BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042872
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 203/414 (49%), Positives = 250/414 (60%), Gaps = 107/414 (25%)
Query: 1 MDCHDFEFEKARLLSLALEFGFDQDSANKSLNRLISLYGDDGQDFISVEHCGDDFIATLA 60
M D E EK RL+SLA + GFD+DSA K L+R + LYGDDG+DFI+VE CGDDF+A LA
Sbjct: 1 MKDQDLELEKVRLISLATKLGFDEDSAKKCLDRFVDLYGDDGRDFITVELCGDDFLAALA 60
Query: 61 ETMQDSEEWDDLQAMESEACGALNNMFDKRVIDNNQANDNDN----------SREYIDIL 110
+ + +EEWDD+QA+ESEA G L MFDK N +DN SR + ++
Sbjct: 61 DFEEGTEEWDDIQAIESEAQGNLAEMFDK------STNPSDNGFDTDDDDDDSRVEVHVI 114
Query: 111 DDSPEPKRRPTLMELDSLSDTEDLD--FTIPKQKDAILNLSSCPDGRSQIFTPSSVKHSS 168
+DSPEPK++P ++ELDS SD ED++ F +P+ RSQ S
Sbjct: 115 EDSPEPKKKPEIVELDSSSDLEDVETRFKVPR--------------RSQT--------CS 152
Query: 169 KSVDCKSGVSTSSASSVSNKKRSSLISDNEHGTLSFEELQALDDMEFANVVIFGNRAFRP 228
+S+D S S++S +K S IS+ +H T S+EELQALDD+EFAN+VIFGN+ FRP
Sbjct: 153 RSMDYSM---EDSVSTISGRKPSVQISNKDHETPSYEELQALDDLEFANLVIFGNKVFRP 209
Query: 229 LQHQACKASVAKQDCFVLLPTGGGKSLCY---------------------QDQIITLNLK 267
LQHQAC+AS+ ++DCFVL+PTGGGKSLCY QDQI+ LNLK
Sbjct: 210 LQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQDQIVALNLK 269
Query: 268 FGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVT 327
FGIPATFLNSQQT SQAAAVLQEL R+D PSCKLLYVT
Sbjct: 270 FGIPATFLNSQQTSSQAAAVLQEL-----------------------RRDNPSCKLLYVT 306
Query: 328 PERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381
PE+I G+ SF E L+CL RKG LAGFVVDEAHCV
Sbjct: 307 PEKIAGSSSFLETLRCLDRKG--------------------LLAGFVVDEAHCV 340
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 65/182 (35%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------D 259
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ D
Sbjct: 671 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 730
Query: 260 QIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKP 319
Q+ L F IPAT+L +T S+AA + +L S+KD P
Sbjct: 731 QVQKLT-SFDIPATYLTGDKTDSEAANIYLQL----------------------SKKD-P 766
Query: 320 SCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379
KLLYVTPE++ + L+ L+ + + LA FV+DEAH
Sbjct: 767 IIKLLYVTPEKVCASNRLISTLENLYER--------------------KLLARFVIDEAH 806
Query: 380 CV 381
CV
Sbjct: 807 CV 808
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 85/201 (42%), Gaps = 65/201 (32%)
Query: 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCY---- 257
S E +E N +FGN +FRP Q + A+++ D FVL+PTGGGKSL Y
Sbjct: 430 WSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPA 489
Query: 258 -----------------QDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQH 300
QDQI+ L L+ IPA L++ ++ + QEL S+H
Sbjct: 490 LICGGITLVISPLVSLIQDQIMNL-LQANIPAASLSAGMEWAEQLKIFQELN-----SEH 543
Query: 301 YFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVV 360
KLLYVTPE++ + S L+ L+ +G
Sbjct: 544 ------------------SKYKLLYVTPEKVAKSDSLLRHLENLNSRG------------ 573
Query: 361 VLPHTCQRQLAGFVVDEAHCV 381
LA FV+DEAHCV
Sbjct: 574 --------LLARFVIDEAHCV 586
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 79/182 (43%), Gaps = 65/182 (35%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------D 259
FG FR Q +A A++ +DCF+L+PTGGGKSLCYQ D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Query: 260 QIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKP 319
Q+ L IPAT+L +T S+A + +L S+KD P
Sbjct: 723 QVQKLT-SLDIPATYLTGDKTDSEATNIYLQL----------------------SKKD-P 758
Query: 320 SCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379
KLLYVTPE+I + L+ L+ + + LA FV+DEAH
Sbjct: 759 IIKLLYVTPEKICASNRLISTLENLYER--------------------KLLARFVIDEAH 798
Query: 380 CV 381
CV
Sbjct: 799 CV 800
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 65/191 (34%)
Query: 212 DMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCY-------------- 257
++E N ++FGN +FRP Q + A+++ D FVL+PTGGGKSL Y
