Query 042869
Match_columns 707
No_of_seqs 335 out of 3624
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 18:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.1E-41 1.8E-45 366.8 17.7 280 1-298 160-466 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.4E-33 4.8E-38 310.2 13.9 254 1-297 158-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-31 5.3E-36 324.7 17.4 275 1-298 155-447 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.5E-28 1.5E-32 269.2 18.4 272 1-298 155-447 (591)
5 4fmz_A Internalin; leucine ric 99.9 1.3E-25 4.5E-30 232.3 22.5 304 317-695 41-344 (347)
6 4ecn_A Leucine-rich repeat pro 99.9 2.9E-25 9.8E-30 251.6 25.4 291 357-658 440-787 (876)
7 4eco_A Uncharacterized protein 99.9 3.9E-25 1.3E-29 246.7 23.2 291 357-658 198-547 (636)
8 1o6v_A Internalin A; bacterial 99.9 8E-25 2.7E-29 235.6 24.0 322 317-695 65-386 (466)
9 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-24 4.5E-29 242.8 24.8 161 309-471 22-193 (606)
10 2z63_A TOLL-like receptor 4, v 99.9 1.9E-24 6.5E-29 239.8 25.4 359 309-695 18-481 (570)
11 4fmz_A Internalin; leucine ric 99.9 4E-24 1.4E-28 221.1 23.8 288 310-658 56-344 (347)
12 1o6v_A Internalin A; bacterial 99.9 8.1E-24 2.8E-28 227.7 26.1 320 319-695 45-364 (466)
13 3rgz_A Protein brassinosteroid 99.9 1.2E-24 4E-29 248.7 20.3 345 320-702 178-556 (768)
14 3t6q_A CD180 antigen; protein- 99.9 3.9E-24 1.3E-28 238.9 24.2 331 318-657 31-435 (606)
15 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-24 8.9E-29 237.4 20.6 324 318-663 24-425 (549)
16 3rgz_A Protein brassinosteroid 99.9 3.9E-24 1.3E-28 244.3 21.4 353 320-703 294-723 (768)
17 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.3E-28 226.1 23.4 356 310-696 22-407 (455)
18 4ecn_A Leucine-rich repeat pro 99.9 2.5E-24 8.6E-29 243.9 17.5 337 317-695 445-838 (876)
19 3t6q_A CD180 antigen; protein- 99.9 2.1E-23 7.2E-28 233.0 23.6 357 318-695 127-558 (606)
20 2z7x_B TOLL-like receptor 1, v 99.9 5E-23 1.7E-27 225.3 25.5 143 323-471 3-150 (520)
21 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-23 3.8E-28 232.3 20.5 355 316-696 46-509 (549)
22 3o6n_A APL1; leucine-rich repe 99.9 1.6E-23 5.6E-28 220.1 20.5 305 339-695 42-350 (390)
23 3bz5_A Internalin-J, INLJ; leu 99.9 3E-23 1E-27 221.3 22.4 295 318-657 40-349 (457)
24 3vq2_A TLR4, TOLL-like recepto 99.9 2.5E-23 8.6E-28 232.3 22.7 148 323-472 14-166 (606)
25 4eco_A Uncharacterized protein 99.9 6.8E-24 2.3E-28 236.7 15.9 189 340-531 247-470 (636)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.4E-27 223.2 25.1 144 322-471 33-181 (562)
27 2id5_A Lingo-1, leucine rich r 99.9 2.2E-22 7.6E-27 217.6 25.6 311 323-658 14-331 (477)
28 3oja_B Anopheles plasmodium-re 99.9 5.8E-23 2E-27 227.9 20.4 305 339-695 48-356 (597)
29 2z63_A TOLL-like receptor 4, v 99.9 1.8E-22 6.1E-27 223.9 24.2 343 317-701 49-510 (570)
30 3v47_A TOLL-like receptor 5B a 99.9 4E-22 1.4E-26 214.4 23.9 320 316-659 50-407 (455)
31 3o6n_A APL1; leucine-rich repe 99.9 9.5E-23 3.2E-27 214.3 17.7 303 317-658 42-350 (390)
32 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-22 1.1E-26 231.1 21.6 329 303-657 9-372 (844)
33 2id5_A Lingo-1, leucine rich r 99.9 7.5E-22 2.6E-26 213.4 22.7 312 344-695 13-331 (477)
34 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-21 4.5E-26 220.0 25.4 142 304-446 37-185 (635)
35 3j0a_A TOLL-like receptor 5; m 99.9 7.9E-22 2.7E-26 227.7 24.0 307 315-637 43-396 (844)
36 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-22 1.2E-26 218.5 18.4 349 319-701 20-484 (520)
37 3bz5_A Internalin-J, INLJ; leu 99.9 4.5E-22 1.5E-26 212.2 18.1 311 337-703 37-357 (457)
38 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-21 7.3E-26 219.8 24.6 154 318-472 23-184 (680)
39 3oja_B Anopheles plasmodium-re 99.9 4.6E-22 1.6E-26 220.6 18.0 302 318-658 49-356 (597)
40 1ziw_A TOLL-like receptor 3; i 99.9 4E-21 1.4E-25 217.5 24.2 174 323-510 7-186 (680)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.4E-22 3.2E-26 217.0 18.4 346 318-695 50-508 (562)
42 4fcg_A Uncharacterized protein 99.9 1.5E-21 5E-26 199.1 17.5 231 364-656 79-310 (328)
43 2ft3_A Biglycan; proteoglycan, 99.9 6.6E-21 2.3E-25 195.4 18.9 289 343-695 34-331 (332)
44 1xku_A Decorin; proteoglycan, 99.8 4.5E-20 1.5E-24 189.1 21.7 289 343-694 32-329 (330)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-20 6.4E-25 192.0 18.6 289 319-658 32-331 (332)
46 4g8a_A TOLL-like receptor 4; l 99.8 4.2E-19 1.4E-23 199.6 27.1 147 324-472 35-186 (635)
47 1jl5_A Outer protein YOPM; leu 99.8 2.8E-19 9.6E-24 190.4 24.1 319 319-699 90-410 (454)
48 1jl5_A Outer protein YOPM; leu 99.8 3.8E-19 1.3E-23 189.3 22.8 303 320-701 71-373 (454)
49 1ogq_A PGIP-2, polygalacturona 99.8 3.5E-20 1.2E-24 187.8 13.0 170 342-526 50-229 (313)
50 2z80_A TOLL-like receptor 2, v 99.8 6.6E-20 2.3E-24 189.7 15.2 192 325-529 36-233 (353)
51 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-20 1.1E-24 188.1 11.8 193 320-526 50-252 (313)
52 3g06_A SSPH2 (leucine-rich rep 99.8 8.5E-19 2.9E-23 192.3 23.5 261 321-664 41-301 (622)
53 1xku_A Decorin; proteoglycan, 99.8 7.1E-19 2.4E-23 180.1 21.4 289 319-657 30-329 (330)
54 4fcg_A Uncharacterized protein 99.8 1.5E-19 5.1E-24 184.3 15.9 78 343-421 82-160 (328)
55 2z80_A TOLL-like receptor 2, v 99.8 1.8E-19 6.3E-24 186.3 16.7 276 339-660 28-314 (353)
56 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.8E-23 186.8 16.7 240 322-604 56-300 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 1.5E-18 5E-23 185.2 17.2 240 322-604 45-289 (440)
58 2z66_A Variable lymphocyte rec 99.8 9.3E-19 3.2E-23 177.2 13.3 189 324-525 11-206 (306)
59 1ozn_A Reticulon 4 receptor; N 99.8 3E-18 1E-22 171.4 16.2 192 323-528 14-211 (285)
60 1ozn_A Reticulon 4 receptor; N 99.8 2.9E-18 9.8E-23 171.6 15.3 200 317-529 29-236 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-19 1.3E-23 180.7 8.1 262 345-662 13-277 (317)
62 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-19 6.6E-24 193.8 6.1 150 321-471 4-182 (461)
63 3zyj_A Leucine-rich repeat-con 99.8 2E-17 6.7E-22 176.4 19.8 168 343-526 44-215 (440)
64 3zyi_A Leucine-rich repeat-con 99.8 2E-17 7E-22 177.0 19.8 168 343-526 55-226 (452)
65 3ogk_B Coronatine-insensitive 99.8 7.4E-19 2.5E-23 195.6 8.7 198 319-528 163-388 (592)
66 2z66_A Variable lymphocyte rec 99.7 8.9E-18 3E-22 170.0 14.5 167 344-526 9-183 (306)
67 1h6u_A Internalin H; cell adhe 99.7 4E-17 1.4E-21 164.8 18.7 192 318-531 39-230 (308)
68 1p9a_G Platelet glycoprotein I 99.7 2.9E-17 9.8E-22 164.1 15.8 197 318-529 8-206 (290)
69 3g06_A SSPH2 (leucine-rich rep 99.7 2.7E-16 9.3E-21 172.5 24.6 240 319-637 60-299 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.7 2.7E-18 9.2E-23 174.4 7.9 268 340-662 32-301 (317)
71 2o6q_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 160.6 17.1 195 321-529 17-216 (270)
72 3ogk_B Coronatine-insensitive 99.7 3.3E-18 1.1E-22 190.4 7.9 193 320-526 112-326 (592)
73 1z7x_W Ribonuclease inhibitor; 99.7 1E-18 3.5E-23 188.1 2.4 203 319-529 27-267 (461)
74 3oja_A Leucine-rich immune mol 99.7 5.1E-18 1.7E-22 182.5 7.6 152 340-510 32-184 (487)
75 2p1m_B Transport inhibitor res 99.7 4.9E-18 1.7E-22 189.1 7.2 350 319-696 104-518 (594)
76 2p1m_B Transport inhibitor res 99.7 6E-18 2E-22 188.4 5.5 130 340-470 103-246 (594)
77 2z62_A TOLL-like receptor 4, v 99.7 1.8E-16 6.2E-21 157.6 15.6 198 318-529 26-235 (276)
78 2z62_A TOLL-like receptor 4, v 99.7 1.8E-16 6.1E-21 157.7 14.7 193 325-528 12-210 (276)
79 2o6q_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 153.6 16.8 178 318-508 35-218 (270)
80 1h6u_A Internalin H; cell adhe 99.7 1E-16 3.6E-21 161.7 11.3 205 325-575 24-228 (308)
81 2xwt_C Thyrotropin receptor; s 99.7 1.3E-16 4.3E-21 155.0 11.5 193 318-526 29-234 (239)
82 3oja_A Leucine-rich immune mol 99.7 4.3E-17 1.5E-21 175.3 9.0 235 318-602 32-270 (487)
83 3rfs_A Internalin B, repeat mo 99.7 9.4E-16 3.2E-20 151.9 16.3 176 318-508 39-218 (272)
84 1h6t_A Internalin B; cell adhe 99.7 1E-15 3.4E-20 153.0 16.4 171 319-510 45-215 (291)
85 3rfs_A Internalin B, repeat mo 99.7 2.2E-16 7.5E-21 156.5 11.0 194 320-529 19-216 (272)
86 1p9a_G Platelet glycoprotein I 99.7 6.7E-16 2.3E-20 154.1 14.5 177 339-531 7-185 (290)
87 1h6t_A Internalin B; cell adhe 99.7 4.9E-16 1.7E-20 155.3 13.1 190 321-532 25-214 (291)
88 2xwt_C Thyrotropin receptor; s 99.7 2.2E-16 7.6E-21 153.3 9.8 182 332-529 23-216 (239)
89 3m19_A Variable lymphocyte rec 99.6 1.9E-15 6.4E-20 147.8 16.4 177 320-510 14-194 (251)
90 2ast_B S-phase kinase-associat 99.6 2.7E-16 9.2E-21 161.5 10.3 225 343-631 48-282 (336)
91 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.9E-20 153.9 15.0 178 340-530 93-286 (312)
92 2ast_B S-phase kinase-associat 99.6 2.3E-16 7.8E-21 162.0 8.8 174 321-506 48-233 (336)
93 1wwl_A Monocyte differentiatio 99.6 9.5E-16 3.2E-20 155.2 11.7 194 319-529 94-307 (312)
94 1m9s_A Internalin B; cell inva 99.6 3.8E-15 1.3E-19 163.2 15.0 174 318-512 41-214 (605)
95 1m9s_A Internalin B; cell inva 99.6 2.6E-15 8.8E-20 164.6 11.7 192 319-532 20-211 (605)
96 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.7E-19 136.5 13.7 149 340-507 42-193 (197)
97 4ay9_X Follicle-stimulating ho 99.6 1.6E-14 5.4E-19 148.7 16.0 126 325-451 14-145 (350)
98 2o6s_A Variable lymphocyte rec 99.6 7.7E-15 2.6E-19 139.0 12.5 174 323-517 10-188 (208)
99 4ay9_X Follicle-stimulating ho 99.6 9.6E-15 3.3E-19 150.3 14.2 237 369-656 12-255 (350)
100 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 142.0 14.3 172 342-529 14-190 (251)
101 1xeu_A Internalin C; cellular 99.6 6.6E-15 2.3E-19 144.6 10.6 171 319-511 18-188 (263)
102 2ca6_A RAN GTPase-activating p 99.6 1.1E-15 3.9E-20 159.9 5.1 262 362-657 28-340 (386)
103 3e6j_A Variable lymphocyte rec 99.6 5.4E-14 1.8E-18 135.0 15.8 149 322-472 21-172 (229)
104 4ezg_A Putative uncharacterize 99.6 2.2E-14 7.6E-19 134.4 12.8 149 317-471 41-193 (197)
105 4glp_A Monocyte differentiatio 99.6 9.2E-15 3.2E-19 147.8 10.8 193 320-529 91-305 (310)
106 4glp_A Monocyte differentiatio 99.5 2.1E-14 7.2E-19 145.2 10.3 216 321-575 65-305 (310)
107 2ca6_A RAN GTPase-activating p 99.5 6.9E-15 2.4E-19 153.9 6.6 234 340-605 30-314 (386)
108 1xeu_A Internalin C; cellular 99.5 3.2E-14 1.1E-18 139.7 10.8 170 340-532 17-186 (263)
109 2v9t_B SLIT homolog 2 protein 99.5 1.1E-13 3.8E-18 131.9 14.1 148 323-472 14-165 (220)
110 3cvr_A Invasion plasmid antige 99.5 8.9E-14 3E-18 150.6 14.9 182 321-530 60-242 (571)
111 3goz_A Leucine-rich repeat-con 99.5 2.3E-14 7.7E-19 148.4 8.4 101 344-444 24-148 (362)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 1.7E-13 5.8E-18 130.6 13.5 148 323-472 14-166 (220)
113 2xot_A Amphoterin-induced prot 99.5 2.8E-13 9.5E-18 139.9 13.9 170 323-506 21-200 (361)
114 2o6s_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 130.4 9.5 147 318-472 26-178 (208)
115 2ell_A Acidic leucine-rich nuc 99.4 5.4E-13 1.8E-17 121.4 12.8 139 365-513 23-165 (168)
116 2v9t_B SLIT homolog 2 protein 99.4 3.3E-13 1.1E-17 128.6 11.7 146 345-506 14-163 (220)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 5.5E-13 1.9E-17 127.0 12.2 148 344-507 13-165 (220)
118 2xot_A Amphoterin-induced prot 99.4 5.8E-13 2E-17 137.6 13.1 162 309-472 29-202 (361)
119 3goz_A Leucine-rich repeat-con 99.4 1E-13 3.5E-18 143.4 7.4 203 319-529 21-264 (362)
120 3e6j_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 126.2 12.8 149 343-508 20-172 (229)
121 2ell_A Acidic leucine-rich nuc 99.4 2.2E-12 7.5E-17 117.3 11.3 127 342-471 24-159 (168)
122 3cvr_A Invasion plasmid antige 99.4 3E-12 1E-16 138.6 14.1 167 319-517 79-253 (571)
123 1dce_A Protein (RAB geranylger 99.4 8.8E-15 3E-19 159.4 -5.9 120 390-524 442-566 (567)
124 2je0_A Acidic leucine-rich nuc 99.4 2.4E-12 8.2E-17 114.5 10.5 129 365-503 16-148 (149)
125 2je0_A Acidic leucine-rich nuc 99.4 3E-12 1E-16 113.8 10.8 123 342-467 17-148 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.3 3.2E-12 1.1E-16 117.1 10.0 129 340-471 17-152 (176)
127 1a9n_A U2A', U2A'; complex (nu 99.3 9.8E-13 3.4E-17 120.6 6.5 134 362-506 15-151 (176)
128 2wfh_A SLIT homolog 2 protein 99.3 7.7E-12 2.6E-16 116.2 11.7 124 345-472 13-139 (193)
129 1w8a_A SLIT protein; signaling 99.3 6.7E-12 2.3E-16 116.7 10.2 123 345-471 11-138 (192)
130 1w8a_A SLIT protein; signaling 99.3 2.7E-11 9.4E-16 112.5 11.7 128 323-451 11-143 (192)
131 4b8c_D Glucose-repressible alc 99.2 1.5E-12 5.1E-17 146.6 3.2 105 340-445 222-327 (727)
132 2o6r_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 109.9 12.2 120 324-444 11-134 (177)
133 4b8c_D Glucose-repressible alc 99.2 8.8E-12 3E-16 140.2 8.2 150 320-472 173-329 (727)
134 1dce_A Protein (RAB geranylger 99.2 2.8E-11 9.7E-16 131.8 11.8 122 367-501 442-566 (567)
135 2wfh_A SLIT homolog 2 protein 99.2 5.9E-11 2E-15 110.2 11.9 122 323-446 13-138 (193)
136 2o6r_A Variable lymphocyte rec 99.2 9.6E-11 3.3E-15 107.4 11.9 126 343-472 8-137 (177)
137 1ds9_A Outer arm dynein; leuci 99.2 1.4E-12 4.8E-17 122.2 -1.5 108 361-471 43-152 (198)
138 1ds9_A Outer arm dynein; leuci 99.1 1.7E-12 5.6E-17 121.7 -2.7 126 338-465 44-180 (198)
139 2r9u_A Variable lymphocyte rec 99.0 7.2E-10 2.5E-14 100.8 10.2 97 345-444 15-115 (174)
140 2r9u_A Variable lymphocyte rec 99.0 9.6E-10 3.3E-14 100.0 10.0 102 368-472 14-118 (174)
141 2fna_A Conserved hypothetical 99.0 5.4E-09 1.9E-13 107.7 16.3 266 1-296 38-356 (357)
142 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 99.0 10.0 100 369-471 12-114 (170)
143 2qen_A Walker-type ATPase; unk 99.0 3.6E-09 1.2E-13 108.8 14.7 263 1-296 39-348 (350)
144 3g39_A Variable lymphocyte rec 99.0 2.1E-09 7.1E-14 97.4 10.7 96 346-444 13-112 (170)
145 1w5s_A Origin recognition comp 99.0 6.1E-09 2.1E-13 109.7 15.8 258 1-279 60-370 (412)
146 3sb4_A Hypothetical leucine ri 98.8 7.8E-09 2.7E-13 105.1 9.9 57 341-398 100-157 (329)
147 3un9_A NLR family member X1; l 98.8 1.9E-09 6.5E-14 110.9 4.5 134 366-508 101-252 (372)
148 3sb4_A Hypothetical leucine ri 98.8 1.7E-08 5.7E-13 102.6 10.2 64 356-420 83-157 (329)
149 4fdw_A Leucine rich hypothetic 98.7 3.2E-07 1.1E-11 95.2 17.4 163 342-526 113-279 (401)
150 2qby_B CDC6 homolog 3, cell di 98.7 1.7E-07 5.8E-12 97.5 13.8 215 1-232 53-295 (384)
151 2ifg_A High affinity nerve gro 98.6 6.9E-08 2.4E-12 98.9 8.3 100 325-424 13-116 (347)
152 2ifg_A High affinity nerve gro 98.6 1.9E-07 6.6E-12 95.5 10.7 100 345-446 11-115 (347)
153 1njg_A DNA polymerase III subu 98.6 3.9E-07 1.3E-11 88.1 12.2 104 72-176 125-231 (250)
154 2chg_A Replication factor C sm 98.5 5.9E-07 2E-11 85.4 12.5 157 2-175 47-206 (226)
155 4fs7_A Uncharacterized protein 98.5 1.5E-06 5.3E-11 90.4 16.4 126 338-468 67-217 (394)
156 3un9_A NLR family member X1; l 98.5 1.7E-08 5.9E-13 103.7 0.3 155 365-529 71-250 (372)
157 2qby_A CDC6 homolog 1, cell di 98.5 5.3E-07 1.8E-11 93.8 11.4 191 1-191 53-272 (386)
158 2ra8_A Uncharacterized protein 98.4 2.8E-07 9.4E-12 93.9 7.8 137 360-506 166-318 (362)
159 2v1u_A Cell division control p 98.4 9.2E-07 3.2E-11 92.0 11.5 215 1-231 52-300 (387)
160 4fdw_A Leucine rich hypothetic 98.4 1.8E-06 6.2E-11 89.6 13.0 170 343-525 158-330 (401)
161 3e4g_A ATP synthase subunit S, 98.3 2.3E-07 8E-12 82.5 3.5 93 564-663 61-155 (176)
162 3e4g_A ATP synthase subunit S, 98.3 3.2E-07 1.1E-11 81.6 3.6 89 595-699 62-154 (176)
163 1fnn_A CDC6P, cell division co 98.2 8.6E-06 2.9E-10 84.7 12.8 170 2-172 53-246 (389)
164 4fs7_A Uncharacterized protein 98.2 1.5E-05 5.2E-10 82.8 13.7 111 353-468 58-194 (394)
165 1sxj_B Activator 1 37 kDa subu 98.2 6.8E-06 2.3E-10 83.0 10.5 157 2-174 51-211 (323)
166 2ra8_A Uncharacterized protein 98.0 5.2E-06 1.8E-10 84.4 7.0 172 455-658 135-318 (362)
167 3rw6_A Nuclear RNA export fact 97.9 5.6E-06 1.9E-10 79.7 4.4 79 363-441 167-258 (267)
168 1io0_A Tropomodulin; LRR prote 97.9 1E-05 3.6E-10 73.9 5.7 111 361-471 31-163 (185)
169 4gt6_A Cell surface protein; l 97.9 0.00021 7.1E-09 74.2 16.1 120 343-468 65-191 (394)
170 4gt6_A Cell surface protein; l 97.9 0.0006 2.1E-08 70.6 18.9 109 356-468 53-169 (394)
171 1iqp_A RFCS; clamp loader, ext 97.9 2.8E-05 9.5E-10 78.6 8.4 104 72-176 109-215 (327)
172 1io0_A Tropomodulin; LRR prote 97.8 2.2E-05 7.5E-10 71.7 6.8 117 382-507 29-163 (185)
173 1hqc_A RUVB; extended AAA-ATPa 97.8 2.8E-05 9.5E-10 78.5 6.7 75 101-176 138-214 (324)
174 3te6_A Regulatory protein SIR3 97.7 0.00033 1.1E-08 69.1 13.5 141 2-143 54-212 (318)
175 4h09_A Hypothetical leucine ri 97.7 0.0006 2E-08 70.3 16.3 125 338-469 42-168 (379)
176 1d2n_A N-ethylmaleimide-sensit 97.6 0.00045 1.5E-08 67.5 12.6 168 2-195 73-265 (272)
177 2chq_A Replication factor C sm 97.6 0.00034 1.2E-08 70.2 11.6 101 72-173 101-204 (319)
178 3rw6_A Nuclear RNA export fact 97.6 0.0001 3.5E-09 70.9 6.8 79 386-465 167-257 (267)
179 1jr3_A DNA polymerase III subu 97.5 0.0005 1.7E-08 70.7 11.1 102 72-174 118-222 (373)
180 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0036 1.2E-07 60.6 14.7 150 2-172 48-221 (262)
181 3bos_A Putative DNA replicatio 97.3 0.00023 7.7E-09 68.1 5.3 142 2-172 61-216 (242)
182 3h4m_A Proteasome-activating n 97.2 0.0022 7.4E-08 63.1 11.6 147 2-171 60-229 (285)
183 1a5t_A Delta prime, HOLB; zinc 97.1 0.0025 8.6E-08 64.1 11.8 94 72-171 107-203 (334)
184 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0065 2.2E-07 60.6 14.1 152 2-174 54-224 (322)
185 2z4s_A Chromosomal replication 97.1 0.00091 3.1E-08 70.0 7.9 151 2-171 139-304 (440)
186 3eie_A Vacuolar protein sortin 97.0 0.0077 2.6E-07 60.2 14.0 149 2-172 60-227 (322)
187 3pvs_A Replication-associated 97.0 0.0054 1.9E-07 64.0 13.0 144 2-172 59-214 (447)
188 1sxj_D Activator 1 41 kDa subu 96.9 0.0019 6.4E-08 65.7 8.9 164 2-172 67-234 (353)
189 3u61_B DNA polymerase accessor 96.9 0.0027 9.1E-08 63.7 9.4 145 2-169 57-212 (324)
190 3d8b_A Fidgetin-like protein 1 96.9 0.011 3.9E-07 59.8 13.9 151 2-174 126-296 (357)
191 1jbk_A CLPB protein; beta barr 96.8 0.0011 3.8E-08 60.6 5.6 17 2-18 52-68 (195)
192 4h09_A Hypothetical leucine ri 96.8 0.02 7E-07 58.6 15.0 118 320-443 46-167 (379)
193 2qp9_X Vacuolar protein sortin 96.8 0.009 3.1E-07 60.5 11.9 150 2-173 93-261 (355)
194 2zan_A Vacuolar protein sortin 96.6 0.019 6.5E-07 60.0 13.9 151 2-173 176-345 (444)
195 4b4t_J 26S protease regulatory 96.6 0.016 5.6E-07 58.6 12.2 142 2-166 191-354 (405)
196 3syl_A Protein CBBX; photosynt 96.6 0.0035 1.2E-07 62.4 7.5 125 2-143 76-218 (309)
197 1sxj_E Activator 1 40 kDa subu 96.5 0.0057 1.9E-07 62.2 8.8 100 73-173 134-237 (354)
198 1l8q_A Chromosomal replication 96.5 0.0034 1.2E-07 62.9 6.6 144 2-167 46-202 (324)
199 3ec2_A DNA replication protein 96.5 0.0018 6.2E-08 58.5 4.1 92 2-111 47-143 (180)
200 1sxj_A Activator 1 95 kDa subu 96.5 0.0078 2.7E-07 64.5 9.6 158 2-174 86-254 (516)
201 3pfi_A Holliday junction ATP-d 96.5 0.019 6.6E-07 57.8 12.0 71 102-173 155-227 (338)
202 3vfd_A Spastin; ATPase, microt 96.4 0.041 1.4E-06 56.5 14.5 149 2-172 157-325 (389)
203 3uk6_A RUVB-like 2; hexameric 96.4 0.014 4.8E-07 59.6 10.5 48 122-170 252-300 (368)
204 2w58_A DNAI, primosome compone 96.3 0.0037 1.3E-07 57.7 5.4 91 2-111 63-159 (202)
205 1sxj_C Activator 1 40 kDa subu 96.3 0.013 4.6E-07 58.9 10.0 149 2-168 55-207 (340)
206 3b9p_A CG5977-PA, isoform A; A 96.3 0.052 1.8E-06 53.4 14.0 149 2-172 63-232 (297)
207 4b4t_H 26S protease regulatory 96.1 0.045 1.5E-06 56.2 12.5 142 2-166 252-415 (467)
208 4b4t_M 26S protease regulatory 96.1 0.0085 2.9E-07 61.6 7.2 140 2-166 224-387 (434)
209 3cf0_A Transitional endoplasmi 96.1 0.056 1.9E-06 53.2 13.1 142 2-168 58-223 (301)
210 4b4t_L 26S protease subunit RP 96.1 0.021 7.2E-07 58.7 10.1 140 2-166 224-387 (437)
211 4b4t_I 26S protease regulatory 96.0 0.083 2.8E-06 53.7 13.7 140 2-166 225-388 (437)
212 2gno_A DNA polymerase III, gam 95.9 0.021 7.3E-07 56.1 8.6 122 2-142 27-152 (305)
213 1lv7_A FTSH; alpha/beta domain 95.6 0.082 2.8E-06 50.6 11.4 147 2-171 54-223 (257)
214 4b4t_K 26S protease regulatory 95.4 0.085 2.9E-06 54.1 11.3 140 2-166 215-379 (428)
215 3n70_A Transport activator; si 95.1 0.0064 2.2E-07 52.6 1.5 16 2-17 33-48 (145)
216 2ce7_A Cell division protein F 95.1 0.16 5.6E-06 53.0 12.3 142 2-166 58-221 (476)
217 2r62_A Cell division protease 94.4 0.035 1.2E-06 53.6 5.1 71 73-143 103-197 (268)
218 4fcw_A Chaperone protein CLPB; 94.4 0.11 3.8E-06 51.3 8.9 76 2-85 56-131 (311)
219 3hu3_A Transitional endoplasmi 94.4 0.22 7.7E-06 52.4 11.5 141 2-165 247-406 (489)
220 2p65_A Hypothetical protein PF 94.4 0.049 1.7E-06 49.0 5.8 17 2-18 52-68 (187)
221 1pgv_A TMD-1, tropomodulin TMD 94.3 0.058 2E-06 48.7 5.9 110 361-470 36-168 (197)
222 1ofh_A ATP-dependent HSL prote 94.2 0.18 6.2E-06 49.6 9.9 19 122-140 195-213 (310)
223 1qvr_A CLPB protein; coiled co 94.1 0.12 4.2E-06 59.0 9.3 125 2-142 200-345 (854)
224 3pxg_A Negative regulator of g 94.0 0.14 4.8E-06 53.9 8.9 118 2-142 210-338 (468)
225 3t15_A Ribulose bisphosphate c 93.9 0.39 1.3E-05 46.8 11.4 17 2-18 45-61 (293)
226 1pgv_A TMD-1, tropomodulin TMD 93.7 0.083 2.8E-06 47.7 5.6 103 342-444 41-167 (197)
227 2cvh_A DNA repair and recombin 93.7 0.19 6.5E-06 46.6 8.5 35 2-41 29-63 (220)
228 1ixz_A ATP-dependent metallopr 93.6 0.53 1.8E-05 44.7 11.7 142 2-166 58-221 (254)
229 3cf2_A TER ATPase, transitiona 93.6 0.18 6.3E-06 56.1 9.2 140 2-166 247-407 (806)
230 2vhj_A Ntpase P4, P4; non- hyd 93.3 0.057 2E-06 52.7 4.2 62 1-85 131-194 (331)
231 3rfe_A Platelet glycoprotein I 93.3 0.14 4.6E-06 43.0 6.0 50 370-421 12-65 (130)
232 2kjq_A DNAA-related protein; s 93.2 0.036 1.2E-06 47.9 2.3 29 2-32 45-73 (149)
233 2qgz_A Helicase loader, putati 93.0 0.029 9.9E-07 55.4 1.6 17 2-18 161-177 (308)
234 3io5_A Recombination and repai 93.0 0.36 1.2E-05 46.9 9.1 79 2-85 37-123 (333)
235 1n0w_A DNA repair protein RAD5 92.9 0.42 1.5E-05 44.9 9.7 82 2-84 33-130 (243)
236 2x8a_A Nuclear valosin-contain 92.7 0.87 3E-05 43.8 11.7 120 2-142 53-191 (274)
237 1iy2_A ATP-dependent metallopr 92.6 0.94 3.2E-05 43.7 11.9 142 2-166 82-245 (278)
238 1g5t_A COB(I)alamin adenosyltr 92.6 0.25 8.5E-06 44.4 6.9 104 2-111 37-163 (196)
239 3rfe_A Platelet glycoprotein I 92.6 0.19 6.3E-06 42.2 5.8 53 346-401 12-67 (130)
240 1sky_E F1-ATPase, F1-ATP synth 92.5 0.27 9.2E-06 50.8 8.0 81 2-83 160-255 (473)
241 2i1q_A DNA repair and recombin 92.4 0.35 1.2E-05 47.9 8.7 81 2-83 107-214 (322)
242 2z43_A DNA repair and recombin 92.4 0.42 1.4E-05 47.4 9.1 82 2-84 116-214 (324)
243 3pxi_A Negative regulator of g 92.1 0.089 3E-06 59.3 4.2 119 2-142 530-675 (758)
244 3m6a_A ATP-dependent protease 92.1 0.35 1.2E-05 51.8 8.6 17 2-18 117-133 (543)
245 1v5w_A DMC1, meiotic recombina 92.0 0.63 2.1E-05 46.5 9.9 48 2-50 131-182 (343)
246 2w0m_A SSO2452; RECA, SSPF, un 91.9 0.26 8.8E-06 46.1 6.6 38 2-43 32-69 (235)
247 3hr8_A Protein RECA; alpha and 91.5 0.58 2E-05 46.7 8.9 77 2-85 70-151 (356)
248 2ck3_D ATP synthase subunit be 91.5 0.65 2.2E-05 47.8 9.3 81 2-83 162-263 (482)
249 1fx0_B ATP synthase beta chain 91.3 0.58 2E-05 48.4 8.8 81 2-83 174-276 (498)
250 2dhr_A FTSH; AAA+ protein, hex 91.2 0.87 3E-05 47.8 10.3 142 2-166 73-236 (499)
251 1xp8_A RECA protein, recombina 91.0 0.64 2.2E-05 46.7 8.7 76 2-84 83-163 (366)
252 3pxi_A Negative regulator of g 91.0 0.35 1.2E-05 54.4 7.6 118 2-142 210-338 (758)
253 3ice_A Transcription terminati 90.9 0.2 6.9E-06 50.0 4.7 82 2-84 183-272 (422)
254 3lw7_A Adenylate kinase relate 90.8 0.25 8.4E-06 43.8 5.0 13 1-13 9-21 (179)
255 1u94_A RECA protein, recombina 90.6 0.72 2.5E-05 46.2 8.6 76 2-84 72-152 (356)
256 1in4_A RUVB, holliday junction 90.5 1.2 4E-05 44.3 10.2 49 123-172 174-222 (334)
257 3co5_A Putative two-component 90.5 0.035 1.2E-06 47.7 -1.0 16 2-17 36-51 (143)
258 2zr9_A Protein RECA, recombina 90.0 0.9 3.1E-05 45.4 8.7 76 2-84 70-150 (349)
259 3vr4_D V-type sodium ATPase su 90.0 0.58 2E-05 47.9 7.3 82 2-83 160-258 (465)
260 3lda_A DNA repair protein RAD5 89.8 1.2 4.2E-05 45.3 9.7 81 2-83 187-283 (400)
261 3gqb_B V-type ATP synthase bet 89.6 0.57 1.9E-05 47.9 6.9 82 2-83 156-261 (464)
262 1r6b_X CLPA protein; AAA+, N-t 89.5 1.2 4E-05 50.2 10.2 126 2-142 216-362 (758)
263 2c61_A A-type ATP synthase non 89.3 0.63 2.2E-05 47.9 7.0 82 2-83 161-259 (469)
264 1jr3_D DNA polymerase III, del 89.2 2.9 0.0001 41.6 12.0 99 72-171 75-183 (343)
265 2c9o_A RUVB-like 1; hexameric 88.6 1.2 4.1E-05 46.5 8.9 49 123-172 360-409 (456)
266 3bh0_A DNAB-like replicative h 88.5 1.3 4.4E-05 43.6 8.6 42 2-47 77-118 (315)
267 2bjv_A PSP operon transcriptio 88.4 0.15 5.1E-06 49.0 1.7 30 2-33 38-67 (265)
268 1r6b_X CLPA protein; AAA+, N-t 87.3 0.44 1.5E-05 53.7 4.9 16 2-17 497-512 (758)
269 4a74_A DNA repair and recombin 87.1 3.1 0.00011 38.4 10.0 36 2-37 34-73 (231)
270 3l0o_A Transcription terminati 85.9 0.26 9E-06 49.1 1.7 82 2-84 184-273 (427)
271 1qhx_A CPT, protein (chloramph 85.3 0.37 1.3E-05 42.8 2.4 18 1-18 11-28 (178)
272 3mfy_A V-type ATP synthase alp 84.6 1.6 5.3E-05 45.8 6.8 39 2-44 236-275 (588)
273 3hjn_A DTMP kinase, thymidylat 84.2 3.2 0.00011 37.4 8.2 19 2-20 9-27 (197)
274 4a1f_A DNAB helicase, replicat 83.4 3.5 0.00012 40.7 8.6 43 2-48 55-97 (338)
275 1pzn_A RAD51, DNA repair and r 83.1 4.1 0.00014 40.6 9.2 46 2-48 140-189 (349)
276 2r9v_A ATP synthase subunit al 83.1 1.8 6.2E-05 44.8 6.6 79 2-84 184-278 (515)
277 2qe7_A ATP synthase subunit al 82.9 2 6.9E-05 44.5 6.8 78 2-83 171-264 (502)
278 2ck3_A ATP synthase subunit al 82.3 2.6 8.7E-05 43.8 7.3 83 2-84 171-273 (510)
279 3kb2_A SPBC2 prophage-derived 82.0 0.61 2.1E-05 41.0 2.3 18 1-18 9-26 (173)
280 2dr3_A UPF0273 protein PH0284; 81.9 3.6 0.00012 38.5 7.9 39 2-44 32-70 (247)
281 1fx0_A ATP synthase alpha chai 81.6 1.9 6.4E-05 44.8 6.0 78 2-83 172-265 (507)
282 3cwq_A Para family chromosome 81.4 1.5 5E-05 40.2 4.8 34 2-38 10-43 (209)
283 3oaa_A ATP synthase subunit al 81.3 2.7 9.2E-05 43.5 7.0 79 2-84 171-265 (513)
284 1ly1_A Polynucleotide kinase; 80.5 0.71 2.4E-05 40.9 2.2 15 1-15 10-24 (181)
285 4eun_A Thermoresistant glucoki 80.5 3.1 0.00011 37.6 6.6 17 1-17 37-53 (200)
286 3trf_A Shikimate kinase, SK; a 80.5 0.76 2.6E-05 41.0 2.4 17 1-17 13-29 (185)
287 2zts_A Putative uncharacterize 80.4 3 0.0001 39.0 6.9 41 2-45 39-79 (251)
288 3vaa_A Shikimate kinase, SK; s 80.3 0.78 2.7E-05 41.6 2.5 17 1-17 33-49 (199)
289 2ehv_A Hypothetical protein PH 80.0 4.2 0.00015 38.0 7.8 15 2-16 39-53 (251)
290 1via_A Shikimate kinase; struc 79.8 0.84 2.9E-05 40.3 2.5 18 1-18 12-29 (175)
291 1nks_A Adenylate kinase; therm 79.5 0.87 3E-05 40.9 2.5 18 1-18 9-26 (194)
292 3vr4_A V-type sodium ATPase ca 79.4 2 6.9E-05 45.1 5.3 39 2-44 241-280 (600)
293 3iij_A Coilin-interacting nucl 78.9 0.91 3.1E-05 40.3 2.4 17 1-17 19-35 (180)
294 2px0_A Flagellar biosynthesis 78.9 3.7 0.00013 39.8 6.9 18 2-19 114-131 (296)
295 2rhm_A Putative kinase; P-loop 78.8 0.91 3.1E-05 40.8 2.4 17 1-17 13-29 (193)
296 1kht_A Adenylate kinase; phosp 78.7 0.96 3.3E-05 40.5 2.5 18 1-18 11-28 (192)
297 1qvr_A CLPB protein; coiled co 78.5 1.1 3.7E-05 51.1 3.4 17 2-18 597-613 (854)
298 1zuh_A Shikimate kinase; alpha 78.4 0.96 3.3E-05 39.6 2.4 18 1-18 15-32 (168)
299 3sr0_A Adenylate kinase; phosp 77.9 3.7 0.00013 37.3 6.2 17 2-18 9-25 (206)
300 1kag_A SKI, shikimate kinase I 77.8 0.97 3.3E-05 39.7 2.2 17 1-17 12-28 (173)
301 2q6t_A DNAB replication FORK h 77.8 5.5 0.00019 41.3 8.3 43 2-47 209-251 (444)
302 4dzz_A Plasmid partitioning pr 77.6 2.1 7.1E-05 38.8 4.5 34 2-37 11-44 (206)
303 3t61_A Gluconokinase; PSI-biol 77.5 1 3.6E-05 40.8 2.4 17 1-17 26-42 (202)
304 2jaq_A Deoxyguanosine kinase; 77.2 1.1 3.7E-05 40.7 2.5 18 1-18 8-25 (205)
305 1zp6_A Hypothetical protein AT 76.8 0.99 3.4E-05 40.5 2.0 16 1-16 17-32 (191)
306 2r8r_A Sensor protein; KDPD, P 76.8 2.9 0.0001 38.4 5.1 33 2-36 15-47 (228)
307 2r6a_A DNAB helicase, replicat 76.8 6 0.0002 41.1 8.3 42 2-46 212-253 (454)
308 3cmu_A Protein RECA, recombina 76.5 3.5 0.00012 50.6 7.1 75 2-83 1436-1515(2050)
309 2yvu_A Probable adenylyl-sulfa 76.3 1.2 4.2E-05 39.7 2.5 19 1-19 21-39 (186)
310 3cm0_A Adenylate kinase; ATP-b 76.1 1.2 4.2E-05 39.6 2.5 17 1-17 12-28 (186)
311 1y63_A LMAJ004144AAA protein; 76.1 1.2 4.1E-05 39.8 2.3 16 1-16 18-33 (184)
312 2iyv_A Shikimate kinase, SK; t 76.1 1.2 4.2E-05 39.6 2.4 18 1-18 10-27 (184)
313 1e6c_A Shikimate kinase; phosp 75.9 1.2 4.2E-05 39.0 2.4 18 1-18 10-27 (173)
314 2pt5_A Shikimate kinase, SK; a 75.8 1.3 4.4E-05 38.7 2.5 18 1-18 8-25 (168)
315 3bgw_A DNAB-like replicative h 75.8 6.7 0.00023 40.5 8.2 42 2-47 206-247 (444)
316 3cf2_A TER ATPase, transitiona 75.7 2.2 7.4E-05 47.6 4.7 121 2-143 520-662 (806)
317 2vli_A Antibiotic resistance p 75.6 0.95 3.3E-05 40.2 1.5 18 1-18 13-30 (183)
318 2b8t_A Thymidine kinase; deoxy 75.3 0.93 3.2E-05 41.8 1.4 103 2-112 21-127 (223)
319 3ld9_A DTMP kinase, thymidylat 75.2 8.2 0.00028 35.5 7.8 46 1-46 29-74 (223)
320 2ze6_A Isopentenyl transferase 75.2 1.3 4.5E-05 41.9 2.5 18 1-18 9-26 (253)
321 1tev_A UMP-CMP kinase; ploop, 74.9 1.4 4.7E-05 39.6 2.5 17 1-17 11-27 (196)
322 2plr_A DTMP kinase, probable t 74.6 1.4 4.8E-05 40.2 2.5 19 1-19 12-30 (213)
323 3kjh_A CO dehydrogenase/acetyl 74.6 2.4 8.3E-05 39.8 4.3 36 2-39 9-44 (254)
324 2cdn_A Adenylate kinase; phosp 74.3 1.5 5E-05 39.8 2.5 17 1-17 28-44 (201)
325 1ls1_A Signal recognition part 74.2 7.5 0.00026 37.6 7.7 28 2-31 107-134 (295)
326 3a4m_A L-seryl-tRNA(SEC) kinas 74.1 1.4 4.8E-05 41.9 2.4 18 1-18 12-29 (260)
327 1knq_A Gluconate kinase; ALFA/ 74.0 1.4 4.7E-05 38.8 2.2 17 1-17 16-32 (175)
328 2xxa_A Signal recognition part 74.0 8.6 0.00029 39.5 8.4 19 2-20 109-127 (433)
329 2c95_A Adenylate kinase 1; tra 73.8 1.5 5.2E-05 39.4 2.5 17 1-17 17-33 (196)
330 1aky_A Adenylate kinase; ATP:A 73.4 1.6 5.3E-05 40.3 2.5 17 1-17 12-28 (220)
331 1q57_A DNA primase/helicase; d 73.3 8.3 0.00028 40.7 8.4 43 2-47 251-293 (503)
332 1ypw_A Transitional endoplasmi 73.2 2.5 8.6E-05 47.6 4.5 121 2-143 247-386 (806)
333 2qor_A Guanylate kinase; phosp 73.2 1.6 5.3E-05 39.7 2.4 17 1-17 20-36 (204)
334 3uie_A Adenylyl-sulfate kinase 73.0 1.5 5.1E-05 39.7 2.2 18 1-18 33-50 (200)
335 1vma_A Cell division protein F 73.0 7.9 0.00027 37.6 7.5 28 2-31 113-140 (306)
336 1j8m_F SRP54, signal recogniti 72.9 7.6 0.00026 37.6 7.3 81 2-84 107-191 (297)
337 3gqb_A V-type ATP synthase alp 72.8 1.9 6.4E-05 45.1 3.0 39 2-44 230-269 (578)
338 3zq6_A Putative arsenical pump 72.7 3.9 0.00013 40.3 5.3 37 2-40 23-59 (324)
339 2bwj_A Adenylate kinase 5; pho 72.6 1.7 5.8E-05 39.2 2.5 18 1-18 20-37 (199)
340 2pbr_A DTMP kinase, thymidylat 72.2 1.7 5.9E-05 38.9 2.4 18 1-18 8-25 (195)
341 1zak_A Adenylate kinase; ATP:A 71.7 1.8 6.1E-05 40.0 2.4 18 1-18 13-30 (222)
342 1zd8_A GTP:AMP phosphotransfer 71.6 1.8 6E-05 40.2 2.4 17 1-17 15-31 (227)
343 3fb4_A Adenylate kinase; psych 71.5 1.8 6.2E-05 39.7 2.4 17 1-17 8-24 (216)
344 2z0h_A DTMP kinase, thymidylat 71.5 5 0.00017 35.8 5.4 19 1-19 8-26 (197)
345 3be4_A Adenylate kinase; malar 71.5 1.8 6.3E-05 39.7 2.5 17 1-17 13-29 (217)
346 2bdt_A BH3686; alpha-beta prot 71.4 1.7 5.9E-05 38.8 2.2 15 1-15 10-24 (189)
347 3iqw_A Tail-anchored protein t 71.1 3.7 0.00013 40.6 4.7 35 2-38 25-59 (334)
348 1qf9_A UMP/CMP kinase, protein 70.7 1.9 6.5E-05 38.5 2.3 17 1-17 14-30 (194)
349 1ukz_A Uridylate kinase; trans 70.6 1.9 6.5E-05 39.0 2.3 17 1-17 23-39 (203)
350 1e4v_A Adenylate kinase; trans 70.5 2 6.7E-05 39.4 2.4 17 1-17 8-24 (214)
351 2wwf_A Thymidilate kinase, put 70.5 2 6.8E-05 39.2 2.5 24 1-25 18-41 (212)
352 3kl4_A SRP54, signal recogniti 70.2 7.4 0.00025 39.8 6.8 19 2-20 106-124 (433)
353 2if2_A Dephospho-COA kinase; a 70.1 1.9 6.6E-05 39.1 2.2 15 1-15 9-23 (204)
354 3dm5_A SRP54, signal recogniti 69.8 8.4 0.00029 39.5 7.1 18 2-19 109-126 (443)
355 3dl0_A Adenylate kinase; phosp 69.8 1.9 6.6E-05 39.5 2.2 17 1-17 8-24 (216)
356 1ak2_A Adenylate kinase isoenz 69.8 2.1 7.1E-05 39.9 2.5 18 1-18 24-41 (233)
357 1ye8_A Protein THEP1, hypothet 69.8 1.9 6.6E-05 38.2 2.1 18 2-19 9-26 (178)
358 1cp2_A CP2, nitrogenase iron p 69.8 4 0.00014 38.8 4.6 30 2-33 10-39 (269)
359 1cr0_A DNA primase/helicase; R 69.7 6.4 0.00022 38.1 6.1 41 2-46 44-85 (296)
360 1odf_A YGR205W, hypothetical 3 69.6 10 0.00036 36.4 7.4 18 2-19 40-57 (290)
361 1nn5_A Similar to deoxythymidy 69.4 2.2 7.4E-05 39.0 2.5 24 1-25 17-40 (215)
362 2xb4_A Adenylate kinase; ATP-b 69.3 2.2 7.5E-05 39.4 2.5 17 1-17 8-24 (223)
363 4tmk_A Protein (thymidylate ki 69.3 6.5 0.00022 35.9 5.6 45 1-46 11-55 (213)
364 3lv8_A DTMP kinase, thymidylat 69.3 6.2 0.00021 36.6 5.5 28 1-29 35-62 (236)
365 1gvn_B Zeta; postsegregational 69.0 1.8 6.2E-05 41.9 1.9 17 1-17 41-57 (287)
366 3cmw_A Protein RECA, recombina 68.9 8.5 0.00029 46.6 7.8 77 2-85 741-822 (1706)
367 2ffh_A Protein (FFH); SRP54, s 68.9 9.4 0.00032 39.0 7.2 19 2-20 107-125 (425)
368 1yrb_A ATP(GTP)binding protein 68.8 2.3 8E-05 40.3 2.6 17 2-18 23-39 (262)
369 2pez_A Bifunctional 3'-phospho 68.5 2.2 7.6E-05 37.7 2.2 18 1-18 13-30 (179)
370 2xj4_A MIPZ; replication, cell 68.2 4.6 0.00016 38.9 4.6 36 2-39 14-50 (286)
371 1m7g_A Adenylylsulfate kinase; 67.9 2.5 8.4E-05 38.6 2.5 18 1-18 33-50 (211)
372 2afh_E Nitrogenase iron protei 67.7 4.6 0.00016 38.9 4.6 31 2-34 11-41 (289)
373 1kgd_A CASK, peripheral plasma 67.7 2.2 7.7E-05 37.7 2.1 17 2-18 14-30 (180)
374 3ug7_A Arsenical pump-driving 67.7 4.5 0.00015 40.3 4.5 18 2-19 35-52 (349)
375 3k9g_A PF-32 protein; ssgcid, 67.6 4.2 0.00014 38.6 4.2 32 2-36 37-68 (267)
376 2v54_A DTMP kinase, thymidylat 67.5 2.4 8E-05 38.4 2.2 17 1-17 12-28 (204)
377 1xjc_A MOBB protein homolog; s 67.1 2.9 9.9E-05 36.5 2.6 18 2-19 13-30 (169)
378 2grj_A Dephospho-COA kinase; T 66.8 2.6 8.9E-05 37.8 2.3 16 1-16 20-35 (192)
379 3end_A Light-independent proto 66.7 5.7 0.0002 38.7 5.0 32 2-35 50-81 (307)
380 2bbw_A Adenylate kinase 4, AK4 66.2 2.7 9.3E-05 39.5 2.5 17 1-17 35-51 (246)
381 1jjv_A Dephospho-COA kinase; P 66.1 2.4 8.1E-05 38.5 2.0 15 1-15 10-24 (206)
382 3io3_A DEHA2D07832P; chaperone 66.1 5.2 0.00018 39.7 4.6 36 2-38 27-63 (348)
383 3nwj_A ATSK2; P loop, shikimat 65.9 2.6 8.9E-05 39.7 2.2 18 1-18 56-73 (250)
384 2j41_A Guanylate kinase; GMP, 65.7 2.6 9E-05 38.1 2.2 17 1-17 14-30 (207)
385 3cmu_A Protein RECA, recombina 65.5 9.8 0.00034 46.8 7.5 76 2-84 392-472 (2050)
386 3fkq_A NTRC-like two-domain pr 65.4 5.8 0.0002 39.9 4.9 34 2-37 153-186 (373)
387 1cke_A CK, MSSA, protein (cyti 65.4 2.9 9.9E-05 38.6 2.5 17 1-17 13-29 (227)
388 3v9p_A DTMP kinase, thymidylat 65.3 11 0.00038 34.7 6.3 19 1-19 33-51 (227)
389 3tlx_A Adenylate kinase 2; str 65.2 2.9 0.0001 39.2 2.5 17 1-17 37-53 (243)
390 3c8u_A Fructokinase; YP_612366 65.2 2.2 7.6E-05 38.8 1.6 18 2-19 31-48 (208)
391 2ph1_A Nucleotide-binding prot 65.2 3 0.0001 39.6 2.5 31 2-34 28-58 (262)
392 3ea0_A ATPase, para family; al 65.1 2.9 0.0001 39.1 2.5 30 2-32 14-43 (245)
393 1htw_A HI0065; nucleotide-bind 65.0 2.7 9.2E-05 36.3 2.0 16 2-17 42-57 (158)
394 1uf9_A TT1252 protein; P-loop, 64.9 2.8 9.7E-05 37.8 2.2 16 1-16 16-31 (203)
395 4gp7_A Metallophosphoesterase; 64.9 2.1 7.1E-05 37.6 1.3 13 2-14 18-30 (171)
396 1tue_A Replication protein E1; 64.7 2.5 8.5E-05 38.1 1.7 17 2-18 67-83 (212)
397 3tr0_A Guanylate kinase, GMP k 64.6 2.7 9.4E-05 38.0 2.1 16 2-17 16-31 (205)
398 3q9l_A Septum site-determining 64.6 6.3 0.00022 37.1 4.8 35 2-38 12-47 (260)
399 1g3q_A MIND ATPase, cell divis 64.0 5.2 0.00018 37.1 4.0 30 2-33 12-41 (237)
400 2woo_A ATPase GET3; tail-ancho 63.8 6.2 0.00021 38.9 4.6 30 2-33 28-57 (329)
401 2p5t_B PEZT; postsegregational 63.6 2.2 7.5E-05 40.4 1.2 17 1-17 40-56 (253)
402 2oze_A ORF delta'; para, walke 63.5 6.5 0.00022 38.0 4.7 32 2-35 46-77 (298)
403 1byi_A Dethiobiotin synthase; 63.4 3.5 0.00012 37.9 2.6 19 2-20 11-29 (224)
404 1wcv_1 SOJ, segregation protei 63.4 4.4 0.00015 38.3 3.4 30 2-33 16-45 (257)
405 2qt1_A Nicotinamide riboside k 63.3 2.9 9.9E-05 38.0 2.0 15 2-16 30-44 (207)
406 2woj_A ATPase GET3; tail-ancho 62.9 8 0.00027 38.5 5.3 37 2-40 27-65 (354)
407 4edh_A DTMP kinase, thymidylat 62.9 9.8 0.00034 34.6 5.5 24 1-25 14-37 (213)
408 3asz_A Uridine kinase; cytidin 62.8 3.1 0.00011 37.9 2.1 17 2-18 15-31 (211)
409 1ltq_A Polynucleotide kinase; 62.6 3.2 0.00011 40.4 2.2 16 1-16 10-25 (301)
410 1gtv_A TMK, thymidylate kinase 62.5 2.6 8.9E-05 38.4 1.5 18 2-19 9-26 (214)
411 3tau_A Guanylate kinase, GMP k 61.9 3.3 0.00011 37.7 2.1 17 2-18 17-33 (208)
412 1ex7_A Guanylate kinase; subst 61.9 3.2 0.00011 36.9 1.9 17 2-18 10-26 (186)
413 3a00_A Guanylate kinase, GMP k 61.7 3.4 0.00012 36.8 2.1 17 2-18 10-26 (186)
414 3fwy_A Light-independent proto 61.7 3.1 0.00011 40.7 1.9 29 2-32 57-85 (314)
415 4eaq_A DTMP kinase, thymidylat 61.6 5.6 0.00019 36.8 3.6 19 1-19 34-52 (229)
416 3pg5_A Uncharacterized protein 61.4 6.4 0.00022 39.4 4.3 35 2-38 11-45 (361)
417 1vht_A Dephospho-COA kinase; s 61.4 3.6 0.00012 37.7 2.2 15 1-15 12-26 (218)
418 1hyq_A MIND, cell division inh 60.8 7.9 0.00027 36.5 4.7 30 2-33 12-41 (263)
419 1uj2_A Uridine-cytidine kinase 60.7 3.6 0.00012 38.8 2.2 18 1-18 30-47 (252)
420 1rz3_A Hypothetical protein rb 60.7 3.6 0.00012 37.2 2.1 17 2-18 31-47 (201)
421 3ake_A Cytidylate kinase; CMP 60.2 4.1 0.00014 36.8 2.4 18 1-18 10-27 (208)
422 2orv_A Thymidine kinase; TP4A 60.1 5.7 0.0002 36.5 3.3 96 3-112 29-127 (234)
423 3tqc_A Pantothenate kinase; bi 59.4 19 0.00065 35.1 7.1 17 2-18 101-117 (321)
424 2ga8_A Hypothetical 39.9 kDa p 59.4 4.4 0.00015 40.1 2.5 19 1-19 32-50 (359)
425 4hlc_A DTMP kinase, thymidylat 59.4 6 0.0002 35.9 3.3 17 2-18 11-27 (205)
426 3gmt_A Adenylate kinase; ssgci 58.6 4.7 0.00016 37.2 2.5 18 1-18 16-33 (230)
427 4e22_A Cytidylate kinase; P-lo 58.5 4.4 0.00015 38.2 2.4 17 1-17 35-51 (252)
428 2jeo_A Uridine-cytidine kinase 58.5 4 0.00014 38.2 2.1 16 2-17 34-49 (245)
429 2i3b_A HCR-ntpase, human cance 58.4 4.7 0.00016 36.0 2.4 17 2-18 10-26 (189)
430 1lvg_A Guanylate kinase, GMP k 58.1 4.3 0.00015 36.6 2.1 17 2-18 13-29 (198)
431 3r20_A Cytidylate kinase; stru 57.8 4.9 0.00017 37.2 2.5 18 1-18 17-34 (233)
432 1znw_A Guanylate kinase, GMP k 57.8 4.3 0.00015 36.8 2.1 16 2-17 29-44 (207)
433 2hf9_A Probable hydrogenase ni 57.7 4.5 0.00015 37.2 2.2 17 2-18 47-63 (226)
434 3ez2_A Plasmid partition prote 57.4 9.3 0.00032 38.8 4.8 17 2-18 118-134 (398)
435 3hws_A ATP-dependent CLP prote 57.4 4.3 0.00015 40.7 2.2 16 2-17 60-75 (363)
436 1np6_A Molybdopterin-guanine d 57.2 5.2 0.00018 35.1 2.4 18 2-19 15-32 (174)
437 3umf_A Adenylate kinase; rossm 57.2 4.8 0.00017 36.8 2.3 17 2-18 38-54 (217)
438 3igf_A ALL4481 protein; two-do 57.0 5.7 0.00019 39.8 2.9 35 2-39 11-45 (374)
439 2ocp_A DGK, deoxyguanosine kin 56.8 4.9 0.00017 37.5 2.4 17 1-17 10-26 (241)
440 2f6r_A COA synthase, bifunctio 56.7 4.5 0.00015 38.9 2.1 14 1-14 83-96 (281)
441 1um8_A ATP-dependent CLP prote 56.6 4.3 0.00015 40.9 2.1 16 2-17 81-96 (376)
442 3aez_A Pantothenate kinase; tr 56.2 4.6 0.00016 39.5 2.1 18 2-19 99-116 (312)
443 2ce2_X GTPase HRAS; signaling 55.7 4.6 0.00016 34.5 1.8 15 2-16 12-26 (166)
444 1z6g_A Guanylate kinase; struc 55.5 4.9 0.00017 36.8 2.1 16 2-17 32-47 (218)
445 3ney_A 55 kDa erythrocyte memb 55.3 5.4 0.00018 35.8 2.2 17 2-18 28-44 (197)
446 2fz4_A DNA repair protein RAD2 54.8 22 0.00076 32.8 6.6 16 2-17 117-132 (237)
447 3e70_C DPA, signal recognition 54.5 27 0.00091 34.2 7.3 47 2-50 138-185 (328)
448 3zvl_A Bifunctional polynucleo 54.5 4.6 0.00016 41.4 1.9 17 1-17 266-282 (416)
449 2r44_A Uncharacterized protein 54.5 4.1 0.00014 40.3 1.4 21 123-143 179-199 (331)
450 2f1r_A Molybdopterin-guanine d 54.4 4 0.00014 35.8 1.2 19 2-20 11-29 (171)
451 2j37_W Signal recognition part 54.3 25 0.00086 36.7 7.4 18 2-19 110-127 (504)
452 1g8f_A Sulfate adenylyltransfe 54.2 5.5 0.00019 41.8 2.4 19 1-19 403-421 (511)
453 1oix_A RAS-related protein RAB 53.9 5.5 0.00019 35.5 2.1 16 2-17 38-53 (191)
454 3cmw_A Protein RECA, recombina 53.8 23 0.00077 43.0 7.7 76 2-84 1440-1520(1706)
455 4akg_A Glutathione S-transfera 53.5 17 0.0006 46.3 7.0 71 2-83 1276-1346(2695)
456 3crm_A TRNA delta(2)-isopenten 53.3 6.1 0.00021 38.6 2.4 17 1-17 13-29 (323)
457 2wsm_A Hydrogenase expression/ 53.2 5.9 0.0002 36.2 2.2 17 2-18 39-55 (221)
458 1s96_A Guanylate kinase, GMP k 53.1 5.7 0.0002 36.4 2.1 17 2-18 25-41 (219)
459 2dyk_A GTP-binding protein; GT 53.1 5.8 0.0002 33.8 2.1 15 2-16 10-24 (161)
460 1ojl_A Transcriptional regulat 52.1 5.8 0.0002 38.6 2.1 16 2-17 34-49 (304)
461 1zu4_A FTSY; GTPase, signal re 51.9 11 0.00037 36.9 4.0 28 2-31 114-141 (320)
462 2f9l_A RAB11B, member RAS onco 51.9 6.1 0.00021 35.4 2.1 15 2-16 14-28 (199)
463 1nlf_A Regulatory protein REPA 51.8 5.7 0.00019 38.1 1.9 17 2-18 39-55 (279)
464 1p6x_A Thymidine kinase; P-loo 51.6 5.8 0.0002 39.0 1.9 17 3-19 17-33 (334)
465 3con_A GTPase NRAS; structural 51.1 6.4 0.00022 34.8 2.1 15 2-16 30-44 (190)
466 1g8p_A Magnesium-chelatase 38 51.1 4 0.00014 40.6 0.7 17 2-18 54-70 (350)
467 3nbx_X ATPase RAVA; AAA+ ATPas 51.1 4.2 0.00014 42.7 0.9 17 2-18 50-66 (500)
468 1rj9_A FTSY, signal recognitio 50.8 7.2 0.00025 37.9 2.5 18 2-19 111-128 (304)
469 1ihu_A Arsenical pump-driving 50.8 13 0.00044 40.1 4.7 29 2-32 17-45 (589)
470 2axn_A 6-phosphofructo-2-kinas 50.4 6.9 0.00024 41.4 2.5 18 1-18 43-60 (520)
471 2orw_A Thymidine kinase; TMTK, 50.2 8.3 0.00028 34.2 2.6 38 73-112 76-114 (184)
472 2onk_A Molybdate/tungstate ABC 50.2 6.4 0.00022 36.7 1.9 16 2-17 33-48 (240)
473 1z2a_A RAS-related protein RAB 50.1 6.9 0.00024 33.5 2.1 15 2-16 14-28 (168)
474 3b85_A Phosphate starvation-in 49.9 5.2 0.00018 36.4 1.2 15 2-16 31-45 (208)
475 3d3q_A TRNA delta(2)-isopenten 49.7 7.1 0.00024 38.4 2.2 17 2-18 16-32 (340)
476 3kta_A Chromosome segregation 49.7 6.4 0.00022 34.6 1.8 16 2-17 35-50 (182)
477 2wji_A Ferrous iron transport 49.4 6.3 0.00022 34.0 1.7 15 2-16 12-26 (165)
478 1bif_A 6-phosphofructo-2-kinas 49.2 7.2 0.00025 40.7 2.4 18 1-18 47-64 (469)
479 2pcj_A ABC transporter, lipopr 49.1 5.8 0.0002 36.6 1.4 16 2-17 39-54 (224)
480 1q3t_A Cytidylate kinase; nucl 48.8 7.4 0.00025 36.1 2.2 17 1-17 24-40 (236)
481 3b9q_A Chloroplast SRP recepto 48.7 8 0.00027 37.5 2.4 18 2-19 109-126 (302)
482 1sq5_A Pantothenate kinase; P- 48.4 7.2 0.00025 38.0 2.1 17 2-18 89-105 (308)
483 2zej_A Dardarin, leucine-rich 47.9 7 0.00024 34.4 1.8 15 2-16 11-25 (184)
484 2eyu_A Twitching motility prot 47.6 13 0.00044 35.1 3.7 18 2-19 34-51 (261)
485 2d2e_A SUFC protein; ABC-ATPas 47.6 7.4 0.00025 36.5 1.9 15 2-16 38-52 (250)
486 2wjg_A FEOB, ferrous iron tran 47.3 7.5 0.00026 34.2 1.9 15 2-16 16-30 (188)
487 1u8z_A RAS-related protein RAL 47.1 8.2 0.00028 33.0 2.1 16 2-17 13-28 (168)
488 1x6v_B Bifunctional 3'-phospho 46.8 8.2 0.00028 41.6 2.3 18 1-18 60-77 (630)
489 1r8s_A ADP-ribosylation factor 46.8 8.8 0.0003 32.7 2.2 15 2-16 9-23 (164)
490 3tif_A Uncharacterized ABC tra 46.8 7.4 0.00025 36.1 1.8 16 2-17 40-55 (235)
491 1sgw_A Putative ABC transporte 46.8 6.7 0.00023 35.8 1.4 16 2-17 44-59 (214)
492 1g41_A Heat shock protein HSLU 46.6 8.6 0.00029 39.4 2.4 18 2-19 59-76 (444)
493 3tmk_A Thymidylate kinase; pho 46.5 9.4 0.00032 34.9 2.4 19 1-19 13-31 (216)
494 2h92_A Cytidylate kinase; ross 46.4 8.7 0.0003 35.0 2.2 17 1-17 11-27 (219)
495 2zu0_C Probable ATP-dependent 46.4 7.9 0.00027 36.8 1.9 15 2-16 55-69 (267)
496 1p5z_B DCK, deoxycytidine kina 45.9 4.6 0.00016 38.3 0.2 16 2-17 33-48 (263)
497 3tqf_A HPR(Ser) kinase; transf 45.9 9 0.00031 33.4 2.0 15 2-16 25-39 (181)
498 2cbz_A Multidrug resistance-as 45.9 6.9 0.00024 36.4 1.4 16 2-17 40-55 (237)
499 3lnc_A Guanylate kinase, GMP k 45.8 5.5 0.00019 36.9 0.7 16 2-17 36-52 (231)
500 1c1y_A RAS-related protein RAP 45.7 8.9 0.0003 32.8 2.1 15 2-16 12-26 (167)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.1e-41 Score=366.84 Aligned_cols=280 Identities=13% Similarity=0.107 Sum_probs=212.9
Q ss_pred CCCCcHHHHHHHHHH--HhhhccCCCcEEEEEecCCc--CHHHHHHHHHHHhchhhh---h----cchhhHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGR--QVKENNLFEKVISSRVSQTP--QIKNIQGEIAEKIGLELA---E----QSHETVRAGRLLERL 69 (707)
Q Consensus 1 mgGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~---~----~~~~~~~~~~~~~~l 69 (707)
|||+||||||+++|+ +.+++.+|+.++||++++.. ++..++++|+++++.... . ..........+.+.+
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence 899999999999998 57778889999999999885 899999999999986522 1 111223456666666
Q ss_pred hcCCcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 70 KKEPKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 70 ~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
.++|||||||||||+.+++ .+. ..+||+||||||++.++........+|++++|+.++||+||.+.++....++
T Consensus 240 ~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 313 (549)
T 2a5y_B 240 IDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGE 313 (549)
T ss_dssp TTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--C
T ss_pred cCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCch
Confidence 6534999999999998765 121 1279999999999999753222446899999999999999999998665557
Q ss_pred hhHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhhccCCCccccccceeeeeeecccCChHHHHHHHH-
Q 042869 150 ELKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLERTFLRSFSGTQAVAAYSTIELSYYQLEGEELRQTFL- 228 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl- 228 (707)
...+++.+|+++|+|+||||+++|+.++.+. |+.+ +.+........ ...+..++.+||++||++ +|.||+
T Consensus 314 ~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~~----~~~i~~~l~~Sy~~L~~~-lk~~f~~ 384 (549)
T 2a5y_B 314 KEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESRG----LVGVECITPYSYKSLAMA-LQRCVEV 384 (549)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHHC----SSTTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhccc----HHHHHHHHhcccccccHH-HHHHHhc
Confidence 7888999999999999999999999998663 4333 33333322111 345789999999999998 899999
Q ss_pred ----------Hhcccc-ccchhhhHHhhhcc--cccccchhHHHHHHHHHHHHHHHhhhcccccCC--cccceehhHHHH
Q 042869 229 ----------LIGYTF-ISCVKDVIYYGMGL--GLFQNINTLEEARDRAHTLIDKLKNSCLLLDGW--RSEWFSMHDVVR 293 (707)
Q Consensus 229 ----------~~~~fp-~~~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~mHdli~ 293 (707)
|||+|| ..... ++.|+++ ||+.........++.+. ++++|+++++++... ...+|+|||++|
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~ 461 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIH 461 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHH
T ss_pred cchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHH
Confidence 999999 44444 8999999 99975431222345555 999999999998653 346799999999
Q ss_pred Hhhcc
Q 042869 294 DVAIS 298 (707)
Q Consensus 294 ~la~~ 298 (707)
++|..
