Your job contains 1 sequence.
>042872
MDCHDFEFEKARLLSLALEFGFDQDSANKSLNRLISLYGDDGQDFISVEHCGDDFIATLA
ETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDNDNSREYIDILDDSPEPKRRP
TLMELDSLSDTEDLDFTIPKQKDAILNLSSCPDGRSQIFTPSSVKHSSKSVDCKSGVSTS
SASSVSNKKRSSLISDNEHGTLSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAK
QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQH
YFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVV
VLPHTCQRQLAGFVVDEAHCV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042872
(381 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 404 3.2e-42 2
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 152 1.6e-09 3
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 158 5.2e-09 2
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 147 8.9e-09 2
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 160 9.2e-09 2
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 161 3.2e-08 3
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 157 3.4e-08 1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 153 7.7e-08 1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 153 7.7e-08 1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 120 1.3e-07 4
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 144 1.4e-07 2
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 144 1.4e-07 2
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 120 2.6e-07 3
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 144 2.6e-07 4
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 141 2.7e-07 2
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 144 3.4e-07 3
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 120 3.5e-07 3
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 120 4.3e-07 3
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 120 4.4e-07 3
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 120 4.4e-07 3
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 120 4.5e-07 3
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 120 5.1e-07 4
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 138 5.6e-07 3
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 142 6.4e-07 3
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 140 2.3e-06 1
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 129 5.3e-06 2
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 137 6.1e-06 2
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 128 1.2e-05 2
UNIPROTKB|F5H2L2 - symbol:RECQL "ATP-dependent DNA helica... 108 1.6e-05 1
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 123 1.6e-05 1
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 132 2.0e-05 1
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 125 2.0e-05 2
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 131 2.2e-05 1
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 128 4.5e-05 1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 128 4.6e-05 1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 128 4.6e-05 1
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 129 4.8e-05 2
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 120 5.2e-05 3
UNIPROTKB|F8WA66 - symbol:RECQL "ATP-dependent DNA helica... 117 6.6e-05 1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 130 9.0e-05 2
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 125 0.00011 1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 128 0.00011 2
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 129 0.00011 2
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 123 0.00013 2
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 125 0.00013 2
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 113 0.00016 4
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 123 0.00018 1
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 129 0.00020 2
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 121 0.00029 1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 119 0.00044 1
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 118 0.00057 1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 118 0.00062 1
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 404 (147.3 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 116/335 (34%), Positives = 162/335 (48%)
Query: 23 DQDSANKSLNRLISLYGDDGQDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESEACGA 82
DQD + + RLISL G D S + C D F+ + D ++ ++ + A
Sbjct: 3 DQDLELEKV-RLISLATKLGFDEDSAKKCLDRFVDLYGD---DGRDFITVELCGDDFLAA 58
Query: 83 LNNMFD-KRVIDNNQANDNDNSREYIDILDDSPEPKRRPTXXXXXXXXXXXXXXFTI--- 138
L + + D+ QA +++ ++ D S P
Sbjct: 59 LADFEEGTEEWDDIQAIESEAQGNLAEMFDKSTNPSDNGFDTDDDDDDSRVEVHVIEDSP 118
Query: 139 -PKQKDAILNLSSCPDGRSQIFTPSSVKHSSKSVDCXXXXXXXXXXXXXXXXXXXXXXDN 197
PK+K I+ L S D + T V S++ N
Sbjct: 119 EPKKKPEIVELDSSSD-LEDVETRFKVPRRSQTCSRSMDYSMEDSVSTISGRKPSVQISN 177
Query: 198 -EHGTLSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLC 256
+H T S+EELQALDD+EFAN+VIFGN+ FRPLQHQAC+AS+ ++DCFVL+PTGGGKSLC
Sbjct: 178 KDHETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLC 237
Query: 257 YQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGL---VLSQHYFLHQLIFVLTCA 313
YQ + LK G+ ++ ++ Q V L+ G+ L+ Q VL
Sbjct: 238 YQ---LPATLKAGVTIV-ISPLLSLIQDQIVALNLKFGIPATFLNSQQTSSQAAAVLQ-E 292
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKG 348
R+D PSCKLLYVTPE+I G+ SF E L+CL RKG
Sbjct: 293 LRRDNPSCKLLYVTPEKIAGSSSFLETLRCLDRKG 327
Score = 349 (127.9 bits), Expect = 9.8e-36, Sum P(2) = 9.8e-36
Identities = 68/124 (54%), Positives = 91/124 (73%)
Query: 1 MDCHDFEFEKARLLSLALEFGFDQDSANKSLNRLISLYGDDGQDFISVEHCGDDFIATLA 60
M D E EK RL+SLA + GFD+DSA K L+R + LYGDDG+DFI+VE CGDDF+A LA
Sbjct: 1 MKDQDLELEKVRLISLATKLGFDEDSAKKCLDRFVDLYGDDGRDFITVELCGDDFLAALA 60
Query: 61 ETMQDSEEWDDLQAMESEACGALNNMFDKRV--IDN--NQANDNDNSREYIDILDDSPEP 116
