la 109 (180)
T cd03214 34 NGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLA 109 (180)
T ss_pred CCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 599999999999875432 33434332 211 122121 122445544322111 11122233345
Q ss_pred HHHhcCCcEEEEEeCCCCcc---cccccccccCCC-CC-CeEEEEeeCCcccc
Q 042869 67 ERLKKEPKILIILDDIWGSL---DLEAIGIPFADN-NS-GCKVLLTARSQDVL 114 (707)
Q Consensus 67 ~~l~~~kr~LlVlDdv~~~~---~~~~l~~~l~~~-~~-gs~iivTtr~~~v~ 114 (707)
+.+.. +.-++++|+-...- ..+.+...+... .. |..||++|.+...+
T Consensus 110 ral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 110 RALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 55555 57899999976432 222222222211 22 56788888876543
No 372
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=83.21 E-value=3.9 Score=36.89 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHHHHHhhhc---cCCCc---EEEEEecCCcCH--HHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCC
Q 042869 2 GGIGKTTLVKEVGRQVKEN---NLFEK---VISSRVSQTPQI--KNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~---~~F~~---~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~k 73 (707)
.|.|||||++.+....... -.++. +.+ +.+.... ..+.+.+.-. ....-+..+.....+.+.+.. +
T Consensus 36 nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~-~ 109 (166)
T cd03223 36 SGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFARLLLH-K 109 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHc-C
Confidence 5999999999998754321 01111 222 2222211 1233333210 111111122233445555555 5
Q ss_pred cEEEEEeCCCCccc---ccccccccCCCCCCeEEEEeeCCcccc
Q 042869 74 KILIILDDIWGSLD---LEAIGIPFADNNSGCKVLLTARSQDVL 114 (707)
Q Consensus 74 r~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtr~~~v~ 114 (707)
.=++++|+--..-+ ...+...+... +..||++|.+....
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 67889998754322 22222222221 35678888776553
No 373
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=83.21 E-value=3.6 Score=43.11 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=42.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhch-------hhhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGL-------ELAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~-----~~~~~~~~~~~ 68 (707)
.|+|||||++.+..... .+..+...+.+. ..+.++.+++...-.. ....++. .....-.+.++
T Consensus 146 sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEy 221 (411)
T TIGR03496 146 SGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEY 221 (411)
T ss_pred CCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999988886543 233333444443 3455666655443110 1111110 01112234455
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 222 fr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 222 FRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHCCCCEEEEEeChHH
Confidence 53 47899999999853
No 374
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=83.14 E-value=2.7 Score=42.19 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh------------hhhcchhhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE------------LAEQSHETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~~~~~~ 68 (707)
+|+|||.+.+.+.++.... |=...+|.-+.+.. --.++..+|.+.--.+ ...+-...--.-.+.++
T Consensus 156 AGVGKTVl~~ELI~Nia~~-h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEy 234 (468)
T COG0055 156 AGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEY 234 (468)
T ss_pred CCccceeeHHHHHHHHHHH-cCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHH
Confidence 5899999999999988763 45668888776543 4567888887652111 00000000011234444
Q ss_pred Hh--cCCcEEEEEeCCCC
Q 042869 69 LK--KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~--~~kr~LlVlDdv~~ 84 (707)
++ .++.+|+.+||+..
T Consensus 235 fRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 235 FRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhcccCCeEEEEehhhhH
Confidence 44 25789999999963
No 375
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=83.12 E-value=3.9 Score=36.73 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 36999999999998765
No 376
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.07 E-value=0.79 Score=38.65 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.1
Q ss_pred CCcHHHHHHHHHHHhhh
Q 042869 3 GIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 3 GiGKTtLa~~v~~~~~~ 19 (707)
|+||||++|.++.....
T Consensus 25 GaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 25 GAGKTTFVRGLARALGI 41 (123)
T ss_dssp TSSHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 89999999999986543
No 377
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.87 E-value=2.4 Score=48.53 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=59.1
Q ss_pred CcEEEEEeCCCCcc---ccccc----ccccCCCCCCeEEEEeeCCccccccccCCcce--EEeecCChHHHHHHHHhhhc
Q 042869 73 PKILIILDDIWGSL---DLEAI----GIPFADNNSGCKVLLTARSQDVLSCKMDCQQN--FFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 73 kr~LlVlDdv~~~~---~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~--~~l~~L~~~~a~~Lf~~~~~ 143 (707)
.+-|+++|.....- +...+ ...+. ..|+.+|+||-+.++.......... +.|. ++.+ ... |.-+.-
T Consensus 402 ~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p~Ykl~ 476 (771)
T TIGR01069 402 ENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-PTYKLL 476 (771)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-eEEEEC
Confidence 57999999987542 22222 12221 2478899999997764322222111 1221 1111 000 000110
Q ss_pred CCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042869 144 DCRENGELKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLERT 194 (707)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~ 194 (707)
...+. ...|-.|++++ |+|-.+..-|..+.+.......+++..+...
T Consensus 477 ~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 477 KGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSAL 523 (771)
T ss_pred CCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11111 23477777776 7888888888877655555666666665543
No 378
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=82.84 E-value=16 Score=40.12 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHHHHHhh---hcc---CCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHh----c
Q 042869 2 GGIGKTTLVKEVGRQVK---ENN---LFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLK----K 71 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~---~~~---~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~----~ 71 (707)
+|+|||..+..|.+... .++ .|+.+ .|+.-.-..+.++...|..++.+...... ..+..+..++. .
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yv-eINgm~l~~~~~~Y~~I~~~lsg~~~~~~---~al~~L~~~f~~~k~~ 506 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFDYV-EINGLRLASPREIYEKIWEALSGERVTWD---AALEALNFRFTVPKPK 506 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCccEE-EEcceeecCHHHHHHHHHHhcccCcccHH---HHHHHHHHhhccCCCC
Confidence 69999999999998554 122 34332 34444555789999999999877543222 22333333333 2
Q ss_pred CCcEEEEEeCCCCccc--ccccccccC-CCCCCeEEEEeeCC
Q 042869 72 EPKILIILDDIWGSLD--LEAIGIPFA-DNNSGCKVLLTARS 110 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iivTtr~ 110 (707)
.+.++|++|+++..-. -+-+-.-|. +..++||++|.+-.
T Consensus 507 ~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred CCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 3578999999864411 111222222 34467887775543
No 379
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=82.73 E-value=3.4 Score=43.93 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCc-EEEEEecCCc-CHHHHHHHHHHHhch------hhhhcchhh-----HHHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEK-VISSRVSQTP-QIKNIQGEIAEKIGL------ELAEQSHET-----VRAGRLLE 67 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~------~~~~~~~~~-----~~~~~~~~ 67 (707)
.|+||||+| ..+.++. .-+. ++++-+.+.. .+.++.+.+.+.-.. ....++... -..-.+.+
T Consensus 152 ~gtGKT~lal~~I~~q~----~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~tiAE 227 (507)
T PRK07165 152 RQTGKTHIALNTIINQK----NTNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHAE 227 (507)
T ss_pred CCCCccHHHHHHHHHhc----CCCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 589999996 5566552 2344 3667776655 466677766653211 001111111 11223455
Q ss_pred HHhcCCcEEEEEeCCCC
Q 042869 68 RLKKEPKILIILDDIWG 84 (707)
Q Consensus 68 ~l~~~kr~LlVlDdv~~ 84 (707)
++...+.+|+|+||+..
T Consensus 228 yfrd~~dVLlv~DdLTr 244 (507)
T PRK07165 228 NISYNDDVLIVFDDLTK 244 (507)
T ss_pred HHHhcCceEEEEcChHH
Confidence 55544899999999864
No 380
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=82.58 E-value=3 Score=43.79 Aligned_cols=79 Identities=10% Similarity=0.178 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
.|+|||||++.+.+... .+..++..+.+. ..+.+++.+....-.. ....++.. ....-.+.++
T Consensus 164 sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEy 239 (433)
T PRK07594 164 PGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF 239 (433)
T ss_pred CCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998886543 344444444443 3444655654331100 00000000 0112234455
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 240 frd~G~~VLl~~Dsltr 256 (433)
T PRK07594 240 FRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHCCCcEEEEEeCHHH
Confidence 53 47899999999953
No 381
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=82.55 E-value=3.6 Score=40.41 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLE 51 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 51 (707)
+|+|||++|.++....... ...++||..++ +..++.+.+.+ ++.+
T Consensus 32 pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e--~~~~l~~~~~~-~g~d 76 (260)
T COG0467 32 PGTGKTIFALQFLYEGARE--GEPVLYVSTEE--SPEELLENARS-FGWD 76 (260)
T ss_pred CCCcHHHHHHHHHHHHHhc--CCcEEEEEecC--CHHHHHHHHHH-cCCC
Confidence 6999999999998877665 78899988765 34555555444 4443
No 382
>PRK08233 hypothetical protein; Provisional
Probab=82.52 E-value=0.85 Score=41.97 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
.+|+||||+|+.++....