T Consensus 462 ~~a~~ 466 (549)
T 2a5y_B 462 MFLKH 466 (549)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99986
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.4e-33 Score=310.25 Aligned_cols=254 Identities=16% Similarity=0.141 Sum_probs=196.3
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCc-EEEEEecCCcCHHHHHHHHHHHhchhhh---hc--------chhhHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEK-VISSRVSQTPQIKNIQGEIAEKIGLELA---EQ--------SHETVRAGRLLER 68 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~--------~~~~~~~~~~~~~ 68 (707)
|||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++.... .. .........+.+.
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~l 237 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHH
Confidence 8999999999999998877778987 9999999999998888888776543210 00 0111223344444
Q ss_pred Hh--cCCcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEee------cCChHHHHHHHHh
Q 042869 69 LK--KEPKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVD------VLNEKEAWSLFKK 140 (707)
Q Consensus 69 l~--~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~------~L~~~~a~~Lf~~ 140 (707)
+. .+||+||||||||+.++|+.+ .+||+||||||++.++.. ......|.++ +|+.+||++||++
T Consensus 238 L~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~ 309 (1221)
T 1vt4_I 238 LKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLK 309 (1221)
T ss_dssp HHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHH
Confidence 41 358999999999998888754 269999999999998641 2223467777 9999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhccC--ChhHHHHHHHHHHHhhccCCCccccccceeeeeeecccC
Q 042869 141 MTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKALKNK--SPYEWRNALRQLERTFLRSFSGTQAVAAYSTIELSYYQL 218 (707)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~--~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L 218 (707)
..+.. ..++..++ |+|+||||+++|+.|+.+ +.+.|+.. ....+..++.+||+.|
T Consensus 310 ~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---------------~~~~I~aaLelSYd~L 366 (1221)
T 1vt4_I 310 YLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---------------NCDKLTTIIESSLNVL 366 (1221)
T ss_dssp HHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---------------SCHHHHHHHHHHHHHS
T ss_pred HcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---------------ChhHHHHHHHHHHHhC
Confidence 85432 12233443 999999999999999976 67788642 1356788999999999
Q ss_pred ChHHH-HHHHHHhcccc---ccchhhhHHhhhcccccccchhHHHHHHHHHHHHHHHhhhcccccCCcccceehhHHHHH
Q 042869 219 EGEEL-RQTFLLIGYTF---ISCVKDVIYYGMGLGLFQNINTLEEARDRAHTLIDKLKNSCLLLDGWRSEWFSMHDVVRD 294 (707)
Q Consensus 219 ~~~~l-k~~fl~~~~fp---~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHdli~~ 294 (707)
|++ . |.||++||+|| .+..+.++..|+++|. +.+.+++++|+++|+++..+....|+|||++++
T Consensus 367 p~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 367 EPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434 (1221)
T ss_dssp CTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHH
T ss_pred CHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHH
Confidence 998 7 99999999999 4777889999998871 135678999999999988655678999999998
Q ss_pred hhc
Q 042869 295 VAI 297 (707)
Q Consensus 295 la~ 297 (707)
++.
T Consensus 435 Lr~ 437 (1221)
T 1vt4_I 435 LKV 437 (1221)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.5e-31 Score=324.68 Aligned_cols=275 Identities=20% Similarity=0.290 Sum_probs=210.3
Q ss_pred CCCCcHHHHHHHHHHHhhh-cc-CCCcEEEEEecCCcC--HHHHHHHHHHHhchhhhhcc----hhhHHHHHHHHHHhc-
Q 042869 1 MGGIGKTTLVKEVGRQVKE-NN-LFEKVISSRVSQTPQ--IKNIQGEIAEKIGLELAEQS----HETVRAGRLLERLKK- 71 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~----~~~~~~~~~~~~l~~- 71 (707)
|||+||||||+++|++.+. +. +|+.++|+++++..+ ....++.++..+........ ........+...+..
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999998643 33 457788999998543 44556677777765432111 122233344444432
Q ss_pred CCcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEeec-CChHHHHHHHHhhhcCCCCCch
Q 042869 72 EPKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVDV-LNEKEAWSLFKKMTGDCRENGE 150 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~ 150 (707)
+||+||||||||+.++|..+ .+||+||||||++.++.........+.++. |++++|++||.+.++.. .+.
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~ 305 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KED 305 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STT
T ss_pred CCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhh
Confidence 24999999999998877753 568999999999998744456678899996 99999999999988533 234
Q ss_pred hHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhhccCCCc---cccccceeeeeeecccCChHHHHHHH
Q 042869 151 LKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLERTFLRSFSG---TQAVAAYSTIELSYYQLEGEELRQTF 227 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~---~~~~~~~~~l~~sy~~L~~~~lk~~f 227 (707)
..+.+.+|+++|+|+||||+++|++|+.+. ..|+..++.+.......... .....+..++.+||+.|+++ .|.||
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~ 383 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYY 383 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHH
Confidence 456799999999999999999999999765 57999999987655333211 12346889999999999998 79999
Q ss_pred HHhcccc---ccchhhhHHhhhcccccccchhHHHHHHHHHHHHHHHhhhcccccCC--cccceehhHHHHHhhcc
Q 042869 228 LLIGYTF---ISCVKDVIYYGMGLGLFQNINTLEEARDRAHTLIDKLKNSCLLLDGW--RSEWFSMHDVVRDVAIS 298 (707)
Q Consensus 228 l~~~~fp---~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~mHdli~~la~~ 298 (707)
+|||+|| .+..+.++..|.+++ +.+.+++++|+++++++... ...+|+||+++|+++..
T Consensus 384 ~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 384 TDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTE 447 (1249)
T ss_dssp HHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHH
T ss_pred HHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHh
Confidence 9999999 678899999997652 44567899999999998653 23369999999999876
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=4.5e-28 Score=269.18 Aligned_cols=272 Identities=21% Similarity=0.309 Sum_probs=197.2
Q ss_pred CCCCcHHHHHHHHHHHhhh-ccCC-CcEEEEEecCCcCHHHHHHHH---HHHhchhh----hhcchhhHHHHHHHHHHhc
Q 042869 1 MGGIGKTTLVKEVGRQVKE-NNLF-EKVISSRVSQTPQIKNIQGEI---AEKIGLEL----AEQSHETVRAGRLLERLKK 71 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~i---~~~l~~~~----~~~~~~~~~~~~~~~~l~~ 71 (707)
|||+||||||+++|++... +.+| +.++|++++.. +...+...+ +..++... ............+.+.+.+
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc
Confidence 7999999999999998754 5678 57999999875 333444443 34444211 1111122344455555544
Q ss_pred -CCcEEEEEeCCCCcccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEee---cCChHHHHHHHHhhhcCCCC
Q 042869 72 -EPKILIILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVD---VLNEKEAWSLFKKMTGDCRE 147 (707)
Q Consensus 72 -~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~---~L~~~~a~~Lf~~~~~~~~~ 147 (707)
.+++||||||||+..+++. ...|++||||||++.++.... ...|++. +|+.++|++||.+.++..
T Consensus 234 ~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-- 302 (591)
T 1z6t_A 234 KHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-- 302 (591)
T ss_dssp TCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC--
T ss_pred CCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC--
Confidence 2689999999998766553 256899999999998864221 3456664 899999999999998642
Q ss_pred CchhHHHHHHHHHHcCCcchHHHHHHHHhccCChhHHHHHHHHHHHhhccCCC---ccccccceeeeeeecccCChHHHH
Q 042869 148 NGELKSVAAEIVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLERTFLRSFS---GTQAVAAYSTIELSYYQLEGEELR 224 (707)
Q Consensus 148 ~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~---~~~~~~~~~~l~~sy~~L~~~~lk 224 (707)
.....+.+.+|+++|+|+||||+.+|++++... ..|...++.+......... ......+..++..||+.||++ .|
T Consensus 303 ~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~ 380 (591)
T 1z6t_A 303 KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IK 380 (591)
T ss_dssp GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-TH
T ss_pred cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HH
Confidence 222345689999999999999999999998653 4799988888754422211 112346788999999999998 69
Q ss_pred HHHHHhcccc---ccchhhhHHhhhcccccccchhHHHHHHHHHHHHHHHhhhcccccC--CcccceehhHHHHHhhcc
Q 042869 225 QTFLLIGYTF---ISCVKDVIYYGMGLGLFQNINTLEEARDRAHTLIDKLKNSCLLLDG--WRSEWFSMHDVVRDVAIS 298 (707)
Q Consensus 225 ~~fl~~~~fp---~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~--~~~~~~~mHdli~~la~~ 298 (707)
.||.++|+|| .++.+.+...|.+++ ..+..++++|++++++... +....|+||+++++++..
T Consensus 381 ~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~ 447 (591)
T 1z6t_A 381 DYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTE 447 (591)
T ss_dssp HHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHH
T ss_pred HHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHh
Confidence 9999999998 477778888886531 2346689999999999754 234579999999999976
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.3e-25 Score=232.30 Aligned_cols=304 Identities=15% Similarity=0.219 Sum_probs=236.2
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEe
Q 042869 317 DTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSL 396 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 396 (707)
...+.++++++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.+..+| .++.+++|++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 4567889999999988888888889999999999988888776 788999999999999888875 5888999999999
Q ss_pred cCCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccc
Q 042869 397 ENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKV 476 (707)
Q Consensus 397 ~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 476 (707)
++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 9999888666889999999999998544444458889999999999864 455554 678899999999888763
Q ss_pred cccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecc
Q 042869 477 GGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLN 556 (707)
Q Consensus 477 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 556 (707)
. ...+..+++|+.|+++++.....+. +..+++|+.|.++.+..... +
T Consensus 191 ---------~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~----------------------~ 237 (347)
T 4fmz_A 191 ---------D-ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL----------------------S 237 (347)
T ss_dssp ---------C-CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC----------------------G
T ss_pred ---------c-cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC----------------------c
Confidence 1 1227788899999999888777665 67888889888865542211 1
Q ss_pred hhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCccc
Q 042869 557 EGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKK 636 (707)
Q Consensus 557 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 636 (707)
. ...+++|+.|+++++. ++.+. ....+++|+.|++++| .++.++ ....+++|+.|++.+| .++.
T Consensus 238 ~--~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~~ 301 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQ-ISDIN-------AVKDLTKLKMLNVGSN-QISDIS----VLNNLSQLNSLFLNNN-QLGN 301 (347)
T ss_dssp G--GTTCTTCCEEECCSSC-CCCCG-------GGTTCTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECCSS-CCCG
T ss_pred c--hhcCCCCCEEECCCCc-cCCCh-------hHhcCCCcCEEEccCC-ccCCCh----hhcCCCCCCEEECcCC-cCCC
Confidence 1 3457899999998864 44442 3445899999999987 566652 3567899999999997 5666
Q ss_pred ccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 637 VFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 637 l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
.++. .+..+++|++|++++|+ +..++. +..+++|++|++++|+
T Consensus 302 ~~~~-~l~~l~~L~~L~L~~n~-l~~~~~--------------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 302 EDME-VIGGLTNLTTLFLSQNH-ITDIRP--------------LASLSKMDSADFANQV 344 (347)
T ss_dssp GGHH-HHHTCTTCSEEECCSSS-CCCCGG--------------GGGCTTCSEESSSCC-
T ss_pred cChh-HhhccccCCEEEccCCc-cccccC--------------hhhhhccceeehhhhc
Confidence 6443 45789999999999996 555443 2378999999999986
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.9e-25 Score=251.63 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=199.2
Q ss_pred cCchhhcCCCCccEEEecCCCccc------------------CCcccc--ccCCCCEEEecCCCCCC--cccccCCCCCc
Q 042869 357 IPSNFFTGMTELRVLDFTQMYLLA------------------LPSSLG--LLQNLQTLSLENCKLGD--MAIIGDLKKLE 414 (707)
Q Consensus 357 ~~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~ 414 (707)
+|. .++++++|++|++++|.+.. +|..++ ++++|++|+|++|.+.. |..++++++|+
T Consensus 440 IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 454 37888999999999998888 898888 99999999999998655 67888999999
Q ss_pred EEEcCCCc-hhh--chHHhhcCc-------CCCEEcCCCCCCCcccch-hhhhCCCCCcEEEccCCCccccccccc----
Q 042869 415 ILTLRGSN-MQK--LVEEIGRLT-------QLRLLDLSNCSKLKVIPA-YVISSLSRLEELYIGESPIEWGKVGGV---- 479 (707)
Q Consensus 415 ~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~---- 479 (707)
+|++++|+ +.. +|..+++++ +|++|++++|... .+|. ..++++++|+.|++++|.+.... ...
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 99999987 764 888887776 9999999986544 7886 23788999999999888765211 100
Q ss_pred ------ccccccccHHHhhcCCC-CcEEEEeeccCCCCCCChhhcc--cceEEEEEecceeccCCCC-------CccceE
Q 042869 480 ------DGERRNASLDELNNLSK-LTSLEILIQDEKALPRDLSFFK--MLQRYRILIGYWWSVGPSD-------GISRMF 543 (707)
Q Consensus 480 ------~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~l~~~~--~L~~L~l~~~~~~~~~~~~-------~~~~~~ 543 (707)
........+..+..+++ |+.|++++|....+|..+..++ +|+.|.++.+......+.. ...++.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 00111234445666666 7777777776666666654443 3777777665543221111 223677
Q ss_pred EeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCc--ccccccccceeeccCccccccccccccccc--c
Q 042869 544 RLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREA--RTTAFSLLESLFLRDLRNLEEICRGPLTAE--S 619 (707)
Q Consensus 544 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~ 619 (707)
.|.+..+.....+......+++|+.|+++++ .++.++....... ....+++|+.|++++| .++.++ .... .
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp---~~l~~~~ 751 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS---DDFRATT 751 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC---GGGSTTT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccch---HHhhhcc
Confidence 7777777666677777777899999999886 4555544322100 1223458899999886 566663 3333 6
Q ss_pred CCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCc
Q 042869 620 FCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 620 ~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
+++|+.|++++| +++.+|.. +..+++|+.|++++|+
T Consensus 752 l~~L~~L~Ls~N-~L~~lp~~--l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 752 LPYLSNMDVSYN-CFSSFPTQ--PLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CTTCCEEECCSS-CCSSCCCG--GGGCTTCCEEECCCCB
T ss_pred CCCcCEEEeCCC-CCCccchh--hhcCCCCCEEECCCCC
Confidence 888888888884 67776442 3578888888887754
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=3.9e-25 Score=246.72 Aligned_cols=291 Identities=13% Similarity=0.106 Sum_probs=208.5
Q ss_pred cCchhhcCCCCccEEEecCCCccc------------------CCcccc--ccCCCCEEEecCCCCCC--cccccCCCCCc
Q 042869 357 IPSNFFTGMTELRVLDFTQMYLLA------------------LPSSLG--LLQNLQTLSLENCKLGD--MAIIGDLKKLE 414 (707)
Q Consensus 357 ~~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~ 414 (707)
+|. .++++++|++|++++|.+.. +|..++ ++++|++|++++|.+.. |..++++++|+
T Consensus 198 ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 554 37889999999999999988 999988 99999999999998765 67899999999
Q ss_pred EEEcCCCc-hh--hchHHhhcC------cCCCEEcCCCCCCCcccch-hhhhCCCCCcEEEccCCCcc-ccccccc----
Q 042869 415 ILTLRGSN-MQ--KLVEEIGRL------TQLRLLDLSNCSKLKVIPA-YVISSLSRLEELYIGESPIE-WGKVGGV---- 479 (707)
Q Consensus 415 ~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~-~~~~~~~---- 479 (707)
+|++++|+ +. .+|..++++ ++|++|++++|... .+|. ..++++++|+.|++++|.+. ... ...
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99999997 77 488888887 89999999986554 8886 23889999999999988775 221 100
Q ss_pred ------ccccccccHHHhhcCCC-CcEEEEeeccCCCCCCChhhcc--cceEEEEEecceeccCCC--C-------Cccc
Q 042869 480 ------DGERRNASLDELNNLSK-LTSLEILIQDEKALPRDLSFFK--MLQRYRILIGYWWSVGPS--D-------GISR 541 (707)
Q Consensus 480 ------~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~l~~~~--~L~~L~l~~~~~~~~~~~--~-------~~~~ 541 (707)
........+..+..+++ |+.|++++|....+|..+...+ +|+.|.++.+......+. . ...+
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 11112245566778888 8888888888888888775544 788888877765433221 1 2346
Q ss_pred eEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCc--ccccccccceeeccCccccccccccccccc-
Q 042869 542 MFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREA--RTTAFSLLESLFLRDLRNLEEICRGPLTAE- 618 (707)
Q Consensus 542 ~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~- 618 (707)
+..|.+..+.....+......+++|+.|+++++. ++.++....... ....+++|+.|+++++ .++.++ ....
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp---~~~~~ 509 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLS---DDFRA 509 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCC---GGGST
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccC---hhhhh
Confidence 7777777776667777777778999999998864 445543321100 0112348889999885 566663 3333
Q ss_pred -cCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCc
Q 042869 619 -SFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 619 -~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
.+++|++|++++| +++.+|.. +..+++|++|++++|.
T Consensus 510 ~~l~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 510 TTLPYLVGIDLSYN-SFSKFPTQ--PLNSSTLKGFGIRNQR 547 (636)
T ss_dssp TTCTTCCEEECCSS-CCSSCCCG--GGGCSSCCEEECCSCB
T ss_pred ccCCCcCEEECCCC-CCCCcChh--hhcCCCCCEEECCCCc
Confidence 6888888888884 66666442 3568888888886544
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=8e-25 Score=235.57 Aligned_cols=322 Identities=20% Similarity=0.262 Sum_probs=175.8
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEe
Q 042869 317 DTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSL 396 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 396 (707)
.....+++|++.+|.+..++.+..+++|+.|++++|.+..+++ +.++++|++|++++|.+..+|. ++.+++|++|++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEE
T ss_pred hhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEEC
Confidence 3344455555555544444444445555555555554444443 4445555555555555444433 445555555555
Q ss_pred cCCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccc
Q 042869 397 ENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKV 476 (707)
Q Consensus 397 ~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 476 (707)
++|.+...+.++.+++|++|++.+ .+..++. +.++++|+.|++++|. +..++. +.++++|++|++++|.+.
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---- 212 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQIS---- 212 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC----
T ss_pred CCCccCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCccc----
Confidence 555544444445555555555532 2222222 5556666666666543 333333 455666666666665542
Q ss_pred cccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecc
Q 042869 477 GGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLN 556 (707)
Q Consensus 477 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 556 (707)
. . ..++.+++|+.|++++|....++ .+..+++|+.|+++.+......+.....++..|.+..+.....+
T Consensus 213 --------~-~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 213 --------D-I-TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp --------C-C-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred --------c-c-ccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccc
Confidence 0 1 11556677777777777666553 45567777777776665544433333445555555444433333
Q ss_pred hhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCccc
Q 042869 557 EGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKK 636 (707)
Q Consensus 557 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 636 (707)
. ...+++|+.|+++++. ++.+. ....+++|+.|++++| .+..+. ....+++|+.|++.+| +++.
T Consensus 282 ~--~~~l~~L~~L~L~~n~-l~~~~-------~~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQ-LEDIS-------PISNLKNLTYLTLYFN-NISDIS----PVSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp G--GTTCTTCSEEECCSSC-CSCCG-------GGGGCTTCSEEECCSS-CCSCCG----GGGGCTTCCEEECCSS-CCCC
T ss_pred c--ccCCCccCeEEcCCCc-ccCch-------hhcCCCCCCEEECcCC-cCCCch----hhccCccCCEeECCCC-ccCC
Confidence 2 3456777777776653 33332 2334777777777775 344442 1456777777777775 5666
Q ss_pred ccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 637 VFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 637 l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
++ .+..+++|+.|++++|. +..++. +..+++|++|++++|+
T Consensus 346 ~~---~l~~l~~L~~L~l~~n~-l~~~~~--------------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 346 VS---SLANLTNINWLSAGHNQ-ISDLTP--------------LANLTRITQLGLNDQA 386 (466)
T ss_dssp CG---GGTTCTTCCEEECCSSC-CCBCGG--------------GTTCTTCCEEECCCEE
T ss_pred ch---hhccCCCCCEEeCCCCc-cCccch--------------hhcCCCCCEEeccCCc
Confidence 52 34567777777777774 333322 2367899999998885
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.3e-24 Score=242.77 Aligned_cols=161 Identities=23% Similarity=0.229 Sum_probs=127.7
Q ss_pred cccCCCCccccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-Cccc
Q 042869 309 ALTSWPDKDTLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSL 385 (707)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i 385 (707)
.....+. ..++.+++|++.+|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..|
T Consensus 22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 3444443 345889999999999877554 56899999999999999999888899999999999999999886 8889
Q ss_pred cccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchh--hchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCC
Q 042869 386 GLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQ--KLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRL 461 (707)
Q Consensus 386 ~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L 461 (707)
+.+++|++|++++|.++. +..++++++|++|++++|.+. .+|..++++++|++|++++|......|. .++.+++|
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 179 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLREN 179 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhcc
Confidence 999999999999999877 367999999999999999887 4788999999999999998654333332 24444433
Q ss_pred c----EEEccCCCc
Q 042869 462 E----ELYIGESPI 471 (707)
Q Consensus 462 ~----~L~l~~~~~ 471 (707)
+ .|+++.|.+
T Consensus 180 ~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 180 PQVNLSLDMSLNPI 193 (606)
T ss_dssp TTCCCEEECTTCCC
T ss_pred ccccceeeccCCCc
Confidence 2 455555443
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=239.76 Aligned_cols=359 Identities=18% Similarity=0.180 Sum_probs=228.9
Q ss_pred cccCCCCccccccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccc
Q 042869 309 ALTSWPDKDTLKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSL 385 (707)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i 385 (707)
.+...+. ..+..+++|++.+|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+..+| ..|
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 3444443 34568999999999887654 4568999999999999999998888999999999999999998864 679
Q ss_pred cccCCCCEEEecCCCCCCc--ccccCCCCCcEEEcCCCchhh--chHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCC
Q 042869 386 GLLQNLQTLSLENCKLGDM--AIIGDLKKLEILTLRGSNMQK--LVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRL 461 (707)
Q Consensus 386 ~~l~~L~~L~l~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L 461 (707)
+.+++|++|++++|.++.. ..++++++|++|++++|.+.. +|..++++++|++|++++|.. ..++...++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhcc
Confidence 9999999999999998873 358999999999999998875 688999999999999998654 44443336677777
Q ss_pred ----cEEEccCCCccccccccccc--------------------------------------------------------
Q 042869 462 ----EELYIGESPIEWGKVGGVDG-------------------------------------------------------- 481 (707)
Q Consensus 462 ----~~L~l~~~~~~~~~~~~~~~-------------------------------------------------------- 481 (707)
+.|++..|.+..........
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 77777777654221110000
Q ss_pred -------------ccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeec
Q 042869 482 -------------ERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLT 548 (707)
Q Consensus 482 -------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~ 548 (707)
......+..+..+++|++|+++++....+|.++..+ +|+.|.+..+.....+. .....+..|.+.
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~ 333 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFT 333 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEE
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCc
Confidence 011223345667788889999888888888877766 78888887665443222 222233333332
Q ss_pred CCcceecc------------------------hhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCc
Q 042869 549 NGANICLN------------------------EGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDL 604 (707)
Q Consensus 549 ~~~~~~~~------------------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 604 (707)
.+...... +.....+++|+.|+++++. ++.++.. ...+++|+.|+++++
T Consensus 334 ~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~------~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN------FLGLEQLEHLDFQHS 406 (570)
T ss_dssp SCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE------EETCTTCCEEECTTS
T ss_pred CCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccccc------ccccCCCCEEEccCC
Confidence 22211111 1222334444444444432 2222111 223556666666554
Q ss_pred cccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcch-hhhhcccccccccCCCCCcceee
Q 042869 605 RNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNM-EVIFAAERGDESSNNNGTEVIEV 683 (707)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l-~~i~~~~~~~~~~~~~~~~~~~l 683 (707)
. +..... ......+++|++|++.+| .+...++. .+..+++|++|++++|.-. ..+|. .+..+
T Consensus 407 ~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~-------------~~~~l 469 (570)
T 2z63_A 407 N-LKQMSE-FSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-------------IFTEL 469 (570)
T ss_dssp E-EESCTT-SCTTTTCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTCEEGGGEECS-------------CCTTC
T ss_pred c-cccccc-hhhhhcCCCCCEEeCcCC-cccccchh-hhhcCCcCcEEECcCCcCccccchh-------------hhhcc
Confidence 2 222210 012345666777777665 34443332 3355677777777776432 12321 33467
Q ss_pred cccceeeccCcc
Q 042869 684 TQLRTLELRSLA 695 (707)
Q Consensus 684 ~~L~~L~l~~cp 695 (707)
++|++|++++|.
T Consensus 470 ~~L~~L~l~~n~ 481 (570)
T 2z63_A 470 RNLTFLDLSQCQ 481 (570)
T ss_dssp TTCCEEECTTSC
T ss_pred cCCCEEECCCCc
Confidence 899999998874
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4e-24 Score=221.15 Aligned_cols=288 Identities=21% Similarity=0.256 Sum_probs=233.9
Q ss_pred ccCCCCccccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccC
Q 042869 310 LTSWPDKDTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQ 389 (707)
Q Consensus 310 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 389 (707)
....+.......++.|++.+|.+..++.+..+++|++|++++|.+..++. +.++++|++|++++|.+..+|. +..++
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~ 132 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLT 132 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCT
T ss_pred cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCC
Confidence 44445556778999999999999888878899999999999998888753 8999999999999999999877 89999
Q ss_pred CCCEEEecCCC-CCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccC
Q 042869 390 NLQTLSLENCK-LGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGE 468 (707)
Q Consensus 390 ~L~~L~l~~~~-~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 468 (707)
+|++|++++|. +..++.+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|++.+
T Consensus 133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYV 208 (347)
T ss_dssp TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCS
T ss_pred ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeeccc
Confidence 99999999996 5557779999999999999999888776 8899999999999964 556665 78999999999999
Q ss_pred CCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeec
Q 042869 469 SPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLT 548 (707)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~ 548 (707)
|.+. . . ..+..+++|++|++++|....++. +..+++|+.|.++.+.....
T Consensus 209 n~l~------------~-~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------------- 258 (347)
T 4fmz_A 209 NQIT------------D-I-TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--------------- 258 (347)
T ss_dssp SCCC------------C-C-GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---------------
T ss_pred CCCC------------C-C-chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---------------
Confidence 8764 1 1 127889999999999999888876 78899999999976543211
Q ss_pred CCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEe
Q 042869 549 NGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEV 628 (707)
Q Consensus 549 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i 628 (707)
.....+++|+.|+++++ .++.++ ....+++|+.|++++|. +.... +.....+++|++|++
T Consensus 259 ---------~~~~~l~~L~~L~l~~n-~l~~~~-------~~~~l~~L~~L~L~~n~-l~~~~--~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 259 ---------NAVKDLTKLKMLNVGSN-QISDIS-------VLNNLSQLNSLFLNNNQ-LGNED--MEVIGGLTNLTTLFL 318 (347)
T ss_dssp ---------GGGTTCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSSC-CCGGG--HHHHHTCTTCSEEEC
T ss_pred ---------hhHhcCCCcCEEEccCC-ccCCCh-------hhcCCCCCCEEECcCCc-CCCcC--hhHhhccccCCEEEc
Confidence 01235789999999987 455542 34468999999999974 44432 233456899999999
Q ss_pred ccCCCcccccchhhhccCCCCcEEEEccCc
Q 042869 629 ERCDKLKKVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 629 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
++|+ ++.+++ ...+++|++|++++|+
T Consensus 319 ~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred cCCc-cccccC---hhhhhccceeehhhhc
Confidence 9974 777765 4789999999999984
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=8.1e-24 Score=227.73 Aligned_cols=320 Identities=19% Similarity=0.239 Sum_probs=234.2
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
...++.+.+.++.+..++.+..+++|++|++++|.+..+++ +.++++|++|++++|.+..++. ++.+++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 46788888888888888877788888888888888888776 7888888999988888888776 88888889999988
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
|.++..+.++++++|++|++++|.+..++ .++.+++|++|++.. ....++. ++++++|+.|++++|.+.
T Consensus 122 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~------ 190 (466)
T 1o6v_A 122 NQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS------ 190 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC------
T ss_pred CCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC------
Confidence 88888656888888899988888887776 478888888888863 3344444 678888888888888753
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchh
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEG 558 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 558 (707)
....+..+++|++|++++|.....+. +..+++|+.|.++.+............++..|.+..+.....++
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred --------CChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-
Confidence 11346778888888888887766654 66788888888877765444333334455666665554433333
Q ss_pred HHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCccccc
Q 042869 559 HIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVF 638 (707)
Q Consensus 559 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 638 (707)
...+++|+.|+++++. ++.++. ...+++|+.|+++++ .++.++ ....+++|+.|++.+| +++.++
T Consensus 261 -~~~l~~L~~L~l~~n~-l~~~~~-------~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~~~~ 325 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQ-ISNISP-------LAGLTALTNLELNEN-QLEDIS----PISNLKNLTYLTLYFN-NISDIS 325 (466)
T ss_dssp -GTTCTTCSEEECCSSC-CCCCGG-------GTTCTTCSEEECCSS-CCSCCG----GGGGCTTCSEEECCSS-CCSCCG
T ss_pred -hhcCCCCCEEECCCCc-cCcccc-------ccCCCccCeEEcCCC-cccCch----hhcCCCCCCEEECcCC-cCCCch
Confidence 4567888888888764 333332 335888888888885 455552 2567888888888886 666665
Q ss_pred chhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 639 PLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 639 ~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
+ ...+++|++|++++| .+..++. +..+++|++|++++|+
T Consensus 326 ~---~~~l~~L~~L~l~~n-~l~~~~~--------------l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 326 P---VSSLTKLQRLFFYNN-KVSDVSS--------------LANLTNINWLSAGHNQ 364 (466)
T ss_dssp G---GGGCTTCCEEECCSS-CCCCCGG--------------GTTCTTCCEEECCSSC
T ss_pred h---hccCccCCEeECCCC-ccCCchh--------------hccCCCCCEEeCCCCc
Confidence 4 367888888888887 4544432 3367888888888774
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.2e-24 Score=248.73 Aligned_cols=345 Identities=18% Similarity=0.133 Sum_probs=169.0
Q ss_pred ccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCccccccCCCCEEEecC
Q 042869 320 KVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~ 398 (707)
..+++|++.+|.+........+++|++|++++|.+...++. +.++++|++|++++|.+.. +|..++.+++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 44555555555554433344555555555555555443333 4555555666655555553 455555555555555555
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchh-hchHHhhcC-cCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQ-KLVEEIGRL-TQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKV 476 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 476 (707)
|.+........+++|++|++++|.+. .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+.
T Consensus 257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~---- 331 (768)
T 3rgz_A 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFS---- 331 (768)
T ss_dssp SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEE----
T ss_pred CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCccc----
Confidence 55543111115555555555555554 445444443 55555555555444444443 555555555555555432
Q ss_pred cccccccccccHH-HhhcCCCCcEEEEeeccCC-CCCCChhhcc-cceEEEEEecceeccCCCC----CccceEEeeecC
Q 042869 477 GGVDGERRNASLD-ELNNLSKLTSLEILIQDEK-ALPRDLSFFK-MLQRYRILIGYWWSVGPSD----GISRMFRLKLTN 549 (707)
Q Consensus 477 ~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~-~~p~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~~~ 549 (707)
+..+. .+..+++|++|++++|... .+|..+..++ +|+.|+++.+......+.. ....+..|.+..
T Consensus 332 --------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 332 --------GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp --------EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred --------CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 12222 2555556666666555543 4555555554 5555555544432211110 012333333333
Q ss_pred CcceecchhHHHHhcccceEeecC------------------------CCCcchhhhhcccCcccccccccceeeccCcc
Q 042869 550 GANICLNEGHIMQLKGIEDLTLDG------------------------LPDIKNILCELGREARTTAFSLLESLFLRDLR 605 (707)
Q Consensus 550 ~~~~~~~~~~~~~l~~L~~L~l~~------------------------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 605 (707)
+......+..+..+++|+.|++++ +.-...++.. ...+++|+.|+++++.
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE------LMYVKTLETLILDFND 477 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG------GGGCTTCCEEECCSSC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH------HcCCCCceEEEecCCc
Confidence 332222222233444555555544 3322222211 2235555555555542
Q ss_pred ccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecc
Q 042869 606 NLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQ 685 (707)
Q Consensus 606 ~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~ 685 (707)
--..+ +.....+++|+.|++.+| +++...|. .+..+++|++|++++|.-...+|. .+..+++
T Consensus 478 l~~~~---p~~l~~l~~L~~L~L~~N-~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~-------------~l~~l~~ 539 (768)
T 3rgz_A 478 LTGEI---PSGLSNCTNLNWISLSNN-RLTGEIPK-WIGRLENLAILKLSNNSFSGNIPA-------------ELGDCRS 539 (768)
T ss_dssp CCSCC---CGGGGGCTTCCEEECCSS-CCCSCCCG-GGGGCTTCCEEECCSSCCEEECCG-------------GGGGCTT
T ss_pred ccCcC---CHHHhcCCCCCEEEccCC-ccCCcCCh-HHhcCCCCCEEECCCCcccCcCCH-------------HHcCCCC
Confidence 22222 233445566666666664 33322222 234566666666666644333332 3457888
Q ss_pred cceeeccCccccccccc
Q 042869 686 LRTLELRSLAQLTSFCI 702 (707)
Q Consensus 686 L~~L~l~~cp~L~~i~~ 702 (707)
|+.|++++|+--..+|.
T Consensus 540 L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCEEECCSSEEESBCCG
T ss_pred CCEEECCCCccCCcCCh
Confidence 99999988875445553
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.9e-24 Score=238.88 Aligned_cols=331 Identities=17% Similarity=0.148 Sum_probs=208.8
Q ss_pred ccccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCccccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSSLGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L 394 (707)
.+..+++|++.+|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|.+.. .|..++.+++|++|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 4567899999999887653 45688999999999998888877788999999999999998887 47788999999999
Q ss_pred EecCCCCCC--cccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCc--EEEccCC
Q 042869 395 SLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLE--ELYIGES 469 (707)
Q Consensus 395 ~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~--~L~l~~~ 469 (707)
++++|.++. +..++++++|++|++++|.+..++ ..+..+++|++|++++|.. ..++...++.+++|+ .|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC-CEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc-cccChhhhhhhcccceeEEecCCC
Confidence 999999887 467889999999999999887652 2344589999999988544 455444478888888 7888887
Q ss_pred Cccccccccccc---------------------------------------------------------------ccccc
Q 042869 470 PIEWGKVGGVDG---------------------------------------------------------------ERRNA 486 (707)
Q Consensus 470 ~~~~~~~~~~~~---------------------------------------------------------------~~~~~ 486 (707)
.+.......... .....
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 654322110000 00011
Q ss_pred cHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCC--CCCccceEEeeecCCcce-ecchhHHHHh
Q 042869 487 SLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGP--SDGISRMFRLKLTNGANI-CLNEGHIMQL 563 (707)
Q Consensus 487 ~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~~~~~~~-~~~~~~~~~l 563 (707)
....++.+++|++|++++|....+|..+..+++|+.|.++.+......+ .....++..|.+..+... ..+......+
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred CHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 1223667778888888888888888888778888888887665443322 122334444544443322 2233334456
Q ss_pred cccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhh
Q 042869 564 KGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIG 643 (707)
Q Consensus 564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~ 643 (707)
++|+.|+++++.- +..... ......+++|+.|+++++ .+..+. +.....+++|++|++.+| +++...+...+
T Consensus 350 ~~L~~L~l~~n~l-~~~~~~---~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 421 (606)
T 3t6q_A 350 ENLRELDLSHDDI-ETSDCC---NLQLRNLSHLQSLNLSYN-EPLSLK--TEAFKECPQLELLDLAFT-RLKVKDAQSPF 421 (606)
T ss_dssp TTCCEEECCSSCC-CEEEES---TTTTTTCTTCCEEECCSC-SCEEEC--TTTTTTCTTCSEEECTTC-CEECCTTCCTT
T ss_pred CcCCEEECCCCcc-ccccCc---chhcccCCCCCEEECCCC-cCCcCC--HHHhcCCccCCeEECCCC-cCCCcccchhh
Confidence 6777777766432 222100 002234566666666654 222221 122233455555555553 33333222223
Q ss_pred ccCCCCcEEEEccC
Q 042869 644 RGLQQLQSVKVSSC 657 (707)
Q Consensus 644 ~~l~~L~~L~i~~C 657 (707)
..+++|++|++++|
T Consensus 422 ~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 422 QNLHLLKVLNLSHS 435 (606)
T ss_dssp TTCTTCCEEECTTC
T ss_pred hCcccCCEEECCCC
Confidence 44555555555554
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.6e-24 Score=237.41 Aligned_cols=324 Identities=17% Similarity=0.180 Sum_probs=219.6
Q ss_pred ccccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 394 (707)
....+++|++.+|.+...+ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+..+|.. ++.+++|++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 3478899999999887643 456889999999999998888888888999999999999999887665 8999999999
Q ss_pred EecCCCCCC---cccccCCCCCcEEEcCCCc-hhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 395 SLENCKLGD---MAIIGDLKKLEILTLRGSN-MQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 395 ~l~~~~~~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
++++|.++. +..++++++|++|++++|. +..+| ..+.++++|++|++++|...+..|.. ++++++|++|++..+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence 999998874 4678899999999999986 56666 46888999999999987766666665 788999999999887
Q ss_pred CcccccccccccccccccHH-HhhcCCCCcEEEEeeccCCCCC---CCh-hhcccc------------------------
Q 042869 470 PIEWGKVGGVDGERRNASLD-ELNNLSKLTSLEILIQDEKALP---RDL-SFFKML------------------------ 520 (707)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~p---~~l-~~~~~L------------------------ 520 (707)
... ..+. .+..+++|+.|++++|....++ ..+ ..+++|
T Consensus 183 ~~~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 183 ESA-------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp BST-------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred ccc-------------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 642 1222 2456899999999998866542 111 223334
Q ss_pred ----eEEEEEecceeccCCC--------CC-----------------------------ccceEEeeecCCcceecchhH
Q 042869 521 ----QRYRILIGYWWSVGPS--------DG-----------------------------ISRMFRLKLTNGANICLNEGH 559 (707)
Q Consensus 521 ----~~L~l~~~~~~~~~~~--------~~-----------------------------~~~~~~L~~~~~~~~~~~~~~ 559 (707)
+.+.+..+........ .. ..++..+.+..+.....+.+.
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~ 329 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHH
Confidence 4444443332111000 00 012334444444444455555
Q ss_pred HHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccc
Q 042869 560 IMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFP 639 (707)
Q Consensus 560 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~ 639 (707)
...+++|+.|+++++.-...++.... ....+++|+.|+++++ .++.++..+.....+++|++|++++| +++.+|.
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 404 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSA---CKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD 404 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHT---CTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS
T ss_pred HhcCccccEEEccCCccccccccchh---hhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCCh
Confidence 56788999999988764333322111 2345788888888875 45554211122456778888888875 6676654
Q ss_pred hhhhccCCCCcEEEEccCcchhhh
Q 042869 640 LVIGRGLQQLQSVKVSSCQNMEVI 663 (707)
Q Consensus 640 ~~~~~~l~~L~~L~i~~C~~l~~i 663 (707)
. ...+++|++|++++|. +..+
T Consensus 405 ~--~~~~~~L~~L~Ls~N~-l~~l 425 (549)
T 2z81_A 405 S--CQWPEKMRFLNLSSTG-IRVV 425 (549)
T ss_dssp C--CCCCTTCCEEECTTSC-CSCC
T ss_pred h--hcccccccEEECCCCC-cccc
Confidence 2 3556777777777763 4433
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.9e-24 Score=244.35 Aligned_cols=353 Identities=19% Similarity=0.152 Sum_probs=215.1
Q ss_pred ccceEEeccCCCCCC-C-CCCCCCCccceeeecccccc-ccCchhhcCCCCccEEEecCCCcc-cCCccccccC-CCCEE
Q 042869 320 KVCTAISLNNSNISE-P-PQGFECPQLRFLCIGYHASL-RIPSNFFTGMTELRVLDFTQMYLL-ALPSSLGLLQ-NLQTL 394 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~-~L~~L 394 (707)
..++.|++.+|.+.. . ..+..+++|+.|++++|.+. .+|...+.++++|++|++++|.+. .+|..+..+. +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 445555555555431 2 22335555666666655554 455444556666666666666555 3555565555 56666
Q ss_pred EecCCCCCC--cccccC--CCCCcEEEcCCCchh-hchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 395 SLENCKLGD--MAIIGD--LKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 395 ~l~~~~~~~--~~~i~~--l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
++++|.++. +..++. +++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|+.|++.+|
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCC
Confidence 666665443 334444 566777777777665 56677777777777777776655566654 677777777777777
Q ss_pred CcccccccccccccccccHHHhhcCCCCcEEEEeeccCC-CCCCChhhcccceEEEEEecceeccCCC--CCccceEEee
Q 042869 470 PIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK-ALPRDLSFFKMLQRYRILIGYWWSVGPS--DGISRMFRLK 546 (707)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~ 546 (707)
.+. ...+..+..+++|+.|++++|... .+|..+..+++|+.|+++.+......+. ....++..|.
T Consensus 453 ~l~------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 453 MLE------------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CCC------------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ccc------------CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 654 344556777777888887777755 5666777777788887776665433221 2334555666
Q ss_pred ecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccC---------------------------------------
Q 042869 547 LTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGRE--------------------------------------- 587 (707)
Q Consensus 547 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--------------------------------------- 587 (707)
+..+......+.....+++|+.|++++++-...++..+...
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 65555544444445567788888887654322222211100
Q ss_pred -------------------------cccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhh
Q 042869 588 -------------------------ARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVI 642 (707)
Q Consensus 588 -------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~ 642 (707)
.....+++|+.|+++++.--..+ |...+.+++|+.|+++++ +++...|. .
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i---p~~l~~l~~L~~L~Ls~N-~l~g~ip~-~ 675 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI---PKEIGSMPYLFILNLGHN-DISGSIPD-E 675 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC---CGGGGGCTTCCEEECCSS-CCCSCCCG-G
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC---CHHHhccccCCEEeCcCC-ccCCCCCh-H
Confidence 01233567888888876322244 455677888888888885 55543342 3
Q ss_pred hccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcccccccccc
Q 042869 643 GRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLTSFCIL 703 (707)
Q Consensus 643 ~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~i~~~ 703 (707)
+..+++|+.|++++|.--..+|. .+..+++|++|++++++---.||..
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~-------------~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQ-------------AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCG-------------GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HhCCCCCCEEECCCCcccCcCCh-------------HHhCCCCCCEEECcCCcccccCCCc
Confidence 46788888888888755445554 3446788888888888644455543
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.3e-23 Score=226.11 Aligned_cols=356 Identities=18% Similarity=0.173 Sum_probs=231.4
Q ss_pred ccCCCCccccccceEEeccCCCCCCC--CCCCCCCccceeeecccccc-ccCchhhcCCCCccEEEecCCCcccC-Cccc
Q 042869 310 LTSWPDKDTLKVCTAISLNNSNISEP--PQGFECPQLRFLCIGYHASL-RIPSNFFTGMTELRVLDFTQMYLLAL-PSSL 385 (707)
Q Consensus 310 ~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i 385 (707)
+...+. .++.+++|++.+|.+... ..+..+++|++|++++|... .+++..|.++++|++|++++|.+..+ |..+
T Consensus 22 l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 22 LHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp CSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred cccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 444444 456788888888877653 33557788888888877665 56666677888888888888887774 6778
Q ss_pred cccCCCCEEEecCCCCCC--ccc--ccCCCCCcEEEcCCCchhhc-hHH-hhcCcCCCEEcCCCCCCCcccchhhhhCC-
Q 042869 386 GLLQNLQTLSLENCKLGD--MAI--IGDLKKLEILTLRGSNMQKL-VEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSL- 458 (707)
Q Consensus 386 ~~l~~L~~L~l~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l- 458 (707)
+.+++|++|++++|.++. +.. ++++++|++|++++|.+..+ |.. +.++++|++|++++|......|.. +..+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 178 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQ 178 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccc
Confidence 888888888888888776 333 77788888888888877765 433 677888888888876554444433 4444
Q ss_pred -CCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCC-CCCChhh---cccceEEEEEecceecc
Q 042869 459 -SRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKA-LPRDLSF---FKMLQRYRILIGYWWSV 533 (707)
Q Consensus 459 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~l~~---~~~L~~L~l~~~~~~~~ 533 (707)
.+|+.|++..|.+........ .......+..+++|++|++++|.... .|..+.. .++|+.|.++.+.....
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWL----GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCT----THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred cccccccccccCcccccchhhc----cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 677788887776542111100 00111123455788888888876532 3333322 26777777765432111
Q ss_pred CC--------------CCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCccccccccccee
Q 042869 534 GP--------------SDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESL 599 (707)
Q Consensus 534 ~~--------------~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L 599 (707)
.. ......+..+.+..+......+..+..+++|+.|+++++. ++.+... .+..+++|+.|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----~~~~l~~L~~L 328 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN-----AFWGLTHLLKL 328 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-----TTTTCTTCCEE
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh-----HhcCcccCCEE
Confidence 00 0011345566665555555555555678899999998865 3333221 23458899999
Q ss_pred eccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCc
Q 042869 600 FLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTE 679 (707)
Q Consensus 600 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~ 679 (707)
+++++ .++.+. +.....+++|++|++++| +++.+++. .+..+++|++|++++| .+.+++...
T Consensus 329 ~Ls~N-~l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~------------ 390 (455)
T 3v47_A 329 NLSQN-FLGSID--SRMFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGI------------ 390 (455)
T ss_dssp ECCSS-CCCEEC--GGGGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTT------------
T ss_pred ECCCC-ccCCcC--hhHhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhH------------
Confidence 99986 455553 233456899999999985 77777553 3467899999999997 566665422
Q ss_pred ceeecccceeeccCccc
Q 042869 680 VIEVTQLRTLELRSLAQ 696 (707)
Q Consensus 680 ~~~l~~L~~L~l~~cp~ 696 (707)
+..+++|++|+++++|-
T Consensus 391 ~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred hccCCcccEEEccCCCc
Confidence 23789999999998763
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.5e-24 Score=243.90 Aligned_cols=337 Identities=13% Similarity=0.116 Sum_probs=196.6
Q ss_pred cccccceEEeccCCCCCC------------------CCCCC---CCCccceeeeccccccccCchhhcCCCCccEEEecC
Q 042869 317 DTLKVCTAISLNNSNISE------------------PPQGF---ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQ 375 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 375 (707)
.....++.|++.+|.+.. +|... .+++|+.|++++|......+..+.++++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 445678888888887766 55433 688888888887765443335577888888888888
Q ss_pred CC-ccc--CCccccccC-------CCCEEEecCCCCCC-cc--cccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCC
Q 042869 376 MY-LLA--LPSSLGLLQ-------NLQTLSLENCKLGD-MA--IIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLS 442 (707)
Q Consensus 376 ~~-~~~--lp~~i~~l~-------~L~~L~l~~~~~~~-~~--~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 442 (707)
|. +.. +|..++.+. +|++|++++|.++. |. .++++++|++|++++|.+..+| .++++++|+.|+++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 86 664 777776665 88888888888776 44 5788888888888888877777 77888888888888
Q ss_pred CCCCCcccchhhhhCCCC-CcEEEccCCCcccccccccccccccccHHHhhcC--CCCcEEEEeeccCCCCC----CChh
Q 042869 443 NCSKLKVIPAYVISSLSR-LEELYIGESPIEWGKVGGVDGERRNASLDELNNL--SKLTSLEILIQDEKALP----RDLS 515 (707)
Q Consensus 443 ~~~~~~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~p----~~l~ 515 (707)
+|.. ..+|.. +.++++ |+.|++++|.+... +..+..+ ++|+.|++++|.....+ ..+.
T Consensus 604 ~N~l-~~lp~~-l~~l~~~L~~L~Ls~N~L~~l-------------p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 604 YNQI-EEIPED-FCAFTDQVEGLGFSHNKLKYI-------------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp SSCC-SCCCTT-SCEECTTCCEEECCSSCCCSC-------------CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred CCcc-ccchHH-HhhccccCCEEECcCCCCCcC-------------chhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 7554 477765 677877 88888888776411 1112222 22555555554432221 1111
Q ss_pred --hcccceEEEEEecceeccCCCC--CccceEEeeecCCcceecchhHHH-------HhcccceEeecCCCCcchhhhhc
Q 042869 516 --FFKMLQRYRILIGYWWSVGPSD--GISRMFRLKLTNGANICLNEGHIM-------QLKGIEDLTLDGLPDIKNILCEL 584 (707)
Q Consensus 516 --~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~l~~~~~~~ 584 (707)
..++|+.|.++.+.....+... ...++..|.+..+.....+.+... .+++|+.|+|+++ .++.++..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l 747 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF 747 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHh
Confidence 1224455555444333221110 112233333333322222222211 2346777777665 344444332
Q ss_pred ccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccC-----CCcccccchhhhccCCCCcEEEEccCcc
Q 042869 585 GREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERC-----DKLKKVFPLVIGRGLQQLQSVKVSSCQN 659 (707)
Q Consensus 585 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C-----~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 659 (707)
. ...+++|+.|+++++ .++.+ +.....+++|+.|+++++ +++....|. .+..+++|++|++++|.-
T Consensus 748 ~----~~~l~~L~~L~Ls~N-~L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 748 R----ATTLPYLSNMDVSYN-CFSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp S----TTTCTTCCEEECCSS-CCSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCC
T ss_pred h----hccCCCcCEEEeCCC-CCCcc---chhhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCCEEECCCCCC
Confidence 1 114677777777764 44444 344556777777777652 233322232 235677777777777643
Q ss_pred hhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 660 MEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 660 l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
..+|.. -+++|+.|+|++||
T Consensus 819 -~~Ip~~---------------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 819 -RKVDEK---------------LTPQLYILDIADNP 838 (876)
T ss_dssp -CBCCSC---------------CCSSSCEEECCSCT
T ss_pred -CccCHh---------------hcCCCCEEECCCCC
Confidence 555541 12567777777665
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2.1e-23 Score=232.96 Aligned_cols=357 Identities=15% Similarity=0.125 Sum_probs=174.3
Q ss_pred ccccceEEeccCCCCCCC--CCCCCCCccceeeeccccccccCchhhcCCCCcc--EEEecCCCcccCCccccccC----
Q 042869 318 TLKVCTAISLNNSNISEP--PQGFECPQLRFLCIGYHASLRIPSNFFTGMTELR--VLDFTQMYLLALPSSLGLLQ---- 389 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~lp~~i~~l~---- 389 (707)
....++.|.+.+|.+..+ +....+++|+.|++++|.+..+++..+..+++|+ .|++++|.+..+++......
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence 445677777777777654 5555677788888877777777666677777777 67777766655332211111
Q ss_pred ------------------------------------------------CCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 390 ------------------------------------------------NLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 390 ------------------------------------------------~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
+|+.|++++|.++. +..++.+++|++|+++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence 34555555555544 2335666667777776
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcE
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTS 499 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 499 (707)
+|.+..+|..+..+++|++|++++|......|. .+.++++|+.|++++|.+... .....+..+++|++
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~-----------~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLE-----------LGTGCLENLENLRE 354 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCB-----------CCSSTTTTCTTCCE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccc-----------cchhhhhccCcCCE
Confidence 666666666666666777777666543332232 256666666666666654210 01112444555555
Q ss_pred EEEeeccCCCC---CCChhhcccceEEEEEecceeccCC--CCCccceEEeeecCCcceecc-hhHHHHhcccceEeecC
Q 042869 500 LEILIQDEKAL---PRDLSFFKMLQRYRILIGYWWSVGP--SDGISRMFRLKLTNGANICLN-EGHIMQLKGIEDLTLDG 573 (707)
Q Consensus 500 L~l~~~~~~~~---p~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~ 573 (707)
|++++|..... |..+..+++|+.|.++.+......+ .....++..|.+..+...... ......+++|+.|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 55555544333 3334445555555554443322211 111223333333333222111 11123445555555555
Q ss_pred CCCcchhhhhcccCcccccccccceeeccCcccccc-ccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEE
Q 042869 574 LPDIKNILCELGREARTTAFSLLESLFLRDLRNLEE-ICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSV 652 (707)
Q Consensus 574 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L 652 (707)
+.- +..... ....+++|+.|+++++. +.. ....+.....+++|+.|++.+| +++.+++. .+..+++|++|
T Consensus 435 n~l-~~~~~~-----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L 505 (606)
T 3t6q_A 435 SLL-DISSEQ-----LFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH-AFTSLKMMNHV 505 (606)
T ss_dssp CCC-BTTCTT-----TTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEE
T ss_pred Ccc-CCcCHH-----HHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccChh-hhccccCCCEE
Confidence 432 111111 12235555555555542 221 0000112334455555555553 44444332 22445555555
Q ss_pred EEccCcchhhhhccccccc--c---cC-----CCCCcceeecccceeeccCcc
Q 042869 653 KVSSCQNMEVIFAAERGDE--S---SN-----NNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 653 ~i~~C~~l~~i~~~~~~~~--~---~~-----~~~~~~~~l~~L~~L~l~~cp 695 (707)
++++|.--...+..-.... . .. .....+..+++|++|+++++|
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 5555422111111000000 0 00 001123467899999999887
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=5e-23 Score=225.34 Aligned_cols=143 Identities=18% Similarity=0.233 Sum_probs=74.6
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKL 401 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~ 401 (707)
+++++.++.+..+|.... ++|+.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 345555555555444322 5555555555555555554555555555555555555553 44555555555555555555
Q ss_pred CCcccccCCCCCcEEEcCCCchhh--chHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCC--cEEEccCCCc
Q 042869 402 GDMAIIGDLKKLEILTLRGSNMQK--LVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRL--EELYIGESPI 471 (707)
Q Consensus 402 ~~~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L--~~L~l~~~~~ 471 (707)
+..+.. .+++|++|++++|.+.. +|..++++++|++|++++|.... ..+..+++| +.|++.+|.+
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 553222 55555555555555543 34555555555555555543221 113444444 5555555443
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.1e-23 Score=232.30 Aligned_cols=355 Identities=14% Similarity=0.120 Sum_probs=228.6
Q ss_pred ccccccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc--CCccccccCCC
Q 042869 316 KDTLKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA--LPSSLGLLQNL 391 (707)
Q Consensus 316 ~~~~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L 391 (707)
......+++|++.+|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+.. .|..++.+++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 345678999999999987754 35689999999999999999999889999999999999999985 57789999999
Q ss_pred CEEEecCCC-CCC-c-ccccCCCCCcEEEcCCCchhh-chHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEcc
Q 042869 392 QTLSLENCK-LGD-M-AIIGDLKKLEILTLRGSNMQK-LVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIG 467 (707)
Q Consensus 392 ~~L~l~~~~-~~~-~-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~ 467 (707)
++|++++|. +.. + ..++++++|++|++++|.+.. .|..++++++|++|+++.+. ...+|...++.+++|+.|+++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEcc
Confidence 999999998 444 2 578999999999999998875 67889999999999999854 566777656789999999999
Q ss_pred CCCcccccccccc---------------cc----cccccHHH--------------------------------------
Q 042869 468 ESPIEWGKVGGVD---------------GE----RRNASLDE-------------------------------------- 490 (707)
Q Consensus 468 ~~~~~~~~~~~~~---------------~~----~~~~~~~~-------------------------------------- 490 (707)
+|.+......... .. ........
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 9876532100000 00 00000001
Q ss_pred ---------------------hhcCCCCcEEEEeeccCCCCCCCh-hhcccceEEEEEecceeccC-----CCCCccceE
Q 042869 491 ---------------------LNNLSKLTSLEILIQDEKALPRDL-SFFKMLQRYRILIGYWWSVG-----PSDGISRMF 543 (707)
Q Consensus 491 ---------------------l~~l~~L~~L~l~~~~~~~~p~~l-~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~ 543 (707)
....++|+.|++++|....+|..+ ..+++|+.|+++.+...... ......++.
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 112245556666666666666555 45777777777666543211 112234455
Q ss_pred EeeecCCcceecch--hHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCcccccccccccc------
Q 042869 544 RLKLTNGANICLNE--GHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPL------ 615 (707)
Q Consensus 544 ~L~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------ 615 (707)
.|.+..+.....+. .....+++|+.|+++++ .++.++.. ...+++|+.|+++++ .++.++....
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~------~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS------CQWPEKMRFLNLSST-GIRVVKTCIPQTLEVL 436 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC------CCCCTTCCEEECTTS-CCSCCCTTSCTTCSEE
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChh------hcccccccEEECCCC-CcccccchhcCCceEE
Confidence 55554444333321 23456777777777775 34444332 223556666666554 2333311000
Q ss_pred ---------ccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeeccc
Q 042869 616 ---------TAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQL 686 (707)
Q Consensus 616 ---------~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L 686 (707)
....+++|++|++++| +++.+|.. ..+++|+.|++++| .+..++. ..+..+++|
T Consensus 437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L 499 (549)
T 2z81_A 437 DVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPD------------GIFDRLTSL 499 (549)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCT------------TGGGGCTTC
T ss_pred ECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcCH------------HHHhcCccc
Confidence 0123455555555553 45555431 34555555555554 3333322 124477888
Q ss_pred ceeeccCccc
Q 042869 687 RTLELRSLAQ 696 (707)
Q Consensus 687 ~~L~l~~cp~ 696 (707)
++|+++++|-
T Consensus 500 ~~L~l~~N~~ 509 (549)
T 2z81_A 500 QKIWLHTNPW 509 (549)
T ss_dssp CEEECCSSCB
T ss_pred CEEEecCCCc
Confidence 9999888873
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-23 Score=220.08 Aligned_cols=305 Identities=13% Similarity=0.177 Sum_probs=199.1
Q ss_pred CCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcE
Q 042869 339 FECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEI 415 (707)
Q Consensus 339 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~ 415 (707)
..+++++.|++.++.+..+|+.++..+++|++|+++++.+..++ ..++.+++|++|++++|.++. +..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34567777777777777777777777777777777777776654 367777777777777777666 344677777777
Q ss_pred EEcCCCchhhchHHh-hcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcC
Q 042869 416 LTLRGSNMQKLVEEI-GRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNL 494 (707)
Q Consensus 416 L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l 494 (707)
|++++|.+..+|..+ +++++|++|++++|.. ..++...++++++|+.|++++|.+... .+..+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~l 185 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---------------DLSLI 185 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBC---------------CGGGC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCcc---------------ccccc
Confidence 777777777777653 6677777777777543 344433366777777777777765310 24455
Q ss_pred CCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCC
Q 042869 495 SKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGL 574 (707)
Q Consensus 495 ~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 574 (707)
++|+.|++++|....++ ..++|+.|.++.+....... ....++..|.+..+..... .....+++|+.|+++++
T Consensus 186 ~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp TTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred cccceeecccccccccC----CCCcceEEECCCCeeeeccc-cccccccEEECCCCCCccc--HHHcCCCCccEEECCCC
Confidence 66777776666544332 23456666665554332211 1123344444433332222 23456899999999886
Q ss_pred CCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEE
Q 042869 575 PDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKV 654 (707)
Q Consensus 575 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 654 (707)
. ++.+... .+..+++|+.|+++++ .++.+ +.....+++|++|++.+| +++.+++. ...+++|++|++
T Consensus 259 ~-l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L 325 (390)
T 3o6n_A 259 E-LEKIMYH-----PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYL 325 (390)
T ss_dssp C-CCEEESG-----GGTTCSSCCEEECCSS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEEC
T ss_pred c-CCCcChh-----HccccccCCEEECCCC-cCccc---CcccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEEC
Confidence 4 4433221 2345899999999985 66666 344567899999999996 78887543 467899999999
Q ss_pred ccCcchhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 655 SSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 655 ~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
++|. +..++ +..+++|++|+++++|
T Consensus 326 ~~N~-i~~~~---------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 326 DHNS-IVTLK---------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred CCCc-cceeC---------------chhhccCCEEEcCCCC
Confidence 9984 44442 2367899999999886
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3e-23 Score=221.28 Aligned_cols=295 Identities=15% Similarity=0.089 Sum_probs=193.1
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEec
Q 042869 318 TLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 397 (707)
....+++|++.++.+..+|.+..+++|++|++++|.+..++ ++.+++|++|++++|.+..+| ++.+++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 35677888888888877777778888888888888877775 677888888888888888875 7888888888888
Q ss_pred CCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 398 NCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 398 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
+|.++..+ ++.+++|++|++++|.+..++ ++++++|+.|++++|..++.++ ++.+++|+.|++++|.+..
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~---- 184 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---- 184 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC----
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce----
Confidence 88887754 788888888888888887764 7788888888888876666663 5678888888888887641
Q ss_pred ccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecch
Q 042869 478 GVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNE 557 (707)
Q Consensus 478 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 557 (707)
.+ +..+++|+.|++++|....++ +..+++|+.|+++.+..... +.....++..|.+..+.....+.
T Consensus 185 ---------l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 185 ---------LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp ---------CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCCC
T ss_pred ---------ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-CccccCCCCEEEeeCCcCCCcCH
Confidence 11 556667777777776665552 55666777777766554432 22233334444443333222221
Q ss_pred hHHHHhcccceE----------eecCCCCcchhhhhcccCcccccccccceeeccCcccccccccc-----ccccccCCC
Q 042869 558 GHIMQLKGIEDL----------TLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRG-----PLTAESFCK 622 (707)
Q Consensus 558 ~~~~~l~~L~~L----------~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~~~~~ 622 (707)
+.+++|+.| +++++..+..+ +...+++|+.|++++|..++.++.. .......++
T Consensus 251 ---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 251 ---STLSKLTTLHCIQTDLLEIDLTHNTQLIYF--------QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp ---TTCTTCCEEECTTCCCSCCCCTTCTTCCEE--------ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred ---HHCCCCCEEeccCCCCCEEECCCCccCCcc--------cccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 134444443 44443332222 2234678888888877666655321 112234456
Q ss_pred cCEEEeccCCCcccccchhhhccCCCCcEEEEccC
Q 042869 623 LKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSC 657 (707)
Q Consensus 623 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 657 (707)
|+.|++.+ ++++.++ +..+++|+.|+++++
T Consensus 320 L~~L~L~~-N~l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 320 LVYLYLNN-TELTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCEEECTT-CCCSCCC----CTTCTTCSEEECCSS
T ss_pred CCEEECCC-Ccccccc----cccCCcCcEEECCCC
Confidence 66666665 3555542 356777788877764
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.5e-23 Score=232.34 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=130.7
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKL 401 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~ 401 (707)
+.++..+..+..+|.... ++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..|+.+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 467888888888776443 8999999999999999988899999999999999999985 67899999999999999998
Q ss_pred CC--cccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCc-ccchhhhhCCCCCcEEEccCCCcc
Q 042869 402 GD--MAIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLK-VIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 402 ~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
+. |..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 87 578999999999999999998776 678999999999999976554 56775 899999999999999765
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.8e-24 Score=236.67 Aligned_cols=189 Identities=15% Similarity=0.187 Sum_probs=96.0
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCC-ccc--CCcccccc------CCCCEEEecCCCCCC-cc--cc
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMY-LLA--LPSSLGLL------QNLQTLSLENCKLGD-MA--II 407 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l------~~L~~L~l~~~~~~~-~~--~i 407 (707)
.+++|++|++++|......+..+.++++|++|++++|. ++. +|..++.+ ++|++|++++|.++. |. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 35556666665554333222334555556666665554 442 55555544 555555555555554 33 45
Q ss_pred cCCCCCcEEEcCCCchh-hchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCC-CcEEEccCCCcccccccccc-----
Q 042869 408 GDLKKLEILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSR-LEELYIGESPIEWGKVGGVD----- 480 (707)
Q Consensus 408 ~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~----- 480 (707)
+++++|++|++++|.+. .+| .++++++|++|++++|. +..+|.. +.++++ |+.|++++|.+.........