Sbjct: 456 NLEVYNKLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVI 515
Query: 258 -------QDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVL 310
QDQI+ L L+ I A L++ ++ +LQEL
Sbjct: 516 SPLVSLIQDQIMNL-LQTNISAASLSAGMEWAEQLEILQELSS----------------- 557
Query: 311 TCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQL 370
+K KLLYVTPE++ ++S L+ L+ + L
Sbjct: 558 ------EKSKYKLLYVTPEKVAKSESLLRHLEILNSRS--------------------LL 591
Query: 371 AGFVVDEAHCV 381
A FV+DEAHCV
Sbjct: 592 ARFVIDEAHCV 602
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 81/183 (44%), Gaps = 67/183 (36%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------D 259
FG FR Q +A A + +DCF+L+PTGGGKSLCYQ D
Sbjct: 615 FGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVD 674
Query: 260 QIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKP 319
Q+ L IPAT+L +T ++AA++ +L S+KD P
Sbjct: 675 QVQKLT-SLDIPATYLTGDKTDAEAASIYLQL----------------------SKKD-P 710
Query: 320 SCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQ-LAGFVVDEA 378
KLLYVTPE++ + ++ L+ +RQ LA FV+DEA
Sbjct: 711 IIKLLYVTPEKVCASTRLISTMENLY---------------------ERQLLARFVIDEA 749
Query: 379 HCV 381
HCV
Sbjct: 750 HCV 752
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 113/280 (40%), Gaps = 82/280 (29%)
Query: 140 KQKDAILNLSSCPDGRSQIFTPSSVKHSSKSVDCKSGVST----SSASSVSNKKRSSL-- 193
K K+ +N+S DG + + S++ KS VS+ +S S V K+ S+L
Sbjct: 635 KHKETPINISLDDDGFPEYDEAMFEQMHSQAAANKSRVSSAGPSTSKSVVPTKQTSALHS 694
Query: 194 --ISDNEHGTLSFEELQA-LDDMEFANVV--------IFGNRAFRPLQHQACKASVAKQD 242
+S N H + + + D +F + FG ++FRP Q Q A++ D
Sbjct: 695 QKLSGNFHANVHNDGITGEFDGQKFEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGND 754
Query: 243 CFVLLPTGGGKSLCYQ---------------------DQIITLNLKFGIPATFLNSQQTV 281
CFVL+PTGGGKSLCYQ DQI L I A L+ +Q +
Sbjct: 755 CFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFDQINKL-ASLDICAKSLSGEQKM 813
Query: 282 SQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVL 341
+ A+ ++L P KLLYVTPE+I + F + L
Sbjct: 814 ADVMAIYRDLES-----------------------QPPMVKLLYVTPEKISSSARFQDTL 850
Query: 342 KCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381
L+ I + FV+DEAHCV
Sbjct: 851 DTLNSNNYI--------------------SRFVIDEAHCV 870
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 66/182 (36%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------D 259
FG+ FR Q +A +A V+ +DCF L+PTGGGKS+CYQ +
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLIALMEN 91
Query: 260 QIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKP 319
Q++ L K GI A +L+S Q + ++L G KP
Sbjct: 92 QVMALKEK-GIAAEYLSSTQATHVKNKIHEDLDSG-----------------------KP 127
Query: 320 SCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379
S +LLYVTPE ++ + F L+ LH +G + L +DEAH
Sbjct: 128 SVRLLYVTPE-LIATKGFMLKLRKLHSRGLLNL--------------------IAIDEAH 166
Query: 380 CV 381
C+
Sbjct: 167 CI 168
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 77/182 (42%), Gaps = 65/182 (35%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------D 259
FG +FR Q +A A++ +DCF+L+PTGGGKSLCYQ D
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 452
Query: 260 QIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKP 319
Q+ L I AT+L T + A+ +L S+KD P
Sbjct: 453 QVQKLKT-LDIAATYLTGDITDADASKTYMQL----------------------SKKD-P 488
Query: 320 SCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379
KLLYVTPE++ + L+ L+ + + LA FV+DEAH
Sbjct: 489 IIKLLYVTPEKVCASNRLLSALENLYDR--------------------KLLARFVIDEAH 528
Query: 380 CV 381
CV
Sbjct: 529 CV 530
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG FR Q Q +++ D FVL+PTG GKSLCYQ + L G+ +
Sbjct: 243 FGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILP---GVTVVVSPLRSL 299
Query: 281 VSQAAAVLQELRQG---LVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSF 337