+ + +EEWDD+QA+ESEA G L MFDK DN + +D+D+SR + +++DSPEP
Sbjct: 61 DFEEGTEEWDDIQAIESEAQGNLAEMFDKSTNPSDNGFDTDDDDDDSRVEVHVIEDSPEP 120
Query: 117 KRRP 120
K++P
Sbjct: 121 KKKP 124
Score = 64 (27.6 bits), Expect = 3.2e-42, Sum P(2) = 3.2e-42
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 370 LAGFVVDEAHCV 381
LAGFVVDEAHCV
Sbjct: 329 LAGFVVDEAHCV 340
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 152 (58.6 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 54/167 (32%), Positives = 80/167 (47%)
Query: 196 DNEHGTLSFE-ELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKS 254
DN+ L + E L +E N IFGN+ FR LQ +A + + +D FV LPTGGGKS
Sbjct: 450 DNDKNNLKLKREWHEL--VETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKS 507
Query: 255 LCYQDQIIT--LNLKFGIPATFLNSQQTVSQAAAV---LQELRQ-GLVLSQHYFLHQLIF 308
LC+Q I + F I Q V + ++ + + G L QL+
Sbjct: 508 LCFQIPSIVDHRGVTFVISPLLALMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLN 567
Query: 309 VLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVL 355
TC KL+Y+TPER+ ++ F +L L+ +G +R V+
Sbjct: 568 GETC-------KLKLIYITPERLAQSE-FLHLLDQLYDQGRLRRLVV 606
Score = 56 (24.8 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 26/88 (29%), Positives = 40/88 (45%)
Query: 40 DDGQDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESEACGALNNMF-----DKRVIDN 94
D+ D IS+E+ ++ L +T E D++ +E NN+ +K+ +
Sbjct: 256 DNNHDKISIEYDENE----LKKTYNLDENGDNI--VEMSPAFKNNNLLIKKSKNKKTKQS 309
Query: 95 NQA--NDNDNSREYIDILDDSPEPKRRP 120
N NDNDN YID DD E +P
Sbjct: 310 NIDIDNDNDNVDNYIDN-DDDDETIDKP 336
Score = 48 (22.0 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 367 QRQLAGFVVDEAHCV 381
Q +L VVDEAHC+
Sbjct: 598 QGRLRRLVVDEAHCI 612
Score = 45 (20.9 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 21/96 (21%), Positives = 46/96 (47%)
Query: 12 RLLSLALEFGFDQDSANKSLNRLISLYGDDGQDFIS-VEHCGDDFIATLAETMQDSEE-W 69
+L+S ++ F + + SL + ++ Y +DF S + ++F + Q++EE +
Sbjct: 8 KLISRSI-FNKTNERSTLSLFQSLNYYYK--RDFTSEINKTNNNF-----DNCQNNEEGY 59
Query: 70 DDLQAMESEACGALNNMFDKRVIDNNQANDNDNSRE 105
+ + + + NN + DN+ N+N+N E
Sbjct: 60 NVINNNKKNKNNSNNNNVEYNENDNSNNNNNNNKNE 95
Score = 42 (19.8 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 92 IDNNQANDNDNSREYIDILDDSPE 115
I NN+ +DN N+ D +D E
Sbjct: 148 ISNNEISDNSNNNNLKDKENDEIE 171
Score = 42 (19.8 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 84 NNMFDKRVIDNNQANDNDNSREYID 108
NN VI+NN+ N N+++ ++
Sbjct: 54 NNEEGYNVINNNKKNKNNSNNNNVE 78
Score = 42 (19.8 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 54 DFIATLAETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDNDNSREY 106
DF + + +T + +D+ Q E E +NN +K+ N+ N N+N+ EY
Sbjct: 37 DFTSEINKT---NNNFDNCQNNE-EGYNVINN--NKK----NKNNSNNNNVEY 79
Score = 42 (19.8 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 17/85 (20%), Positives = 38/85 (44%)
Query: 38 YGDDGQDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESEACGALNNMFDKRV----ID 93
Y DD ++++ +D+ T+ + +E+ + + + G++ N +K + I
Sbjct: 198 YDDD-----NIDNESNDYTTTIIQ----NEDHNTFSSTTTTTRGSIKNKRNKSLKKEEIQ 248
Query: 94 NNQANDNDNSREYIDILDDSPEPKR 118
+ DN+ + I I D E K+
Sbjct: 249 KQHEENQDNNHDKISIEYDENELKK 273
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 43 QDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDNDN 102
Q I +++ D+ + + D E D + +S++ + K+ D N+ + D
Sbjct: 308 QSNIDIDNDNDN-VDNYIDNDDDDETIDKPKKSKSKSTTKSKKINVKKQDDENEEEEEDE 366
Query: 103 SRE 105
E
Sbjct: 367 DEE 369
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 158 (60.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 46/140 (32%), Positives = 70/140 (50%)
Query: 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGI- 270
+E N +FGN +FRP Q + A+++ D FVL+PTGGGKSL YQ +I + I
Sbjct: 441 LEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVIS 500
Query: 271 PATFLNSQQTVS--QAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTP 328
P L Q ++ QA L G+ ++ + Q + + KLLYVTP
Sbjct: 501 PLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQEL-------NSEHSKYKLLYVTP 553
Query: 329 ERIVGNQSFSEVLKCLHRKG 348
E++ + S L+ L+ +G
Sbjct: 554 EKVAKSDSLLRHLENLNSRG 573
Score = 55 (24.4 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 370 LAGFVVDEAHCV 381
LA FV+DEAHCV
Sbjct: 575 LARFVIDEAHCV 586
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 147 (56.8 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 40/128 (31%), Positives = 61/128 (47%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ + + G+ +
Sbjct: 352 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ---LPACVSSGVTIVISPLRSL 408
Query: 281 VSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSE 339
+ L L L+ + + S+KD P KLLYVTPE++ +
Sbjct: 409 IVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKD-PIIKLLYVTPEKVCASNRLIS 467
Query: 340 VLKCLHRK 347
L+ L+ +
Sbjct: 468 TLENLYNR 475
Score = 56 (24.8 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 475 RKLLARFVIDEAHCV 489
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 160 (61.4 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 52/154 (33%), Positives = 72/154 (46%)
Query: 196 DNEHGTLSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSL 255
DN +F Q + D+ N +FG FR Q + +++ D FVL+PTGGGKSL
Sbjct: 500 DNSRFKGNFPWSQKIIDI---NRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSL 556
Query: 256 CYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQ-GLVLSQHYFLHQLIFVLTCAS 314
CYQ I L K G+ ++ L+ L LS I V
Sbjct: 557 CYQ--IPALYQK-GLTIVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDVYKDI- 612
Query: 315 RKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKG 348
R + P +LLY+TPER+V + S E+L L +KG
Sbjct: 613 RSNSPKIRLLYLTPERVVKSDSLIEILANLDQKG 646
Score = 51 (23.0 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 61 ETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDNDNS 103
E + S+E +++ + E L N + +NN N+N+N+
Sbjct: 276 EKQRISDELQEIKKSKKELIKLLENALNNNNNNNNNNNNNNNN 318
