Query 042872
Match_columns 381
No_of_seqs 286 out of 1637
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 99.9 1.3E-21 4.3E-26 204.3 12.3 126 212-381 31-177 (591)
2 1oyw_A RECQ helicase, ATP-depe 99.8 1.9E-21 6.6E-26 199.3 8.4 127 204-381 4-151 (523)
3 3fe2_A Probable ATP-dependent 99.8 2E-20 6.7E-25 171.1 12.0 54 204-258 31-84 (242)
4 3iuy_A Probable ATP-dependent 99.8 5E-20 1.7E-24 166.0 12.2 145 201-381 18-179 (228)
5 1vec_A ATP-dependent RNA helic 99.8 6E-20 2.1E-24 162.0 10.2 54 204-258 5-58 (206)
6 3ber_A Probable ATP-dependent 99.8 1.2E-19 4.1E-24 168.1 12.2 55 203-258 44-98 (249)
7 3ly5_A ATP-dependent RNA helic 99.8 1.7E-19 5.8E-24 168.2 11.0 45 213-258 65-109 (262)
8 2oxc_A Probable ATP-dependent 99.8 1.8E-19 6.3E-24 163.5 10.4 56 202-258 24-79 (230)
9 1qde_A EIF4A, translation init 99.8 2.5E-19 8.4E-24 160.4 10.1 75 202-277 14-90 (224)
10 1t6n_A Probable ATP-dependent 99.8 9.1E-19 3.1E-23 156.6 13.4 54 204-258 16-69 (220)
11 3bor_A Human initiation factor 99.8 2.2E-19 7.4E-24 164.0 8.7 150 202-381 30-185 (237)
12 2db3_A ATP-dependent RNA helic 99.8 3.8E-19 1.3E-23 176.7 10.9 149 203-381 57-215 (434)
13 1q0u_A Bstdead; DEAD protein, 99.8 9.5E-20 3.3E-24 163.6 5.2 148 204-381 6-162 (219)
14 2gxq_A Heat resistant RNA depe 99.8 1.1E-18 3.6E-23 153.8 11.6 141 204-381 3-156 (207)
15 2pl3_A Probable ATP-dependent 99.8 4.3E-19 1.5E-23 160.7 9.1 143 204-381 27-183 (236)
16 2j0s_A ATP-dependent RNA helic 99.8 2.4E-18 8.2E-23 166.1 14.2 56 202-258 37-92 (410)
17 1wrb_A DJVLGB; RNA helicase, D 99.8 7.7E-19 2.6E-23 160.9 9.6 54 204-258 25-78 (253)
18 3oiy_A Reverse gyrase helicase 99.8 1E-18 3.5E-23 170.3 9.5 119 210-381 7-151 (414)
19 3fmo_B ATP-dependent RNA helic 99.8 1.4E-18 4.7E-23 166.0 9.7 151 202-381 92-247 (300)
20 2i4i_A ATP-dependent RNA helic 99.8 3E-18 1E-22 165.1 11.9 55 203-258 16-70 (417)
21 3dkp_A Probable ATP-dependent 99.7 1.6E-17 5.5E-22 151.1 13.9 152 202-381 25-187 (245)
22 1xti_A Probable ATP-dependent 99.7 1.1E-17 3.9E-22 159.3 11.9 55 203-258 9-63 (391)
23 3eiq_A Eukaryotic initiation f 99.7 1.9E-17 6.6E-22 158.9 12.8 56 202-258 40-95 (414)
24 2z0m_A 337AA long hypothetical 99.7 1.9E-17 6.3E-22 154.0 11.6 45 213-258 5-49 (337)
25 1s2m_A Putative ATP-dependent 99.7 1.2E-17 4.1E-22 160.3 10.4 75 202-277 21-97 (400)
26 1fuu_A Yeast initiation factor 99.7 1.6E-17 5.6E-22 158.0 10.7 56 202-258 21-76 (394)
27 3sqw_A ATP-dependent RNA helic 99.7 5.6E-17 1.9E-21 166.4 12.6 78 200-278 15-104 (579)
28 1hv8_A Putative ATP-dependent 99.7 5.4E-17 1.9E-21 152.3 11.1 75 202-277 6-82 (367)
29 3i5x_A ATP-dependent RNA helic 99.7 8E-17 2.7E-21 163.2 12.4 77 201-278 67-155 (563)
30 3fht_A ATP-dependent RNA helic 99.7 1.4E-16 4.9E-21 152.4 10.8 150 203-381 26-180 (412)
31 3pey_A ATP-dependent RNA helic 99.7 9.9E-17 3.4E-21 151.9 8.9 139 212-381 15-157 (395)
32 2ykg_A Probable ATP-dependent 99.7 2.2E-16 7.6E-21 163.6 10.4 58 220-277 8-69 (696)
33 3fmp_B ATP-dependent RNA helic 99.6 5.5E-16 1.9E-20 154.3 10.1 148 203-381 93-247 (479)
34 4a2p_A RIG-I, retinoic acid in 99.6 7.8E-16 2.7E-20 153.3 10.3 57 222-278 4-64 (556)
35 4ddu_A Reverse gyrase; topoiso 99.6 7.4E-16 2.5E-20 171.4 11.0 119 210-381 64-208 (1104)
36 3tbk_A RIG-I helicase domain; 99.6 9.5E-16 3.3E-20 151.9 9.4 54 225-278 4-61 (555)
37 4a2q_A RIG-I, retinoic acid in 99.6 2.4E-15 8.1E-20 160.5 11.2 58 220-277 243-304 (797)
38 1gku_B Reverse gyrase, TOP-RG; 99.6 1.7E-15 5.9E-20 167.4 7.0 45 211-258 44-88 (1054)
39 4gl2_A Interferon-induced heli 99.5 2.9E-15 1E-19 155.3 6.7 126 225-381 7-148 (699)
40 3b6e_A Interferon-induced heli 99.5 2.4E-15 8.1E-20 132.2 5.0 58 221-278 29-91 (216)
41 2p6r_A Afuhel308 helicase; pro 99.5 2E-15 6.7E-20 158.6 5.2 143 203-381 2-150 (702)
42 2zj8_A DNA helicase, putative 99.5 2.3E-15 7.8E-20 158.5 5.5 143 204-381 3-150 (720)
43 1gm5_A RECG; helicase, replica 99.5 2.2E-14 7.5E-19 154.8 11.5 110 216-381 360-502 (780)
44 2va8_A SSO2462, SKI2-type heli 99.5 6.5E-15 2.2E-19 154.5 6.7 145 202-381 8-157 (715)
45 4a2w_A RIG-I, retinoic acid in 99.5 2E-14 6.7E-19 157.0 10.1 38 221-258 244-281 (936)
46 3l9o_A ATP-dependent RNA helic 99.5 1.4E-14 4.6E-19 161.4 8.0 122 221-381 181-302 (1108)
47 1tf5_A Preprotein translocase 99.5 3.5E-14 1.2E-18 154.1 10.6 115 213-381 72-215 (844)
48 4a4z_A Antiviral helicase SKI2 99.5 1.4E-14 4.8E-19 159.6 7.6 126 219-381 34-159 (997)
49 1wp9_A ATP-dependent RNA helic 99.5 1.2E-13 4.1E-18 132.3 12.4 52 225-277 9-60 (494)
50 2xgj_A ATP-dependent RNA helic 99.4 8.6E-14 3E-18 153.7 6.8 123 220-381 82-204 (1010)
51 3fho_A ATP-dependent RNA helic 99.4 3.8E-14 1.3E-18 143.8 3.5 131 221-381 137-271 (508)
52 1nkt_A Preprotein translocase 99.4 2.9E-13 9.9E-18 147.6 9.0 115 213-381 100-243 (922)