+ ++EL G L + I+ + PS KLLYVTPE+I +
Sbjct: 300 IEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSG---NPSIKLLYVTPEKISASGRL 356
Query: 338 SEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381
+ V LHR+G LA FV+DEAHCV
Sbjct: 357 NSVFFDLHRRG--------------------LLARFVIDEAHCV 380
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 65/182 (35%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ--------------------- 258
+F + FRPLQ + A++A++D F+++PTGGGKSLCYQ
Sbjct: 86 VFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLME 145
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDK 318
DQ++ L + GI AT LNS + V E+ ++++ L
Sbjct: 146 DQLMVLQ-QLGISATMLNSSSSKEHVKCVHTEM-----MNKNSHL--------------- 184
Query: 319 PSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEA 378
KL+YVTPE+I ++ F L+ + G +L G VDE
Sbjct: 185 ---KLIYVTPEKIAKSKMFMSRLEKAYEAG--------------------RLTGVAVDEV 221
Query: 379 HC 380
HC
Sbjct: 222 HC 223
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 74/186 (39%), Gaps = 69/186 (37%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------- 258
F + FR Q +A +++ +D F+L+PTGGGKSLCYQ
Sbjct: 515 FHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLS 574
Query: 259 ---DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASR 315
DQ+ L K IP+ L+ +Q + V+ L VL
Sbjct: 575 LMQDQLDHLR-KLNIPSLPLSGEQPADERRQVISFLMAKNVL------------------ 615
Query: 316 KDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVV 375
KLLYVTPE + N + + VLK L+ + + LA V+
Sbjct: 616 -----VKLLYVTPEGLASNGAITRVLKSLYER--------------------KLLARIVI 650
Query: 376 DEAHCV 381
DEAHCV
Sbjct: 651 DEAHCV 656
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 72/182 (39%), Gaps = 65/182 (35%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ--------------------- 258
+F + FRPLQ + ++A++D F+++PTGGGKSLCYQ
Sbjct: 86 VFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLME 145
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDK 318
DQ++ L + GI AT LN+ + V E+
Sbjct: 146 DQLMVLK-QLGISATMLNASSSKEHVKWVHAEMVN-----------------------KN 181
Query: 319 PSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEA 378
KL+YVTPE+I ++ F L+ + G +L G VDE
Sbjct: 182 SQLKLIYVTPEKIAKSKMFMSRLEKAYEAG--------------------RLTGAAVDEV 221
Query: 379 HC 380
HC
Sbjct: 222 HC 223
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 52/173 (30%)
Query: 226 FRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------DQIITL 264
FRPLQ A A ++K+D V+L TGGGKSLCYQ DQI+ L
Sbjct: 87 FRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKGLTLVISPLVSLVEDQIMQL 146
Query: 265 NLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLL 324
K GI A LN+ +A V Q + +G +LL
Sbjct: 147 Q-KLGIDAASLNANTPKDEAKRVEQAITKG-----------------------STELRLL 182
Query: 325 YVTPERIVGNQS-FSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVD 376
YVTPE++ ++ +++ K L G LK++ D V H C + F D
Sbjct: 183 YVTPEKLAKSKRMMNQLEKSL---GVGYLKLIAIDEV---HCCSQWGHDFRTD 229
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 65/182 (35%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ--------------------- 258
+F FRPLQ + ++A ++ F+++PTGGGKSLCYQ
Sbjct: 86 VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLME 145
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDK 318
DQ++ L + GI AT LN+ + V E+
Sbjct: 146 DQLMVLK-QLGISATMLNASSSKEHVKWVHAEMVN-----------------------KN 181
Query: 319 PSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEA 378
KL+YVTPE+I ++ F L+ + R+ VDE
Sbjct: 182 SELKLIYVTPEKIAKSKMFMSRLEKAYEA--------------------RRFTRIAVDEV 221
Query: 379 HC 380
HC
Sbjct: 222 HC 223
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 74/187 (39%), Gaps = 71/187 (37%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCY---------------------- 257
+F FRP Q +A A++ +D FVL+PTGGGKSLCY