T Consensus 11 ~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 379999999999997653
No 383
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=82.30 E-value=1.3 Score=43.58 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=30.2
Q ss_pred HHHHHhcCCcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccc
Q 042869 65 LLERLKKEPKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDV 113 (707)
Q Consensus 65 ~~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 113 (707)
+...+.....=++++|.+...+.+..+...+ ..|..||+||-+..+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 3333333457899999998776666554444 247778888876555
No 384
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=82.27 E-value=1.9 Score=40.46 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELA 53 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 53 (707)
||+||||+|..+......++-|+. .=|+....+++ .++++.+.+
T Consensus 9 GG~GKTtiaalll~~l~~~~~~~V-LvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 9 GGVGKTTIAALLLKRLLSKGGYNV-LVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred CCccHHHHHHHHHHHHHhcCCceE-EEEeCCCCCCh-------HHhcCCCCC
Confidence 899999999987777666543443 33454444443 455666553
No 385
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=81.97 E-value=2.1 Score=39.76 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT 34 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 34 (707)
-||+||||+|..+......+ .+ .++-++....
T Consensus 7 kGG~GKTt~a~~la~~la~~-g~-~VlliD~D~~ 38 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARK-GK-KVLLIDLDPQ 38 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TS--EEEEEESTT
T ss_pred CCCccHHHHHHHHHhccccc-cc-cccccccCcc
Confidence 39999999999999877663 23 3444555433
No 386
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=81.95 E-value=5.4 Score=36.69 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+|+.+.....
T Consensus 27 ~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 27 SGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999998764
No 387
>PRK13976 thymidylate kinase; Provisional
Probab=81.76 E-value=5.3 Score=37.60 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
-|+||||+|+.++.....+
T Consensus 9 DGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 9 DGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 5999999999999887653
No 388
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=81.66 E-value=3.7 Score=44.07 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCcE-EEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhh-----HHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEKV-ISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHET-----VRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~~~~~~ 66 (707)
.|+|||||| ..+.+.. .-+.+ +++-+.+.. .+.++.+++.+.-.. ....++... -..-.+.
T Consensus 171 ~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiA 246 (502)
T PRK09281 171 RQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMG 246 (502)
T ss_pred CCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 599999995 5555432 24553 677776654 456777766553211 001111000 0122234
Q ss_pred HHHh-cCCcEEEEEeCCCCc
Q 042869 67 ERLK-KEPKILIILDDIWGS 85 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~~ 85 (707)
+++. +|+++|+|+||+..-
T Consensus 247 Eyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 247 EYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHcCCCEEEEecCchHH
Confidence 4443 368999999999643
No 389
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=81.54 E-value=1.2 Score=42.49 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=18.5
Q ss_pred CCCCcHHHHHHHHHHHhhhcc
Q 042869 1 MGGIGKTTLVKEVGRQVKENN 21 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~ 21 (707)
|+|+||||+.+.++.+...++
T Consensus 27 MAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred cCCCCchhHHHHHHHHHhhcc
Confidence 899999999999998877653
No 390
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=81.32 E-value=1.3 Score=42.69 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
++|+||||+++.+.+.....
T Consensus 4 paGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999877654
No 391
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=81.30 E-value=1.5 Score=36.22 Aligned_cols=19 Identities=42% Similarity=0.732 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|+|||++|+.++.+....
T Consensus 7 ~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 7 PGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 6999999999988876543
No 392
>PHA02518 ParA-like protein; Provisional
Probab=81.29 E-value=2.5 Score=39.96 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKN 39 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 39 (707)
||+||||+|..+......+ . ..+.-++...+.+...
T Consensus 10 GGvGKTT~a~~la~~la~~-g-~~vlliD~D~q~~~~~ 45 (211)
T PHA02518 10 GGAGKTTVATNLASWLHAD-G-HKVLLVDLDPQGSSTD 45 (211)
T ss_pred CCCCHHHHHHHHHHHHHhC-C-CeEEEEeCCCCCChHH
Confidence 8999999999888766533 1 2355566665555444
No 393
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=81.05 E-value=1.4 Score=45.31 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|.|||.|.-.+|+...++.. ......++..++-+.+.... ...+.+..+.+.+.+ +..+|.||.
T Consensus 71 vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~----~~~~~l~~va~~l~~-~~~lLcfDE 135 (362)
T PF03969_consen 71 VGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLR----GQDDPLPQVADELAK-ESRLLCFDE 135 (362)
T ss_pred CCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHh----CCCccHHHHHHHHHh-cCCEEEEee
Confidence 489999999999998766311 01122233333333332222 122335556666665 456999999
Q ss_pred CCCccccc-----ccccccCCCCCCeEEEEeeCCccc
Q 042869 82 IWGSLDLE-----AIGIPFADNNSGCKVLLTARSQDV 113 (707)
Q Consensus 82 v~~~~~~~-----~l~~~l~~~~~gs~iivTtr~~~v 113 (707)
+.-.+--+ .+...+ +..|. |||+|.|...
T Consensus 136 F~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 136 FQVTDIADAMILKRLFEAL--FKRGV-VLVATSNRPP 169 (362)
T ss_pred eeccchhHHHHHHHHHHHH--HHCCC-EEEecCCCCh
Confidence 76432222 222222 23344 6666666543
No 394
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=81.04 E-value=2.1 Score=43.07 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQ 41 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 41 (707)
||+||||+|.+.+-....+. ..+.-++.....++.+++
T Consensus 10 GGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 89999999988877665431 224444444444444443
No 395
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.00 E-value=6.6 Score=42.57 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCC-CcEEEEEecCCcCHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLF-EKVISSRVSQTPQIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 44 (707)
+|+||||+|.++...-..+ + ..+++|+.. .+..++.+++
T Consensus 30 pGsGKT~la~qfl~~g~~~--~ge~~lyvs~e--E~~~~l~~~~ 69 (484)
T TIGR02655 30 SGTGKTLFSIQFLYNGIIH--FDEPGVFVTFE--ESPQDIIKNA 69 (484)
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCCEEEEEEe--cCHHHHHHHH
Confidence 7999999998886543222 3 457787775 3455555554
No 396
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=80.98 E-value=47 Score=34.72 Aligned_cols=112 Identities=11% Similarity=0.124 Sum_probs=71.0
Q ss_pred cEEEEEeCCCCc-----------ccccccccccCCCCCCeEEEEeeCCccccc-----cccCCcceEEeecCChHHHHHH
Q 042869 74 KILIILDDIWGS-----------LDLEAIGIPFADNNSGCKVLLTARSQDVLS-----CKMDCQQNFFVDVLNEKEAWSL 137 (707)
Q Consensus 74 r~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~~~~~~~~~~l~~L~~~~a~~L 137 (707)
|=+||+|+.... .+|.. .+... +=-.||.+|-+..... ........+.+...+.+-|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa---~Lv~~-nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAA---SLVQN-NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHH---HHHhc-CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999998543 23443 33222 3345777777755442 1123346788999999999999
Q ss_pred HHhhhcCCCCC-------------------chhHHHHHHHHHHcCCcchHHHHHHHHhc-cCChhH-HHHHHH
Q 042869 138 FKKMTGDCREN-------------------GELKSVAAEIVKECAGLPIAIVPIAKALK-NKSPYE-WRNALR 189 (707)
Q Consensus 138 f~~~~~~~~~~-------------------~~~~~~~~~i~~~c~g~Plai~~~~~~l~-~~~~~~-w~~~l~ 189 (707)
...+....... ....+-....++..||=-.-+..+++.++ +.++.+ .+++.+
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88877532110 12333467788999999999999999997 565543 344433
No 397
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=80.97 E-value=2.3 Score=38.45 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHhcCCcEEEEEeCC----CCcccccccccccC-CCCCCeEEEEeeCCccccc
Q 042869 64 RLLERLKKEPKILIILDDI----WGSLDLEAIGIPFA-DNNSGCKVLLTARSQDVLS 115 (707)
Q Consensus 64 ~~~~~l~~~kr~LlVlDdv----~~~~~~~~l~~~l~-~~~~gs~iivTtr~~~v~~ 115 (707)
.+.+.+.. +.-+++=|.= +.+-.|+-+ ..|. -+..|..||++|-+.++..