Score = 41 (19.5 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 84 NNMFDKRVIDNNQANDNDNSREYIDI 109
NN + +NN N+N++S Y +I
Sbjct: 311 NNNNNNNNNNNNNNNNNNSSNNYNNI 336
Score = 38 (18.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 62 TMQDSEEWDDLQAMESEACGALNNMF 87
T D +E ++ + S C + N+F
Sbjct: 41 TFDDCDEINEKSTIASTGCKDIKNIF 66
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 84 NNMFDKRVIDNNQANDNDNS 103
NN + +NN N+N+NS
Sbjct: 310 NNNNNNNNNNNNNNNNNNNS 329
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 161 (61.7 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 46/132 (34%), Positives = 68/132 (51%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGI-PATFLNSQ 278
FG ++FRP Q Q A++ DCFVL+PTGGGKSLCYQ I+T + I P L
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 279 QTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFS 338
Q +++ A++ ++ + + + S+ P KLLYVTPE+I + F
Sbjct: 793 Q-INKLASL--DICAKSLSGEQKMADVMAIYRDLESQP--PMVKLLYVTPEKISSSARFQ 847
Query: 339 EVLKCLHRKGSI 350
+ L L+ I
Sbjct: 848 DTLDTLNSNNYI 859
Score = 50 (22.7 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 370 LAGFVVDEAHCV 381
++ FV+DEAHCV
Sbjct: 859 ISRFVIDEAHCV 870
Score = 37 (18.1 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 98 NDNDNSREYIDILDDSPEP 116
N + +R ++ L DSP P
Sbjct: 209 NKENGNRHHLLTLPDSPPP 227
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 157 (60.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 47/135 (34%), Positives = 68/135 (50%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG+ FR Q +A +A V+ +DCF L+PTGGGKS+CYQ I K GI
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQ---IPALAKPGIVLVVSPLIAL 88
Query: 281 VSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASR---KDKPSCKLLYVTPERIVGNQSF 337
+ L+E +G+ +++ Q V KPS +LLYVTPE ++ + F
Sbjct: 89 MENQVMALKE--KGIA-AEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPE-LIATKGF 144
Query: 338 SEVLKCLHRKGSIRL 352
L+ LH +G + L
Sbjct: 145 MLKLRKLHSRGLLNL 159
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 153 (58.9 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 47/150 (31%), Positives = 73/150 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+F + FRPLQ + A++A++D F+++PTGGGKSLCYQ + + G
Sbjct: 86 VFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFS 338
+ VLQ+L +L+ + V T K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNS-HLKLIYVTPEKIAKSKMFM 201
Query: 339 EVLKCLHRKGSIRLKVLTTDVVVLPHTCQR 368
L+ + G RL + D V H C +
Sbjct: 202 SRLEKAYEAG--RLTGVAVDEV---HCCSQ 226
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 153 (58.9 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 47/150 (31%), Positives = 73/150 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+F + FRPLQ + A++A++D F+++PTGGGKSLCYQ + + G
Sbjct: 86 VFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFS 338
+ VLQ+L +L+ + V T K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNS-HLKLIYVTPEKIAKSKMFM 201
Query: 339 EVLKCLHRKGSIRLKVLTTDVVVLPHTCQR 368
L+ + G RL + D V H C +
Sbjct: 202 SRLEKAYEAG--RLTGVAVDEV---HCCSQ 226
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 120 (47.3 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ
Sbjct: 654 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ 691
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE++ + L+ L+ +
Sbjct: 745 SKKD-PIIKLLYVTPEKVCASNRLISTLENLYER 777
Score = 60 (26.2 bits), Expect = 4.1e-07, Sum P(4) = 4.1e-07
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L F IPAT+L +T S+AA + LQ ++ ++ Y + + CAS +
Sbjct: 713 DQVQKLT-SFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKV----CASNRL 767
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 768 ISTLENLY 775
Score = 56 (24.8 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 777 RKLLARFVIDEAHCV 791
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 47 SVEHCGDDFIATLAETMQDSEEWDDL 72
S+++C D F L+ E + L
Sbjct: 613 SIQNCSDKFAQNLSSKNPKHEHFQSL 638
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 144 (55.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 42/129 (32%), Positives = 62/129 (48%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG +FR Q +A A++ +DCF+L+PTGGGKSLCYQ + + G+ +
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ---LPACVSAGVTVVISPLRSL 449
Query: 281 VSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSE 339
+ L+ L L+ S+KD P KLLYVTPE++ +
Sbjct: 450 IIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKD-PIIKLLYVTPEKVCASNRLLS 508
Query: 340 VLKCLH-RK 347
L+ L+ RK
Sbjct: 509 ALENLYDRK 517
Score = 56 (24.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 516 RKLLARFVIDEAHCV 530
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 144 (55.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 42/129 (32%), Positives = 62/129 (48%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG +FR Q +A A++ +DCF+L+PTGGGKSLCYQ + + G+ +
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ---LPACVSAGVTVVISPLRSL 449
Query: 281 VSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSE 339
+ L+ L L+ S+KD P KLLYVTPE++ +
Sbjct: 450 IIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKD-PIIKLLYVTPEKVCASNRLLS 508
Query: 340 VLKCLH-RK 347
L+ L+ RK
Sbjct: 509 ALENLYDRK 517
Score = 56 (24.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 516 RKLLARFVIDEAHCV 530
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 120 (47.3 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ 700
Score = 66 (28.3 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE+I + L+ L+ +
Sbjct: 754 SKKD-PIIKLLYVTPEKICASNRLISTLENLYER 786
Score = 56 (24.8 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 786 RKLLARFVIDEAHCV 800
Score = 51 (23.0 bits), Expect = 8.0e-06, Sum P(3) = 8.0e-06
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L IPAT+L +T S+A + LQ ++ ++ Y + I CAS +