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 55555555555555555 555 55555555555555532 2345543 455555 55555555544311000000
Q ss_pred --------cccccccHHHhh-------cCCCCcEEEEeeccCCCCCCCh-hhcccceEEEEEeccee
Q 042869 481 --------GERRNASLDELN-------NLSKLTSLEILIQDEKALPRDL-SFFKMLQRYRILIGYWW 531 (707)
Q Consensus 481 --------~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~p~~l-~~~~~L~~L~l~~~~~~ 531 (707)
.......+..+. .+++|+.|++++|....+|..+ ..+++|+.|.++.+...
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 000011222233 4556777777777666666654 33667777777665544
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.6e-22 Score=223.23 Aligned_cols=144 Identities=19% Similarity=0.301 Sum_probs=113.0
Q ss_pred ceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCC
Q 042869 322 CTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 322 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 400 (707)
.+++++.++.+..+|.... ++|+.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 3788888888887776433 7889999998888888877788899999999999988885 6778888999999999998
Q ss_pred CCCcccccCCCCCcEEEcCCCchhhch--HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCC--cEEEccCCCc
Q 042869 401 LGDMAIIGDLKKLEILTLRGSNMQKLV--EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRL--EELYIGESPI 471 (707)
Q Consensus 401 ~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L--~~L~l~~~~~ 471 (707)
++..+.. .+++|++|++++|.+..+| ..++++++|++|++++|.... .. +..+++| +.|+++.|.+
T Consensus 112 l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence 8874333 7889999999998887654 678889999999998854432 21 4455555 8888888765
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.2e-22 Score=217.57 Aligned_cols=311 Identities=18% Similarity=0.191 Sum_probs=199.7
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKL 401 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~ 401 (707)
+.+...+..+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 34555555555555422 35677777777777777666677777777777777777664 66677777777777777776
Q ss_pred CCc--ccccCCCCCcEEEcCCCchhhc-hHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 402 GDM--AIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 402 ~~~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
+.. ..++++++|++|++++|.+..+ |..+.++++|++|++++|.. ..++...+.++++|+.|++.+|.+.
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~------ 165 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT------ 165 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCS------
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCc------
Confidence 662 3456777777777777766654 34566777777777776443 3333333667777777777777653
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccCCCCCC-ChhhcccceEEEEEecceeccCCC--CCccceEEeeecCCcceec
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDEKALPR-DLSFFKMLQRYRILIGYWWSVGPS--DGISRMFRLKLTNGANICL 555 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~ 555 (707)
......+..+++|+.|++++|....++. .+..+++|+.|.++.+......+. ....++..|.+..+.....
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred ------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 2233456667777777777766555443 446667777777765543222111 1122444555544544455
Q ss_pred chhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcc
Q 042869 556 NEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLK 635 (707)
Q Consensus 556 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~ 635 (707)
+...+..+++|+.|+++++. ++.+... .+..+++|+.|+++++ .++.+. +.....+++|+.|+++++ +++
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~ 309 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNP-ISTIEGS-----MLHELLRLQEIQLVGG-QLAVVE--PYAFRGLNYLRVLNVSGN-QLT 309 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSC-CCEECTT-----SCTTCTTCCEEECCSS-CCSEEC--TTTBTTCTTCCEEECCSS-CCS
T ss_pred CHHHhcCccccCeeECCCCc-CCccChh-----hccccccCCEEECCCC-ccceEC--HHHhcCcccCCEEECCCC-cCc
Confidence 55566778999999998865 4444322 3445889999999885 555553 234456899999999985 888
Q ss_pred cccchhhhccCCCCcEEEEccCc
Q 042869 636 KVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 636 ~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
.+++. .+..+++|++|++++++
T Consensus 310 ~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 310 TLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCCGG-GBSCGGGCCEEECCSSC
T ss_pred eeCHh-HcCCCcccCEEEccCCC
Confidence 88653 45678999999998764
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.8e-23 Score=227.89 Aligned_cols=305 Identities=13% Similarity=0.181 Sum_probs=208.6
Q ss_pred CCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcE
Q 042869 339 FECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEI 415 (707)
Q Consensus 339 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~ 415 (707)
..+++++.|++.++.+..+|+.++.++++|++|++++|.+..+| ..++.+++|++|+|++|.++. +..++++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35677788888888888888877788888888888888877754 477888888888888888776 345678888888
Q ss_pred EEcCCCchhhchHHh-hcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcC
Q 042869 416 LTLRGSNMQKLVEEI-GRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNL 494 (707)
Q Consensus 416 L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l 494 (707)
|++++|.+..+|..+ +++++|++|++++|.. ..++...++++++|+.|++++|.+... .++.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~l 191 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---------------DLSLI 191 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBC---------------CGGGC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCc---------------Chhhh
Confidence 888888887777664 7788888888887654 344433477788888888888765411 24556
Q ss_pred CCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCC
Q 042869 495 SKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGL 574 (707)
Q Consensus 495 ~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 574 (707)
++|+.|++++|....+ ....+|+.|.++.+......+. ...++..|.+..+.... + .....+++|+.|+++++
T Consensus 192 ~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~-~-~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 192 PSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp TTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred hhhhhhhcccCccccc----cCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCC-C-hhhccCCCCCEEECCCC
Confidence 7777777777655433 2334667777766554332221 12344444444333222 2 23456899999999886
Q ss_pred CCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEE
Q 042869 575 PDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKV 654 (707)
Q Consensus 575 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 654 (707)
. ++.+... .+..+++|+.|+++++ .+..+ +.....+++|+.|++++| .++.+|+. +..+++|+.|++
T Consensus 265 ~-l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~Ls~N-~l~~i~~~--~~~l~~L~~L~L 331 (597)
T 3oja_B 265 E-LEKIMYH-----PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYL 331 (597)
T ss_dssp C-CCEEESG-----GGTTCSSCCEEECTTS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEEC
T ss_pred c-cCCCCHH-----HhcCccCCCEEECCCC-CCCCC---CcccccCCCCcEEECCCC-CCCccCcc--cccCCCCCEEEC
Confidence 5 3333221 2345899999999985 66666 344566899999999985 67777543 467899999999
Q ss_pred ccCcchhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 655 SSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 655 ~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
++|. +..++ +..+++|++|+++++|
T Consensus 332 ~~N~-l~~~~---------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 332 DHNS-IVTLK---------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred CCCC-CCCcC---------------hhhcCCCCEEEeeCCC
Confidence 9985 43332 2367899999999887
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.8e-22 Score=223.87 Aligned_cols=343 Identities=18% Similarity=0.172 Sum_probs=232.7
Q ss_pred cccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCE
Q 042869 317 DTLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQT 393 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 393 (707)
.....+++|++.+|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.+..+|. .++.+++|++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 456789999999998876543 5589999999999999999988889999999999999999999775 6999999999
Q ss_pred EEecCCCCCC---cccccCCCCCcEEEcCCCchhhch-HHhhcCcCC----CEEcCCCCCCCcccchhhhh---------
Q 042869 394 LSLENCKLGD---MAIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQL----RLLDLSNCSKLKVIPAYVIS--------- 456 (707)
Q Consensus 394 L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L----~~L~l~~~~~~~~~p~~~~~--------- 456 (707)
|++++|.++. |..++++++|++|++++|.+..++ ..++.+++| +.|++++|... .++...+.
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEE
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccCcceeEec
Confidence 9999999875 678999999999999999888664 567777787 78888875432 22222122
Q ss_pred ------------------------------------------------------------------------CCCCCcEE
Q 042869 457 ------------------------------------------------------------------------SLSRLEEL 464 (707)
Q Consensus 457 ------------------------------------------------------------------------~l~~L~~L 464 (707)
.+++|+.|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 23333333
Q ss_pred EccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCC--------
Q 042869 465 YIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPS-------- 536 (707)
Q Consensus 465 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~-------- 536 (707)
++.+|.+ ...+..+..+ +|++|+++++....+|.. .+++|+.|.+..+......+.
T Consensus 288 ~l~~~~l-------------~~l~~~~~~~-~L~~L~l~~n~~~~l~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~L~~ 351 (570)
T 2z63_A 288 SLVSVTI-------------ERVKDFSYNF-GWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351 (570)
T ss_dssp EEESCEE-------------CSCCBCCSCC-CCSEEEEESCBCSSCCBC--BCSSCCEEEEESCBSCCBCCCCBCTTCCE
T ss_pred EecCccc-------------hhhhhhhccC-CccEEeeccCcccccCcc--cccccCEEeCcCCccccccccccCCCCCE
Confidence 3333322 1233334455 677777777766666552 344455555443332211111
Q ss_pred ------------------CCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccce
Q 042869 537 ------------------DGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLES 598 (707)
Q Consensus 537 ------------------~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~ 598 (707)
....++..|.+..+.....+.. ...+++|+.|++.++. ++..... .....+++|+.
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~----~~~~~l~~L~~ 425 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN-LKQMSEF----SVFLSLRNLIY 425 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE-EESCTTS----CTTTTCTTCCE
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc-cccccch----hhhhcCCCCCE
Confidence 1223444555555544444443 4568999999998864 3322210 13446899999
Q ss_pred eeccCccccccccccccccccCCCcCEEEeccCCCcc-cccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCC
Q 042869 599 LFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLK-KVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNG 677 (707)
Q Consensus 599 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~-~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~ 677 (707)
|++++|. +.... +.....+++|++|++.+|.-.. .+| ..+..+++|++|++++|. +..++..
T Consensus 426 L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~~~----------- 488 (570)
T 2z63_A 426 LDISHTH-TRVAF--NGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSPT----------- 488 (570)
T ss_dssp EECTTSC-CEECC--TTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECTT-----------
T ss_pred EeCcCCc-ccccc--hhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-cccCChh-----------
Confidence 9999974 33332 3345678999999999975332 343 245789999999999984 4444221
Q ss_pred CcceeecccceeeccCcccccccc
Q 042869 678 TEVIEVTQLRTLELRSLAQLTSFC 701 (707)
Q Consensus 678 ~~~~~l~~L~~L~l~~cp~L~~i~ 701 (707)
.+..+++|++|++++| +++.++
T Consensus 489 -~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 489 -AFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp -TTTTCTTCCEEECCSS-CCSCCC
T ss_pred -hhhcccCCCEEeCCCC-cCCCCC
Confidence 2337899999999998 455553
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=4e-22 Score=214.41 Aligned_cols=320 Identities=16% Similarity=0.146 Sum_probs=213.7
Q ss_pred ccccccceEEeccCCCCC-CC--CCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCcc--ccccC
Q 042869 316 KDTLKVCTAISLNNSNIS-EP--PQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSS--LGLLQ 389 (707)
Q Consensus 316 ~~~~~~~~~l~l~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~--i~~l~ 389 (707)
......++.|++.+|.+. .+ ..+..+++|++|++++|.+..+++..|.++++|++|++++|.+.. .|.. ++.++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 345678999999999875 22 335689999999999999998877789999999999999999987 4544 89999
Q ss_pred CCCEEEecCCCCCC--ccc-ccCCCCCcEEEcCCCchhhc-hHHhhcC--cCCCEEcCCCCCCCcccchhh--------h
Q 042869 390 NLQTLSLENCKLGD--MAI-IGDLKKLEILTLRGSNMQKL-VEEIGRL--TQLRLLDLSNCSKLKVIPAYV--------I 455 (707)
Q Consensus 390 ~L~~L~l~~~~~~~--~~~-i~~l~~L~~L~l~~~~l~~l-p~~i~~l--~~L~~L~l~~~~~~~~~p~~~--------~ 455 (707)
+|++|++++|.++. +.. ++++++|++|++++|.+..+ |..+..+ .+|+.|++++|.. ..++... +
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBC-TTCSTTCTTHHHHCCT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcc-cccchhhccccccccc
Confidence 99999999999887 333 88999999999999988755 4445555 6778888877543 3333211 2
Q ss_pred hCCCCCcEEEccCCCcccccccccccccccccHHHhhc---CCCCcEEEEeeccCCCC-------C----CChh--hccc
Q 042869 456 SSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNN---LSKLTSLEILIQDEKAL-------P----RDLS--FFKM 519 (707)
Q Consensus 456 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~~~~~-------p----~~l~--~~~~ 519 (707)
..+++|++|++++|.+. ...+..+.. .++|+.|+++++..... + ..+. ..++
T Consensus 209 ~~~~~L~~L~Ls~n~l~------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFK------------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTTCEEEEEECTTSCCC------------HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred cccceeeeEecCCCccc------------ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 24577888888887653 112222222 24555555544321100 0 0011 1234
Q ss_pred ceEEEEEecceeccCC--CCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccc
Q 042869 520 LQRYRILIGYWWSVGP--SDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLE 597 (707)
Q Consensus 520 L~~L~l~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~ 597 (707)
|+.|+++.+......+ .....++..|.+..+.....++..+..+++|+.|+++++. ++.+... .+..+++|+
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----~~~~l~~L~ 350 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSR-----MFENLDKLE 350 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGG-----GGTTCTTCC
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChh-----HhcCcccCC
Confidence 5555554444332221 1122334444444444334444344568999999999874 4444322 234589999
Q ss_pred eeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcc
Q 042869 598 SLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQN 659 (707)
Q Consensus 598 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 659 (707)
.|+++++ .++.+. +.....+++|++|++.+ ++++.+++. .+..+++|++|++++++-
T Consensus 351 ~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 351 VLDLSYN-HIRALG--DQSFLGLPNLKELALDT-NQLKSVPDG-IFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EEECCSS-CCCEEC--TTTTTTCTTCCEEECCS-SCCSCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred EEECCCC-cccccC--hhhccccccccEEECCC-CccccCCHh-HhccCCcccEEEccCCCc
Confidence 9999986 555553 33456789999999999 588888663 457899999999997653
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=9.5e-23 Score=214.27 Aligned_cols=303 Identities=14% Similarity=0.111 Sum_probs=220.7
Q ss_pred cccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCE
Q 042869 317 DTLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQT 393 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 393 (707)
.....++.+++.++.+..+|. +..+++|++|+++++.+..+++..|..+++|++|++++|.+..+| ..++.+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 345788899999988887776 347889999999999888888877889999999999999988864 55789999999
Q ss_pred EEecCCCCCC-ccc-ccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCC
Q 042869 394 LSLENCKLGD-MAI-IGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESP 470 (707)
Q Consensus 394 L~l~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 470 (707)
|++++|.++. +.. ++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++ ++.+++|+.|+++.|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccccc
Confidence 9999999887 333 588999999999999888765 457889999999998854 44444 4578888888888876
Q ss_pred cccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCC
Q 042869 471 IEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNG 550 (707)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~ 550 (707)
+.. +...++|++|++++|....+|... .++|+.|.++.+.............+..|.+..+
T Consensus 198 l~~-----------------~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 198 LST-----------------LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp CSE-----------------EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred ccc-----------------cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcccHHHcCCCCccEEECCCC
Confidence 541 223345666666666655554432 3566666666554433322223344555555444
Q ss_pred cceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEecc
Q 042869 551 ANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVER 630 (707)
Q Consensus 551 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~ 630 (707)
......+..+..+++|+.|+++++. ++.++.. ...+|+|+.|+++++ .++.+ +.....+++|+.|++.+
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------GQPIPTLKVLDLSHN-HLLHV---ERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------SSCCTTCCEEECCSS-CCCCC---GGGHHHHTTCSEEECCS
T ss_pred cCCCcChhHccccccCCEEECCCCc-CcccCcc------cCCCCCCCEEECCCC-cceec---CccccccCcCCEEECCC
Confidence 4444444445568999999999864 5554332 245899999999997 67666 34456789999999999
Q ss_pred CCCcccccchhhhccCCCCcEEEEccCc
Q 042869 631 CDKLKKVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 631 C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
| .++.++ ...+++|++|++++++
T Consensus 328 N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 328 N-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp S-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred C-ccceeC----chhhccCCEEEcCCCC
Confidence 5 677774 3678999999999865
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=231.06 Aligned_cols=329 Identities=20% Similarity=0.182 Sum_probs=201.8
Q ss_pred EEEecccccCCCCccccccceEEeccCCCCCCC--CCCCCCCccceeeeccc-cccccCchhhcCCCCccEEEecCCCcc
Q 042869 303 VEIEVVALTSWPDKDTLKVCTAISLNNSNISEP--PQGFECPQLRFLCIGYH-ASLRIPSNFFTGMTELRVLDFTQMYLL 379 (707)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~ 379 (707)
++.....+...|. .+..+++|++.+|.+..+ ..+..+++|++|++++| ....+++..|.++++|++|++++|.+.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 3344444555555 667888888888887653 34558888888888877 455676677888888888888888888
Q ss_pred cC-CccccccCCCCEEEecCCCCCC--ccc--ccCCCCCcEEEcCCCchhhc--hHHhhcCcCCCEEcCCCCCCCcccch
Q 042869 380 AL-PSSLGLLQNLQTLSLENCKLGD--MAI--IGDLKKLEILTLRGSNMQKL--VEEIGRLTQLRLLDLSNCSKLKVIPA 452 (707)
Q Consensus 380 ~l-p~~i~~l~~L~~L~l~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~ 452 (707)
.+ |..++.+++|++|+|++|.+++ +.. ++++++|++|++++|.+..+ +..++++++|++|++++|......+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 74 7788888888888888888775 433 78888888888888887755 35678888888888888665554554
Q ss_pred hhhhCC--CCCcEEEccCCCcccccccccccccccccHHHhhcCC------CCcEEEEeeccCC-CCCCChhh---cccc
Q 042869 453 YVISSL--SRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLS------KLTSLEILIQDEK-ALPRDLSF---FKML 520 (707)
Q Consensus 453 ~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~p~~l~~---~~~L 520 (707)
. +..+ ++|+.|+++.|.+.. ..+..++.++ .|+.|++++|... ..|..+.. ..++
T Consensus 167 ~-l~~l~~~~L~~L~L~~n~l~~------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 167 E-LEPLQGKTLSFFSLAANSLYS------------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp G-GHHHHHCSSCCCEECCSBSCC------------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred H-cccccCCccceEECCCCcccc------------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 4 5666 788888888887642 1111222222 4888888877532 33333321 1344
Q ss_pred eEEEEEecceecc-------------CCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccC
Q 042869 521 QRYRILIGYWWSV-------------GPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGRE 587 (707)
Q Consensus 521 ~~L~l~~~~~~~~-------------~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 587 (707)
..+.+..+..... .......++..|.+..+......+..+..+++|+.|++.++. ++.+...
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~---- 308 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADE---- 308 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTT----
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChH----
Confidence 5554431111000 000011334444444444333333334456677777776643 2222211
Q ss_pred cccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccC
Q 042869 588 ARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSC 657 (707)
Q Consensus 588 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 657 (707)
.+..+++|+.|+++++ .++.+. +.....+++|+.|++.++ +++.+++. .+..+++|++|++++|
T Consensus 309 -~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 309 -AFYGLDNLQVLNLSYN-LLGELY--SSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN 372 (844)
T ss_dssp -TTTTCSSCCEEEEESC-CCSCCC--SCSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred -HhcCCCCCCEEECCCC-CCCccC--HHHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence 2334667777777664 344332 223345677777777764 56666443 2356677777777765
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=7.5e-22 Score=213.43 Aligned_cols=312 Identities=19% Similarity=0.202 Sum_probs=234.8
Q ss_pred cceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCC
Q 042869 344 LRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRG 420 (707)
Q Consensus 344 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~ 420 (707)
-+.++..++....+|..+ .+++++|++++|.+..+ |..+..+++|++|+|++|.++. +..++++++|++|++++
T Consensus 13 ~~~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 356778888888888754 46899999999999996 5789999999999999999887 57899999999999999
Q ss_pred CchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcE
Q 042869 421 SNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTS 499 (707)
Q Consensus 421 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 499 (707)
|.+..+|.. +.++++|++|++++|......|. .+.++++|+.|++++|.+. ......+..+++|++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLV------------YISHRAFSGLNSLEQ 156 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCC------------EECTTSSTTCTTCCE
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccc------------eeChhhccCCCCCCE
Confidence 999988865 68999999999999765444444 4899999999999999875 223346788999999
Q ss_pred EEEeeccCCCCCCC-hhhcccceEEEEEecceeccCC--CCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCC
Q 042869 500 LEILIQDEKALPRD-LSFFKMLQRYRILIGYWWSVGP--SDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPD 576 (707)
Q Consensus 500 L~l~~~~~~~~p~~-l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 576 (707)
|++++|....+|.. +..+++|+.|.+..+......+ .....++..|.+..+......+.......+|+.|+++++.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~- 235 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN- 235 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-
Confidence 99999998888754 6789999999998876544332 2233455555554433222221111234589999998864
Q ss_pred cchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEcc
Q 042869 577 IKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSS 656 (707)
Q Consensus 577 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 656 (707)
++.++.. .+..+++|+.|+++++ .++.++. .....+++|+.|++.++ +++.+.+. .+..+++|++|++++
T Consensus 236 l~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 236 LTAVPYL-----AVRHLVYLRFLNLSYN-PISTIEG--SMLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSG 305 (477)
T ss_dssp CCSCCHH-----HHTTCTTCCEEECCSS-CCCEECT--TSCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCS
T ss_pred ccccCHH-----HhcCccccCeeECCCC-cCCccCh--hhccccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCC
Confidence 5554422 2345889999999986 4666532 23456899999999984 77877554 346889999999999
Q ss_pred CcchhhhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 657 CQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 657 C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
| .+..++... +..+++|++|+++++|
T Consensus 306 N-~l~~~~~~~------------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 306 N-QLTTLEESV------------FHSVGNLETLILDSNP 331 (477)
T ss_dssp S-CCSCCCGGG------------BSCGGGCCEEECCSSC
T ss_pred C-cCceeCHhH------------cCCCcccCEEEccCCC
Confidence 8 666665422 2368999999999887
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.3e-21 Score=219.99 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=119.9
Q ss_pred EEecccccCCCCccccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC
Q 042869 304 EIEVVALTSWPDKDTLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL 381 (707)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 381 (707)
++....+...|. ..+..+++|++++|.+..++. +..+++|++|++++|.+..++++.|.++++|++|++++|.+..+
T Consensus 37 ~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 37 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp ECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 333334444443 356789999999999988653 56899999999999999999999999999999999999999998
Q ss_pred Cc-cccccCCCCEEEecCCCCCCc--ccccCCCCCcEEEcCCCchhh--chHHhhcCcCCCEEcCCCCCC
Q 042869 382 PS-SLGLLQNLQTLSLENCKLGDM--AIIGDLKKLEILTLRGSNMQK--LVEEIGRLTQLRLLDLSNCSK 446 (707)
Q Consensus 382 p~-~i~~l~~L~~L~l~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~ 446 (707)
|. .|+.+.+|++|++++|.++.. ..++++++|++|++++|.+.. +|..++.+++|++|++++|..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 75 589999999999999999883 458999999999999998874 578889999999999998644
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=7.9e-22 Score=227.72 Aligned_cols=307 Identities=17% Similarity=0.150 Sum_probs=196.1
Q ss_pred CccccccceEEeccCCCCC-C--CCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCcc--cccc
Q 042869 315 DKDTLKVCTAISLNNSNIS-E--PPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSS--LGLL 388 (707)
Q Consensus 315 ~~~~~~~~~~l~l~~~~~~-~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~--i~~l 388 (707)
.......++.|++.+|... . +..+..+++|++|++++|.+..+++..|.++++|++|++++|.+.. .|.. ++.+
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 3456778999999998543 2 3346689999999999999999888889999999999999999987 5655 8999
Q ss_pred CCCCEEEecCCCCCC--c-ccccCCCCCcEEEcCCCchhh-chHHhhcC--cCCCEEcCCCCCCCcccchhhhhCCCC--
Q 042869 389 QNLQTLSLENCKLGD--M-AIIGDLKKLEILTLRGSNMQK-LVEEIGRL--TQLRLLDLSNCSKLKVIPAYVISSLSR-- 460 (707)
Q Consensus 389 ~~L~~L~l~~~~~~~--~-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l--~~L~~L~l~~~~~~~~~p~~~~~~l~~-- 460 (707)
++|++|++++|.++. + ..++++++|++|++++|.+.. .|..+..+ ++|+.|++++|......|.. ++++.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCcc
Confidence 999999999999877 2 578999999999999998874 45666666 89999999998777666654 455554
Q ss_pred ----CcEEEccCCCccccccccccccc------------------------ccccHHHhhc--CCCCcEEEEeeccCCCC
Q 042869 461 ----LEELYIGESPIEWGKVGGVDGER------------------------RNASLDELNN--LSKLTSLEILIQDEKAL 510 (707)
Q Consensus 461 ----L~~L~l~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~--l~~L~~L~l~~~~~~~~ 510 (707)
|+.|++++|.+............ .......+.. .++|+.|++++|....+
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 99999999876422211110000 0000111222 26788888887776554
Q ss_pred -CCChhhcccceEEEEEecceeccCC--CCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccC
Q 042869 511 -PRDLSFFKMLQRYRILIGYWWSVGP--SDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGRE 587 (707)
Q Consensus 511 -p~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 587 (707)
|..+..+++|+.|+++.+......+ .....++..|.+..+......+..+..+++|+.|+++++. ++.+...
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~---- 356 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQ---- 356 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSS----
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChh----
Confidence 4455778888888887766443322 1122333444443333222222223345555555555532 2222211
Q ss_pred cccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccc
Q 042869 588 ARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKV 637 (707)
Q Consensus 588 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 637 (707)
.+..+++|+.|+++++ .++.+ ..+++|+.|.+.++ +++.+
T Consensus 357 -~~~~l~~L~~L~Ls~N-~l~~i-------~~~~~L~~L~l~~N-~l~~l 396 (844)
T 3j0a_A 357 -TFKFLEKLQTLDLRDN-ALTTI-------HFIPSIPDIFLSGN-KLVTL 396 (844)
T ss_dssp -CSCSCCCCCEEEEETC-CSCCC-------SSCCSCSEEEEESC-CCCCC
T ss_pred -hhcCCCCCCEEECCCC-CCCcc-------cCCCCcchhccCCC-Ccccc
Confidence 1233555555555553 23332 11455555555552 44444
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=218.50 Aligned_cols=349 Identities=16% Similarity=0.120 Sum_probs=231.4
Q ss_pred cccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEe
Q 042869 319 LKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSL 396 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 396 (707)
...+++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+..+|.. .+++|++|++
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 378999999999998765 356899999999999999998777899999999999999999998887 8999999999
Q ss_pred cCCCCCC---cccccCCCCCcEEEcCCCchhhchHHhhcCcCC--CEEcCCCCCC--Ccccchhhhh-------------
Q 042869 397 ENCKLGD---MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQL--RLLDLSNCSK--LKVIPAYVIS------------- 456 (707)
Q Consensus 397 ~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~------------- 456 (707)
++|.++. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|.. +.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEecc
Confidence 9999875 4789999999999999998875 346777778 8888887655 3333322 22
Q ss_pred -------------CCCCCcEEEccCCC------------------------------ccccc------------c---cc
Q 042869 457 -------------SLSRLEELYIGESP------------------------------IEWGK------------V---GG 478 (707)
Q Consensus 457 -------------~l~~L~~L~l~~~~------------------------------~~~~~------------~---~~ 478 (707)
++++|+.|++.+|. +.... . ..
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 23334444333332 11000 0 00
Q ss_pred cccccccccHHHh-----hcCC--------------------------CCcEEEEeeccCCCCCCChhhcccceEEEEEe
Q 042869 479 VDGERRNASLDEL-----NNLS--------------------------KLTSLEILIQDEKALPRDLSFFKMLQRYRILI 527 (707)
Q Consensus 479 ~~~~~~~~~~~~l-----~~l~--------------------------~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~ 527 (707)
......+..+..+ +.++ +|+.|+++++.....+. ...+++|+.|+++.
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeEC
Confidence 0000000111111 2222 33334443333222210 14567788888877
Q ss_pred cceeccCC--CCCccceEEeeecCCcceecc--hhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccC
Q 042869 528 GYWWSVGP--SDGISRMFRLKLTNGANICLN--EGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRD 603 (707)
Q Consensus 528 ~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 603 (707)
+......+ .....++..|.+..+.....+ +.....+++|+.|+++++.-...++.. ....+++|+.|++++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----DCSWTKSLLSLNMSS 408 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----SCCCCTTCCEEECCS
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----hhccCccCCEEECcC
Confidence 66544222 233456666666655544322 234567899999999987643325432 234589999999998
Q ss_pred ccccccccccccccccC-CCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCccee
Q 042869 604 LRNLEEICRGPLTAESF-CKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIE 682 (707)
Q Consensus 604 ~~~l~~~~~~~~~~~~~-~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~ 682 (707)
+.--..++ ..+ ++|+.|++++| +++.+|.. +..+++|++|++++| .+.++|... +..
T Consensus 409 N~l~~~~~------~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~------------~~~ 466 (520)
T 2z7x_B 409 NILTDTIF------RCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPDGI------------FDR 466 (520)
T ss_dssp SCCCGGGG------GSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCTTT------------TTT
T ss_pred CCCCcchh------hhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCHHH------------hcc
Confidence 74223331 123 79999999996 88888653 248999999999998 677776532 337
Q ss_pred ecccceeeccCcccccccc
Q 042869 683 VTQLRTLELRSLAQLTSFC 701 (707)
Q Consensus 683 l~~L~~L~l~~cp~L~~i~ 701 (707)
+++|++|+++++| +..-|
T Consensus 467 l~~L~~L~l~~N~-~~c~c 484 (520)
T 2z7x_B 467 LTSLQKIWLHTNP-WDCSC 484 (520)
T ss_dssp CTTCCEEECCSSC-BCCCH
T ss_pred CCcccEEECcCCC-CcccC
Confidence 8999999999987 44333
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.5e-22 Score=212.17 Aligned_cols=311 Identities=17% Similarity=0.158 Sum_probs=227.5
Q ss_pred CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEE
Q 042869 337 QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEIL 416 (707)
Q Consensus 337 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L 416 (707)
....+++|++|+++++.+..+| .+..+++|++|++++|.+..+| ++.+++|++|++++|.++..+ ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEE
Confidence 3446899999999999998886 3789999999999999999986 899999999999999998864 8999999999
Q ss_pred EcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCC
Q 042869 417 TLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSK 496 (707)
Q Consensus 417 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 496 (707)
++++|.+..+| ++++++|++|++++|. ++.++ ++++++|+.|+++.|... ... .+..+++
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~------------~~~--~~~~l~~ 171 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI------------TKL--DVTPQTQ 171 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC------------CCC--CCTTCTT
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc------------ccc--ccccCCc
Confidence 99999999886 8999999999999965 44454 678999999999998532 111 3678899
Q ss_pred CcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCC
Q 042869 497 LTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPD 576 (707)
Q Consensus 497 L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 576 (707)
|+.|++++|....+| +..+++|+.|.++.+..... +.....++..|.+..+.....+ ...+++|+.|+++++.
T Consensus 172 L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~- 244 (457)
T 3bz5_A 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP- 244 (457)
T ss_dssp CCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC-
T ss_pred CCEEECCCCccceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc-
Confidence 999999999988887 77899999999987765443 3334455666666555544443 3468899999998754
Q ss_pred cchhhhhcccCcccccccccce----------eeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccC
Q 042869 577 IKNILCELGREARTTAFSLLES----------LFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGL 646 (707)
Q Consensus 577 l~~~~~~~~~~~~~~~~~~L~~----------L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l 646 (707)
++.++ ...+++|+. |++++|..+..+ ..+.+++|+.|++++|+.++.++. ..
T Consensus 245 l~~~~--------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~Ls~n~~l~~l~~-----~~ 306 (457)
T 3bz5_A 245 LTELD--------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-----QAEGCRKIKELDVTHNTQLYLLDC-----QA 306 (457)
T ss_dssp CSCCC--------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-----ECTTCTTCCCCCCTTCTTCCEEEC-----TT
T ss_pred CCCcC--------HHHCCCCCEEeccCCCCCEEECCCCccCCcc-----cccccccCCEEECCCCcccceecc-----CC
Confidence 44332 223555554 444444434333 235678999999999988877753 23
Q ss_pred CCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcccccccccc
Q 042869 647 QQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLTSFCIL 703 (707)
Q Consensus 647 ~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~i~~~ 703 (707)
++|+.|++++|++|+.+.-..-... ...+..+++|++|+++++. |+.++++
T Consensus 307 ~~L~~L~l~~~~~L~~L~L~~N~l~-----~l~l~~l~~L~~L~l~~N~-l~~l~~L 357 (457)
T 3bz5_A 307 AGITELDLSQNPKLVYLYLNNTELT-----ELDVSHNTKLKSLSCVNAH-IQDFSSV 357 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCCCS-----CCCCTTCTTCSEEECCSSC-CCBCTTG
T ss_pred CcceEechhhcccCCEEECCCCccc-----ccccccCCcCcEEECCCCC-CCCcccc
Confidence 5566666666666655432111110 0125578999999988753 5555444
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2.1e-21 Score=219.76 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=111.5
Q ss_pred ccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 394 (707)
.+..+++|++.+|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.+..+|. .|+.+++|++|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 34678888888887776654 4577888888888887777777777888888888888888887776 47888888888
Q ss_pred EecCCCCCC--cccccCCCCCcEEEcCCCchhhc-hHHhhcCcCCCEEcCCCCCCCcccchhhhh--CCCCCcEEEccCC
Q 042869 395 SLENCKLGD--MAIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIPAYVIS--SLSRLEELYIGES 469 (707)
Q Consensus 395 ~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~--~l~~L~~L~l~~~ 469 (707)
++++|.++. +..++++++|++|++++|.+... |..++++++|++|++++|.. ..++...+. .+++|+.|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCC
Confidence 888888766 24677888888888888877654 34567788888888877543 344432232 4577888888777
Q ss_pred Ccc
Q 042869 470 PIE 472 (707)
Q Consensus 470 ~~~ 472 (707)
.+.
T Consensus 182 ~l~ 184 (680)
T 1ziw_A 182 QIK 184 (680)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.6e-22 Score=220.65 Aligned_cols=302 Identities=14% Similarity=0.121 Sum_probs=220.3
Q ss_pred ccccceEEeccCCCCCCCCCC--CCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPPQG--FECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 394 (707)
....++.+++.++.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|++++|.+..+|+ .++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356778888888888776653 368899999999988888888778899999999999999888654 46889999999
Q ss_pred EecCCCCCC-ccc-ccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc
Q 042869 395 SLENCKLGD-MAI-IGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 395 ~l~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
+|++|.++. |+. ++++++|++|++++|.+..++. .++.+++|++|++++|. +..++ ++.+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc
Confidence 999999887 333 5889999999999998887654 58889999999998854 44444 45688888888888865
Q ss_pred ccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCc
Q 042869 472 EWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGA 551 (707)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~ 551 (707)
.. +...++|+.|++++|....+|..+ .++|+.|.++.+.............+..|.+..+.
T Consensus 205 ~~-----------------l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 205 ST-----------------LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp SE-----------------EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred cc-----------------ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc
Confidence 41 233456777777776665555443 24666676665554333222333455555555555
Q ss_pred ceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccC
Q 042869 552 NICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERC 631 (707)
Q Consensus 552 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C 631 (707)
.....+..++.+++|+.|+++++. ++.++.. ...+|+|+.|+++++ .+..+ +.....+++|+.|++++|
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------~~~l~~L~~L~Ls~N-~l~~i---~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNNR-LVALNLY------GQPIPTLKVLDLSHN-HLLHV---ERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTSC-CCEEECS------SSCCTTCCEEECCSS-CCCCC---GGGHHHHTTCSEEECCSS
T ss_pred cCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------cccCCCCcEEECCCC-CCCcc---CcccccCCCCCEEECCCC
Confidence 444444455678999999999854 5555432 245899999999986 56666 445577999999999995
Q ss_pred CCcccccchhhhccCCCCcEEEEccCc
Q 042869 632 DKLKKVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 632 ~~L~~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
.+..++ ...+++|+.|++++++
T Consensus 335 -~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 335 -SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CCCCCC----CCTTCCCSEEECCSSC
T ss_pred -CCCCcC----hhhcCCCCEEEeeCCC
Confidence 677764 3578999999999876
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4e-21 Score=217.47 Aligned_cols=174 Identities=22% Similarity=0.267 Sum_probs=141.1
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKL 401 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~ 401 (707)
+.++.+++.+..+|.... +++++|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 456777777777775432 7999999999999999998899999999999999999885 67799999999999999999
Q ss_pred CC-c-ccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 402 GD-M-AIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 402 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
+. + ..++++++|++|++++|.+..+| ..++++++|++|++++|...+..|.. ++++++|++|++++|.+.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~------ 158 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQ------ 158 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCC------
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCccc------
Confidence 88 3 35999999999999999998877 56899999999999997665554543 789999999999999764
Q ss_pred cccccccccHHHhh--cCCCCcEEEEeeccCCCC
Q 042869 479 VDGERRNASLDELN--NLSKLTSLEILIQDEKAL 510 (707)
Q Consensus 479 ~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~ 510 (707)
......+. .+++|++|++++|....+
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred ------ccCHHHhhccccccccEEECCCCccccc
Confidence 22222332 346777777777665444
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=9.4e-22 Score=217.04 Aligned_cols=346 Identities=15% Similarity=0.080 Sum_probs=227.9
Q ss_pred ccccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEE
Q 042869 318 TLKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLS 395 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 395 (707)
.+..++.|++.+|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+..+|.. .+++|++|+
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 3478999999999998876 466899999999999999999888899999999999999999999987 899999999
Q ss_pred ecCCCCCC---cccccCCCCCcEEEcCCCchhhchHHhhcCcCC--CEEcCCCCCC--Ccccchh---------------
Q 042869 396 LENCKLGD---MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQL--RLLDLSNCSK--LKVIPAY--------------- 453 (707)
Q Consensus 396 l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~--------------- 453 (707)
+++|.++. |..++++++|++|++++|.+... .+..+++| ++|++++|.. ....|..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 99999876 36899999999999999987652 35566666 9999888655 2333322
Q ss_pred ----------hhhCCCCCcEEEccCCCccccc------------------cc--ccccccccccHHHhhcCCCCcEEEEe
Q 042869 454 ----------VISSLSRLEELYIGESPIEWGK------------------VG--GVDGERRNASLDELNNLSKLTSLEIL 503 (707)
Q Consensus 454 ----------~~~~l~~L~~L~l~~~~~~~~~------------------~~--~~~~~~~~~~~~~l~~l~~L~~L~l~ 503 (707)
.+.++++|+.|++..|...... .. ..........+.. ...++|++|+++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 284 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY 284 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence 1123445555555544200000 00 0000000000000 011234444444
Q ss_pred eccCC-CCCCCh-----------------------------------------------------hhcccceEEEEEecc
Q 042869 504 IQDEK-ALPRDL-----------------------------------------------------SFFKMLQRYRILIGY 529 (707)
Q Consensus 504 ~~~~~-~~p~~l-----------------------------------------------------~~~~~L~~L~l~~~~ 529 (707)
+|... .+|..+ ..+++|+.|.++.+.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 33322 222221 456778888887766
Q ss_pred eeccCC--CCCccceEEeeecCCcceecch--hHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCcc
Q 042869 530 WWSVGP--SDGISRMFRLKLTNGANICLNE--GHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLR 605 (707)
Q Consensus 530 ~~~~~~--~~~~~~~~~L~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 605 (707)
.....+ .....++..|.+..+.....+. ..+..+++|+.|+++++.-...++.. ....+++|+.|+++++.
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----TCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----CCCCCTTCCEEECCSSC
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----hhcCcccCCEEECCCCC
Confidence 544222 2234456666665554443332 22456899999999886633224332 23457999999999864
Q ss_pred ccccccccccccccC-CCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeec
Q 042869 606 NLEEICRGPLTAESF-CKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVT 684 (707)
Q Consensus 606 ~l~~~~~~~~~~~~~-~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~ 684 (707)
++.. ....+ ++|+.|++++| +++.+|+. . ..+++|++|+++++ .+.++|... +..++
T Consensus 440 -l~~~-----~~~~l~~~L~~L~L~~N-~l~~ip~~-~-~~l~~L~~L~L~~N-~l~~l~~~~------------~~~l~ 497 (562)
T 3a79_B 440 -LTGS-----VFRCLPPKVKVLDLHNN-RIMSIPKD-V-THLQALQELNVASN-QLKSVPDGV------------FDRLT 497 (562)
T ss_dssp -CCGG-----GGSSCCTTCSEEECCSS-CCCCCCTT-T-TSSCCCSEEECCSS-CCCCCCTTS------------TTTCT
T ss_pred -CCcc-----hhhhhcCcCCEEECCCC-cCcccChh-h-cCCCCCCEEECCCC-CCCCCCHHH------------HhcCC
Confidence 4322 11224 69999999996 88888654 2 38899999999997 566776531 33789
Q ss_pred ccceeeccCcc
Q 042869 685 QLRTLELRSLA 695 (707)
Q Consensus 685 ~L~~L~l~~cp 695 (707)
+|++|+++++|
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 99999999887
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.5e-21 Score=199.13 Aligned_cols=231 Identities=22% Similarity=0.310 Sum_probs=161.1
Q ss_pred CCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCC
Q 042869 364 GMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLS 442 (707)
Q Consensus 364 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 442 (707)
....+++|+++++.+..+|..++.+++|++|++++|.++. |..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3578889999999988899889899999999999998877 567888999999999999888899889999999999999
Q ss_pred CCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceE
Q 042869 443 NCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQR 522 (707)
Q Consensus 443 ~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~ 522 (707)
+|...+.+|.. ++. ..+ ...+..+++|++|++++|....+|..+..+++|+.
T Consensus 159 ~n~~~~~~p~~-~~~------~~~---------------------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 159 ACPELTELPEP-LAS------TDA---------------------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210 (328)
T ss_dssp EETTCCCCCSC-SEE------EC----------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCE
T ss_pred CCCCccccChh-Hhh------ccc---------------------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCE
Confidence 98888888864 322 000 01244566677777777666666666666666666
Q ss_pred EEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeecc
Q 042869 523 YRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLR 602 (707)
Q Consensus 523 L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 602 (707)
|.++.+..... +. ....+++|+.|+++++.....++.. ...+++|+.|+++
T Consensus 211 L~L~~N~l~~l----------------------~~-~l~~l~~L~~L~Ls~n~~~~~~p~~------~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 211 LKIRNSPLSAL----------------------GP-AIHHLPKLEELDLRGCTALRNYPPI------FGGRAPLKRLILK 261 (328)
T ss_dssp EEEESSCCCCC----------------------CG-GGGGCTTCCEEECTTCTTCCBCCCC------TTCCCCCCEEECT
T ss_pred EEccCCCCCcC----------------------ch-hhccCCCCCEEECcCCcchhhhHHH------hcCCCCCCEEECC
Confidence 66654432110 11 1224566777777766655544432 2347777777777
Q ss_pred CccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEcc
Q 042869 603 DLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSS 656 (707)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 656 (707)
+|.....+ +.....+++|++|++++|+.++.+|. .+..+++|+.+.+..
T Consensus 262 ~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 262 DCSNLLTL---PLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCBC---CTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred CCCchhhc---chhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 77666666 34456677777777777777777754 346677777777653
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.6e-21 Score=195.36 Aligned_cols=289 Identities=17% Similarity=0.211 Sum_probs=169.4
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
+++.++++++....+|..+ .++|++|++++|.+..+ |..++.+++|++|++++|.++. +..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666655555543 24666666666666664 3456666666666666666655 3456666666666666
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcE
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTS 499 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 499 (707)
+|.+..+|..+. ++|++|++++| .+..+|...+.++++|+.|++++|.+.. ....+..+..+ +|+.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN----------SGFEPGAFDGL-KLNY 176 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG----------GGSCTTSSCSC-CCSC
T ss_pred CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc----------CCCCcccccCC-ccCE
Confidence 666666665443 66777777664 3344554446667777777776665531 01122334444 6777
Q ss_pred EEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcch
Q 042869 500 LEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKN 579 (707)
Q Consensus 500 L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 579 (707)
|++++|....+|..+. ++|+.|.++.+...... ...+..+++|+.|+++++. ++.
T Consensus 177 L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~----------------------~~~l~~l~~L~~L~L~~N~-l~~ 231 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIE----------------------LEDLLRYSKLYRLGLGHNQ-IRM 231 (332)
T ss_dssp CBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCC----------------------TTSSTTCTTCSCCBCCSSC-CCC
T ss_pred EECcCCCCCccCcccc--CCCCEEECCCCcCCccC----------------------HHHhcCCCCCCEEECCCCc-CCc
Confidence 7777776666666542 56666665443322111 1111246777888887753 333
Q ss_pred hhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhcc-----CCCCcEEEE
Q 042869 580 ILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRG-----LQQLQSVKV 654 (707)
Q Consensus 580 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~-----l~~L~~L~i 654 (707)
+... ....+++|+.|+++++ .++.+ +.....+++|+.|++.+ ++++.+++..+... .++|+.|++
T Consensus 232 ~~~~-----~~~~l~~L~~L~L~~N-~l~~l---p~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 232 IENG-----SLSFLPTLRELHLDNN-KLSRV---PAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CCTT-----GGGGCTTCCEEECCSS-CCCBC---CTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred CChh-----HhhCCCCCCEEECCCC-cCeec---ChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEe
Confidence 3221 2345788888888875 56666 34456788899999988 47787765433222 577889999
Q ss_pred ccCcchh-hhhcccccccccCCCCCcceeecccceeeccCcc
Q 042869 655 SSCQNME-VIFAAERGDESSNNNGTEVIEVTQLRTLELRSLA 695 (707)
Q Consensus 655 ~~C~~l~-~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp 695 (707)
.+++-.. .++.. ....+++|+.|+++++.
T Consensus 302 ~~N~~~~~~~~~~------------~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPA------------TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGG------------GGTTBCCSTTEEC----
T ss_pred ecCcccccccCcc------------cccccchhhhhhccccc
Confidence 8886431 22221 23367888888888775
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=4.5e-20 Score=189.06 Aligned_cols=289 Identities=16% Similarity=0.186 Sum_probs=157.9
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
+++.++++++....+|..+ .+.|++|++++|.+..++. .++.+++|++|++++|.++. +..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555555432 2455566666665555443 45556666666666665554 3455566666666666
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcE
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTS 499 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 499 (707)
+|.+..+|..+. ++|++|++++|. +..++...+.++++|+.|++++|.+.. .......+..+++|++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS----------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG----------GGBCTTGGGGCTTCCE
T ss_pred CCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc----------cCcChhhccCCCCcCE
Confidence 665555554433 566666666533 334444345666666666666655421 1122334556666666
Q ss_pred EEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcch
Q 042869 500 LEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKN 579 (707)
Q Consensus 500 L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 579 (707)
|++++|....+|..+. ++|+.|.++.+.... ..+..+..+++|+.|+++++. ++.
T Consensus 176 L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L~~L~Ls~n~-l~~ 230 (330)
T 1xku_A 176 IRIADTNITTIPQGLP--PSLTELHLDGNKITK----------------------VDAASLKGLNNLAKLGLSFNS-ISA 230 (330)
T ss_dssp EECCSSCCCSCCSSCC--TTCSEEECTTSCCCE----------------------ECTGGGTTCTTCCEEECCSSC-CCE
T ss_pred EECCCCccccCCcccc--ccCCEEECCCCcCCc----------------------cCHHHhcCCCCCCEEECCCCc-Cce
Confidence 6666666666665442 556666554332111 111122345677777777653 333
Q ss_pred hhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhh-----ccCCCCcEEEE
Q 042869 580 ILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIG-----RGLQQLQSVKV 654 (707)
Q Consensus 580 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~-----~~l~~L~~L~i 654 (707)
+... ....+++|+.|+++++ .++.+ +.....+++|++|++.+| .++.+++..+. ...++|+.|++
T Consensus 231 ~~~~-----~~~~l~~L~~L~L~~N-~l~~l---p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 231 VDNG-----SLANTPHLRELHLNNN-KLVKV---PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECTT-----TGGGSTTCCEEECCSS-CCSSC---CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred eChh-----hccCCCCCCEEECCCC-cCccC---ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 3221 2334778888888875 55555 334566788888888874 67777554331 12477888888
Q ss_pred ccCcchh-hhhcccccccccCCCCCcceeecccceeeccCc
Q 042869 655 SSCQNME-VIFAAERGDESSNNNGTEVIEVTQLRTLELRSL 694 (707)
Q Consensus 655 ~~C~~l~-~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 694 (707)
.+.+--. .++. .....+++|+.++++++
T Consensus 301 ~~N~~~~~~i~~------------~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 301 FSNPVQYWEIQP------------STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSSSCGGGSCG------------GGGTTCCCGGGEEC---
T ss_pred ecCcccccccCc------------cccccccceeEEEeccc
Confidence 8876421 1211 12235677888888765
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.9e-20 Score=191.98 Aligned_cols=289 Identities=15% Similarity=0.208 Sum_probs=214.6
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEec
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLE 397 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 397 (707)
...++.+.+.++.+..+|... .++|+.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 346788999988888777544 47999999999999998887899999999999999999885 7789999999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCc--ccchhhhhCCCCCcEEEccCCCccc
Q 042869 398 NCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLK--VIPAYVISSLSRLEELYIGESPIEW 473 (707)
Q Consensus 398 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l~~~~~~~ 473 (707)
+|.++. +..+. ++|++|++++|.+..+|.. +..+++|++|++++|.... ..|. .+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCc
Confidence 999887 44444 8999999999999888754 7889999999999965532 3343 36666 89999999987642
Q ss_pred ccccccccccccccHHHhhcCCCCcEEEEeeccCCCCC-CChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcc
Q 042869 474 GKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALP-RDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGAN 552 (707)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~ 552 (707)
.+..+ .++|++|++++|....++ ..+..+++|+.|.++.+.....
T Consensus 187 -------------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------------------- 232 (332)
T 2ft3_A 187 -------------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI------------------- 232 (332)
T ss_dssp -------------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-------------------
T ss_pred -------------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-------------------
Confidence 11111 268999999999887776 5678888999988866543221
Q ss_pred eecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCcccccccccccccc----ccCCCcCEEEe
Q 042869 553 ICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTA----ESFCKLKTIEV 628 (707)
Q Consensus 553 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~L~~L~i 628 (707)
++.....+++|+.|+++++ .++.++.. ...+++|+.|+++++ .++.++...+.. ..++.|+.|++
T Consensus 233 ---~~~~~~~l~~L~~L~L~~N-~l~~lp~~------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 233 ---ENGSLSFLPTLRELHLDNN-KLSRVPAG------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp ---CTTGGGGCTTCCEEECCSS-CCCBCCTT------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred ---ChhHhhCCCCCCEEECCCC-cCeecChh------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence 1112346789999999886 45555543 345899999999985 577664333222 12678999999
Q ss_pred ccCCCcc-cccchhhhccCCCCcEEEEccCc
Q 042869 629 ERCDKLK-KVFPLVIGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 629 ~~C~~L~-~l~~~~~~~~l~~L~~L~i~~C~ 658 (707)
.+++-.. .+++ ....++++|+.|+++++.
T Consensus 302 ~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ecCcccccccCc-ccccccchhhhhhccccc
Confidence 9976432 3444 345789999999998875
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=4.2e-19 Score=199.57 Aligned_cols=147 Identities=22% Similarity=0.323 Sum_probs=122.9
Q ss_pred EEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCCCC
Q 042869 324 AISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCKLG 402 (707)
Q Consensus 324 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~ 402 (707)
..+..+.++..+|... -++++.|++++|.+..+++..|.++++|++|++++|.+..+|+ .|+.|++|++|+|++|+++
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3444455555565432 2589999999999999999889999999999999999999765 6899999999999999998
Q ss_pred C-c-ccccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCc-ccchhhhhCCCCCcEEEccCCCcc
Q 042869 403 D-M-AIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLK-VIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 403 ~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
. + ..++++++|++|++++|+++.+|. .++++++|++|++++|.... ..|.. ++.+++|++|++++|.+.
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccc
Confidence 8 3 568999999999999999998886 48999999999999965433 34554 789999999999998764
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.8e-19 Score=190.41 Aligned_cols=319 Identities=19% Similarity=0.138 Sum_probs=182.4
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
+..++.|++.+|.+..+|.. .++|+.|++++|.+..++.. .++|++|++++|.+..+| +++.+++|++|++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 45677777777777766643 36777777777776665531 257778888777777777 577777788888877
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
|.++..+.. ..+|++|++++|.+..+| .++++++|++|++++|. +..+|.. .++|+.|++++|.+.
T Consensus 163 N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~------ 228 (454)
T 1jl5_A 163 NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILE------ 228 (454)
T ss_dssp SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCS------
T ss_pred CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCC------
Confidence 777663221 247777787777777776 57777777777777754 3445542 257777777777653
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchh
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEG 558 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 558 (707)
..+ .++.+++|++|++++|....+|.. +++|+.|.++.+.....+... ..+..|.+..+.....+.
T Consensus 229 -------~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~--~~L~~L~ls~N~l~~l~~- 294 (454)
T 1jl5_A 229 -------ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELP--QSLTFLDVSENIFSGLSE- 294 (454)
T ss_dssp -------SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSEESC-
T ss_pred -------ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCccc--CcCCEEECcCCccCcccC-
Confidence 111 356777788888877777766653 367777777666544432222 344444444333322221
Q ss_pred HHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCccccc
Q 042869 559 HIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVF 638 (707)
Q Consensus 559 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 638 (707)
..++|+.|+++++. ++.++ ...++|+.|+++++ .++.++ ..+++|+.|++.+| +++.+|
T Consensus 295 ---~~~~L~~L~l~~N~-l~~i~---------~~~~~L~~L~Ls~N-~l~~lp------~~~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 295 ---LPPNLYYLNASSNE-IRSLC---------DLPPSLEELNVSNN-KLIELP------ALPPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp ---CCTTCCEEECCSSC-CSEEC---------CCCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCC
T ss_pred ---cCCcCCEEECcCCc-CCccc---------CCcCcCCEEECCCC-cccccc------ccCCcCCEEECCCC-cccccc
Confidence 12678888887753 33221 11358888988874 565552 12688999999885 777775
Q ss_pred chhhhccCCCCcEEEEccCcchh--hhhcccccccccCCCCCcceeecccceeeccCcccccc
Q 042869 639 PLVIGRGLQQLQSVKVSSCQNME--VIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLTS 699 (707)
Q Consensus 639 ~~~~~~~l~~L~~L~i~~C~~l~--~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~ 699 (707)
. .+++|++|++++|.--. .+|..................+++|++|++++++ ++.
T Consensus 354 ~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~ 410 (454)
T 1jl5_A 354 E-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE 410 (454)
T ss_dssp C-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred c-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCc
Confidence 4 36889999998874322 2332111000000000000123788888888875 443
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=3.8e-19 Score=189.35 Aligned_cols=303 Identities=17% Similarity=0.167 Sum_probs=229.4
Q ss_pred ccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCC
Q 042869 320 KVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENC 399 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 399 (707)
..++++++.++.+..+|.. .++|+.|++++|.+..+|.. +++|++|++++|.+..+|.. .++|++|++++|
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN 141 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc----cCCCcEEECCCCccCcccCC---CCCCCEEECcCC
Confidence 4578899999999887774 48999999999998888753 58999999999999887753 268999999999
Q ss_pred CCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccccc
Q 042869 400 KLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGV 479 (707)
Q Consensus 400 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 479 (707)
.++..+.++++++|++|++++|++..+|.. ..+|++|++++| .+..+|. ++++++|+.|++++|.+....
T Consensus 142 ~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~---- 211 (454)
T 1jl5_A 142 QLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLP---- 211 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC----
T ss_pred CCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCC----
Confidence 998866899999999999999999888854 469999999996 4566784 899999999999999864110
Q ss_pred ccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhH
Q 042869 480 DGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGH 559 (707)
Q Consensus 480 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 559 (707)
. ..++|++|++++|....+|. +..+++|+.|.++.+.....+... ..+..|.+..+.....+.
T Consensus 212 ------~------~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~l~~-- 274 (454)
T 1jl5_A 212 ------D------LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTDLPE-- 274 (454)
T ss_dssp ------C------CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSCCCC--
T ss_pred ------C------CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccccCc--
Confidence 0 12589999999999888885 789999999999887655443322 455555555444333333
Q ss_pred HHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccc
Q 042869 560 IMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFP 639 (707)
Q Consensus 560 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~ 639 (707)
.+++|+.|+++++. ++.++ ...++|+.|+++++ .++.++ ...++|++|++++ ++++.+|.
T Consensus 275 --~~~~L~~L~ls~N~-l~~l~---------~~~~~L~~L~l~~N-~l~~i~------~~~~~L~~L~Ls~-N~l~~lp~ 334 (454)
T 1jl5_A 275 --LPQSLTFLDVSENI-FSGLS---------ELPPNLYYLNASSN-EIRSLC------DLPPSLEELNVSN-NKLIELPA 334 (454)
T ss_dssp --CCTTCCEEECCSSC-CSEES---------CCCTTCCEEECCSS-CCSEEC------CCCTTCCEEECCS-SCCSCCCC
T ss_pred --ccCcCCEEECcCCc-cCccc---------CcCCcCCEEECcCC-cCCccc------CCcCcCCEEECCC-Cccccccc
Confidence 24788999998754 33322 11468999999875 455542 1125899999998 47777754
Q ss_pred hhhhccCCCCcEEEEccCcchhhhhcccccccccCCCCCcceeecccceeeccCcccccccc
Q 042869 640 LVIGRGLQQLQSVKVSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQLTSFC 701 (707)
Q Consensus 640 ~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~L~~i~ 701 (707)
.+++|++|++++| .+.++|. .+++|++|++++++ ++.+|
T Consensus 335 -----~~~~L~~L~L~~N-~l~~lp~----------------~l~~L~~L~L~~N~-l~~l~ 373 (454)
T 1jl5_A 335 -----LPPRLERLIASFN-HLAEVPE----------------LPQNLKQLHVEYNP-LREFP 373 (454)
T ss_dssp -----CCTTCCEEECCSS-CCSCCCC----------------CCTTCCEEECCSSC-CSSCC
T ss_pred -----cCCcCCEEECCCC-ccccccc----------------hhhhccEEECCCCC-CCcCC
Confidence 2689999999998 5665553 46899999999885 55433
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.5e-20 Score=187.78 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=113.3
Q ss_pred Cccceeeeccccccc---cCchhhcCCCCccEEEecC-CCccc-CCccccccCCCCEEEecCCCCCC--cccccCCCCCc
Q 042869 342 PQLRFLCIGYHASLR---IPSNFFTGMTELRVLDFTQ-MYLLA-LPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLE 414 (707)
Q Consensus 342 ~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~-~~~~~-lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~ 414 (707)
.+++.|+++++.+.. +| ..+.++++|++|++++ +.+.. +|..++.+++|++|++++|.++. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 456677777666653 44 3467777888888874 66654 77777778888888888777763 56677778888
Q ss_pred EEEcCCCchh-hchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCC-CCcEEEccCCCcccccccccccccccccHHHhh
Q 042869 415 ILTLRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLS-RLEELYIGESPIEWGKVGGVDGERRNASLDELN 492 (707)
Q Consensus 415 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (707)
+|++++|.+. .+|..++.+++|++|++++|...+.+|.. +++++ +|+.|++++|.+. ...+..+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~------------~~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT------------GKIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE------------EECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee------------ccCChHHh
Confidence 8888877776 56777777888888888776655566765 66776 7778877777653 23344555
Q ss_pred cCCCCcEEEEeeccCCC-CCCChhhcccceEEEEE
Q 042869 493 NLSKLTSLEILIQDEKA-LPRDLSFFKMLQRYRIL 526 (707)
Q Consensus 493 ~l~~L~~L~l~~~~~~~-~p~~l~~~~~L~~L~l~ 526 (707)
.++ |+.|++++|.... .|..+..+++|+.|.++
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 555 7777777666442 33344445555555553
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=189.66 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=129.1
Q ss_pred EeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCC
Q 042869 325 ISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGD 403 (707)
Q Consensus 325 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~ 403 (707)
.+..++.+..+|... .++|+.|++++|.+..++...+.++++|++|++++|.+..+ |..++.+++|++|++++|.++.
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 555666666665532 25777788877777777776677777888888877777774 4557777778888887777776
Q ss_pred -cc-cccCCCCCcEEEcCCCchhhchH--HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccccc
Q 042869 404 -MA-IIGDLKKLEILTLRGSNMQKLVE--EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGV 479 (707)
Q Consensus 404 -~~-~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 479 (707)
+. .++++++|++|++++|.+..+|. .+.++++|++|++++|..++.++...++++++|++|++++|.+.
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------- 187 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------- 187 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-------
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-------
Confidence 32 36777777777777777777765 56677777777777765566665444677777777777777653
Q ss_pred ccccccccHHHhhcCCCCcEEEEeeccCCCCCCCh-hhcccceEEEEEecc
Q 042869 480 DGERRNASLDELNNLSKLTSLEILIQDEKALPRDL-SFFKMLQRYRILIGY 529 (707)
Q Consensus 480 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l-~~~~~L~~L~l~~~~ 529 (707)
...+..+..+++|++|++++|....+|..+ ..+++|+.|+++.+.
T Consensus 188 -----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 188 -----SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred -----ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 223345666677777777777665555433 345666666665543
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.2e-20 Score=188.08 Aligned_cols=193 Identities=18% Similarity=0.214 Sum_probs=158.7
Q ss_pred ccceEEeccCCCCCC----CCCCCCCCccceeeecc-ccccccCchhhcCCCCccEEEecCCCcc-cCCccccccCCCCE
Q 042869 320 KVCTAISLNNSNISE----PPQGFECPQLRFLCIGY-HASLRIPSNFFTGMTELRVLDFTQMYLL-ALPSSLGLLQNLQT 393 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 393 (707)
..++.|++.++.+.. ++.+..+++|++|++++ |.+....+..+.++++|++|++++|.+. .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999998864 34456899999999994 7766444455899999999999999998 58999999999999
Q ss_pred EEecCCCCCC--cccccCCCCCcEEEcCCCchh-hchHHhhcCc-CCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 394 LSLENCKLGD--MAIIGDLKKLEILTLRGSNMQ-KLVEEIGRLT-QLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 394 L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
|++++|.++. |..++.+++|++|++++|.+. .+|..++.++ +|++|++++|...+.+|.. +..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence 9999999874 678999999999999999998 7899999998 9999999998776677775 77887 999999999
Q ss_pred CcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEE
Q 042869 470 PIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRIL 526 (707)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~ 526 (707)
.+. ...+..+..+++|+.|++++|.....+..+..+++|+.|+++
T Consensus 208 ~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 208 MLE------------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252 (313)
T ss_dssp EEE------------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred ccc------------CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECc
Confidence 875 345567889999999999998866444334444444444443
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=8.5e-19 Score=192.33 Aligned_cols=261 Identities=20% Similarity=0.166 Sum_probs=202.7
Q ss_pred cceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCC
Q 042869 321 VCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 321 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 400 (707)
.++.+++.++.+..+|.... ++|+.|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 47789999999888776444 899999999999888886 57899999999999999987 67899999999999
Q ss_pred CCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccc
Q 042869 401 LGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVD 480 (707)
Q Consensus 401 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 480 (707)
++..+. .+++|++|++++|+++.+|.. +++|++|++++| .+..+|. .+.+|+.|++.+|.+..
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~------- 175 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS------- 175 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC-------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC-------
Confidence 888544 678999999999999988863 589999999986 4556664 35789999999987641
Q ss_pred cccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHH
Q 042869 481 GERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHI 560 (707)
Q Consensus 481 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 560 (707)
++ ..+++|+.|++++|....+|.. +++|+.|.+..+..... +.
T Consensus 176 ------l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l----------------------~~--- 218 (622)
T 3g06_A 176 ------LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL----------------------PA--- 218 (622)
T ss_dssp ------CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC----------------------CC---
T ss_pred ------Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccccc----------------------CC---
Confidence 11 3468899999999998888764 36788887765432211 10
Q ss_pred HHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccch
Q 042869 561 MQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPL 640 (707)
Q Consensus 561 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~ 640 (707)
.+++|+.|+++++ .++.++ ..+++|+.|+++++ .++.++ . .+++|+.|++.+| +++.+|.
T Consensus 219 -~~~~L~~L~Ls~N-~L~~lp---------~~l~~L~~L~Ls~N-~L~~lp---~---~~~~L~~L~Ls~N-~L~~lp~- 278 (622)
T 3g06_A 219 -LPSGLKELIVSGN-RLTSLP---------VLPSELKELMVSGN-RLTSLP---M---LPSGLLSLSVYRN-QLTRLPE- 278 (622)
T ss_dssp -CCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSS-CCSCCC---C---CCTTCCEEECCSS-CCCSCCG-
T ss_pred -CCCCCCEEEccCC-ccCcCC---------CCCCcCcEEECCCC-CCCcCC---c---ccccCcEEeCCCC-CCCcCCH-
Confidence 2478899999876 455443 24789999999986 677763 2 5789999999995 8888854
Q ss_pred hhhccCCCCcEEEEccCcchhhhh
Q 042869 641 VIGRGLQQLQSVKVSSCQNMEVIF 664 (707)
Q Consensus 641 ~~~~~l~~L~~L~i~~C~~l~~i~ 664 (707)
.+..+++|+.|++++|+--...+
T Consensus 279 -~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 279 -SLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -GGGGSCTTCEEECCSCCCCHHHH
T ss_pred -HHhhccccCEEEecCCCCCCcCH
Confidence 35789999999999987544443
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=7.1e-19 Score=180.10 Aligned_cols=289 Identities=13% Similarity=0.185 Sum_probs=214.4
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEec
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLE 397 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 397 (707)
...++.+.+.++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 346788888888887777543 37899999999999999888889999999999999999885 8889999999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCc--ccchhhhhCCCCCcEEEccCCCccc
Q 042869 398 NCKLGD-MAIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLK--VIPAYVISSLSRLEELYIGESPIEW 473 (707)
Q Consensus 398 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l~~~~~~~ 473 (707)
+|.++. +..+. ++|++|++++|.+..++. .+.++++|++|++++|.... ..+. .+.++++|+.|++++|.+..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCcccc
Confidence 999887 44443 799999999999887765 57899999999999865532 3343 37889999999999987642
Q ss_pred ccccccccccccccHHHhhcCCCCcEEEEeeccCCCC-CCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcc
Q 042869 474 GKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKAL-PRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGAN 552 (707)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~ 552 (707)
.. ..+ .++|++|++++|....+ |..+..+++|+.|.++.+.....