T Consensus 147 aIARAiV~-~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 147 AIARAIVN-QPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHcc-CCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHH
Confidence 34445544 5777777763 222234422 2222 2345999999999988764
No 398
>PTZ00088 adenylate kinase 1; Provisional
Probab=80.95 E-value=1.9 Score=41.29 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 14 ~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 14 APGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 489999999999988654
No 399
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=80.84 E-value=3.3 Score=43.81 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHH------Hhch-hhhhcch-----hhHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAE------KIGL-ELAEQSH-----ETVRAGRLLERL 69 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~------~l~~-~~~~~~~-----~~~~~~~~~~~l 69 (707)
.|+|||||++.+....... ..++++.-.+...+.++..+.+. .+.. ....++. .....-.+.+++
T Consensus 167 sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyf 243 (438)
T PRK07721 167 SGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYF 243 (438)
T ss_pred CCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999888754332 23444432333345544433221 1111 0011110 011122344455
Q ss_pred h-cCCcEEEEEeCCC
Q 042869 70 K-KEPKILIILDDIW 83 (707)
Q Consensus 70 ~-~~kr~LlVlDdv~ 83 (707)
. +|+++|+++||+.
T Consensus 244 r~~g~~Vll~~Dslt 258 (438)
T PRK07721 244 RDQGLNVMLMMDSVT 258 (438)
T ss_pred HHCCCcEEEEEeChH
Confidence 3 4789999999985
No 400
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.83 E-value=6.6 Score=40.30 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=46.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec-CCcCHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS-QTPQIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~~~~ 68 (707)
+|+|||||.-.+++.. .+|.++-.=+. ...-+.+++++.+..-+.. ..+++. .......+.++
T Consensus 172 sGVGKStLLgMiar~t----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEy 247 (441)
T COG1157 172 SGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEY 247 (441)
T ss_pred CCCcHHHHHHHHhccc----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999998743 36665443333 3345777777666443211 111111 01122345555
Q ss_pred Hh-cCCcEEEEEeCCC
Q 042869 69 LK-KEPKILIILDDIW 83 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~ 83 (707)
++ +||++|+++|-+-
T Consensus 248 FRDqG~~VLL~mDSlT 263 (441)
T COG1157 248 FRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHhCCCeEEEEeecHH
Confidence 55 4799999999984
No 401
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.82 E-value=3.6 Score=37.40 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHHhcCCcEEEEEeCCCCccc---ccccccccCCCCCCeEEEEeeCCcccc
Q 042869 65 LLERLKKEPKILIILDDIWGSLD---LEAIGIPFADNNSGCKVLLTARSQDVL 114 (707)
Q Consensus 65 ~~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iivTtr~~~v~ 114 (707)
+.+.+.. +.=++++|+-...-+ .+.+...+.....+..||++|.+.+..
T Consensus 107 la~al~~-~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARALLR-DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 4444544 567999999764321 222222221112346788888886654
No 402
>PRK00131 aroK shikimate kinase; Reviewed
Probab=80.77 E-value=1.1 Score=40.84 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.++....
T Consensus 12 ~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 589999999999998763
No 403
>PLN02924 thymidylate kinase
Probab=80.73 E-value=7.3 Score=37.01 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAE 46 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 46 (707)
-|+||||+|+.++.....+ .+....+-.........+.+++++.
T Consensus 25 DGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 25 DRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 5999999999999988764 3444333211212234455555554
No 404
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=80.62 E-value=4.9 Score=38.58 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhc
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIG 49 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 49 (707)
+|+||||+|.++......+ -..++|++... +..++.+. +++++
T Consensus 29 ~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 29 PGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 6999999999876543322 34677877643 34444433 34444
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=80.57 E-value=6.2 Score=41.62 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||.|..++....
T Consensus 108 ~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 108 QGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 79999999988887654
No 406
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=80.55 E-value=1.2 Score=36.44 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
||+||||+|..+......
T Consensus 9 gG~Gkst~~~~la~~~~~ 26 (104)
T cd02042 9 GGVGKTTTAVNLAAALAR 26 (104)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 899999999988876653
No 407
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=80.54 E-value=3.2 Score=39.18 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNI 40 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 40 (707)
||.||||++..++.....+ =..+.-++......+...
T Consensus 11 GGaGKTT~~~~LAs~la~~--G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAAR--GARVALIDADPNQPLAKW 47 (231)
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEeCCCCCcHHHH
Confidence 8999999999999887654 234556666555555444
No 408
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=80.50 E-value=4.2 Score=43.69 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCcE-EEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhh-----HHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEKV-ISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHET-----VRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~~~~~~ 66 (707)
.|+|||||| ..+.+.. .-+.+ +++-+.+.. .+.++.+++.+.-.. ....++... -..-.+.
T Consensus 170 ~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiA 245 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMA 245 (501)
T ss_pred CCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 399999996 5666642 24563 777776654 567777777654211 011111000 1122234
Q ss_pred HHHh-cCCcEEEEEeCCCCc
Q 042869 67 ERLK-KEPKILIILDDIWGS 85 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~~ 85 (707)
+++. +|+++|||+||+...
T Consensus 246 Eyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 246 EYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHcCCCEEEEecchHHH
Confidence 4444 368999999999643
No 409
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=80.50 E-value=8.5 Score=37.25 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK 47 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 47 (707)
+|+|||++|.++..+..... =..++|++... +..++...++..
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHHH
Confidence 69999999998887665431 23456655443 566777776543
No 410
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=80.44 E-value=1.1 Score=39.59 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 7 ~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 7 VSGSGKSTVGKALAERL 23 (150)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 47999999999998763
No 411
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=80.35 E-value=6.1 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
||+||||+|..++.....
T Consensus 9 gG~GKTt~a~~LA~~la~ 26 (169)
T cd02037 9 GGVGKSTVAVNLALALAK 26 (169)
T ss_pred CcCChhHHHHHHHHHHHH
Confidence 899999999988886654
No 412
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=80.31 E-value=6.7 Score=41.12 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~~~~ 68 (707)
+|+|||+|+..+++... -+.++++-+.+.. ...++.+++.+.-..+ ...++. .....-.+.++
T Consensus 149 aGvgk~~L~~~ia~~~~----~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEy 224 (436)
T PRK02118 149 SGEPYNALLARIALQAE----ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEK 224 (436)
T ss_pred CCCCHHHHHHHHHHhhC----CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999887653 2567777776654 4566666665442111 011110 01122234555
Q ss_pred Hhc--CCcEEEEEeCCCC
Q 042869 69 LKK--EPKILIILDDIWG 84 (707)
Q Consensus 69 l~~--~kr~LlVlDdv~~ 84 (707)
+.. ++.+|+++||+..
T Consensus 225 frd~g~~~VLli~DdlTr 242 (436)
T PRK02118 225 FALEGKKKVLVLLTDMTN 242 (436)
T ss_pred HHhcCCCCEEEeccCchH
Confidence 542 3899999999964
No 413
>PRK13947 shikimate kinase; Provisional
Probab=80.22 E-value=1.2 Score=40.54 Aligned_cols=19 Identities=37% Similarity=0.399 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
|+|+||||+|+.+.+....
T Consensus 9 ~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 6899999999999987644
No 414
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=80.03 E-value=4.3 Score=43.42 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=44.6
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCcE-EEEEecCCc-CHHHHHHHHHHHhchh-------hhhcchhhH-----HHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEKV-ISSRVSQTP-QIKNIQGEIAEKIGLE-------LAEQSHETV-----RAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~~~ 66 (707)
+|+|||||| ..+.+.. .-|.+ +++-+.+.. .+.++.+.+...-..+ ...++.... ..-.+.
T Consensus 171 ~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiA 246 (502)
T PRK13343 171 RQTGKTAIAIDAIINQK----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIA 246 (502)
T ss_pred CCCCccHHHHHHHHhhc----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHH
Confidence 589999996 6666542 24553 666666654 4667777765432110 011110111 112244
Q ss_pred HHHh-cCCcEEEEEeCCCCc
Q 042869 67 ERLK-KEPKILIILDDIWGS 85 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~~ 85 (707)
+++. +|+++|+|+||+...
T Consensus 247 Eyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 247 EYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHhCCCCEEEEecchHHH
Confidence 4543 578999999999643
No 415
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.01 E-value=3.6 Score=39.88 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||+-||++|+..-... |++||... +... ..+..+.++..+++--+..|.-+|.+|.
T Consensus 175 PGTGKSYLAKAVATEAnST-------FFSvSSSD----LvSK----------WmGESEkLVknLFemARe~kPSIIFiDE 233 (439)
T KOG0739|consen 175 PGTGKSYLAKAVATEANST-------FFSVSSSD----LVSK----------WMGESEKLVKNLFEMARENKPSIIFIDE 233 (439)
T ss_pred CCCcHHHHHHHHHhhcCCc-------eEEeehHH----HHHH----------HhccHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 7999999999999765433 34454321 1111 1111233445555555567899999999
Q ss_pred CCC
Q 042869 82 IWG 84 (707)
Q Consensus 82 v~~ 84 (707)
|+.
T Consensus 234 iDs 236 (439)
T KOG0739|consen 234 IDS 236 (439)
T ss_pred hhh
Confidence 963
No 416
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=80.01 E-value=1.2 Score=41.42 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||+|+.+......