Sbjct: 722 DQVQKLT-SLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKI----CASNRL 776
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 777 ISTLENLY 784
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 144 (55.7 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 45/136 (33%), Positives = 65/136 (47%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG FR Q +A AS+ +D FVL+PTGGGKSLCYQ + + G+ +
Sbjct: 655 FGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQ---LPACVSAGVTVVISPLRSL 711
Query: 281 VSQAAAVLQELRQ-GLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSE 339
+ L L LS + + SRKD P+ KLLY TPE++ +
Sbjct: 712 IVDQVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKD-PAIKLLYATPEKVCASGRMIS 770
Query: 340 VLKCLHRKGSI-RLKV 354
L+ L+ +G + RL +
Sbjct: 771 ALQNLYERGLLARLVI 786
Score = 49 (22.3 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
LA V+DEAHCV
Sbjct: 781 LARLVIDEAHCV 792
Score = 45 (20.9 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 88 DKRVIDNNQANDNDNSREYIDILDDSPEPK 117
+ VID++ +N++ + D + SP P+
Sbjct: 270 EPNVIDSDDCEENNHYEGFEDFIPPSPIPE 299
Score = 40 (19.1 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 139 PKQKDAILNLSSCPDGRSQIFTPSSVKHSSKS 170
P ++ L++S S+ TP++ K SS+S
Sbjct: 296 PIPEEISLSVSDKEKSSSEPVTPANKKESSRS 327
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 141 (54.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 43/131 (32%), Positives = 60/131 (45%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG FR Q Q +++ D FVL+PTG GKSLCYQ + L G+ +
Sbjct: 243 FGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILP---GVTVVVSPLRSL 299
Query: 281 VSQAAAVLQELRQG---LVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSF 337
+ ++EL G L + I+ + PS KLLYVTPE+I +
Sbjct: 300 IEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGN---PSIKLLYVTPEKISASGRL 356
Query: 338 SEVLKCLHRKG 348
+ V LHR+G
Sbjct: 357 NSVFFDLHRRG 367
Score = 55 (24.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 370 LAGFVVDEAHCV 381
LA FV+DEAHCV
Sbjct: 369 LARFVIDEAHCV 380
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 144 (55.7 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 42/129 (32%), Positives = 62/129 (48%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG +FR Q +A A++ +DCF+L+PTGGGKSLCYQ + + G+ +
Sbjct: 631 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ---LPACVSAGVTVVISPLRSL 687
Query: 281 VSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSE 339
+ L+ L L+ S+KD P KLLYVTPE++ +
Sbjct: 688 IIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKD-PIIKLLYVTPEKVCASNRLLS 746
Query: 340 VLKCLH-RK 347
L+ L+ RK
Sbjct: 747 ALENLYDRK 755
Score = 56 (24.8 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 754 RKLLARFVIDEAHCV 768
Score = 39 (18.8 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 17/81 (20%), Positives = 34/81 (41%)
Query: 39 GDDGQDFISVEHCGDDFIATLAET-MQDSEEWDDLQAMESEAC--GALNNMFDKRVIDNN 95
G I + G A L++ M+++ D + ES+ G ++ + + N
Sbjct: 173 GSSQGSLICLGDAGAPAAAVLSDNGMEEARAATDGGSGESQKLSNGEKSSQLEPGDVGNE 232
Query: 96 QANDND-NSREYIDILDDSPE 115
D + +Y+D++ SPE
Sbjct: 233 LLADIELEEDDYLDVVPPSPE 253
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 120 (47.3 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ 700
Score = 66 (28.3 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE+I + L+ L+ +
Sbjct: 754 SKKD-PIIKLLYVTPEKICASNRLISTLENLYER 786
Score = 56 (24.8 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 786 RKLLARFVIDEAHCV 800
Score = 51 (23.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L IPAT+L +T S+A + LQ ++ ++ Y + I CAS +
Sbjct: 722 DQVQKLT-SLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKI----CASNRL 776
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 777 ISTLENLY 784
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 120 (47.3 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ
Sbjct: 652 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ 689
Score = 65 (27.9 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE++ + L+ L+ +
Sbjct: 743 SKKD-PIIKLLYVTPEKVCASNRLLSTLENLYER 775
Score = 56 (24.8 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 775 RKLLARFVIDEAHCV 789
Score = 54 (24.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L IPAT+L +T S+A ++ LQ ++ ++ Y + + CAS +
Sbjct: 711 DQVQKLT-SLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKV----CASNRL 765
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 766 LSTLENLY 773
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 120 (47.3 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ
Sbjct: 671 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ 708
Score = 65 (27.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE++ + L+ L+ +
Sbjct: 762 SKKD-PIIKLLYVTPEKVCASNRLISTLENLYER 794
Score = 60 (26.2 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L F IPAT+L +T S+AA + LQ ++ ++ Y + + CAS +
Sbjct: 730 DQVQKLT-SFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKV----CASNRL 784
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 785 ISTLENLY 792
Score = 56 (24.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 794 RKLLARFVIDEAHCV 808
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 120 (47.3 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ 700
Score = 65 (27.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE++ + L+ L+ +
Sbjct: 754 SKKD-PIIKLLYVTPEKVCASNRLISTLENLYER 786
Score = 56 (24.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 786 RKLLARFVIDEAHCV 800
Score = 53 (23.7 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L IPAT+L +T S+A ++ LQ ++ ++ Y + + CAS +
Sbjct: 722 DQVQKLT-SLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKV----CASNRL 776
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 777 ISTLENLY 784