Sbjct: 673 VFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLI 732
Query: 258 ---QDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCAS 314
QDQ+ L L I A+ +S+ T Q RQ L F++ L+
Sbjct: 733 SLMQDQVEHL-LNKNIKASMFSSRGTAEQR-------RQTFNL----FINGLL------- 773
Query: 315 RKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFV 374
L+Y++PE I ++ + L+ G +LA V
Sbjct: 774 -------DLVYISPEMISASEQCKRAISRLYADG--------------------KLARIV 806
Query: 375 VDEAHCV 381
VDEAHCV
Sbjct: 807 VDEAHCV 813
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 86/216 (39%), Gaps = 80/216 (37%)
Query: 191 SSLISDNEHGTLSFEEL----QALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVL 246
SSL+S + + F E+ ALD + +FG ++FR Q + A++ +D V+
Sbjct: 4 SSLLSKDNKSAVDFHEIPLKQTALDVLH----AVFGYQSFRKGQEEVIDATLMGKDSLVI 59
Query: 247 LPTGGGKSLCYQ---------------------DQIITLNLKFGIPATFLNSQQTVSQAA 285
+ TG GKSLCYQ DQ+ L L GI A +LNS QT ++
Sbjct: 60 MATGNGKSLCYQIPALCFEGLTLVISPLISLMKDQVDQL-LANGIEADYLNSSQTFTEQQ 118
Query: 286 AVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLH 345
V +L G + KLLYV+PE
Sbjct: 119 QVQNKLMSG-------------------------TLKLLYVSPE---------------- 137
Query: 346 RKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381
KV+TT L C +++ +DEAHC+
Sbjct: 138 -------KVMTTSFFHLISHC--KVSFVAIDEAHCI 164
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 68/182 (37%), Gaps = 65/182 (35%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ--------------------- 258
+F + FRPLQ + ++A ++ F+++PTGGGK LCYQ
Sbjct: 86 VFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLISLME 145
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDK 318
DQ++ L + GI AT LN+ + V E+
Sbjct: 146 DQLMVLK-QLGISATMLNASSSKEHVKWVHAEMVN-----------------------KN 181
Query: 319 PSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEA 378
KL+YVTPE+I ++ F L+ + R+ VDE
Sbjct: 182 SELKLIYVTPEKIAKSKMFMSRLEKAYEA--------------------RRFTRIAVDEV 221
Query: 379 HC 380
HC
Sbjct: 222 HC 223
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 61/236 (25%)
Query: 164 VKHSSKSVDCKSGVST------SSASSVSNKKRSSLISDNEHGTLSFEELQALDDMEFAN 217
++H + + KS + T +S S V++ SS I E+ + +FE DD+ F
Sbjct: 28 IEHQDRLYERKSELKTLLKALAASGSPVASSGGSSAI---ENWSETFEWDSRADDVRFN- 83
Query: 218 VVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277
+FG +R Q + A + +D V++ GGGKSLCYQ +PA
Sbjct: 84 --VFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQ-----------LPAMLRGG 130
Query: 278 QQ-TVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPS------------CKLL 324
VS +++Q+ GL L ++LT S K+ K+L
Sbjct: 131 TTLVVSPLLSLIQDQVMGLAA-----LGISAYMLTSTSGKENEKFVYKALEKGEDDLKIL 185
Query: 325 YVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380
YVTPE++ ++ F L+ H G RL +++ +DEAHC
Sbjct: 186 YVTPEKVSKSKRFMSKLEKCHNAG--RLSLIS------------------IDEAHC 221
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 45/132 (34%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLN--------------- 265
FG + FRP Q + ++ +DC V++PTGGGKSLCYQ + LN
Sbjct: 21 FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD 80
Query: 266 -----LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPS 320
G+ A LNS QT Q V+ R G +
Sbjct: 81 QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQI------------------------ 116
Query: 321 CKLLYVTPERIV 332
+LLY+ PER++
Sbjct: 117 -RLLYIAPERLM 127
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 45/132 (34%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLN--------------- 265
FG + FRP Q +++ +DC V++PTGGGKSLCYQ + L+
Sbjct: 21 FGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKD 80
Query: 266 -----LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPS 320
L G+ A LNS Q+ Q V+ R G +
Sbjct: 81 QVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQI------------------------ 116
Query: 321 CKLLYVTPERIV 332