53 2fsf_A Preprotein translocase 99.4 3.8E-13 1.3E-17 146.0 9.6 114 213-381 63-206 (853)
54 4f92_B U5 small nuclear ribonu 99.4 6.5E-13 2.2E-17 153.5 9.1 57 221-277 922-980 (1724)
55 2eyq_A TRCF, transcription-rep 99.3 2.5E-12 8.5E-17 143.6 12.1 109 217-381 596-737 (1151)
56 1rif_A DAR protein, DNA helica 99.3 3.5E-12 1.2E-16 119.1 10.6 121 225-381 113-237 (282)
57 4f92_B U5 small nuclear ribonu 99.3 8.5E-13 2.9E-17 152.5 7.1 37 222-258 76-113 (1724)
58 2ipc_A Preprotein translocase 99.3 3.4E-12 1.2E-16 139.5 10.6 85 213-331 68-179 (997)
59 2fwr_A DNA repair protein RAD2 99.3 2E-12 6.8E-17 128.2 6.7 112 225-381 93-204 (472)
60 2oca_A DAR protein, ATP-depend 99.3 1.2E-11 4.3E-16 123.7 11.0 122 224-381 112-237 (510)
61 3llm_A ATP-dependent RNA helic 99.3 1.1E-11 3.7E-16 113.2 8.7 122 225-380 61-187 (235)
62 2fz4_A DNA repair protein RAD2 99.3 1.1E-11 3.7E-16 114.5 8.6 112 225-381 93-204 (237)
63 2jlq_A Serine protease subunit 99.2 1.7E-11 5.7E-16 123.0 5.2 119 222-381 1-122 (451)
64 3h1t_A Type I site-specific re 99.0 9.7E-11 3.3E-15 120.1 5.4 123 225-381 178-314 (590)
65 2wv9_A Flavivirin protease NS2 99.0 6.7E-11 2.3E-15 125.7 4.0 52 225-277 215-278 (673)
66 2whx_A Serine protease/ntpase/ 99.0 3E-10 1E-14 119.4 6.0 54 223-277 169-223 (618)
67 3o8b_A HCV NS3 protease/helica 99.0 4.3E-11 1.5E-15 127.4 -1.7 113 226-381 218-330 (666)
68 3crv_A XPD/RAD3 related DNA he 98.9 1E-09 3.5E-14 112.8 7.9 36 222-258 1-40 (551)
69 2vl7_A XPD; helicase, unknown 98.9 4.7E-10 1.6E-14 115.4 5.2 37 221-258 4-44 (540)
70 1z63_A Helicase of the SNF2/RA 98.9 3.3E-09 1.1E-13 105.8 9.1 120 225-381 37-161 (500)
71 3dmq_A RNA polymerase-associat 98.8 8.3E-10 2.8E-14 121.2 3.1 129 225-381 153-285 (968)
72 1yks_A Genome polyprotein [con 98.8 4.8E-09 1.6E-13 105.1 7.6 41 236-277 4-45 (440)
73 2w00_A HSDR, R.ECOR124I; ATP-b 98.7 1.3E-08 4.3E-13 113.2 8.3 53 225-277 271-338 (1038)
74 2z83_A Helicase/nucleoside tri 98.7 3.5E-08 1.2E-12 99.2 8.3 43 234-277 15-58 (459)
75 2xau_A PRE-mRNA-splicing facto 98.6 5.9E-08 2E-12 104.5 9.6 125 221-380 90-219 (773)
76 3mwy_W Chromo domain-containin 98.6 1E-07 3.5E-12 102.3 10.0 128 225-381 236-379 (800)
77 2v6i_A RNA helicase; membrane, 98.6 2.2E-07 7.5E-12 92.7 11.0 39 239-278 1-40 (431)
78 1z3i_X Similar to RAD54-like; 98.6 7E-08 2.4E-12 101.3 7.6 40 225-264 55-103 (644)
79 3rc3_A ATP-dependent RNA helic 98.5 1.3E-08 4.4E-13 108.5 0.9 24 234-257 149-172 (677)
80 3jux_A Protein translocase sub 98.2 2.5E-06 8.4E-11 92.4 9.1 62 213-277 64-152 (822)
81 4a15_A XPD helicase, ATP-depen 97.8 3.7E-05 1.3E-09 80.7 8.4 64 225-291 3-71 (620)
82 1w36_D RECD, exodeoxyribonucle 97.6 0.00017 5.7E-09 75.5 8.9 49 227-277 151-204 (608)
83 3te6_A Regulatory protein SIR3 96.5 0.0085 2.9E-07 58.4 9.6 53 227-279 25-90 (318)
84 3e1s_A Exodeoxyribonuclease V, 96.5 0.0056 1.9E-07 63.8 8.8 52 225-277 189-240 (574)
85 3upu_A ATP-dependent DNA helic 96.4 0.0057 1.9E-07 61.2 7.8 55 221-276 21-81 (459)
86 3ec2_A DNA replication protein 96.2 0.015 5E-07 50.0 8.1 49 228-276 17-74 (180)
87 2v1u_A Cell division control p 95.0 0.033 1.1E-06 52.3 6.3 39 240-278 44-87 (387)
88 1jbk_A CLPB protein; beta barr 94.9 0.14 4.6E-06 42.4 9.1 31 228-258 28-61 (195)
89 2chg_A Replication factor C sm 94.8 0.12 4E-06 43.9 8.6 17 241-257 39-55 (226)
90 4b3f_X DNA-binding protein smu 94.6 0.11 3.9E-06 54.1 9.6 64 225-291 189-253 (646)
91 3bos_A Putative DNA replicatio 94.4 0.031 1.1E-06 48.7 4.1 37 239-276 51-87 (242)
92 2p65_A Hypothetical protein PF 94.4 0.081 2.8E-06 44.0 6.5 19 240-258 43-61 (187)
93 1fnn_A CDC6P, cell division co 94.4 0.084 2.9E-06 49.7 7.4 35 242-277 46-81 (389)
94 3dm5_A SRP54, signal recogniti 94.1 0.24 8.3E-06 50.4 10.4 38 242-280 102-139 (443)
95 2qby_B CDC6 homolog 3, cell di 93.9 0.21 7E-06 47.2 8.9 18 241-258 46-63 (384)
96 3syl_A Protein CBBX; photosynt 93.8 0.17 5.7E-06 46.6 8.1 17 241-257 68-84 (309)
97 3vfd_A Spastin; ATPase, microt 93.8 0.13 4.5E-06 49.9 7.7 35 240-278 148-182 (389)
98 2w58_A DNAI, primosome compone 93.6 0.12 4.1E-06 44.8 6.3 35 241-276 55-89 (202)
99 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.18 6.1E-06 45.1 7.5 34 240-277 39-72 (262)
100 1l8q_A Chromosomal replication 93.4 0.19 6.4E-06 47.1 7.8 37 240-277 37-73 (324)
101 2gk6_A Regulator of nonsense t 93.3 0.13 4.5E-06 53.7 7.2 54 223-276 178-231 (624)
102 2q6t_A DNAB replication FORK h 93.2 0.72 2.5E-05 45.9 12.0 49 240-288 200-248 (444)
103 2r6a_A DNAB helicase, replicat 93.0 0.74 2.5E-05 45.9 11.7 49 239-287 202-250 (454)
104 1njg_A DNA polymerase III subu 92.9 0.056 1.9E-06 46.2 3.1 16 242-257 47-62 (250)
105 3uk6_A RUVB-like 2; hexameric 92.8 0.22 7.5E-06 47.0 7.3 19 240-258 70-88 (368)
106 2xzl_A ATP-dependent helicase 92.8 0.33 1.1E-05 52.6 9.5 67 223-291 358-424 (802)