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 120 (47.3 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ
Sbjct: 665 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQ 702
Score = 65 (27.9 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE++ + L+ L+ +
Sbjct: 756 SKKD-PIIKLLYVTPEKVCASNRLLSTLENLYER 788
Score = 56 (24.8 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 367 QRQLAGFVVDEAHCV 381
++ LA FV+DEAHCV
Sbjct: 788 RKLLARFVIDEAHCV 802
Score = 54 (24.1 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L IPAT+L +T S+A ++ LQ ++ ++ Y + + CAS +
Sbjct: 724 DQVQKLT-SLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKV----CASNRL 778
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 779 LSTLENLY 786
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 120 (47.3 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FR Q +A A + +DCF+L+PTGGGKSLCYQ
Sbjct: 615 FGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQ 652
Score = 62 (26.9 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK 347
S+KD P KLLYVTPE++ + ++ L+ +
Sbjct: 706 SKKD-PIIKLLYVTPEKVCASTRLISTMENLYER 738
Score = 58 (25.5 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 367 QRQL-AGFVVDEAHCV 381
+RQL A FV+DEAHCV
Sbjct: 737 ERQLLARFVIDEAHCV 752
Score = 53 (23.7 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQGLVLSQHYFLHQLIFVLTCASRKD 317
DQ+ L IPAT+L +T ++AA++ LQ ++ ++ Y + + CAS +
Sbjct: 674 DQVQKLT-SLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKV----CASTRL 728
Query: 318 KPSCKLLY 325
+ + LY
Sbjct: 729 ISTMENLY 736
Score = 38 (18.4 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 67 EEWDDLQAMES 77
EEWDDL ++
Sbjct: 141 EEWDDLDDFDT 151
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 138 (53.6 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 41/129 (31%), Positives = 63/129 (48%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGIPATFLNSQQ 279
F + FR Q +A +++ +D F+L+PTGGGKSLCYQ +I G+
Sbjct: 515 FHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLS 574
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFS 338
+ L++L L LS + V++ K+ KLLYVTPE + N + +
Sbjct: 575 LMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNV-LVKLLYVTPEGLASNGAIT 633
Query: 339 EVLKCLHRK 347
VLK L+ +
Sbjct: 634 RVLKSLYER 642
Score = 51 (23.0 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 361 VLPHTCQRQL-AGFVVDEAHCV 381
VL +R+L A V+DEAHCV
Sbjct: 635 VLKSLYERKLLARIVIDEAHCV 656
Score = 48 (22.0 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 84 NNMFDKRVIDNNQANDNDNSREYIDILDD-SPEP 116
NN+ R+ +NN N+NDN+ I+ D SP P
Sbjct: 217 NNLPFPRLNNNNTNNNNDNNA--IEKRDSASPTP 248
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 142 (55.0 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 44/151 (29%), Positives = 80/151 (52%)
Query: 199 HGTLSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
HGTL + + D++ A F R FRP Q +A ++++ +D FVL+PTGGGKSLCYQ
Sbjct: 675 HGTL-WGQHPWTKDVKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQ 733
Query: 259 -DQIITLNLKFGIP---ATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVL-TCA 313
+I+ G+ + L+ Q Q + + Q + +++ + +++ T +
Sbjct: 734 LPSVISSGSTRGVTLVISPLLSLMQ--DQVSHLRQNKIKAYLINGDTPSEERQWIMSTLS 791
Query: 314 SRKDKPSCKLLYVTPERIVGNQSFSEVLKCL 344
S + +LLY+TPE I + + ++ ++ L
Sbjct: 792 SHNPETHIELLYITPEMISKSHALTDRIEKL 822
Score = 50 (22.7 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 368 RQLAGFVVDEAHCV 381
++LA V+DEAHCV
Sbjct: 826 QKLARVVIDEAHCV 839
Score = 46 (21.3 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 87 FDKRVIDNNQANDNDNSREYIDILDDSPEPKRRP 120
FD V+D + DN +E D EP RP
Sbjct: 621 FDMDVLDEDILEAADNCQEEQPFTKDRHEPCSRP 654
Score = 43 (20.2 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 18/77 (23%), Positives = 39/77 (50%)
Query: 43 QDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDNDN 102
QD +++ +DF + A + + +E+D+L ++E N+ +KR + +D +
Sbjct: 166 QDIDTID-LTEDFDSN-ALSSEIRKEFDELHRRQTEDAAPRTNLTNKR--GKKRKSDEEA 221
Query: 103 SREYIDILDDSPEPKRR 119
S +++ + EP RR
Sbjct: 222 S-DFLPLR----EPTRR 233
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 140 (54.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/150 (29%), Positives = 71/150 (47%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+F + FRPLQ + ++A++D F+++PTGGGKSLCYQ + + G
Sbjct: 86 VFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFS 338
+ VL++L +L+ + +V K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS-QLKLIYVTPEKIAKSKMFM 201
Query: 339 EVLKCLHRKGSIRLKVLTTDVVVLPHTCQR 368
L+ + G RL D V H C +
Sbjct: 202 SRLEKAYEAG--RLTGAAVDEV---HCCSQ 226
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 129 (50.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 45/129 (34%), Positives = 61/129 (47%)
Query: 220 IFGNRAFR-PLQHQACKASV-AKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGI-PATFL 275
+FG +F+ PLQ A A V +D FV +PTG GKSLCYQ ++ + I P L
Sbjct: 19 VFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVISPLIAL 78
Query: 276 NSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQ 335
Q A + LS +L+ L ++KP KLLY+TPE + +
Sbjct: 79 IQDQVDHLLALKIHVCSLNSKLSAQE-RKELLSDL----EQEKPRTKLLYITPE-MAASA 132
Query: 336 SFSEVLKCL 344
SF LK L
Sbjct: 133 SFQPTLKSL 141
Score = 46 (21.3 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
L+ VVDEAHCV
Sbjct: 147 LSYLVVDEAHCV 158
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 137 (53.3 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 42/128 (32%), Positives = 62/128 (48%)
Query: 220 IFGNRAFR-PLQHQACKASV-AKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGIPATFLN 276
+FG +F+ PLQ A A V +D FV +PTG GKSLCYQ ++ + +
Sbjct: 23 VFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAKGITIVVSPLIAL 82
Query: 277 SQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQS 336
Q V A+ ++ L+ + + +L+ R DKP KLLY+TPE + + S