+LLY+ PER++
Sbjct: 117 -RLLYIAPERLM 127
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 42/172 (24%)
Query: 220 IFGNRAFR-PLQHQACKASV-AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277
+FG +F+ PLQ A A V +D FV +PTG GKSLCYQ +PA
Sbjct: 23 VFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQ-----------LPALLAKG 71
Query: 278 QQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRK--------DKPSCKLLYVTPE 329
V L + + +L+ + L L+ RK +KP K+LY+TPE
Sbjct: 72 ITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPE 131
Query: 330 RIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381
+ + SF L L + L+ VVDEAHCV
Sbjct: 132 -MAASSSFQPTLNSL--------------------VSRHLLSYLVVDEAHCV 162
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 58/139 (41%), Gaps = 47/139 (33%)
Query: 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ--------------------- 258
+FG ++FR Q + A++ QD V++ TG GKSLCYQ
Sbjct: 23 VFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISLMK 82
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDK 318
DQ+ L GI A FLNS QT+ Q V +L G
Sbjct: 83 DQVDQLQAN-GIEADFLNSSQTLEQQQQVQNKLISG------------------------ 117
Query: 319 PSCKLLYVTPERIVGNQSF 337
KLLYV+PE+++ N F
Sbjct: 118 -QLKLLYVSPEKVMTNSFF 135
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 52/173 (30%)
Query: 226 FRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------DQIITL 264
FRPLQ A A ++K+D V+L TGGGKSLCYQ DQI+ L
Sbjct: 110 FRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPLISLVEDQILQL 169
Query: 265 NLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLL 324
GI ++ LN+ + +A V + + KD +LL
Sbjct: 170 R-SLGIDSSSLNANTSKEEAKRVEDAI----------------------TNKD-SKFRLL 205
Query: 325 YVTPERIVGNQSFSEVLKCLHRKGSIR-LKVLTTDVVVLPHTCQRQLAGFVVD 376
YVTPE++ ++ +++ L + S+ LK++ D V H C + F D
Sbjct: 206 YVTPEKLAKSK---KMMNKLEKSLSVGFLKLIAIDEV---HCCSQWGHDFRTD 252
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 68/182 (37%)
Query: 219 VIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITL-------------- 264
+++G +FR Q QA K + ++LPTG GKSLCYQ + L
Sbjct: 263 LVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLM 322
Query: 265 -----NLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKP 319
+L I L+S Q +A L++L++G++
Sbjct: 323 IDQLKHLPSIIKGGLLSSSQRPEEATETLRKLKEGII----------------------- 359
Query: 320 SCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379
K+L+V+PER++ E L S+ L VVDEAH
Sbjct: 360 --KVLFVSPERLLN----VEFLSMFRMSLSVSL--------------------VVVDEAH 393
Query: 380 CV 381
CV
Sbjct: 394 CV 395
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 73/183 (39%)
Query: 221 FGNRAFRPLQHQACK-ASVAKQDCFVLLPTGGGKSLCYQ--------------------- 258
FG FR Q +A + + A+Q+ ++PTGGGKS+CYQ
Sbjct: 13 FGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMK 72
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDK 318
DQ+ L + GI A ++NS Q+ + L L++G
Sbjct: 73 DQVDALE-EAGINAAYINSTQSNQEIYERLNGLKEG------------------------ 107
Query: 319 PSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEA 378
+ KL Y+TPER+ + F +L+ + DV ++ +DEA
Sbjct: 108 -AYKLFYITPERLTSIE-FIRILQGI-------------DVPLV-----------AIDEA 141
Query: 379 HCV 381
HC+
Sbjct: 142 HCI 144
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 55/186 (29%)
Query: 205 EELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITL 264
E L AL++ FG++ FR Q + + +D FVL+ TG GKS+CYQ
Sbjct: 214 EALNALNEF-------FGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQ------ 260
Query: 265 NLKFGIPATFLNSQQTV---------SQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASR 315
+P+ LNS V Q ++ + + L H + V R
Sbjct: 261 -----LPSLLLNSMTVVVSPLISLMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVANNMHR 315
Query: 316 KDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVV 375
+ +Y++PE + +KG L++LT +C++ ++ +