T Consensus 8 sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 8 SGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp TTSSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhCc
Confidence 699999999999987764
No 417
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.96 E-value=5.5 Score=38.47 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEE-----EecCCcCHHHHHHHHHHHhchhhhhcch------hhHHHHH-HHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISS-----RVSQTPQIKNIQGEIAEKIGLELAEQSH------ETVRAGR-LLERL 69 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----~~s~~~~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~-~~~~l 69 (707)
.|.||||+|+.+..-.... .+.+.|- ..+ .....+-..++++.++........ .-..++. +.+.+
T Consensus 48 SG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred CCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 6999999999999765532 3333331 111 223445566677776643322211 1112222 33334
Q ss_pred hcCCcEEEEEeCCCCcccc---cccccccC--CCCCCeEEEEeeCCcccc
Q 042869 70 KKEPKILIILDDIWGSLDL---EAIGIPFA--DNNSGCKVLLTARSQDVL 114 (707)
Q Consensus 70 ~~~kr~LlVlDdv~~~~~~---~~l~~~l~--~~~~gs~iivTtr~~~v~ 114 (707)
. -+.=++|.|.--+.-+. +++...+. ....|-..+..|-+-.++
T Consensus 125 a-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 125 A-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173 (268)
T ss_pred h-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhh
Confidence 3 36889999997544221 12211111 112255566666666555
No 418
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.57 E-value=1.4 Score=25.37 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=10.0
Q ss_pred CCccEEEecCCCcccCCcc
Q 042869 366 TELRVLDFTQMYLLALPSS 384 (707)
Q Consensus 366 ~~L~~L~l~~~~~~~lp~~ 384 (707)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 419
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.57 E-value=1.4 Score=25.37 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=10.0
Q ss_pred CCccEEEecCCCcccCCcc
Q 042869 366 TELRVLDFTQMYLLALPSS 384 (707)
Q Consensus 366 ~~L~~L~l~~~~~~~lp~~ 384 (707)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 420
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=79.40 E-value=13 Score=37.15 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCc-EEEEEecCCcCH-HHHHHHHHHHh----chhhhhcchhhHHHHHHHHHHhcC---
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEK-VISSRVSQTPQI-KNIQGEIAEKI----GLELAEQSHETVRAGRLLERLKKE--- 72 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~-~~~~~~i~~~l----~~~~~~~~~~~~~~~~~~~~l~~~--- 72 (707)
.|.|||+|...+..+. +.|.. ..-|.....-.. .-.++.|.+|+ .........-.+....+.+.+..+
T Consensus 58 rgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~ 134 (408)
T KOG2228|consen 58 RGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDET 134 (408)
T ss_pred CCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCC
Confidence 5999999998888772 22433 333444443332 12344444444 333333333345566777777642
Q ss_pred --CcEEEEEeCCCCcc----c---ccccccccCCCCCCeEEEEeeCCcccc------ccccCCcceEEeecCChHHHHHH
Q 042869 73 --PKILIILDDIWGSL----D---LEAIGIPFADNNSGCKVLLTARSQDVL------SCKMDCQQNFFVDVLNEKEAWSL 137 (707)
Q Consensus 73 --kr~LlVlDdv~~~~----~---~~~l~~~l~~~~~gs~iivTtr~~~v~------~~~~~~~~~~~l~~L~~~~a~~L 137 (707)
-++..|+|.++-.- | ++-+...=....+-+-|-+|||-...- +.+.....++-++.++-++...+
T Consensus 135 t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l 214 (408)
T KOG2228|consen 135 TSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDL 214 (408)
T ss_pred CCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHH
Confidence 25888888876321 1 111100101223456677788863221 11223333556666777777777
Q ss_pred HHhhh
Q 042869 138 FKKMT 142 (707)
Q Consensus 138 f~~~~ 142 (707)
++...
T Consensus 215 ~r~ll 219 (408)
T KOG2228|consen 215 YRKLL 219 (408)
T ss_pred HHHHh
Confidence 66654
No 421
>PRK10646 ADP-binding protein; Provisional
Probab=79.34 E-value=1.2 Score=39.16 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.8
Q ss_pred CCcHHHHHHHHHHHhhh
Q 042869 3 GIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 3 GiGKTtLa~~v~~~~~~ 19 (707)
|+||||++|.+.....+
T Consensus 38 GaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 38 GAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 89999999999987654
No 422
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.30 E-value=2.4 Score=41.69 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQ 36 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 36 (707)
||+||||+|-.+........ -..+.-++...+.+
T Consensus 12 GGvGKTT~a~nLa~~La~~~-~~kVLliDlDpQ~s 45 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRG-GKKVLLIDLDPQGS 45 (259)
T ss_pred CCccHHHHHHHHHHHHHHhc-CCcEEEEeCCCcch
Confidence 89999999999998876331 14566777655433
No 423
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=79.23 E-value=7.5 Score=42.55 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhc
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIG 49 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 49 (707)
+|+|||++|.++....... -..++|+..... ..++.+.+ ++++
T Consensus 282 ~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g 324 (509)
T PRK09302 282 TGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWG 324 (509)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcC
Confidence 6999999999888765433 466888876553 55555444 3444
No 424
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.22 E-value=1.2 Score=44.04 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH-hchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK-IGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
.|+|||++++.......... | ...-++.+..-+...++ .++++ +.......- . =..+|+.++++|
T Consensus 42 ~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~~-g----------P~~~k~lv~fiD 107 (272)
T PF12775_consen 42 SGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRVY-G----------PPGGKKLVLFID 107 (272)
T ss_dssp TTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHH-HCCCTTECECTTEEE-E----------EESSSEEEEEEE
T ss_pred CCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCCC-C----------CCCCcEEEEEec
Confidence 69999999999876543321 1 13334555443333333 22221 111000000 0 013688999999
Q ss_pred CCC
Q 042869 81 DIW 83 (707)
Q Consensus 81 dv~ 83 (707)
|+-
T Consensus 108 DlN 110 (272)
T PF12775_consen 108 DLN 110 (272)
T ss_dssp TTT
T ss_pred ccC
Confidence 984
No 425
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=79.17 E-value=6.1 Score=41.68 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhchh-------hhhcch-----hhHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGLE-------LAEQSH-----ETVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~~~~~~~~~ 68 (707)
.|+|||||++.+..... .+.++...+... ....++...+...-+.. ..++.. .....-.+.++
T Consensus 177 sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEy 252 (451)
T PRK05688 177 TGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEY 252 (451)
T ss_pred CCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999998876421 234333333332 34556665555432110 011110 01112234455
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 253 frd~G~~VLl~~DslTR 269 (451)
T PRK05688 253 FRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHCCCCEEEEecchhH
Confidence 53 47899999999854
No 426
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=78.96 E-value=1.3 Score=38.03 Aligned_cols=18 Identities=39% Similarity=0.375 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
-|+||||+++.++.....
T Consensus 31 lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 489999999999987543
No 427
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=78.77 E-value=5.6 Score=41.68 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=39.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
.|+|||||++.+....... . .++. -+.+ .....++..+.+.+-+. ....++.. ....-.+.++
T Consensus 146 sG~GKTtLl~~i~~~~~~~--~-gvi~-~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEy 221 (413)
T TIGR03497 146 SGVGKSTLLGMIARNAKAD--I-NVIA-LIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEY 221 (413)
T ss_pred CCCCHHHHHHHHhCCCCCC--e-EEEE-EEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999888754322 1 1222 2332 22445555544432110 01111100 1122234455
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 222 fr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 222 FRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHCCCCEEEEEcCcHH
Confidence 53 47899999999853
No 428
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=78.75 E-value=1.4 Score=40.27 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 10 ~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 10 GSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998764
No 429
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.75 E-value=4.6 Score=39.02 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=35.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|.|||-||++|+|..... |-.+ +-.++++.-. ++....++++++.-...-.-.+++|.
T Consensus 228 PGTGKTLLAKAVANqTSAT--FlRv-------------vGseLiQkyl------GdGpklvRqlF~vA~e~apSIvFiDE 286 (440)
T KOG0726|consen 228 PGTGKTLLAKAVANQTSAT--FLRV-------------VGSELIQKYL------GDGPKLVRELFRVAEEHAPSIVFIDE 286 (440)
T ss_pred CCCchhHHHHHHhcccchh--hhhh-------------hhHHHHHHHh------ccchHHHHHHHHHHHhcCCceEEeeh
Confidence 7999999999999987654 4211 1112221111 11233455555555445577888888
Q ss_pred CC
Q 042869 82 IW 83 (707)
Q Consensus 82 v~ 83 (707)
++
T Consensus 287 Id 288 (440)
T KOG0726|consen 287 ID 288 (440)
T ss_pred hh
Confidence 75
No 430
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=78.60 E-value=1.6 Score=39.53 Aligned_cols=17 Identities=53% Similarity=0.767 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+++.+++..+
T Consensus 8 pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEELK 24 (168)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 69999999999998764
No 431
>PRK10867 signal recognition particle protein; Provisional
Probab=78.52 E-value=7.8 Score=40.90 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||.|..++.....