Sbjct: 83 IQDQVDHLLALKVQVSS---LNSKLSVQERKELLSDLER-DKPRTKLLYITPE-MAASAS 137
Query: 337 FSEVLKCL 344
F L L
Sbjct: 138 FQPTLNSL 145
Score = 46 (21.3 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
L+ VVDEAHCV
Sbjct: 151 LSYLVVDEAHCV 162
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 128 (50.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 41/128 (32%), Positives = 62/128 (48%)
Query: 220 IFGNRAFRP-LQHQACKASV-AKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGIPATFLN 276
+FG +F+ LQ A A V ++D FV +PTG GKSLCYQ ++ + + I
Sbjct: 28 VFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIAL 87
Query: 277 SQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQS 336
Q V A+ +++ + S+ + + AS +KP KLLY+TPE + S
Sbjct: 88 IQDQVDHLLAL--KIKACSLNSKLSAQEKKTILADLAS--EKPQIKLLYITPEMAAAS-S 142
Query: 337 FSEVLKCL 344
F L L
Sbjct: 143 FQPTLNSL 150
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
L+ ++DEAHCV
Sbjct: 156 LSYLIIDEAHCV 167
>UNIPROTKB|F5H2L2 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026 EMBL:AC006559
HGNC:HGNC:9948 ChiTaRS:RECQL IPI:IPI01012611
ProteinModelPortal:F5H2L2 SMR:F5H2L2 Ensembl:ENST00000542432
ArrayExpress:F5H2L2 Bgee:F5H2L2 Uniprot:F5H2L2
Length = 131
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
+F FRPLQ + ++A ++ F+++PTGGGKSLCYQ
Sbjct: 86 VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQ 124
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 123 (48.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 36/124 (29%), Positives = 60/124 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+F FRPLQ + ++A ++ F+++PTGGGKSLCYQ + + G
Sbjct: 86 VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFS 338
+ VL++L +L+ + +V K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS-ELKLIYVTPEKIAKSKMFM 201
Query: 339 EVLK 342
L+
Sbjct: 202 SRLE 205
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 54/177 (30%), Positives = 82/177 (46%)
Query: 198 EHGTLSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCY 257
E+ + +FE DD+ F NV FG +R Q + A + +D V++ GGGKSLCY
Sbjct: 65 ENWSETFEWDSRADDVRF-NV--FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCY 121
Query: 258 QDQIITLNLKFGI-----PATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTC 312
Q + L+ G P L Q + AA + +L+ FV
Sbjct: 122 Q---LPAMLRGGTTLVVSPLLSLIQDQVMGLAALGIS----AYMLTSTSGKENEKFVYK- 173
Query: 313 ASRKDKPSCKLLYVTPERIVGNQSF-SEVLKCLHRKGSIRLKVLTTDVVVLPHTCQR 368
A K + K+LYVTPE++ ++ F S++ KC H G RL +++ D H C +
Sbjct: 174 ALEKGEDDLKILYVTPEKVSKSKRFMSKLEKC-HNAG--RLSLISIDEA---HCCSQ 224
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 125 (49.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 49/135 (36%), Positives = 67/135 (49%)
Query: 220 IFGNRAFR-PLQHQACKASV-AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277
+FG +F+ PLQ A A V +D FV +PTG GKSLCYQ + L K GI T +
Sbjct: 23 VFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQ--LPALLAK-GI--TIV-- 75
Query: 278 QQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKD--------KPSCKLLYVTPE 329
VS A++Q+ L L+ + L L+ RK+ KP K+LY+TPE
Sbjct: 76 ---VSPLIALIQDQVDHL-LTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPE 131
Query: 330 RIVGNQSFSEVLKCL 344
+ + SF L L
Sbjct: 132 -MAASSSFQPTLNSL 145
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
L+ VVDEAHCV
Sbjct: 151 LSYLVVDEAHCV 162
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 131 (51.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 45/145 (31%), Positives = 69/145 (47%)
Query: 226 FRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAA 285
FRPLQ A A ++K+D V+L TGGGKSLCYQ + N G+ V
Sbjct: 110 FRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLAN---GLALVVSPLISLVEDQI 166
Query: 286 AVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCL 344
L+ L L+ + + V + KD +LLYVTPE++ ++ +++ L
Sbjct: 167 LQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDS-KFRLLYVTPEKLAKSK---KMMNKL 222
Query: 345 HRKGSIR-LKVLTTDVVVLPHTCQR 368
+ S+ LK++ D V H C +
Sbjct: 223 EKSLSVGFLKLIAIDEV---HCCSQ 244
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 128 (50.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 39/114 (34%), Positives = 57/114 (50%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLN-LKFGI-PATFLNSQ 278
FG + FRP Q + ++ +DC V++PTGGGKSLCYQ + LN L + P L
Sbjct: 21 FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD 80
Query: 279 QTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIV 332
Q V Q A + + S QL + C + + +LLY+ PER++
Sbjct: 81 Q-VDQLQA--NGVAAACLNSTQTREQQLEVMTGCRTGQ----IRLLYIAPERLM 127
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 128 (50.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 41/128 (32%), Positives = 62/128 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLN---LKFGIPATFLN 276
+FG + FR Q + +A++A +D V++PTGGGKSLCYQ + L L + +
Sbjct: 32 VFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLMK 91
Query: 277 SQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQS 336
Q +A V E + + +LI + +R KLLYV+PER++
Sbjct: 92 DQVDQLKANGVAAECVNSTLARE-----ELIAIY---NRMHAGQLKLLYVSPERVL-TAE 142
Query: 337 FSEVLKCL 344
F E L L
Sbjct: 143 FIERLSHL 150
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 128 (50.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 41/128 (32%), Positives = 62/128 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLN---LKFGIPATFLN 276
+FG + FR Q + +A++A +D V++PTGGGKSLCYQ + L L + +
Sbjct: 32 VFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLMK 91
Query: 277 SQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQS 336
Q +A V E + + +LI + +R KLLYV+PER++
Sbjct: 92 DQVDQLKANGVAAECVNSTLARE-----ELIAIY---NRMHAGQLKLLYVSPERVL-TAE 142
Query: 337 FSEVLKCL 344
F E L L
Sbjct: 143 FIERLSHL 150
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 129 (50.5 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 42/131 (32%), Positives = 63/131 (48%)