107 2b8t_A Thymidine kinase; deoxy 92.5 0.11 3.7E-06 48.0 4.6 39 240-279 12-50 (223)
108 3b9p_A CG5977-PA, isoform A; A 92.5 0.29 1E-05 44.9 7.5 34 240-277 54-87 (297)
109 3h4m_A Proteasome-activating n 92.4 0.18 6.2E-06 46.0 5.9 34 239-276 50-83 (285)
110 2qby_A CDC6 homolog 1, cell di 92.2 0.11 3.8E-06 48.4 4.4 37 240-276 45-83 (386)
111 1u94_A RECA protein, recombina 92.1 0.48 1.6E-05 46.5 8.9 49 232-281 49-103 (356)
112 2qp9_X Vacuolar protein sortin 92.1 0.29 1E-05 47.2 7.3 33 240-276 84-116 (355)
113 2dr3_A UPF0273 protein PH0284; 91.9 0.77 2.6E-05 40.3 9.3 45 239-284 22-66 (247)
114 1xwi_A SKD1 protein; VPS4B, AA 91.9 0.42 1.4E-05 45.5 8.0 17 241-257 46-62 (322)
115 3pfi_A Holliday junction ATP-d 91.8 0.63 2.2E-05 43.5 9.1 33 241-277 56-88 (338)
116 3kl4_A SRP54, signal recogniti 91.7 0.57 1.9E-05 47.5 9.1 39 242-281 99-137 (433)
117 2wjy_A Regulator of nonsense t 91.6 0.55 1.9E-05 50.9 9.5 54 223-276 354-407 (800)
118 2ffh_A Protein (FFH); SRP54, s 91.6 1.1 3.8E-05 45.2 11.1 38 241-279 99-136 (425)
119 3u61_B DNA polymerase accessor 91.1 0.42 1.4E-05 44.5 7.0 34 242-279 49-83 (324)
120 1iqp_A RFCS; clamp loader, ext 91.1 0.5 1.7E-05 43.2 7.4 17 242-258 48-64 (327)
121 1j8m_F SRP54, signal recogniti 90.9 1.2 4.1E-05 42.3 10.1 37 242-279 100-136 (297)
122 1c4o_A DNA nucleotide excision 90.8 0.69 2.4E-05 48.8 9.0 64 222-292 6-74 (664)
123 1vma_A Cell division protein F 90.7 0.94 3.2E-05 43.4 9.2 38 241-279 105-142 (306)
124 2r2a_A Uncharacterized protein 90.7 0.12 4.2E-06 46.6 2.8 16 243-258 8-23 (199)
125 1jr3_A DNA polymerase III subu 90.6 0.24 8.3E-06 46.5 4.9 15 243-257 41-55 (373)
126 2cvh_A DNA repair and recombin 90.6 1 3.4E-05 38.9 8.5 36 240-279 20-55 (220)
127 1w5s_A Origin recognition comp 90.5 0.7 2.4E-05 43.8 8.0 18 241-258 51-70 (412)
128 4a1f_A DNAB helicase, replicat 90.4 0.68 2.3E-05 45.3 8.0 48 240-288 46-93 (338)
129 2j37_W Signal recognition part 90.3 1.4 4.9E-05 45.3 10.8 37 242-279 103-139 (504)
130 1hqc_A RUVB; extended AAA-ATPa 90.3 0.29 9.8E-06 45.2 5.0 33 241-277 39-71 (324)
131 3eie_A Vacuolar protein sortin 90.3 0.37 1.3E-05 45.5 5.8 33 240-276 51-83 (322)
132 1a5t_A Delta prime, HOLB; zinc 90.2 0.5 1.7E-05 45.0 6.7 32 227-258 4-42 (334)
133 2w0m_A SSO2452; RECA, SSPF, un 90.1 1.6 5.6E-05 37.5 9.5 44 239-283 22-65 (235)
134 2xxa_A Signal recognition part 90.1 0.98 3.4E-05 45.5 9.1 38 242-279 102-139 (433)
135 1xp8_A RECA protein, recombina 90.1 0.62 2.1E-05 45.9 7.5 49 233-282 61-115 (366)
136 3cf0_A Transitional endoplasmi 90.0 0.34 1.2E-05 45.4 5.3 34 239-276 48-81 (301)
137 2orw_A Thymidine kinase; TMTK, 90.0 0.68 2.3E-05 40.7 7.0 39 239-278 2-40 (184)
138 3d8b_A Fidgetin-like protein 1 89.6 0.35 1.2E-05 46.6 5.1 34 240-277 117-150 (357)
139 3t15_A Ribulose bisphosphate c 89.6 0.39 1.3E-05 45.1 5.3 33 241-277 37-69 (293)
140 1um8_A ATP-dependent CLP prote 89.5 0.31 1.1E-05 46.8 4.7 33 240-276 72-104 (376)
141 2zr9_A Protein RECA, recombina 89.4 0.72 2.5E-05 44.9 7.3 41 240-281 61-101 (349)
142 1sxj_B Activator 1 37 kDa subu 89.3 1.1 3.6E-05 41.0 7.9 16 242-257 44-59 (323)
143 2chq_A Replication factor C sm 89.3 0.68 2.3E-05 42.2 6.6 16 242-257 40-55 (319)
144 4b4t_J 26S protease regulatory 89.2 0.45 1.5E-05 48.0 5.8 71 200-277 143-215 (405)
145 3bh0_A DNAB-like replicative h 89.2 1.7 5.7E-05 41.3 9.5 51 240-291 68-118 (315)
146 2rb4_A ATP-dependent RNA helic 89.1 0.49 1.7E-05 40.5 5.2 44 251-294 34-83 (175)
147 2hjv_A ATP-dependent RNA helic 89.1 0.52 1.8E-05 39.9 5.3 28 267-294 57-84 (163)
148 3pvs_A Replication-associated 88.9 1.5 5.3E-05 44.0 9.5 33 241-277 51-83 (447)
149 1n0w_A DNA repair protein RAD5 88.9 1.4 4.8E-05 38.6 8.2 40 239-279 23-68 (243)
150 1sxj_D Activator 1 41 kDa subu 88.5 1.2 4.2E-05 41.2 7.9 18 241-258 59-76 (353)
151 2z43_A DNA repair and recombin 88.2 1.1 3.6E-05 42.7 7.5 48 233-280 95-152 (324)
152 1qvr_A CLPB protein; coiled co 88.2 0.72 2.5E-05 49.8 6.9 17 241-257 192-208 (854)
153 3eaq_A Heat resistant RNA depe 88.1 0.55 1.9E-05 41.8 5.0 28 267-294 53-80 (212)
154 2zts_A Putative uncharacterize 88.1 1.4 4.8E-05 38.6 7.6 49 239-287 29-77 (251)
155 1w4r_A Thymidine kinase; type 88.1 0.89 3.1E-05 41.5 6.5 38 240-278 20-57 (195)
156 2zan_A Vacuolar protein sortin 87.9 1 3.5E-05 44.9 7.3 34 240-277 167-201 (444)
157 2z4s_A Chromosomal replication 87.8 0.96 3.3E-05 45.1 7.1 38 240-277 130-168 (440)
158 3lfu_A DNA helicase II; SF1 he 87.7 0.47 1.6E-05 48.5 4.9 51 224-276 8-61 (647)
159 1t5i_A C_terminal domain of A 87.6 0.73 2.5E-05 39.6 5.4 28 267-294 53-80 (172)
160 2ce7_A Cell division protein F 87.5 0.83 2.8E-05 46.7 6.6 33 241-277 50-82 (476)
161 3bgw_A DNAB-like replicative h 87.4 1.3 4.6E-05 44.4 7.9 49 240-289 197-245 (444)