T Consensus 109 ~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 109 QGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 799999988888775543
No 432
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=78.50 E-value=2.1 Score=48.64 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+.+..... ...+.++++.-..... +.+-++.+....+ .+....+.+.+.+...-+|+||+
T Consensus 497 ~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~----~~~LiG~~~gyvg--~~~~g~L~~~v~~~p~sVlllDE 565 (758)
T PRK11034 497 TGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT----VSRLIGAPPGYVG--FDQGGLLTDAVIKHPHAVLLLDE 565 (758)
T ss_pred CCCCHHHHHHHHHHHhC-----CCcEEeechhhccccc----HHHHcCCCCCccc--ccccchHHHHHHhCCCcEEEecc
Confidence 59999999999987662 1233445443222111 1111232211111 11112233444444457999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
++..
T Consensus 566 ieka 569 (758)
T PRK11034 566 IEKA 569 (758)
T ss_pred Hhhh
Confidence 9865
No 433
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=78.39 E-value=7.3 Score=33.77 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
.|.||||++++++......
T Consensus 4 sG~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 4 SGSGKSTVGSALAERLGAK 22 (161)
T ss_pred CccCHHHHHHHHHHHcCCc
Confidence 5999999999999876543
No 434
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.38 E-value=3.7 Score=37.45 Aligned_cols=58 Identities=26% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHHHHhcCC--cEEEEEeCCCCcc---cccccccccCC-CCCCeEEEEeeCCccccccccCCcceEEe
Q 042869 65 LLERLKKEP--KILIILDDIWGSL---DLEAIGIPFAD-NNSGCKVLLTARSQDVLSCKMDCQQNFFV 126 (707)
Q Consensus 65 ~~~~l~~~k--r~LlVlDdv~~~~---~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~~l 126 (707)
+.+.+.. + .=++++|+-...- ..+.+...+.. ...|..||++|.+.+.+. ....++.+
T Consensus 98 laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~---~~d~i~~l 161 (176)
T cd03238 98 LASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS---SADWIIDF 161 (176)
T ss_pred HHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH---hCCEEEEE
Confidence 4444544 4 5788889975432 12222222211 124667888888876542 23444444
No 435
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=78.37 E-value=6.9 Score=38.01 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+||||+|+++......
T Consensus 8 SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 8 SGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 599999999999887653
No 436
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=78.29 E-value=2 Score=48.17 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCC---CcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcE-EE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLF---EKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKI-LI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~-Ll 77 (707)
.|+|||-||++++... | +..+-+++|+-..-..+.+=| |.+...-+-++ ...+-+..++ +.| .|
T Consensus 530 TGVGKTELAkaLA~~L-----fg~e~aliR~DMSEy~EkHsVSrLI----GaPPGYVGyee--GG~LTEaVRr-~PySVi 597 (786)
T COG0542 530 TGVGKTELAKALAEAL-----FGDEQALIRIDMSEYMEKHSVSRLI----GAPPGYVGYEE--GGQLTEAVRR-KPYSVI 597 (786)
T ss_pred CcccHHHHHHHHHHHh-----cCCCccceeechHHHHHHHHHHHHh----CCCCCCceecc--ccchhHhhhc-CCCeEE
Q ss_pred EEeCCCCc--ccccccccccCCC-----------CCCeEEEEee
Q 042869 78 ILDDIWGS--LDLEAIGIPFADN-----------NSGCKVLLTA 108 (707)
Q Consensus 78 VlDdv~~~--~~~~~l~~~l~~~-----------~~gs~iivTt 108 (707)
.||+|... +-.+-+...+.++ -..+-||.||
T Consensus 598 LlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 598 LLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred EechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
No 437
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=78.17 E-value=11 Score=36.00 Aligned_cols=39 Identities=28% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 44 (707)
+|+|||++|.+++.....+ =..+++++... +..++.+.+
T Consensus 25 ~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~~ 63 (224)
T TIGR03880 25 YGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGYA 63 (224)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHHH
Confidence 6999999998887654322 24567777655 344544443
No 438
>PRK13949 shikimate kinase; Provisional
Probab=78.14 E-value=1.5 Score=39.71 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
|+|+||||+|+.++....
T Consensus 9 ~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 9 YMGAGKTTLGKALARELG 26 (169)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 589999999999998764
No 439
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=78.02 E-value=6.6 Score=41.58 Aligned_cols=79 Identities=18% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~~~ 68 (707)
.|+|||||++.+...... +..+...+.. ...+.++..+.+..-+. .....+.. ....-.+.++
T Consensus 172 sG~GKStLl~~I~~~~~~----~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~ 247 (440)
T TIGR01026 172 SGVGKSTLLGMIARNTEA----DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEY 247 (440)
T ss_pred CCCCHHHHHHHHhCCCCC----CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999988875432 2222222322 23444555444332110 00011100 0112223344
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 248 frd~G~~Vll~~DslTr 264 (440)
T TIGR01026 248 FRDQGKDVLLLMDSVTR 264 (440)
T ss_pred HHHCCCCEEEEEeChHH
Confidence 42 47899999999853
No 440
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=77.95 E-value=1.5 Score=40.36 Aligned_cols=16 Identities=44% Similarity=0.464 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+||||+|+.+....
T Consensus 8 sgsGKTtla~~l~~~~ 23 (187)
T cd02024 8 TNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 6999999999999875
No 441
>PRK14974 cell division protein FtsY; Provisional
Probab=77.84 E-value=7.1 Score=39.71 Aligned_cols=82 Identities=22% Similarity=0.243 Sum_probs=40.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc--CHHHHHHHHHHHhchhhhhcchhh---HHHHHHHHHHhcCCcE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP--QIKNIQGEIAEKIGLELAEQSHET---VRAGRLLERLKKEPKI 75 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~l~~~kr~ 75 (707)
++|+||||.+..++...... .+. ++.+.. ..+ ...+-++...+.++.+........ .......+.......=
T Consensus 148 ~~GvGKTTtiakLA~~l~~~-g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~D 224 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKKN-GFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGID 224 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCC
Confidence 47999999998888766543 232 333432 222 223334556666665432211111 1111222222221223
Q ss_pred EEEEeCCCCc
Q 042869 76 LIILDDIWGS 85 (707)
Q Consensus 76 LlVlDdv~~~ 85 (707)
+|++|.....
T Consensus 225 vVLIDTaGr~ 234 (336)
T PRK14974 225 VVLIDTAGRM 234 (336)
T ss_pred EEEEECCCcc
Confidence 9999998643
No 442
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=77.82 E-value=4 Score=44.23 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHh----chh----------hhhcch-----hhHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKI----GLE----------LAEQSH-----ETVR 61 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l----~~~----------~~~~~~-----~~~~ 61 (707)
.|+|||+|++++.+.. .-|.++++-+.+.. .+.+++.++-+.. +.+ ....+. ..-.
T Consensus 236 ~G~GKTvl~~~iak~a----~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~yt 311 (586)
T PRK04192 236 FGSGKTVTQHQLAKWA----DADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYT 311 (586)
T ss_pred CCCCHHHHHHHHHhcC----CCCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHH
Confidence 5899999999988753 24788888777665 4667777765421 110 000000 0001
Q ss_pred HHHHHHHHh-cCCcEEEEEeCCC
Q 042869 62 AGRLLERLK-KEPKILIILDDIW 83 (707)
Q Consensus 62 ~~~~~~~l~-~~kr~LlVlDdv~ 83 (707)
...+.+++. .|+.+|++.|+..
T Consensus 312 giTiAEYfRd~G~~Vllm~DStS 334 (586)
T PRK04192 312 GITIAEYYRDMGYDVLLMADSTS 334 (586)
T ss_pred HHHHHHHHHHCCCCEEEEecChH
Confidence 223445553 4789999999984
No 443
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.68 E-value=5.8 Score=41.96 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+||||++..++........-..+..++..... ...+-++...+.++.+........ ......+.+. ..=+|++|
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~-~l~~~l~~~~--~~DlVlID 306 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPK-ELAKALEQLR--DCDVILID 306 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHH-hHHHHHHHhC--CCCEEEEe
Confidence 7999999998887766511112345556654321 112223333444444432222122 2223333332 34689999
Q ss_pred CCC
Q 042869 81 DIW 83 (707)
Q Consensus 81 dv~ 83 (707)
...
T Consensus 307 t~G 309 (424)
T PRK05703 307 TAG 309 (424)
T ss_pred CCC
Confidence 764
No 444
>PRK04040 adenylate kinase; Provisional
Probab=77.61 E-value=1.6 Score=40.37 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+++.+.....
T Consensus 10 ~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 589999999999988763
No 445
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=77.60 E-value=1.5 Score=40.83 Aligned_cols=19 Identities=42% Similarity=0.592 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|+||||+|+.++......