Sbjct: 316 -----IRFIYMSPEMVTS------------QKG---LELLT--------SCRKHISLLAI 347
Query: 376 DEAHCV 381
DEAHCV
Sbjct: 348 DEAHCV 353
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 67/165 (40%), Gaps = 39/165 (23%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG + R Q +A VA +DC VL TG GKSLC+Q IPA L +
Sbjct: 164 FGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQ-----------IPA-LLTGKVV 211
Query: 281 VSQAAAVLQELRQGLVLSQHY----FLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQS 336
V + + Q L LS+H FL + + +++YV PE +V
Sbjct: 212 VVISPLISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVV---- 267
Query: 337 FSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381
++K L K+ T + L F +DEAHCV
Sbjct: 268 --RLIKPLQ-------KLAKTHGIAL----------FAIDEAHCV 293
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 39/165 (23%)
Query: 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280
FG +F+ Q ++ ++ +D +LPTGGGKSLCYQ +P L+
Sbjct: 12 FGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQ-----------LPGYMLDGMVL 60
Query: 281 VSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEV 340
+ L E + V +R +K + L ++ Q V
Sbjct: 61 IVSPLLSLMEDQ----------------VQQLKARGEKRAAAL-----NSMLNRQERQFV 99
Query: 341 LKCLHRKGSIRLKVLTTDVVVLPHTCQR----QLAGFVVDEAHCV 381
L+ +HR + L+ + + P+ ++ ++ FV+DEAHC+
Sbjct: 100 LEHIHR---YKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCI 141
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
+E A I+G FR Q + +A++DC V+LPTGGGKS+C+Q
Sbjct: 7 LEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQ 52
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 75/185 (40%)
Query: 219 VIFGNRAFRPLQHQACKASVA-KQDCFVLLPTGGGKSLCYQ------------------- 258
+ FG+ +F+P+Q + + + ++D ++ TG GKSLC+Q
Sbjct: 542 MYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLISL 601
Query: 259 --DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRK 316
DQ++ L + IPA FL S +Q+ VL +++ G
Sbjct: 602 MEDQVLQLKMS-NIPACFLGS----AQSENVLTDIKLG---------------------- 634
Query: 317 DKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVD 376
+++YVTPE GN L+ L D+ + VD
Sbjct: 635 ---KYRIVYVTPEYCSGNMGL--------------LQQLEADIGI---------TLIAVD 668
Query: 377 EAHCV 381
EAHC+
Sbjct: 669 EAHCI 673
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 215 FANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
F + G RAFRP Q +A ++ ++LPTG GKSLCYQ
Sbjct: 487 FQALERLGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQ 530
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 42.0 bits (97), Expect = 0.008, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 205 EELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258
E QAL+ + G++AFRP Q +A ++ ++LPTG GKSLCYQ
Sbjct: 468 EVFQALEQL--------GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQ 513
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 29/125 (23%)
Query: 219 VIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278
+++G FRP Q++ + +D +L T GKSLC+Q IPA +L+
Sbjct: 23 MVYGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQ-----------IPALYLDKP 71
Query: 279 QTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCAS---------RKD--KPSCKLLYVT 327
+ L E Q L +L C + RKD + K +YV+
Sbjct: 72 AIIISPLISLME-------DQRLILEKLGISSCCYNSNVENKAQMRKDIMQFKYKFIYVS 124
Query: 328 PERIV 332
PE +V
Sbjct: 125 PESVV 129
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 27/96 (28%)
Query: 221 FGNRAFRPLQHQACKASV-AKQDCFVLLPTGGGKSLCYQ--------------------- 258
FG+ +F+P+Q + + + ++D V++ TG GKSLCYQ
Sbjct: 485 FGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLISLME 544
Query: 259 DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294
DQ++ L + I + FL S +Q+ VLQ+++ G
Sbjct: 545 DQVLQLEMS-NISSCFLGS----AQSKNVLQDVKDG 575
>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp.