162 1q57_A DNA primase/helicase; d 87.4 2.6 8.8E-05 42.4 10.0 50 239-288 241-290 (503)
163 1fuk_A Eukaryotic initiation f 87.2 0.66 2.3E-05 39.3 4.8 28 267-294 52-79 (165)
164 2p6n_A ATP-dependent RNA helic 86.6 0.74 2.5E-05 40.5 5.0 28 267-294 76-103 (191)
165 3hr8_A Protein RECA; alpha and 86.3 1.4 4.8E-05 43.3 7.3 40 240-280 61-100 (356)
166 3cpe_A Terminase, DNA packagin 85.7 5.9 0.0002 40.9 11.9 66 225-292 163-229 (592)
167 2px0_A Flagellar biosynthesis 85.0 5.2 0.00018 37.9 10.2 40 240-279 105-144 (296)
168 3co5_A Putative two-component 84.9 0.55 1.9E-05 39.1 3.0 21 237-257 24-44 (143)
169 3n70_A Transport activator; si 84.8 0.62 2.1E-05 38.7 3.3 20 238-257 22-41 (145)
170 2o0j_A Terminase, DNA packagin 84.3 3.7 0.00013 40.8 9.3 66 225-292 163-229 (385)
171 3hu3_A Transitional endoplasmi 84.2 1 3.5E-05 45.9 5.3 33 240-276 238-270 (489)
172 1r6b_X CLPA protein; AAA+, N-t 83.8 1.4 4.9E-05 46.4 6.4 18 240-257 207-224 (758)
173 4b4t_H 26S protease regulatory 83.3 1.6 5.4E-05 44.9 6.2 71 200-277 204-276 (467)
174 1sxj_C Activator 1 40 kDa subu 83.2 3 0.0001 39.3 7.7 15 243-257 49-63 (340)
175 1uaa_A REP helicase, protein ( 83.1 0.73 2.5E-05 48.0 3.7 50 225-276 2-54 (673)
176 1e9r_A Conjugal transfer prote 82.3 0.98 3.4E-05 44.2 4.1 19 239-257 52-70 (437)
177 3cmu_A Protein RECA, recombina 82.2 4.3 0.00015 48.5 10.0 45 233-278 1414-1464(2050)
178 2v3c_C SRP54, signal recogniti 82.2 1.9 6.6E-05 43.3 6.3 36 242-278 101-136 (432)
179 4a74_A DNA repair and recombin 82.1 5.5 0.00019 34.3 8.5 19 239-257 24-42 (231)
180 1in4_A RUVB, holliday junction 82.0 3.2 0.00011 39.4 7.5 34 241-278 52-85 (334)
181 1v5w_A DMC1, meiotic recombina 81.8 4.6 0.00016 38.7 8.6 47 233-280 110-167 (343)
182 3cf2_A TER ATPase, transitiona 81.4 4.7 0.00016 44.0 9.3 33 241-277 239-271 (806)
183 1pjr_A PCRA; DNA repair, DNA r 81.2 1.4 4.7E-05 46.7 5.0 51 224-276 10-63 (724)
184 2r8r_A Sensor protein; KDPD, P 81.2 5.7 0.0002 37.0 8.7 39 239-278 4-43 (228)
185 2i1q_A DNA repair and recombin 81.1 3.2 0.00011 38.9 7.0 18 240-257 98-115 (322)
186 3i32_A Heat resistant RNA depe 80.9 1.5 5E-05 41.9 4.7 28 267-294 50-77 (300)
187 2bzb_A Conserved domain protei 80.9 1.8 6.1E-05 32.8 4.2 46 5-50 9-57 (62)
188 2jgn_A DBX, DDX3, ATP-dependen 80.9 0.87 3E-05 39.7 2.9 28 267-294 68-95 (185)
189 1sxj_E Activator 1 40 kDa subu 80.5 2.8 9.5E-05 39.1 6.4 16 242-257 38-53 (354)
190 1ls1_A Signal recognition part 80.2 7.2 0.00025 36.7 9.2 38 240-278 98-135 (295)
191 3hws_A ATP-dependent CLP prote 79.2 3.4 0.00012 39.3 6.6 34 239-276 50-83 (363)
192 1ypw_A Transitional endoplasmi 79.1 2.1 7.3E-05 46.2 5.7 34 239-276 237-270 (806)
193 4ag6_A VIRB4 ATPase, type IV s 79.0 2.7 9.3E-05 40.5 5.9 39 239-278 34-72 (392)
194 3io5_A Recombination and repai 78.8 3.2 0.00011 40.9 6.4 40 242-281 30-70 (333)
195 3cmw_A Protein RECA, recombina 78.3 3.2 0.00011 48.8 7.2 43 240-283 732-774 (1706)
196 2yjt_D ATP-dependent RNA helic 79.6 0.44 1.5E-05 40.7 0.0 45 250-294 29-79 (170)
197 2oap_1 GSPE-2, type II secreti 77.7 1.6 5.4E-05 44.9 4.0 32 226-257 245-277 (511)
198 1qvr_A CLPB protein; coiled co 77.6 1.4 4.8E-05 47.5 3.7 35 242-277 590-624 (854)
199 1lv7_A FTSH; alpha/beta domain 77.0 6.7 0.00023 35.1 7.6 34 240-277 45-78 (257)
200 3e70_C DPA, signal recognition 76.8 13 0.00046 35.7 10.1 18 240-257 129-146 (328)
201 2r44_A Uncharacterized protein 76.2 2.6 8.8E-05 39.3 4.7 40 233-276 39-78 (331)
202 2c0s_A Conserved domain protei 76.0 3.4 0.00011 31.5 4.4 34 5-38 9-45 (64)
203 2i4i_A ATP-dependent RNA helic 75.3 3.1 0.00011 39.3 5.1 28 267-294 298-325 (417)
204 2j9r_A Thymidine kinase; TK1, 74.9 6.6 0.00023 36.2 7.0 36 244-280 32-67 (214)
205 3pey_A ATP-dependent RNA helic 74.7 2.8 9.6E-05 38.9 4.5 43 252-294 244-292 (395)
206 3fht_A ATP-dependent RNA helic 74.5 2.8 9.6E-05 39.3 4.5 28 267-294 288-315 (412)
207 3b85_A Phosphate starvation-in 74.3 3 0.0001 37.5 4.5 31 227-257 9-39 (208)
208 1xti_A Probable ATP-dependent 74.3 3.5 0.00012 38.4 5.1 28 267-294 272-299 (391)
209 1p9r_A General secretion pathw 74.3 1.8 6.1E-05 43.4 3.2 31 227-257 152-184 (418)
210 3cmw_A Protein RECA, recombina 74.1 7.3 0.00025 45.9 8.6 78 205-283 329-425 (1706)
211 2qgz_A Helicase loader, putati 73.8 6.1 0.00021 37.3 6.7 37 240-276 152-188 (308)
212 3e2i_A Thymidine kinase; Zn-bi 73.5 9.9 0.00034 35.3 7.8 40 240-280 28-67 (219)
213 1s2m_A Putative ATP-dependent 73.4 3.7 0.00013 38.6 5.1 28 267-294 280-307 (400)
214 2d7d_A Uvrabc system protein B 73.4 8.8 0.0003 40.3 8.4 62 225-292 12-78 (661)
215 3u4q_A ATP-dependent helicase/ 73.2 2 6.8E-05 48.4 3.6 39 225-265 10-48 (1232)
216 2bjv_A PSP operon transcriptio 72.4 2.2 7.5E-05 38.5 3.1 19 239-257 28-46 (265)
217 1ofh_A ATP-dependent HSL prote 72.3 3.4 0.00012 37.4 4.4 33 240-276 50-82 (310)