T Consensus 186 l~-------------~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------- 231 (330)
T 1xku_A 186 IP-------------QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV------------------- 231 (330)
T ss_dssp CC-------------SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-------------------
T ss_pred CC-------------ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-------------------
Confidence 11 111 26899999999887765 55678889999999876543221
Q ss_pred eecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCcccccccccccccc----ccCCCcCEEEe
Q 042869 553 ICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTA----ESFCKLKTIEV 628 (707)
Q Consensus 553 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~L~~L~i 628 (707)
+......+++|+.|+++++. ++.++.. ...+++|+.|+++++ .++.++...+.. ..++.|+.|++
T Consensus 232 ---~~~~~~~l~~L~~L~L~~N~-l~~lp~~------l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 232 ---DNGSLANTPHLRELHLNNNK-LVKVPGG------LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ---CTTTGGGSTTCCEEECCSSC-CSSCCTT------TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ---ChhhccCCCCCCEEECCCCc-CccCChh------hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 11123357899999998864 5555443 335899999999985 577664333321 13578999999
Q ss_pred ccCCCcc-cccchhhhccCCCCcEEEEccC
Q 042869 629 ERCDKLK-KVFPLVIGRGLQQLQSVKVSSC 657 (707)
Q Consensus 629 ~~C~~L~-~l~~~~~~~~l~~L~~L~i~~C 657 (707)
.+.+-.. .+++ ....++++|+.++++++
T Consensus 301 ~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 301 FSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred ecCcccccccCc-cccccccceeEEEeccc
Confidence 9865332 2434 34577899999999875
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.5e-19 Score=184.26 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=36.8
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGS 421 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~ 421 (707)
+++.|+++++.+..+|+. +.++++|++|++++|.+..+|..++.+++|++|++++|.++. |..++++++|++|++++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 344444444444444433 223445555555555444445445555555555555554444 334445555555555543
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=186.32 Aligned_cols=276 Identities=20% Similarity=0.225 Sum_probs=203.5
Q ss_pred CCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCCCCC--cccccCCCCCcE
Q 042869 339 FECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEI 415 (707)
Q Consensus 339 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~ 415 (707)
..|+.....+++++....+|..+ .++|++|++++|.+..+|. .++.+++|++|++++|.++. +..++++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34555666788888888998765 3589999999999999765 79999999999999999887 356999999999
Q ss_pred EEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccch-hhhhCCCCCcEEEccCCC-cccccccccccccccccHHHhh
Q 042869 416 LTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPA-YVISSLSRLEELYIGESP-IEWGKVGGVDGERRNASLDELN 492 (707)
Q Consensus 416 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~ 492 (707)
|++++|.+..+|.. ++++++|++|++++| .+..+|. ..+.++++|+.|++++|. +. ......+.
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~~~~ 171 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT------------KIQRKDFA 171 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC------------EECTTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc------------ccCHHHcc
Confidence 99999999998876 889999999999996 4566776 457899999999999884 32 22334678
Q ss_pred cCCCCcEEEEeeccCCCC-CCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEee
Q 042869 493 NLSKLTSLEILIQDEKAL-PRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTL 571 (707)
Q Consensus 493 ~l~~L~~L~l~~~~~~~~-p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l 571 (707)
.+++|++|++++|..... |..+..+++|+.|.++.+.. ...+......+++|+.|++
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----------------------~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH----------------------ILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS----------------------TTHHHHHHHHTTTEEEEEE
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc----------------------ccchhhhhhhcccccEEEC
Confidence 899999999999987665 67788889999999875432 1223334456889999999
Q ss_pred cCCCCcchhhhhcccCcccccccccceeeccCcc----ccccccccccccccCCCcCEEEeccCCCcccccchhhhccCC
Q 042869 572 DGLPDIKNILCELGREARTTAFSLLESLFLRDLR----NLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQ 647 (707)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~ 647 (707)
+++. ++....... ......+.++.+.+.++. .+..+ +.....+++|++|++++| +++.++. ..+..++
T Consensus 230 ~~n~-l~~~~~~~l--~~~~~~~~l~~l~L~~~~l~~~~l~~l---~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~ 301 (353)
T 2z80_A 230 RDTD-LDTFHFSEL--STGETNSLIKKFTFRNVKITDESLFQV---MKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLT 301 (353)
T ss_dssp ESCB-CTTCCCC--------CCCCCCEEEEESCBCCHHHHHHH---HHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCc-ccccccccc--ccccccchhhccccccccccCcchhhh---HHHHhcccCCCEEECCCC-CCCccCH-HHHhcCC
Confidence 8864 333221100 012234556666666542 11122 223456889999999985 7888855 3346789
Q ss_pred CCcEEEEccCcch
Q 042869 648 QLQSVKVSSCQNM 660 (707)
Q Consensus 648 ~L~~L~i~~C~~l 660 (707)
+|++|++++++-.
T Consensus 302 ~L~~L~L~~N~~~ 314 (353)
T 2z80_A 302 SLQKIWLHTNPWD 314 (353)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEeeCCCcc
Confidence 9999999987643
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.1e-18 Score=186.79 Aligned_cols=240 Identities=21% Similarity=0.245 Sum_probs=171.6
Q ss_pred ceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCC
Q 042869 322 CTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 322 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 400 (707)
...+...+..+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..+..+++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 345666666666666433 36888888888888888777788888899999988888875 4678888889999998888
Q ss_pred CCC-c-ccccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 401 LGD-M-AIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 401 ~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
++. + ..+..+++|++|++++|.+..+|. .+.++++|+.|++++|..++.++...+.++++|+.|++++|.+..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 210 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---- 210 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----
Confidence 877 2 447788889999998888887765 577888888998888888888887668888888888888887641
Q ss_pred ccccccccccHHHhhcCCCCcEEEEeeccCCCC-CCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecc
Q 042869 478 GVDGERRNASLDELNNLSKLTSLEILIQDEKAL-PRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLN 556 (707)
Q Consensus 478 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 556 (707)
...+..+++|+.|++++|....+ |..+..+++|+.|.++.+......
T Consensus 211 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------- 258 (452)
T 3zyi_A 211 ----------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE---------------------- 258 (452)
T ss_dssp ----------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC----------------------
T ss_pred ----------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC----------------------
Confidence 12366778888888888877665 445677778888877544322211
Q ss_pred hhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCc
Q 042869 557 EGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDL 604 (707)
Q Consensus 557 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 604 (707)
+..+..+++|+.|+++++ .++.++.. .+..+++|+.|+++++
T Consensus 259 ~~~~~~l~~L~~L~L~~N-~l~~~~~~-----~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHN-NLSSLPHD-----LFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTT-----SSTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCC-cCCccChH-----HhccccCCCEEEccCC
Confidence 111234567777777665 34444332 2334667777777654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=185.18 Aligned_cols=240 Identities=21% Similarity=0.286 Sum_probs=181.0
Q ss_pred ceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCC
Q 042869 322 CTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 322 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 400 (707)
.+.+...+..+..+|... .++++.|++++|.+..++...|.++++|++|++++|.+..++ ..+..+++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 346677777777766543 378899999999998888888899999999999999988854 678889999999999999
Q ss_pred CCCc--ccccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 401 LGDM--AIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 401 ~~~~--~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
++.. ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..++.++...+.++++|+.|++++|.+..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 199 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---- 199 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS----
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc----
Confidence 8873 458889999999999998887775 578899999999999888888887668889999999999987641
Q ss_pred ccccccccccHHHhhcCCCCcEEEEeeccCCCC-CCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecc
Q 042869 478 GVDGERRNASLDELNNLSKLTSLEILIQDEKAL-PRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLN 556 (707)
Q Consensus 478 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 556 (707)
...+..+++|+.|++++|....+ |..+..+++|+.|.+..+......
T Consensus 200 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------- 247 (440)
T 3zyj_A 200 ----------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE---------------------- 247 (440)
T ss_dssp ----------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC----------------------
T ss_pred ----------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC----------------------
Confidence 12367788999999998887665 556778888888888654432211
Q ss_pred hhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCc
Q 042869 557 EGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDL 604 (707)
Q Consensus 557 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 604 (707)
...+..+++|+.|+|+++ .++.++.. .+..+++|+.|+++++
T Consensus 248 ~~~~~~l~~L~~L~L~~N-~l~~~~~~-----~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHN-NLTLLPHD-----LFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSSTTCTTCCEEECTTS-CCCCCCTT-----TTSSCTTCCEEECCSS
T ss_pred hhhhcCCCCCCEEECCCC-CCCccChh-----HhccccCCCEEEcCCC
Confidence 112234677777877775 34444332 2334677777777754
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=9.3e-19 Score=177.19 Aligned_cols=189 Identities=22% Similarity=0.227 Sum_probs=129.1
Q ss_pred EEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC---CccccccCCCCEEEecCCC
Q 042869 324 AISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL---PSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 324 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~ 400 (707)
.+...++.+..+|... .++|+.|++++|.+..+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4666666666666532 36788888888888888877778888888888888877654 5666677888888888888
Q ss_pred CCC-cccccCCCCCcEEEcCCCchhhchH--HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 401 LGD-MAIIGDLKKLEILTLRGSNMQKLVE--EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 401 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
+.. +..+..+++|++|++++|.+..++. .+..+++|++|++++|......+. .+..+++|++|++++|.+..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~---- 164 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQE---- 164 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGG----
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCcccc----
Confidence 766 4567778888888888887776653 577788888888887654433343 36777888888887776531
Q ss_pred ccccccccccHHHhhcCCCCcEEEEeeccCCCC-CCChhhcccceEEEE
Q 042869 478 GVDGERRNASLDELNNLSKLTSLEILIQDEKAL-PRDLSFFKMLQRYRI 525 (707)
Q Consensus 478 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~~~~L~~L~l 525 (707)
...+..+..+++|++|++++|....+ |..+..+++|+.|.+
T Consensus 165 -------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 165 -------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp -------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 12234456677777777777765544 334444444444444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=3e-18 Score=171.41 Aligned_cols=192 Identities=18% Similarity=0.238 Sum_probs=109.6
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCC-
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCK- 400 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~- 400 (707)
+.++..++.+..+|.. ..++|+.|+++++.+..+++..|..+++|++|++++|.+..+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3445555555544432 235666666666666666655566666666666666666553 5556666666666666665
Q ss_pred CCC--cccccCCCCCcEEEcCCCchhhc-hHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 401 LGD--MAIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 401 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
+.. +..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++++++|+.|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 166 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS----- 166 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc-----
Confidence 444 34556666666666666666554 3345566666666666643 34444433556666666666666543
Q ss_pred ccccccccccHHHhhcCCCCcEEEEeeccCCCC-CCChhhcccceEEEEEec
Q 042869 478 GVDGERRNASLDELNNLSKLTSLEILIQDEKAL-PRDLSFFKMLQRYRILIG 528 (707)
Q Consensus 478 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~l~~~~~L~~L~l~~~ 528 (707)
......+..+++|+.|++++|..... |..+..+++|+.|+++.+
T Consensus 167 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 167 -------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp -------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 11112355566666666666655443 445556666666666443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.9e-18 Score=171.62 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=158.7
Q ss_pred cccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCC-cccC-CccccccCCCC
Q 042869 317 DTLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMY-LLAL-PSSLGLLQNLQ 392 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~L~ 392 (707)
..+..+++|++.++.+..++. +..+++|+.|++++|.+..+++..|.++++|++|++++|. +..+ |..+..+++|+
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 346788999999988877553 5578899999999888888877778889999999999986 7776 67788899999
Q ss_pred EEEecCCCCCC--cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 393 TLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 393 ~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
+|++++|.++. +..+.++++|++|++++|.+..+|.. ++.+++|++|++++| .++.+|...+..+++|+.|++++|
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCC
Confidence 99999998877 45678899999999999988877754 778899999999885 456666655788899999999988
Q ss_pred CcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCC-hhhcccceEEEEEecc
Q 042869 470 PIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRD-LSFFKMLQRYRILIGY 529 (707)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-l~~~~~L~~L~l~~~~ 529 (707)
.+. ...+..+..+++|+.|++++|....+|.. +..+++|+.|.++.++
T Consensus 188 ~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 188 RVA------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCC------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccc------------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 764 23345677888999999999888777653 5667777777775544
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=3.8e-19 Score=180.74 Aligned_cols=262 Identities=13% Similarity=0.124 Sum_probs=140.9
Q ss_pred ceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcCCCch
Q 042869 345 RFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNM 423 (707)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l 423 (707)
+.++++.+.....+..++..+++|++|++++|.+..++ ..++.+++|++|++++|.++....++.+++|++|++++|.+
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcc
Confidence 33444444444445555556667777777777766644 45667777777777777766543466677777777777766
Q ss_pred hhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEe
Q 042869 424 QKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEIL 503 (707)
Q Consensus 424 ~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 503 (707)
..+| .+++|++|++++|. +..++. ..+++|+.|++++|.+. ......+..+++|+.|+++
T Consensus 93 ~~l~----~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 93 QELL----VGPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKIT------------MLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp EEEE----ECTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCC------------SGGGBCTGGGSSEEEEECT
T ss_pred cccc----CCCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCC------------CccchhhhccCCCCEEECC
Confidence 6554 23667777776643 333332 23566677777666653 1112234556666666666
Q ss_pred eccCCCCC-CCh-hhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhh
Q 042869 504 IQDEKALP-RDL-SFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNIL 581 (707)
Q Consensus 504 ~~~~~~~p-~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 581 (707)
+|.....+ ..+ ..+++|+.|.++.+....... . ..+++|+.|+++++. ++.++
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~--~~l~~L~~L~Ls~N~-l~~l~ 207 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----------------------Q--VVFAKLKTLDLSSNK-LAFMG 207 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----------------------C--CCCTTCCEEECCSSC-CCEEC
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccccc----------------------c--cccccCCEEECCCCc-CCcch
Confidence 66544432 222 234455555543332111100 0 014566666666643 33333
Q ss_pred hhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccCcchh
Q 042869 582 CELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSCQNME 661 (707)
Q Consensus 582 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 661 (707)
.. ...+++|+.|+++++ .++.+ +.....+++|+.|++.+++-.....+ .+...+++|+.|++.+|..+.
T Consensus 208 ~~------~~~l~~L~~L~L~~N-~l~~l---~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 208 PE------FQSAAGVTWISLRNN-KLVLI---EKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GG------GGGGTTCSEEECTTS-CCCEE---CTTCCCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHHHHHHHHH
T ss_pred hh------hcccCcccEEECcCC-cccch---hhHhhcCCCCCEEEccCCCccCcCHH-HHHhccccceEEECCCchhcc
Confidence 32 223667777777664 45555 23344566777777776433212212 234556666666666665554
Q ss_pred h
Q 042869 662 V 662 (707)
Q Consensus 662 ~ 662 (707)
.
T Consensus 277 ~ 277 (317)
T 3o53_A 277 G 277 (317)
T ss_dssp S
T ss_pred C
Confidence 4
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=1.9e-19 Score=193.78 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=66.1
Q ss_pred cceEEeccCCCCCCCC--C-CCCCCccceeeecccccccc----CchhhcCCCCccEEEecCCCccc-CCccc-cccC--
Q 042869 321 VCTAISLNNSNISEPP--Q-GFECPQLRFLCIGYHASLRI----PSNFFTGMTELRVLDFTQMYLLA-LPSSL-GLLQ-- 389 (707)
Q Consensus 321 ~~~~l~l~~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-lp~~i-~~l~-- 389 (707)
.+++|++.++.+...+ . +..+++|+.|++++|.+... .+..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3445555555443211 1 12445555555555544321 11234445555555555555433 11111 1222
Q ss_pred --CCCEEEecCCCCCC------cccccCCCCCcEEEcCCCchhhc-hHHhh-----cCcCCCEEcCCCCCCCcc----cc
Q 042869 390 --NLQTLSLENCKLGD------MAIIGDLKKLEILTLRGSNMQKL-VEEIG-----RLTQLRLLDLSNCSKLKV----IP 451 (707)
Q Consensus 390 --~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~~----~p 451 (707)
+|++|++++|.++. +..+..+++|++|++++|.+... +..+. ..++|++|++++|..... ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 45555555555542 33445555555555555554321 11111 133455555555432221 12
Q ss_pred hhhhhCCCCCcEEEccCCCc
Q 042869 452 AYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 452 ~~~~~~l~~L~~L~l~~~~~ 471 (707)
. .+..+++|++|++++|.+
T Consensus 164 ~-~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 164 S-VLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp H-HHHHCTTCCEEECCSSBC
T ss_pred H-HHhhCCCCCEEECcCCCc
Confidence 1 134455555555555543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=176.44 Aligned_cols=168 Identities=20% Similarity=0.295 Sum_probs=131.6
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
..+.++..+.....+|..+ .+++++|++++|.+..+ +..+..+++|++|+|++|.++. +..+.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567788888888888765 37899999999999885 4789999999999999999887 4678899999999999
Q ss_pred CCchhhchH-HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCc
Q 042869 420 GSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLT 498 (707)
Q Consensus 420 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 498 (707)
+|.++.+|. .+..+++|++|++++|. +..++...+.++++|+.|++++|.... ......+..+++|+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~-----------~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS-----------YISEGAFEGLSNLR 188 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC-----------EECTTTTTTCSSCC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc-----------eeCcchhhcccccC
Confidence 999998876 57889999999999854 566776568899999999998864321 11223577888999
Q ss_pred EEEEeeccCCCCCCChhhcccceEEEEE
Q 042869 499 SLEILIQDEKALPRDLSFFKMLQRYRIL 526 (707)
Q Consensus 499 ~L~l~~~~~~~~p~~l~~~~~L~~L~l~ 526 (707)
+|++++|....+|. +..+++|+.|+++
T Consensus 189 ~L~L~~n~l~~~~~-~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 189 YLNLAMCNLREIPN-LTPLIKLDELDLS 215 (440)
T ss_dssp EEECTTSCCSSCCC-CTTCSSCCEEECT
T ss_pred eecCCCCcCccccc-cCCCcccCEEECC
Confidence 99999888777763 4445555555543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2e-17 Score=176.96 Aligned_cols=168 Identities=20% Similarity=0.272 Sum_probs=132.3
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
..+.++..+.....+|..+ .++|++|++++|.+..+ |..++.+++|++|+|++|.++. +..+.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567777777788888654 36899999999999885 6789999999999999999887 4678899999999999
Q ss_pred CCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCc
Q 042869 420 GSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLT 498 (707)
Q Consensus 420 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 498 (707)
+|.+..+|.. +..+++|++|++++|. +..+|...+.++++|+.|++++|... .......+..+++|+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l-----------~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKL-----------EYISEGAFEGLFNLK 199 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTC-----------CEECTTTTTTCTTCC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCc-----------cccChhhccCCCCCC
Confidence 9999988765 7889999999999954 56777666899999999999886432 011223577888999
Q ss_pred EEEEeeccCCCCCCChhhcccceEEEEE
Q 042869 499 SLEILIQDEKALPRDLSFFKMLQRYRIL 526 (707)
Q Consensus 499 ~L~l~~~~~~~~p~~l~~~~~L~~L~l~ 526 (707)
.|++++|....+|. +..+++|+.|+++
T Consensus 200 ~L~L~~n~l~~~~~-~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 200 YLNLGMCNIKDMPN-LTPLVGLEELEMS 226 (452)
T ss_dssp EEECTTSCCSSCCC-CTTCTTCCEEECT
T ss_pred EEECCCCccccccc-ccccccccEEECc
Confidence 99999888777753 4455555555553
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=7.4e-19 Score=195.63 Aligned_cols=198 Identities=15% Similarity=0.026 Sum_probs=131.3
Q ss_pred cccceEEeccCCCCCCCCC------CCCCCccceeeecccccccc----CchhhcCCCCccEEEecCCCcccCCcccccc
Q 042869 319 LKVCTAISLNNSNISEPPQ------GFECPQLRFLCIGYHASLRI----PSNFFTGMTELRVLDFTQMYLLALPSSLGLL 388 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l 388 (707)
.+.+++|++.+|.+..... ...+++|+.|+++++....+ ...++.++++|++|+++++.+..+|..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 4577888888876543221 12568888888887776522 2234567888888888888888888888888
Q ss_pred CCCCEEEecCCCCC----C-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcE
Q 042869 389 QNLQTLSLENCKLG----D-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEE 463 (707)
Q Consensus 389 ~~L~~L~l~~~~~~----~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~ 463 (707)
++|+.|+++.+... . ...+..+++|+.|+++++....+|..+..+++|++|++++|.........++.++++|+.
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 88888888764422 1 356777888888888887666778777888899999998877322222234678888888
Q ss_pred EEccCCCcccccccccccccccccHHHhhcCCCCcEEEEee-----------ccCCC--CCCChhhcccceEEEEEec
Q 042869 464 LYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILI-----------QDEKA--LPRDLSFFKMLQRYRILIG 528 (707)
Q Consensus 464 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~--~p~~l~~~~~L~~L~l~~~ 528 (707)
|++..+ +. ..........+++|++|++.. +..+. ++.....+++|+.|.+.++
T Consensus 323 L~L~~~-~~-----------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 323 LETRNV-IG-----------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp EEEEGG-GH-----------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred EeccCc-cC-----------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 888732 21 122233346678888888883 22211 1112245778888887543
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=8.9e-18 Score=169.96 Aligned_cols=167 Identities=22% Similarity=0.177 Sum_probs=128.6
Q ss_pred cceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEEecCCCCCC----cccccCCCCCcEEEc
Q 042869 344 LRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLSLENCKLGD----MAIIGDLKKLEILTL 418 (707)
Q Consensus 344 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~----~~~i~~l~~L~~L~l 418 (707)
.+.+++.++....+|..+ .++|++|+++++.+..+|.. ++.+++|++|++++|.++. +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 356778888888888754 36899999999999998876 6899999999999999875 356677899999999
Q ss_pred CCCchhhchHHhhcCcCCCEEcCCCCCCCcccch-hhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCC
Q 042869 419 RGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPA-YVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKL 497 (707)
Q Consensus 419 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 497 (707)
++|.+..+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.+. ......+..+++|
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L 152 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR------------VAFNGIFNGLSSL 152 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE------------ECSTTTTTTCTTC
T ss_pred CCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC------------ccchhhcccCcCC
Confidence 999998888888899999999999854 444443 34788999999999988764 2233456778888
Q ss_pred cEEEEeeccCCC--CCCChhhcccceEEEEE
Q 042869 498 TSLEILIQDEKA--LPRDLSFFKMLQRYRIL 526 (707)
Q Consensus 498 ~~L~l~~~~~~~--~p~~l~~~~~L~~L~l~ 526 (707)
++|++++|.... .|..+..+++|+.|+++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 888888877543 55555555555555553
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=4e-17 Score=164.78 Aligned_cols=192 Identities=17% Similarity=0.210 Sum_probs=169.1
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEec
Q 042869 318 TLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 397 (707)
....++.|++.++.+..++.+..+++|+.|++++|.+..+++ +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 467899999999999888888899999999999999998887 899999999999999998886 68999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 398 NCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 398 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
+|.++..+.+..+++|++|++++|.+..++. ++.+++|++|++++| .+..++. +..+++|+.|++++|.+..
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~---- 187 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD---- 187 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc----
Confidence 9999997779999999999999999988876 889999999999996 4566665 7899999999999998641
Q ss_pred ccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEeccee
Q 042869 478 GVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWW 531 (707)
Q Consensus 478 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~ 531 (707)
...+..+++|++|++++|....++. +..+++|+.|.++.+...
T Consensus 188 ----------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 ----------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ----------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred ----------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 1227889999999999999888874 788999999999887653
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=2.9e-17 Score=164.07 Aligned_cols=197 Identities=18% Similarity=0.215 Sum_probs=168.6
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEec
Q 042869 318 TLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 397 (707)
....++.+++.++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..++.. +.+++|++|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 3456788999999888877544 37899999999999998888899999999999999999987765 789999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccc
Q 042869 398 NCKLGD-MAIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGK 475 (707)
Q Consensus 398 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 475 (707)
+|.++. +..+..+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|...+..+++|+.|++++|.+.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 161 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT--- 161 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS---
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC---
Confidence 999988 667889999999999999999887 45889999999999995 566777766889999999999999875
Q ss_pred ccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecc
Q 042869 476 VGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGY 529 (707)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~ 529 (707)
......+..+++|+.|++++|....+|..+....+|+.+.+..++
T Consensus 162 ---------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 162 ---------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ---------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 222234678899999999999999999998888899999886554
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.7e-16 Score=172.48 Aligned_cols=240 Identities=20% Similarity=0.149 Sum_probs=192.7
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
...++.|++.+|.+..+|. .+++|++|++++|.+..+|. .+++|++|++++|.+..+|. .+.+|++|++++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 3789999999999998887 67999999999999998886 68999999999999999987 678999999999
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
|.++..+. .+++|++|++++|.+..+|. .+.+|+.|++++| .+..+| ..+++|+.|++++|.+..
T Consensus 131 N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~----- 195 (622)
T 3g06_A 131 NQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS----- 195 (622)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-----
T ss_pred CCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-----
Confidence 99888433 35899999999999998875 4678999999985 556677 357999999999998741
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchh
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEG 558 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 558 (707)
++ ..+++|+.|++++|....+|.. +++|+.|.++.+..... +
T Consensus 196 --------l~---~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~l----------------------p-- 237 (622)
T 3g06_A 196 --------LP---TLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSL----------------------P-- 237 (622)
T ss_dssp --------CC---CCCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC----------------------C--
T ss_pred --------CC---CccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcC----------------------C--
Confidence 11 1247899999999999888864 47889998876543221 1
Q ss_pred HHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccc
Q 042869 559 HIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKV 637 (707)
Q Consensus 559 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 637 (707)
..+++|+.|+++++ .++.++. .+++|+.|++++| .++.+ |.....+++|+.|++.+++ +...
T Consensus 238 --~~l~~L~~L~Ls~N-~L~~lp~---------~~~~L~~L~Ls~N-~L~~l---p~~l~~l~~L~~L~L~~N~-l~~~ 299 (622)
T 3g06_A 238 --VLPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRN-QLTRL---PESLIHLSSETTVNLEGNP-LSER 299 (622)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCCSC---CGGGGGSCTTCEEECCSCC-CCHH
T ss_pred --CCCCcCcEEECCCC-CCCcCCc---------ccccCcEEeCCCC-CCCcC---CHHHhhccccCEEEecCCC-CCCc
Confidence 13578999999886 4555542 3789999999986 67777 4456789999999999964 5544
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=2.7e-18 Score=174.44 Aligned_cols=268 Identities=15% Similarity=0.118 Sum_probs=153.8
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcC
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLR 419 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 419 (707)
.+++|+.|++++|.+..+++..+.++++|++|++++|.+...++ ++.+++|++|++++|.++..+ ..++|++|+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECC
Confidence 34567777777776666666666677777777777776666544 666777777777777655422 33667777777
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHh-hcCCCCc
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDEL-NNLSKLT 498 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~ 498 (707)
+|.+..++. ..+++|++|++++|.. ..++...++.+++|+.|++++|.+. ...+..+ ..+++|+
T Consensus 108 ~n~l~~~~~--~~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 108 NNNISRVSC--SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEID------------TVNFAELAASSDTLE 172 (317)
T ss_dssp SSCCSEEEE--CCCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCC------------EEEGGGGGGGTTTCC
T ss_pred CCccCCcCc--cccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCC------------cccHHHHhhccCcCC
Confidence 776665553 2356677777776433 3343323566677777777766653 1112222 3566777
Q ss_pred EEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcc
Q 042869 499 SLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIK 578 (707)
Q Consensus 499 ~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 578 (707)
+|++++|....+|... .+++|+.|+++.+.... .+.. ...+++|+.|+++++ .++
T Consensus 173 ~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~----------------------l~~~-~~~l~~L~~L~L~~N-~l~ 227 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF----------------------MGPE-FQSAAGVTWISLRNN-KLV 227 (317)
T ss_dssp EEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE----------------------ECGG-GGGGTTCSEEECTTS-CCC
T ss_pred EEECCCCcCccccccc-ccccCCEEECCCCcCCc----------------------chhh-hcccCcccEEECcCC-ccc
Confidence 7777776665554433 36667777665443211 1111 234677777777765 344
Q ss_pred hhhhhcccCcccccccccceeeccCcccc-ccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEccC
Q 042869 579 NILCELGREARTTAFSLLESLFLRDLRNL-EEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSSC 657 (707)
Q Consensus 579 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 657 (707)
.++.. ...+++|+.|++++++-. ..+ +.....+++|+.|++.+|+.++...+.. ...+.+....-..|
T Consensus 228 ~l~~~------~~~l~~L~~L~l~~N~~~~~~~---~~~~~~~~~L~~l~l~~~~~l~~~~~~~--~~~~~~~~~~~~cc 296 (317)
T 3o53_A 228 LIEKA------LRFSQNLEHFDLRGNGFHCGTL---RDFFSKNQRVQTVAKQTVKKLTGQNEEE--CTVPTLGHYGAYCC 296 (317)
T ss_dssp EECTT------CCCCTTCCEEECTTCCCBHHHH---HHHHHTCHHHHHHHHHHHHHHHSSSSCC--CSSTTCEEETTEEE
T ss_pred chhhH------hhcCCCCCEEEccCCCccCcCH---HHHHhccccceEEECCCchhccCCchhc--cCCCceecccceee
Confidence 44332 234677777777765322 122 2234456777777777777666654321 22344444444556
Q ss_pred cchhh
Q 042869 658 QNMEV 662 (707)
Q Consensus 658 ~~l~~ 662 (707)
..+..
T Consensus 297 ~~l~~ 301 (317)
T 3o53_A 297 EDLPA 301 (317)
T ss_dssp BCCTT
T ss_pred ccCCh
Confidence 66654
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=5.6e-17 Score=160.61 Aligned_cols=195 Identities=22% Similarity=0.332 Sum_probs=162.3
Q ss_pred cceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEEecCC
Q 042869 321 VCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLSLENC 399 (707)
Q Consensus 321 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 399 (707)
..+.+++.++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4677888888888777543 26899999999999999888899999999999999999998766 478999999999999
Q ss_pred CCCC--cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccc
Q 042869 400 KLGD--MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKV 476 (707)
Q Consensus 400 ~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 476 (707)
.++. +..+..+++|++|++++|.+..+|.. +..+++|++|++++| .+..+|...++.+++|+.|++++|.+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~---- 170 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK---- 170 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS----
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc----
Confidence 9887 34578899999999999999877654 688999999999995 566777666889999999999999764
Q ss_pred cccccccccccHHHhhcCCCCcEEEEeeccCCCCCCC-hhhcccceEEEEEecc
Q 042869 477 GGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRD-LSFFKMLQRYRILIGY 529 (707)
Q Consensus 477 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-l~~~~~L~~L~l~~~~ 529 (707)
......+..+++|+.|++++|....+|.. +..+++|+.|.+..++
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 22234577889999999999998888775 5778899999987654
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=3.3e-18 Score=190.44 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=99.2
Q ss_pred ccceEEeccCCCCCC--CCCCCC-CCc-cceeeeccccccc--cCchhhcCCCCccEEEecCCCcccC-----Ccccccc
Q 042869 320 KVCTAISLNNSNISE--PPQGFE-CPQ-LRFLCIGYHASLR--IPSNFFTGMTELRVLDFTQMYLLAL-----PSSLGLL 388 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~--~~~~~~-~~~-L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~l-----p~~i~~l 388 (707)
..++.|++.++.+.. +..... +++ |+.|++.++.... ....+..++++|++|++++|.+... +.....+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 455666666554322 111111 223 6666665543110 1112233566666666666654332 1223455
Q ss_pred CCCCEEEecCCCCCC------cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCC---cccchhhhhCCC
Q 042869 389 QNLQTLSLENCKLGD------MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKL---KVIPAYVISSLS 459 (707)
Q Consensus 389 ~~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~~~~~l~ 459 (707)
++|++|++++|.++. +..+.++++|++|++++|.+..+|..+.++++|++|+++.+... ...+.. +..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhccc
Confidence 666666666666541 12334566666666666666666666666666666666542221 111111 44556
Q ss_pred CCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCC--CCCChhhcccceEEEEE
Q 042869 460 RLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKA--LPRDLSFFKMLQRYRIL 526 (707)
Q Consensus 460 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~p~~l~~~~~L~~L~l~ 526 (707)
+|+.|++..+.. ...+..+..+++|++|+++++.... ++..+..+++|+.|.+.
T Consensus 271 ~L~~L~l~~~~~-------------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 271 KLCRLGLSYMGP-------------NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TCCEEEETTCCT-------------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccCccccch-------------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 666666554321 2334455667788888888766321 11223567788888876
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=1e-18 Score=188.15 Aligned_cols=203 Identities=19% Similarity=0.192 Sum_probs=132.4
Q ss_pred cccceEEeccCCCCCC-----CCC-CCCCCccceeeecccccccc-CchhhcCCC----CccEEEecCCCccc-----CC
Q 042869 319 LKVCTAISLNNSNISE-----PPQ-GFECPQLRFLCIGYHASLRI-PSNFFTGMT----ELRVLDFTQMYLLA-----LP 382 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~----~L~~L~l~~~~~~~-----lp 382 (707)
.+.++.|++.+|.+.. ++. ...+++|++|++++|.+... +..++..++ +|++|++++|.+.. +|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 4567888888887653 122 23568888898888876653 334445555 68899998888773 57
Q ss_pred ccccccCCCCEEEecCCCCCC--cccc-----cCCCCCcEEEcCCCchhh-----chHHhhcCcCCCEEcCCCCCCCccc
Q 042869 383 SSLGLLQNLQTLSLENCKLGD--MAII-----GDLKKLEILTLRGSNMQK-----LVEEIGRLTQLRLLDLSNCSKLKVI 450 (707)
Q Consensus 383 ~~i~~l~~L~~L~l~~~~~~~--~~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~ 450 (707)
..+..+++|++|++++|.++. +..+ ...++|++|++++|.+.. ++..+..+++|++|++++|......
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 778888889999998888765 2222 235678888888887653 5666777888888888886532222
Q ss_pred chhhh----hCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCC-----CCCh-hhcccc
Q 042869 451 PAYVI----SSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKAL-----PRDL-SFFKML 520 (707)
Q Consensus 451 p~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----p~~l-~~~~~L 520 (707)
+..+. ..+++|++|++++|.+.. .........+..+++|++|++++|..... ...+ ..+++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~--------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTS--------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBT--------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcH--------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 22211 135688888888887641 11123455677788888888887764321 1111 236677
Q ss_pred eEEEEEecc
Q 042869 521 QRYRILIGY 529 (707)
Q Consensus 521 ~~L~l~~~~ 529 (707)
+.|.++.+.
T Consensus 259 ~~L~L~~n~ 267 (461)
T 1z7x_W 259 RTLWIWECG 267 (461)
T ss_dssp CEEECTTSC
T ss_pred eEEECcCCC
Confidence 888776553
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=5.1e-18 Score=182.54 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=90.4
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcC
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLR 419 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 419 (707)
.+++|+.|++++|.+..+++..|..+++|++|++++|.+...++ ++.+++|++|+|++|.++..+ ..++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence 34466777777666666666566667777777777776665443 666677777777776655422 22666777777
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhh-cCCCCc
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELN-NLSKLT 498 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~ 498 (707)
+|.+..+|. ..+++|+.|++++|...+..|.. ++.+++|+.|++++|.+. ...+..+. .+++|+
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~------------~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEID------------TVNFAELAASSDTLE 172 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCC------------EEEGGGGGGGTTTCC
T ss_pred CCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCC------------CcChHHHhhhCCccc
Confidence 766665553 24566777777665443333332 566666777777666553 22223333 456666
Q ss_pred EEEEeeccCCCC
Q 042869 499 SLEILIQDEKAL 510 (707)
Q Consensus 499 ~L~l~~~~~~~~ 510 (707)
.|++++|....+
T Consensus 173 ~L~Ls~N~l~~~ 184 (487)
T 3oja_A 173 HLNLQYNFIYDV 184 (487)
T ss_dssp EEECTTSCCCEE
T ss_pred EEecCCCccccc
Confidence 666666655444
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=4.9e-18 Score=189.10 Aligned_cols=350 Identities=16% Similarity=0.094 Sum_probs=198.6
Q ss_pred cccceEEeccCCCCCC--CCCCC-CCCccceeeecccc-ccc-cCchhhcCCCCccEEEecCCCccc-----CCcccccc
Q 042869 319 LKVCTAISLNNSNISE--PPQGF-ECPQLRFLCIGYHA-SLR-IPSNFFTGMTELRVLDFTQMYLLA-----LPSSLGLL 388 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l 388 (707)
...+++|++.++.+.. +..+. .+++|+.|++.++. ... ....++.++++|++|++++|.+.. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 3467777777776533 11222 46788888888763 322 123445578888888888887554 22233466
Q ss_pred CCCCEEEecCCC--CCC--c-ccccCCCCCcEEEcCCC-chhhchHHhhcCcCCCEEcCCCCCC----------------
Q 042869 389 QNLQTLSLENCK--LGD--M-AIIGDLKKLEILTLRGS-NMQKLVEEIGRLTQLRLLDLSNCSK---------------- 446 (707)
Q Consensus 389 ~~L~~L~l~~~~--~~~--~-~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~---------------- 446 (707)
++|++|++++|. +.. . ..+.++++|++|++++| .+..+|..+.++++|++|++..+..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 788888888886 221 1 22345788888888887 5666777777788888887554321
Q ss_pred ---Cc-----------ccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCC-CC
Q 042869 447 ---LK-----------VIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKA-LP 511 (707)
Q Consensus 447 ---~~-----------~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p 511 (707)
+. .++. ++..+++|++|++++|.+. .......+..+++|++|++.++.... ++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~-----------~~~l~~~~~~~~~L~~L~l~~~~~~~~l~ 331 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQ-----------SYDLVKLLCQCPKLQRLWVLDYIEDAGLE 331 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCC-----------HHHHHHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred CCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCC-----------HHHHHHHHhcCCCcCEEeCcCccCHHHHH
Confidence 11 1222 1345678888888877642 11122335678888888888762211 11
Q ss_pred CChhhcccceEEEEEecc--------eeccCC---C-CCccceEEeeecCCcce-ecchhHHHHhcccceEeec-----C
Q 042869 512 RDLSFFKMLQRYRILIGY--------WWSVGP---S-DGISRMFRLKLTNGANI-CLNEGHIMQLKGIEDLTLD-----G 573 (707)
Q Consensus 512 ~~l~~~~~L~~L~l~~~~--------~~~~~~---~-~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~-----~ 573 (707)
.....+++|+.|++..+. ...... . ....++..|....+... .....+...+++|+.|++. +
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 122457888888885421 000000 0 00122333322111111 1112223357889999888 5
Q ss_pred CCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEE
Q 042869 574 LPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVK 653 (707)
Q Consensus 574 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 653 (707)
|..++..+.+..-......+++|+.|++++ .+..... ..-...+++|+.|++.+|. ++..........+++|++|+
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~-~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF-EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH-HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH-HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEE
Confidence 666663321100000133478888888866 3332210 0111237889999998874 54443333346689999999
Q ss_pred EccCcchhhhhcccccccccCCCCCcceeecccceeeccCccc
Q 042869 654 VSSCQNMEVIFAAERGDESSNNNGTEVIEVTQLRTLELRSLAQ 696 (707)
Q Consensus 654 i~~C~~l~~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~cp~ 696 (707)
+++|+. .+..... ....+++|++|++++|+.
T Consensus 488 L~~n~~-~~~~~~~-----------~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 488 IRDCPF-GDKALLA-----------NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCSC-CHHHHHH-----------TGGGGGGSSEEEEESSCC
T ss_pred CcCCCC-cHHHHHH-----------HHHhCCCCCEEeeeCCCC
Confidence 999975 3222111 112579999999999975
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=6e-18 Score=188.45 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=99.3
Q ss_pred CCCccceeeeccccccccCchhh-cCCCCccEEEecCC-Cccc--CCccccccCCCCEEEecCCCCCC--ccc----ccC
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFF-TGMTELRVLDFTQM-YLLA--LPSSLGLLQNLQTLSLENCKLGD--MAI----IGD 409 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~-~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~----i~~ 409 (707)
.+++|+.|+++++.+.......+ ..+++|++|++++| .+.. ++..+..+++|++|++++|.+++ +.. ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 57899999999887664333333 36899999999998 4544 55556689999999999998665 222 336
Q ss_pred CCCCcEEEcCCCc--h--hhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCC
Q 042869 410 LKKLEILTLRGSN--M--QKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESP 470 (707)
Q Consensus 410 l~~L~~L~l~~~~--l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 470 (707)
+++|++|++++|. + ..++.-+.++++|++|++++|..++.+|.. +.++++|++|+++.+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYT 246 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccccccc
Confidence 7899999999986 2 234444567899999999998777776654 7889999999987664
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.8e-16 Score=157.64 Aligned_cols=198 Identities=21% Similarity=0.238 Sum_probs=151.5
Q ss_pred ccccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L 394 (707)
.+..+++|++.+|.+..++ .+..+++|+.|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 3467888999988887654 4557889999999988888888877888999999999999888854 678889999999
Q ss_pred EecCCCCCCc--ccccCCCCCcEEEcCCCchhh--chHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCc----EEEc
Q 042869 395 SLENCKLGDM--AIIGDLKKLEILTLRGSNMQK--LVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLE----ELYI 466 (707)
Q Consensus 395 ~l~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~----~L~l 466 (707)
++++|.+... ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+++|+ .|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence 9999988773 358888999999999988875 67888889999999998864 4444433355566665 8888
Q ss_pred cCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCCh-hhcccceEEEEEecc
Q 042869 467 GESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDL-SFFKMLQRYRILIGY 529 (707)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l-~~~~~L~~L~l~~~~ 529 (707)
++|.+... ........+|+.|++++|....+|..+ ..+++|+.|.++.++
T Consensus 185 s~n~l~~~-------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 185 SLNPMNFI-------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEE-------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCccccc-------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 88876421 112223347889999988888887764 778888888886554
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.8e-16 Score=157.67 Aligned_cols=193 Identities=20% Similarity=0.255 Sum_probs=142.5
Q ss_pred EeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC
Q 042869 325 ISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD 403 (707)
Q Consensus 325 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~ 403 (707)
+...+..+..+|... .++|+.|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.++.
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344444555555432 267999999999999988878899999999999999998865 478999999999999999887
Q ss_pred --cccccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCc-ccchhhhhCCCCCcEEEccCCCccccccccc
Q 042869 404 --MAIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLK-VIPAYVISSLSRLEELYIGESPIEWGKVGGV 479 (707)
Q Consensus 404 --~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 479 (707)
+..+.++++|++|++++|.+..++. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~---- 165 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY---- 165 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC----
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC----
Confidence 3678899999999999998887765 58889999999999865443 25665 788999999999998764111
Q ss_pred ccccccccHHHhhcCCCCc-EEEEeeccCCCCCCChhhcccceEEEEEec
Q 042869 480 DGERRNASLDELNNLSKLT-SLEILIQDEKALPRDLSFFKMLQRYRILIG 528 (707)
Q Consensus 480 ~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~ 528 (707)
......+..++.|. +|++++|....++.......+|+.|+++.+
T Consensus 166 -----~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 166 -----CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp -----GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred -----HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 11222333344443 788888877766655544445666665443
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.2e-16 Score=153.62 Aligned_cols=178 Identities=25% Similarity=0.345 Sum_probs=152.9
Q ss_pred ccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 394 (707)
.+..++.|++.++.+..++. +..+++|+.|++++|.+..++...|.++++|++|++++|.+..+|. .+..+++|++|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 45689999999999988764 5689999999999999999999989999999999999999999775 46899999999
Q ss_pred EecCCCCCC--cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc
Q 042869 395 SLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 395 ~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
++++|.++. +..++.+++|++|++++|.+..+|.. +..+++|++|++++| .+..++...+.++++|+.|++++|.+
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence 999999888 35578999999999999999988865 688999999999995 45666665588999999999999987
Q ss_pred ccccccccccccccccHHHhhcCCCCcEEEEeeccCC
Q 042869 472 EWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK 508 (707)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 508 (707)
. ......+..+++|+.|++++|+..
T Consensus 194 ~------------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 194 K------------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp S------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C------------cCCHHHhccccCCCEEEecCCCee
Confidence 5 222235678899999999998753
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1e-16 Score=161.70 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=168.0
Q ss_pred EeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCc
Q 042869 325 ISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDM 404 (707)
Q Consensus 325 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 404 (707)
..+..+.+........+++|+.|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.+
T Consensus 24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC
T ss_pred HHhCCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc
Confidence 34444444444445578999999999999888873 7889999999999999999887 99999999999999999998
Q ss_pred ccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccc
Q 042869 405 AIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERR 484 (707)
Q Consensus 405 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 484 (707)
+.++.+++|++|++++|.+..+|. +..+++|++|++++| .+..++. ++.+++|+.|++++|.+.
T Consensus 101 ~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~------------ 164 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS------------ 164 (308)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC------------
T ss_pred hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCC------------
Confidence 889999999999999999998875 899999999999996 4566665 789999999999999764
Q ss_pred cccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhc
Q 042869 485 NASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLK 564 (707)
Q Consensus 485 ~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~ 564 (707)
.. ..+..+++|+.|++++|....++. +..+++|+.|.++.+...... ....++
T Consensus 165 -~~-~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~------------------------~l~~l~ 217 (308)
T 1h6u_A 165 -DL-TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS------------------------PLANTS 217 (308)
T ss_dssp -CC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG------------------------GGTTCT
T ss_pred -CC-hhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc------------------------cccCCC
Confidence 11 227889999999999999888775 778899999998665432211 123578
Q ss_pred ccceEeecCCC
Q 042869 565 GIEDLTLDGLP 575 (707)
Q Consensus 565 ~L~~L~l~~~~ 575 (707)
+|+.|++.+++
T Consensus 218 ~L~~L~l~~N~ 228 (308)
T 1h6u_A 218 NLFIVTLTNQT 228 (308)
T ss_dssp TCCEEEEEEEE
T ss_pred CCCEEEccCCe
Confidence 99999998754
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.3e-16 Score=155.02 Aligned_cols=193 Identities=15% Similarity=0.225 Sum_probs=146.1
Q ss_pred ccccceEEeccCCCCCCCCC--CCCCCccceeeecccc-ccccCchhhcCCCCccEEEecC-CCcccCC-ccccccCCCC
Q 042869 318 TLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHA-SLRIPSNFFTGMTELRVLDFTQ-MYLLALP-SSLGLLQNLQ 392 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~ 392 (707)
....++.|++.++.+..++. +..+++|+.|++++|. +..+++..|.++++|++|++++ |.+..+| ..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 45578888888888877554 4578888888888886 7788877788888888888887 8888765 4678888888
Q ss_pred EEEecCCCCCCcccccCCCCCc---EEEcCCC-chhhchHH-hhcCcCCC-EEcCCCCCCCcccchhhhhCCCCCcEEEc
Q 042869 393 TLSLENCKLGDMAIIGDLKKLE---ILTLRGS-NMQKLVEE-IGRLTQLR-LLDLSNCSKLKVIPAYVISSLSRLEELYI 466 (707)
Q Consensus 393 ~L~l~~~~~~~~~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 466 (707)
+|++++|.++..+.++.+++|+ +|++++| .+..+|.. +..+++|+ +|++++|. +..+|...+.. ++|+.|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEEc
Confidence 8888888887755577777777 8888888 88877754 77888888 88888754 45777654444 78888888
Q ss_pred cCCC-cccccccccccccccccHHHhhcC-CCCcEEEEeeccCCCCCCChhhcccceEEEEE
Q 042869 467 GESP-IEWGKVGGVDGERRNASLDELNNL-SKLTSLEILIQDEKALPRDLSFFKMLQRYRIL 526 (707)
Q Consensus 467 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~ 526 (707)
++|. +. ......+..+ ++|+.|++++|....+|.. .+++|+.|.+.
T Consensus 187 ~~n~~l~------------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 187 NKNKYLT------------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp TTCTTCC------------EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred CCCCCcc------------cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence 8884 53 1222346677 8888888888888877765 57777777763
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=4.3e-17 Score=175.29 Aligned_cols=235 Identities=14% Similarity=0.081 Sum_probs=179.7
Q ss_pred ccccceEEeccCCCCCCCC--CCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEE
Q 042869 318 TLKVCTAISLNNSNISEPP--QGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLS 395 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 395 (707)
.+..++.|++.+|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++|.+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 3458999999999998765 45689999999999999887766 8899999999999999988764 38999999
Q ss_pred ecCCCCCCcccccCCCCCcEEEcCCCchhhc-hHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccc
Q 042869 396 LENCKLGDMAIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWG 474 (707)
Q Consensus 396 l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 474 (707)
+++|.++..+. ..+++|++|++++|.+..+ |..++++++|++|++++|...+..|....+.+++|+.|++++|.+...
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99999988432 3578999999999999876 457889999999999997766666665445899999999999987511
Q ss_pred cccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCccee
Q 042869 475 KVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANIC 554 (707)
Q Consensus 475 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 554 (707)
.....+++|+.|++++|....+|..+..+++|+.|+++.+.....++
T Consensus 185 --------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------------------- 231 (487)
T 3oja_A 185 --------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK------------------- 231 (487)
T ss_dssp --------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT-------------------
T ss_pred --------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch-------------------
Confidence 22335889999999999999888888888999999987654332111
Q ss_pred cchhHHHHhcccceEeecCCCCc-chhhhhcccCcccccccccceeecc
Q 042869 555 LNEGHIMQLKGIEDLTLDGLPDI-KNILCELGREARTTAFSLLESLFLR 602 (707)
Q Consensus 555 ~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~ 602 (707)
. ...+++|+.|++.+++-. ..++.. ...+++|+.+.+.
T Consensus 232 ---~-l~~l~~L~~L~l~~N~l~c~~~~~~------~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ---A-LRFSQNLEHFDLRGNGFHCGTLRDF------FSKNQRVQTVAKQ 270 (487)
T ss_dssp ---T-CCCCTTCCEEECTTCCBCHHHHHHH------HTTCHHHHHHHHH
T ss_pred ---h-hccCCCCCEEEcCCCCCcCcchHHH------HHhCCCCcEEecc
Confidence 1 123577888888776533 122221 2235666666654
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=9.4e-16 Score=151.88 Aligned_cols=176 Identities=26% Similarity=0.336 Sum_probs=132.7
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEEe
Q 042869 318 TLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLSL 396 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 396 (707)
....++.+.+.++.+..++.+..+++|+.|++++|.+..++ .+..+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 45677888888888887777778888888888888777764 367888888888888888886544 678888888888
Q ss_pred cCCCCCCc--ccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccc
Q 042869 397 ENCKLGDM--AIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEW 473 (707)
Q Consensus 397 ~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 473 (707)
++|.++.. ..++.+++|++|++++|.+..+|.. ++.+++|++|++++|. +..++...++.+++|+.|++.+|.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~- 194 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK- 194 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC-
Confidence 88887772 3467888888888888888877654 4778888888888854 45566555678888888888888764
Q ss_pred ccccccccccccccHHHhhcCCCCcEEEEeeccCC
Q 042869 474 GKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK 508 (707)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 508 (707)
......+..+++|+.|++++|...
T Consensus 195 -----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 -----------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 222334677788888888877643
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1e-15 Score=153.02 Aligned_cols=171 Identities=26% Similarity=0.337 Sum_probs=117.0
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
...++.+++.++.+..++.+..+++|+.|++++|.+..+++ +.++++|++|++++|.+..+|. ++.+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 45677777777777776666677777777777777776665 6677777777777777766544 67777777777777
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
|.++..+.+..+++|++|++++|.+..+ ..+..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~------ 191 (291)
T 1h6t_A 122 NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS------ 191 (291)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC------
T ss_pred CcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC------
Confidence 7777766677777777777777777666 356677777777777753 444444 567777777777777653
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccCCCC
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDEKAL 510 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 510 (707)
. ...+..+++|+.|++++|.....
T Consensus 192 -------~-l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 -------D-LRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -------B-CGGGTTCTTCSEEEEEEEEEECC
T ss_pred -------C-ChhhccCCCCCEEECcCCcccCC
Confidence 0 12366677777777777665443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=2.2e-16 Score=156.47 Aligned_cols=194 Identities=19% Similarity=0.272 Sum_probs=159.6
Q ss_pred ccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCC
Q 042869 320 KVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENC 399 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 399 (707)
..+..+.+..+.+........+++|+.|++.++.+..++. +..+++|++|++++|.+..++ .++.+++|++|++++|
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence 3444556666666666566688999999999998887764 788999999999999998865 7899999999999999
Q ss_pred CCCCc--ccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccc
Q 042869 400 KLGDM--AIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKV 476 (707)
Q Consensus 400 ~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 476 (707)
.++.. ..++++++|++|++++|.+..+|.. ++.+++|++|++++| .+..+|...++++++|+.|++++|.+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 170 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ---- 170 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC----
Confidence 99883 4478999999999999999988765 689999999999996 556777665789999999999999874
Q ss_pred cccccccccccHHHhhcCCCCcEEEEeeccCCCCCCC-hhhcccceEEEEEecc
Q 042869 477 GGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRD-LSFFKMLQRYRILIGY 529 (707)
Q Consensus 477 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-l~~~~~L~~L~l~~~~ 529 (707)
......++.+++|+.|++++|....++.. +..+++|+.|.+..+.
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 171 --------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 22234467899999999999998887765 5789999999987654
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=6.7e-16 Score=154.12 Aligned_cols=177 Identities=20% Similarity=0.260 Sum_probs=152.2
Q ss_pred CCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCCcccccCCCCCcEEE
Q 042869 339 FECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILT 417 (707)
Q Consensus 339 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~ 417 (707)
..+++++.+++.++.+..+|..+ .+.+++|++++|.+..+ |..+..+++|++|++++|.++..+..+.+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 46788999999999999999765 37899999999999885 577999999999999999999866668999999999
Q ss_pred cCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCC
Q 042869 418 LRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKL 497 (707)
Q Consensus 418 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 497 (707)
+++|.+..+|..+..+++|++|++++| .++.+|...+.++++|+.|++++|.+. ......+..+++|
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L 150 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK------------TLPPGLLTPTPKL 150 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC------------CCCTTTTTTCTTC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC------------ccChhhcccccCC
Confidence 999999999998999999999999995 556676555899999999999999875 2223456789999
Q ss_pred cEEEEeeccCCCCCCCh-hhcccceEEEEEeccee
Q 042869 498 TSLEILIQDEKALPRDL-SFFKMLQRYRILIGYWW 531 (707)
Q Consensus 498 ~~L~l~~~~~~~~p~~l-~~~~~L~~L~l~~~~~~ 531 (707)
+.|++++|....+|... ..+++|+.|.++.+...
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 99999999999998765 67899999999766543
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=4.9e-16 Score=155.27 Aligned_cols=190 Identities=21% Similarity=0.252 Sum_probs=160.2
Q ss_pred cceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCC
Q 042869 321 VCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 321 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 400 (707)
.+..+.+....+........+++|+.|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 344445555666555555678999999999999888864 7889999999999999999887 9999999999999999
Q ss_pred CCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccc
Q 042869 401 LGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVD 480 (707)
Q Consensus 401 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 480 (707)
++.++.++.+++|++|++++|.+..++ .+..+++|++|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 102 l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~-------- 169 (291)
T 1h6t_A 102 VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------- 169 (291)
T ss_dssp CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC--------
T ss_pred CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc--------
Confidence 999888999999999999999998875 68899999999999964 455543 889999999999999864
Q ss_pred cccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceec
Q 042869 481 GERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWS 532 (707)
Q Consensus 481 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~ 532 (707)
. .. .+..+++|+.|++++|....+|. +..+++|+.|.++.+....
T Consensus 170 ----~-~~-~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 ----D-IV-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----C-CG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ----c-ch-hhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 1 11 28889999999999999888875 7889999999998876543
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=2.2e-16 Score=153.29 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=150.7
Q ss_pred CCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCC-cccCCc-cccccCCCCEEEecC-CCCCC--ccc
Q 042869 332 ISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMY-LLALPS-SLGLLQNLQTLSLEN-CKLGD--MAI 406 (707)
Q Consensus 332 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~--~~~ 406 (707)
+..+|. -.++|+.|++++|.+..+++..|.++++|++|++++|. +..+|. .+..+++|++|++++ |.++. +..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 556666 34589999999999999999889999999999999997 888765 789999999999999 88887 356
Q ss_pred ccCCCCCcEEEcCCCchhhchHHhhcCcCCC---EEcCCCCCCCcccchhhhhCCCCCc-EEEccCCCcccccccccccc
Q 042869 407 IGDLKKLEILTLRGSNMQKLVEEIGRLTQLR---LLDLSNCSKLKVIPAYVISSLSRLE-ELYIGESPIEWGKVGGVDGE 482 (707)
Q Consensus 407 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~p~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~ 482 (707)
+..+++|++|++++|.+..+|. ++.+++|+ +|++++|..++.+|...+.++++|+ .|++++|.+....
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~------- 172 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ------- 172 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-------
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-------
Confidence 8899999999999999999987 88889998 9999997578888876689999999 9999999874211
Q ss_pred cccccHHHhhcCCCCcEEEEeecc-CCCCCC-Chhhc-ccceEEEEEecc
Q 042869 483 RRNASLDELNNLSKLTSLEILIQD-EKALPR-DLSFF-KMLQRYRILIGY 529 (707)
Q Consensus 483 ~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~-~l~~~-~~L~~L~l~~~~ 529 (707)
...+.. ++|++|++++|. ...+|. .+..+ ++|+.|+++.+.
T Consensus 173 -----~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 173 -----GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp -----TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred -----HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 112333 789999999994 777765 45777 899999886544
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.9e-15 Score=147.81 Aligned_cols=177 Identities=22% Similarity=0.352 Sum_probs=137.8
Q ss_pred ccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecC
Q 042869 320 KVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLEN 398 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 398 (707)
...+++++.++.+..+|.... ++++.|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 345678888888877775443 68899999998888888877888999999999999888854 4578889999999999
Q ss_pred CCCCC--cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccc
Q 042869 399 CKLGD--MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGK 475 (707)
Q Consensus 399 ~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 475 (707)
|.++. +..+..+++|++|++++|.+..+|.. +..+++|++|++++| .+..+|...++.+++|+.|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 98877 34677889999999999988887765 478889999999885 556666655788888999998888764
Q ss_pred ccccccccccccHHHhhcCCCCcEEEEeeccCCCC
Q 042869 476 VGGVDGERRNASLDELNNLSKLTSLEILIQDEKAL 510 (707)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 510 (707)
......+..+++|+.|++++|....-
T Consensus 169 ---------~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 ---------SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 22224567778888888888775443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.7e-16 Score=161.45 Aligned_cols=225 Identities=18% Similarity=0.173 Sum_probs=148.8
Q ss_pred ccceeeeccccccccCchhhcCC--CCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC---cccccCCCCCcEEE
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGM--TELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD---MAIIGDLKKLEILT 417 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~ 417 (707)
.++.|+++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.++. +..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4677888876544 3445666 78899999988888876667788888888888888764 35677888888888
Q ss_pred cCCCchh-hchHHhhcCcCCCEEcCCCCCCCcc--cchhhhhCCCCCcEEEccCC-CcccccccccccccccccHHHhhc
Q 042869 418 LRGSNMQ-KLVEEIGRLTQLRLLDLSNCSKLKV--IPAYVISSLSRLEELYIGES-PIEWGKVGGVDGERRNASLDELNN 493 (707)
Q Consensus 418 l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 493 (707)
+++|.+. ..|..++.+++|++|++++|..++. ++. .+.++++|++|++++| .+. .......+..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~-----------~~~~~~~~~~ 192 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFT-----------EKHVQVAVAH 192 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCC-----------HHHHHHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcC-----------hHHHHHHHHh
Confidence 8888776 5667788888888888888755553 443 3677888888888887 542 1123445667
Q ss_pred CC-CCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeec
Q 042869 494 LS-KLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLD 572 (707)
Q Consensus 494 l~-~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~ 572 (707)
++ +|++|++++|... + .. ...+.....+++|+.|+++
T Consensus 193 l~~~L~~L~l~~~~~~-~----------------------------------------~~-~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 193 VSETITQLNLSGYRKN-L----------------------------------------QK-SDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp SCTTCCEEECCSCGGG-S----------------------------------------CH-HHHHHHHHHCTTCSEEECT
T ss_pred cccCCCEEEeCCCccc-C----------------------------------------CH-HHHHHHHhhCCCCCEEeCC
Confidence 77 7777777765310 0 00 0001133457788888887
Q ss_pred CCCCcchhhhhcccCcccccccccceeeccCccccccccccccccccCCCcCEEEeccC
Q 042869 573 GLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERC 631 (707)
Q Consensus 573 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C 631 (707)
+|..++..... ....+++|+.|++++|..+.... ......+++|+.|++.+|
T Consensus 231 ~~~~l~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 231 DSVMLKNDCFQ-----EFFQLNYLQHLSLSRCYDIIPET--LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGG-----GGGGCTTCCEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTS
T ss_pred CCCcCCHHHHH-----HHhCCCCCCEeeCCCCCCCCHHH--HHHHhcCCCCCEEeccCc
Confidence 77654432221 23346888888888876333211 113455788888888887
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.4e-15 Score=153.87 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=124.1
Q ss_pred CCCccceeeecccccc-ccCchhh-cCCCCccEEEecCCCcccCCcccccc-----CCCCEEEecCCCCCC--cccccCC
Q 042869 340 ECPQLRFLCIGYHASL-RIPSNFF-TGMTELRVLDFTQMYLLALPSSLGLL-----QNLQTLSLENCKLGD--MAIIGDL 410 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~--~~~i~~l 410 (707)
.+++|+.|++++|.+. .+|..++ ..+++|++|++++|.+...|..++.+ ++|++|++++|.+.. +..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3677888888877776 4555443 77888888888888887777777776 788888888888776 3577788
Q ss_pred CCCcEEEcCCCchhh---chHHh--hcCcCCCEEcCCCCCCCc--ccchhhhhCCCCCcEEEccCCCccccccccccccc
Q 042869 411 KKLEILTLRGSNMQK---LVEEI--GRLTQLRLLDLSNCSKLK--VIPAYVISSLSRLEELYIGESPIEWGKVGGVDGER 483 (707)
Q Consensus 411 ~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 483 (707)
++|++|++++|++.. +|..+ +.+++|++|++++|.... .++...+.++++|+.|++++|.+....
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 244 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-------- 244 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc--------
Confidence 888888888887543 34455 778888888888754321 333344567788888888888764111
Q ss_pred ccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecce
Q 042869 484 RNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYW 530 (707)
Q Consensus 484 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~ 530 (707)
....+..+++|+.|++++|....+|..+. ++|+.|+++.+..
T Consensus 245 ---~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 245 ---GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp ---CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC
T ss_pred ---chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC
Confidence 01234456788888888888777877765 7778777765543
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.3e-16 Score=161.98 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=137.6
Q ss_pred cceEEeccCCCCCCCCCCCCC--CccceeeeccccccccCchhhcCCCCccEEEecCCCccc--CCccccccCCCCEEEe
Q 042869 321 VCTAISLNNSNISEPPQGFEC--PQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA--LPSSLGLLQNLQTLSL 396 (707)
Q Consensus 321 ~~~~l~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l 396 (707)
..+++++.++.+.. .....+ ++++.|++.++.+...++. +..+++|++|++++|.+.. +|..++.+++|++|++
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 35678887776541 112234 7899999999988877666 4579999999999998865 7888999999999999
Q ss_pred cCCCCCC--cccccCCCCCcEEEcCCC-chh--hchHHhhcCcCCCEEcCCCCCCCcc--cchhhhhCCC-CCcEEEccC
Q 042869 397 ENCKLGD--MAIIGDLKKLEILTLRGS-NMQ--KLVEEIGRLTQLRLLDLSNCSKLKV--IPAYVISSLS-RLEELYIGE 468 (707)
Q Consensus 397 ~~~~~~~--~~~i~~l~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~~~~~l~-~L~~L~l~~ 468 (707)
++|.++. +..++++++|++|++++| .++ .++..+.++++|++|++++|..++. ++. .+..++ +|++|++++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSG 204 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCS
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCC
Confidence 9999875 677889999999999999 676 4788889999999999999845554 444 478899 999999999
Q ss_pred CCcccccccccccccccccHHHhhcCCCCcEEEEeecc
Q 042869 469 SPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQD 506 (707)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 506 (707)
|.... .....+..+..+++|++|++++|.
T Consensus 205 ~~~~~---------~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 205 YRKNL---------QKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CGGGS---------CHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CcccC---------CHHHHHHHHhhCCCCCEEeCCCCC
Confidence 85210 113345567789999999998876
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=9.5e-16 Score=155.20 Aligned_cols=194 Identities=19% Similarity=0.199 Sum_probs=156.6
Q ss_pred cccceEEeccCCCCCC-CCC-C--CCCCccceeeeccccccccCchhhcCC-----CCccEEEecCCCcccCC-cccccc
Q 042869 319 LKVCTAISLNNSNISE-PPQ-G--FECPQLRFLCIGYHASLRIPSNFFTGM-----TELRVLDFTQMYLLALP-SSLGLL 388 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~-~~~-~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~~l 388 (707)
...+++|++.+|.+.. .|. . ..+++|+.|++++|.+...| ..+..+ ++|++|++++|.+..++ ..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5689999999999863 444 3 68999999999999998885 446665 99999999999999966 789999
Q ss_pred CCCCEEEecCCCCCC----cccc--cCCCCCcEEEcCCCchhhc---hHH-hhcCcCCCEEcCCCCCCCcccchhhhhCC
Q 042869 389 QNLQTLSLENCKLGD----MAII--GDLKKLEILTLRGSNMQKL---VEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSL 458 (707)
Q Consensus 389 ~~L~~L~l~~~~~~~----~~~i--~~l~~L~~L~l~~~~l~~l---p~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l 458 (707)
++|++|++++|.+.. +..+ +.+++|++|++++|.+..+ +.. +.++++|++|++++|...+..|...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999999764 3344 8999999999999998844 333 35789999999999766555543336678
Q ss_pred CCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecc
Q 042869 459 SRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGY 529 (707)
Q Consensus 459 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~ 529 (707)
++|+.|++++|.+. .++..+. ++|+.|++++|....+|. +..+++|+.|.++.+.