Query: 220 IFGNRAFR-PLQHQACKASV-AKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGIPATFLN 276
+FG +F+ PLQ +A A V +D FV +PTG GKSLCYQ ++ + +
Sbjct: 22 VFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIAL 81
Query: 277 SQQTVSQAAAV---LQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVG 333
Q V A+ + L L + + +L+ L ++KP KLLY+TPE +
Sbjct: 82 IQDQVDHLLALKVRVSSLNSKLSVQER---KELLSDL----EQEKPQTKLLYITPE-MAA 133
Query: 334 NQSFSEVLKCL 344
+ SF L L
Sbjct: 134 STSFQPTLNSL 144
Score = 46 (21.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
L+ VVDEAHCV
Sbjct: 150 LSYLVVDEAHCV 161
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 120 (47.3 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 39/126 (30%), Positives = 63/126 (50%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGI---PATFLNS 277
FG +FRP Q + K +++ D F+ + TG GKSLC+Q + LN K I P L +
Sbjct: 297 FGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLN-KTAIVVSPLVSLIT 355
Query: 278 QQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGN-QS 336
QT+ + ++ + + ++LIF K L+Y+TPERI+ QS
Sbjct: 356 DQTLKLKSLGIKVTKLSSDIKSSSKEYELIF---------KGYYNLVYITPERIINEYQS 406
Query: 337 FSEVLK 342
E+++
Sbjct: 407 IGELVR 412
Score = 53 (23.7 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 44 DFISVE-HCGDDFIATLAETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDNDN 102
DFI+ + H DD+I + M D ++ + + NN +K+ +NN N+N+N
Sbjct: 109 DFINNDNHIDDDYINNYIDQMNDINNNNNNKNNNN------NNNNNKKNNNNNNNNNNNN 162
Query: 103 S 103
+
Sbjct: 163 N 163
Score = 46 (21.3 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 84 NNMFDKRVIDNNQANDNDNSREYIDILDD 112
N+ FD I+N+ D+D YID ++D
Sbjct: 104 NDYFDD-FINNDNHIDDDYINNYIDQMND 131
Score = 44 (20.5 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 373 FVVDEAHCV 381
F +DEAHC+
Sbjct: 419 FAIDEAHCI 427
Score = 42 (19.8 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 74 AMESEACGALNNMFDKRVIDNNQANDNDN 102
+++ + +NN K +NN NDNDN
Sbjct: 179 SVDQQITKIINN---KNNNNNNNNNDNDN 204
Score = 40 (19.1 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 94 NNQANDNDNSREYIDI 109
NN N+N+N + I+I
Sbjct: 192 NNNNNNNNNDNDNIEI 207
Score = 40 (19.1 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 93 DNNQANDNDNSREYIDIL 110
+NN N ND + I+IL
Sbjct: 276 NNNNNNYNDEDNKIIEIL 293
Score = 40 (19.1 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 76 ESEACGALNNMFDKRVIDNNQANDNDN 102
E E +NN D++ +N N+NDN
Sbjct: 12 EEEESLTINNN-DQQQQQSNYNNENDN 37
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 117 (46.2 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 34/113 (30%), Positives = 55/113 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+F FRPLQ + ++A ++ F+++PTGGGKSLCYQ + + G
Sbjct: 86 VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERI 331
+ VL++L +L+ + +V K+ KL+YVTPE+I
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS-ELKLIYVTPEKI 194
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 130 (50.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 42/132 (31%), Positives = 66/132 (50%)
Query: 226 FRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAA 285
FR LQ + A++A +D F+++PTGGGKSLCYQ + + G +
Sbjct: 92 FRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCSD---GFTLVICPLISLMEDQL 148
Query: 286 AVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPS-CKLLYVTPERIVGNQSFSEVLKC 343
VL +L +L+ + +V A D+ S KLLYVTPE+I ++ F L+
Sbjct: 149 MVLDQLGISATLLNASSSKEHVKWVH--AQMLDRNSQLKLLYVTPEKIAKSKMFMSKLEK 206
Query: 344 LHRKGSI-RLKV 354
++ G + R+ V
Sbjct: 207 AYQAGCLARIAV 218
Score = 38 (18.4 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 370 LAGFVVDEAHC 380
LA VDE HC
Sbjct: 213 LARIAVDEVHC 223
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 39/137 (28%), Positives = 65/137 (47%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+F FRPLQ + ++A ++ F+++PTGGGKSLCYQ + + G
Sbjct: 86 VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSF- 337
+ VL++L +L+ + +V K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS-ELKLIYVTPEKIAKSKMFM 201
Query: 338 SEVLKCLHRKGSIRLKV 354
S + K + R+ V
Sbjct: 202 SRLEKAYEARRFTRIAV 218
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 128 (50.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 41/128 (32%), Positives = 62/128 (48%)
Query: 220 IFGNRAFRP-LQHQACKASV-AKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGIPATFLN 276
+FG +F+ LQ A A V ++D FV +PTG GKSLCYQ ++ + + I
Sbjct: 28 VFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIAL 87
Query: 277 SQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQS 336
Q V A+ +++ + S+ + + AS +KP KLLY+TPE + S
Sbjct: 88 IQDQVDHLLAL--KIKACSLNSKLSAQEKKTILADLAS--EKPQIKLLYITPEMAAAS-S 142
Query: 337 FSEVLKCL 344
F L L
Sbjct: 143 FQPTLNSL 150
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
L+ ++DEAHCV
Sbjct: 156 LSYLIIDEAHCV 167
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 129 (50.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 49/164 (29%), Positives = 76/164 (46%)
Query: 201 TLSFEELQALDDMEFA-------NVV-IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGG 252
+ S ++LQ +D +F+ N+ IF FRPLQ A S++ +D F+++PTG G
Sbjct: 65 SFSKQDLQHYEDSDFSWSKEVQVNLCNIFQLSKFRPLQRAAINLSMSGKDLFLVMPTGRG 124
Query: 253 KSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLT 311
KSLCYQ + L K G + LQ + + L+ +L
Sbjct: 125 KSLCYQ--LPALCSK-GFTLVIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSKRILA 181
Query: 312 CASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSI-RLKV 354
+ K+ P KLLYVTPE+I ++ L+ G + R+ V
Sbjct: 182 GMTDKNSPF-KLLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAV 224
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 370 LAGFVVDEAHC 380
LA VDE HC
Sbjct: 219 LARIAVDEVHC 229
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 123 (48.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