T Consensus 17 SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 17 SGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CCCCHHHHHHHHHHHhCcC
Confidence 5899999999999877643
No 446
>PRK14529 adenylate kinase; Provisional
Probab=77.48 E-value=6.3 Score=37.41 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCc--EEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEK--VISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILII 78 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlV 78 (707)
.+|+||||+|+.++...... +... .+.-.+........-.++++++- .-.+ .......+.+++.+....=+|
T Consensus 8 ~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G-~lvp----dei~~~lv~~~l~~~~~~g~i 81 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRG-DLVP----DDITIPMILETLKQDGKNGWL 81 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhcc-Ccch----HHHHHHHHHHHHhccCCCcEE
Confidence 47999999999998876543 2221 11112222222333344444321 1111 122233344555432234589
Q ss_pred EeCCCCc
Q 042869 79 LDDIWGS 85 (707)
Q Consensus 79 lDdv~~~ 85 (707)
||+.-..
T Consensus 82 LDGfPRt 88 (223)
T PRK14529 82 LDGFPRN 88 (223)
T ss_pred EeCCCCC
Confidence 9998644
No 447
>PRK06547 hypothetical protein; Provisional
Probab=77.46 E-value=1.6 Score=39.56 Aligned_cols=18 Identities=33% Similarity=0.435 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
.+|+||||+|+.+.....
T Consensus 23 ~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 23 RSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 379999999999988643
No 448
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=77.30 E-value=1.6 Score=40.17 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998765
No 449
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=77.26 E-value=5.1 Score=45.99 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+|+.+.....
T Consensus 358 pG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 358 PGVGKTSLGQSIAKATG 374 (784)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999997653
No 450
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.24 E-value=9 Score=39.58 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhc-CCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKK-EPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~kr~LlVl 79 (707)
+|+||||++..++.....+ .+ .+..+...... ...+-++...+..+.+..... ....+....+.+.. .+.=+|++
T Consensus 250 tGvGKTTTiaKLA~~L~~~-Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-d~~~L~~aL~~lk~~~~~DvVLI 326 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGK-KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEEARVDYILI 326 (436)
T ss_pred CCCcHHHHHHHHHHHHHHc-CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-CHHHHHHHHHHHHhccCCCEEEE
Confidence 7999999999998766433 12 23344443221 122223334444454433222 12222333344432 12347788
Q ss_pred eCCCC
Q 042869 80 DDIWG 84 (707)
Q Consensus 80 Ddv~~ 84 (707)
|....
T Consensus 327 DTaGR 331 (436)
T PRK11889 327 DTAGK 331 (436)
T ss_pred eCccc
Confidence 88753
No 451
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=77.10 E-value=8.5 Score=40.60 Aligned_cols=79 Identities=14% Similarity=0.305 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec-CCcCHHHHHHHHHHHhchh-------hhhcchh-----hHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS-QTPQIKNIQGEIAEKIGLE-------LAEQSHE-----TVRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~~~~~~~ 68 (707)
.|+|||||.+.+..... .+..+.+.+. +...+.++..+........ ....+.. ......+.++
T Consensus 154 sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~ 229 (422)
T TIGR02546 154 AGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEY 229 (422)
T ss_pred CCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 59999999999987543 2333333333 3345555655544321110 0000000 0111223344
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. .++++|+++|++..
T Consensus 230 f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 230 FRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHCCCcEEEEEeCchH
Confidence 42 46899999999963
No 452
>PRK05480 uridine/cytidine kinase; Provisional
Probab=77.00 E-value=1.6 Score=41.24 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+||||||+.++...
T Consensus 15 sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 15 SGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999875
No 453
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=76.86 E-value=4.8 Score=42.29 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHH-hchh-----hhhcch-----hhHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEK-IGLE-----LAEQSH-----ETVRAGRLLERL 69 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~-l~~~-----~~~~~~-----~~~~~~~~~~~l 69 (707)
.|+|||||++.+..... -+..+..-+.+.. ...++.+..+.. +... ...++. .......+.+++
T Consensus 166 sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEyF 241 (434)
T PRK08472 166 SGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYF 241 (434)
T ss_pred CCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHHHHHHHHHHH
Confidence 59999999999986432 2333333333333 233433332211 1000 000100 011223345555
Q ss_pred h-cCCcEEEEEeCCCC
Q 042869 70 K-KEPKILIILDDIWG 84 (707)
Q Consensus 70 ~-~~kr~LlVlDdv~~ 84 (707)
. +|+++|+++||+..
T Consensus 242 rd~G~~Vll~~DslTr 257 (434)
T PRK08472 242 KNQGLDVLFIMDSVTR 257 (434)
T ss_pred HHcCCCEEEecccchH
Confidence 3 47899999999954
No 454
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=76.80 E-value=5.9 Score=38.71 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcc--hhhHHHHHHHHHHhcCCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQS--HETVRAGRLLERLKKEPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~kr~LlVl 79 (707)
+|+||.-+|+.++++...... ..............+....- -..+....++.....-+|-|+||
T Consensus 119 tGTGKN~Va~iiA~n~~~~Gl--------------~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIF 184 (344)
T KOG2170|consen 119 TGTGKNYVAEIIAENLYRGGL--------------RSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIF 184 (344)
T ss_pred CCCchhHHHHHHHHHHHhccc--------------cchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEe
Confidence 699999999999987543200 01111222222222222111 12334455555566668999999
Q ss_pred eCCCCc
Q 042869 80 DDIWGS 85 (707)
Q Consensus 80 Ddv~~~ 85 (707)
|+|+..
T Consensus 185 DE~DKm 190 (344)
T KOG2170|consen 185 DEVDKL 190 (344)
T ss_pred chhhhc
Confidence 999865
No 455
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.72 E-value=12 Score=38.48 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhc-CCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKK-EPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~kr~LlVl 79 (707)
.|+||||++..+......+ -..+.++++.... ...+-++...+.++.+..... .........+.+.. +..=+|++
T Consensus 215 tGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~-dp~dL~~al~~l~~~~~~D~VLI 291 (407)
T PRK12726 215 TGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT-SPAELEEAVQYMTYVNCVDHILI 291 (407)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC-CHHHHHHHHHHHHhcCCCCEEEE
Confidence 5999999999998765433 2345566654332 234455556666665443222 22233444444431 23468889
Q ss_pred eCCCC
Q 042869 80 DDIWG 84 (707)
Q Consensus 80 Ddv~~ 84 (707)
|-...
T Consensus 292 DTAGr 296 (407)
T PRK12726 292 DTVGR 296 (407)
T ss_pred ECCCC
Confidence 98864
No 456
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=76.59 E-value=9.3 Score=41.84 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIA 45 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 45 (707)
+|+|||++|.++......+ +=..++|++... +..++.+.+.
T Consensus 40 pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee--~~~~i~~~~~ 80 (509)
T PRK09302 40 AGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE--SPEDIIRNVA 80 (509)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC--CHHHHHHHHH
Confidence 6999999999887654432 124578887665 4555555553
No 457
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.56 E-value=8.8 Score=39.88 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHhhhcc--CCCcEEEEEecCC-cCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENN--LFEKVISSRVSQT-PQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILII 78 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlV 78 (707)
.|+||||.+..++....... .-..+..+++... ....+-++...+.++.+....... +........+ + +.-+|+
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~-~~l~~~L~~~-~-~~DlVL 259 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESF-KDLKEEITQS-K-DFDLVL 259 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcH-HHHHHHHHHh-C-CCCEEE
Confidence 59999999999987665321 1123444554432 122333666666676654333322 2223333333 2 357899
Q ss_pred EeCCCC
Q 042869 79 LDDIWG 84 (707)
Q Consensus 79 lDdv~~ 84 (707)
+|....
T Consensus 260 IDTaGr 265 (388)
T PRK12723 260 VDTIGK 265 (388)
T ss_pred EcCCCC
Confidence 999863
No 458
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=76.33 E-value=4.5 Score=46.19 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
-|+|||-||+++..-.-.. .+..+-+++|+ ... +.+-++.+.... ......++.+.+++.--..|.|||
T Consensus 600 dgvGKt~lAkaLA~~~Fgs--e~~~IriDmse------~~e-vskligsp~gyv--G~e~gg~LteavrrrP~sVVLfde 668 (898)
T KOG1051|consen 600 DGVGKTELAKALAEYVFGS--EENFIRLDMSE------FQE-VSKLIGSPPGYV--GKEEGGQLTEAVKRRPYSVVLFEE 668 (898)
T ss_pred CchhHHHHHHHHHHHHcCC--ccceEEechhh------hhh-hhhccCCCcccc--cchhHHHHHHHHhcCCceEEEEec
Confidence 4899999999998866332 44455555443 222 333333333222 234456788888875566888999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
|+..