218 2j0s_A ATP-dependent RNA helic 72.3 3.4 0.00011 39.1 4.5 28 267-294 298-325 (410)
219 3nwn_A Kinesin-like protein KI 72.1 2.2 7.4E-05 42.2 3.2 27 232-258 95-123 (359)
220 2ehv_A Hypothetical protein PH 71.9 8.4 0.00029 33.6 6.7 45 239-284 29-74 (251)
221 1bg2_A Kinesin; motor protein, 71.7 2.5 8.6E-05 41.1 3.5 27 232-258 68-96 (325)
222 1hv8_A Putative ATP-dependent 71.6 4.8 0.00016 36.9 5.3 28 267-294 260-287 (367)
223 2gza_A Type IV secretion syste 71.4 1.7 5.7E-05 42.3 2.2 21 237-257 172-192 (361)
224 2db3_A ATP-dependent RNA helic 71.3 4.3 0.00015 39.7 5.1 28 267-294 322-349 (434)
225 2kjq_A DNAA-related protein; s 71.2 5.5 0.00019 33.6 5.2 38 239-277 35-72 (149)
226 1g5t_A COB(I)alamin adenosyltr 70.9 16 0.00055 33.1 8.5 33 241-275 29-62 (196)
227 1zu4_A FTSY; GTPase, signal re 70.4 29 0.00099 33.1 10.7 38 242-280 107-144 (320)
228 3dc4_A Kinesin-like protein NO 70.3 2.6 8.8E-05 41.4 3.3 26 232-257 85-112 (344)
229 4a14_A Kinesin, kinesin-like p 70.0 2.9 9.8E-05 40.9 3.5 26 232-257 74-101 (344)
230 1kgd_A CASK, peripheral plasma 69.8 1.5 5.2E-05 37.6 1.4 20 238-257 3-22 (180)
231 3trf_A Shikimate kinase, SK; a 69.5 3.4 0.00012 34.8 3.5 18 240-257 5-22 (185)
232 2gno_A DNA polymerase III, gam 69.5 7.9 0.00027 36.8 6.4 16 242-257 20-35 (305)
233 2y65_A Kinesin, kinesin heavy 69.4 3 0.0001 41.3 3.5 27 232-258 75-103 (365)
234 2vvg_A Kinesin-2; motor protei 69.4 3 0.0001 41.0 3.5 27 232-258 80-108 (350)
235 1rj9_A FTSY, signal recognitio 69.3 26 0.0009 33.2 10.0 18 240-257 102-119 (304)
236 2h58_A Kinesin-like protein KI 69.1 3.1 0.00011 40.5 3.5 27 232-258 71-99 (330)
237 2zpa_A Uncharacterized protein 69.1 6.1 0.00021 42.3 6.1 33 225-257 175-209 (671)
238 1goj_A Kinesin, kinesin heavy 68.9 2.9 9.9E-05 41.2 3.3 27 232-258 71-99 (355)
239 2x8a_A Nuclear valosin-contain 68.7 1.9 6.6E-05 40.1 1.9 69 201-277 6-77 (274)
240 3lre_A Kinesin-like protein KI 68.6 2.9 0.0001 41.1 3.3 27 232-258 96-124 (355)
241 3nbx_X ATPase RAVA; AAA+ ATPas 68.6 2.5 8.5E-05 43.4 2.8 29 229-257 30-58 (500)
242 2pt7_A CAG-ALFA; ATPase, prote 68.5 1.9 6.5E-05 41.4 1.9 20 238-257 169-188 (330)
243 4fcw_A Chaperone protein CLPB; 68.3 2.4 8.3E-05 38.7 2.5 18 241-258 48-65 (311)
244 2nr8_A Kinesin-like protein KI 68.3 3 0.0001 41.2 3.2 27 232-258 94-122 (358)
245 1d2n_A N-ethylmaleimide-sensit 68.3 4.4 0.00015 36.7 4.2 32 241-276 65-96 (272)
246 3b6u_A Kinesin-like protein KI 68.3 3 0.0001 41.5 3.2 27 232-258 92-120 (372)
247 2zfi_A Kinesin-like protein KI 68.1 3.3 0.00011 40.9 3.5 28 231-258 79-108 (366)
248 4etp_A Kinesin-like protein KA 67.8 3.7 0.00013 41.1 3.9 27 232-258 131-159 (403)
249 1t5c_A CENP-E protein, centrom 67.6 3.1 0.00011 40.8 3.2 27 232-258 68-96 (349)
250 1lvg_A Guanylate kinase, GMP k 66.7 2.2 7.6E-05 37.4 1.8 19 239-257 3-21 (198)
251 2eyu_A Twitching motility prot 66.2 1.8 6.2E-05 40.2 1.1 21 237-257 22-42 (261)
252 3cmu_A Protein RECA, recombina 66.1 8.5 0.00029 46.1 6.9 51 232-283 369-425 (2050)
253 3u06_A Protein claret segregat 66.1 3.8 0.00013 41.2 3.5 27 232-258 129-157 (412)
254 1v8k_A Kinesin-like protein KI 65.8 3.5 0.00012 41.6 3.2 27 232-258 145-173 (410)
255 3gbj_A KIF13B protein; kinesin 65.8 3.3 0.00011 40.7 3.0 28 231-258 82-111 (354)
256 1ojl_A Transcriptional regulat 65.7 4.5 0.00015 38.0 3.8 37 239-276 24-60 (304)
257 2wbe_C Bipolar kinesin KRP-130 65.6 3.4 0.00012 41.0 3.0 28 231-258 90-119 (373)
258 3lda_A DNA repair protein RAD5 65.6 18 0.00062 35.8 8.4 25 233-257 166-195 (400)
259 2owm_A Nckin3-434, related to 65.4 3.7 0.00013 41.7 3.3 27 232-258 127-155 (443)
260 1sky_E F1-ATPase, F1-ATP synth 65.4 22 0.00075 36.5 9.1 59 233-292 141-203 (473)
261 1x88_A Kinesin-like protein KI 65.3 3 0.0001 41.0 2.6 28 231-258 78-107 (359)
262 2heh_A KIF2C protein; kinesin, 65.2 3.6 0.00012 41.2 3.1 27 232-258 125-153 (387)
263 4b4t_M 26S protease regulatory 65.0 4.3 0.00015 41.1 3.7 71 199-276 175-247 (434)
264 1wp9_A ATP-dependent RNA helic 64.9 4.1 0.00014 38.3 3.3 28 267-294 383-418 (494)
265 1ry6_A Internal kinesin; kines 64.8 3.8 0.00013 40.5 3.2 25 234-258 76-103 (360)
266 1cr0_A DNA primase/helicase; R 64.7 15 0.00051 33.6 7.1 44 239-283 34-78 (296)
267 3i5x_A ATP-dependent RNA helic 64.4 6.5 0.00022 39.3 4.9 26 269-294 366-391 (563)
268 1sxj_A Activator 1 95 kDa subu 64.4 8.5 0.00029 38.8 5.8 34 241-278 78-111 (516)
269 3sr0_A Adenylate kinase; phosp 64.0 4.6 0.00016 36.2 3.4 27 243-273 3-29 (206)
270 2orv_A Thymidine kinase; TP4A 64.0 7 0.00024 36.6 4.7 39 240-279 19-57 (234)
271 3cob_A Kinesin heavy chain-lik 63.8 3.2 0.00011 41.2 2.5 26 233-258 71-98 (369)
272 3vkw_A Replicase large subunit 63.8 5.5 0.00019 40.6 4.3 16 243-258 164-179 (446)
273 3t0q_A AGR253WP; kinesin, alph 63.6 3.4 0.00012 40.5 2.6 27 232-258 76-104 (349)