T Consensus 253 ~~L~~L~Ls~N~l~-------------~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-------------QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSCCS-------------SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCCccC-------------hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 99999999999875 1222233 789999999999998877 7889999999886544
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=3.8e-15 Score=163.24 Aligned_cols=174 Identities=27% Similarity=0.342 Sum_probs=145.1
Q ss_pred ccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEec
Q 042869 318 TLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 397 (707)
.+..++.|.+.++.+..++.+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+..+| .++.+++|+.|+|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 456788889999988888888889999999999998888876 788999999999999988876 68889999999999
Q ss_pred CCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCccccccc
Q 042869 398 NCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVG 477 (707)
Q Consensus 398 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 477 (707)
+|.+..++.+..+++|+.|+|++|.+..+ ..+..+++|+.|++++|.. ..++. +..+++|+.|++++|.+.
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l-~~~~~--l~~l~~L~~L~Ls~N~i~----- 188 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP--LAGLTKLQNLYLSKNHIS----- 188 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC-CCchh--hccCCCCCEEECcCCCCC-----
Confidence 99998888889999999999999988877 4688899999999998654 44544 788999999999998764
Q ss_pred ccccccccccHHHhhcCCCCcEEEEeeccCCCCCC
Q 042869 478 GVDGERRNASLDELNNLSKLTSLEILIQDEKALPR 512 (707)
Q Consensus 478 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~ 512 (707)
. +..+..+++|+.|++++|.....|.
T Consensus 189 -------~--l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 -------D--LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -------B--CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -------C--ChHHccCCCCCEEEccCCcCcCCcc
Confidence 1 2457888999999999887655443
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=2.6e-15 Score=164.57 Aligned_cols=192 Identities=21% Similarity=0.251 Sum_probs=162.5
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
+..+..+.+..+.+..+.....+++|+.|+++++.+..++. +..+++|+.|+|++|.+..+|. +..+++|+.|+|++
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 33455556666666666666688999999999999988874 7899999999999999999877 99999999999999
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
|.+..++.++.+++|++|+|++|.+..++ .+..+++|+.|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~------ 166 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------ 166 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC------
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC------
Confidence 99999889999999999999999998875 58999999999999965 455543 889999999999999864
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceec
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWS 532 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~ 532 (707)
. ... +..+++|+.|++++|....+| .+..+++|+.|.++.+....
T Consensus 167 ------~-~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 ------D-IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ------C-CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred ------C-chh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 1 112 888999999999999988875 57889999999998776544
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=1.1e-14 Score=136.49 Aligned_cols=149 Identities=16% Similarity=0.262 Sum_probs=103.2
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEE
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILT 417 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~ 417 (707)
.+++|+.|+++++.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45667777777776666662 567777777777777655543 56777777777777777765 66777777788888
Q ss_pred cCCCchhh-chHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCC
Q 042869 418 LRGSNMQK-LVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSK 496 (707)
Q Consensus 418 l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 496 (707)
+++|.+.. .|..++.+++|++|++++|..++.+|. +..+++|+.|++++|.+. . ...+..+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~------------~--~~~l~~l~~ 182 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH------------D--YRGIEDFPK 182 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC------------C--CTTGGGCSS
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc------------C--hHHhccCCC
Confidence 87777764 566677778888888877665666663 677777888887777653 1 114666777
Q ss_pred CcEEEEeeccC
Q 042869 497 LTSLEILIQDE 507 (707)
Q Consensus 497 L~~L~l~~~~~ 507 (707)
|+.|++++|..
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 77777777664
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.6e-14 Score=148.69 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=58.9
Q ss_pred EeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCc-cccccCCCCE-EEecCCCC
Q 042869 325 ISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPS-SLGLLQNLQT-LSLENCKL 401 (707)
Q Consensus 325 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~-~i~~l~~L~~-L~l~~~~~ 401 (707)
+...++++..+|... .++++.|++++|.+..+|++.|.++++|++|++++|.+.+ +|. .|..+.+|+. +.+..|++
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 344444444444322 2455555555555555555555555555555555555433 332 3444554443 33334444
Q ss_pred CC--cccccCCCCCcEEEcCCCchhhchH-HhhcCcCCCEEcCCCCCCCcccc
Q 042869 402 GD--MAIIGDLKKLEILTLRGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIP 451 (707)
Q Consensus 402 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p 451 (707)
+. +..+..+++|++|++++|.+..+|. ......++..|++.++..+..++
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 44 2344555555555555555544432 12233344444444444444444
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=7.7e-15 Score=138.98 Aligned_cols=174 Identities=22% Similarity=0.352 Sum_probs=139.6
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEEecCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLSLENCKL 401 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 401 (707)
+.+...++.+..+|... .++|+.|++++|.+..+++..|..+++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34566666666665433 46899999999999999988889999999999999999997764 68899999999999998
Q ss_pred CCc--ccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 402 GDM--AIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 402 ~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
+.. ..++.+++|++|++++|.+..+|.. +.++++|++|++++| .+..++...+.++++|+.|++.+|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee------
Confidence 873 3478999999999999999888765 688999999999995 456677666788999999999998753
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccC-CCCCCChhhc
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDE-KALPRDLSFF 517 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~p~~l~~~ 517 (707)
+.+++|+.|.++.+.. ..+|.+++.+
T Consensus 162 -------------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -------------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 3467788888777654 3567666444
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=9.6e-15 Score=150.33 Aligned_cols=237 Identities=15% Similarity=0.119 Sum_probs=158.0
Q ss_pred cEEEecCCCcccCCccccccCCCCEEEecCCCCCCc--ccccCCCCCcEEEcCCCchh-hchH-HhhcCcCCCEEcCCCC
Q 042869 369 RVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDM--AIIGDLKKLEILTLRGSNMQ-KLVE-EIGRLTQLRLLDLSNC 444 (707)
Q Consensus 369 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~--~~i~~l~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~ 444 (707)
++++.+++.++.+|..+ ..++++|+|++|+++.. ..+.++++|++|+|++|++. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56788888888888876 36888999999888873 35788888888888888764 4554 3567778777655555
Q ss_pred CCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEee-ccCCCCCCC-hhhc-ccce
Q 042869 445 SKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILI-QDEKALPRD-LSFF-KMLQ 521 (707)
Q Consensus 445 ~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~p~~-l~~~-~~L~ 521 (707)
+.+..++...+..+++|+.|++++|.+.... ...+....++..|++.. +....+|.. +..+ ..++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~------------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLP------------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCC------------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred CcccccCchhhhhccccccccccccccccCC------------chhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 6677776655778888888888877664111 11222344566666654 334444432 2222 3455
Q ss_pred EEEEEecceeccCCCCCccceEEeeecCCcceecchhHHHHhcccceEeecCCCCcchhhhhcccCcccccccccceeec
Q 042869 522 RYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFL 601 (707)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 601 (707)
.|.++.+... ..+...+ ...+|+.|.+.++..++.++.+ .+..+++|+.|++
T Consensus 158 ~L~L~~N~i~----------------------~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~-----~f~~l~~L~~LdL 209 (350)
T 4ay9_X 158 ILWLNKNGIQ----------------------EIHNSAF-NGTQLDELNLSDNNNLEELPND-----VFHGASGPVILDI 209 (350)
T ss_dssp EEECCSSCCC----------------------EECTTSS-TTEEEEEEECTTCTTCCCCCTT-----TTTTEECCSEEEC
T ss_pred hhcccccccc----------------------CCChhhc-cccchhHHhhccCCcccCCCHH-----HhccCcccchhhc
Confidence 5555443322 1111111 2457888888887888877654 2345889999999
Q ss_pred cCccccccccccccccccCCCcCEEEeccCCCcccccchhhhccCCCCcEEEEcc
Q 042869 602 RDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRGLQQLQSVKVSS 656 (707)
Q Consensus 602 ~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 656 (707)
+++ .++.++ ...|.+|++|.+.+|+.++.+|+. ..|++|+.+++.+
T Consensus 210 s~N-~l~~lp-----~~~~~~L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SRT-RIHSLP-----SYGLENLKKLRARSTYNLKKLPTL---EKLVALMEASLTY 255 (350)
T ss_dssp TTS-CCCCCC-----SSSCTTCCEEECTTCTTCCCCCCT---TTCCSCCEEECSC
T ss_pred CCC-CcCccC-----hhhhccchHhhhccCCCcCcCCCc---hhCcChhhCcCCC
Confidence 885 677763 345888999999999999988753 6788999998864
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1.2e-14 Score=141.99 Aligned_cols=172 Identities=22% Similarity=0.295 Sum_probs=145.5
Q ss_pred CccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEc
Q 042869 342 PQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTL 418 (707)
Q Consensus 342 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l 418 (707)
.+.+.++++++....+|..+ .+.|+.|++++|.+..++ ..++.+++|++|++++|.++. +..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46788999999999998764 368999999999999964 569999999999999999988 355899999999999
Q ss_pred CCCchhhchH-HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCC
Q 042869 419 RGSNMQKLVE-EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKL 497 (707)
Q Consensus 419 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 497 (707)
++|.+..+|. .+..+++|++|++++| .+..+|...+..+++|+.|++++|.+. ......++.+++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L 157 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ------------SIPAGAFDKLTNL 157 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC------------ccCHHHcCcCcCC
Confidence 9999998875 4689999999999995 566777766789999999999999875 2223457889999
Q ss_pred cEEEEeeccCCCCCC-ChhhcccceEEEEEecc
Q 042869 498 TSLEILIQDEKALPR-DLSFFKMLQRYRILIGY 529 (707)
Q Consensus 498 ~~L~l~~~~~~~~p~-~l~~~~~L~~L~l~~~~ 529 (707)
+.|++++|....+|. .+..+++|+.|.+..+.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 999999999888876 56788999999987654
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=6.6e-15 Score=144.57 Aligned_cols=171 Identities=20% Similarity=0.212 Sum_probs=120.0
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
...+..+.+..+.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.+..+|. ++.+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 4455566666776666665567778888888877777766 26777888888888888777766 77788888888888
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGG 478 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 478 (707)
|.++..+.+.. ++|++|++++|.+..++ .+..+++|+.|++++|. ++.++. ++.+++|+.|++++|.+..
T Consensus 95 N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~----- 164 (263)
T 1xeu_A 95 NRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN----- 164 (263)
T ss_dssp SCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB-----
T ss_pred CccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc-----
Confidence 88777544444 77888888888777765 47777888888887743 455553 6777888888887776541
Q ss_pred cccccccccHHHhhcCCCCcEEEEeeccCCCCC
Q 042869 479 VDGERRNASLDELNNLSKLTSLEILIQDEKALP 511 (707)
Q Consensus 479 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p 511 (707)
. ..+..+++|+.|++++|.....|
T Consensus 165 --------~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 --------T-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp --------C-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred --------h-HHhccCCCCCEEeCCCCcccCCc
Confidence 1 44666777777777777654443
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.1e-15 Score=159.89 Aligned_cols=262 Identities=12% Similarity=0.077 Sum_probs=122.0
Q ss_pred hcCCCCccEEEecCCCccc-----CCccccccCCCCEEEecCCCCCC-----ccc-------ccCCCCCcEEEcCCCchh
Q 042869 362 FTGMTELRVLDFTQMYLLA-----LPSSLGLLQNLQTLSLENCKLGD-----MAI-------IGDLKKLEILTLRGSNMQ 424 (707)
Q Consensus 362 ~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~-----~~~-------i~~l~~L~~L~l~~~~l~ 424 (707)
+..+++|++|++++|.+.. ++..+..+++|++|+|++|.+.. |.. +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3445555555555554433 22234455555555555543321 111 245555555555555444
Q ss_pred h-----chHHhhcCcCCCEEcCCCCCCCcccchh---hhhCC---------CCCcEEEccCCCccccccccccccccccc
Q 042869 425 K-----LVEEIGRLTQLRLLDLSNCSKLKVIPAY---VISSL---------SRLEELYIGESPIEWGKVGGVDGERRNAS 487 (707)
Q Consensus 425 ~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~---~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 487 (707)
. +|..+.++++|++|++++|......+.. .+..+ ++|++|++++|.+.. ......
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--------~~~~~l 179 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------GSMKEW 179 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------GGHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------HHHHHH
Confidence 3 4555555555555555554332111111 02222 555666665555420 000111
Q ss_pred HHHhhcCCCCcEEEEeeccCC------CCCCChhhcccceEEEEEecceeccCCCCCccceEEeeecCCcceecchhHHH
Q 042869 488 LDELNNLSKLTSLEILIQDEK------ALPRDLSFFKMLQRYRILIGYWWSVGPSDGISRMFRLKLTNGANICLNEGHIM 561 (707)
Q Consensus 488 ~~~l~~l~~L~~L~l~~~~~~------~~p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 561 (707)
...+..+++|++|++++|... -.|..+..+++|+.|.++.+.... ......+....
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~------------------~g~~~l~~~l~ 241 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH------------------LGSSALAIALK 241 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH------------------HHHHHHHHHGG
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc------------------HHHHHHHHHHc
Confidence 134455556666666555443 122244455555555554332100 00000111223
Q ss_pred HhcccceEeecCCCCcchhhhh-cccCccc--ccccccceeeccCcccccc-----cccccccc-ccCCCcCEEEeccCC
Q 042869 562 QLKGIEDLTLDGLPDIKNILCE-LGREART--TAFSLLESLFLRDLRNLEE-----ICRGPLTA-ESFCKLKTIEVERCD 632 (707)
Q Consensus 562 ~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~~~~-~~~~~L~~L~i~~C~ 632 (707)
.+++|+.|+++++. ++..... +.. .+ ..+++|+.|++++|. +.. ++ ... ..+++|+.|++.+|
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~---~~l~~~l~~L~~L~l~~N- 313 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVVD--AFSKLENIGLQTLRLQYNE-IELDAVRTLK---TVIDEKMPDLLFLELNGN- 313 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHH--HHHTCSSCCCCEEECCSSC-CBHHHHHHHH---HHHHHHCTTCCEEECTTS-
T ss_pred cCCCcCEEECCCCC-CchhhHHHHHH--HHhhccCCCeEEEECcCCc-CCHHHHHHHH---HHHHhcCCCceEEEccCC-
Confidence 46777777777765 3332111 000 11 236788888888763 443 32 222 34788888888885
Q ss_pred Ccccccc--hhhhccCCCCcEEEEccC
Q 042869 633 KLKKVFP--LVIGRGLQQLQSVKVSSC 657 (707)
Q Consensus 633 ~L~~l~~--~~~~~~l~~L~~L~i~~C 657 (707)
.++...+ ......+++++.+++..-
T Consensus 314 ~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 314 RFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 4554432 233344666665555443
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=5.4e-14 Score=135.05 Aligned_cols=149 Identities=25% Similarity=0.340 Sum_probs=126.9
Q ss_pred ceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEEecCCC
Q 042869 322 CTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLSLENCK 400 (707)
Q Consensus 322 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 400 (707)
.+.++..++.+..+|... .++|+.|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456778888887777543 38999999999999998888889999999999999999888754 6889999999999999
Q ss_pred CCCc--ccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 401 LGDM--AIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 401 ~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
++.. ..+..+++|++|++++|.+..+|..+..+++|++|++++| .+..+|...+..+++|+.|++.+|++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8883 3468899999999999999999999999999999999985 566777666888999999999998764
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.2e-14 Score=134.36 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=130.6
Q ss_pred cccccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCccc-CCccccccCCCCEEE
Q 042869 317 DTLKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLA-LPSSLGLLQNLQTLS 395 (707)
Q Consensus 317 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~ 395 (707)
..+..++.+++.++.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345678999999999998888889999999999999776664 47899999999999999987 788899999999999
Q ss_pred ecCCCCCC--cccccCCCCCcEEEcCCCc-hhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc
Q 042869 396 LENCKLGD--MAIIGDLKKLEILTLRGSN-MQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 396 l~~~~~~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
+++|.++. +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|+.|++.+|.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCccc
Confidence 99999987 7889999999999999997 88887 68999999999999964 566663 78999999999999875
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=9.2e-15 Score=147.83 Aligned_cols=193 Identities=17% Similarity=0.070 Sum_probs=137.3
Q ss_pred ccceEEeccCCCCCC-CC-CC--CCCCccceeeeccccccccCc----hhhcCCCCccEEEecCCCcccCC-ccccccCC
Q 042869 320 KVCTAISLNNSNISE-PP-QG--FECPQLRFLCIGYHASLRIPS----NFFTGMTELRVLDFTQMYLLALP-SSLGLLQN 390 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~-~~-~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 390 (707)
..++.|++.+|.+.. .+ .. ..+++|+.|++++|.+....+ ..+..+++|++|++++|.+..++ ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 347888888887754 22 23 568888888888887765322 22346888899999888887754 67888888
Q ss_pred CCEEEecCCCCCC------cccccCCCCCcEEEcCCCchhhchHH----hhcCcCCCEEcCCCCCCCcccchhhhhCC--
Q 042869 391 LQTLSLENCKLGD------MAIIGDLKKLEILTLRGSNMQKLVEE----IGRLTQLRLLDLSNCSKLKVIPAYVISSL-- 458 (707)
Q Consensus 391 L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~~~~~l-- 458 (707)
|++|++++|++.. ...++.+++|++|++++|.++.+|.. ++++++|++|++++|......|.. +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccC
Confidence 9999998888654 12346788888899988888765542 467888899998886655554654 4555
Q ss_pred -CCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecc
Q 042869 459 -SRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGY 529 (707)
Q Consensus 459 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~ 529 (707)
++|++|++++|.+.. ++..+ .++|+.|++++|....+|. +..+++|+.|.++.+.
T Consensus 250 ~~~L~~L~Ls~N~l~~-------------lp~~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQ-------------VPKGL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSCCCS-------------CCSCC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCCCCc-------------hhhhh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 688888888887641 11122 2688888888888877765 5677888888876544
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=145.17 Aligned_cols=216 Identities=14% Similarity=0.131 Sum_probs=153.1
Q ss_pred cceEEeccCCCCCC-----CCCCCCCCccceeeeccccccccCchhh--cCCCCccEEEecCCCccc-CC----cccccc
Q 042869 321 VCTAISLNNSNISE-----PPQGFECPQLRFLCIGYHASLRIPSNFF--TGMTELRVLDFTQMYLLA-LP----SSLGLL 388 (707)
Q Consensus 321 ~~~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~-lp----~~i~~l 388 (707)
.++.+.+.+..+.. +.....+++|+.|++++|.+....+..+ ..+++|++|++++|.+.. .| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 34566666654422 1122245679999999888775544444 889999999999998876 33 334578
Q ss_pred CCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchhh---chHH--hhcCcCCCEEcCCCCCCCcccch---hhhhCC
Q 042869 389 QNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQK---LVEE--IGRLTQLRLLDLSNCSKLKVIPA---YVISSL 458 (707)
Q Consensus 389 ~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~---lp~~--i~~l~~L~~L~l~~~~~~~~~p~---~~~~~l 458 (707)
++|++|++++|.+.. +..++.+++|++|++++|++.. ++.. ++.+++|++|++++|. ++.++. ..++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcC
Confidence 899999999999877 3678899999999999997653 3322 3688999999999864 454443 235778
Q ss_pred CCCcEEEccCCCcccccccccccccccccHHHhhcC---CCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccCC
Q 042869 459 SRLEELYIGESPIEWGKVGGVDGERRNASLDELNNL---SKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVGP 535 (707)
Q Consensus 459 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~~ 535 (707)
++|++|++++|.+.. ..+..+..+ ++|++|++++|....+|..+. ++|+.|+++.+....++.
T Consensus 224 ~~L~~L~Ls~N~l~~------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 224 VQPHSLDLSHNSLRA------------TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCCSSEECTTSCCCC------------CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred CCCCEEECCCCCCCc------------cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch
Confidence 999999999998752 112223333 799999999999888888774 788999887665432211
Q ss_pred CCCccceEEeeecCCcceecchhHHHHhcccceEeecCCC
Q 042869 536 SDGISRMFRLKLTNGANICLNEGHIMQLKGIEDLTLDGLP 575 (707)
Q Consensus 536 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 575 (707)
...+++|+.|++++.+
T Consensus 290 ------------------------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 ------------------------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ------------------------TTSCCCCSCEECSSTT
T ss_pred ------------------------hhhCCCccEEECcCCC
Confidence 1246889999998754
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=6.9e-15 Score=153.90 Aligned_cols=234 Identities=16% Similarity=0.136 Sum_probs=157.9
Q ss_pred CCCccceeeeccccccccCc----hhhcCCCCccEEEecCCCccc----CCccc-------cccCCCCEEEecCCCCCC-
Q 042869 340 ECPQLRFLCIGYHASLRIPS----NFFTGMTELRVLDFTQMYLLA----LPSSL-------GLLQNLQTLSLENCKLGD- 403 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~----lp~~i-------~~l~~L~~L~l~~~~~~~- 403 (707)
.+++|+.|++++|.+..... ..+..+++|++|+++++.+.. +|..+ ..+++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 56788999998887765322 236678899999999875543 34444 678899999999998876
Q ss_pred -----cccccCCCCCcEEEcCCCchh-----hchHHhhcC---------cCCCEEcCCCCCCC-cccch--hhhhCCCCC
Q 042869 404 -----MAIIGDLKKLEILTLRGSNMQ-----KLVEEIGRL---------TQLRLLDLSNCSKL-KVIPA--YVISSLSRL 461 (707)
Q Consensus 404 -----~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p~--~~~~~l~~L 461 (707)
+..+.++++|++|++++|.+. .++..+..+ ++|++|++++|... ..+|. ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 246788899999999999775 234445555 89999999987654 33442 236788899
Q ss_pred cEEEccCCCcccccccccccccccccHH-HhhcCCCCcEEEEeeccC-----CCCCCChhhcccceEEEEEecceeccCC
Q 042869 462 EELYIGESPIEWGKVGGVDGERRNASLD-ELNNLSKLTSLEILIQDE-----KALPRDLSFFKMLQRYRILIGYWWSVGP 535 (707)
Q Consensus 462 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~p~~l~~~~~L~~L~l~~~~~~~~~~ 535 (707)
++|++++|.+.. ........ .+..+++|+.|++++|.. ..+|..+..+++|+.|.++.|.....
T Consensus 190 ~~L~L~~n~l~~--------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~-- 259 (386)
T 2ca6_A 190 HTVKMVQNGIRP--------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-- 259 (386)
T ss_dssp CEEECCSSCCCH--------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH--
T ss_pred CEEECcCCCCCH--------hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh--
Confidence 999999887631 01111233 677889999999998876 45667777888888888865432110
Q ss_pred CCCccceEEeeecCCcceecchhHH--HHhcccceEeecCCCCcch-----hhhhcccCcccccccccceeeccCcc
Q 042869 536 SDGISRMFRLKLTNGANICLNEGHI--MQLKGIEDLTLDGLPDIKN-----ILCELGREARTTAFSLLESLFLRDLR 605 (707)
Q Consensus 536 ~~~~~~~~~L~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~ 605 (707)
......... +.+++|+.|+++++. ++. ++..+ ...+|+|+.|++++++
T Consensus 260 ----------------~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-----~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 ----------------GAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-----DEKMPDLLFLELNGNR 314 (386)
T ss_dssp ----------------HHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-----HHHCTTCCEEECTTSB
T ss_pred ----------------hHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-----HhcCCCceEEEccCCc
Confidence 000001111 126889999998865 444 33221 1347899999998863
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=3.2e-14 Score=139.66 Aligned_cols=170 Identities=19% Similarity=0.192 Sum_probs=144.6
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcC
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLR 419 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~ 419 (707)
.+.++..+.+.++.+.+++ .+..+++|++|+++++.+..+| .++.+++|++|++++|.++..+.++.+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 4566777888888888777 3688999999999999999998 789999999999999999985559999999999999
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcE
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTS 499 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 499 (707)
+|.+..+|... . ++|++|++++| .++.++. ++.+++|+.|++++|.+. .. ..+..+++|+.
T Consensus 94 ~N~l~~l~~~~-~-~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~-------------~~-~~l~~l~~L~~ 154 (263)
T 1xeu_A 94 RNRLKNLNGIP-S-ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLK-------------SI-VMLGFLSKLEV 154 (263)
T ss_dssp SSCCSCCTTCC-C-SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCC-------------BC-GGGGGCTTCCE
T ss_pred CCccCCcCccc-c-CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCC-------------CC-hHHccCCCCCE
Confidence 99999887543 3 99999999996 4566664 889999999999999874 11 36888999999
Q ss_pred EEEeeccCCCCCCChhhcccceEEEEEecceec
Q 042869 500 LEILIQDEKALPRDLSFFKMLQRYRILIGYWWS 532 (707)
Q Consensus 500 L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~ 532 (707)
|++++|..... ..+..+++|+.|.++.+....
T Consensus 155 L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 155 LDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred EECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 99999998877 667889999999998876543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.1e-13 Score=131.86 Aligned_cols=148 Identities=20% Similarity=0.346 Sum_probs=119.3
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKL 401 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~ 401 (707)
+.+...++.+..+|.... ++++.|++++|.+..+++..|..+++|++|++++|.+..+ |..+..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 467777777777765433 7899999999998888888888899999999999998885 77889999999999999998
Q ss_pred CC-c-ccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 402 GD-M-AIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 402 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
+. + ..+..+++|++|++++|.+..++ ..+..+++|++|++++|. +..++...+..+++|+.|++.+|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 87 3 33678899999999999888764 567888999999998854 55566555788888899998888763
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=8.9e-14 Score=150.59 Aligned_cols=182 Identities=20% Similarity=0.204 Sum_probs=140.4
Q ss_pred cceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCC
Q 042869 321 VCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 321 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 400 (707)
.++.|++.++.+..+|... .++|+.|++++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6788889888888777643 488999999999888887 347899999999999988888 665 89999999999
Q ss_pred CCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccc
Q 042869 401 LGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVD 480 (707)
Q Consensus 401 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 480 (707)
++..+. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|.+.....
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~lp~---- 197 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESLPA---- 197 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSCCC----
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCchhh----
Confidence 888544 78899999999999888886 67899999999864 555777 44 889999999987751111
Q ss_pred cccccccHHHh-hcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecce
Q 042869 481 GERRNASLDEL-NNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYW 530 (707)
Q Consensus 481 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~ 530 (707)
....+ ...+.|+.|++++|....+|..+..+++|+.|+++.|..
T Consensus 198 ------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 ------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 00011 222334999999999999999888899999998876653
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=2.3e-14 Score=148.38 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=49.1
Q ss_pred cceeeeccccccccCc----hhhcCCC-CccEEEecCCCcccC-Ccccccc-----CCCCEEEecCCCCCC--ccc----
Q 042869 344 LRFLCIGYHASLRIPS----NFFTGMT-ELRVLDFTQMYLLAL-PSSLGLL-----QNLQTLSLENCKLGD--MAI---- 406 (707)
Q Consensus 344 L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~~~~--~~~---- 406 (707)
|+.|++++|.+...+. ..+.+++ +|++|++++|.+... +..+..+ ++|++|++++|.++. +..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 5555555555555444 3445555 555555555555542 3333333 555555555555443 111
Q ss_pred ccCC-CCCcEEEcCCCchhhchH-H----hhc-CcCCCEEcCCCC
Q 042869 407 IGDL-KKLEILTLRGSNMQKLVE-E----IGR-LTQLRLLDLSNC 444 (707)
Q Consensus 407 i~~l-~~L~~L~l~~~~l~~lp~-~----i~~-l~~L~~L~l~~~ 444 (707)
+..+ ++|++|++++|.+...+. . +.. .++|++|++++|
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 2233 555555555555543321 1 222 235555555554
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=130.57 Aligned_cols=148 Identities=16% Similarity=0.279 Sum_probs=110.7
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccC-chhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIP-SNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCK 400 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 400 (707)
+.+++.++.+..+|... .+.++.|++++|.+..++ ...|..+++|++|++++|.+..++. .++.+.+|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 46788888777766533 356788888888888773 4567888888888888888888554 68888888888888888
Q ss_pred CCC--cccccCCCCCcEEEcCCCchhhc-hHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 401 LGD--MAIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 401 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
++. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|.. ..++...+..+++|+.|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCCc
Confidence 877 34577888888888888888766 45677888888888888544 4443333778888888888887754
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=2.8e-13 Score=139.95 Aligned_cols=170 Identities=20% Similarity=0.280 Sum_probs=114.7
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhc-CCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFT-GMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 400 (707)
+.+++.++.+..+|... .+.++.|++++|.+..++...+. ++++|++|++++|.+..++ ..+..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 46677777776666432 34577788888777777777666 7788888888888777754 457777888888888887
Q ss_pred CCC--cccccCCCCCcEEEcCCCchhhc-hHHhhcCcCCCEEcCCCCCCCcccchhhh---hCCCCCcEEEccCCCcccc
Q 042869 401 LGD--MAIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIPAYVI---SSLSRLEELYIGESPIEWG 474 (707)
Q Consensus 401 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~---~~l~~L~~L~l~~~~~~~~ 474 (707)
++. +..+..+++|++|+|++|.+..+ |..+..+++|++|++++| .+..+|...+ ..+++|+.|++++|.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 176 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK-- 176 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC--
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC--
Confidence 776 23467778888888888777765 455777778888888774 4556666544 56777777777777664
Q ss_pred cccccccccccccHHHhhcCCC--CcEEEEeecc
Q 042869 475 KVGGVDGERRNASLDELNNLSK--LTSLEILIQD 506 (707)
Q Consensus 475 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 506 (707)
......+..++. ++.|++.+|.
T Consensus 177 ----------~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 177 ----------KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----------CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ----------ccCHHHhhhccHhhcceEEecCCC
Confidence 222344555554 3566666655
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=1.3e-13 Score=130.39 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=125.4
Q ss_pred ccccceEEeccCCCCCCCCC--CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEE
Q 042869 318 TLKVCTAISLNNSNISEPPQ--GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTL 394 (707)
Q Consensus 318 ~~~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 394 (707)
....++.|++.++.+..++. +..+++|+.|++++|.+..+++..|..+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 45689999999999987665 45899999999999999999998899999999999999999997765 6899999999
Q ss_pred EecCCCCCC-c-ccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc
Q 042869 395 SLENCKLGD-M-AIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 395 ~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
++++|.++. + ..+..+++|++|++++|.+..+|.. +..+++|++|++++|... +.+++|+.|++..+.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhC
Confidence 999999988 3 3478999999999999999988765 688999999999997543 3456677777766654
Q ss_pred c
Q 042869 472 E 472 (707)
Q Consensus 472 ~ 472 (707)
.
T Consensus 178 ~ 178 (208)
T 2o6s_A 178 S 178 (208)
T ss_dssp T
T ss_pred C
Confidence 3
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=5.4e-13 Score=121.40 Aligned_cols=139 Identities=23% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCCccEEEecCCCcc--cCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhh-chHHhhcCcCCCEEcC
Q 042869 365 MTELRVLDFTQMYLL--ALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQK-LVEEIGRLTQLRLLDL 441 (707)
Q Consensus 365 l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 441 (707)
.++|++|++++|.+. .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 467888888888887 6888888888888888888888777778888888888888888876 7777777888888888
Q ss_pred CCCCCCcccch-hhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCC
Q 042869 442 SNCSKLKVIPA-YVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRD 513 (707)
Q Consensus 442 ~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 513 (707)
++| .++.+|. ..+..+++|+.|++++|.+.... ......+..+++|+.|+++.+.....|..
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN---------DYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST---------THHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH---------HHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 886 4555542 33778888888888888764100 00113677888899988888887777754
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=3.3e-13 Score=128.56 Aligned_cols=146 Identities=16% Similarity=0.279 Sum_probs=100.3
Q ss_pred ceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCC
Q 042869 345 RFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGS 421 (707)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~ 421 (707)
+.++++++....+|..+ .++|+.|++++|.+..+|. .+..+++|++|+|++|.++. +..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777777777654 2577888888888877554 67778888888888888776 466777888888888888
Q ss_pred chhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEE
Q 042869 422 NMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSL 500 (707)
Q Consensus 422 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 500 (707)
.+..+|.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+. ......+..+++|+.|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ------------TIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS------------CCCTTTTTTCTTCCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC------------EECHHHHhCCCCCCEE
Confidence 77777755 4667788888887754 34444334677777777777777654 1122335556666676
Q ss_pred EEeecc
Q 042869 501 EILIQD 506 (707)
Q Consensus 501 ~l~~~~ 506 (707)
++++|.
T Consensus 158 ~L~~N~ 163 (220)
T 2v9t_B 158 HLAQNP 163 (220)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 666654
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=5.5e-13 Score=127.01 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=108.0
Q ss_pred cceeeeccccccccCchhhcCCCCccEEEecCCCcccCC--ccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 344 LRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP--SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 344 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
-+.++++++.+..+|..+ ...+++|++++|.+..++ ..++.+++|++|++++|.++. +..++.+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357888888888887654 345678888888888863 237888888888888888877 3468888888888888
Q ss_pred CCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCc
Q 042869 420 GSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLT 498 (707)
Q Consensus 420 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 498 (707)
+|.+..+|.. +..+++|++|++++|.. ..++...+..+++|+.|++++|.+. ...+..+..+++|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT------------TVAPGAFDTLHSLS 156 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCC------------CBCTTTTTTCTTCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCC------------EECHHHhcCCCCCC
Confidence 8888877654 77888888888888554 4443333778888888888888764 22234566777777
Q ss_pred EEEEeeccC
Q 042869 499 SLEILIQDE 507 (707)
Q Consensus 499 ~L~l~~~~~ 507 (707)
.|++++|..
T Consensus 157 ~L~L~~N~l 165 (220)
T 2v70_A 157 TLNLLANPF 165 (220)
T ss_dssp EEECCSCCE
T ss_pred EEEecCcCC
Confidence 777777653
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=5.8e-13 Score=137.55 Aligned_cols=162 Identities=27% Similarity=0.335 Sum_probs=136.4
Q ss_pred cccCCCCccccccceEEeccCCCCCCCCCC--C-CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-c
Q 042869 309 ALTSWPDKDTLKVCTAISLNNSNISEPPQG--F-ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-S 384 (707)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~ 384 (707)
.+...+. ..+..++.|++++|.+..++.. . .+++|+.|++++|.+..+++..|.++++|++|++++|.+..+|. .
T Consensus 29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 3444443 3456789999999999876543 3 78999999999999999998889999999999999999999654 6
Q ss_pred ccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchhhchHHh----hcCcCCCEEcCCCCCCCcccchhhhhCC
Q 042869 385 LGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLVEEI----GRLTQLRLLDLSNCSKLKVIPAYVISSL 458 (707)
Q Consensus 385 i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~~~~~p~~~~~~l 458 (707)
+..+.+|++|+|++|.++. +..+..+++|++|+|++|.+..+|..+ ..+++|++|++++| .+..+|...+..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 186 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKL 186 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHS
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhc
Confidence 8999999999999999987 567999999999999999999998775 67999999999995 5677886668888
Q ss_pred CC--CcEEEccCCCcc
Q 042869 459 SR--LEELYIGESPIE 472 (707)
Q Consensus 459 ~~--L~~L~l~~~~~~ 472 (707)
+. |+.|++.+|++.
T Consensus 187 ~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHTTEECCSSCEE
T ss_pred cHhhcceEEecCCCcc
Confidence 87 488999998864
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=1e-13 Score=143.43 Aligned_cols=203 Identities=13% Similarity=0.122 Sum_probs=149.8
Q ss_pred cccceEEeccCCCCCCCCC------CCCCC-ccceeeeccccccccCchhhcCC-----CCccEEEecCCCcccCC-cc-
Q 042869 319 LKVCTAISLNNSNISEPPQ------GFECP-QLRFLCIGYHASLRIPSNFFTGM-----TELRVLDFTQMYLLALP-SS- 384 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~- 384 (707)
...+++|++.+|.+...+. +..++ +|+.|++++|.+.......+..+ ++|++|++++|.+...+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4568999999999876542 33677 89999999999887655555553 99999999999998754 33
Q ss_pred ---cccc-CCCCEEEecCCCCCCc--cc----ccC-CCCCcEEEcCCCchh-----hchHHhhcCc-CCCEEcCCCCCCC
Q 042869 385 ---LGLL-QNLQTLSLENCKLGDM--AI----IGD-LKKLEILTLRGSNMQ-----KLVEEIGRLT-QLRLLDLSNCSKL 447 (707)
Q Consensus 385 ---i~~l-~~L~~L~l~~~~~~~~--~~----i~~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~~ 447 (707)
+..+ ++|++|++++|.++.. .. +.. ..+|++|++++|.+. .++..+..++ +|++|++++|...
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4444 8999999999998762 22 344 369999999999887 5667777776 9999999997654
Q ss_pred cccchh---hhhCC-CCCcEEEccCCCcccccccccccccccccHHHhhc-CCCCcEEEEeeccCCCCCC-----Chhhc
Q 042869 448 KVIPAY---VISSL-SRLEELYIGESPIEWGKVGGVDGERRNASLDELNN-LSKLTSLEILIQDEKALPR-----DLSFF 517 (707)
Q Consensus 448 ~~~p~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~p~-----~l~~~ 517 (707)
...+.. .+..+ ++|++|++++|.+.. .........+.. .++|++|++++|.....+. .+..+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~--------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGL--------KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGG--------SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCCh--------hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 444332 23445 699999999998751 112234456666 4599999999998766543 23567
Q ss_pred ccceEEEEEecc
Q 042869 518 KMLQRYRILIGY 529 (707)
Q Consensus 518 ~~L~~L~l~~~~ 529 (707)
++|+.|.++.+.
T Consensus 253 ~~L~~L~L~~n~ 264 (362)
T 3goz_A 253 KHLQTVYLDYDI 264 (362)
T ss_dssp TTCSEEEEEHHH
T ss_pred CCccEEEeccCC
Confidence 888999887665
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1e-12 Score=126.15 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=119.6
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCCc--ccccCCCCCcEEEcC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGDM--AIIGDLKKLEILTLR 419 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~--~~i~~l~~L~~L~l~ 419 (707)
..+.++++++....+|..+ .++|++|++++|.+..+ |..+..+++|++|+|++|.++.. ..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4567888888888888754 48899999999999886 67788999999999999998773 446889999999999
Q ss_pred CCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCc
Q 042869 420 GSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLT 498 (707)
Q Consensus 420 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 498 (707)
+|.+..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++++|.+. ......+..+++|+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK------------SIPHGAFDRLSSLT 162 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC------------CCCTTTTTTCTTCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC------------ccCHHHHhCCCCCC
Confidence 9998888765 578999999999985 45688876 688999999999988764 12224567788888
Q ss_pred EEEEeeccCC
Q 042869 499 SLEILIQDEK 508 (707)
Q Consensus 499 ~L~l~~~~~~ 508 (707)
.|++.+|...
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 8888887654
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=2.2e-12 Score=117.33 Aligned_cols=127 Identities=24% Similarity=0.319 Sum_probs=57.6
Q ss_pred Cccceeeecccccc--ccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-c-ccccCCCCCcEEE
Q 042869 342 PQLRFLCIGYHASL--RIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-M-AIIGDLKKLEILT 417 (707)
Q Consensus 342 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~ 417 (707)
++|+.|++++|.+. .+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444443 33322 34444555555555544444 444445555555555555444 2 2223355555555
Q ss_pred cCCCchhhch--HHhhcCcCCCEEcCCCCCCCcccch---hhhhCCCCCcEEEccCCCc
Q 042869 418 LRGSNMQKLV--EEIGRLTQLRLLDLSNCSKLKVIPA---YVISSLSRLEELYIGESPI 471 (707)
Q Consensus 418 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~ 471 (707)
+++|.+..+| ..+..+++|++|++++|. +..+|. ..+..+++|+.|++..|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555444443 344445555555555432 223332 2244555555555554443
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=3e-12 Score=138.59 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=135.4
Q ss_pred cccceEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecC
Q 042869 319 LKVCTAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLEN 398 (707)
Q Consensus 319 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 398 (707)
...++.|++.+|.+..+| ..+++|+.|++++|.+..+|. +.+ +|++|++++|.++.+|. .+++|++|++++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence 467999999999999888 567999999999999988887 444 99999999999999988 689999999999
Q ss_pred CCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCC-------cEEEccCCCc
Q 042869 399 CKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRL-------EELYIGESPI 471 (707)
Q Consensus 399 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L-------~~L~l~~~~~ 471 (707)
|.++..+. .+++|++|++++|.++.+|. +. ++|+.|++++| .++.+|. +.. +| +.|++++|.+
T Consensus 150 N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 150 NQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSSCC
T ss_pred CccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCCCcc
Confidence 99988544 67899999999999999888 65 89999999996 5567776 333 66 9999999987
Q ss_pred ccccccccccccccccHHHhhcCCCCcEEEEeeccCCC-CCCChhhc
Q 042869 472 EWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKA-LPRDLSFF 517 (707)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~l~~~ 517 (707)
. .++..+..+++|+.|++++|.... .|..+..+
T Consensus 220 ~-------------~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 220 T-------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-------------CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred e-------------ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4 345567779999999999998643 44444333
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=8.8e-15 Score=159.40 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=90.0
Q ss_pred CCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 390 NLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 390 ~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
.|++|++++|.++..+.++.+++|++|++++|.+..+|..++++++|+.|++++| .++.+| . ++++++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCC
Confidence 5778888888887755588888888888888888888888888888888888885 445577 3 788888888888888
Q ss_pred Cccccccccccccccccc-HHHhhcCCCCcEEEEeeccCCCCCCCh----hhcccceEEE
Q 042869 470 PIEWGKVGGVDGERRNAS-LDELNNLSKLTSLEILIQDEKALPRDL----SFFKMLQRYR 524 (707)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~l----~~~~~L~~L~ 524 (707)
.+. ... +..++.+++|+.|++++|.....|+.+ ..+++|+.|+
T Consensus 519 ~l~------------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQ------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCC------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCC------------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 764 222 566778888888888888877776654 3366777664
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=2.4e-12 Score=114.45 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCCccEEEecCCCcc--cCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhh-chHHhhcCcCCCEEcC
Q 042869 365 MTELRVLDFTQMYLL--ALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQK-LVEEIGRLTQLRLLDL 441 (707)
Q Consensus 365 l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 441 (707)
.++|+.|++++|.+. .+|..++.+++|++|++++|.++....++.+++|++|++++|.+.. +|..++.+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 456677777777766 4666667777777777777776666666677777777777777665 6666666777777777
Q ss_pred CCCCCCcccch-hhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEe
Q 042869 442 SNCSKLKVIPA-YVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEIL 503 (707)
Q Consensus 442 ~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 503 (707)
++|. ++.+|. ..++.+++|++|++++|.+.... ......+..+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN---------DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST---------THHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH---------HHHHHHHHHCCCcccccCC
Confidence 7754 344331 22666777777777776653000 0001346666677766543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=3e-12 Score=113.79 Aligned_cols=123 Identities=23% Similarity=0.345 Sum_probs=63.2
Q ss_pred Cccceeeecccccc--ccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-c-ccccCCCCCcEEE
Q 042869 342 PQLRFLCIGYHASL--RIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-M-AIIGDLKKLEILT 417 (707)
Q Consensus 342 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~ 417 (707)
++|+.|++++|.+. .+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555554444 3332 345555555555555555555 445555555555555555554 2 2333455555555
Q ss_pred cCCCchhhch--HHhhcCcCCCEEcCCCCCCCcccch---hhhhCCCCCcEEEcc
Q 042869 418 LRGSNMQKLV--EEIGRLTQLRLLDLSNCSKLKVIPA---YVISSLSRLEELYIG 467 (707)
Q Consensus 418 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~ 467 (707)
+++|.+..+| ..++.+++|++|++++|. +..+|. ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 5555555443 445555566666665542 233332 235555566655543
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=3.2e-12 Score=117.14 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-ccc-ccCCCCCcEEE
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAI-IGDLKKLEILT 417 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~-i~~l~~L~~L~ 417 (707)
.+++|+.|++++|.+..++. +....++|++|++++|.+..+ ..++.+++|++|++++|.++. ++. ++.+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34455555555555554432 222223556666665555554 445555566666666665554 222 25556666666
Q ss_pred cCCCchhhchH--HhhcCcCCCEEcCCCCCCCcccchh---hhhCCCCCcEEEccCCCc
Q 042869 418 LRGSNMQKLVE--EIGRLTQLRLLDLSNCSKLKVIPAY---VISSLSRLEELYIGESPI 471 (707)
Q Consensus 418 l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~---~~~~l~~L~~L~l~~~~~ 471 (707)
+++|.+..+|. .+..+++|++|++++|. +..+|.. ++..+++|+.|+++.|..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66665555554 45556666666665543 2334432 355566666666655543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=9.8e-13 Score=120.60 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=80.2
Q ss_pred hcCCCCccEEEecCCCcccCCccccccC-CCCEEEecCCCCCCcccccCCCCCcEEEcCCCchhhchHHh-hcCcCCCEE
Q 042869 362 FTGMTELRVLDFTQMYLLALPSSLGLLQ-NLQTLSLENCKLGDMAIIGDLKKLEILTLRGSNMQKLVEEI-GRLTQLRLL 439 (707)
Q Consensus 362 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 439 (707)
+.++.+|++|++++|.+..+|. +..+. +|++|++++|.++....++.+++|++|++++|.+..+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3456667777777776666643 34443 67777777776666566666677777777777666666444 666777777
Q ss_pred cCCCCCCCcccch-hhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeecc
Q 042869 440 DLSNCSKLKVIPA-YVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQD 506 (707)
Q Consensus 440 ~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 506 (707)
++++|. ++.+|. ..+..+++|+.|++++|.+.... ......+..+++|+.|+++.+.
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---------~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK---------HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST---------THHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH---------hHHHHHHHHCCccceeCCCcCC
Confidence 776643 355554 12566667777777666653100 0011235666677777666654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=7.7e-12 Score=116.21 Aligned_cols=124 Identities=20% Similarity=0.312 Sum_probs=94.7
Q ss_pred ceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCc
Q 042869 345 RFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSN 422 (707)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~ 422 (707)
++++++++.+..+|..+ .++|++|++++|.+..+|..+..+.+|++|++++|.++. +..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45666666677777553 357888888888888888888888888888888888877 3457888888888888888
Q ss_pred hhhchH-HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 423 MQKLVE-EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 423 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
+..++. .+..+++|++|++++| .+..+|...+..+++|+.|++.+|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 887764 4778888888888884 456666655778888888888888753
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=6.7e-12 Score=116.68 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=68.0
Q ss_pred ceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc--ccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCC
Q 042869 345 RFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS--LGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRG 420 (707)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~ 420 (707)
++++++++.+..+|..+. .+|++|++++|.+..++.. ++.+++|++|+|++|.++. +..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 445555555555554332 2556666666666555432 5566666666666666555 34555666666666666
Q ss_pred CchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCc
Q 042869 421 SNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 421 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
|.+..++.. +..+++|++|++++|...+..|.. +..+++|++|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCc
Confidence 666555432 555666666666664433333332 55666666666666654
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=2.7e-11 Score=112.52 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=110.2
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCch-hhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSN-FFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCK 400 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 400 (707)
+.+++.++.+..+|... .++++.|++++|.+..+++. .|..+++|++|++++|.+..+ |..++.+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67889999888877644 24999999999999988864 689999999999999999995 7889999999999999999
Q ss_pred CCC--cccccCCCCCcEEEcCCCchhhc-hHHhhcCcCCCEEcCCCCCCCcccc
Q 042869 401 LGD--MAIIGDLKKLEILTLRGSNMQKL-VEEIGRLTQLRLLDLSNCSKLKVIP 451 (707)
Q Consensus 401 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p 451 (707)
++. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|......+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 988 34588999999999999999866 6678899999999999976654433
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1.5e-12 Score=146.56 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=49.7
Q ss_pred CCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEc
Q 042869 340 ECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTL 418 (707)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l 418 (707)
.+++|+.|++++|.+..+|..++ ++++|++|+|++|.+..+|..|+.|++|++|+|++|.++. |..+++|++|++|+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 34444444444444444444332 4444444444444444444444444444444444444444 334444444444444
Q ss_pred CCCchhhchHHhhcCcCCCEEcCCCCC
Q 042869 419 RGSNMQKLVEEIGRLTQLRLLDLSNCS 445 (707)
Q Consensus 419 ~~~~l~~lp~~i~~l~~L~~L~l~~~~ 445 (707)
++|.+..+|..+++|++|++|++++|.
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCc
Confidence 444444444444444444444444443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4e-11 Score=109.94 Aligned_cols=120 Identities=24% Similarity=0.350 Sum_probs=56.7
Q ss_pred EEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEEecCCCCC
Q 042869 324 AISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLSLENCKLG 402 (707)
Q Consensus 324 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~ 402 (707)
.+.+.++.+..+|.. ..++|+.|++++|.+..+++..+..+++|++|++++|.+..+|.. ++.+++|++|++++|.++
T Consensus 11 ~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 444555544444422 124555555555555555544455555555555555555554332 344555555555555544
Q ss_pred C-c-ccccCCCCCcEEEcCCCchhhchHHh-hcCcCCCEEcCCCC
Q 042869 403 D-M-AIIGDLKKLEILTLRGSNMQKLVEEI-GRLTQLRLLDLSNC 444 (707)
Q Consensus 403 ~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~ 444 (707)
. + ..+..+++|++|++++|.+..+|..+ ..+++|++|++++|
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 4 1 12344455555555554444444332 33444444444443
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=8.8e-12 Score=140.24 Aligned_cols=150 Identities=20% Similarity=0.275 Sum_probs=100.9
Q ss_pred ccceEEeccCCCCCCCCCC-CCCCccceeeec-----cccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCE
Q 042869 320 KVCTAISLNNSNISEPPQG-FECPQLRFLCIG-----YHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQT 393 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~~~~-~~~~~L~~L~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 393 (707)
..++.+.+.++.+...+.. .....|+.+.+. .+... +++..+..++.|++|+|++|.+..+|..+..+.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 3467777776666543322 233334433333 23222 5566789999999999999999999999999999999
Q ss_pred EEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 394 LSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 394 L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
|+|++|.++. |..+++|++|++|+|++|.+..+|..+++|++|++|++++| .++.+|.. +++|++|+.|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999988 67899999999999999999999999999999999999996 56789987 899999999999999875
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=2.8e-11 Score=131.76 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=98.2
Q ss_pred CccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEEcCCCCC
Q 042869 367 ELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLLDLSNCS 445 (707)
Q Consensus 367 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 445 (707)
.|++|++++|.++.+|. ++.+++|++|+|++|.++. |..++++++|++|+|++|.++.+| .++++++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58899999999988887 8999999999999999887 678899999999999999988888 78999999999999865
Q ss_pred CCccc--chhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEE
Q 042869 446 KLKVI--PAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLE 501 (707)
Q Consensus 446 ~~~~~--p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 501 (707)
. ..+ |.. ++++++|+.|++++|.+.... ......+..+++|+.|+
T Consensus 520 l-~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~---------~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 L-QQSAAIQP-LVSCPRLVLLNLQGNSLCQEE---------GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp C-CSSSTTGG-GGGCTTCCEEECTTSGGGGSS---------SCTTHHHHHCTTCSEEE
T ss_pred C-CCCCCcHH-HhcCCCCCEEEecCCcCCCCc---------cHHHHHHHHCcccCccC
Confidence 4 444 665 888999999999998875211 11223445578888875
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=5.9e-11 Score=110.23 Aligned_cols=122 Identities=20% Similarity=0.302 Sum_probs=106.5
Q ss_pred eEEeccCCCCCCCCCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCC
Q 042869 323 TAISLNNSNISEPPQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKL 401 (707)
Q Consensus 323 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~ 401 (707)
+.+++.++.+..+|... .++|+.|++++|.+..+| ..|.++++|++|++++|.+..++ ..|..+.+|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56888888888877543 478999999999999888 46899999999999999999975 5699999999999999999
Q ss_pred CC--cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCCC
Q 042869 402 GD--MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCSK 446 (707)
Q Consensus 402 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 446 (707)
+. +..+..+++|++|++++|.+..+|.. +..+++|+.|++++|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 88 35689999999999999999988874 78899999999998654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=9.6e-11 Score=107.38 Aligned_cols=126 Identities=24% Similarity=0.392 Sum_probs=103.2
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCCCCCc--ccccCCCCCcEEEcC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCKLGDM--AIIGDLKKLEILTLR 419 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~i~~l~~L~~L~l~ 419 (707)
+.+.+++.++....+|..+ .++|++|++++|.+..+|. .++.+++|++|++++|.++.. ..++.+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567888888888888654 4689999999999988765 468899999999999998873 346889999999999
Q ss_pred CCchhhchHH-hhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 420 GSNMQKLVEE-IGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 420 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
+|.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 9999888765 578999999999985 556777766788999999999988764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=1.4e-12 Score=122.15 Aligned_cols=108 Identities=22% Similarity=0.306 Sum_probs=72.6
Q ss_pred hhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC-cccccCCCCCcEEEcCCCchhhchHHhhcCcCCCEE
Q 042869 361 FFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEILTLRGSNMQKLVEEIGRLTQLRLL 439 (707)
Q Consensus 361 ~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 439 (707)
.+..+++|++|++++|.+..+| .++.+++|++|++++|.++. +..++.+++|++|++++|.+..+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 3566777777777777777766 67777777777777777666 444555677777777777776666 46677777777
Q ss_pred cCCCCCCCcccch-hhhhCCCCCcEEEccCCCc
Q 042869 440 DLSNCSKLKVIPA-YVISSLSRLEELYIGESPI 471 (707)
Q Consensus 440 ~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~ 471 (707)
++++|. +..++. ..+..+++|++|++.+|.+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 777643 344432 2366777777777777765
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.7e-12 Score=121.65 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=107.7
Q ss_pred CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCCcccccCCCCCcEEE
Q 042869 338 GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGDMAIIGDLKKLEILT 417 (707)
Q Consensus 338 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~ 417 (707)
+..+++|+.|++++|.+..+| .+.++++|++|++++|.+..+|..+..+++|++|++++|.++..+.++.+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 447899999999999988887 578899999999999999999998888999999999999999977899999999999
Q ss_pred cCCCchhhchH--HhhcCcCCCEEcCCCCCCCcccch---------hhhhCCCCCcEEE
Q 042869 418 LRGSNMQKLVE--EIGRLTQLRLLDLSNCSKLKVIPA---------YVISSLSRLEELY 465 (707)
Q Consensus 418 l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~---------~~~~~l~~L~~L~ 465 (707)
+++|.+..+|. .+..+++|++|++++|......|. .++..+++|+.|+
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999987764 788999999999999754333332 2366778888776
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=7.2e-10 Score=100.83 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=51.9
Q ss_pred ceeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCC-cc-cccCCCCCcEEEcCCC
Q 042869 345 RFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGD-MA-IIGDLKKLEILTLRGS 421 (707)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~~-~i~~l~~L~~L~l~~~ 421 (707)
+.++++++.+..+|..+ .++|++|++++|.+..+ |..++.+++|++|+|++|.++. +. .+.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455555555555433 24555555555555554 3445555555555555555555 22 2355556666666665
Q ss_pred chhhchHH-hhcCcCCCEEcCCCC
Q 042869 422 NMQKLVEE-IGRLTQLRLLDLSNC 444 (707)
Q Consensus 422 ~l~~lp~~-i~~l~~L~~L~l~~~ 444 (707)
.+..+|.. +..+++|++|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 55555543 555666666666554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=9.6e-10 Score=100.03 Aligned_cols=102 Identities=24% Similarity=0.414 Sum_probs=87.2
Q ss_pred ccEEEecCCCcccCCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCC
Q 042869 368 LRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNC 444 (707)
Q Consensus 368 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 444 (707)
-+.++++++.+..+|..+. .+|++|+|++|.++. +..++++++|++|+|++|++..+|.. +.++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999998775 899999999999887 45788999999999999999998876 478999999999984
Q ss_pred CCCcccchhhhhCCCCCcEEEccCCCcc
Q 042869 445 SKLKVIPAYVISSLSRLEELYIGESPIE 472 (707)
Q Consensus 445 ~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 472 (707)
.+..+|...+.++++|+.|++.+|.+.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 566777666788999999999888764
No 141
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.00 E-value=5.4e-09 Score=107.72 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=142.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-----cCHHHHHHHHHHHhchh------------------hhh---
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-----PQIKNIQGEIAEKIGLE------------------LAE--- 54 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~~~l~~~------------------~~~--- 54 (707)
++|+|||||++++++.... ..+|+++... .+...+...+.+.+... ...
T Consensus 38 ~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 112 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEI 112 (357)
T ss_dssp STTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSE
T ss_pred CCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEE
Confidence 4799999999999987532 2578887643 34455555555443210 000
Q ss_pred cc----hhhHHHHHHHHHHhc-C-CcEEEEEeCCCCcc-----cccccccccCCCCCCeEEEEeeCCccccc--------
Q 042869 55 QS----HETVRAGRLLERLKK-E-PKILIILDDIWGSL-----DLEAIGIPFADNNSGCKVLLTARSQDVLS-------- 115 (707)
Q Consensus 55 ~~----~~~~~~~~~~~~l~~-~-kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtr~~~v~~-------- 115 (707)
.. ........+.+.+.+ . ++++||+||++... ++..+...+.....+.++|+|++......
T Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~ 192 (357)
T 2fna_A 113 KFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDP 192 (357)
T ss_dssp EEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCT
T ss_pred EeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCC
Confidence 00 001123334444433 1 38999999997632 23222222222224788999999764211
Q ss_pred -c-ccCC-cceEEeecCChHHHHHHHHhhhcC-CCCCchhHHHHHHHHHHcCCcchHHHHHHHHhc-cCChhHHHH-HHH
Q 042869 116 -C-KMDC-QQNFFVDVLNEKEAWSLFKKMTGD-CRENGELKSVAAEIVKECAGLPIAIVPIAKALK-NKSPYEWRN-ALR 189 (707)
Q Consensus 116 -~-~~~~-~~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~-~~~~~~w~~-~l~ 189 (707)
. ..+. ...+.+.+|+.+++.+++.+.... ...... ...|++.++|+|+++..++..+. ..+...|.. +.+
T Consensus 193 ~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (357)
T 2fna_A 193 ESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE 268 (357)
T ss_dssp TSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH
Confidence 0 0111 257899999999999999876531 111222 17899999999999999988764 233333321 111
Q ss_pred HHHHhhccCCCccccccceeeeeeecccCChHHHHHHHHHhccccccchhhhHHhhh-cccccccchhHHHHHHHHHHHH
Q 042869 190 QLERTFLRSFSGTQAVAAYSTIELSYYQLEGEELRQTFLLIGYTFISCVKDVIYYGM-GLGLFQNINTLEEARDRAHTLI 268 (707)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~~~fp~~~~~~li~~w~-~~g~~~~~~~~~~~~~~~~~~~ 268 (707)
....... ..+...+.- ...+++. .+..+..+|.-+ ....+..... ..|. . ........++
T Consensus 269 ~~~~~~~--------~~l~~~~~~-~~~l~~~-~~~~l~~la~g~--~~~~l~~~~~~~~g~--~-----~~~~~~~~~L 329 (357)
T 2fna_A 269 YAKKLIL--------KEFENFLHG-REIARKR-YLNIMRTLSKCG--KWSDVKRALELEEGI--E-----ISDSEIYNYL 329 (357)
T ss_dssp HHHHHHH--------HHHHHHHTT-CGGGHHH-HHHHHHHHTTCB--CHHHHHHHHHHHHCS--C-----CCHHHHHHHH
T ss_pred HHHHHHH--------HHHHHHhhc-cccccHH-HHHHHHHHHcCC--CHHHHHHHHHHhcCC--C-----CCHHHHHHHH
Confidence 1110000 000000000 0156666 588888887622 3232221110 0010 0 0112345678
Q ss_pred HHHhhhcccccCCccccee-hhHHHHHhh
Q 042869 269 DKLKNSCLLLDGWRSEWFS-MHDVVRDVA 296 (707)
Q Consensus 269 ~~L~~~~ll~~~~~~~~~~-mHdli~~la 296 (707)
+.|.+.+++...+ ..|+ .|+++++..
T Consensus 330 ~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 330 TQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred HHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 8999999987653 3354 678888753
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.2e-09 Score=99.05 Aligned_cols=100 Identities=24% Similarity=0.378 Sum_probs=48.0
Q ss_pred cEEEecCCCcccCCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchhhchHH-hhcCcCCCEEcCCCCC
Q 042869 369 RVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLVEE-IGRLTQLRLLDLSNCS 445 (707)
Q Consensus 369 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 445 (707)
++++++++.+..+|..+. .+|++|+|++|.++. +..+..+++|++|++++|++..+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 344444444444444332 445555555555444 23344555555555555555544433 245555555555553
Q ss_pred CCcccchhhhhCCCCCcEEEccCCCc
Q 042869 446 KLKVIPAYVISSLSRLEELYIGESPI 471 (707)
Q Consensus 446 ~~~~~p~~~~~~l~~L~~L~l~~~~~ 471 (707)
.+..+|...+.++++|+.|++++|++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 33344433345555555555555543
No 143
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.99 E-value=3.6e-09 Score=108.76 Aligned_cols=263 Identities=13% Similarity=0.060 Sum_probs=141.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc------CHHHHHHHHHHHhchh---------------hhh---cc
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP------QIKNIQGEIAEKIGLE---------------LAE---QS 56 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~~~~~~~~i~~~l~~~---------------~~~---~~ 56 (707)
++|+|||||++++++.. + ++|+++.... +...+.+.+.+.+... ... ..
T Consensus 39 ~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKL 111 (350)
T ss_dssp CTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGC
T ss_pred CCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccc
Confidence 47999999999998764 1 6777765432 5667777776665431 000 01
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEeCCCCccc---------ccccccccCCCCCCeEEEEeeCCccccc---------c-c
Q 042869 57 HETVRAGRLLERLKKEPKILIILDDIWGSLD---------LEAIGIPFADNNSGCKVLLTARSQDVLS---------C-K 117 (707)
Q Consensus 57 ~~~~~~~~~~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~iivTtr~~~v~~---------~-~ 117 (707)
...+....+.+.....++++||+||++...+ +..+.. +.....+.++|+|++...+.. . .
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l 190 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-AYDSLPNLKIILTGSEVGLLHDFLKITDYESPL 190 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH-HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH-HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence 1112222232222221389999999986543 122221 111124788999988754211 0 0
Q ss_pred c-CCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcc-CChhHHH-HHHHHHHHh
Q 042869 118 M-DCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKALKN-KSPYEWR-NALRQLERT 194 (707)
Q Consensus 118 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~-~~~~~w~-~~l~~l~~~ 194 (707)
. .....+.+.+|+.+|+.+++.+........ ...+.+..+++.++|+|+++..++..+.. .+...+. ...+.....
T Consensus 191 ~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
T 2qen_A 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL 269 (350)
T ss_dssp TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH
Confidence 1 112478999999999999998754321111 12346789999999999999999876532 2332221 111111100
Q ss_pred hccCCCccccccceeeeeeecccCChHHHHHHHHHhccccccchhhhHHhhhc-ccccccchhHHHHHHHHHHHHHHHhh
Q 042869 195 FLRSFSGTQAVAAYSTIELSYYQLEGEELRQTFLLIGYTFISCVKDVIYYGMG-LGLFQNINTLEEARDRAHTLIDKLKN 273 (707)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~~~fp~~~~~~li~~w~~-~g~~~~~~~~~~~~~~~~~~~~~L~~ 273 (707)
.. ..+. .+.+ + ++. .+..+..+|. -......+...... .| +. .......+++.|.+
T Consensus 270 ~~--------~~l~---~l~~-~-~~~-~~~~l~~la~-g~~~~~~l~~~~~~~~~---~~-----~~~~~~~~l~~L~~ 326 (350)
T 2qen_A 270 IM--------GELE---ELRR-R-SPR-YVDILRAIAL-GYNRWSLIRDYLAVKGT---KI-----PEPRLYALLENLKK 326 (350)
T ss_dssp HH--------HHHH---HHHH-H-CHH-HHHHHHHHHT-TCCSHHHHHHHHHHTTC---CC-----CHHHHHHHHHHHHH
T ss_pred HH--------HHHH---HHHh-C-Chh-HHHHHHHHHh-CCCCHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHh
Confidence 00 0000 0111 1 444 5778777776 22222333222111 10 00 12234567888999
Q ss_pred hcccccCCcccceehhHHHHHhh
Q 042869 274 SCLLLDGWRSEWFSMHDVVRDVA 296 (707)
Q Consensus 274 ~~ll~~~~~~~~~~mHdli~~la 296 (707)
.+++...+ ..+.-.|.+++++.
T Consensus 327 ~gli~~~~-~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 327 MNWIVEED-NTYKIADPVVATVL 348 (350)
T ss_dssp TTSEEEET-TEEEESSHHHHHHH
T ss_pred CCCEEecC-CEEEEecHHHHHHH
Confidence 99986542 23334577877764
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=2.1e-09 Score=97.44 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=45.0
Q ss_pred eeeeccccccccCchhhcCCCCccEEEecCCCcccC-CccccccCCCCEEEecCCCCCC-c-ccccCCCCCcEEEcCCCc
Q 042869 346 FLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCKLGD-M-AIIGDLKKLEILTLRGSN 422 (707)
Q Consensus 346 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~ 422 (707)
.|+++++.+..+|..+ .++|++|++++|.+..+ |..++.+++|++|+|++|.++. + ..+..+++|++|++++|.