T Consensus 669 IEkA 672 (898)
T KOG1051|consen 669 IEKA 672 (898)
T ss_pred hhhc
Confidence 9865
No 459
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=76.30 E-value=0.84 Score=39.78 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCcc--cccccccccCC-CCCCeEEEEeeCCc
Q 042869 74 KILIILDDIWGSL--DLEAIGIPFAD-NNSGCKVLLTARSQ 111 (707)
Q Consensus 74 r~LlVlDdv~~~~--~~~~l~~~l~~-~~~gs~iivTtr~~ 111 (707)
.--++++|++... ....+...+.. .....|+|.||+..
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 3457789987652 23333333321 24577999998864
No 460
>PRK13946 shikimate kinase; Provisional
Probab=76.30 E-value=1.8 Score=39.89 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
|+|+||||+|+.+......
T Consensus 18 ~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 6899999999999987643
No 461
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=76.28 E-value=1.9 Score=38.30 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 7 ~~GsGKstla~~la~~l~ 24 (154)
T cd00464 7 MMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999987653
No 462
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=76.24 E-value=4 Score=37.63 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAE 46 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~ 46 (707)
-|+||||+++.+++....... . +.+..... ....+.+++++.
T Consensus 5 DGsGKtT~~~~L~~~l~~~~~-~--~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKGY-K--VIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTTE-E--EEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC-c--ccccCCCCCChHHHHHHHHHh
Confidence 599999999999998776522 2 22222222 224456666655
No 463
>PRK06696 uridine kinase; Validated
Probab=76.20 E-value=1.8 Score=41.46 Aligned_cols=18 Identities=33% Similarity=0.566 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||+|+.+......
T Consensus 31 sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 31 TASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999999999987643
No 464
>PRK03846 adenylylsulfate kinase; Provisional
Probab=76.14 E-value=6 Score=36.93 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 32 ~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 32 LSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 359999999999988654
No 465
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=76.03 E-value=5.1 Score=35.12 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
.|.|||||++.+...... ....+|++-.. .++.-.. -+..+.....+.+.+.. +.=++++|+
T Consensus 35 nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~-~p~illlDE 96 (144)
T cd03221 35 NGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLE-NPNLLLLDE 96 (144)
T ss_pred CCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 599999999999875432 23334332100 0000000 11112223334555555 567899999
Q ss_pred CCCcc---cccccccccCCCCCCeEEEEeeCCcccc
Q 042869 82 IWGSL---DLEAIGIPFADNNSGCKVLLTARSQDVL 114 (707)
Q Consensus 82 v~~~~---~~~~l~~~l~~~~~gs~iivTtr~~~v~ 114 (707)
-...- ..+.+...+... +..||++|.+.+.+
T Consensus 97 P~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 97 PTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 75432 122222222111 24678888776543
No 466
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=75.98 E-value=4.3 Score=42.66 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||++|+.+.....
T Consensus 117 ~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 117 TGSGKTLLAQTLARILD 133 (412)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999987553
No 467
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=75.79 E-value=2 Score=38.53 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
|.|+||||+.++++....-.
T Consensus 10 ~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 10 FMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred CCCCCHhHHHHHHHHHcCCC
Confidence 67999999999999876544
No 468
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=75.72 E-value=2.3 Score=33.93 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||+|..+......
T Consensus 8 ~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 8 GGVGKTTLAANLAAALAK 25 (99)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999987754
No 469
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=75.71 E-value=13 Score=36.68 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEec
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVS 32 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 32 (707)
.+|+||||.+..++...... -..+.+++..
T Consensus 80 ~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 37999999999998776533 2345555544
No 470
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=75.59 E-value=1.8 Score=37.62 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHHhhh
Q 042869 3 GIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 3 GiGKTtLa~~v~~~~~~ 19 (707)
|.||||++|.+.....+
T Consensus 35 GAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 35 GAGKTTLVRGIAKGLGV 51 (149)
T ss_pred cCChHHHHHHHHHHcCC
Confidence 89999999999986653
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.54 E-value=7.6 Score=44.67 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=59.1
Q ss_pred CcEEEEEeCCCCccc---cccc----ccccCCCCCCeEEEEeeCCccccccccCCcc--eEEeecCChHHHHHHHHhhhc
Q 042869 73 PKILIILDDIWGSLD---LEAI----GIPFADNNSGCKVLLTARSQDVLSCKMDCQQ--NFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 73 kr~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~--~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
.+-|+++|.....-+ -..+ ...+. ..|..+|+||-+.+++........ .+.+.. +.+ ......+...
T Consensus 407 ~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d~~-~l~~~Ykl~~ 482 (782)
T PRK00409 407 KNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF-DEE-TLRPTYRLLI 482 (782)
T ss_pred cCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-ecC-cCcEEEEEee
Confidence 578999999875422 2222 12221 247789999999777532222111 112211 111 1000001111
Q ss_pred CCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042869 144 DCRENGELKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLERT 194 (707)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~ 194 (707)
+... ...|-.|++.+ |+|-.+..-|..+.........+++..+...
T Consensus 483 G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 483 GIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEEL 528 (782)
T ss_pred CCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 1111 23477777776 7888888888777655555666666665543
No 472
>PRK13975 thymidylate kinase; Provisional
Probab=75.50 E-value=2 Score=40.12 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
+.|+||||+|+.+......
T Consensus 10 ~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 4699999999999987653
No 473
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=75.42 E-value=3.7 Score=40.59 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQI 37 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 37 (707)
||+||||+|..+......+ .+ .+.-|+...+.+.
T Consensus 10 GGvGKTT~~~nLA~~La~~-G~-kVlliD~Dpq~n~ 43 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEM-GK-KVMIVGCDPKADS 43 (270)
T ss_pred CcCCHHHHHHHHHHHHHhC-CC-eEEEEEcCCCCCc
Confidence 8999999999988877543 12 3555666555443
No 474
>PRK06820 type III secretion system ATPase; Validated
Probab=75.08 E-value=7.4 Score=41.04 Aligned_cols=79 Identities=13% Similarity=0.282 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhc-------hhhhhcchhh-----HHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIG-------LELAEQSHET-----VRAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~-------~~~~~~~~~~-----~~~~~~~~~ 68 (707)
.|+|||||++.+..... -+.++..-+.+.. .+.++.++.+..-. .....++... ...-.+.++
T Consensus 172 sG~GKStLl~~I~~~~~----~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEy 247 (440)
T PRK06820 172 AGVGKSTLLGMLCADSA----ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEY 247 (440)
T ss_pred CCCChHHHHHHHhccCC----CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998876432 3344444444432 23333333322100 0000010000 112234444
Q ss_pred Hh-cCCcEEEEEeCCCC
Q 042869 69 LK-KEPKILIILDDIWG 84 (707)
Q Consensus 69 l~-~~kr~LlVlDdv~~ 84 (707)
+. +|+++|+++||+..
T Consensus 248 frd~G~~VLl~~Dsltr 264 (440)
T PRK06820 248 FRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHcCCCEEEEccchhH
Confidence 43 47899999999853
No 475
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=75.04 E-value=2.6 Score=39.91 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCCCccc---cc----ccccccCCC-CCCeEEEEeeCCccccc
Q 042869 72 EPKILIILDDIWGSLD---LE----AIGIPFADN-NSGCKVLLTARSQDVLS 115 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~~---~~----~l~~~l~~~-~~gs~iivTtr~~~v~~ 115 (707)
.++-|+++|.....-+ .. ++...+... ..+..+|+||-+.+.+.
T Consensus 107 ~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 107 TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 3689999999875422 11 122223222 22457899999877764
No 476
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=75.03 E-value=1.7 Score=38.60 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=12.1
Q ss_pred CCCcHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVG 14 (707)
Q Consensus 2 gGiGKTtLa~~v~ 14 (707)
+|+||||+|+.+.
T Consensus 9 PGvGKTT~~~~L~ 21 (180)
T COG1936 9 PGVGKTTVCKLLR 21 (180)
T ss_pred CCCchHHHHHHHH
Confidence 7999999999887
No 477
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=74.98 E-value=2.7 Score=40.34 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISS 29 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (707)
||+||||+|..+.--.... |..+..-
T Consensus 11 GGtGKTTva~~la~~l~~~--~~~~l~D 36 (284)
T COG1149 11 GGTGKTTVAANLAVLLGDK--YKLVLAD 36 (284)
T ss_pred CCCChhhHHHHHHHHhccc--cceEEEe
Confidence 8999999999888766554 6665554
No 478
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=74.83 E-value=2 Score=38.43 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
.|+||||+++.++......
T Consensus 1 ~GsGKStvg~~lA~~L~~~ 19 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRP 19 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSE
T ss_pred CCCcHHHHHHHHHHHhCCC
Confidence 5899999999999987654
No 479
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=74.61 E-value=1.9 Score=40.63 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||||+.+.....