FG FRPLQ + + +A +D FVL+PTGGGKSLCYQ
Sbjct: 13 FGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQ 50
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 369 QLAGFVVDEAHCV 381
+LA +DEAHCV
Sbjct: 131 KLALVAIDEAHCV 143
Score = 39 (18.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 316 KDKPSCKLLYVTPERIVGNQSFSEVLKCLHR 346
+D +C + +PE G + L C++R
Sbjct: 387 EDCGNCDICLNSPETYNGTIEAQKALSCVYR 417
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 125 (49.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 49/135 (36%), Positives = 67/135 (49%)
Query: 220 IFGNRAFR-PLQHQACKASV-AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277
+FG +F+ PLQ A A V +D FV +PTG GKSLCYQ + L K GI T +
Sbjct: 23 VFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQ--LPALLAK-GI--TIV-- 75
Query: 278 QQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKD--------KPSCKLLYVTPE 329
VS A++Q+ L L+ + L L+ RK+ KP K+LY+TPE
Sbjct: 76 ---VSPLIALIQDQVDHL-LTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPE 131
Query: 330 RIVGNQSFSEVLKCL 344
+ + SF L L
Sbjct: 132 -MAASSSFQPTLNSL 145
Score = 46 (21.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 370 LAGFVVDEAHCV 381
L+ VVDEAHCV
Sbjct: 151 LSYLVVDEAHCV 162
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 113 (44.8 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
+F FRP Q +A A++ +D FVL+PTGGGKSLCYQ
Sbjct: 673 VFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQ 711
Score = 51 (23.0 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 369 QLAGFVVDEAHCV 381
+LA VVDEAHCV
Sbjct: 801 KLARIVVDEAHCV 813
Score = 49 (22.3 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 41 DGQDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDN 100
+GQ+ I VEH I L + ++ DD + + D +ID+ + N++
Sbjct: 502 NGQNQIGVEH-----IDLLEDDLEKDAILDDSMSFSFGRQHMPMSHSDLELIDSEKENED 556
Query: 101 ---DNSREYIDILDDS 113
DN+ I+ L DS
Sbjct: 557 FEEDNNNNGIEYLSDS 572
Score = 44 (20.5 bits), Expect = 0.00048, Sum P(4) = 0.00048
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 89 KRVIDNN---QANDNDNSREYIDILDDSPE 115
K+ I NN +N++ N+ + I +LDD +
Sbjct: 303 KQNITNNTGKNSNNDSNNDDLIQVLDDEDD 332
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 323 LLYVTPERIVGNQSFSEVLKCLHRKGSI 350
L+Y++PE I ++ + L+ G +
Sbjct: 775 LVYISPEMISASEQCKRAISRLYADGKL 802
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
IF + FRPLQ + +++ ++ F+++PTGGGKSLCYQ + + G
Sbjct: 86 IFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSF- 337
+ VL++L +L+ + +V K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS-KLKLIYVTPEKIAKSKMFM 201
Query: 338 SEVLKCLHRKGSIRLKV 354
S + K + R+ +
Sbjct: 202 SRLEKAYEARRFTRIAI 218
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 129 (50.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 41/128 (32%), Positives = 60/128 (46%)
Query: 220 IFGNRAFR-PLQHQACKASV-AKQDCFVLLPTGGGKSLCYQ-DQIITLNLKFGIPATFLN 276
+FG +F+ PLQ A A V +D FV +PTG GKSLCYQ ++ + +
Sbjct: 19 VFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIAL 78
Query: 277 SQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQS 336
Q V A+ + L+ + +L+ R +KP KLLY+TPE + + S
Sbjct: 79 IQDQVDHLLALKVRVSS---LNSKLSAQEKKELLSDLER-EKPQTKLLYITPE-MAASPS 133
Query: 337 FSEVLKCL 344
F L L
Sbjct: 134 FQPTLNSL 141
Score = 40 (19.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1 MDCHDFEFEKARLLSLALEFGFD 23
M H F+ E+ +L FGFD
Sbjct: 1 MSAHPFDRERRVRSTLKKVFGFD 23
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+F + FRPLQ + +++ ++ F+++PTGGGKSLCYQ + + G
Sbjct: 86 VFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSF- 337
+ VL++L +L+ + +V K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSPKEHVKWVHAEMVNKNS-KLKLIYVTPEKIAKSKMFM 201
Query: 338 SEVLKCLHRKGSIRLKV 354
S + K + R+ V
Sbjct: 202 SRLEKAYEARRFTRIAV 218
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 43/125 (34%), Positives = 60/125 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+FG R+FRP Q + D FVL+PTGGGKSLCYQ I +L ++ G+
Sbjct: 12 VFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQ--IPSL-VRPGVGIVI---SP 65
Query: 280 TVSQAAAVLQELRQGLVLSQHY--FLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSF 337
+S + LR+ V + Y L + A R LLYV PER++ +F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRRVLA-RLHGGELDLLYVAPERLM-TDAF 123
Query: 338 SEVLK 342
E L+
Sbjct: 124 LERLR 128
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 118 (46.6 bits), Expect = 0.00057, P = 0.00057
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
+FG R FR Q + + +DC V++PTGGGKSLCYQ + ++ + + ++ +
Sbjct: 20 VFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLISLMK 79
Query: 280 TVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSE 339
Q ++LQ L+ + VL + KLLYV+PER++ F E
Sbjct: 80 --DQVDSLLQTGVNAAYLNSSQPRELSLEVLR---QLHLGELKLLYVSPERLL-TADFIE 133
Query: 340 VLKCL 344
++ L
Sbjct: 134 RMQSL 138
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 118 (46.6 bits), Expect = 0.00062, P = 0.00062
Identities = 39/137 (28%), Positives = 65/137 (47%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279
IF + FR LQ + +++ +D F+++PTGGGKSLCYQ + + G
Sbjct: 86 IFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSD---GFTLVICPLIS 142
Query: 280 TVSQAAAVLQELR-QGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSF- 337
+ VL++L +L+ + +V K+ KL+YVTPE+I ++ F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMINKNS-KLKLIYVTPEKIAKSKMFM 201
Query: 338 SEVLKCLHRKGSIRLKV 354
S + K + R+ V
Sbjct: 202 SRLEKAYEARRFTRIAV 218
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 381 345 0.00097 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 610 (65 KB)
Total size of DFA: 233 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.80u 0.10s 27.90t Elapsed: 00:00:02
Total cpu time: 27.81u 0.10s 27.91t Elapsed: 00:00:02
Start: Sat May 11 05:49:23 2013 End: Sat May 11 05:49:25 2013