T Consensus 13 ~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4444444444444332 24445555555555443 3334455555555555555444 1 223445555555555555
Q ss_pred hhhchHH-hhcCcCCCEEcCCCC
Q 042869 423 MQKLVEE-IGRLTQLRLLDLSNC 444 (707)
Q Consensus 423 l~~lp~~-i~~l~~L~~L~l~~~ 444 (707)
+..+|.. +.++++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCC
Confidence 5544432 445555555555553
No 145
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.97 E-value=6.1e-09 Score=109.67 Aligned_cols=258 Identities=17% Similarity=0.101 Sum_probs=144.6
Q ss_pred CCCCcHHHHHHHHHHHhhhc---cCCCc-EEEEEecCCcCHHHHHHHHHHHhchhhhhcch-hhHHHHHHHHHHh-cCCc
Q 042869 1 MGGIGKTTLVKEVGRQVKEN---NLFEK-VISSRVSQTPQIKNIQGEIAEKIGLELAEQSH-ETVRAGRLLERLK-KEPK 74 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~---~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~-~~kr 74 (707)
++|+||||||+++++..... ..|+. ++|+++....+..+++..++++++........ ..+....+.+.+. .+++
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 139 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHY 139 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 48999999999999876542 12333 67888777778899999999988764322111 2223344444443 2578
Q ss_pred EEEEEeCCCCcc--------cccccccccCCC---C--CCeEEEEeeCCcccccc--------ccCCcceEEeecCChHH
Q 042869 75 ILIILDDIWGSL--------DLEAIGIPFADN---N--SGCKVLLTARSQDVLSC--------KMDCQQNFFVDVLNEKE 133 (707)
Q Consensus 75 ~LlVlDdv~~~~--------~~~~l~~~l~~~---~--~gs~iivTtr~~~v~~~--------~~~~~~~~~l~~L~~~~ 133 (707)
++||+||++... .+..+...+... + ....||+||+...+... .......+.+++++.++
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRE 219 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence 999999997642 122222222111 2 34558888876543210 00112239999999999
Q ss_pred HHHHHHhhhcC-CCCCchhHHHHHHHHHHcC------CcchHHHHHHHHhc------cC---ChhHHHHHHHHHHHhhcc
Q 042869 134 AWSLFKKMTGD-CRENGELKSVAAEIVKECA------GLPIAIVPIAKALK------NK---SPYEWRNALRQLERTFLR 197 (707)
Q Consensus 134 a~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~------g~Plai~~~~~~l~------~~---~~~~w~~~l~~l~~~~~~ 197 (707)
++++|...+.. ........+....|++.++ |.|..+..+..... +. +.+.+...+.....
T Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---- 295 (412)
T 1w5s_A 220 LYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---- 295 (412)
T ss_dssp HHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----
Confidence 99999866431 0111122456788999999 99976655543221 11 23333333322100
Q ss_pred CCCccccccceeeeeeecccCChHHHHHHHHHhcccc-----ccchhhhHHhhh--c---ccccccchhHHHHHHHHHHH
Q 042869 198 SFSGTQAVAAYSTIELSYYQLEGEELRQTFLLIGYTF-----ISCVKDVIYYGM--G---LGLFQNINTLEEARDRAHTL 267 (707)
Q Consensus 198 ~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~~~fp-----~~~~~~li~~w~--~---~g~~~~~~~~~~~~~~~~~~ 267 (707)
...+...+..||.. .+.++..++.+. .+...++...+. + .|. .+. .......+
T Consensus 296 ----------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~ 358 (412)
T 1w5s_A 296 ----------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPR-----GYTQYHIY 358 (412)
T ss_dssp --------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCC-----CHHHHHHH
T ss_pred ----------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCC-----CHHHHHHH
Confidence 12344567789988 588888787642 233333332221 1 011 000 11234456
Q ss_pred HHHHhhhccccc
Q 042869 268 IDKLKNSCLLLD 279 (707)
Q Consensus 268 ~~~L~~~~ll~~ 279 (707)
++.|...+++..
T Consensus 359 l~~L~~~gli~~ 370 (412)
T 1w5s_A 359 LKHLTSLGLVDA 370 (412)
T ss_dssp HHHHHHTTSEEE
T ss_pred HHHHHhCCCEEe
Confidence 888888888754
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=7.8e-09 Score=105.05 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecC
Q 042869 341 CPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLEN 398 (707)
Q Consensus 341 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 398 (707)
+++|+.|.+.. .+..+++..|.++++|+.|++.++.+..++ ..|..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77888888877 677777777888888888888877766643 4455555555555443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=1.9e-09 Score=110.91 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=75.9
Q ss_pred CCccEEEecCCCccc--CCccccccCCCCEEEecCCCCCCc--ccc-----cCCCCCcEEEcCCCchhh-----chHHhh
Q 042869 366 TELRVLDFTQMYLLA--LPSSLGLLQNLQTLSLENCKLGDM--AII-----GDLKKLEILTLRGSNMQK-----LVEEIG 431 (707)
Q Consensus 366 ~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~--~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~ 431 (707)
++|++|++++|.+.. +..-...+.+|+.|+|++|.++.. ..+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 567777777776543 222223455677777777776551 222 235667777777776542 444556
Q ss_pred cCcCCCEEcCCCCCCCcccc----hhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccC
Q 042869 432 RLTQLRLLDLSNCSKLKVIP----AYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDE 507 (707)
Q Consensus 432 ~l~~L~~L~l~~~~~~~~~p----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 507 (707)
.+++|++|++++|. ++... ...+...++|+.|++++|.+. ..........+...++|++|++++|..
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~--------~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG--------DTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC--------HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC--------HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 67777777777754 22211 112455667777777777653 111123334555667777777777654
Q ss_pred C
Q 042869 508 K 508 (707)
Q Consensus 508 ~ 508 (707)
+
T Consensus 252 ~ 252 (372)
T 3un9_A 252 S 252 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.7e-08 Score=102.59 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=49.2
Q ss_pred ccCchhhcC--------CCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCC
Q 042869 356 RIPSNFFTG--------MTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRG 420 (707)
Q Consensus 356 ~~~~~~~~~--------l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~ 420 (707)
.+|...|.+ +++|+.|++.. .+..++ ..|..|.+|+.|++..+.+.. +..+..+.++.++....
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 677788888 99999999998 787765 458899999999999998765 35566666666666554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=3.2e-07 Score=95.23 Aligned_cols=163 Identities=14% Similarity=0.132 Sum_probs=98.5
Q ss_pred CccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCc-cccccCCCCEEEecCCCCCC--cccccCCCCCcEEEc
Q 042869 342 PQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPS-SLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTL 418 (707)
Q Consensus 342 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l 418 (707)
..++.+.+.. ....++...|.++ +|+.+.+..+ +..++. .|..+ +|+.+.+.. .+.. ...+.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3444444442 3455566666664 6777777655 555433 34443 577777765 4444 356777888888888
Q ss_pred CCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCc
Q 042869 419 RGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLT 498 (707)
Q Consensus 419 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 498 (707)
.++++..+|...-...+|+.+.+.. .+..++...+..+++|+.+.+..+-.. .....+.+ .+|+
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~-------------I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVST-------------IGQEAFRE-SGIT 251 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCE-------------ECTTTTTT-CCCS
T ss_pred CCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccC-------------cccccccc-CCcc
Confidence 8777777776554567888888864 366777666778888888887654211 11122333 4677
Q ss_pred EEEEeeccCCCCC-CChhhcccceEEEEE
Q 042869 499 SLEILIQDEKALP-RDLSFFKMLQRYRIL 526 (707)
Q Consensus 499 ~L~l~~~~~~~~p-~~l~~~~~L~~L~l~ 526 (707)
.+.+.. ....++ ..+..+++|+.+.+.
T Consensus 252 ~i~lp~-~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 252 TVKLPN-GVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp EEEEET-TCCEECTTTTTTCTTCCEEEEE
T ss_pred EEEeCC-CccEEChhHhhCCCCCCEEEeC
Confidence 777733 233332 234566677777664
No 150
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=1.7e-07 Score=97.51 Aligned_cols=215 Identities=11% Similarity=0.053 Sum_probs=125.3
Q ss_pred CCCCcHHHHHHHHHHHhhhcc----C--CCcEEEEEecCCc-CHHHHHHHHHHHhc-hhhhhcch-hhHHHHHHHHHHhc
Q 042869 1 MGGIGKTTLVKEVGRQVKENN----L--FEKVISSRVSQTP-QIKNIQGEIAEKIG-LELAEQSH-ETVRAGRLLERLKK 71 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~-~~~~~~~~-~~~~~~~~~~~l~~ 71 (707)
.+|+||||+|+.+++...... . ....+|+++.... +...+...+++++. ........ .......+.+.+..
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 132 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN 132 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 479999999999998764321 1 2346788877766 88888888888873 22111111 22334556666655
Q ss_pred CCcEEEEEeCCCCccc--cccc-ccccCCCCCCeEEEEeeCCcccc----cc-ccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 72 EPKILIILDDIWGSLD--LEAI-GIPFADNNSGCKVLLTARSQDVL----SC-KMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 72 ~kr~LlVlDdv~~~~~--~~~l-~~~l~~~~~gs~iivTtr~~~v~----~~-~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++.+|||||++.... +... ...+.....+.+||+||+..... .. .......+.+++++.++..+++...+.
T Consensus 133 -~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 133 -IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp -SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred -CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 345999999976421 1222 21221111678899999875321 10 011123899999999999999998753
Q ss_pred C-CCCCchhHHHHHHHHHHcC---Ccch-HHHHHHHHh--c----cCChhHHHHHHHHHHHhhccCCCccccccceeeee
Q 042869 144 D-CRENGELKSVAAEIVKECA---GLPI-AIVPIAKAL--K----NKSPYEWRNALRQLERTFLRSFSGTQAVAAYSTIE 212 (707)
Q Consensus 144 ~-~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~l--~----~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 212 (707)
. .....-..+....+++.++ |.|. |+..+.... + ..+.+.+..++...... .+.
T Consensus 212 ~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~---------------~~~ 276 (384)
T 2qby_B 212 YGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQE---------------RLI 276 (384)
T ss_dssp HTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHH---------------HHH
T ss_pred hhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhcc---------------hHH
Confidence 1 1111111244667777777 8886 444433332 1 23677777777665321 123
Q ss_pred eecccCChHHHHHHHHHhcc
Q 042869 213 LSYYQLEGEELRQTFLLIGY 232 (707)
Q Consensus 213 ~sy~~L~~~~lk~~fl~~~~ 232 (707)
.++..|+.. -+..+..++.
T Consensus 277 ~~~~~l~~~-~~~~l~al~~ 295 (384)
T 2qby_B 277 EAVKALPFH-YKLALRSLIE 295 (384)
T ss_dssp HHHHSSCHH-HHHHHHHHHT
T ss_pred HHHHcCCHH-HHHHHHHHHH
Confidence 345667766 3555544543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=6.9e-08 Score=98.90 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=58.8
Q ss_pred EeccCC-CCCCCCCCCCCCccceeeecc-ccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCC
Q 042869 325 ISLNNS-NISEPPQGFECPQLRFLCIGY-HASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKL 401 (707)
Q Consensus 325 l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~ 401 (707)
++..++ .+..+|.+..+++|+.|++++ |.+..+++..|.++++|++|+|++|.+..+| ..|+.|++|++|+|++|.+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 455554 555555544566666666664 6666666666666666666666666666643 3456666666666666666
Q ss_pred CC-cccccCCCCCcEEEcCCCchh
Q 042869 402 GD-MAIIGDLKKLEILTLRGSNMQ 424 (707)
Q Consensus 402 ~~-~~~i~~l~~L~~L~l~~~~l~ 424 (707)
+. ++.+.....|++|++.+|.+.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCcc
Confidence 65 333322223666666666544
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.9e-07 Score=95.54 Aligned_cols=100 Identities=20% Similarity=0.071 Sum_probs=85.8
Q ss_pred ceeeeccc-cccccCchhhcCCCCccEEEecC-CCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcC
Q 042869 345 RFLCIGYH-ASLRIPSNFFTGMTELRVLDFTQ-MYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLR 419 (707)
Q Consensus 345 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~ 419 (707)
..++++++ .+..+|. +..+++|++|+|++ |.+..+| ..|+.|.+|++|+|++|.++. +..+++|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 7888887 88999999999996 9999976 679999999999999999988 4578999999999999
Q ss_pred CCchhhchHHhhcCcCCCEEcCCCCCC
Q 042869 420 GSNMQKLVEEIGRLTQLRLLDLSNCSK 446 (707)
Q Consensus 420 ~~~l~~lp~~i~~l~~L~~L~l~~~~~ 446 (707)
+|++..+|..+.....|+.|++.+|..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCc
Confidence 999999987665555599999998654
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.56 E-value=3.9e-07 Score=88.08 Aligned_cols=104 Identities=9% Similarity=0.112 Sum_probs=71.6
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCccccc-cccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVLS-CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++.+||+||++.. ..++.+...+.....+.++|+||+...... ........+.+++++.++..+++.+.+......
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35799999999764 345555544444456788999988754321 111224678999999999999999877532211
Q ss_pred chhHHHHHHHHHHcCCcchHHHHHHHHh
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPIAKAL 176 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~~~~l 176 (707)
-..+....|++.++|.|..+..+...+
T Consensus 205 -~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 -HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp -BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123557889999999999888776544
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.53 E-value=5.9e-07 Score=85.39 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=91.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+.+++.......-...+.++.+.......+...+....... ....+++.+||+||
T Consensus 47 ~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~vliiDe 110 (226)
T 2chg_A 47 PGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA----------------PIGGAPFKIIFLDE 110 (226)
T ss_dssp TTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC----------------CSTTCSCEEEEEET
T ss_pred CCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc----------------CCCccCceEEEEeC
Confidence 69999999999998754331112344455444333332222111110000 01124689999999
Q ss_pred CCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 042869 82 IWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEI 158 (707)
Q Consensus 82 v~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i 158 (707)
++.. ..++.+...+.....+.++|+||+..... .........+.+.+++.++..+++.+.+...... -..+....+
T Consensus 111 ~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l 189 (226)
T 2chg_A 111 ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEAL 189 (226)
T ss_dssp GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence 9865 23344443333345578899998875432 1111223478999999999999998877421111 123557788
Q ss_pred HHHcCCcchHHHHHHHH
Q 042869 159 VKECAGLPIAIVPIAKA 175 (707)
Q Consensus 159 ~~~c~g~Plai~~~~~~ 175 (707)
++.++|.|..+..+...
T Consensus 190 ~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 190 IYISGGDFRKAINALQG 206 (226)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 89999999865554443
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.52 E-value=1.5e-06 Score=90.42 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCC----------------
Q 042869 338 GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCK---------------- 400 (707)
Q Consensus 338 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~---------------- 400 (707)
+..|.+|+.+.+.. .+..+....|.++++|+.+++..+ +..++ ..+..+.+|+.+.+..+-
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 33566677776653 355566666777777777777543 33332 234455555544443210
Q ss_pred -------CCCcccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccC
Q 042869 401 -------LGDMAIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGE 468 (707)
Q Consensus 401 -------~~~~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 468 (707)
......+.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+.. .+..++...+.++..|+.+.+..
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCC
Confidence 001123445566666666543 22232 2344556666666543 24444444455555565555443
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=1.7e-08 Score=103.74 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=110.0
Q ss_pred CCCccEEEecCCCcccC-Ccc----cc-ccCCCCEEEecCCCCCC--ccc-ccCCCCCcEEEcCCCchhhc-----hHHh
Q 042869 365 MTELRVLDFTQMYLLAL-PSS----LG-LLQNLQTLSLENCKLGD--MAI-IGDLKKLEILTLRGSNMQKL-----VEEI 430 (707)
Q Consensus 365 l~~L~~L~l~~~~~~~l-p~~----i~-~l~~L~~L~l~~~~~~~--~~~-i~~l~~L~~L~l~~~~l~~l-----p~~i 430 (707)
++.|+.|++++|.+... ... +. ...+|++|+|++|.++. ... ...+++|++|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 56788999999988652 122 22 23699999999999876 223 33567899999999988633 2233
Q ss_pred -hcCcCCCEEcCCCCCCCcc-----cchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEee
Q 042869 431 -GRLTQLRLLDLSNCSKLKV-----IPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILI 504 (707)
Q Consensus 431 -~~l~~L~~L~l~~~~~~~~-----~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 504 (707)
...++|++|++++|.. +. ++.. +..+++|++|++++|.+. ..........+...++|++|++++
T Consensus 151 ~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~--------~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPL-TAAGVAVLMEG-LAGNTSVTHLSLLHTGLG--------DEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HSTTCCCCEEECCSSCC-HHHHHHHHHHH-HHTCSSCCEEECTTSSCH--------HHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HhcCCccceeeCCCCCC-ChHHHHHHHHH-HhcCCCcCEEeCCCCCCC--------cHHHHHHHHHHhcCCCcCeEECCC
Confidence 2468999999999753 33 2222 577899999999999874 111233456678889999999999
Q ss_pred ccCCC-----CCCChhhcccceEEEEEecc
Q 042869 505 QDEKA-----LPRDLSFFKMLQRYRILIGY 529 (707)
Q Consensus 505 ~~~~~-----~p~~l~~~~~L~~L~l~~~~ 529 (707)
|..+. +...+...++|+.|+++.|.
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 98653 33334566889999987654
No 157
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.47 E-value=5.3e-07 Score=93.78 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=110.7
Q ss_pred CCCCcHHHHHHHHHHHhhhccC-CCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcch-hhHHHHHHHHHHhc-CCcEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNL-FEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSH-ETVRAGRLLERLKK-EPKILI 77 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~-~kr~Ll 77 (707)
.+|+||||||+.+++....... -..++|+++....+...+...++.+++........ ..+....+.+.+.. +++.+|
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 132 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVI 132 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEE
Confidence 4799999999999987654311 12467788776667788888888877654322211 22234445555543 358999
Q ss_pred EEeCCCCcc------cccccccccCC-CCCCeEEEEeeCCccccccc-----cC-CcceEEeecCChHHHHHHHHhhhcC
Q 042869 78 ILDDIWGSL------DLEAIGIPFAD-NNSGCKVLLTARSQDVLSCK-----MD-CQQNFFVDVLNEKEAWSLFKKMTGD 144 (707)
Q Consensus 78 VlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~-----~~-~~~~~~l~~L~~~~a~~Lf~~~~~~ 144 (707)
|+|+++... .+..+...+.. ...+..+|+||+........ .. ....+.+++++.++..+++.+.+..
T Consensus 133 ilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 133 VLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp EEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 999997532 12222211111 23356778888876432100 01 1147999999999999999886531
Q ss_pred -CCCCchhHHHHHHHHHHcC---CcchHHHHH-HHHhc-----c---CChhHHHHHHHHH
Q 042869 145 -CRENGELKSVAAEIVKECA---GLPIAIVPI-AKALK-----N---KSPYEWRNALRQL 191 (707)
Q Consensus 145 -~~~~~~~~~~~~~i~~~c~---g~Plai~~~-~~~l~-----~---~~~~~w~~~l~~l 191 (707)
........+....+++.++ |.|..+..+ ..... + .+.+.++.++...
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 213 AFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 1111222445666777776 998844333 22221 1 2556666665554
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=2.8e-07 Score=93.87 Aligned_cols=137 Identities=21% Similarity=0.269 Sum_probs=74.5
Q ss_pred hhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC--ccccc--CCCCCcEEEcCCC--c------hhhch
Q 042869 360 NFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD--MAIIG--DLKKLEILTLRGS--N------MQKLV 427 (707)
Q Consensus 360 ~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~--~l~~L~~L~l~~~--~------l~~lp 427 (707)
.++..+++|+.|+++++....++. + .+++|+.|++..|.+.. ...++ .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345667788888887763234444 3 36778888887777654 22333 6777777777421 1 11111
Q ss_pred HHh--hcCcCCCEEcCCCCCCCcccchhhh--hCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEe
Q 042869 428 EEI--GRLTQLRLLDLSNCSKLKVIPAYVI--SSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEIL 503 (707)
Q Consensus 428 ~~i--~~l~~L~~L~l~~~~~~~~~p~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 503 (707)
..+ ..+++|++|++.+|......+..+. ..+++|++|+++.|.+. ..........+..+++|+.|+++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~--------d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT--------DEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB--------HHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC--------hHHHHHHHhhcccCCcceEEECC
Confidence 111 2467777777766554332222211 24667777777666543 00111222334556677777776
Q ss_pred ecc
Q 042869 504 IQD 506 (707)
Q Consensus 504 ~~~ 506 (707)
.|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 654
No 159
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.42 E-value=9.2e-07 Score=91.99 Aligned_cols=215 Identities=15% Similarity=0.078 Sum_probs=123.1
Q ss_pred CCCCcHHHHHHHHHHHhhhcc---C-CCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcch-hhHHHHHHHHHHh-cCCc
Q 042869 1 MGGIGKTTLVKEVGRQVKENN---L-FEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSH-ETVRAGRLLERLK-KEPK 74 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~-~~kr 74 (707)
.+|+||||+|+.+++...... . -...+|+++....+...+...++++++........ ..+....+.+.+. .+++
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 131 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGI 131 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCe
Confidence 479999999999998764321 1 12367888888888899999999998764333221 2233455555554 3468
Q ss_pred EEEEEeCCCCccc----ccccc---cccCCC--CCCeEEEEeeCCccccc----c-ccCC-cceEEeecCChHHHHHHHH
Q 042869 75 ILIILDDIWGSLD----LEAIG---IPFADN--NSGCKVLLTARSQDVLS----C-KMDC-QQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 75 ~LlVlDdv~~~~~----~~~l~---~~l~~~--~~gs~iivTtr~~~v~~----~-~~~~-~~~~~l~~L~~~~a~~Lf~ 139 (707)
.+||||+++.... .+.+. ...... ..+..+|.||+...... . .... ...+.+++++.++..+++.
T Consensus 132 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 132 YIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp EEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHH
T ss_pred EEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 9999999985432 12221 111111 34567788887653210 0 0011 1478899999999999998
Q ss_pred hhhcC-CCCCchhHHHHHHHHHHcC---Ccch-HHHHHHHHhc-----c---CChhHHHHHHHHHHHhhccCCCcccccc
Q 042869 140 KMTGD-CRENGELKSVAAEIVKECA---GLPI-AIVPIAKALK-----N---KSPYEWRNALRQLERTFLRSFSGTQAVA 206 (707)
Q Consensus 140 ~~~~~-~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~l~-----~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~ 206 (707)
+.+.. ........+....+++.++ |.|- ++..+..... + .+.+.+..++......
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~------------ 279 (387)
T 2v1u_A 212 TRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD------------ 279 (387)
T ss_dssp HHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH------------
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc------------
Confidence 87531 0011111234566777777 9994 3333322221 1 2566777766664322
Q ss_pred ceeeeeeecccCChHHHHHHHHHhc
Q 042869 207 AYSTIELSYYQLEGEELRQTFLLIG 231 (707)
Q Consensus 207 ~~~~l~~sy~~L~~~~lk~~fl~~~ 231 (707)
.+.-++..++.+ .+..+..++
T Consensus 280 ---~~~~~~~~l~~~-~~~~l~a~~ 300 (387)
T 2v1u_A 280 ---RVSEVVRTLPLH-AKLVLLSIM 300 (387)
T ss_dssp ---HHHHHHHSSCHH-HHHHHHHHH
T ss_pred ---hHHHHHHcCCHH-HHHHHHHHH
Confidence 122345667776 355555444
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=1.8e-06 Score=89.55 Aligned_cols=170 Identities=15% Similarity=0.119 Sum_probs=82.9
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCC
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRG 420 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~ 420 (707)
+|+.+.+.. ....+....|.++++|+.+++..+.+..+|...-.+.+|+.+.+..+ ++. ...+.++.+|+.+.+..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 455555543 34445555556666666666666555555544333455666665532 333 23455566666666654
Q ss_pred CchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEE
Q 042869 421 SNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSL 500 (707)
Q Consensus 421 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 500 (707)
+ +..++...-.-.+|+.+.+.. .+..++...+..+++|+.+.+..+....... .......+.+|++|+.+
T Consensus 236 ~-l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~-------~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 236 N-VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPE-------AMIHPYCLEGCPKLARF 305 (401)
T ss_dssp T-CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTT-------CEECTTTTTTCTTCCEE
T ss_pred C-ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcc-------cEECHHHhhCCccCCeE
Confidence 2 343332221125566666532 3445554456666666666665543320000 01112345556666666
Q ss_pred EEeeccCCCCCC-ChhhcccceEEEE
Q 042869 501 EILIQDEKALPR-DLSFFKMLQRYRI 525 (707)
Q Consensus 501 ~l~~~~~~~~p~-~l~~~~~L~~L~l 525 (707)
.+.. ....++. .+..+++|+.+.+
T Consensus 306 ~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 306 EIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 6552 2333332 2344556666655
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=2.3e-07 Score=82.49 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=60.8
Q ss_pred cccceEeecCCCCcchhhhhcccCcccccccccceeeccCccccccccccccccc--cCCCcCEEEeccCCCcccccchh
Q 042869 564 KGIEDLTLDGLPDIKNILCELGREARTTAFSLLESLFLRDLRNLEEICRGPLTAE--SFCKLKTIEVERCDKLKKVFPLV 641 (707)
Q Consensus 564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~i~~C~~L~~l~~~~ 641 (707)
.+|+.|++++|. ++..... .+..+++|+.|++++|..+++.....+... ..++|++|+|++|+++++-.-.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~-----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~- 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD-----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII- 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG-----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-
T ss_pred ceEeEEeCcCCC-ccHHHHH-----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-
Confidence 468888888886 5554432 334588888888888877766421111110 1246888888888888775332
Q ss_pred hhccCCCCcEEEEccCcchhhh
Q 042869 642 IGRGLQQLQSVKVSSCQNMEVI 663 (707)
Q Consensus 642 ~~~~l~~L~~L~i~~C~~l~~i 663 (707)
.+..+++|++|+|++|+.+++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCCH
T ss_pred HHhcCCCCCEEECCCCCCCCch
Confidence 3456788888888888877653
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=3.2e-07 Score=81.60 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=61.2
Q ss_pred ccceeeccCccccccccccccccccCCCcCEEEeccCCCcccccchhhhcc----CCCCcEEEEccCcchhhhhcccccc
Q 042869 595 LLESLFLRDLRNLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLVIGRG----LQQLQSVKVSSCQNMEVIFAAERGD 670 (707)
Q Consensus 595 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~----l~~L~~L~i~~C~~l~~i~~~~~~~ 670 (707)
+|+.|++++|. +++... .....+++|++|++.+|..+++-.-. .+.. .++|++|+|++|+++.+-....
T Consensus 62 ~L~~LDLs~~~-Itd~GL--~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--- 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF--DHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIA--- 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGG--GGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHH---
T ss_pred eEeEEeCcCCC-ccHHHH--HHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHH---
Confidence 68888888885 554321 22356888999999999888774222 1222 2478899999998887644321
Q ss_pred cccCCCCCcceeecccceeeccCcccccc
Q 042869 671 ESSNNNGTEVIEVTQLRTLELRSLAQLTS 699 (707)
Q Consensus 671 ~~~~~~~~~~~~l~~L~~L~l~~cp~L~~ 699 (707)
+..+|+|++|+|++||+++.
T Consensus 135 ---------L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 ---------LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ---------GGGCTTCCEEEEESCTTCCC
T ss_pred ---------HhcCCCCCEEECCCCCCCCc
Confidence 23678899999999988774
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.20 E-value=8.6e-06 Score=84.68 Aligned_cols=170 Identities=14% Similarity=0.144 Sum_probs=104.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcc-hhhHHHHHHHHHHh-cCCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQS-HETVRAGRLLERLK-KEPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~-~~kr~LlVl 79 (707)
+|+||||+|+.+++...... -..+++++++...+...+...++..++....... ........+.+.+. .+++.+||+
T Consensus 53 ~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlil 131 (389)
T 1fnn_A 53 PGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVL 131 (389)
T ss_dssp TTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 69999999999998765431 1246677877777888999999988865432221 12223334444443 245899999
Q ss_pred eCCCCc--ccccccccccCCC-C---CCeEEEEeeCCcccccccc------CCcceEEeecCChHHHHHHHHhhhcC-CC
Q 042869 80 DDIWGS--LDLEAIGIPFADN-N---SGCKVLLTARSQDVLSCKM------DCQQNFFVDVLNEKEAWSLFKKMTGD-CR 146 (707)
Q Consensus 80 Ddv~~~--~~~~~l~~~l~~~-~---~gs~iivTtr~~~v~~~~~------~~~~~~~l~~L~~~~a~~Lf~~~~~~-~~ 146 (707)
|+++.. .....+...+... . .+..||++|+......... -....+.+.+++.++..+++...+.. ..
T Consensus 132 DE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~ 211 (389)
T 1fnn_A 132 DDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA 211 (389)
T ss_dssp ETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC
T ss_pred ECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC
Confidence 999765 2233332222111 1 3677888888764321000 01136999999999999999887642 01
Q ss_pred CCchhHHHHHHHHHHc---------CCcchHHHHH
Q 042869 147 ENGELKSVAAEIVKEC---------AGLPIAIVPI 172 (707)
Q Consensus 147 ~~~~~~~~~~~i~~~c---------~g~Plai~~~ 172 (707)
...-..+....+++.+ +|.|..+..+
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 1122245677888888 7887544443
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=1.5e-05 Score=82.83 Aligned_cols=111 Identities=10% Similarity=0.177 Sum_probs=67.8
Q ss_pred cccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCCchhhch--
Q 042869 353 ASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGSNMQKLV-- 427 (707)
Q Consensus 353 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-- 427 (707)
....+....|.++++|+.+.+..+ +..++ ..|.+|.+|+.+++..+ ++. ...+..+.+|+.+.+..+ +..+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 355677788999999999999754 66664 45888999999999754 333 244556666666655432 11111
Q ss_pred ---------------------HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccC
Q 042869 428 ---------------------EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGE 468 (707)
Q Consensus 428 ---------------------~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 468 (707)
..+.++.+|+.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 135 aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred eeecccccccccCccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 1234455666666543 22344444455566666555543
No 165
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=6.8e-06 Score=82.98 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=90.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.+++...........++++.+....... .+++++.+..... .+..+++.+||+||
T Consensus 51 ~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~--------------~~~~~~~~viiiDe 115 (323)
T 1sxj_B 51 PGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKHFAQKKL--------------HLPPGKHKIVILDE 115 (323)
T ss_dssp TTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHHHHBCC--------------CCCTTCCEEEEEES
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHHHHhccc--------------cCCCCCceEEEEEC
Confidence 79999999999998754321112244554444333222 1222221110000 01034589999999
Q ss_pred CCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 042869 82 IWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEI 158 (707)
Q Consensus 82 v~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i 158 (707)
++.. ..++.+...+.....+.++|+||+...-. .........+.+.+++.++..+++.+.+...... -..+....+
T Consensus 116 ~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l 194 (323)
T 1sxj_B 116 ADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAI 194 (323)
T ss_dssp GGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence 9864 33444444443334578888888774432 1111223489999999999999998876421111 123557889
Q ss_pred HHHcCCcchH-HHHHHH
Q 042869 159 VKECAGLPIA-IVPIAK 174 (707)
Q Consensus 159 ~~~c~g~Pla-i~~~~~ 174 (707)
++.++|.|.. +..+..
T Consensus 195 ~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 195 IFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 9999999954 444433
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=5.2e-06 Score=84.43 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=100.9
Q ss_pred hhCCCCCcEEEccCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccCCCCCCChhhcccceEEEEEecceeccC
Q 042869 455 ISSLSRLEELYIGESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKALPRDLSFFKMLQRYRILIGYWWSVG 534 (707)
Q Consensus 455 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~l~~~~~L~~L~l~~~~~~~~~ 534 (707)
+.++++|+.|.+......-... ...........+..+++|++|.++++....++. + .+++|+.|.+..+....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~i---s~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~-- 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEI---SWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPD-- 207 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCG---GGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCH--
T ss_pred hhhcchhhheeecCcchhhccc---ccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCCh--
Confidence 5678999999997653210000 000112344667888999999999875445554 3 37889999886443110
Q ss_pred CCCCccceEEeeecCCcceecchhHH--HHhcccceEeecCCC-------CcchhhhhcccCcccccccccceeeccCcc
Q 042869 535 PSDGISRMFRLKLTNGANICLNEGHI--MQLKGIEDLTLDGLP-------DIKNILCELGREARTTAFSLLESLFLRDLR 605 (707)
Q Consensus 535 ~~~~~~~~~~L~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-------~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 605 (707)
...... ..+|+|+.|+|.... .++.+...+ ....||+|+.|.+.+|.
T Consensus 208 --------------------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l----~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 208 --------------------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF----SKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp --------------------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS----CTTTCTTCCEEEEESCT
T ss_pred --------------------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH----hcCCCCCcCEEeCCCCC
Confidence 000011 147899999885311 122222111 12358999999998865
Q ss_pred ccccccccccccccCCCcCEEEeccCCCcccccchh---hhccCCCCcEEEEccCc
Q 042869 606 NLEEICRGPLTAESFCKLKTIEVERCDKLKKVFPLV---IGRGLQQLQSVKVSSCQ 658 (707)
Q Consensus 606 ~l~~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~---~~~~l~~L~~L~i~~C~ 658 (707)
--............+|+|++|+++. +.++...... .++++++|+.|++++|.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3322111112234689999999965 5777642211 23568999999999884
No 167
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=5.6e-06 Score=79.65 Aligned_cols=79 Identities=28% Similarity=0.302 Sum_probs=56.1
Q ss_pred cCCCCccEEEecCCCcccCC---ccccccCCCCEEEecCCCCCCcccccCCC--CCcEEEcCCCchhh-ch-------HH
Q 042869 363 TGMTELRVLDFTQMYLLALP---SSLGLLQNLQTLSLENCKLGDMAIIGDLK--KLEILTLRGSNMQK-LV-------EE 429 (707)
Q Consensus 363 ~~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~~~i~~l~--~L~~L~l~~~~l~~-lp-------~~ 429 (707)
.++++|+.|+|++|.+..++ ..++.+++|++|+|++|.++....+..+. +|++|+|++|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 56788888888888887643 55678888888888888887765555555 78888888877653 32 23
Q ss_pred hhcCcCCCEEcC
Q 042869 430 IGRLTQLRLLDL 441 (707)
Q Consensus 430 i~~l~~L~~L~l 441 (707)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 456777777763
No 168
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=1e-05 Score=73.90 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=65.6
Q ss_pred hhcCCCCccEEEecCC-Cccc-----CCccccccCCCCEEEecCCCCCCc------ccccCCCCCcEEEcCCCchhh---
Q 042869 361 FFTGMTELRVLDFTQM-YLLA-----LPSSLGLLQNLQTLSLENCKLGDM------AIIGDLKKLEILTLRGSNMQK--- 425 (707)
Q Consensus 361 ~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~------~~i~~l~~L~~L~l~~~~l~~--- 425 (707)
.+...+.|++|++++| .+.. +...+...++|++|+|++|.+... ..+...++|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4556777777777777 6543 344455667777777777776652 234455677777777776542
Q ss_pred --chHHhhcCcCCCEEcC--CCCCCCcccch---hhhhCCCCCcEEEccCCCc
Q 042869 426 --LVEEIGRLTQLRLLDL--SNCSKLKVIPA---YVISSLSRLEELYIGESPI 471 (707)
Q Consensus 426 --lp~~i~~l~~L~~L~l--~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~ 471 (707)
+...+...++|++|++ ++|.....-.. ..+...++|++|+++.|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4455566667777777 54432221111 1234446677777766654
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=0.00021 Score=74.19 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=64.5
Q ss_pred ccceeeeccccccccCchhhcCCCCccEEEecCCC---cccCC-ccccccCCCCEEEecCCCCCC--cccccCCCCCcEE
Q 042869 343 QLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMY---LLALP-SSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEIL 416 (707)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L 416 (707)
.|+.+.+..+ ...+....|.++.+|+.+.+..+. +..+. ..|..+.+|+.+.+..+ ++. ...+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4666666532 555666667777777777776543 33332 33555666665554432 222 2345566777777
Q ss_pred EcCCCchhhch-HHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccC
Q 042869 417 TLRGSNMQKLV-EEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGE 468 (707)
Q Consensus 417 ~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 468 (707)
.+..+ +..++ ..+..+.+|+.+.+.. .+..+....+. ..+|+.+.+..
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCCCSEEEECT
T ss_pred cccce-eeeecccceecccccccccccc--eeeEecccccc-ccceeEEEECC
Confidence 77543 23332 2345566777766654 24444444343 34566666544
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=0.0006 Score=70.64 Aligned_cols=109 Identities=9% Similarity=0.154 Sum_probs=55.4
Q ss_pred ccCchhhcCCC-CccEEEecCCCcccC-CccccccCCCCEEEecCCC---CCC--cccccCCCCCcEEEcCCCchhhchH
Q 042869 356 RIPSNFFTGMT-ELRVLDFTQMYLLAL-PSSLGLLQNLQTLSLENCK---LGD--MAIIGDLKKLEILTLRGSNMQKLVE 428 (707)
Q Consensus 356 ~~~~~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~---~~~--~~~i~~l~~L~~L~l~~~~l~~lp~ 428 (707)
.+....|.+++ .|+.+.+..+ ++.+ ...|.+|.+|+.+.+..+. ++. ...+..+.+|+.+.+..+ ++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 44455555553 4666666543 3333 2345666666666665543 222 133445555555554432 333332
Q ss_pred -HhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccC
Q 042869 429 -EIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGE 468 (707)
Q Consensus 429 -~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 468 (707)
.+..+.+|+.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhcccccccccc--eeeeecccceecccccccccccc
Confidence 234566666666643 23444444455666666666544
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=2.8e-05 Score=78.56 Aligned_cols=104 Identities=12% Similarity=0.015 Sum_probs=66.9
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCccccc-cccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVLS-CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++.++|+||++.. ..++.+...+.....+.++|+||+...... ........+.+.+++.++..+++.+.+.....
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~- 187 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL- 187 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-
Confidence 46789999999864 334444444433345788998887754321 00111247899999999999999877643221
Q ss_pred chhHHHHHHHHHHcCCcchHHHHHHHHh
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPIAKAL 176 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~~~~l 176 (707)
.-..+....+++.++|.|..+..+....
T Consensus 188 ~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 188 ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1224567888999999998655544433
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=2.2e-05 Score=71.72 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=84.5
Q ss_pred CccccccCCCCEEEecCC-CCCCc------ccccCCCCCcEEEcCCCchh-----hchHHhhcCcCCCEEcCCCCCCCcc
Q 042869 382 PSSLGLLQNLQTLSLENC-KLGDM------AIIGDLKKLEILTLRGSNMQ-----KLVEEIGRLTQLRLLDLSNCSKLKV 449 (707)
Q Consensus 382 p~~i~~l~~L~~L~l~~~-~~~~~------~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~ 449 (707)
...+...++|++|+|++| .+... ..+...++|++|+|++|.+. .+...+...++|++|++++|.....
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344667889999999999 87762 45667789999999999775 3456677778999999998654332
Q ss_pred ----cchhhhhCCCCCcEEEc--cCCCcccccccccccccccccHHHhhcCCCCcEEEEeeccC
Q 042869 450 ----IPAYVISSLSRLEELYI--GESPIEWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDE 507 (707)
Q Consensus 450 ----~p~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 507 (707)
+.. .+...++|++|++ .+|.+. ..........+...++|++|++++|..
T Consensus 109 g~~~l~~-~L~~n~~L~~L~L~~~~N~i~--------~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVE-ALQSNTSLIELRIDNQSQPLG--------NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHH-GGGGCSSCCEEECCCCSSCCC--------HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHH-HHHhCCCceEEEecCCCCCCC--------HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 222 2566788999999 777764 112233456677778899999987764
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.77 E-value=2.8e-05 Score=78.48 Aligned_cols=75 Identities=7% Similarity=-0.055 Sum_probs=49.1
Q ss_pred CeEEEEeeCCcccccc--ccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHHHHh
Q 042869 101 GCKVLLTARSQDVLSC--KMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIAKAL 176 (707)
Q Consensus 101 gs~iivTtr~~~v~~~--~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 176 (707)
+.++|.||........ .......+.+.+++.++..+++.+.+..... .-..+....+++.++|.|-.+..+...+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3466666665432211 1112357899999999999998887753221 1224567889999999998887766554
No 174
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00033 Score=69.09 Aligned_cols=141 Identities=11% Similarity=0.039 Sum_probs=82.0
Q ss_pred CCCcHHHHHHHHHHHhhhccC---C-C-cEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHH--hcCCc
Q 042869 2 GGIGKTTLVKEVGRQVKENNL---F-E-KVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERL--KKEPK 74 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~kr 74 (707)
+|+|||++|++|++....... . + ..+.+++....+...+...|++++.............+...+..+ ..++.
T Consensus 54 PGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~ 133 (318)
T 3te6_A 54 DDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRK 133 (318)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCc
Confidence 799999999999998754211 1 1 255677777778889999999999654222221233445555543 23468
Q ss_pred EEEEEeCCCCccccccccccc--CCCCC-CeEEEEeeCCcccccc--------ccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 75 ILIILDDIWGSLDLEAIGIPF--ADNNS-GCKVLLTARSQDVLSC--------KMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 75 ~LlVlDdv~~~~~~~~l~~~l--~~~~~-gs~iivTtr~~~v~~~--------~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
+++|||+++...+-+.+...+ +.... ...||.++.+.+.... .+ ....+.+.+++.++-.+++.+++.
T Consensus 134 ~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 134 TLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp EEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 999999998654222221111 11111 2233334444322110 11 124688999999999999987763
No 175
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.0006 Score=70.29 Aligned_cols=125 Identities=8% Similarity=0.055 Sum_probs=66.4
Q ss_pred CCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCC-ccccccCCCCEEEecCCCCCC-cccccCCCCCcE
Q 042869 338 GFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALP-SSLGLLQNLQTLSLENCKLGD-MAIIGDLKKLEI 415 (707)
Q Consensus 338 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~ 415 (707)
.....+|+.+.+.. .+..+..+.|.++.+|+.+++..+ +..++ ..|..+ .|..+.+..+ +.. ........+|+.
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 33456677777753 356677777888888888888654 44443 334444 4666655432 222 111112246777
Q ss_pred EEcCCCchhhchHHhhcCcCCCEEcCCCCCCCcccchhhhhCCCCCcEEEccCC
Q 042869 416 LTLRGSNMQKLVEEIGRLTQLRLLDLSNCSKLKVIPAYVISSLSRLEELYIGES 469 (707)
Q Consensus 416 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 469 (707)
+.+..+ +..+....-.-.+|+.+.+.. .+..+....+....+++.+.+...
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred ccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 777653 333332222223555554433 233444334556667776666544
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.62 E-value=0.00045 Score=67.47 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=85.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++.... . .+.++.+... ++.. ..........+.+.....+..+|++|+
T Consensus 73 ~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------------~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDE 132 (272)
T 1d2n_A 73 PHSGKTALAAKIAEESNF----P-FIKICSPDKM------------IGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDD 132 (272)
T ss_dssp TTSSHHHHHHHHHHHHTC----S-EEEEECGGGC------------TTCC---HHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred CCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh------------cCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 699999999999987422 2 1222222100 0100 000111223333333334679999999
Q ss_pred CCCc-----------cc-ccccccccC---CCCCCeEEEEeeCCcccccc---ccCCcceEEeecCCh-HHHHHHHHhhh
Q 042869 82 IWGS-----------LD-LEAIGIPFA---DNNSGCKVLLTARSQDVLSC---KMDCQQNFFVDVLNE-KEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~-----------~~-~~~l~~~l~---~~~~gs~iivTtr~~~v~~~---~~~~~~~~~l~~L~~-~~a~~Lf~~~~ 142 (707)
++.. .. .+.+...+. +......||.||........ ...-...+.+++++. ++..+++.+..
T Consensus 133 id~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~ 212 (272)
T 1d2n_A 133 IERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG 212 (272)
T ss_dssp HHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT
T ss_pred hhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC
Confidence 8642 00 111211111 12233456666766533211 111145688888888 55555555432
Q ss_pred cCCCCCchhHHHHHHHHHHcCC------cchHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 042869 143 GDCRENGELKSVAAEIVKECAG------LPIAIVPIAKALKNKSPYEWRNALRQLERTF 195 (707)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~c~g------~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~ 195 (707)
. . ..+....+++.+.| +.-++..+-..........++++++.+....
T Consensus 213 -~-~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 213 -N-F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp -C-S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred -C-C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 1 1 13446778888887 3444444444333345567788877765544
No 177
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.59 E-value=0.00034 Score=70.18 Aligned_cols=101 Identities=9% Similarity=0.018 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++.++|+|+++.. ...+.+...+.....+.++|+||....-. .........+.+.+++.++..+++.+.+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999754 33445554444444577888888765422 1111223478999999999999988776432221
Q ss_pred chhHHHHHHHHHHcCCcchHHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPIA 173 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~~ 173 (707)
-..+....+++.++|.+..+....
T Consensus 181 -i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 181 -ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp -BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123457788889999987654443
No 178
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=0.0001 Score=70.86 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=49.7
Q ss_pred cccCCCCEEEecCCCCCCcc----cccCCCCCcEEEcCCCchhhchHHhhcCc--CCCEEcCCCCCCCcccch------h
Q 042869 386 GLLQNLQTLSLENCKLGDMA----IIGDLKKLEILTLRGSNMQKLVEEIGRLT--QLRLLDLSNCSKLKVIPA------Y 453 (707)
Q Consensus 386 ~~l~~L~~L~l~~~~~~~~~----~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------~ 453 (707)
.++++|+.|+|++|.++... .+..+++|++|+|++|.+..+. .+..+. +|+.|++.+|...+.+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45677888888888877633 3346777777777777766552 344444 777777777665544441 2
Q ss_pred hhhCCCCCcEEE
Q 042869 454 VISSLSRLEELY 465 (707)
Q Consensus 454 ~~~~l~~L~~L~ 465 (707)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345566666654
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.46 E-value=0.0005 Score=70.70 Aligned_cols=102 Identities=9% Similarity=0.114 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++.++|+||++.. ..++.+...+.....+..+|++|....-. .........+++.+++.++..+++.+.+......
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45789999999754 33444444443334467788787754322 1111223678999999999999998766321111
Q ss_pred chhHHHHHHHHHHcCCcchHHHHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVPIAK 174 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~~~~ 174 (707)
-..+....+++.++|.|..+..+..
T Consensus 198 -~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 198 -HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp -BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1234577899999999987766543
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.32 E-value=0.0036 Score=60.56 Aligned_cols=150 Identities=17% Similarity=0.257 Sum_probs=78.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... .+.+..+.-.+. .... .......+.+........+|++|+
T Consensus 48 ~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~----------~~~~------~~~~~~~~~~~a~~~~~~vl~iDe 106 (262)
T 2qz4_A 48 PGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV----------IGGL------GAARVRSLFKEARARAPCIVYIDE 106 (262)
T ss_dssp TTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS----------STTH------HHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh----------ccCh------hHHHHHHHHHHHHhcCCeEEEEeC
Confidence 6999999999999865321 233443322110 0000 111223334444444579999999
Q ss_pred CCCcc-------------c----ccccccccCC--CCCCeEEEEeeCCccccccc-c---CCcceEEeecCChHHHHHHH
Q 042869 82 IWGSL-------------D----LEAIGIPFAD--NNSGCKVLLTARSQDVLSCK-M---DCQQNFFVDVLNEKEAWSLF 138 (707)
Q Consensus 82 v~~~~-------------~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~a~~Lf 138 (707)
++... . ...+...+.. ...+..||.||......... . .....+.++..+.++-.+++
T Consensus 107 id~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il 186 (262)
T 2qz4_A 107 IDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIF 186 (262)
T ss_dssp C-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHH
T ss_pred cchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHH
Confidence 97541 1 1112111111 12345666666554422111 1 22357789999999999999
Q ss_pred HhhhcCCCCCchhHHHHHHHHHHcCCcch-HHHHH
Q 042869 139 KKMTGDCRENGELKSVAAEIVKECAGLPI-AIVPI 172 (707)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 172 (707)
...+...............+++.+.|.+- .+..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 187 EQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp HHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 88775322222222234778888888754 44443
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.26 E-value=0.00023 Score=68.14 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.+++..... ...+.|++++...+. + . ...+.+ .+..+||+||
T Consensus 61 ~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~----------~----~----------~~~~~~--~~~~vliiDe 112 (242)
T 3bos_A 61 VKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI----------S----T----------ALLEGL--EQFDLICIDD 112 (242)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS----------C----G----------GGGTTG--GGSSEEEEET
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH----------H----H----------HHHHhc--cCCCEEEEec
Confidence 6999999999999876554 334566665432110 0 0 000111 2357899999
Q ss_pred CCCccc----ccccccccCC-CCCC-eEEEEeeCCcccc-----c---cccCCcceEEeecCChHHHHHHHHhhhcCCCC
Q 042869 82 IWGSLD----LEAIGIPFAD-NNSG-CKVLLTARSQDVL-----S---CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRE 147 (707)
Q Consensus 82 v~~~~~----~~~l~~~l~~-~~~g-s~iivTtr~~~v~-----~---~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 147 (707)
++.... .+.+...+.. ...+ .++|+||+...-. . ........+++.+++.++..+++.+.+.....
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~ 192 (242)
T 3bos_A 113 VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL 192 (242)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 975421 1222221110 0112 2578887753210 0 00011267899999999999999887642111
Q ss_pred CchhHHHHHHHHHHcCCcchHHHHH
Q 042869 148 NGELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 148 ~~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
.-..+....+++.++|.+-.+..+
T Consensus 193 -~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 193 -QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp -CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred -CCCHHHHHHHHHHccCCHHHHHHH
Confidence 122456778888999987665544
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.19 E-value=0.0022 Score=63.05 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=77.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... .+.+..+.-.. .. ..........+.......+..+|+||+
T Consensus 60 ~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDE 118 (285)
T 3h4m_A 60 PGTGKTLLAKAVATETNAT-----FIRVVGSELVK--------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDE 118 (285)
T ss_dssp SSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC--------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCcHHHHHHHHHHHhCCC-----EEEEehHHHHH--------------hc--cchHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 7999999999998875332 22232221110 00 011122233444444445678999999
Q ss_pred CCCcc----------------cccccccccC--CCCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL----------------DLEAIGIPFA--DNNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... .+..+...+. ....+..||.||......... ......+.++..+.++..+++.
T Consensus 119 id~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~ 198 (285)
T 3h4m_A 119 IDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILK 198 (285)
T ss_dssp THHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred HHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHH
Confidence 96420 1111111111 122356677777665433110 1223478899999999999998
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCC-cchHHHH
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAG-LPIAIVP 171 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~ 171 (707)
..+.......+ .....+++...| .|-.+..
T Consensus 199 ~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 199 IHTRKMNLAED--VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp HHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHH
T ss_pred HHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHH
Confidence 87753221111 014566777776 4434443
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.15 E-value=0.0025 Score=64.10 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=61.2
Q ss_pred CCcEEEEEeCCCCc--ccccccccccCCCCCCeEEEEeeCCcc-ccccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 72 EPKILIILDDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 72 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+++-++|+|+++.. +..+.+...+-....+..+|++|.+.+ +...-......+.+.+++.++..+.+.+.. ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~- 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM- 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC-
Confidence 35789999999854 233444444433344677888887754 222111223578999999999999888765 11
Q ss_pred chhHHHHHHHHHHcCCcchHHHH
Q 042869 149 GELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
..+....+++.++|.|..+..
T Consensus 183 --~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 183 --SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp --CHHHHHHHHHHTTTCHHHHHH
T ss_pred --CHHHHHHHHHHcCCCHHHHHH
Confidence 134467789999999976544
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.09 E-value=0.0065 Score=60.59 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... ..+.++.+.-.+ .. .+........+.+.....++.+|+||+
T Consensus 54 pGtGKT~la~ala~~~~~~----~~~~i~~~~l~~--------------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDE 113 (322)
T 1xwi_A 54 PGTGKSYLAKAVATEANNS----TFFSISSSDLVS--------------KW--LGESEKLVKNLFQLARENKPSIIFIDE 113 (322)
T ss_dssp SSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC--------------SS--CCSCHHHHHHHHHHHHHTSSEEEEEET
T ss_pred CCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh--------------hh--hhHHHHHHHHHHHHHHhcCCcEEEeec
Confidence 6999999999999875221 122333332111 00 001122333444444445689999999
Q ss_pred CCCccc-------------ccccccccCC---CCCCeEEEEeeCCccccc--cccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGSLD-------------LEAIGIPFAD---NNSGCKVLLTARSQDVLS--CKMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~~~-------------~~~l~~~l~~---~~~gs~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++.... ...+...+.. ...+-.||.||....... ........+.+...+.++-.+++.....
T Consensus 114 id~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~ 193 (322)
T 1xwi_A 114 IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG 193 (322)
T ss_dssp TTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh
Confidence 975410 0111111111 123445555665443221 0112335778889999999999988764
Q ss_pred CCCCCchhHHHHHHHHHHcCCc-chHHHHHHH
Q 042869 144 DCRENGELKSVAAEIVKECAGL-PIAIVPIAK 174 (707)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~~ 174 (707)
.....- .......|++.+.|. +-.|..+..
T Consensus 194 ~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 194 TTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 322111 134467888888887 434554433
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.07 E-value=0.00091 Score=69.99 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=84.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+++++.......-..+++++.. ++..++...+.... ...+.+... .+.-+|++||
T Consensus 139 ~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~vL~IDE 202 (440)
T 2z4s_A 139 VGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK---------LNEFREKYR-KKVDILLIDD 202 (440)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC---------HHHHHHHHT-TTCSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc---------HHHHHHHhc-CCCCEEEEeC
Confidence 6999999999999876543111224555433 33444443332210 112233332 1467999999
Q ss_pred CCCccc----ccccccccCC-CCCCeEEEEeeCCcccc--------ccccCCcceEEeecCChHHHHHHHHhhhc--CCC
Q 042869 82 IWGSLD----LEAIGIPFAD-NNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFKKMTG--DCR 146 (707)
Q Consensus 82 v~~~~~----~~~l~~~l~~-~~~gs~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~--~~~ 146 (707)
++.... .+.+...+.. ...|..||+||.+..-. .........+.+++++.++..+++.+.+. +..
T Consensus 203 i~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~ 282 (440)
T 2z4s_A 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE 282 (440)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 975431 1222222211 13467899988863211 00112224688999999999999988774 211
Q ss_pred CCchhHHHHHHHHHHcCCcchHHHH
Q 042869 147 ENGELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 147 ~~~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
.+ .+....|++.+.|.+-.+..
T Consensus 283 i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 283 LP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CC---TTHHHHHHHHCCSCHHHHHH
T ss_pred CC---HHHHHHHHHhcCCCHHHHHH
Confidence 12 23466788888998865443
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.03 E-value=0.0077 Score=60.18 Aligned_cols=149 Identities=14% Similarity=0.165 Sum_probs=80.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... .+.++. .++ ..... .........+.+.....+..+|+||+
T Consensus 60 pGtGKT~la~aia~~~~~~-----~~~v~~------~~l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDE 118 (322)
T 3eie_A 60 PGTGKSYLAKAVATEANST-----FFSVSS------SDL----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQ 118 (322)
T ss_dssp SSSCHHHHHHHHHHHHTCE-----EEEEEH------HHH----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHCCC-----EEEEch------HHH----hhccc------chHHHHHHHHHHHHHhcCCeEEEech
Confidence 6999999999999875322 222322 111 11100 11222334444444445678999999
Q ss_pred CCCccc-------------ccccccccC---CCCCCeEEEEeeCCcccccc--ccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGSLD-------------LEAIGIPFA---DNNSGCKVLLTARSQDVLSC--KMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~~~-------------~~~l~~~l~---~~~~gs~iivTtr~~~v~~~--~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++.... ...+...+. ....+..||.||........ .......+.+...+.++-.+++...+.
T Consensus 119 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 119 VDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp GGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc
Confidence 974311 111211111 22335555556665433210 012235678888999999999998875
Q ss_pred CCCCCchhHHHHHHHHHHcCCc-chHHHHH
Q 042869 144 DCRENGELKSVAAEIVKECAGL-PIAIVPI 172 (707)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 172 (707)
.....- .......+++.+.|. +-.|..+
T Consensus 199 ~~~~~~-~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 199 DTPCVL-TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp TCCCCC-CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred cCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 432211 123467788888874 4444443
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.00 E-value=0.0054 Score=64.01 Aligned_cols=144 Identities=16% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC-cCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT-PQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+||||+|+.+.+..... ++.++-. ....++ +.++. ........+++.+|++|
T Consensus 59 pGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~~~~-----------------~a~~~~~~~~~~iLfID 113 (447)
T 3pvs_A 59 PGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-REAIE-----------------RARQNRNAGRRTILFVD 113 (447)
T ss_dssp TTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HHHHH-----------------HHHHHHHTTCCEEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HHHHH-----------------HHHHhhhcCCCcEEEEe
Confidence 6999999999999875432 2222211 122221 11111 11111123468999999
Q ss_pred CCCCc--ccccccccccCCCCCCeEEEE-eeCCcc--ccccccCCcceEEeecCChHHHHHHHHhhhcCC------CCCc
Q 042869 81 DIWGS--LDLEAIGIPFADNNSGCKVLL-TARSQD--VLSCKMDCQQNFFVDVLNEKEAWSLFKKMTGDC------RENG 149 (707)
Q Consensus 81 dv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~------~~~~ 149 (707)
++... .+.+.+...+.. + .-.+|. ||.+.. +......-...+.+.+++.++...++.+.+... ....
T Consensus 114 EI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~ 191 (447)
T 3pvs_A 114 EVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIV 191 (447)
T ss_dssp TTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEE
T ss_pred ChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCc
Confidence 99754 334444433322 2 223333 444432 111111223478899999999999988776421 1112
Q ss_pred hhHHHHHHHHHHcCCcchHHHHH
Q 042869 150 ELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 150 ~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
-..+....+++.++|.+-.+..+
T Consensus 192 i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 192 LPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp CCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHH
Confidence 23566778888898887654443
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.0019 Score=65.74 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=85.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCC-cEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFE-KVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
+|+||||+|+.+.+.......+. ..+.++.+.......+ ++.+..+........ ... .......+++-+|++|
T Consensus 67 ~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~vliiD 140 (353)
T 1sxj_D 67 PGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTVSKP-SKH----DLENYPCPPYKIIILD 140 (353)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCCCCC-CTT----HHHHSCCCSCEEEEET
T ss_pred CCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhhhccccc-chh----hcccCCCCCceEEEEE
Confidence 69999999999998753211121 2333444433233222 222211111000000 000 0001112345799999
Q ss_pred CCCCcc--cccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHH
Q 042869 81 DIWGSL--DLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAE 157 (707)
Q Consensus 81 dv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~ 157 (707)
++.... ..+.+...+.......++|++|....-. .........+.+.+++.++....+.+.+..... .-..+....
T Consensus 141 E~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~ 219 (353)
T 1sxj_D 141 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCDDGVLER 219 (353)
T ss_dssp TGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 987542 2333333332233467788877654322 111111247889999999999998887643211 112456788
Q ss_pred HHHHcCCcchHHHHH
Q 042869 158 IVKECAGLPIAIVPI 172 (707)
Q Consensus 158 i~~~c~g~Plai~~~ 172 (707)
|++.++|.|-.+..+
T Consensus 220 l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 220 ILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHTSSCHHHHHHH
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999998765443
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.91 E-value=0.0027 Score=63.74 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++.+.... ..+.++.+.. .. +..++.+........ ..+++-+||+|+
T Consensus 57 ~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~-~~i~~~~~~~~~~~~----------------~~~~~~vliiDE 113 (324)
T 3u61_B 57 PGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KI-DFVRGPLTNFASAAS----------------FDGRQKVIVIDE 113 (324)
T ss_dssp TTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CH-HHHHTHHHHHHHBCC----------------CSSCEEEEEEES
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEccccc-CH-HHHHHHHHHHHhhcc----------------cCCCCeEEEEEC
Confidence 699999999999876532 2344554432 22 222221111100000 013578999999
Q ss_pred CCCcc---cccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHH-------hhhcCCCCCch
Q 042869 82 IWGSL---DLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFK-------KMTGDCRENGE 150 (707)
Q Consensus 82 v~~~~---~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~-------~~~~~~~~~~~ 150 (707)
++... ..+.+...+.....+.++|+||....-. .........+++++++.++-.+++. +.+......-.
T Consensus 114 i~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~ 193 (324)
T 3u61_B 114 FDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA 193 (324)
T ss_dssp CCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred CcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 98653 2333332222222456788888764422 1001112478999999887543332 22221111111
Q ss_pred hHHHHHHHHHHcCCcchHH
Q 042869 151 LKSVAAEIVKECAGLPIAI 169 (707)
Q Consensus 151 ~~~~~~~i~~~c~g~Plai 169 (707)
..+....+++.++|.+-.+
T Consensus 194 ~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 194 DMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp CHHHHHHHHHHTCSCTTHH
T ss_pred cHHHHHHHHHhCCCCHHHH
Confidence 1255677888888876543
No 190
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.011 Score=59.82 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++.... ..+.++.+.-... . ..........+.......++.+|+||+
T Consensus 126 pGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~--------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDE 184 (357)
T 3d8b_A 126 PGTGKTLIGKCIASQSGA-----TFFSISASSLTSK--------------W--VGEGEKMVRALFAVARCQQPAVIFIDE 184 (357)
T ss_dssp TTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS--------------S--TTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc--------------c--cchHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 699999999999876422 1334444321110 0 000112223333333334679999999
Q ss_pred CCCcc-------------cccccccccC----CCCCCeEEEEeeCCccccc--cccCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSL-------------DLEAIGIPFA----DNNSGCKVLLTARSQDVLS--CKMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~-------------~~~~l~~~l~----~~~~gs~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
++... ....+...+. ....+..||.||....... ........+.+...+.++..+++...+
T Consensus 185 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 185 IDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp HHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 95320 1112222221 1123445555665543221 111223467888899999888887766
Q ss_pred cCCCCCchhHHHHHHHHHHcCC-cchHHHHHHH
Q 042869 143 GDCRENGELKSVAAEIVKECAG-LPIAIVPIAK 174 (707)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~ 174 (707)
...... -..+....+++.+.| .+-++..+..
T Consensus 265 ~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 265 SKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 432111 113456778888888 4445555433
No 191
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.0011 Score=60.61 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||++|+.+++...
T Consensus 52 ~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 52 PGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999998764
No 192
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.76 E-value=0.02 Score=58.61 Aligned_cols=118 Identities=9% Similarity=0.075 Sum_probs=64.0
Q ss_pred ccceEEeccCCCCCCC--CCCCCCCccceeeeccccccccCchhhcCCCCccEEEecCCCcccCCccccccCCCCEEEec
Q 042869 320 KVCTAISLNNSNISEP--PQGFECPQLRFLCIGYHASLRIPSNFFTGMTELRVLDFTQMYLLALPSSLGLLQNLQTLSLE 397 (707)
Q Consensus 320 ~~~~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 397 (707)
.+++.+.+... +..+ ..+..|.+|+.+.+..+ ...+....|.++ +|..+.+..+ +..++...-...+|+.+.+.
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECC
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCC
Confidence 45666666543 3222 23457899999999743 667777888887 5777776543 44444333233478888886
Q ss_pred CCCCCCc-ccccCCCCCcEEEcCCCchhhch-HHhhcCcCCCEEcCCC
Q 042869 398 NCKLGDM-AIIGDLKKLEILTLRGSNMQKLV-EEIGRLTQLRLLDLSN 443 (707)
Q Consensus 398 ~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~ 443 (707)
.+-..-. ..+.+ .+|....+..+ +..+. ..+..+.+++...+..
T Consensus 122 ~~~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 122 GATTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TTCCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred Ccccccccccccc-ceeeeeeccce-eeccccchhccccccccccccc
Confidence 5421111 12222 24555544432 22222 2234556666665544
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.75 E-value=0.009 Score=60.51 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=78.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... .+.++.+ ++.. ... .........+.......+..+|+||+
T Consensus 93 pGtGKT~la~ala~~~~~~-----~~~v~~~------~l~~----~~~------g~~~~~~~~~f~~a~~~~~~vl~iDE 151 (355)
T 2qp9_X 93 PGTGKSYLAKAVATEANST-----FFSVSSS------DLVS----KWM------GESEKLVKQLFAMARENKPSIIFIDQ 151 (355)
T ss_dssp TTSCHHHHHHHHHHHHTCE-----EEEEEHH------HHHS----CC---------CHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCCcHHHHHHHHHHHhCCC-----EEEeeHH------HHhh----hhc------chHHHHHHHHHHHHHHcCCeEEEEec
Confidence 6999999999999876322 2222221 1111 100 00122233444444445689999999
Q ss_pred CCCccc-------------ccccccccC---CCCCCeEEEEeeCCccccc--cccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGSLD-------------LEAIGIPFA---DNNSGCKVLLTARSQDVLS--CKMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~~~-------------~~~l~~~l~---~~~~gs~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++.... ...+...+. ....+..||.||....... ........+.+...+.++-.+++...+.
T Consensus 152 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 152 VDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVG 231 (355)
T ss_dssp GGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh
Confidence 975321 112211111 1123455555665543221 1112345778899999999999988775
Q ss_pred CCCCCchhHHHHHHHHHHcCCc-chHHHHHH
Q 042869 144 DCRENGELKSVAAEIVKECAGL-PIAIVPIA 173 (707)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 173 (707)
.....- .......|++.+.|. +-.|..+.
T Consensus 232 ~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 232 DTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp TSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 332111 123467788888884 44454443
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.65 E-value=0.019 Score=60.04 Aligned_cols=151 Identities=16% Similarity=0.225 Sum_probs=77.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... -++.++.. ++..... +. .......+++.....+..+|+||+
T Consensus 176 pGtGKT~lA~aia~~~~~~------~~~~v~~~----~l~~~~~---g~-------~~~~~~~~f~~a~~~~~~vl~iDE 235 (444)
T 2zan_A 176 PGTGKSYLAKAVATEANNS------TFFSISSS----DLVSKWL---GE-------SEKLVKNLFQLARENKPSIIFIDE 235 (444)
T ss_dssp TTSSHHHHHHHHHHHCCSS------EEEEECCC-----------------------CCCTHHHHHHHHHHSCSEEEEESC
T ss_pred CCCCHHHHHHHHHHHcCCC------CEEEEeHH----HHHhhhc---ch-------HHHHHHHHHHHHHHcCCeEEEEec
Confidence 6999999999999875211 12323221 1111100 10 011223344444444679999999
Q ss_pred CCCcc------c-------ccccccccCC---CCCCeEEEEeeCCccccc--cccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGSL------D-------LEAIGIPFAD---NNSGCKVLLTARSQDVLS--CKMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~~------~-------~~~l~~~l~~---~~~gs~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++... + ...+...+.. ...+..||.||....... ........+.+...+.++...+|..++.
T Consensus 236 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 236 IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG 315 (444)
T ss_dssp TTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh
Confidence 97541 0 1112222211 123556666666543321 1112235678888888888889988774
Q ss_pred CCCCCchhHHHHHHHHHHcCCc-chHHHHHH
Q 042869 144 DCRENGELKSVAAEIVKECAGL-PIAIVPIA 173 (707)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 173 (707)
..... ........|++.+.|. +-.|..+.