T Consensus 15 sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 15 SGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999997654
No 480
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=74.60 E-value=4.3 Score=35.94 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEE---EecCCcCHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISS---RVSQTPQIKNIQGEIAEKI 48 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv---~~s~~~~~~~~~~~i~~~l 48 (707)
-|.||||+|.++.+= |...-+| ++..+ ....+.+..++.+
T Consensus 8 iGCGKTTva~aL~~L------Fg~wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 8 IGCGKTTVALALSNL------FGEWGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CCcCHHHHHHHHHHH------cCCCCccccCCCCCC-CHHHHHHHHHHHH
Confidence 499999999999764 4431122 23334 5666777666666
No 481
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=74.56 E-value=2.3 Score=38.85 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
.||+||||+|..+......+
T Consensus 8 kgG~GKtt~a~~la~~l~~~ 27 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQL 27 (179)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 48999999999998876543
No 482
>PRK13695 putative NTPase; Provisional
Probab=74.46 E-value=3.4 Score=37.67 Aligned_cols=18 Identities=50% Similarity=0.748 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+|||||++.+++....
T Consensus 9 ~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 9 PGVGKTTLVLKIAELLKE 26 (174)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999999999887653
No 483
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=74.42 E-value=8.4 Score=40.55 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+....
T Consensus 164 sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 164 SGVGKSVLLGMITRYT 179 (434)
T ss_pred CCCCccHHHHHHhccc
Confidence 5899999999887644
No 484
>PRK13948 shikimate kinase; Provisional
Probab=74.35 E-value=2.2 Score=39.07 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
|.|+||||+++.+.....
T Consensus 18 ~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 18 FMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 679999999999988753
No 485
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.09 E-value=7.7 Score=40.12 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec-CCcCHHHHHHHHHHHhchhhhh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS-QTPQIKNIQGEIAEKIGLELAE 54 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~ 54 (707)
=|.||||-|-++++....+ .+. +.-|.+. ..+...+=++.+.++++.+.-.
T Consensus 109 QGsGKTTt~~KLA~~lkk~-~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKKK-GKK-VLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred cCCChHhHHHHHHHHHHHc-CCc-eEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 3899999999998877653 222 2222222 1223345566777777665433
No 486
>PRK00698 tmk thymidylate kinase; Validated
Probab=74.02 E-value=14 Score=34.63 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+||||+++.+.+....
T Consensus 12 ~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 12 DGAGKSTQIELLKELLEQ 29 (205)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 599999999999987654
No 487
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=73.99 E-value=2.3 Score=38.75 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 12 ~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCCcCHHHHHHHHHHHcC
Confidence 579999999999998653
No 488
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=73.95 E-value=2.5 Score=42.87 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
++|+||||+|-.+.+..+..
T Consensus 18 ~PGTGKTtfaLelL~~l~~~ 37 (484)
T PF07088_consen 18 EPGTGKTTFALELLNSLKDH 37 (484)
T ss_pred CCCCCceeeehhhHHHHhcc
Confidence 68999999999988876643
No 489
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=73.86 E-value=5.8 Score=37.41 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|.|||-||++|+++....
T Consensus 198 pg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 198 PGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred CCCcHHHHHHHHhhccchh
Confidence 6999999999999987654
No 490
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=73.81 E-value=2.4 Score=38.56 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
|.|+||||+|+.+.....
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 10 ARGCGKTTVGMALAQALG 27 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998753
No 491
>PRK05439 pantothenate kinase; Provisional
Probab=73.76 E-value=10 Score=38.03 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHH--HHHHHhchhhhhcchhhHHHHHHHHHHhcCCc
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQG--EIAEKIGLELAEQSHETVRAGRLLERLKKEPK 74 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr 74 (707)
+|+||||+|+.+.........-..+.-++...-....+.+. .++..-+. + +.-+.+........+++|+.
T Consensus 95 ~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~--P-es~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 95 VAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF--P-ESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCC--c-ccccHHHHHHHHHHHHcCCC
Confidence 69999999998887543211112233444443332222221 11111111 1 12244556667777776654
No 492
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=73.69 E-value=2.3 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 11 ~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 11 IPGVGKTSISGYIARHR 27 (197)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998874
No 493
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=73.65 E-value=4.6 Score=46.09 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||++|+.+++..
T Consensus 408 ~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 408 TGTGKELIARAIHNLS 423 (686)
T ss_pred CCcCHHHHHHHHHHhc
Confidence 6999999999998754
No 494
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=73.52 E-value=2.8 Score=35.11 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHHhhhc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (707)
.||+||||++..++.....+
T Consensus 7 kgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 38999999999998877543
No 495
>PRK07004 replicative DNA helicase; Provisional
Probab=73.47 E-value=7.9 Score=41.52 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKI 48 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 48 (707)
+|+|||++|..+..+...+.... ++++ |-+.+..++...++...
T Consensus 222 pg~GKT~~al~ia~~~a~~~~~~-v~~f--SlEM~~~ql~~R~la~~ 265 (460)
T PRK07004 222 PSMGKTAFSMNIGEYVAVEYGLP-VAVF--SMEMPGTQLAMRMLGSV 265 (460)
T ss_pred CCCCccHHHHHHHHHHHHHcCCe-EEEE--eCCCCHHHHHHHHHHhh
Confidence 69999999999887765442233 3343 56667888888887654
No 496
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=73.24 E-value=12 Score=39.29 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCc-EEEEEecCCcCHHHHHHHHHHHhchhhh------h-cchhhHHHHHHHHHHhcCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEK-VISSRVSQTPQIKNIQGEIAEKIGLELA------E-QSHETVRAGRLLERLKKEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~-~~~~~~~~~~~~~~l~~~k 73 (707)
+|+||||+|-.++...... .+. +.+ .|-+.+.+++...++...+.-.. . ...+...+......+.. .
T Consensus 205 P~mGKTafalnia~n~a~~--~~~~v~i--FSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~-~ 279 (435)
T COG0305 205 PGMGKTALALNIALNAAAD--GRKPVAI--FSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSE-A 279 (435)
T ss_pred CCCChHHHHHHHHHHHHHh--cCCCeEE--EEccCCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhh-C
Confidence 7999999999998877764 332 444 35567788888888766533211 1 11122344444555544 3
Q ss_pred cEEEEEeCCCCcc
Q 042869 74 KILIILDDIWGSL 86 (707)
Q Consensus 74 r~LlVlDdv~~~~ 86 (707)
+ |.+||.+...
T Consensus 280 ~--i~IdD~~~~s 290 (435)
T COG0305 280 P--IFIDDTPGLT 290 (435)
T ss_pred C--eeecCCCcCC
Confidence 4 8899987653
No 497
>PRK05973 replicative DNA helicase; Provisional
Probab=73.20 E-value=7.9 Score=37.12 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIA 45 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 45 (707)
+|+|||++|.++......+ =..+++++... +..++.+.+.
T Consensus 73 PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEe--s~~~i~~R~~ 112 (237)
T PRK05973 73 PGHGKTLLGLELAVEAMKS--GRTGVFFTLEY--TEQDVRDRLR 112 (237)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEEeC--CHHHHHHHHH
Confidence 7999999999887665432 23455655443 4556666553
No 498
>PRK14532 adenylate kinase; Provisional
Probab=73.20 E-value=2.3 Score=39.33 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998654
No 499
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=73.16 E-value=2.4 Score=39.14 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 11 ~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999998754
No 500
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=73.01 E-value=16 Score=40.24 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.+|+.|+.....+ +| -+++..-.+..++-. ..-..-+.-...+.++.+..+- .+=|+.+|.
T Consensus 447 PGVGKTSI~kSIA~ALnRk-Ff----RfSvGG~tDvAeIkG-------HRRTYVGAMPGkiIq~LK~v~t-~NPliLiDE 513 (906)
T KOG2004|consen 447 PGVGKTSIAKSIARALNRK-FF----RFSVGGMTDVAEIKG-------HRRTYVGAMPGKIIQCLKKVKT-ENPLILIDE 513 (906)
T ss_pred CCCCcccHHHHHHHHhCCc-eE----EEeccccccHHhhcc-------cceeeeccCChHHHHHHHhhCC-CCceEEeeh
Confidence 7999999999999876433 33 234555445443311 1100001111223333333333 367899999
Q ss_pred CCCcc------cccccccccCCCC-------------CCeEEEEeeCCcccc---ccccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------DLEAIGIPFADNN-------------SGCKVLLTARSQDVL---SCKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------~~~~l~~~l~~~~-------------~gs~iivTtr~~~v~---~~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
|+... --.++...+.+.. .=|+|+.......+. ....+--..+++.+...+|=.++-+
T Consensus 514 vDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~ 593 (906)
T KOG2004|consen 514 VDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAE 593 (906)
T ss_pred hhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHH
Confidence 97531 1111211221111 136666544433332 1122334578888888877666555
Q ss_pred hhh
Q 042869 140 KMT 142 (707)
Q Consensus 140 ~~~ 142 (707)
++.
T Consensus 594 ~yL 596 (906)
T KOG2004|consen 594 RYL 596 (906)
T ss_pred Hhh
Confidence 443
Done!