japonica GN=Os07g0647900 PE=2 SV=2
Length = 540
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 203 SFEEL---QALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQD 259
+FEEL D N+ G + P+Q QA ++ ++CF PTG GK+L +
Sbjct: 143 NFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLF 202
Query: 260 QI---ITLNLKFGIPATFL-NSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASR 315
I I K G+ A L +++ +Q ++L +G + +++ + L+ +
Sbjct: 203 PILMKIKPGSKEGVKAVILCPTRELAAQTTRECKKLAKG----RKFYIKLMTKDLSKSGN 258
Query: 316 KDKPSCKLLYVTPERI 331
C +L TP R+
Sbjct: 259 FKDMHCDILISTPLRL 274
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 23/82 (28%)
Query: 221 FGNRAFRPLQHQACKASVA-KQDCFVLLPTGGGKSLCYQ--------------------- 258
FG+ +F+P+Q + + + ++D V++ TG GKSLC+Q
Sbjct: 508 FGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLISLME 567
Query: 259 DQIITLNLKFGIPATFLNSQQT 280
DQ++ L L +PA L S Q+
Sbjct: 568 DQVLQLELS-NVPACLLGSAQS 588
>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana
GN=RH57 PE=2 SV=1
Length = 541
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 203 SFEELQALDDME---FANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQD 259
SF EL + E N+ G + P+Q QA ++ ++CF PTG GK+ +
Sbjct: 138 SFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAF-- 195
Query: 260 QIITLNLKFGIPATFLNSQQTVSQAAAV-LQELRQG--LVLSQHYFLHQLIFVLTCASRK 316
I + +K P+T +S A + Q R+G L+ ++ + + L +
Sbjct: 196 -ICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADF 254
Query: 317 DKPSCKLLYVTPERI 331
K C +L TP R+
Sbjct: 255 SKLWCDVLISTPMRL 269
>sp|A0QAA9|DISA_MYCA1 DNA integrity scanning protein DisA OS=Mycobacterium avium (strain
104) GN=disA PE=3 SV=1
Length = 357
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 7/44 (15%)
Query: 100 NDNSREYIDILD--DSPEP----KRRPTLMELDSLSDTEDLDFT 137
NDN+RE I + D SPEP + TL ELD+LSDTE LDFT
Sbjct: 225 NDNARELI-VRDYHASPEPLSEAQMTATLDELDALSDTELLDFT 267
>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=ROK1 PE=3 SV=2
Length = 537
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 203 SFEELQA---LDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCY 257
SFE+L A L+ AN++ G +Q +A AS +D PTG GK+L Y
Sbjct: 103 SFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAY 160
>sp|Q743W9|DISA_MYCPA DNA integrity scanning protein DisA OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=disA
PE=3 SV=1
Length = 357
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Query: 100 NDNSREYIDILDDSPEPKR------RPTLMELDSLSDTEDLDFT 137
NDN+RE I + D P++ TL ELD+LSDTE LDFT
Sbjct: 225 NDNARELI-VRDYHASPEQLSEAQMTATLDELDALSDTELLDFT 267
>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ROK1 PE=3 SV=2
Length = 550
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 203 SFEEL---QALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCY 257
SFE+L LD +N++ G P+Q +A S+ +D PTG GK+L +
Sbjct: 111 SFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGRDLIACAPTGSGKTLAF 168
>sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4
PE=2 SV=1
Length = 700
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 11/141 (7%)
Query: 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQI 261
L+FEE + + NV G P+Q + +A +D TG GK+ + I
Sbjct: 274 LTFEEANLCETLR-RNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPI 332
Query: 262 ITLNLKFGIPAT-FLNSQQTVSQAAAVLQELRQGLVLSQHYFLH----QLIFVLTC---- 312
++ + GI A+ +L Q+ + A +EL + L F + + + V
Sbjct: 333 LSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPV 392
Query: 313 -ASRKDKPSCKLLYVTPERIV 332
A R + C +L TP R++
Sbjct: 393 HAMRDVEKGCNILCATPGRLL 413
>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52
PE=2 SV=1
Length = 596
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 217 NVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLK----FGIPA 272
N++ G + P+Q QA + ++ PTG GK+L + I+ ++LK G A
Sbjct: 177 NILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPIL-MHLKQPTNKGFRA 235
Query: 273 TFLN-SQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERI 331
++ +++ SQ L +L +G H +H+ K +L TP R+
Sbjct: 236 LIISPTRELASQIHRELVKLSEGTGFRIH-MIHKAAVAAKKFGPKSSKKFDILVTTPNRL 294
Query: 332 V 332
+
Sbjct: 295 I 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,165,953
Number of Sequences: 539616
Number of extensions: 5542526
Number of successful extensions: 18953
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 18785
Number of HSP's gapped (non-prelim): 153
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)