T Consensus 316 ~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 316 STQNS-LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp TSCEE-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 32211 1123467788888885 44444443
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.016 Score=58.57 Aligned_cols=142 Identities=12% Similarity=0.136 Sum_probs=78.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.+|+++++..... .+.+..+.-.+ ...+.....+..+++.-....++.|++|+
T Consensus 191 PGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s----------------k~vGese~~vr~lF~~Ar~~aP~IIFiDE 249 (405)
T 4b4t_J 191 PGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ----------------KYIGEGSRMVRELFVMAREHAPSIIFMDE 249 (405)
T ss_dssp SSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc----------------cccchHHHHHHHHHHHHHHhCCceEeeec
Confidence 7999999999999876543 22333332111 00111222344455544445689999999
Q ss_pred CCCcc----------c------ccccccccCC--CCCCeEEEEeeCCccccc----cccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL----------D------LEAIGIPFAD--NNSGCKVLLTARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~----------~------~~~l~~~l~~--~~~gs~iivTtr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++..- + ...+...+.. ...+-.||-||...+... ....-+..+.++..+.++-.++|.
T Consensus 250 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 250 IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329 (405)
T ss_dssp SSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred chhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHH
Confidence 97431 0 1112222222 223445556666655441 112345688999999999999998
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
.+........+. + ...+++.+.|.-
T Consensus 330 ~~~~~~~l~~dv-d-l~~lA~~t~G~S 354 (405)
T 4b4t_J 330 IHSRKMNLTRGI-N-LRKVAEKMNGCS 354 (405)
T ss_dssp HHHTTSBCCSSC-C-HHHHHHHCCSCC
T ss_pred HHhcCCCCCccC-C-HHHHHHHCCCCC
Confidence 776432221111 0 456777887754
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.59 E-value=0.0035 Score=62.36 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+.+++...........-++.++. .++ ....... .......+.+.. +..+|++|+
T Consensus 76 ~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~----~~l--------~~~~~g~--~~~~~~~~~~~~---~~~vl~iDE 138 (309)
T 3syl_A 76 PGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR----DDL--------VGQYIGH--TAPKTKEVLKRA---MGGVLFIDE 138 (309)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG----GGT--------CCSSTTC--HHHHHHHHHHHH---TTSEEEEET
T ss_pred CCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH----HHh--------hhhcccc--cHHHHHHHHHhc---CCCEEEEEC
Confidence 69999999999988765432222212233221 010 0000000 111112222222 346999999
Q ss_pred CCCc-----------ccccccccccCCCCCCeEEEEeeCCcccc-------ccccCCcceEEeecCChHHHHHHHHhhhc
Q 042869 82 IWGS-----------LDLEAIGIPFADNNSGCKVLLTARSQDVL-------SCKMDCQQNFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 82 v~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v~-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
++.. +....+...+.....+..||.||...... .........+.+++++.++-.+++...+.
T Consensus 139 id~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 139 AYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp GGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 9733 12233333333334466777777543210 00001236789999999999999887764
No 197
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0057 Score=62.16 Aligned_cols=100 Identities=8% Similarity=0.040 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCCcc--cccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCc
Q 042869 73 PKILIILDDIWGSL--DLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENG 149 (707)
Q Consensus 73 kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 149 (707)
++-++|+|++.... ..+.+...+.....+.++|++|.+.... .........+++.+++.++..+.+.+.+......
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ- 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-
Confidence 56799999998642 2233333332223467888888764322 1111223678999999999999998776421111
Q ss_pred hh-HHHHHHHHHHcCCcchHHHHHH
Q 042869 150 EL-KSVAAEIVKECAGLPIAIVPIA 173 (707)
Q Consensus 150 ~~-~~~~~~i~~~c~g~Plai~~~~ 173 (707)
-. .+....|++.++|.+-.+..+.
T Consensus 213 ~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2456788889999886554443
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.48 E-value=0.0034 Score=62.93 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.+++..... -..++++++ .++..++...+... ......+... +.-+|++||
T Consensus 46 ~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~vL~iDE 106 (324)
T 1l8q_A 46 VGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKKG---------TINEFRNMYK--SVDLLLLDD 106 (324)
T ss_dssp SSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHHT---------CHHHHHHHHH--TCSEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHcC---------cHHHHHHHhc--CCCEEEEcC
Confidence 6999999999999876543 122344543 33334443333211 0112222232 357999999
Q ss_pred CCCccc---c-cccccccC-CCCCCeEEEEeeCCccc-----c---ccccCCcceEEeecCChHHHHHHHHhhhcCCCCC
Q 042869 82 IWGSLD---L-EAIGIPFA-DNNSGCKVLLTARSQDV-----L---SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCREN 148 (707)
Q Consensus 82 v~~~~~---~-~~l~~~l~-~~~~gs~iivTtr~~~v-----~---~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 148 (707)
+..... + +.+...+. ....|.+||+||....- . .........+++++ +.++..+++.+.+.....
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~- 184 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL- 184 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-
T ss_pred cccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-
Confidence 975431 1 12222211 11245678888875322 1 00112225689999 999999999887742111
Q ss_pred chhHHHHHHHHHHcCCcch
Q 042869 149 GELKSVAAEIVKECAGLPI 167 (707)
Q Consensus 149 ~~~~~~~~~i~~~c~g~Pl 167 (707)
.-..+....+++.+ |..-
T Consensus 185 ~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 185 ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp CCCHHHHHHHHHHC-SSHH
T ss_pred CCCHHHHHHHHHhC-CCHH
Confidence 11245567778888 7654
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.47 E-value=0.0018 Score=58.53 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.+++.......+. ++++ +..++...+......... . ...+.+. +.-+|||||
T Consensus 47 ~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~-----~----~~~~~~~--~~~llilDE 108 (180)
T 3ec2_A 47 PGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD-----T----KFLKTVL--NSPVLVLDD 108 (180)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC-----S----HHHHHHH--TCSEEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH-----H----HHHHHhc--CCCEEEEeC
Confidence 69999999999999875332222 2233 344454444433221111 1 2333333 356899999
Q ss_pred CCC--ccccc--ccccccCC-CCCCeEEEEeeCCc
Q 042869 82 IWG--SLDLE--AIGIPFAD-NNSGCKVLLTARSQ 111 (707)
Q Consensus 82 v~~--~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 111 (707)
++. .+.|. .+...+.. ...|..||+||...
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 973 23333 11111111 12467788888764
No 200
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.0078 Score=64.46 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=80.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHH-HhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLER-LKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l~~~kr~LlVlD 80 (707)
+|+||||+|+.+++... + .++.++++...... +....+........... ......+. ...+++.+||+|
T Consensus 86 pGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 86 PGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKT-LLNAGVKNALDNMSVVG----YFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp TTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHH-HHHHTGGGGTTBCCSTT----TTTC----CCSSTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHH-HHHHHHHHHhccccHHH----HHhhhhhhhhccCCCeEEEEE
Confidence 69999999999998762 2 23344555443332 22222221111000000 00000000 112467999999
Q ss_pred CCCCccc-----ccccccccCCCCCCeEEEEeeCCccc--cccccCCcceEEeecCChHHHHHHHHhhhcC--CCCCchh
Q 042869 81 DIWGSLD-----LEAIGIPFADNNSGCKVLLTARSQDV--LSCKMDCQQNFFVDVLNEKEAWSLFKKMTGD--CRENGEL 151 (707)
Q Consensus 81 dv~~~~~-----~~~l~~~l~~~~~gs~iivTtr~~~v--~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~--~~~~~~~ 151 (707)
+++.... +..+...+.. .+..||+++.+... ..........+.+.+++.++..+.+.+.+.. ....
T Consensus 156 Eid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--- 230 (516)
T 1sxj_A 156 EVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--- 230 (516)
T ss_dssp SGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---
T ss_pred CCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---
Confidence 9975421 1222222211 23346666554321 1111122347899999999999988876642 1111
Q ss_pred HHHHHHHHHHcCC-cchHHHHHHH
Q 042869 152 KSVAAEIVKECAG-LPIAIVPIAK 174 (707)
Q Consensus 152 ~~~~~~i~~~c~g-~Plai~~~~~ 174 (707)
.+....|++.++| ++-++..+..
T Consensus 231 ~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 231 PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2346778899998 4455555543
No 201
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.45 E-value=0.019 Score=57.76 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=44.4
Q ss_pred eEEEEeeCCccccc--cccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHHH
Q 042869 102 CKVLLTARSQDVLS--CKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPIA 173 (707)
Q Consensus 102 s~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 173 (707)
-++|.+|....... ........+.+.+++.++...++.+.+.... ..-..+....+++.+.|.|-.+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 45666666533221 0112236799999999999999988774322 12224567788889999985554443
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.42 E-value=0.041 Score=56.48 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++.... ..+.++.+.-.. ... +. .......+.+.....+..+|+||+
T Consensus 157 pGtGKT~la~aia~~~~~-----~~~~v~~~~l~~--~~~-------g~-------~~~~~~~~~~~a~~~~~~il~iDE 215 (389)
T 3vfd_A 157 PGNGKTMLAKAVAAESNA-----TFFNISAASLTS--KYV-------GE-------GEKLVRALFAVARELQPSIIFIDQ 215 (389)
T ss_dssp TTSCHHHHHHHHHHHTTC-----EEEEECSCCC-----------------------CHHHHHHHHHHHHHSSSEEEEEET
T ss_pred CCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc--ccc-------ch-------HHHHHHHHHHHHHhcCCeEEEEEC
Confidence 699999999999876432 123333322111 000 00 111223334433334568999999
Q ss_pred CCCcc--------c-----ccccccccC---C-CCCCeEEEEeeCCccccc--cccCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSL--------D-----LEAIGIPFA---D-NNSGCKVLLTARSQDVLS--CKMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~--------~-----~~~l~~~l~---~-~~~gs~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
++... . ...+...+. . ....-.||.||....... ........+.+...+.++..+++...+
T Consensus 216 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 216 VDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp GGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHH
Confidence 96430 0 011111111 1 122344555665433221 111223467888999999999988776
Q ss_pred cCCCCCchhHHHHHHHHHHcCCcch-HHHHH
Q 042869 143 GDCRENGELKSVAAEIVKECAGLPI-AIVPI 172 (707)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 172 (707)
...... -..+....+++.+.|..- ++..+
T Consensus 296 ~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 296 CKQGSP-LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp TTSCCC-SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HhcCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 432211 123456788888888654 44444
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.014 Score=59.57 Aligned_cols=48 Identities=4% Similarity=-0.109 Sum_probs=32.7
Q ss_pred ceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcC-CcchHHH
Q 042869 122 QNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECA-GLPIAIV 170 (707)
Q Consensus 122 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~-g~Plai~ 170 (707)
..+.+.+++.++..+++.+.+..... .-..+....+++.+. |.|-.+.
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHH
Confidence 35799999999999999877643211 122455777888887 7765443
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.33 E-value=0.0037 Score=57.68 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+++++....+ ...+++++++ ++...+....... . ...+.+.+.+ .-+|||||
T Consensus 63 ~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~----~-----~~~~~~~~~~--~~~lilDe 123 (202)
T 2w58_A 63 FGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQ----T-----MNEKLDYIKK--VPVLMLDD 123 (202)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---C----C-----CHHHHHHHHH--SSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccc----h-----HHHHHHHhcC--CCEEEEcC
Confidence 6999999999999877543 3345566543 4444443322111 0 1222333433 24999999
Q ss_pred CCCc--ccccc--cccccCC--CCCCeEEEEeeCCc
Q 042869 82 IWGS--LDLEA--IGIPFAD--NNSGCKVLLTARSQ 111 (707)
Q Consensus 82 v~~~--~~~~~--l~~~l~~--~~~gs~iivTtr~~ 111 (707)
++.. ..|.. +...+.. ...+.++|+||...
T Consensus 124 i~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 124 LGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 9653 34432 2211111 12356788888753
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.013 Score=58.95 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCC-cEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFE-KVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILD 80 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 80 (707)
.|+||||+|+.++...... .+. .+.-++.+.......+ ++.+..+..... ...+.+-++|+|
T Consensus 55 ~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~i-r~~i~~~~~~~~---------------~~~~~~~viiiD 117 (340)
T 1sxj_C 55 PGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVV-RNQIKDFASTRQ---------------IFSKGFKLIILD 117 (340)
T ss_dssp SSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCC---------------SSSCSCEEEEET
T ss_pred CCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHH-HHHHHHHHhhcc---------------cCCCCceEEEEe
Confidence 6999999999999875432 121 1223333332222211 111111100000 001236789999
Q ss_pred CCCCc--ccccccccccCCCCCCeEEEEeeCCcccc-ccccCCcceEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHH
Q 042869 81 DIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAE 157 (707)
Q Consensus 81 dv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~ 157 (707)
++... ...+.+...+.......++|++|....-. .........+.+.+++.++..+.+.+.+...... -..+....
T Consensus 118 e~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~ 196 (340)
T 1sxj_C 118 EADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK-LSPNAEKA 196 (340)
T ss_dssp TGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 98643 22333333222223456777777654321 1111112468899999999888887665321111 11345677
Q ss_pred HHHHcCCcchH
Q 042869 158 IVKECAGLPIA 168 (707)
Q Consensus 158 i~~~c~g~Pla 168 (707)
+++.++|.+--
T Consensus 197 i~~~s~G~~r~ 207 (340)
T 1sxj_C 197 LIELSNGDMRR 207 (340)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHHcCCCHHH
Confidence 88888887753
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.30 E-value=0.052 Score=53.38 Aligned_cols=149 Identities=13% Similarity=0.144 Sum_probs=76.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+++++..... .+.++.+.-... .. .........+.......+..+|++|+
T Consensus 63 ~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~~--------------~~--~~~~~~~~~~~~~~~~~~~~vl~iDE 121 (297)
T 3b9p_A 63 PGNGKTLLARAVATECSAT-----FLNISAASLTSK--------------YV--GDGEKLVRALFAVARHMQPSIIFIDE 121 (297)
T ss_dssp SSSCHHHHHHHHHHHTTCE-----EEEEESTTTSSS--------------SC--SCHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhhc--------------cc--chHHHHHHHHHHHHHHcCCcEEEecc
Confidence 6999999999998865321 233443321110 00 00112223333333334678999999
Q ss_pred CCCcccc-------------cccccc---cCCC--CCCeEEEEeeCCcccccc--ccCCcceEEeecCChHHHHHHHHhh
Q 042869 82 IWGSLDL-------------EAIGIP---FADN--NSGCKVLLTARSQDVLSC--KMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 82 v~~~~~~-------------~~l~~~---l~~~--~~gs~iivTtr~~~v~~~--~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
+.....- ..+... ++.. +.+..||.||........ .......+.+...+.++...++...
T Consensus 122 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp GGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_pred HHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHH
Confidence 9654110 011111 1111 134556666665432210 0012346777888888888888776
Q ss_pred hcCCCCCchhHHHHHHHHHHcCCcch-HHHHH
Q 042869 142 TGDCRENGELKSVAAEIVKECAGLPI-AIVPI 172 (707)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 172 (707)
+...... -..+....+++.+.|.+- ++..+
T Consensus 202 ~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 202 LQKQGSP-LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 6432111 113456778888888875 44444
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.045 Score=56.23 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... .+.+..+.-.+ ...+.....+..++..-.....++|++|+
T Consensus 252 PGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDE 310 (467)
T 4b4t_H 252 PGTGKTLCARAVANRTDAT-----FIRVIGSELVQ----------------KYVGEGARMVRELFEMARTKKACIIFFDE 310 (467)
T ss_dssp TTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC----------------CSSSHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc----------------ccCCHHHHHHHHHHHHHHhcCCceEeecc
Confidence 7999999999999876543 22333322111 00111122334444444445689999999
Q ss_pred CCCcc--------c--------ccccccccCCC--CCCeEEEEeeCCcccccc----ccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL--------D--------LEAIGIPFADN--NSGCKVLLTARSQDVLSC----KMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~--------~--------~~~l~~~l~~~--~~gs~iivTtr~~~v~~~----~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... . ...+...+... ..+-.||.||........ .......+++...+.++-.++|.
T Consensus 311 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 311 IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp CTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHH
T ss_pred cccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHH
Confidence 97431 0 01111112111 223344556655444311 11345678888889999899998
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
.+........+. + ...|++.+.|.-
T Consensus 391 ~~l~~~~l~~dv-d-l~~LA~~T~GfS 415 (467)
T 4b4t_H 391 IHSKSMSVERGI-R-WELISRLCPNST 415 (467)
T ss_dssp HHHTTSCBCSSC-C-HHHHHHHCCSCC
T ss_pred HHhcCCCCCCCC-C-HHHHHHHCCCCC
Confidence 776432221111 0 355777787753
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0085 Score=61.61 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=74.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.+|+++++..... .+.++.+.-.+ . ..+.....+..++..-.....++|++|+
T Consensus 224 PGTGKTllAkAiA~e~~~~-----f~~v~~s~l~~--------------~--~vGese~~ir~lF~~A~~~aP~IifiDE 282 (434)
T 4b4t_M 224 PGTGKTLLARACAAQTNAT-----FLKLAAPQLVQ--------------M--YIGEGAKLVRDAFALAKEKAPTIIFIDE 282 (434)
T ss_dssp TTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCS--------------S--CSSHHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCC-----EEEEehhhhhh--------------c--ccchHHHHHHHHHHHHHhcCCeEEeecc
Confidence 7999999999999876543 22333322110 0 0111122333444433334689999999
Q ss_pred CCCc-------cc---------ccccccccCCCC--CCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGS-------LD---------LEAIGIPFADNN--SGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~-------~~---------~~~l~~~l~~~~--~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++.. .. ...+...+.... .+-.||-||........+ ..-...++++..+.++-.++|.
T Consensus 283 iDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 283 LDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp THHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred hhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHH
Confidence 8632 00 111222222222 233455566665544211 1234578888889888888888
Q ss_pred hhhcCCC--CCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCR--ENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~i~~~c~g~P 166 (707)
.+..... ...+ ...+++.+.|.-
T Consensus 363 ~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 363 IHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp HHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred HHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 7664222 2222 355777777753
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.12 E-value=0.056 Score=53.19 Aligned_cols=142 Identities=13% Similarity=0.208 Sum_probs=74.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... ++.+ +..++..... +.. ......+.+.....+..+|++|+
T Consensus 58 ~GtGKT~la~ala~~~~~~-------~i~v----~~~~l~~~~~---g~~-------~~~~~~~f~~a~~~~p~il~iDE 116 (301)
T 3cf0_A 58 PGCGKTLLAKAIANECQAN-------FISI----KGPELLTMWF---GES-------EANVREIFDKARQAAPCVLFFDE 116 (301)
T ss_dssp SSSSHHHHHHHHHHHTTCE-------EEEE----CHHHHHHHHH---TTC-------TTHHHHHHHHHHHTCSEEEEECS
T ss_pred CCcCHHHHHHHHHHHhCCC-------EEEE----EhHHHHhhhc---Cch-------HHHHHHHHHHHHhcCCeEEEEEC
Confidence 6999999999999865321 1222 2223322211 111 11233444444444679999999
Q ss_pred CCCcc------------c----ccccccccC--CCCCCeEEEEeeCCccccccc-c---CCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------D----LEAIGIPFA--DNNSGCKVLLTARSQDVLSCK-M---DCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... . ...+...+. ....+..||.||......... . .....+.+...+.++-.+++.
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 117 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred hHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHH
Confidence 97420 0 111221111 112355666677654332111 1 233578899999999888887
Q ss_pred hhhcCCC--CCchhHHHHHHHHHHcCCcchH
Q 042869 140 KMTGDCR--ENGELKSVAAEIVKECAGLPIA 168 (707)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~i~~~c~g~Pla 168 (707)
....... ...+ ...+++.+.|.|-+
T Consensus 197 ~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 197 ANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp HHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred HHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 7764221 1122 23456667777643
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.021 Score=58.75 Aligned_cols=140 Identities=20% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... .+.++.+.-.+ ...+.....+..++..-.....++|++|+
T Consensus 224 PGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s----------------k~~Gese~~ir~~F~~A~~~~P~IifiDE 282 (437)
T 4b4t_L 224 PGTGKTLLAKAVAATIGAN-----FIFSPASGIVD----------------KYIGESARIIREMFAYAKEHEPCIIFMDE 282 (437)
T ss_dssp TTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEEC
T ss_pred CCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc----------------ccchHHHHHHHHHHHHHHhcCCceeeeec
Confidence 7999999999999876543 22333332111 00111122334444444445789999999
Q ss_pred CCCcc--------c--------ccccccccC--CCCCCeEEEEeeCCcccccccc----CCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL--------D--------LEAIGIPFA--DNNSGCKVLLTARSQDVLSCKM----DCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~--------~--------~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++..- . ...+...+. ....+-.||.||........+. .-...+.++..+.++-.++|.
T Consensus 283 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp CCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHH
T ss_pred ccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHH
Confidence 97431 0 111222221 2223456677777655442111 134567888888888888888
Q ss_pred hhhcCCC--CCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCR--ENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~i~~~c~g~P 166 (707)
.+..... ...+ ...+++.+.|.-
T Consensus 363 ~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 363 IHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp HHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred HHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 7764322 2222 355677777754
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.083 Score=53.71 Aligned_cols=140 Identities=15% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.+|+++++..... | +.++.+.-.+ ...+.....+..+++.-.....++|++|+
T Consensus 225 PGTGKTlLAkAiA~e~~~~--f---i~v~~s~l~s----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDE 283 (437)
T 4b4t_I 225 PGTGKTLLAKAVANQTSAT--F---LRIVGSELIQ----------------KYLGDGPRLCRQIFKVAGENAPSIVFIDE 283 (437)
T ss_dssp TTTTHHHHHHHHHHHHTCE--E---EEEESGGGCC----------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred CCchHHHHHHHHHHHhCCC--E---EEEEHHHhhh----------------ccCchHHHHHHHHHHHHHhcCCcEEEEeh
Confidence 7999999999999876543 2 2233221110 00111222344444444445689999999
Q ss_pred CCCcc-------c---------ccccccccC--CCCCCeEEEEeeCCcccccccc----CCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL-------D---------LEAIGIPFA--DNNSGCKVLLTARSQDVLSCKM----DCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~-------~---------~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... . ...+...+. ....+-.||.||...+....+. ..+..+.+..-+.++-.++|.
T Consensus 284 iDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 284 IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp ESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHH
T ss_pred hhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHH
Confidence 97430 0 011111111 1223445566666655442111 223467788888888888998
Q ss_pred hhhcCCC--CCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCR--ENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~i~~~c~g~P 166 (707)
.+..... ...+ ...+++.+.|.-
T Consensus 364 ~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 364 IHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp HHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred HHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 7764322 2222 345677777653
No 212
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.021 Score=56.11 Aligned_cols=122 Identities=16% Similarity=0.063 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHHhhh-ccCCCcEEEEEecC-CcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKE-NNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVl 79 (707)
.|+||||+|+.+.+.... +.......+++.+. ...+.++ +++.+.+..... .+++-++|+
T Consensus 27 ~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p~-----------------~~~~kvviI 88 (305)
T 2gno_A 27 DLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSPE-----------------LYTRKYVIV 88 (305)
T ss_dssp SSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCCS-----------------SSSSEEEEE
T ss_pred CCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhccc-----------------cCCceEEEe
Confidence 699999999999875211 11122345555443 2333222 334333321110 135679999
Q ss_pred eCCCCc--ccccccccccCCCCCCeEEEEeeCCccccccccCCcceEEeecCChHHHHHHHHhhh
Q 042869 80 DDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 80 Ddv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
|+++.- +..+.+...+-.....+.+|++|.++.-........ .+++.++++++..+.+.+..
T Consensus 89 dead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 89 HDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 999754 345555544433345778888876654221122233 89999999999999888765
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.58 E-value=0.082 Score=50.63 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+++++..... .+.++.+.-.+. .. .. .......+.+........++++|+
T Consensus 54 ~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~~----------~~----~~--~~~~~~~~~~~a~~~~~~il~iDe 112 (257)
T 1lv7_A 54 PGTGKTLLAKAIAGEAKVP-----FFTISGSDFVEM----------FV----GV--GASRVRDMFEQAKKAAPCIIFIDE 112 (257)
T ss_dssp TTSCHHHHHHHHHHHHTCC-----EEEECSCSSTTS----------CC----CC--CHHHHHHHHHHHHTTCSEEEEETT
T ss_pred CCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHHH----------hh----hh--hHHHHHHHHHHHHHcCCeeehhhh
Confidence 6999999999999865321 233332221110 00 00 111233344444444568999999
Q ss_pred CCCccc----------------ccccccccC--CCCCCeEEEEeeCCccccccc-c---CCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSLD----------------LEAIGIPFA--DNNSGCKVLLTARSQDVLSCK-M---DCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~~----------------~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++.... ...+...+. ....+..||.||...+..... . .....+.++..+.++-.+++.
T Consensus 113 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~ 192 (257)
T 1lv7_A 113 IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILK 192 (257)
T ss_dssp HHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred hhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHH
Confidence 842210 011111111 112345566666654422111 1 123467788888888888887
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCC-cchHHHH
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAG-LPIAIVP 171 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~ 171 (707)
.........++. ....+++...| .+--+..
T Consensus 193 ~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 193 VHMRRVPLAPDI--DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp HHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHH
T ss_pred HHHhcCCCCccc--cHHHHHHHcCCCCHHHHHH
Confidence 665422111111 13346667777 5544443
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.085 Score=54.15 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=70.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... .+.++.+.-.+ ...+.....+..+++.-....+++|++|+
T Consensus 215 PGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDE 273 (428)
T 4b4t_K 215 PGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH----------------KYLGEGPRMVRDVFRLARENAPSIIFIDE 273 (428)
T ss_dssp TTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCC-----eEEEecchhhc----------------cccchhHHHHHHHHHHHHHcCCCeeechh
Confidence 7999999999999876432 22333332111 00111222334444444445689999999
Q ss_pred CCCc--------cc--------ccccccccC--CCCCCeEEEEeeCCcccccc----ccCCcceEEeecCC-hHHHHHHH
Q 042869 82 IWGS--------LD--------LEAIGIPFA--DNNSGCKVLLTARSQDVLSC----KMDCQQNFFVDVLN-EKEAWSLF 138 (707)
Q Consensus 82 v~~~--------~~--------~~~l~~~l~--~~~~gs~iivTtr~~~v~~~----~~~~~~~~~l~~L~-~~~a~~Lf 138 (707)
++.. .. ...+...+. ....+-.||.||...+.... .......+++..+. .++-..+|
T Consensus 274 iD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il 353 (428)
T 4b4t_K 274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIF 353 (428)
T ss_dssp THHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHH
T ss_pred hhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHH
Confidence 9521 00 111222221 22334456666666554311 11223456676554 45555666
Q ss_pred HhhhcCCC--CCchhHHHHHHHHHHcCCcc
Q 042869 139 KKMTGDCR--ENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 139 ~~~~~~~~--~~~~~~~~~~~i~~~c~g~P 166 (707)
..+..... +..+ ...+++.+.|.-
T Consensus 354 ~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 354 GTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp HHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred HHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 66554322 2222 345667777653
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.10 E-value=0.0064 Score=52.58 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+|||++|+.+++..
T Consensus 33 ~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 33 PGTGRMTGARYLHQFG 48 (145)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhC
Confidence 6999999999998754
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.06 E-value=0.16 Score=53.01 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+++++..... .+.++.+.-... ... ........+++....+...+|+||+
T Consensus 58 pGtGKT~Laraia~~~~~~-----f~~is~~~~~~~----------~~g------~~~~~~r~lf~~A~~~~p~ILfIDE 116 (476)
T 2ce7_A 58 PGTGKTLLARAVAGEANVP-----FFHISGSDFVEL----------FVG------VGAARVRDLFAQAKAHAPCIVFIDE 116 (476)
T ss_dssp TTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC----------CTT------HHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH----------Hhc------ccHHHHHHHHHHHHhcCCCEEEEec
Confidence 6999999999999865332 223333322110 000 0111233444444445689999999
Q ss_pred CCCcc----------------cccccccccC--CCCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL----------------DLEAIGIPFA--DNNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... ....+...+. ....+-.||.||...+..... ......+.++..+.++-.+++.
T Consensus 117 id~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~ 196 (476)
T 2ce7_A 117 IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILE 196 (476)
T ss_dssp GGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred hhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHH
Confidence 96431 1112221111 112355666677665443211 1223477888888888888887
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
.++......++. + ...+++.+.|..
T Consensus 197 ~~~~~~~l~~~v-~-l~~la~~t~G~s 221 (476)
T 2ce7_A 197 IHTRNKPLAEDV-N-LEIIAKRTPGFV 221 (476)
T ss_dssp HHHTTSCBCTTC-C-HHHHHHTCTTCC
T ss_pred HHHHhCCCcchh-h-HHHHHHhcCCCc
Confidence 766432211111 1 344777888876
No 217
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.44 E-value=0.035 Score=53.63 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=38.2
Q ss_pred CcEEEEEeCCCCcc-----------------cccccccccCCC---CCCeEEEEeeCCccccc----cccCCcceEEeec
Q 042869 73 PKILIILDDIWGSL-----------------DLEAIGIPFADN---NSGCKVLLTARSQDVLS----CKMDCQQNFFVDV 128 (707)
Q Consensus 73 kr~LlVlDdv~~~~-----------------~~~~l~~~l~~~---~~gs~iivTtr~~~v~~----~~~~~~~~~~l~~ 128 (707)
+..+|++|+++... ....+...+... .....||.||....... ........+.++.
T Consensus 103 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~ 182 (268)
T 2r62_A 103 APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182 (268)
T ss_dssp CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCC
T ss_pred CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecC
Confidence 56899999996431 122232222211 11245666666554221 1111234677888
Q ss_pred CChHHHHHHHHhhhc
Q 042869 129 LNEKEAWSLFKKMTG 143 (707)
Q Consensus 129 L~~~~a~~Lf~~~~~ 143 (707)
.+.++-.+++...+.
T Consensus 183 p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 183 PDFNGRVEILKVHIK 197 (268)
T ss_dssp CCTTTHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHh
Confidence 888888888876653
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.43 E-value=0.11 Score=51.34 Aligned_cols=76 Identities=24% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||+|+.++...... -...+.++++...... ....+ ++.......... ...+.+.+.....-+++||+
T Consensus 56 ~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~l---~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 56 TGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSRL---IGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp SSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHHH---HCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEET
T ss_pred CCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHHh---cCCCCccccccc--cchHHHHHHhCCCeEEEEeC
Confidence 6999999999999876432 1234555555433221 11111 221111111000 01233333333457999999
Q ss_pred CCCc
Q 042869 82 IWGS 85 (707)
Q Consensus 82 v~~~ 85 (707)
+...
T Consensus 128 i~~l 131 (311)
T 4fcw_A 128 IEKA 131 (311)
T ss_dssp GGGS
T ss_pred hhhc
Confidence 9754
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.41 E-value=0.22 Score=52.36 Aligned_cols=141 Identities=11% Similarity=0.162 Sum_probs=72.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++.... ..+.++++ ++ ...+. +........+++...+++..+|+||+
T Consensus 247 pGtGKT~lAraia~~~~~-----~fv~vn~~------~l----~~~~~------g~~~~~~~~~f~~A~~~~p~iLfLDE 305 (489)
T 3hu3_A 247 PGTGKTLIARAVANETGA-----FFFLINGP------EI----MSKLA------GESESNLRKAFEEAEKNAPAIIFIDE 305 (489)
T ss_dssp TTSSHHHHHHHHHHHCSS-----EEEEEEHH------HH----HTSCT------THHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEEch------Hh----hhhhc------chhHHHHHHHHHHHHhcCCcEEEecc
Confidence 699999999999876421 12333321 11 11111 11122233444444455678999999
Q ss_pred CCCcc-------------cccccccccC--CCCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSL-------------DLEAIGIPFA--DNNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~-------------~~~~l~~~l~--~~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
++... ....+...+. ....+-+||.||......... ......+.+...+.++-.+++..++
T Consensus 306 Id~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp HHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred hhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 94220 0111221211 122344555566554322111 1223468899999999999998877
Q ss_pred cCCCCCchhHHHHHHHHHHcCCc
Q 042869 143 GDCRENGELKSVAAEIVKECAGL 165 (707)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~c~g~ 165 (707)
.......+. ...++++.+.|.
T Consensus 386 ~~~~l~~~~--~l~~la~~t~g~ 406 (489)
T 3hu3_A 386 KNMKLADDV--DLEQVANETHGH 406 (489)
T ss_dssp TTSCBCTTC--CHHHHHHTCTTC
T ss_pred hcCCCcchh--hHHHHHHHccCC
Confidence 432211110 134566677664
No 220
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.41 E-value=0.049 Score=48.99 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+|+.+++...
T Consensus 52 ~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 52 PGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp GGGCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999998753
No 221
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.35 E-value=0.058 Score=48.68 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=61.5
Q ss_pred hhcCCCCccEEEecCC-Cccc-----CCccccccCCCCEEEecCCCCCCc------ccccCCCCCcEEEcCCCchh----
Q 042869 361 FFTGMTELRVLDFTQM-YLLA-----LPSSLGLLQNLQTLSLENCKLGDM------AIIGDLKKLEILTLRGSNMQ---- 424 (707)
Q Consensus 361 ~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~------~~i~~l~~L~~L~l~~~~l~---- 424 (707)
++.+-+.|+.|+++++ .+.. +-..+..=..|+.|+|++|.+.+. ..+..-+.|++|+|++|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455667777777764 4432 333444555777888887777652 23344567777777777654
Q ss_pred -hchHHhhcCcCCCEEcCCCCC--CCcccc----hhhhhCCCCCcEEEccCCC
Q 042869 425 -KLVEEIGRLTQLRLLDLSNCS--KLKVIP----AYVISSLSRLEELYIGESP 470 (707)
Q Consensus 425 -~lp~~i~~l~~L~~L~l~~~~--~~~~~p----~~~~~~l~~L~~L~l~~~~ 470 (707)
.+-..+..-+.|+.|+++++. .++.-. ...+..-+.|..|++..+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233445555667777776532 222111 0123344566666665443
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.17 E-value=0.18 Score=49.64 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=16.3
Q ss_pred ceEEeecCChHHHHHHHHh
Q 042869 122 QNFFVDVLNEKEAWSLFKK 140 (707)
Q Consensus 122 ~~~~l~~L~~~~a~~Lf~~ 140 (707)
..+.+++++.++..+++.+
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 4689999999998888875
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.05 E-value=0.12 Score=58.97 Aligned_cols=125 Identities=12% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCCcHHHHHHHHHHHhhhcc---CC-Cc-EEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhc-CCcE
Q 042869 2 GGIGKTTLVKEVGRQVKENN---LF-EK-VISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKK-EPKI 75 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~---~F-~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~kr~ 75 (707)
+|+||||+|+.+++...... .. +. ++.++++.-.. +. ............+.+.... +++.
T Consensus 200 pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~--~~~g~~~~~l~~~~~~~~~~~~~~ 265 (854)
T 1qvr_A 200 PGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GA--KYRGEFEERLKAVIQEVVQSQGEV 265 (854)
T ss_dssp TTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHHHTTCSSE
T ss_pred CCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cC--ccchHHHHHHHHHHHHHHhcCCCe
Confidence 69999999999998763321 01 22 33333321100 00 0001112233444444443 3579
Q ss_pred EEEEeCCCCcc-------ccc---ccccccCCCCCCeEEEEeeCCccc-----cccccCCcceEEeecCChHHHHHHHHh
Q 042869 76 LIILDDIWGSL-------DLE---AIGIPFADNNSGCKVLLTARSQDV-----LSCKMDCQQNFFVDVLNEKEAWSLFKK 140 (707)
Q Consensus 76 LlVlDdv~~~~-------~~~---~l~~~l~~~~~gs~iivTtr~~~v-----~~~~~~~~~~~~l~~L~~~~a~~Lf~~ 140 (707)
+|++|++.... .++ .+...+ .. .+-.+|.+|..... ......-...+.+++++.++..+++..
T Consensus 266 iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRG 343 (854)
T ss_dssp EEEECCC-------------------HHHH-HT-TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHH
T ss_pred EEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHh
Confidence 99999997542 121 111111 11 23345555543321 111111224689999999999999875
Q ss_pred hh
Q 042869 141 MT 142 (707)
Q Consensus 141 ~~ 142 (707)
..
T Consensus 344 ~~ 345 (854)
T 1qvr_A 344 LK 345 (854)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 224
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.97 E-value=0.14 Score=53.86 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHHHHhhhccC----CCc-EEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNL----FEK-VISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+|||++|+.++........ .+. ++.++++ ....+. .......+++.....++.+
T Consensus 210 pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~~~g~------~e~~~~~~~~~~~~~~~~i 270 (468)
T 3pxg_A 210 PGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TKYRGE------FEDRLKKVMDEIRQAGNII 270 (468)
T ss_dssp TTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------------------CTTHHHHHHHHHTCCCCE
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------ccccch------HHHHHHHHHHHHHhcCCeE
Confidence 699999999999987633210 111 2222322 000000 1112234444454446789
Q ss_pred EEEeCCCCcccccccccccCCCCCCeEEEEeeCCccc------cccccCCcceEEeecCChHHHHHHHHhhh
Q 042869 77 IILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDV------LSCKMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 77 lVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v------~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
|++| ...+....+...+. ...-++|.+|...+. ......-...+.++..+.++..+++...+
T Consensus 271 LfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 271 LFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred EEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 9999 22222222333321 113455555554431 11011122468999999999999998765
No 225
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.89 E-value=0.39 Score=46.84 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||+||+++++...
T Consensus 45 pGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 45 KGQGKSFQCELVFRKMG 61 (293)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999998774
No 226
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.71 E-value=0.083 Score=47.69 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=71.9
Q ss_pred Cccceeeeccc-cccc----cCchhhcCCCCccEEEecCCCccc-----CCccccccCCCCEEEecCCCCCCc------c
Q 042869 342 PQLRFLCIGYH-ASLR----IPSNFFTGMTELRVLDFTQMYLLA-----LPSSLGLLQNLQTLSLENCKLGDM------A 405 (707)
Q Consensus 342 ~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~------~ 405 (707)
+.|+.|+++++ .+.+ .....+..-+.|+.|+|++|.+.. +...+..=..|+.|+|++|.++.. .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 56777888764 4442 122335667889999999998864 344455667899999999998872 3
Q ss_pred cccCCCCCcEEEcCCC---chh-----hchHHhhcCcCCCEEcCCCC
Q 042869 406 IIGDLKKLEILTLRGS---NMQ-----KLVEEIGRLTQLRLLDLSNC 444 (707)
Q Consensus 406 ~i~~l~~L~~L~l~~~---~l~-----~lp~~i~~l~~L~~L~l~~~ 444 (707)
.+..-..|++|+|+++ .+. .+-..+..-+.|+.|+++.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4556677999999864 333 24455667789999998764
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.70 E-value=0.19 Score=46.58 Aligned_cols=35 Identities=23% Similarity=0.103 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQ 41 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 41 (707)
+|+||||+|..+.. . .-..++|++....++...+.
T Consensus 29 ~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 29 YASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred CCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence 69999999999987 1 12457788776655655544
No 228
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.65 E-value=0.53 Score=44.74 Aligned_cols=142 Identities=16% Similarity=0.242 Sum_probs=69.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.++..... ..+.+.. .++ ..... .........+.+........++++|+
T Consensus 58 ~G~GKTtl~~~i~~~~~~-----~~i~~~~------~~~----~~~~~------~~~~~~i~~~~~~~~~~~~~i~~~De 116 (254)
T 1ixz_A 58 PGVGKTHLARAVAGEARV-----PFITASG------SDF----VEMFV------GVGAARVRDLFETAKRHAPCIVFIDE 116 (254)
T ss_dssp TTSSHHHHHHHHHHHTTC-----CEEEEEH------HHH----HHSCT------THHHHHHHHHHHHHTTSSSEEEEEET
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEeeH------HHH----HHHHh------hHHHHHHHHHHHHHHhcCCeEEEehh
Confidence 699999999999986542 2233321 111 11100 00111233444444333468999999
Q ss_pred CCCcc------------c----ccccccccCCCC--CCeEEEEeeCCcccccccc----CCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------D----LEAIGIPFADNN--SGCKVLLTARSQDVLSCKM----DCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~----~~~l~~~l~~~~--~gs~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
+.... . ...+...+.... ....++.||...++..... .-...+.++..+.++-.+++.
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 117 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 196 (254)
T ss_dssp HHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred hhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHH
Confidence 94220 0 112222221111 2234444666555542111 233467888888888888887
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
..+.+....++. ....+++.+.|.-
T Consensus 197 ~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 197 IHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 665322111110 1234666666653
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.60 E-value=0.18 Score=56.06 Aligned_cols=140 Identities=11% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||+||+++++..... .+.++.+ + +... ..+.....+..+++.-......+|+||+
T Consensus 247 PGTGKT~LAraiA~elg~~-----~~~v~~~------~----l~sk------~~gese~~lr~lF~~A~~~~PsIIfIDE 305 (806)
T 3cf2_A 247 PGTGKTLIARAVANETGAF-----FFLINGP------E----IMSK------LAGESESNLRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp TTSCHHHHHHHHHTTTTCE-----EEEEEHH------H----HHSS------CTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CCCCHHHHHHHHHHHhCCe-----EEEEEhH------H----hhcc------cchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence 6999999999999865432 2333322 1 1111 0111223344555555555789999999
Q ss_pred CCCcc--------c-----ccccccccCC--CCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSL--------D-----LEAIGIPFAD--NNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~--------~-----~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
++..- + ..++...+.. ...+-.||.||...+..... ..-...+++...+.++-.++|..+.
T Consensus 306 iDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp GGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred hcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 97431 0 1111111111 11233445555554433111 1234578889899999899998776
Q ss_pred cCCC--CCchhHHHHHHHHHHcCCcc
Q 042869 143 GDCR--ENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 143 ~~~~--~~~~~~~~~~~i~~~c~g~P 166 (707)
.... ...+ ...+++++.|.-
T Consensus 386 ~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 386 KNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp SSSEECTTCC----HHHHHHHCCSCC
T ss_pred cCCCCCcccC----HHHHHHhcCCCC
Confidence 4321 1222 455777887764
No 230
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.34 E-value=0.057 Score=52.65 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEe--cCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRV--SQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILII 78 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlV 78 (707)
.+|+||||||.++... . -..+.|+++ .+..+.. . .........+.+.+.+ .+ +||
T Consensus 131 pPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v~~~----------~------~~le~~l~~i~~~l~~-~~-LLV 187 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPLSGY----------N------TDFNVFVDDIARAMLQ-HR-VIV 187 (331)
T ss_dssp SCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSSTTC----------B------CCHHHHHHHHHHHHHH-CS-EEE
T ss_pred CCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhhhhh----------h------cCHHHHHHHHHHHHhh-CC-EEE
Confidence 4799999999999876 1 123456666 2221110 0 1122334445555655 34 999
Q ss_pred EeCCCCc
Q 042869 79 LDDIWGS 85 (707)
Q Consensus 79 lDdv~~~ 85 (707)
+|++...
T Consensus 188 IDsI~aL 194 (331)
T 2vhj_A 188 IDSLKNV 194 (331)
T ss_dssp EECCTTT
T ss_pred Eeccccc
Confidence 9998653
No 231
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.31 E-value=0.14 Score=43.00 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=22.9
Q ss_pred EEEecCCCcc--cCCccccccCCCCEEEecCCCCCC--cccccCCCCCcEEEcCCC
Q 042869 370 VLDFTQMYLL--ALPSSLGLLQNLQTLSLENCKLGD--MAIIGDLKKLEILTLRGS 421 (707)
Q Consensus 370 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~ 421 (707)
+++.+++.++ .+|..+ -.+|++|+|++|.++. ...+..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444 444332 1234555555555444 123444555555555554
No 232
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.17 E-value=0.036 Score=47.91 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS 32 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 32 (707)
.|+|||||++.++...... .+ .++++...
T Consensus 45 ~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQALEA-GK-NAAYIDAA 73 (149)
T ss_dssp STTTTCHHHHHHHHHHHTT-TC-CEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhc-CC-cEEEEcHH
Confidence 5999999999999876542 11 25566544
No 233
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.03 E-value=0.029 Score=55.38 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||+||+++++...
T Consensus 161 ~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 161 MGIGKSYLLAAMAHELS 177 (308)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999999766
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.01 E-value=0.36 Score=46.87 Aligned_cols=79 Identities=6% Similarity=0.007 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc----chhhHHH-HHHHHHH---hcCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ----SHETVRA-GRLLERL---KKEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~-~~~~~~l---~~~k 73 (707)
+|+||||||.+++.....+..=..++|++....++.. .+++++.+...- ....+.+ ..+.+.+ .+++
T Consensus 37 pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~ 111 (333)
T 3io5_A 37 SKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGE 111 (333)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccC
Confidence 6999999998877655432112458899887777753 266666543211 1111222 2333443 4556
Q ss_pred cEEEEEeCCCCc
Q 042869 74 KILIILDDIWGS 85 (707)
Q Consensus 74 r~LlVlDdv~~~ 85 (707)
.-+||+|-|...
T Consensus 112 ~~lvVIDSI~aL 123 (333)
T 3io5_A 112 KVVVFIDSLGNL 123 (333)
T ss_dssp CEEEEEECSTTC
T ss_pred ceEEEEeccccc
Confidence 789999999654
No 235
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.95 E-value=0.42 Score=44.95 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhchhhh---------hcchhh---HHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGLELA---------EQSHET---VRAGRL 65 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~---~~~~~~ 65 (707)
+|+||||||+.+........ .-..++|++....+....+. ++++.++.... ...... .....+
T Consensus 33 ~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (243)
T 1n0w_A 33 FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQA 111 (243)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHH
Confidence 69999999999987532211 12468888877655554443 34444443221 000011 112234
Q ss_pred HHHHhcCCcEEEEEeCCCC
Q 042869 66 LERLKKEPKILIILDDIWG 84 (707)
Q Consensus 66 ~~~l~~~kr~LlVlDdv~~ 84 (707)
.+.+...+.-+||+|.+..
T Consensus 112 ~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 112 SAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHSCEEEEEEETSSG
T ss_pred HHHHhcCCceEEEEeCchH
Confidence 4444444577899998764
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.73 E-value=0.87 Score=43.77 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=63.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.++..... ..+.+....-.+. . .......+..+.+........++++|+
T Consensus 53 ~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~--~~~~~~~i~~vf~~a~~~~p~i~~~De 111 (274)
T 2x8a_A 53 PGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------Y--VGESERAVRQVFQRAKNSAPCVIFFDE 111 (274)
T ss_dssp TTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------T--THHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------h--hhHHHHHHHHHHHHHHhcCCCeEeeeh
Confidence 699999999999986543 2344443221110 0 000111233344433233578999999
Q ss_pred CCCccc---------cc----ccccccCC--CCCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSLD---------LE----AIGIPFAD--NNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~~---------~~----~l~~~l~~--~~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
+..... .. .+...+.. .....-++.+|...++.... ..-...+.++..+.++-.++|....
T Consensus 112 id~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 112 VDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 974210 00 11111111 12234555667666655211 1334577888888888888888765
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.64 E-value=0.94 Score=43.67 Aligned_cols=142 Identities=17% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.++..... ..+.+... ++. .... .........+.+........++|+|+
T Consensus 82 ~GtGKTtl~~~i~~~~~~-----~~i~~~~~------~~~----~~~~------~~~~~~i~~~~~~~~~~~~~i~~iDe 140 (278)
T 1iy2_A 82 PGVGKTHLARAVAGEARV-----PFITASGS------DFV----EMFV------GVGAARVRDLFETAKRHAPCIVFIDE 140 (278)
T ss_dssp TTSSHHHHHHHHHHHTTC-----CEEEEEHH------HHH----HSTT------THHHHHHHHHHHHHHTSCSEEEEEET
T ss_pred CcChHHHHHHHHHHHcCC-----CEEEecHH------HHH----HHHh------hHHHHHHHHHHHHHHhcCCcEEehhh
Confidence 699999999999986542 22333211 111 1100 00111233344444333468999999
Q ss_pred CCCc------------cc----ccccccccCCCC--CCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGS------------LD----LEAIGIPFADNN--SGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~------------~~----~~~l~~~l~~~~--~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
+... .. ...+...+.... ....++.||...++.... ......+.++..+.++-.+++.
T Consensus 141 id~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~ 220 (278)
T 1iy2_A 141 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 220 (278)
T ss_dssp HHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred hHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHH
Confidence 9521 01 111211222111 123444466655544211 1234478888888888888887
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
..+......++. ....+++.+.|..
T Consensus 221 ~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 221 IHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHccCCCCccc--CHHHHHHHcCCCC
Confidence 665322111111 1334666776654
No 238
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.62 E-value=0.25 Score=44.38 Aligned_cols=104 Identities=16% Similarity=0.087 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC---CcCHHHHHHHHHHHhc---------hh--hhh----cchhhHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ---TPQIKNIQGEIAEKIG---------LE--LAE----QSHETVRAG 63 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~---------~~--~~~----~~~~~~~~~ 63 (707)
.|.||||.|-.+.-+-..+ -+ .+..+...+ ......+++ .++ .. ... .........
T Consensus 37 ~GkGKTTaA~GlalRA~g~-G~-rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~ 110 (196)
T 1g5t_A 37 NGKGKTTAAFGTAARAVGH-GK-NVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREADTAACMAVWQ 110 (196)
T ss_dssp SSSCHHHHHHHHHHHHHHT-TC-CEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC-CC-eEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHHHHHHHHHHH
Confidence 4899999998887765543 12 233343322 122333333 332 00 000 000122334
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc-----ccccccccccCCCCCCeEEEEeeCCc
Q 042869 64 RLLERLKKEPKILIILDDIWGS-----LDLEAIGIPFADNNSGCKVLLTARSQ 111 (707)
Q Consensus 64 ~~~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~ 111 (707)
.+.+.+..++-=|||||++-.. ...+++...+..-....-||+|+|..
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4555555555559999998432 22233333333333466799999995
No 239
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.59 E-value=0.19 Score=42.15 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=31.5
Q ss_pred eeeecccccc--ccCchhhcCCCCccEEEecCCCcccCCcc-ccccCCCCEEEecCCCC
Q 042869 346 FLCIGYHASL--RIPSNFFTGMTELRVLDFTQMYLLALPSS-LGLLQNLQTLSLENCKL 401 (707)
Q Consensus 346 ~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 401 (707)
.++.+++... .+|..+ -.+|++|+|++|.++.+|.. +..+.+|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3444444444 455332 23567777777777776543 46677777777777764
No 240
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.54 E-value=0.27 Score=50.76 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhhH-----HHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHETV-----RAGRLLER 68 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-----~~~~~~~~ 68 (707)
+|+||||||+.+......+ .-+.++++-+.+.. ...++.+++.+.-.. ....+..... ..-.+.++
T Consensus 160 sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEy 238 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEY 238 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999876654 23456666666554 345565555432100 0000000000 11234455
Q ss_pred Hh--cCCcEEEEEeCCC
Q 042869 69 LK--KEPKILIILDDIW 83 (707)
Q Consensus 69 l~--~~kr~LlVlDdv~ 83 (707)
+. .|+++|+++||+.
T Consensus 239 Frd~~G~~VLl~~D~it 255 (473)
T 1sky_E 239 FRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHSCCEEEEEEECTH
T ss_pred HHHhcCCcEEEEeccHH
Confidence 54 3789999999994
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.42 E-value=0.35 Score=47.94 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHHHhhhcc---------CC-----CcEEEEEecCCcCHHHHHHHHHHHhchhhhh--------c-chh
Q 042869 2 GGIGKTTLVKEVGRQVKENN---------LF-----EKVISSRVSQTPQIKNIQGEIAEKIGLELAE--------Q-SHE 58 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--------~-~~~ 58 (707)
+|+||||+|.+++....... .. ..++|++....++...+.+ +++.++.+... . ...
T Consensus 107 ~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 185 (322)
T 2i1q_A 107 FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTFVARAYNS 185 (322)
T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEEEEECSSH
T ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEEEEeCCCH
Confidence 69999999998886532110 11 4688999888777776664 34555443210 0 001
Q ss_pred h---HHHHHHHHHHhc-CCcEEEEEeCCC
Q 042869 59 T---VRAGRLLERLKK-EPKILIILDDIW 83 (707)
Q Consensus 59 ~---~~~~~~~~~l~~-~kr~LlVlDdv~ 83 (707)
. +....+.+.+.+ .+--+||+|.+.
T Consensus 186 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 186 DMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1 122333444443 345688888875
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.40 E-value=0.42 Score=47.42 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHhhhccC----CCcEEEEEecCCcCHHHHHHHHHHHhchhhhh---------cchhh---HHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNL----FEKVISSRVSQTPQIKNIQGEIAEKIGLELAE---------QSHET---VRAGRL 65 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~~---~~~~~~ 65 (707)
+|+||||+|.+++........ -..++|++....++...+.+ +++.++.+... ..... +....+
T Consensus 116 ~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l 194 (324)
T 2z43_A 116 FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDL 194 (324)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHH
Confidence 699999999998875432111 23588998888777766653 44555443211 00011 123334
Q ss_pred HHHHhc-CCcEEEEEeCCCC
Q 042869 66 LERLKK-EPKILIILDDIWG 84 (707)
Q Consensus 66 ~~~l~~-~kr~LlVlDdv~~ 84 (707)
.+.+.+ .+--+||+|.+..
T Consensus 195 ~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 195 QELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHhccCCCEEEEeCcHH
Confidence 444443 4567889998753
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.07 E-value=0.089 Score=59.31 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+++++..... -...+.++++.-....... ...+.+.......-.|+||+
T Consensus 530 ~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~--------------------~~~l~~~~~~~~~~vl~lDE 587 (758)
T 3pxi_A 530 TGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTS--------------------GGQLTEKVRRKPYSVVLLDA 587 (758)
T ss_dssp TTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC-----------------------CHHHHHHCSSSEEEEEC
T ss_pred CCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccccc--------------------cchhhHHHHhCCCeEEEEeC
Confidence 6999999999999876322 2334555554322110000 01111222222345899999
Q ss_pred CCCcc--cccccccccC-----C------CCCCeEEEEeeCCccc------------c-c-cccCCcceEEeecCChHHH
Q 042869 82 IWGSL--DLEAIGIPFA-----D------NNSGCKVLLTARSQDV------------L-S-CKMDCQQNFFVDVLNEKEA 134 (707)
Q Consensus 82 v~~~~--~~~~l~~~l~-----~------~~~gs~iivTtr~~~v------------~-~-~~~~~~~~~~l~~L~~~~a 134 (707)
+.... ..+.+...+. . .....+||.||....- . . ........+.+.+++.++-
T Consensus 588 i~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~ 667 (758)
T 3pxi_A 588 IEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL 667 (758)
T ss_dssp GGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHH
T ss_pred ccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHH
Confidence 97542 1122211111 0 1135678888873110 0 0 0112235888999999988
Q ss_pred HHHHHhhh
Q 042869 135 WSLFKKMT 142 (707)
Q Consensus 135 ~~Lf~~~~ 142 (707)
..++....
T Consensus 668 ~~i~~~~l 675 (758)
T 3pxi_A 668 TEIVSLMS 675 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.06 E-value=0.35 Score=51.83 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+|+.++....
T Consensus 117 ~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 117 PGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SSSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 69999999999998763
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.99 E-value=0.63 Score=46.52 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhch
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGL 50 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 50 (707)
+|+||||||..++....... .-..++|++....++...+.+ +++.++.
T Consensus 131 ~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 69999999999887632211 124688999888777766543 3445544
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.86 E-value=0.26 Score=46.10 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGE 43 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 43 (707)
+|+|||||++.+....... -..+.|+.... ...++...
T Consensus 32 ~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 6999999999998665432 23456665433 34444443
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.51 E-value=0.58 Score=46.68 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhh-----cchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAE-----QSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||||.+++...... =..++|++....++.. .+++++..... .....+....+......++.-+
T Consensus 70 pGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 70 ESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 6999999999998776542 2357788877666654 44555443211 1111222222222223344568
Q ss_pred EEEeCCCCc
Q 042869 77 IILDDIWGS 85 (707)
Q Consensus 77 lVlDdv~~~ 85 (707)
+|+|.+...
T Consensus 143 vVIDSi~~l 151 (356)
T 3hr8_A 143 IVVDSVAAL 151 (356)
T ss_dssp EEEECTTTC
T ss_pred EEehHhhhh
Confidence 999998543
No 248
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.46 E-value=0.65 Score=47.80 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh-------------hhhcchh-----hHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE-------------LAEQSHE-----TVRA 62 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------------~~~~~~~-----~~~~ 62 (707)
+|+|||+|+..+.+..... +-+.++++-+.+.. .+.++.+++.+.-..+ ...++.. ....
T Consensus 162 ~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a 240 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTG 240 (482)
T ss_dssp TTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHH
Confidence 6999999999999876432 34667777777654 4667777776642211 0011100 0122
Q ss_pred HHHHHHHh--cCCcEEEEEeCCC
Q 042869 63 GRLLERLK--KEPKILIILDDIW 83 (707)
Q Consensus 63 ~~~~~~l~--~~kr~LlVlDdv~ 83 (707)
-.+.+++. .|+.+||++||+.
T Consensus 241 ~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 241 LTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHhcCCcEEEEeccHH
Confidence 23455555 3789999999985
No 249
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.32 E-value=0.58 Score=48.42 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchh--------------hhhcch-----hhHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLE--------------LAEQSH-----ETVR 61 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------------~~~~~~-----~~~~ 61 (707)
+|+|||+|+..+.+..... +-+.++++-+.+.. ...++.+++.+.-..+ ...++. ....
T Consensus 174 ~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~ 252 (498)
T 1fx0_B 174 AGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT 252 (498)
T ss_dssp SSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHH
T ss_pred CCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999876432 35778888777655 5677888877542111 000000 0112
Q ss_pred HHHHHHHHhc--CCcEEEEEeCCC
Q 042869 62 AGRLLERLKK--EPKILIILDDIW 83 (707)
Q Consensus 62 ~~~~~~~l~~--~kr~LlVlDdv~ 83 (707)
.-.+.+++.. |+.+|+++||+.
T Consensus 253 altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 253 ALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 2335566654 789999999984
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.23 E-value=0.87 Score=47.84 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||++++..... ..+.++.+.-... . ..........+++........++++|+
T Consensus 73 pGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~--------------~--~g~~~~~v~~lfq~a~~~~p~il~IDE 131 (499)
T 2dhr_A 73 PGVGKTHLARAVAGEARV-----PFITASGSDFVEM--------------F--VGVGAARVRDLFETAKRHAPCIVFIDE 131 (499)
T ss_dssp SSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS--------------C--TTHHHHHHHHHTTTSSSSSSCEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh--------------h--hhhHHHHHHHHHHHHHhcCCCEEEEeh
Confidence 699999999999986532 2334443221100 0 000011122222222112357999999
Q ss_pred CCCcc------------c----ccccccccCCC--CCCeEEEEeeCCccccccc----cCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL------------D----LEAIGIPFADN--NSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~------------~----~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++... + ...+...+..+ ..+..|+.||...++.... ......+.++..+.++-.+++.
T Consensus 132 Id~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~ 211 (499)
T 2dhr_A 132 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 211 (499)
T ss_dssp GGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred HHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHH
Confidence 95321 0 11222222211 1234455556555543211 1223478888889888888888
Q ss_pred hhhcCCCCCchhHHHHHHHHHHcCCcc
Q 042869 140 KMTGDCRENGELKSVAAEIVKECAGLP 166 (707)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 166 (707)
.++......++. ....+++.+.|..
T Consensus 212 ~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 212 IHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp HTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred HHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 766432111111 1345677777765
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.03 E-value=0.64 Score=46.75 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhh----cchhhHHHHHHHHHHh-cCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAE----QSHETVRAGRLLERLK-KEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~~l~-~~kr~L 76 (707)
+|+||||||.++....... -..++|++....++.. .++.++.+... .....+......+.+. .++--+
T Consensus 83 pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 6999999999888765433 2468899887766643 24444443210 0011122223333333 334569
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|.+..
T Consensus 156 VVIDsl~~ 163 (366)
T 1xp8_A 156 VVVDSVAA 163 (366)
T ss_dssp EEEECTTT
T ss_pred EEEeChHH
Confidence 99999864
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.01 E-value=0.35 Score=54.42 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcE-EEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKV-ISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~-~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+|||++|+.+++...... ..+.. +.++. +... .+.-......+.+.....++.+
T Consensus 210 pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~--~G~~e~~l~~~~~~~~~~~~~i 270 (758)
T 3pxi_A 210 PGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKY--RGEFEDRLKKVMDEIRQAGNII 270 (758)
T ss_dssp TTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------------------CTTHHHHHHHHHTCCCCE
T ss_pred CCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccc--cchHHHHHHHHHHHHHhcCCEE
Confidence 79999999999998753211 01221 11221 0000 0001112334444444456789
Q ss_pred EEEeCCCCcccccccccccCCCCCCeEEEEeeCCccc------cccccCCcceEEeecCChHHHHHHHHhhh
Q 042869 77 IILDDIWGSLDLEAIGIPFADNNSGCKVLLTARSQDV------LSCKMDCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 77 lVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v------~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
|++| ...+....+...+ . ...-++|.||...+. -.....-...+.++..+.++..+++....
T Consensus 271 LfiD--~~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 271 LFID--AAIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EEEC--C--------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred EEEc--CchhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 9999 2222222233232 1 223456666655441 10001112468999999999999998655
No 253
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.86 E-value=0.2 Score=49.99 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHHHhhhc-cCCCcEEEEEecCCc-CHHHHHHHHHHHhchhhhhcchhh-----HHHHHHHHHHh-cCC
Q 042869 2 GGIGKTTLVKEVGRQVKEN-NLFEKVISSRVSQTP-QIKNIQGEIAEKIGLELAEQSHET-----VRAGRLLERLK-KEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~l~-~~k 73 (707)
+|+|||||++.+.+..... ..++ ++++-+.+.. .+.++.+.+-..+-.....++... ...-.+.+++. .|+
T Consensus 183 sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~ 261 (422)
T 3ice_A 183 PKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 261 (422)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999998765432 1233 3345566543 233333322000000111111000 11112233333 478
Q ss_pred cEEEEEeCCCC
Q 042869 74 KILIILDDIWG 84 (707)
Q Consensus 74 r~LlVlDdv~~ 84 (707)
.+||++||+..
T Consensus 262 dVLil~DslTR 272 (422)
T 3ice_A 262 DVIILLDSITR 272 (422)
T ss_dssp EEEEEEECHHH
T ss_pred CEEEEEeCchH
Confidence 99999999854
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.75 E-value=0.25 Score=43.79 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHH
Q 042869 1 MGGIGKTTLVKEV 13 (707)
Q Consensus 1 mgGiGKTtLa~~v 13 (707)
++|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5799999999999
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.60 E-value=0.72 Score=46.18 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc----chhhHHHHHHHHHHh-cCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ----SHETVRAGRLLERLK-KEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~~l~-~~kr~L 76 (707)
+|+||||||.++....... -..++|++....++.. .++.++.+...- ....+....+.+.+. .++--+
T Consensus 72 pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 7999999999888765433 2368889887766643 234444332110 001122223333332 234558
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|.+..
T Consensus 145 VVIDsl~~ 152 (356)
T 1u94_A 145 IVVDSVAA 152 (356)
T ss_dssp EEEECGGG
T ss_pred EEEcCHHH
Confidence 99999853
No 256
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.53 E-value=1.2 Score=44.33 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=35.6
Q ss_pred eEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHcCCcchHHHHH
Q 042869 123 NFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKECAGLPIAIVPI 172 (707)
Q Consensus 123 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 172 (707)
.+.+++.+.++-.+++.+.+..... .-..+.+..|++.++|.|-.+..+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 5789999999999999887642111 122456889999999999765444
No 257
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.53 E-value=0.035 Score=47.70 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+|||++|+++++..
T Consensus 36 ~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 36 AGSPFETVARYFHKNG 51 (143)
T ss_dssp TTCCHHHHHGGGCCTT
T ss_pred CCccHHHHHHHHHHhC
Confidence 6999999999997653
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.99 E-value=0.9 Score=45.40 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc----chhhHHHHHHHHHHh-cCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ----SHETVRAGRLLERLK-KEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~~l~-~~kr~L 76 (707)
+|+||||||.++....... =..++|++....++.. .++.++.+.... ....+....+.+.+. ..+.-+
T Consensus 70 pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 70 ESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 6999999999988765432 2457888887766543 244555332110 001122223333333 334569
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|.+..
T Consensus 143 IVIDsl~~ 150 (349)
T 2zr9_A 143 IVIDSVAA 150 (349)
T ss_dssp EEEECGGG
T ss_pred EEEcChHh
Confidence 99999864
No 259
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.96 E-value=0.58 Score=47.88 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHHhhhcc-CCC-cEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchh-----hHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENN-LFE-KVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHE-----TVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~~~~~~ 66 (707)
+|+|||+|+..+.+...... +=+ .++++-+.+.. .+.++.+++.+.-.. ....++.. ....-.+.
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiA 239 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAA 239 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 59999999999988754321 111 45666666543 566777776553100 11111101 11223456
Q ss_pred HHHh--cCCcEEEEEeCCC
Q 042869 67 ERLK--KEPKILIILDDIW 83 (707)
Q Consensus 67 ~~l~--~~kr~LlVlDdv~ 83 (707)
+++. .|+.+|+++||+.
T Consensus 240 Eyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 240 EYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHTTCCEEEEEEECHH
T ss_pred HHHHHhcCCeEEEEEcChH
Confidence 6666 3799999999985
No 260
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.83 E-value=1.2 Score=45.26 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEEEecCCcCHHHHHHHHHHHhchhhhh---------cch---hhHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISSRVSQTPQIKNIQGEIAEKIGLELAE---------QSH---ETVRAGRL 65 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~---~~~~~~~~ 65 (707)
+|+|||||+..++-...... .-..++|++....+....+ +.+++.++..... ... .......+
T Consensus 187 sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~ 265 (400)
T 3lda_A 187 FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAA 265 (400)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHH
Confidence 69999999997763322111 1345888887766665544 3355555543210 000 11222333
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 042869 66 LERLKKEPKILIILDDIW 83 (707)
Q Consensus 66 ~~~l~~~kr~LlVlDdv~ 83 (707)
.+.+...+.-+||+|.+.
T Consensus 266 ~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 266 AQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHSCEEEEEEETGG
T ss_pred HHHHHhcCCceEEecchh
Confidence 444444456788889874
No 261
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.60 E-value=0.57 Score=47.93 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCcHHHHHHHHHHHhhhc--------cCCC-cEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchh-----h
Q 042869 2 GGIGKTTLVKEVGRQVKEN--------NLFE-KVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHE-----T 59 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~-----~ 59 (707)
+|+|||+|+..+.+..... .+=+ .++++-+.+.. .+.++.+++.+.-.. ....++.. .