274 4b4t_L 26S protease subunit RP 63.5 4.7 0.00016 40.8 3.7 71 200-277 176-248 (437)
275 3bfn_A Kinesin-like protein KI 63.4 3.6 0.00012 41.1 2.8 25 234-258 91-117 (388)
276 1g41_A Heat shock protein HSLU 63.1 7.4 0.00025 39.5 5.1 33 240-276 50-82 (444)
277 3umf_A Adenylate kinase; rossm 63.0 4.9 0.00017 36.6 3.4 28 241-272 30-57 (217)
278 4b4t_K 26S protease regulatory 62.9 4.9 0.00017 40.5 3.7 71 200-277 167-239 (428)
279 3a8t_A Adenylate isopentenyltr 62.8 2.5 8.7E-05 41.5 1.5 18 241-258 41-58 (339)
280 1f9v_A Kinesin-like protein KA 62.8 3.5 0.00012 40.4 2.5 27 232-258 75-103 (347)
281 3foz_A TRNA delta(2)-isopenten 62.8 4.6 0.00016 39.4 3.3 16 243-258 13-28 (316)
282 2c9o_A RUVB-like 1; hexameric 62.6 5.7 0.00019 39.4 4.1 34 240-277 63-98 (456)
283 2p5t_B PEZT; postsegregational 62.4 8.2 0.00028 34.9 4.8 34 241-278 33-66 (253)
284 2rep_A Kinesin-like protein KI 62.3 3.3 0.00011 41.2 2.3 26 233-258 107-134 (376)
285 1oyw_A RECQ helicase, ATP-depe 61.9 8.2 0.00028 39.1 5.2 28 267-294 258-285 (523)
286 3cf2_A TER ATPase, transitiona 61.6 10 0.00035 41.3 6.1 32 240-275 511-542 (806)
287 3lw7_A Adenylate kinase relate 61.5 2.9 0.0001 34.0 1.5 27 243-274 4-30 (179)
288 2oca_A DAR protein, ATP-depend 61.4 8.3 0.00029 38.0 5.0 28 267-294 369-396 (510)
289 2r62_A Cell division protease 61.1 2.7 9.4E-05 37.7 1.3 18 240-257 44-61 (268)
290 3jvv_A Twitching mobility prot 60.9 2.8 9.7E-05 40.9 1.5 19 239-257 122-140 (356)
291 3tau_A Guanylate kinase, GMP k 60.8 3.1 0.00011 36.5 1.6 19 239-257 7-25 (208)
292 1qhx_A CPT, protein (chloramph 60.7 8.1 0.00028 32.1 4.2 18 240-257 3-20 (178)
293 2v1x_A ATP-dependent DNA helic 60.6 8.5 0.00029 39.9 5.1 28 267-294 289-316 (591)
294 2j41_A Guanylate kinase; GMP, 60.4 3 0.0001 35.6 1.4 20 238-257 4-23 (207)
295 3sqw_A ATP-dependent RNA helic 60.1 8.6 0.00029 39.0 4.9 26 269-294 315-340 (579)
296 3eiq_A Eukaryotic initiation f 60.0 3.4 0.00012 38.9 1.8 28 267-294 302-329 (414)
297 2ewv_A Twitching motility prot 59.8 2.7 9.1E-05 41.1 1.1 20 238-257 134-153 (372)
298 2ze6_A Isopentenyl transferase 59.7 3.2 0.00011 38.0 1.5 15 243-257 4-18 (253)
299 1tev_A UMP-CMP kinase; ploop, 59.4 5.6 0.00019 33.2 2.9 18 240-257 3-20 (196)
300 3kb2_A SPBC2 prophage-derived 59.3 7 0.00024 32.0 3.5 27 242-272 3-29 (173)
301 3vaa_A Shikimate kinase, SK; s 59.2 3.5 0.00012 35.7 1.6 19 239-257 24-42 (199)
302 1g8p_A Magnesium-chelatase 38 59.0 5.6 0.00019 36.8 3.1 18 240-257 45-62 (350)
303 1u0j_A DNA replication protein 58.9 6.9 0.00024 37.2 3.7 37 219-258 80-122 (267)
304 2z0m_A 337AA long hypothetical 58.7 11 0.00038 34.1 5.0 44 250-294 219-265 (337)
305 3tr0_A Guanylate kinase, GMP k 58.3 3.7 0.00013 35.0 1.6 19 239-257 6-24 (205)
306 3fb4_A Adenylate kinase; psych 57.4 7.9 0.00027 33.4 3.6 27 243-273 3-29 (216)
307 2yhs_A FTSY, cell division pro 57.4 37 0.0013 35.1 9.1 37 242-279 295-331 (503)
308 3dl0_A Adenylate kinase; phosp 57.2 8.6 0.00029 33.3 3.8 27 243-273 3-29 (216)
309 3cm0_A Adenylate kinase; ATP-b 56.8 5.5 0.00019 33.4 2.4 19 239-257 3-21 (186)
310 3exa_A TRNA delta(2)-isopenten 56.6 4.4 0.00015 39.7 2.0 17 242-258 5-21 (322)
311 3piu_A 1-aminocyclopropane-1-c 56.6 49 0.0017 31.4 9.4 10 371-380 225-234 (435)
312 3crm_A TRNA delta(2)-isopenten 56.5 7.6 0.00026 37.8 3.7 28 242-273 7-34 (323)
313 1zd8_A GTP:AMP phosphotransfer 56.5 7.4 0.00025 34.3 3.3 29 240-272 7-35 (227)
314 1z6g_A Guanylate kinase; struc 56.2 4.8 0.00016 35.8 2.0 20 238-257 21-40 (218)
315 1kag_A SKI, shikimate kinase I 56.1 4.8 0.00016 33.4 1.9 18 240-257 4-21 (173)
316 2qor_A Guanylate kinase; phosp 56.0 4.8 0.00016 34.9 2.0 20 238-257 10-29 (204)
317 3ney_A 55 kDa erythrocyte memb 55.5 4 0.00014 36.8 1.4 20 238-257 17-36 (197)
318 1xx6_A Thymidine kinase; NESG, 55.5 13 0.00045 33.0 4.8 38 240-278 8-45 (191)
319 1xjc_A MOBB protein homolog; s 55.4 15 0.00052 32.2 5.1 35 243-278 7-41 (169)
320 1kht_A Adenylate kinase; phosp 55.4 4.3 0.00015 33.9 1.5 19 239-257 2-20 (192)
321 2z0h_A DTMP kinase, thymidylat 55.1 11 0.00037 31.7 4.0 32 243-275 3-34 (197)
322 4b4t_I 26S protease regulatory 55.0 8.6 0.00029 39.2 3.9 72 199-277 176-249 (437)
323 3a00_A Guanylate kinase, GMP k 54.6 5.3 0.00018 34.2 2.0 17 241-257 2-18 (186)
324 3iij_A Coilin-interacting nucl 54.5 5.4 0.00019 33.5 2.0 20 238-257 9-28 (180)
325 1aky_A Adenylate kinase; ATP:A 54.5 8.7 0.0003 33.5 3.4 28 240-271 4-31 (220)
326 1ak2_A Adenylate kinase isoenz 54.4 8.8 0.0003 34.0 3.5 29 240-272 16-44 (233)
327 1f2t_A RAD50 ABC-ATPase; DNA d 54.4 5.2 0.00018 33.7 1.9 15 243-257 26-40 (149)
328 1ixz_A ATP-dependent metallopr 54.1 5.1 0.00017 35.8 1.9 17 241-257 50-66 (254)
329 1zp6_A Hypothetical protein AT 54.1 3.5 0.00012 34.8 0.8 19 239-257 8-26 (191)