T Consensus 156 ~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~ 235 (464)
T 3gqb_B 156 SGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTP 235 (464)
T ss_dssp TTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHH
Confidence 5999999999998875431 1122 45566666543 466777766543100 01111101 1
Q ss_pred HHHHHHHHHHh--cCCcEEEEEeCCC
Q 042869 60 VRAGRLLERLK--KEPKILIILDDIW 83 (707)
Q Consensus 60 ~~~~~~~~~l~--~~kr~LlVlDdv~ 83 (707)
...-.+.+++. .|+.+|+++||+.
T Consensus 236 ~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 236 RMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12234566666 3789999999985
No 262
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.45 E-value=1.2 Score=50.20 Aligned_cols=126 Identities=13% Similarity=0.233 Sum_probs=63.8
Q ss_pred CCCcHHHHHHHHHHHhhhcc----CCCcEEEE-EecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENN----LFEKVISS-RVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv-~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||+|+.++....... ..+..++. +++. + +.. ....+........+.+.+...++.+
T Consensus 216 ~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l-------~~~-~~~~g~~e~~l~~~~~~~~~~~~~i 281 (758)
T 1r6b_X 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L-------LAG-TKYRGDFEKRFKALLKQLEQDTNSI 281 (758)
T ss_dssp TTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CC-CCCSSCHHHHHHHHHHHHSSSSCEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H-------hcc-ccccchHHHHHHHHHHHHHhcCCeE
Confidence 69999999999998653221 12333332 1111 0 000 0011112223444555555445799
Q ss_pred EEEeCCCCcc--------c--ccccccccCCCCCCeEEEEeeCCccccc------cccCCcceEEeecCChHHHHHHHHh
Q 042869 77 IILDDIWGSL--------D--LEAIGIPFADNNSGCKVLLTARSQDVLS------CKMDCQQNFFVDVLNEKEAWSLFKK 140 (707)
Q Consensus 77 lVlDdv~~~~--------~--~~~l~~~l~~~~~gs~iivTtr~~~v~~------~~~~~~~~~~l~~L~~~~a~~Lf~~ 140 (707)
|++|++.... . ...+...+.. ..+-++|.+|...+... ....-...+.++..+.++..+++..
T Consensus 282 L~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~ 360 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING 360 (758)
T ss_dssp EEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHH
T ss_pred EEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHH
Confidence 9999997541 1 1111122212 22446666665433210 0011123688999999998888876
Q ss_pred hh
Q 042869 141 MT 142 (707)
Q Consensus 141 ~~ 142 (707)
..
T Consensus 361 l~ 362 (758)
T 1r6b_X 361 LK 362 (758)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 263
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.26 E-value=0.63 Score=47.91 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHHhhhccC--CCcEEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcch-----hhHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNL--FEKVISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSH-----ETVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~-----~~~~~~~~~ 66 (707)
+|+|||+|+..++++....+. =+.++++-+.+.. .+.++.+++.+.-.. ....++. .....-.+.
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiA 240 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999999999987654211 1346666666544 466777777653111 0111110 011223345
Q ss_pred HHHh--cCCcEEEEEeCCC
Q 042869 67 ERLK--KEPKILIILDDIW 83 (707)
Q Consensus 67 ~~l~--~~kr~LlVlDdv~ 83 (707)
+++. .|+.+|+++||+.
T Consensus 241 Eyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 241 EYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHCCEEEEEEECHH
T ss_pred HHHHHhcCCeEEEEEeCHH
Confidence 5665 4799999999974
No 264
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.18 E-value=2.9 Score=41.57 Aligned_cols=99 Identities=4% Similarity=-0.117 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCCC-c--ccccccccccCCCCCCeEEEEeeCCc-------cccccccCCcceEEeecCChHHHHHHHHhh
Q 042869 72 EPKILIILDDIWG-S--LDLEAIGIPFADNNSGCKVLLTARSQ-------DVLSCKMDCQQNFFVDVLNEKEAWSLFKKM 141 (707)
Q Consensus 72 ~kr~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~iivTtr~~-------~v~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 141 (707)
+.+-++|+|++.. . +.++.+...+.....++.+|++|... .+..........++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 3567889999865 2 45566655554344577787777542 222211233467899999999988888776
Q ss_pred hcCCCCCchhHHHHHHHHHHcCCcchHHHH
Q 042869 142 TGDCRENGELKSVAAEIVKECAGLPIAIVP 171 (707)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 171 (707)
+..... .-..+.+..+++.++|.+.++..
T Consensus 155 ~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL-ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC-EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC-CCCHHHHHHHHHHhchHHHHHHH
Confidence 642211 11235577888889998876654
No 265
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.61 E-value=1.2 Score=46.50 Aligned_cols=49 Identities=6% Similarity=-0.150 Sum_probs=32.4
Q ss_pred eEEeecCChHHHHHHHHhhhcCCCCCchhHHHHHHHHHHc-CCcchHHHHH
Q 042869 123 NFFVDVLNEKEAWSLFKKMTGDCRENGELKSVAAEIVKEC-AGLPIAIVPI 172 (707)
Q Consensus 123 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c-~g~Plai~~~ 172 (707)
.+.+.+++.++..+.+...+..... .-..+....|++.+ .|.|..+..+
T Consensus 360 ~~~~~~~~~~e~~~iL~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 360 IIRTMLYTPQEMKQIIKIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred eeeCCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 5789999999999999877631111 11234567777777 7877654443
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.53 E-value=1.3 Score=43.59 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK 47 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 47 (707)
+|+||||+|..++.....+. ..++|++.. .+..++...++..
T Consensus 77 pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 79999999999987665432 457776654 5677777777654
No 267
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.45 E-value=0.15 Score=49.03 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ 33 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 33 (707)
+|+|||++|+.+++..... -...+.++++.
T Consensus 38 ~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 38 RGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp TTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred CCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 6999999999998764322 11234455554
No 268
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.27 E-value=0.44 Score=53.65 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+|||++|+.+.+..
T Consensus 497 ~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 497 TGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHh
Confidence 6999999999999876
No 269
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.07 E-value=3.1 Score=38.41 Aligned_cols=36 Identities=28% Similarity=0.170 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHHHhhhc---c-CCCcEEEEEecCCcCH
Q 042869 2 GGIGKTTLVKEVGRQVKEN---N-LFEKVISSRVSQTPQI 37 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~s~~~~~ 37 (707)
.|+|||||++.++...... . .-..++|+........
T Consensus 34 nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 34 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 6999999999998743321 1 1344778776554443
No 270
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=85.91 E-value=0.26 Score=49.13 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCc-EEEEEecCCcC-HHHHHHHHHHHhchhhhhcchhh-----HHHHHHHHHHh-cCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEK-VISSRVSQTPQ-IKNIQGEIAEKIGLELAEQSHET-----VRAGRLLERLK-KEP 73 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~l~-~~k 73 (707)
+|+|||+|++.+.+..... +-++ ++++-+.+... +.++.+++...+-.....++... ...-.+.+++. .|+
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEyfrd~G~ 262 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAEN-HPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNY 262 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999876532 2232 34455554331 22222222100100111111000 11122334443 478
Q ss_pred cEEEEEeCCCC
Q 042869 74 KILIILDDIWG 84 (707)
Q Consensus 74 r~LlVlDdv~~ 84 (707)
.+||++||+..
T Consensus 263 dVLil~DslTR 273 (427)
T 3l0o_A 263 DVVILLDSLTR 273 (427)
T ss_dssp EEEEEEECHHH
T ss_pred CEEEecccchH
Confidence 99999999853
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=85.32 E-value=0.37 Score=42.80 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999987653
No 272
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=84.63 E-value=1.6 Score=45.77 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcC-HHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQ-IKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 44 (707)
.|+|||+|+..+.+.. +-+.++++-+.+..+ +.++.+++
T Consensus 236 ~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 5899999999987652 246778887776654 55666665
No 273
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.24 E-value=3.2 Score=37.39 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
-|+||||.++.+++....+
T Consensus 9 DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 4999999999999887654
No 274
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.44 E-value=3.5 Score=40.71 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKI 48 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 48 (707)
+|+||||+|..++...... =..++|++ -+.+..++...++...
T Consensus 55 pG~GKTt~al~ia~~~a~~--g~~Vl~fS--lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALND--DRGVAVFS--LEMSAEQLALRALSDL 97 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHT--TCEEEEEE--SSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEe--CCCCHHHHHHHHHHHh
Confidence 7999999999998876542 23455654 4566777777776543
No 275
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.12 E-value=4.1 Score=40.61 Aligned_cols=46 Identities=28% Similarity=0.174 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCC----CcEEEEEecCCcCHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQVKENNLF----EKVISSRVSQTPQIKNIQGEIAEKI 48 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l 48 (707)
.|+|||||+..++......... ..++|++....+....+ ..+++..
T Consensus 140 ~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 140 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 6999999999998765211111 23588887665543333 3344443
No 276
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=83.12 E-value=1.8 Score=44.84 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCc-EEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhh-----HHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEK-VISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHET-----VRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~~~~~~ 66 (707)
+|+|||+|| ..+.+.. .-+. ++++-+.+.. .+.++.+++.+.-.. ....++... ...-.+.
T Consensus 184 ~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 259 (515)
T 2r9v_A 184 RQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMG 259 (515)
T ss_dssp TTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999996 5777654 2453 4666666654 466777777653111 111111011 1122344
Q ss_pred HHHh-cCCcEEEEEeCCCC
Q 042869 67 ERLK-KEPKILIILDDIWG 84 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~ 84 (707)
+++. .|+.+||++||+..
T Consensus 260 Eyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 260 EYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHTTTCEEEEEEETHHH
T ss_pred HHHHHcCCcEEEEeccHHH
Confidence 4454 47899999999853
No 277
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=82.91 E-value=2 Score=44.45 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=44.3
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCc-EEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhhH-----HHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEK-VISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHETV-----RAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-----~~~~~~ 66 (707)
+|+|||+|| ..+.+.. .-+. ++++-+.+.. .+.++.+++.+.-.. ....++.... ..-.+-
T Consensus 171 ~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (502)
T 2qe7_A 171 RQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMG 246 (502)
T ss_dssp SSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 589999996 5777654 2453 4666666654 466777777653211 1111110111 112344
Q ss_pred HHHh-cCCcEEEEEeCCC
Q 042869 67 ERLK-KEPKILIILDDIW 83 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~ 83 (707)
+++. .|+.+||++||+.
T Consensus 247 Eyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 247 EYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHTTTCEEEEEEECHH
T ss_pred HHHHHcCCcEEEEEecHH
Confidence 4444 4789999999985
No 278
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=82.34 E-value=2.6 Score=43.80 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=46.2
Q ss_pred CCCcHHHHH-HHHHHHhhh----ccCCCc-EEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhh-----HHH
Q 042869 2 GGIGKTTLV-KEVGRQVKE----NNLFEK-VISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHET-----VRA 62 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~----~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~~ 62 (707)
+|+|||+|| ..+.+.... .++-+. ++++-+.+.. .+.++.+++.+.-.. ....++... ...
T Consensus 171 ~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a 250 (510)
T 2ck3_A 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250 (510)
T ss_dssp TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHH
Confidence 599999995 566665542 122443 6677677654 466777777653211 111111011 112
Q ss_pred HHHHHHHh-cCCcEEEEEeCCCC
Q 042869 63 GRLLERLK-KEPKILIILDDIWG 84 (707)
Q Consensus 63 ~~~~~~l~-~~kr~LlVlDdv~~ 84 (707)
-.+-+++. .|+.+||++||+..
T Consensus 251 ~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 251 CSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHcCCcEEEEEcCHHH
Confidence 23444444 47899999999853
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.96 E-value=0.61 Score=41.02 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987653
No 280
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.88 E-value=3.6 Score=38.46 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 44 (707)
+|+||||+|.+++...... =..++|++... ...++.+.+
T Consensus 32 ~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHHH
Confidence 6999999998887655432 23577776544 344444433
No 281
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=81.56 E-value=1.9 Score=44.77 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=42.6
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCc-EEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcch-----hhHHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEK-VISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSH-----ETVRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~-----~~~~~~~~~ 66 (707)
+|+|||+|| ..+.+... -+. ++++-+.+.. .+.++.+++.+.-.. ....++. .....-.+-
T Consensus 172 ~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 247 (507)
T 1fx0_A 172 RQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 247 (507)
T ss_dssp SSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999996 57776542 443 4666666554 455666666442110 0011110 111222334
Q ss_pred HHHh-cCCcEEEEEeCCC
Q 042869 67 ERLK-KEPKILIILDDIW 83 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~ 83 (707)
+++. .|+.+||++||+.
T Consensus 248 Eyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 248 EYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHTTCEEEEEEECHH
T ss_pred HHHHHcCCcEEEEEecHH
Confidence 4443 4789999999985
No 282
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=81.42 E-value=1.5 Score=40.15 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIK 38 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 38 (707)
||+||||+|..+......+ . .+.-++.....+..
T Consensus 10 GGvGKTT~a~~LA~~la~~-g--~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQ-G--ETLLIDGDPNRSAT 43 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTT-S--CEEEEEECTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHhc-C--CEEEEECCCCCCHH
Confidence 8999999999999877654 2 56667766554443
No 283
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=81.32 E-value=2.7 Score=43.47 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=44.4
Q ss_pred CCCcHHHHH-HHHHHHhhhccCCCc-EEEEEecCCc-CHHHHHHHHHHHhch-------hhhhcchhh-----HHHHHHH
Q 042869 2 GGIGKTTLV-KEVGRQVKENNLFEK-VISSRVSQTP-QIKNIQGEIAEKIGL-------ELAEQSHET-----VRAGRLL 66 (707)
Q Consensus 2 gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~~~~~~ 66 (707)
.|+|||+|| ..+.+. +.-+. ++++-+.+.. .+.++.+++.+.-.. ....++... ...-.+-
T Consensus 171 ~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMG 246 (513)
T ss_dssp SSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHH
Confidence 489999996 566664 22444 5677777665 466777776553111 011111011 1112234
Q ss_pred HHHh-cCCcEEEEEeCCCC
Q 042869 67 ERLK-KEPKILIILDDIWG 84 (707)
Q Consensus 67 ~~l~-~~kr~LlVlDdv~~ 84 (707)
+++. +|+.+||++||+..
T Consensus 247 Eyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 247 EYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHTTCEEEEEEETHHH
T ss_pred HHHHhcCCCEEEEecChHH
Confidence 4443 47899999999853
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.51 E-value=0.71 Score=40.95 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGR 15 (707)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (707)
++|+||||+|+.+..
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=80.47 E-value=3.1 Score=37.56 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
..|+||||+|+.+....
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998765
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.46 E-value=0.76 Score=41.04 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 13 ~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998765
No 287
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.38 E-value=3 Score=39.03 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIA 45 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 45 (707)
+|+||||+|.+++.+...+ .-..+++++.. .+..++.+.+.
T Consensus 39 pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E--~~~~~~~~~~~ 79 (251)
T 2zts_A 39 TGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE--ERARDLRREMA 79 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHH-HCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCCceeeccc--CCHHHHHHHHH
Confidence 7999999998876543222 12345555543 45566655543
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.31 E-value=0.78 Score=41.63 Aligned_cols=17 Identities=47% Similarity=0.577 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999998765
No 289
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.05 E-value=4.2 Score=38.03 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
.|+|||||++.+...
T Consensus 39 nGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 39 TGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998843
No 290
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.79 E-value=0.84 Score=40.33 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 12 ~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 12 FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999987653
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.46 E-value=0.87 Score=40.86 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998765
No 292
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=79.36 E-value=2 Score=45.14 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 44 (707)
.|+|||+|+..+.+.. +-+.++++-+.+.. .+.++++++
T Consensus 241 ~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 241 FGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 5899999999998763 24667777777653 455666554
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.88 E-value=0.91 Score=40.30 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998765
No 294
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.85 E-value=3.7 Score=39.80 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||++..+......
T Consensus 114 ~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 114 TGAGKTTTLAKLAAISML 131 (296)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999887654
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=78.77 E-value=0.91 Score=40.76 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998765
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.69 E-value=0.96 Score=40.54 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 11 ~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998654
No 297
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.47 E-value=1.1 Score=51.08 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||++|+.+.+...
T Consensus 597 ~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 597 TGVGKTELAKTLAATLF 613 (854)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999998763
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=78.43 E-value=0.96 Score=39.61 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 15 ~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999987654
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.91 E-value=3.7 Score=37.28 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||.|+.+...+.
T Consensus 9 PGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 9 PGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 79999999999987653
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=77.84 E-value=0.97 Score=39.75 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 12 ~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 301
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=77.81 E-value=5.5 Score=41.26 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK 47 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 47 (707)
+|+||||+|..++.....+. =..++|++.. .+..++...++..
T Consensus 209 pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 69999999999988765431 1246676554 5566777776644
No 302
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=77.60 E-value=2.1 Score=38.80 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQI 37 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 37 (707)
||+||||+|..+......+ =..+.-++.....+.
T Consensus 11 gG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSL 44 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred CCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCH
Confidence 8999999999998877643 224556666544433
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.47 E-value=1 Score=40.82 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 304
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=77.22 E-value=1.1 Score=40.67 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 479999999999988654
No 305
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.84 E-value=0.99 Score=40.49 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQ 16 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (707)
+.|+||||+++.+...
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 4799999999999865
No 306
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.81 E-value=2.9 Score=38.38 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQ 36 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 36 (707)
||+||||+|..+......+ .++. ..+.+..+.+
T Consensus 15 gGvGKTt~a~~la~~l~~~-G~~V-~v~d~D~q~~ 47 (228)
T 2r8r_A 15 PGVGKTYAMLQAAHAQLRQ-GVRV-MAGVVETHGR 47 (228)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TCCE-EEEECCCTTC
T ss_pred CCCcHHHHHHHHHHHHHHC-CCCE-EEEEeCCCCC
Confidence 8999999998888876543 2443 3444444333
No 307
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=76.79 E-value=6 Score=41.12 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAE 46 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 46 (707)
+|+||||+|..++....... =..++|++.. .+..++...++.
T Consensus 212 pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHHH
Confidence 69999999999988765431 1246676544 455666666643
No 308
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.48 E-value=3.5 Score=50.56 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhh-----hcchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELA-----EQSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+|||+||.++...-..+ =..+.|+++...++... ++.++.+.. .....+.....+.+...+.+.-+
T Consensus 1436 pGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~l 1508 (2050)
T 3cmu_A 1436 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1508 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCE
Confidence 6999999999998765432 23577888877776655 344442110 00112233333333434456789
Q ss_pred EEEeCCC
Q 042869 77 IILDDIW 83 (707)
Q Consensus 77 lVlDdv~ 83 (707)
||+|.+.
T Consensus 1509 VVIDsi~ 1515 (2050)
T 3cmu_A 1509 IVVDSVA 1515 (2050)
T ss_dssp EEESCGG
T ss_pred EEEcChh
Confidence 9999995
No 309
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=76.34 E-value=1.2 Score=39.70 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
++|+||||+|+.+......
T Consensus 21 ~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5799999999999987654
No 310
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=76.14 E-value=1.2 Score=39.62 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.12 E-value=1.2 Score=39.78 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQ 16 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (707)
+.|+||||+|+.+...
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5799999999999875
No 312
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=76.08 E-value=1.2 Score=39.60 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999987653
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=75.85 E-value=1.2 Score=39.00 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987643
No 314
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.84 E-value=1.3 Score=38.69 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 8 ~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987653
No 315
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.78 E-value=6.7 Score=40.53 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK 47 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 47 (707)
+|+||||+|..++.+...+ =..++|++ -+.+..++...++..
T Consensus 206 pG~GKTtlal~ia~~~a~~--g~~vl~fS--lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 206 PSMGKTAFALKQAKNMSDN--DDVVNLHS--LEMGKKENIKRLIVT 247 (444)
T ss_dssp SSSSHHHHHHHHHHHHHHT--TCEEEEEC--SSSCTTHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHc--CCEEEEEE--CCCCHHHHHHHHHHH
Confidence 7999999999998876554 12455654 444556666666544
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.69 E-value=2.2 Score=47.56 Aligned_cols=121 Identities=12% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||.+|+++++..... ++.++ ..+ ++..-. +..+..+..+++.-++...+.|+||+
T Consensus 520 PGtGKT~lAkaiA~e~~~~-------f~~v~----~~~----l~s~~v------Gese~~vr~lF~~Ar~~~P~IifiDE 578 (806)
T 3cf2_A 520 PGCGKTLLAKAIANECQAN-------FISIK----GPE----LLTMWF------GESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCE-------EEECC----HHH----HHTTTC------SSCHHHHHHHHHHHHTTCSEEEECSC
T ss_pred CCCCchHHHHHHHHHhCCc-------eEEec----cch----hhcccc------chHHHHHHHHHHHHHHcCCceeechh
Confidence 7999999999999875432 22322 111 111111 11223455666665555789999999
Q ss_pred CCCcc--------c--------ccccccccCCCC-CCeEEEE-eeCCccccc----cccCCcceEEeecCChHHHHHHHH
Q 042869 82 IWGSL--------D--------LEAIGIPFADNN-SGCKVLL-TARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFK 139 (707)
Q Consensus 82 v~~~~--------~--------~~~l~~~l~~~~-~gs~iiv-Ttr~~~v~~----~~~~~~~~~~l~~L~~~~a~~Lf~ 139 (707)
++..- . ..++...+.... ....+|| ||....... ....-...+.+..-+.++-.++|.
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~ 658 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTT
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHH
Confidence 97430 0 111222221112 2234455 444433321 111234567777777777777777
Q ss_pred hhhc
Q 042869 140 KMTG 143 (707)
Q Consensus 140 ~~~~ 143 (707)
.+..
T Consensus 659 ~~l~ 662 (806)
T 3cf2_A 659 ANLR 662 (806)
T ss_dssp TTSS
T ss_pred HHhc
Confidence 6654
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=75.55 E-value=0.95 Score=40.24 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=11.1
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 13 ~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CC----CHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999987643
No 318
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=75.28 E-value=0.93 Score=41.85 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=50.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc--chhhHHHHHHHHHHhcCCcEEEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ--SHETVRAGRLLERLKKEPKILIIL 79 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l~~~kr~LlVl 79 (707)
.|+||||+|..+..+...+. . .+..+..... .. ....++++++...... ....+....+.+....++.-+||+
T Consensus 21 mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViI 95 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYAD-V-KYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGI 95 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEE
T ss_pred CCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 48999999988888776542 2 2333332221 11 1223444444322111 111122222222222233459999
Q ss_pred eCCCCc--ccccccccccCCCCCCeEEEEeeCCcc
Q 042869 80 DDIWGS--LDLEAIGIPFADNNSGCKVLLTARSQD 112 (707)
Q Consensus 80 Ddv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~ 112 (707)
|.+... ++.+.+. .+.+ .|-.||+|-++..
T Consensus 96 DEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 96 DEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred ecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 999753 2333332 2222 2678888888654
No 319
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=75.18 E-value=8.2 Score=35.45 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=26.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAE 46 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 46 (707)
+.|+||||+++.+.........+.+.....-.......+.+++++.
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 3699999999999987765123454432222221123344555554
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=75.16 E-value=1.3 Score=41.93 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
..|+||||+|+.++....
T Consensus 9 ~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHhcCC
Confidence 479999999999987653
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.92 E-value=1.4 Score=39.59 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=74.63 E-value=1.4 Score=40.17 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
+.|+||||+|+.+......
T Consensus 12 ~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 4699999999999987654
No 323
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=74.57 E-value=2.4 Score=39.79 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKN 39 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 39 (707)
||+||||+|..+......+. ..+.-|+.....+...
T Consensus 9 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 89999999999998776542 3455566655455443
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=74.33 E-value=1.5 Score=39.81 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 325
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=74.19 E-value=7.5 Score=37.58 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRV 31 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (707)
+|+||||++..++...... -..+.++..
T Consensus 107 ~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 107 QGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp TTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 7999999999999876543 223445544
No 326
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=74.11 E-value=1.4 Score=41.94 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 12 ~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999988643
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=73.99 E-value=1.4 Score=38.83 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998754
No 328
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.98 E-value=8.6 Score=39.49 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
||+||||+|..++.....+
T Consensus 109 ~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 109 QGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 7999999999998877553
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=73.80 E-value=1.5 Score=39.36 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.43 E-value=1.6 Score=40.31 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 12 ~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999998765
No 331
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=73.34 E-value=8.3 Score=40.68 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEK 47 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 47 (707)
+|+||||+|.+++.+...+. =..++|++. +.+..++...++..
T Consensus 251 pG~GKT~lal~~a~~~a~~~-g~~vl~~s~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 251 SGMVMSTFVRQQALQWGTAM-GKKVGLAML--EESVEETAEDLIGL 293 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTTS-CCCEEEEES--SSCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhc-CCcEEEEec--cCCHHHHHHHHHHH
Confidence 79999999999988765431 124667655 44567777776544
No 332
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.21 E-value=2.5 Score=47.58 Aligned_cols=121 Identities=12% Similarity=0.186 Sum_probs=59.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+||||||+.+....... | +.++.+. +. ... ..........+.+........++++|+
T Consensus 247 ~GtGKTtLarala~~l~~~--~---i~v~~~~----------l~----~~~--~g~~~~~l~~vf~~a~~~~p~il~iDE 305 (806)
T 1ypw_A 247 PGTGKTLIARAVANETGAF--F---FLINGPE----------IM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCE--E---EEEEHHH----------HS----SSS--TTHHHHHHHHHHHHHHHHCSEEEEEES
T ss_pred CCCCHHHHHHHHHHHcCCc--E---EEEEchH----------hh----hhh--hhhHHHHHHHHHHHHHhcCCcEEEecc
Confidence 6999999999998764322 2 3333211 10 000 010112233344443333578999999
Q ss_pred CCCccc-------------ccccccccCC--CCCCeEEEEeeCCcccccccc----CCcceEEeecCChHHHHHHHHhhh
Q 042869 82 IWGSLD-------------LEAIGIPFAD--NNSGCKVLLTARSQDVLSCKM----DCQQNFFVDVLNEKEAWSLFKKMT 142 (707)
Q Consensus 82 v~~~~~-------------~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~a~~Lf~~~~ 142 (707)
+..... ...+...+.. ...+-.+|.||....-..... .....+.+...+.++-.+++...+
T Consensus 306 id~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp GGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred HHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 953210 0111111111 112345555555533221111 122456788888888888888766
Q ss_pred c
Q 042869 143 G 143 (707)
Q Consensus 143 ~ 143 (707)
.
T Consensus 386 ~ 386 (806)
T 1ypw_A 386 K 386 (806)
T ss_dssp T
T ss_pred h
Confidence 4
No 333
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=73.21 E-value=1.6 Score=39.75 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+++.+....
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 47999999999998765
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.00 E-value=1.5 Score=39.73 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 33 ~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY 50 (200)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999988764
No 335
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=72.98 E-value=7.9 Score=37.59 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRV 31 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (707)
+|+||||++..++...... -..+.++..
T Consensus 113 ~GsGKTTl~~~LA~~l~~~--g~kV~lv~~ 140 (306)
T 1vma_A 113 NGTGKTTSCGKLAKMFVDE--GKSVVLAAA 140 (306)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence 6999999999999876543 223445544
No 336
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.87 E-value=7.6 Score=37.56 Aligned_cols=81 Identities=21% Similarity=0.137 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHHHHHhchhhhhc---chhhHHHHHHHHHHhcCCcEEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEIAEKIGLELAEQ---SHETVRAGRLLERLKKEPKILI 77 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~l~~~kr~Ll 77 (707)
+|+||||++..++.....+ -..+.+++..-.. ...+.++...+..+.+.-.. .+..+......+.+....-=++
T Consensus 107 ~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~V 184 (297)
T 1j8m_F 107 QGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEII 184 (297)
T ss_dssp SCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 7999999999998876543 2335555543222 22233333444444332111 1112222344455542222378
Q ss_pred EEeCCCC
Q 042869 78 ILDDIWG 84 (707)
Q Consensus 78 VlDdv~~ 84 (707)
|+|-...
T Consensus 185 iIDTpg~ 191 (297)
T 1j8m_F 185 IVDTAGR 191 (297)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 8888643
No 337
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=72.83 E-value=1.9 Score=45.13 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc-CHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP-QIKNIQGEI 44 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 44 (707)
.|+|||+|+..+.+.. +-+.++++-+.+.. .+.++.+++
T Consensus 230 ~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 230 FGSGKSVTQQSLAKWS----NADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp TTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHTTG
T ss_pred CCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 5899999999998763 24567777777653 455555544
No 338
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=72.74 E-value=3.9 Score=40.30 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNI 40 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 40 (707)
||+||||+|..++.....+ =..+.-|+..-..++...
T Consensus 23 GGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARS--GKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCHHHH
T ss_pred CCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCHHHH
Confidence 8999999999998876643 223555665555555443
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.58 E-value=1.7 Score=39.16 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 20 ~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987653
No 340
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=72.18 E-value=1.7 Score=38.89 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998764
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.71 E-value=1.8 Score=39.99 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 13 ~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQ 30 (222)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987654
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=71.56 E-value=1.8 Score=40.17 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998754
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=71.53 E-value=1.8 Score=39.68 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 344
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=71.51 E-value=5 Score=35.85 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
..|+||||+|+.+......
T Consensus 8 ~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3699999999999987643
No 345
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=71.50 E-value=1.8 Score=39.72 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998765
No 346
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=71.39 E-value=1.7 Score=38.82 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGR 15 (707)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (707)
..|+||||+++.+..
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 369999999999975
No 347
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=71.12 E-value=3.7 Score=40.58 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIK 38 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 38 (707)
||+||||+|..++.....+ =..+.-|+.....++.
T Consensus 25 GGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHH
T ss_pred CCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChh
Confidence 8999999999998876543 2345566665444433
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.68 E-value=1.9 Score=38.55 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 14 ~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDF 30 (194)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=70.56 E-value=1.9 Score=39.03 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998754
No 350
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=70.51 E-value=2 Score=39.41 Aligned_cols=17 Identities=18% Similarity=0.028 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 351
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=70.46 E-value=2 Score=39.16 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCc
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEK 25 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~ 25 (707)
+.|+||||+|+.+....... .++.
T Consensus 18 ~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 46999999999999876543 3444
No 352
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=70.21 E-value=7.4 Score=39.84 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|+||||++..++.....+
T Consensus 106 ~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 106 QGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 6999999999998876543
No 353
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=70.11 E-value=1.9 Score=39.05 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGR 15 (707)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (707)
+.|+||||+|+.+..
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 379999999999987
No 354
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=69.85 E-value=8.4 Score=39.47 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||++..++.....
T Consensus 109 ~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 109 QGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp TTSSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999999999876654
No 355
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=69.84 E-value=1.9 Score=39.47 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998654
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=69.83 E-value=2.1 Score=39.88 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 24 ~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988753
No 357
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=69.81 E-value=1.9 Score=38.16 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+|||||++.+.....+
T Consensus 9 nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 9 PGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp TTSSHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 699999999999987653
No 358
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=69.77 E-value=4 Score=38.82 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ 33 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 33 (707)
||+||||+|..+......+ .. .+.-|+...
T Consensus 10 GGvGKTT~a~nLA~~la~~-G~-~VlliD~D~ 39 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAM-GK-TIMVVGCDP 39 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTT-TC-CEEEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHC-CC-cEEEEcCCC
Confidence 8999999999998877643 12 355555553
No 359
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=69.75 E-value=6.4 Score=38.05 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCC-cEEEEEecCCcCHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFE-KVISSRVSQTPQIKNIQGEIAE 46 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~ 46 (707)
+|+|||||++.++...... -+ .++|+... .+..++.+.+..
T Consensus 44 ~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e--~~~~~~~~r~~~ 85 (296)
T 1cr0_A 44 SGMGKSTFVRQQALQWGTA--MGKKVGLAMLE--ESVEETAEDLIG 85 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHT--SCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc--CCHHHHHHHHHH
Confidence 6999999999999876543 23 45566543 344455544443
No 360
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=69.64 E-value=10 Score=36.43 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+||||||+.+......
T Consensus 40 sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 40 QGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 699999999998876654
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=69.40 E-value=2.2 Score=39.00 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCc
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEK 25 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~ 25 (707)
+.|+||||+|+.+....... .++.
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 46999999999999876543 3444
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=69.30 E-value=2.2 Score=39.41 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998765
No 363
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=69.30 E-value=6.5 Score=35.87 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAE 46 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 46 (707)
..|+||||+++.+....... .+..+....-.....+.+.+++++.
T Consensus 11 ~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 36999999999999887654 3433333322222224455555554
No 364
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=69.28 E-value=6.2 Score=36.64 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=20.4
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCcEEEE
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEKVISS 29 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (707)
..|+||||+++.+....... .+..+...
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 36999999999999887654 45534443
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.03 E-value=1.8 Score=41.86 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+....
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 366
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.94 E-value=8.5 Score=46.59 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=43.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhh-----cchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAE-----QSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||||.+++.....+ =..++|++........ . ++.++.+... .....+....+.+...+.+.-+
T Consensus 741 PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~l 813 (1706)
T 3cmw_A 741 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 813 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCCE
Confidence 6999999999998876543 2357777766655542 1 4555532111 1112222222322222345669
Q ss_pred EEEeCCCCc
Q 042869 77 IILDDIWGS 85 (707)
Q Consensus 77 lVlDdv~~~ 85 (707)
||+|.+...
T Consensus 814 VVIDsLq~l 822 (1706)
T 3cmw_A 814 IVVDSVAAL 822 (1706)
T ss_dssp EEESCSTTC
T ss_pred EEEechhhh
Confidence 999998643
No 367
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.91 E-value=9.4 Score=38.96 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
+|+||||++..++.....+
T Consensus 107 ~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 107 QGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp TTSSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 7999999999999876543
No 368
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=68.77 E-value=2.3 Score=40.29 Aligned_cols=17 Identities=53% Similarity=0.771 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
||+||||++..+.....
T Consensus 23 gGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 23 AGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999987665
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=68.50 E-value=2.2 Score=37.68 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 479999999999988654
No 370
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=68.19 E-value=4.6 Score=38.88 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKN 39 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~ 39 (707)
||+||||+|..+......+ =..+.-|+... ..+...
T Consensus 14 GGvGKTT~a~nLA~~La~~--G~~VlliD~D~~q~~l~~ 50 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYG--GAKVAVIDLDLRQRTSAR 50 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHT--TCCEEEEECCTTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCCCHHH
Confidence 8999999999998876643 12355566655 444443
No 371
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.87 E-value=2.5 Score=38.64 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLV 50 (211)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 479999999999988765
No 372
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=67.70 E-value=4.6 Score=38.91 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT 34 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 34 (707)
||+||||+|..+......+ .. .+.-|+....
T Consensus 11 GGvGKTT~a~nLA~~La~~-G~-rVlliD~D~q 41 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEM-GK-KVMIVGCDPK 41 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TC-CEEEEEECSS
T ss_pred CcCcHHHHHHHHHHHHHHC-CC-eEEEEecCCC
Confidence 8999999999998876543 12 3455555543
No 373
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=67.67 E-value=2.2 Score=37.75 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+|||||++.+.....
T Consensus 14 sGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 14 HGVGRRHIKNTLITKHP 30 (180)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 69999999999987643
No 374
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=67.66 E-value=4.5 Score=40.31 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
||+||||+|..++.....
T Consensus 35 GGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp SSTTHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 899999999998876654
No 375
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=67.64 E-value=4.2 Score=38.64 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQ 36 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 36 (707)
||+||||+|..+..... + . ..+.-|++....+
T Consensus 37 GGvGKTT~a~~LA~~la-~-g-~~VlliD~D~~~~ 68 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS-K-N-NKVLLIDMDTQAS 68 (267)
T ss_dssp SSSCHHHHHHHHHHHHT-T-T-SCEEEEEECTTCH
T ss_pred CCchHHHHHHHHHHHHH-C-C-CCEEEEECCCCCC
Confidence 89999999999998877 4 2 3455566654443
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=67.46 E-value=2.4 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46999999999998765
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=67.07 E-value=2.9 Score=36.52 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+||||++..+......
T Consensus 13 sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 13 KHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHh
Confidence 699999999999987654
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=66.78 E-value=2.6 Score=37.82 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQ 16 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (707)
+.|+||||+|+.+...
T Consensus 20 ~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 20 KIGTGKSTVCEILKNK 35 (192)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4699999999999875
No 379
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=66.72 E-value=5.7 Score=38.67 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP 35 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 35 (707)
||+||||+|..+......+ =..+.-|++.-..
T Consensus 50 GGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 81 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKH 81 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSC
T ss_pred CCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 8999999999988876643 1235556655433
No 380
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=66.24 E-value=2.7 Score=39.46 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
..|+||||+++.+....
T Consensus 35 ~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999999654
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.10 E-value=2.4 Score=38.51 Aligned_cols=15 Identities=33% Similarity=0.251 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGR 15 (707)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (707)
+.|+||||+++.+..
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999975
No 382
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=66.07 E-value=5.2 Score=39.74 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHHHhhh-ccCCCcEEEEEecCCcCHH
Q 042869 2 GGIGKTTLVKEVGRQVKE-NNLFEKVISSRVSQTPQIK 38 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~ 38 (707)
||+||||+|..++..... + .=..+.-++.....++.
T Consensus 27 GGvGKTt~a~~lA~~la~~~-~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 27 GGVGKTTTSSSVAVQLALAQ-PNEQFLLISTDPAHNLS 63 (348)
T ss_dssp TTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSSCHHH
T ss_pred CCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCCCChH
Confidence 899999999999887762 2 12335556665444433
No 383
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=65.86 E-value=2.6 Score=39.69 Aligned_cols=18 Identities=44% Similarity=0.503 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
|.|+||||+++.+.....
T Consensus 56 ~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999987653
No 384
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=65.67 E-value=2.6 Score=38.14 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
..|+||||+++.+....
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998755
No 385
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=65.46 E-value=9.8 Score=46.80 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhh-----cchhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAE-----QSHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~l~~~kr~L 76 (707)
+|+||||||.+++...... =..++|++.....+... ++.++.+... .....+....+.....+++.-+
T Consensus 392 pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~l 464 (2050)
T 3cmu_A 392 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 464 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence 6999999999998776543 24688888777666532 4555543211 1111222222222222345569
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|-+..
T Consensus 465 IVIDSL~a 472 (2050)
T 3cmu_A 465 IVVDSVAA 472 (2050)
T ss_dssp EEESCGGG
T ss_pred EEECCHHH
Confidence 99999863
No 386
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=65.43 E-value=5.8 Score=39.93 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQI 37 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 37 (707)
||+||||+|..++.....+ =..+.-+++....+.
T Consensus 153 GGvGKTT~a~nLA~~La~~--g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHANM--GKKVFYLNIEQCGTT 186 (373)
T ss_dssp TTSSHHHHHHHHHHHHHHH--TCCEEEEECCTTCCH
T ss_pred CCChHHHHHHHHHHHHHhC--CCCEEEEECCCCCCH
Confidence 8999999999988876543 234666776643343
No 387
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=65.42 E-value=2.9 Score=38.57 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
..|+||||+|+.+....
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999998754
No 388
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=65.27 E-value=11 Score=34.68 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
+.|+||||+++.++.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4699999999999987754
No 389
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=65.22 E-value=2.9 Score=39.16 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 390
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=65.17 E-value=2.2 Score=38.84 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+|||||++.+......
T Consensus 31 sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 31 PGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp TTSCTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 699999999999886653
No 391
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=65.17 E-value=3 Score=39.63 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQT 34 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 34 (707)
||+||||+|..+......+ .. .+.-++....
T Consensus 28 GGvGKTT~a~nLA~~la~~-G~-~VlliD~D~~ 58 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQ-GK-KVGILDADFL 58 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHT-TC-CEEEEECCSS
T ss_pred CCCCHHHHHHHHHHHHHHC-CC-eEEEEeCCCC
Confidence 8999999999998876543 12 3455555433
No 392
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=65.09 E-value=2.9 Score=39.05 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS 32 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 32 (707)
||+||||+|..+......+.. ..+.-++..
T Consensus 14 GGvGKTt~a~~LA~~la~~~g-~~VlliD~D 43 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQEPD-IHVLAVDIS 43 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTSTT-CCEEEEECC
T ss_pred CCcchHHHHHHHHHHHHhCcC-CCEEEEECC
Confidence 899999999999887654311 234555554
No 393
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=65.01 E-value=2.7 Score=36.33 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|.|||||++.+..-.
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 4999999999999865
No 394
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=64.90 E-value=2.8 Score=37.77 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQ 16 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (707)
+.|+||||+|+.+...
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4699999999999874
No 395
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=64.86 E-value=2.1 Score=37.61 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=11.2
Q ss_pred CCCcHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVG 14 (707)
Q Consensus 2 gGiGKTtLa~~v~ 14 (707)
.|+|||||++.++
T Consensus 18 nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 18 SGSGKSTFAKKHF 30 (171)
T ss_dssp TTSCHHHHHHHHS
T ss_pred CCCCHHHHHHHHc
Confidence 6999999999754
No 396
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=64.69 E-value=2.5 Score=38.14 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||+|.++++...
T Consensus 67 PGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 67 ANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp GGGCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998764
No 397
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=64.62 E-value=2.7 Score=37.96 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+....
T Consensus 16 ~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 16 SGAGKTSLVRALVKAL 31 (205)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998754
No 398
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=64.61 E-value=6.3 Score=37.11 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIK 38 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~ 38 (707)
||+||||+|..+......+ .. .+.-|+..- ..+..
T Consensus 12 gGvGKTt~a~~LA~~la~~-g~-~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQK-GK-KTVVIDFAIGLRNLD 47 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TC-CEEEEECCCSSCCHH
T ss_pred CCCcHHHHHHHHHHHHHhC-CC-cEEEEECCCCCCChh
Confidence 8999999999998877643 12 355566553 34443
No 399
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=64.04 E-value=5.2 Score=37.10 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ 33 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 33 (707)
||+||||+|..+......+ -..+.-++...
T Consensus 12 gGvGKTt~a~~LA~~la~~--g~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDR--GRKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEeCCC
Confidence 8999999999999877643 23455566653
No 400
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=63.77 E-value=6.2 Score=38.91 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ 33 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 33 (707)
||+||||+|..++.....+ =..+.-++..-
T Consensus 28 GGvGKTTva~~LA~~lA~~--G~rVllvD~D~ 57 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMSKV--RSSVLLISTDP 57 (329)
T ss_dssp SSSSHHHHHHHHHHHHHTS--SSCEEEEECCT
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEECCC
Confidence 8999999999998877643 12344555543
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=63.63 E-value=2.2 Score=40.35 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
.+|+||||+|+.+....
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998764
No 402
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=63.49 E-value=6.5 Score=38.03 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCc
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTP 35 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 35 (707)
||+||||+|..+......+ =..+.-|+.....
T Consensus 46 GGvGKTT~a~nLA~~la~~--G~rVlliD~D~q~ 77 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDKL--NLKVLMIDKDLQA 77 (298)
T ss_dssp SSSSHHHHHHHHHHHHHHT--TCCEEEEEECTTC
T ss_pred CCchHHHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence 8999999999998776543 1235556655443
No 403
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=63.45 E-value=3.5 Score=37.91 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
||+||||+|..++.....+
T Consensus 11 gGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999988876543
No 404
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=63.43 E-value=4.4 Score=38.29 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ 33 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 33 (707)
||+||||+|..+......+ =..+.-|+...
T Consensus 16 GGvGKTt~a~~LA~~la~~--g~~VlliD~D~ 45 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLARL--GKRVLLVDLDP 45 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCchHHHHHHHHHHHHHHC--CCCEEEEECCC
Confidence 8999999999999877643 12355566543
No 405
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=63.25 E-value=2.9 Score=37.97 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
.|+||||+|+.+...
T Consensus 30 ~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 30 TNSGKTTLAKNLQKH 44 (207)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999999864
No 406
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=62.94 E-value=8 Score=38.54 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHhh--hccCCCcEEEEEecCCcCHHHH
Q 042869 2 GGIGKTTLVKEVGRQVK--ENNLFEKVISSRVSQTPQIKNI 40 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~~s~~~~~~~~ 40 (707)
||+||||+|..+..... .+ =..+.-|+..-..++..+
T Consensus 27 GGvGKTTvaanLA~~lA~~~~--G~rVLLvD~D~~~~l~~~ 65 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQMALSQP--NKQFLLISTDPAHNLSDA 65 (354)
T ss_dssp TTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCCHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCCHHHH
Confidence 89999999999988776 32 223555665544555443
No 407
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=62.90 E-value=9.8 Score=34.64 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHHHHhhhccCCCc
Q 042869 1 MGGIGKTTLVKEVGRQVKENNLFEK 25 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~ 25 (707)
..|+||||+++.+......+ .+.+
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 36999999999999877654 3444
No 408
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.83 E-value=3.1 Score=37.88 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+|||||++.+.....
T Consensus 15 ~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 15 TASGKTTLAQALARTLG 31 (211)
T ss_dssp TTSSHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 59999999999988654
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=62.64 E-value=3.2 Score=40.39 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGRQ 16 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (707)
++|+||||+|+.+...
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999874
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=62.45 E-value=2.6 Score=38.43 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+||||+|+.+......
T Consensus 9 ~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEHHHHHHHHHHHHHE
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 599999999999887653
No 411
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.90 E-value=3.3 Score=37.67 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+||||+++.+.....
T Consensus 17 sGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 17 SGVGKGTVREAVFKDPE 33 (208)
T ss_dssp TTSCHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 69999999999987654
No 412
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=61.85 E-value=3.2 Score=36.92 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||||++++.....
T Consensus 10 SG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 10 SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 69999999999987654
No 413
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=61.73 E-value=3.4 Score=36.78 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+|||||++.+.....
T Consensus 10 sGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 10 SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp SSSSHHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 59999999999997654
No 414
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=61.67 E-value=3.1 Score=40.71 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS 32 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 32 (707)
||+||||.|-.+.--.... =..+.-+++.
T Consensus 57 GGVGKTTtavNLA~aLA~~--GkkVllID~D 85 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSIL--GKRVLQIGCD 85 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEES
T ss_pred CccCHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 8999999998887766543 1235555655
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=61.63 E-value=5.6 Score=36.80 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
..|+||||+++.+......
T Consensus 34 ~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 4699999999999987754
No 416
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=61.41 E-value=6.4 Score=39.44 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIK 38 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 38 (707)
||+||||+|..+......+ =..+.-|++....+..
T Consensus 11 GGvGKTT~a~nLA~~LA~~--G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFALQ--GKRVLYVDCDPQCNAT 45 (361)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCCEEEEECCTTCTTH
T ss_pred CCCcHHHHHHHHHHHHHhC--CCcEEEEEcCCCCChh
Confidence 8999999999988776542 2346666766555543
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=61.36 E-value=3.6 Score=37.71 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVGR 15 (707)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (707)
+.|+||||+|+.+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999975
No 418
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=60.84 E-value=7.9 Score=36.54 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ 33 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 33 (707)
||+||||+|..+......+ -..+.-++...
T Consensus 12 gGvGKTt~a~~LA~~la~~--g~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQL--GHDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 8999999999998877643 22355566553
No 419
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=60.72 E-value=3.6 Score=38.77 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
..|+||||+|+.+.....
T Consensus 30 ~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 369999999999987543
No 420
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=60.65 E-value=3.6 Score=37.17 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+||||+++.+.....
T Consensus 31 ~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 31 SRSGKTTLANQLSQTLR 47 (201)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999987654
No 421
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=60.23 E-value=4.1 Score=36.85 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
..|+||||+|+.+.....
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 10 PSASGKSSVARRVAAALG 27 (208)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 369999999999987653
No 422
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=60.14 E-value=5.7 Score=36.50 Aligned_cols=96 Identities=11% Similarity=0.014 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHHHHhhhccCCCcEEEEEe-cCCcCHHHHHHHHHHHhchhhhhc--chhhHHHHHHHHHHhcCCcEEEEE
Q 042869 3 GIGKTTLVKEVGRQVKENNLFEKVISSRV-SQTPQIKNIQGEIAEKIGLELAEQ--SHETVRAGRLLERLKKEPKILIIL 79 (707)
Q Consensus 3 GiGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l~~~kr~LlVl 79 (707)
|.||||-|-....+...+ ...+.++-.. ..... . .+.++++...... ....+ +.+.. ++--+|++
T Consensus 29 gsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~d----i~~~~--~~~dvViI 96 (234)
T 2orv_A 29 FSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRD----VAQEA--LGVAVIGI 96 (234)
T ss_dssp TSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC----------------CEEEEESSGGG----GHHHH--TTCSEEEE
T ss_pred CCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHH----HHHHh--ccCCEEEE
Confidence 799998887666666554 2333333221 12222 2 3444443322111 11111 22222 23349999
Q ss_pred eCCCCcccccccccccCCCCCCeEEEEeeCCcc
Q 042869 80 DDIWGSLDLEAIGIPFADNNSGCKVLLTARSQD 112 (707)
Q Consensus 80 Ddv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 112 (707)
|.+.-..+..++...+.. .|-.||+|.++..
T Consensus 97 DEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 97 DEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp SSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred EchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 998755434443333322 4778999999843
No 423
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.45 E-value=19 Score=35.11 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+||||+|+.+..-..
T Consensus 101 sGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 101 VAVGKSTTSRVLKALLS 117 (321)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 59999999999877554
No 424
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=59.40 E-value=4.4 Score=40.12 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
++|+||||+|+.++.....
T Consensus 32 ~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCC
Confidence 5799999999999886554
No 425
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=59.39 E-value=6 Score=35.86 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
-|+||||+++.+++...
T Consensus 11 dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLV 27 (205)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 49999999999998774
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=58.59 E-value=4.7 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 16 ~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987654
No 427
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=58.54 E-value=4.4 Score=38.17 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
..|+||||+++.+....
T Consensus 35 ~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 35 PSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 46999999999998654
No 428
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=58.46 E-value=4 Score=38.22 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+||||+|+.+....
T Consensus 34 ~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 34 TASGKSTVCEKIMELL 49 (245)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999998754
No 429
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.43 E-value=4.7 Score=35.98 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+||||+++.++....
T Consensus 10 nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 10 PGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhcc
Confidence 69999999999998664
No 430
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=58.07 E-value=4.3 Score=36.59 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+|||||++.+.....
T Consensus 13 sGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 13 SGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCc
Confidence 59999999999987553
No 431
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=57.82 E-value=4.9 Score=37.23 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
.+|+||||+|+.+.....
T Consensus 17 ~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 379999999999987653
No 432
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.80 E-value=4.3 Score=36.84 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+..-.
T Consensus 29 nGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 29 SAVGKSTVVRCLRERI 44 (207)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998765
No 433
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=57.68 E-value=4.5 Score=37.20 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||||+..+.....
T Consensus 47 ~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999987653
No 434
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=57.43 E-value=9.3 Score=38.80 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
||+||||+|..+.....
T Consensus 118 GGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999988765
No 435
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=57.40 E-value=4.3 Score=40.71 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+|||++|+++++..
T Consensus 60 pGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 60 TGSGKTLLAETLARLL 75 (363)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc
Confidence 6999999999999875
No 436
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=57.23 E-value=5.2 Score=35.13 Aligned_cols=18 Identities=39% Similarity=0.494 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+|||||++.+......
T Consensus 15 sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 699999999999886543
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=57.21 E-value=4.8 Score=36.82 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||.|+.+...+.
T Consensus 38 PGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 38 PGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTCCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 79999999999998653
No 438
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=56.98 E-value=5.7 Score=39.85 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHH
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKN 39 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 39 (707)
||+||||+|..++.....+ =..+.-|+. ...++.+
T Consensus 11 GG~GKTt~a~~la~~la~~--g~~vllvd~-~~~~l~~ 45 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQ--GKRVLLAGL-AEPVLPL 45 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHT--TCCEEEEEC-SCSHHHH
T ss_pred CCCcHHHHHHHHHHHHHHC--CCCeEEEeC-CCCChHH
Confidence 8999999999988776543 223566666 4444443
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=56.80 E-value=4.9 Score=37.48 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 10 ~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 36999999999998875
No 440
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=56.66 E-value=4.5 Score=38.86 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=12.7
Q ss_pred CCCCcHHHHHHHHH
Q 042869 1 MGGIGKTTLVKEVG 14 (707)
Q Consensus 1 mgGiGKTtLa~~v~ 14 (707)
+.|+||||+|+.+.
T Consensus 83 ~~GSGKSTva~~La 96 (281)
T 2f6r_A 83 ISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 47999999999998
No 441
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=56.63 E-value=4.3 Score=40.94 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+|||++|+.+++..
T Consensus 81 ~GtGKT~la~~la~~l 96 (376)
T 1um8_A 81 TGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999865
No 442
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=56.15 E-value=4.6 Score=39.45 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+|||||++.+..-...
T Consensus 99 sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 99 VAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TTSCHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHhhccc
Confidence 599999999999886543
No 443
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=55.72 E-value=4.6 Score=34.54 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||+..+...
T Consensus 12 ~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 12 GGVGKSALTIQLIQN 26 (166)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999864
No 444
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=55.51 E-value=4.9 Score=36.84 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+....
T Consensus 32 sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 32 SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998754
No 445
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=55.35 E-value=5.4 Score=35.83 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+|||||++.+.....
T Consensus 28 SGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 28 SGVGRSHIKNALLSQNP 44 (197)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 69999999999987643
No 446
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=54.78 E-value=22 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|.|||.+|..+....
T Consensus 117 tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL 132 (237)
T ss_dssp SSTTHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5999999998877653
No 447
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=54.54 E-value=27 Score=34.23 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecC-CcCHHHHHHHHHHHhch
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQ-TPQIKNIQGEIAEKIGL 50 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 50 (707)
.|+||||+++.+....... -..+.++...- .....+-++...++++.
T Consensus 138 nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 138 NGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 6999999999999876543 12344443321 12333444445555553
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=54.54 E-value=4.6 Score=41.40 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
++|+||||+|+.+..+.
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999998654
No 449
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.50 E-value=4.1 Score=40.26 Aligned_cols=21 Identities=5% Similarity=0.366 Sum_probs=17.0
Q ss_pred eEEeecCChHHHHHHHHhhhc
Q 042869 123 NFFVDVLNEKEAWSLFKKMTG 143 (707)
Q Consensus 123 ~~~l~~L~~~~a~~Lf~~~~~ 143 (707)
.+.++..+.++-.+++.+.+.
T Consensus 179 ~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 179 KIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEECCCCCHHHHHHHHHHHHC
T ss_pred EEEcCCCCHHHHHHHHHhccc
Confidence 578888898888888887764
No 450
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=54.39 E-value=4 Score=35.77 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHHhhhc
Q 042869 2 GGIGKTTLVKEVGRQVKEN 20 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (707)
.|+|||||++.+..-....
T Consensus 11 SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 11 SDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhhhc
Confidence 5899999999998876553
No 451
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=54.26 E-value=25 Score=36.74 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||++.++......
T Consensus 110 ~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 799999999999876654
No 452
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=54.17 E-value=5.5 Score=41.78 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
+.|+||||+|+++......
T Consensus 403 lsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 5799999999999988753
No 453
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=53.86 E-value=5.5 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+....
T Consensus 38 ~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 38 SGVGKSNLLSRFTRNE 53 (191)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998753
No 454
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=53.75 E-value=23 Score=43.02 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhc-----chhhHHHHHHHHHHhcCCcEE
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQ-----SHETVRAGRLLERLKKEPKIL 76 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~kr~L 76 (707)
.|+||||||.++......+ =..++|+++.+..++.- ++.++.+...- ...++.+..+...++++.--+
T Consensus 1440 ~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~ 1512 (1706)
T 3cmw_A 1440 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1512 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCE
Confidence 5899999998888654433 46688888887777653 66776654321 112334444445555667779
Q ss_pred EEEeCCCC
Q 042869 77 IILDDIWG 84 (707)
Q Consensus 77 lVlDdv~~ 84 (707)
||+|-|..
T Consensus 1513 vvvDsv~a 1520 (1706)
T 3cmw_A 1513 IVVDSVAA 1520 (1706)
T ss_dssp EEESCSTT
T ss_pred EEEccHHh
Confidence 99999853
No 455
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=53.49 E-value=17 Score=46.31 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEecCCcCHHHHHHHHHHHhchhhhhcchhhHHHHHHHHHHhcCCcEEEEEeC
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVSQTPQIKNIQGEIAEKIGLELAEQSHETVRAGRLLERLKKEPKILIILDD 81 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 81 (707)
+|+|||++|+.+..... .+ ..+.++.+...+...+++.+-..+.......+. +..--..+|+..+.+||
T Consensus 1276 pGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1276 PGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp TTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSSCEEEEEET
T ss_pred CCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCceEEEEecc
Confidence 69999999977765431 12 244577777777766666555444321100000 00000135789999999
Q ss_pred CC
Q 042869 82 IW 83 (707)
Q Consensus 82 v~ 83 (707)
+.
T Consensus 1345 in 1346 (2695)
T 4akg_A 1345 IN 1346 (2695)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 456
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=53.33 E-value=6.1 Score=38.62 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
..|+||||||+.++...
T Consensus 13 ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 13 PTAAGKTDLAMALADAL 29 (323)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 36999999999998764
No 457
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=53.23 E-value=5.9 Score=36.21 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||||+..+.....
T Consensus 39 ~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 39 IGSGKTLLIERTIERIG 55 (221)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999987653
No 458
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=53.13 E-value=5.7 Score=36.43 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+|||||++.+.....
T Consensus 25 sGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 25 SGAGKSSLIQALLKTQP 41 (219)
T ss_dssp TTSCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhccCC
Confidence 59999999999987654
No 459
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=53.12 E-value=5.8 Score=33.76 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||+..+...
T Consensus 10 ~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKK 24 (161)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhCC
Confidence 689999999998864
No 460
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.10 E-value=5.8 Score=38.58 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+|||++|+++.+..
T Consensus 34 ~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 34 SGTGKELVARALHACS 49 (304)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHhC
Confidence 6999999999998854
No 461
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=51.90 E-value=11 Score=36.94 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEe
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRV 31 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (707)
+|+||||++..++...... -..+.++..
T Consensus 114 ~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 114 NGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 7999999999998876543 233445543
No 462
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=51.88 E-value=6.1 Score=35.38 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
.|+|||||.+.+...
T Consensus 14 ~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 14 SGVGKSNLLSRFTRN 28 (199)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999875
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=51.85 E-value=5.7 Score=38.06 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+||||||..+.....
T Consensus 39 ~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 39 GGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999886543
No 464
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=51.62 E-value=5.8 Score=39.00 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.8
Q ss_pred CCcHHHHHHHHHHHhhh
Q 042869 3 GIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 3 GiGKTtLa~~v~~~~~~ 19 (707)
|+||||+++.+.+....
T Consensus 17 GaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 17 GIGKSTTGRVMASAASG 33 (334)
T ss_dssp TSSHHHHHHHHHSGGGC
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 89999999999887654
No 465
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=51.15 E-value=6.4 Score=34.79 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||+..+...
T Consensus 30 ~~~GKSsli~~l~~~ 44 (190)
T 3con_A 30 GGVGKSALTIQLIQN 44 (190)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 466
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=51.13 E-value=4 Score=40.63 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||++|+.+.+...
T Consensus 54 ~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 54 RGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGCTTHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHhCc
Confidence 69999999999998653
No 467
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=51.11 E-value=4.2 Score=42.69 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
+|+|||+||+++.+...
T Consensus 50 PGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 50 PGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp SSSSHHHHHHHGGGGBS
T ss_pred chHHHHHHHHHHHHHHh
Confidence 79999999999988653
No 468
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=50.80 E-value=7.2 Score=37.88 Aligned_cols=18 Identities=39% Similarity=0.744 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||+++.++.-...
T Consensus 111 nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 111 NGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp TTSSHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 699999999999987654
No 469
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=50.79 E-value=13 Score=40.13 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHhhhccCCCcEEEEEec
Q 042869 2 GGIGKTTLVKEVGRQVKENNLFEKVISSRVS 32 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 32 (707)
||+||||+|..+......+ =..+.-|+..
T Consensus 17 GGvGKTT~a~~lA~~lA~~--G~rVLlvd~D 45 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAEQ--GKRVLLVSTD 45 (589)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CcCHHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence 8999999999988876543 1234455544
No 470
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=50.38 E-value=6.9 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 43 lpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 579999999999987654
No 471
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=50.19 E-value=8.3 Score=34.17 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCc-ccccccccccCCCCCCeEEEEeeCCcc
Q 042869 73 PKILIILDDIWGS-LDLEAIGIPFADNNSGCKVLLTARSQD 112 (707)
Q Consensus 73 kr~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~ 112 (707)
+.-+|++|.+... .+|......+.+. |..|++|.++..
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 4569999999765 3344333323222 778888888643
No 472
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=50.18 E-value=6.4 Score=36.70 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||.+.+..-.
T Consensus 33 nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 33 TGAGKSVFLELIAGIV 48 (240)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHhCCC
Confidence 5999999999998643
No 473
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=50.07 E-value=6.9 Score=33.53 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||+..+.+.
T Consensus 14 ~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKG 28 (168)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 689999999999864
No 474
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.90 E-value=5.2 Score=36.38 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
.|+|||||++.+..-
T Consensus 31 nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 31 AGSGKTYLAMAKAVQ 45 (208)
T ss_dssp TTSSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999876
No 475
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=49.73 E-value=7.1 Score=38.41 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+||||||+.++....
T Consensus 16 tgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 16 TASGKTELSIEVAKKFN 32 (340)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHHcC
Confidence 69999999999987643
No 476
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=49.67 E-value=6.4 Score=34.62 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||+++++--.
T Consensus 35 NGsGKStll~ai~~~l 50 (182)
T 3kta_A 35 NGSGKSNIGDAILFVL 50 (182)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999997643
No 477
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=49.36 E-value=6.3 Score=33.97 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||.+.+...
T Consensus 12 ~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 12 PNVGKSTIFNALTGE 26 (165)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999998763
No 478
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=49.24 E-value=7.2 Score=40.69 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
++|+||||+|+.+.....
T Consensus 47 lpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 579999999999988754
No 479
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=49.05 E-value=5.8 Score=36.55 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+..-.
T Consensus 39 nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 39 SGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTSCHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999997643
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=48.80 E-value=7.4 Score=36.11 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+++.+....
T Consensus 24 ~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDF 40 (236)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 46999999999998754
No 481
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=48.72 E-value=8 Score=37.52 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+||||+++.++.....
T Consensus 109 nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 109 NGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999987654
No 482
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=48.37 E-value=7.2 Score=37.99 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHhh
Q 042869 2 GGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (707)
.|+|||||++.+.....
T Consensus 89 ~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 89 VAVGKSTTARVLQALLS 105 (308)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 59999999999987654
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=47.90 E-value=7 Score=34.43 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||++.+...
T Consensus 11 ~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 11 TGSGKTTLLQQLMKT 25 (184)
T ss_dssp TTSSHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999988763
No 484
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=47.63 E-value=13 Score=35.13 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
.|+||||+++.+......
T Consensus 34 ~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 34 TGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp TTCSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCC
Confidence 599999999999876543
No 485
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=47.58 E-value=7.4 Score=36.54 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
.|+|||||++.+..-
T Consensus 38 nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 38 NGAGKSTLGKILAGD 52 (250)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999874
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=47.28 E-value=7.5 Score=34.24 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||...+...
T Consensus 16 ~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 16 PNVGKSTIFNALTGE 30 (188)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999874
No 487
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=47.14 E-value=8.2 Score=32.97 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
+|+|||||+..+....
T Consensus 13 ~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 13 GGVGKSALTLQFMYDE 28 (168)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999988643
No 488
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=46.83 E-value=8.2 Score=41.58 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHhh
Q 042869 1 MGGIGKTTLVKEVGRQVK 18 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~ 18 (707)
+.|+||||+|+.+.....
T Consensus 60 lsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999988763
No 489
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=46.82 E-value=8.8 Score=32.74 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||+..+...
T Consensus 9 ~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 9 DAAGKTTILYKLKLG 23 (164)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcC
Confidence 689999999998764
No 490
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=46.79 E-value=7.4 Score=36.15 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+..-.
T Consensus 40 nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 40 SGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHhcCC
Confidence 5999999999997644
No 491
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=46.76 E-value=6.7 Score=35.82 Aligned_cols=16 Identities=50% Similarity=0.794 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.++.-.
T Consensus 44 NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 44 NGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999997643
No 492
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=46.64 E-value=8.6 Score=39.44 Aligned_cols=18 Identities=22% Similarity=0.577 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHhhh
Q 042869 2 GGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (707)
+|+||||+|+.++.....
T Consensus 59 pGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 59 TGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTSSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 799999999999987643
No 493
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=46.46 E-value=9.4 Score=34.85 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHhhh
Q 042869 1 MGGIGKTTLVKEVGRQVKE 19 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~ 19 (707)
..|+||||+++.+......
T Consensus 13 ~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 3699999999999987654
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=46.41 E-value=8.7 Score=34.99 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHHh
Q 042869 1 MGGIGKTTLVKEVGRQV 17 (707)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (707)
+.|+||||+|+.+....
T Consensus 11 ~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 11 PAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 46999999999997654
No 495
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=46.38 E-value=7.9 Score=36.78 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
.|+|||||++.++.-
T Consensus 55 NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 55 NGSGKSTLSATLAGR 69 (267)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999874
No 496
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=45.95 E-value=4.6 Score=38.30 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+||||+|+.+....
T Consensus 33 ~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 33 IAAGKSTFVNILKQLC 48 (263)
T ss_dssp TTSSHHHHHTTTGGGC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 5999999999988754
No 497
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=45.90 E-value=9 Score=33.40 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+||||+|.++...
T Consensus 25 SGaGKStlal~L~~r 39 (181)
T 3tqf_A 25 ANIGKSELSLALIDR 39 (181)
T ss_dssp SSSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc
Confidence 699999999998874
No 498
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=45.89 E-value=6.9 Score=36.40 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHHh
Q 042869 2 GGIGKTTLVKEVGRQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (707)
.|+|||||++.+..-.
T Consensus 40 nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 40 VGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTSSHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999998754
No 499
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=45.80 E-value=5.5 Score=36.86 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=8.1
Q ss_pred CCCcHHHHHHHHH-HHh
Q 042869 2 GGIGKTTLVKEVG-RQV 17 (707)
Q Consensus 2 gGiGKTtLa~~v~-~~~ 17 (707)
.|+||||+++.+. ...
T Consensus 36 ~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 36 SGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CC----CHHHHHHC---
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 5999999999998 643
No 500
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=45.75 E-value=8.9 Score=32.76 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHHH
Q 042869 2 GGIGKTTLVKEVGRQ 16 (707)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (707)
+|+|||||...+.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 12 GGVGKSALTVQFVQG 26 (167)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 689999999999864
Done!