330 1m7g_A Adenylylsulfate kinase; 53.9 12 0.00041 32.5 4.2 49 227-276 13-61 (211)
331 2cdn_A Adenylate kinase; phosp 53.8 9.8 0.00033 32.6 3.6 29 241-273 21-49 (201)
332 4h1g_A Maltose binding protein 53.8 7.9 0.00027 41.0 3.5 27 232-258 453-481 (715)
333 2v54_A DTMP kinase, thymidylat 53.8 11 0.00036 32.1 3.8 34 239-276 3-37 (204)
334 1zuh_A Shikimate kinase; alpha 53.7 9.9 0.00034 31.5 3.5 28 241-272 8-35 (168)
335 1e6c_A Shikimate kinase; phosp 53.4 9.7 0.00033 31.4 3.4 27 241-271 3-29 (173)
336 4gp7_A Metallophosphoesterase; 53.2 4.8 0.00016 34.2 1.5 18 240-257 9-26 (171)
337 2c95_A Adenylate kinase 1; tra 53.0 9 0.00031 32.2 3.2 29 239-271 8-36 (196)
338 3kta_A Chromosome segregation 52.9 5.1 0.00017 33.7 1.6 16 242-257 28-43 (182)
339 2iyv_A Shikimate kinase, SK; t 52.9 12 0.0004 31.5 3.9 17 241-257 3-19 (184)
340 1e4v_A Adenylate kinase; trans 52.7 9.4 0.00032 33.2 3.3 27 243-273 3-29 (214)
341 4dzz_A Plasmid partitioning pr 52.4 41 0.0014 28.3 7.3 32 247-279 9-40 (206)
342 2qmh_A HPR kinase/phosphorylas 52.4 4.5 0.00015 37.3 1.2 19 239-257 33-51 (205)
343 3be4_A Adenylate kinase; malar 52.3 9.2 0.00031 33.5 3.2 30 240-273 5-34 (217)
344 1ly1_A Polynucleotide kinase; 52.2 5.2 0.00018 33.1 1.5 15 243-257 5-19 (181)
345 2pt5_A Shikimate kinase, SK; a 52.0 11 0.00039 30.9 3.6 27 242-272 2-28 (168)
346 3auy_A DNA double-strand break 51.9 5.1 0.00017 38.7 1.6 15 243-257 28-42 (371)
347 2bwj_A Adenylate kinase 5; pho 51.6 9.4 0.00032 32.2 3.1 19 239-257 11-29 (199)
348 1qf9_A UMP/CMP kinase, protein 51.5 9.7 0.00033 31.7 3.1 16 242-257 8-23 (194)
349 1ukz_A Uridylate kinase; trans 51.4 11 0.00039 32.1 3.6 16 242-257 17-32 (203)
350 4gl2_A Interferon-induced heli 51.3 4.6 0.00016 41.5 1.2 26 269-294 430-463 (699)
351 3qf7_A RAD50; ABC-ATPase, ATPa 50.9 5.9 0.0002 38.4 1.9 16 242-257 25-40 (365)
352 1nks_A Adenylate kinase; therm 50.9 15 0.00053 30.4 4.3 33 243-276 4-36 (194)
353 3lnc_A Guanylate kinase, GMP k 50.7 5.6 0.00019 35.1 1.5 19 239-257 26-44 (231)
354 2rhm_A Putative kinase; P-loop 50.5 11 0.00038 31.6 3.3 18 240-257 5-22 (193)
355 1y63_A LMAJ004144AAA protein; 50.3 6.3 0.00022 33.7 1.8 19 239-257 9-27 (184)
356 1ex7_A Guanylate kinase; subst 50.2 6.2 0.00021 35.1 1.8 17 241-257 2-18 (186)
357 3d3q_A TRNA delta(2)-isopenten 50.2 5.5 0.00019 39.1 1.5 16 242-257 9-24 (340)
358 2yvu_A Probable adenylyl-sulfa 49.5 15 0.00051 31.0 4.0 36 240-276 13-48 (186)
359 2xb4_A Adenylate kinase; ATP-b 49.2 11 0.00039 33.2 3.3 26 243-272 3-28 (223)
360 2vli_A Antibiotic resistance p 49.2 13 0.00044 30.9 3.5 31 239-273 4-34 (183)
361 3pxg_A Negative regulator of g 49.2 12 0.00041 37.4 3.9 19 240-258 201-219 (468)
362 2d7d_A Uvrabc system protein B 49.0 17 0.00059 38.1 5.2 51 239-294 444-494 (661)
363 2pez_A Bifunctional 3'-phospho 48.8 15 0.00052 30.8 4.0 37 239-276 4-40 (179)
364 3f9v_A Minichromosome maintena 48.6 6.2 0.00021 41.0 1.7 17 242-258 329-345 (595)
365 4eun_A Thermoresistant glucoki 48.6 6.5 0.00022 34.0 1.6 19 239-257 28-46 (200)
366 1tf7_A KAIC; homohexamer, hexa 48.6 46 0.0016 33.5 8.1 43 239-282 280-322 (525)
367 1iy2_A ATP-dependent metallopr 48.5 7 0.00024 35.6 1.9 17 241-257 74-90 (278)
368 2qen_A Walker-type ATPase; unk 48.5 11 0.00037 34.4 3.2 31 227-257 17-48 (350)
369 3nwj_A ATSK2; P loop, shikimat 47.9 9.3 0.00032 35.3 2.6 21 237-257 45-65 (250)
370 3tlx_A Adenylate kinase 2; str 47.6 12 0.00042 33.6 3.4 29 240-272 29-57 (243)
371 4akg_A Glutathione S-transfera 47.6 10 0.00034 46.6 3.5 20 238-257 1265-1284(2695)
372 1c4o_A DNA nucleotide excision 47.6 19 0.00064 37.9 5.2 51 239-294 438-488 (664)
373 3a4m_A L-seryl-tRNA(SEC) kinas 47.6 20 0.00069 32.5 4.8 36 241-277 5-40 (260)
374 2ius_A DNA translocase FTSK; n 47.4 7.3 0.00025 40.2 2.0 20 239-258 166-185 (512)
375 1znw_A Guanylate kinase, GMP k 47.3 8 0.00028 33.6 2.0 22 236-257 16-37 (207)
376 3k1j_A LON protease, ATP-depen 46.6 13 0.00044 38.4 3.7 23 235-257 55-77 (604)
377 3eph_A TRNA isopentenyltransfe 46.5 10 0.00034 38.3 2.8 16 243-258 5-20 (409)
378 3c8u_A Fructokinase; YP_612366 46.1 6.7 0.00023 34.2 1.3 18 240-257 22-39 (208)
379 3vkg_A Dynein heavy chain, cyt 46.1 15 0.00053 45.8 4.8 44 221-265 884-931 (3245)
380 1via_A Shikimate kinase; struc 45.9 15 0.00051 30.7 3.4 17 241-257 5-21 (175)
381 1knq_A Gluconate kinase; ALFA/ 45.1 7.5 0.00026 32.4 1.4 18 240-257 8-25 (175)
382 1z5z_A Helicase of the SNF2/RA 44.9 27 0.00093 32.3 5.4 27 268-294 136-162 (271)
383 2fna_A Conserved hypothetical 44.4 12 0.00041 34.1 2.8 30 227-257 18-47 (357)
384 2bdt_A BH3686; alpha-beta prot 44.2 9.4 0.00032 32.3 1.9 16 242-257 4-19 (189)
385 3pxi_A Negative regulator of g 44.1 15 0.00052 38.7 3.9 19 240-258 201-219 (758)
386 3vkg_A Dynein heavy chain, cyt 43.8 11 0.00037 47.1 3.0 20 238-257 1302-1321(3245)
387 4akg_A Glutathione S-transfera 43.4 25 0.00085 43.3 5.9 21 238-258 921-941 (2695)
388 1np6_A Molybdopterin-guanine d 43.4 27 0.00094 30.3 4.8 33 243-276 9-41 (174)
389 1cke_A CK, MSSA, protein (cyti 43.4 8.5 0.00029 33.4 1.5 17 241-257 6-22 (227)
390 3asz_A Uridine kinase; cytidin 43.3 7.8 0.00027 33.4 1.2 18 240-257 6-23 (211)
391 3uie_A Adenylyl-sulfate kinase 43.0 21 0.00072 30.6 4.0 50 225-276 11-60 (200)
392 1rz3_A Hypothetical protein rb 42.7 24 0.00083 30.4 4.4 33 242-275 24-56 (201)
393 3t61_A Gluconokinase; PSI-biol 42.7 8.9 0.0003 32.9 1.5 17 241-257 19-35 (202)
394 1s96_A Guanylate kinase, GMP k 42.6 9 0.00031 34.5 1.6 20 238-257 14-33 (219)
395 3fmp_B ATP-dependent RNA helic 42.4 5.3 0.00018 39.1 0.0 44 251-294 333-382 (479)
396 3dmq_A RNA polymerase-associat 42.3 15 0.00051 40.4 3.5 32 263-294 522-553 (968)
397 3qks_A DNA double-strand break 42.1 10 0.00035 33.4 1.9 16 242-257 25-40 (203)
398 1fuu_A Yeast initiation factor 41.9 5.4 0.00019 37.1 0.0 44 250-294 258-308 (394)
399 1ye8_A Protein THEP1, hypothet 41.8 9.3 0.00032 33.2 1.5 16 242-257 2-17 (178)
400 1nlf_A Regulatory protein REPA 41.7 56 0.0019 29.5 6.9 46 237-283 27-82 (279)
401 2h17_A ADP-ribosylation factor 41.4 6.6 0.00023 32.7 0.5 32 226-257 7-38 (181)
402 3pxi_A Negative regulator of g 41.4 36 0.0012 35.8 6.2 17 242-258 523-539 (758)
403 3ice_A Transcription terminati 41.2 50 0.0017 33.5 6.9 31 228-258 159-192 (422)
404 3zvl_A Bifunctional polynucleo 41.0 67 0.0023 31.5 7.7 17 242-258 260-276 (416)
405 2ck3_A ATP synthase subunit al 40.9 68 0.0023 33.2 8.0 60 232-292 151-221 (510)
406 3qkt_A DNA double-strand break 40.9 11 0.00036 35.9 1.9 15 243-257 26-40 (339)
407 1nn5_A Similar to deoxythymidy 40.4 30 0.001 29.3 4.6 37 239-276 8-44 (215)
408 3tif_A Uncharacterized ABC tra 39.9 11 0.00036 34.3 1.6 19 239-257 30-48 (235)
409 3o1i_D Periplasmic protein TOR 39.3 43 0.0015 29.6 5.6 32 261-292 27-60 (304)
410 3ake_A Cytidylate kinase; CMP 39.1 22 0.00075 30.1 3.4 15 243-257 5-19 (208)
411 2pbr_A DTMP kinase, thymidylat 39.0 35 0.0012 28.3 4.7 32 243-275 3-34 (195)
412 1gvn_B Zeta; postsegregational 39.0 11 0.00038 35.1 1.7 17 241-257 34-50 (287)
413 2jaq_A Deoxyguanosine kinase; 38.8 11 0.00038 31.7 1.5 25 243-271 3-27 (205)
414 2bbw_A Adenylate kinase 4, AK4 38.7 11 0.00037 33.6 1.5 19 239-257 26-44 (246)
415 2dhr_A FTSH; AAA+ protein, hex 38.7 24 0.00083 36.1 4.2 33 241-277 65-97 (499)
416 3m6a_A ATP-dependent protease 38.4 12 0.00042 38.2 2.0 19 239-257 107-125 (543)
417 2dyk_A GTP-binding protein; GT 38.0 12 0.00041 29.8 1.5 16 242-257 3-18 (161)
418 3b9q_A Chloroplast SRP recepto 37.9 56 0.0019 30.8 6.4 19 240-258 100-118 (302)
419 2qt1_A Nicotinamide riboside k 37.5 11 0.00037 32.5 1.2 18 240-257 21-38 (207)
420 2qe7_A ATP synthase subunit al 37.2 58 0.002 33.7 6.8 59 232-292 151-213 (502)
421 2cbz_A Multidrug resistance-as 37.2 12 0.00042 33.9 1.6 19 239-257 30-48 (237)
422 2v9p_A Replication protein E1; 37.0 12 0.00041 35.9 1.6 19 239-257 125-143 (305)
423 1zak_A Adenylate kinase; ATP:A 36.8 13 0.00045 32.4 1.7 18 240-257 5-22 (222)
424 2grj_A Dephospho-COA kinase; T 36.7 23 0.00077 31.2 3.2 15 243-257 15-29 (192)
425 2plr_A DTMP kinase, probable t 36.6 10 0.00034 32.2 0.9 19 239-257 3-21 (213)
426 2ce2_X GTPase HRAS; signaling 36.5 12 0.00041 29.6 1.2 16 242-257 5-20 (166)
427 1e69_A Chromosome segregation 36.4 15 0.0005 34.6 2.1 16 242-257 26-41 (322)
428 1z2a_A RAS-related protein RAB 36.1 13 0.00046 29.7 1.5 16 242-257 7-22 (168)
429 2ged_A SR-beta, signal recogni 36.0 13 0.00045 30.9 1.5 17 241-257 49-65 (193)
430 2r9v_A ATP synthase subunit al 35.7 53 0.0018 34.1 6.2 59 232-292 164-226 (515)
431 2h92_A Cytidylate kinase; ross 35.6 30 0.001 29.7 3.8 18 240-257 3-20 (219)
432 2if2_A Dephospho-COA kinase; a 35.6 12 0.00041 31.9 1.2 16 242-257 3-18 (204)
433 2i3b_A HCR-ntpase, human cance 35.6 17 0.00059 31.9 2.2 19 240-258 1-19 (189)
434 1pui_A ENGB, probable GTP-bind 35.2 11 0.00036 32.1 0.8 19 239-257 25-43 (210)
435 3bs4_A Uncharacterized protein 35.2 47 0.0016 31.1 5.3 50 239-289 20-69 (260)
436 1r6b_X CLPA protein; AAA+, N-t 35.1 21 0.00071 37.5 3.1 16 242-257 490-505 (758)
437 2wwf_A Thymidilate kinase, put 35.0 40 0.0014 28.5 4.5 36 239-275 9-44 (212)
438 3la6_A Tyrosine-protein kinase 34.9 47 0.0016 30.9 5.3 33 247-280 100-132 (286)
439 2ghi_A Transport protein; mult 34.7 14 0.00048 34.0 1.6 19 239-257 45-63 (260)
440 2f1r_A Molybdopterin-guanine d 34.7 20 0.0007 31.0 2.5 29 243-272 5-33 (171)
441 1jjv_A Dephospho-COA kinase; P 34.7 14 0.00048 31.6 1.5 15 243-257 5-19 (206)
442 3oaa_A ATP synthase subunit al 34.6 78 0.0027 32.9 7.3 59 232-292 151-213 (513)
443 2pze_A Cystic fibrosis transme 34.5 14 0.00049 33.2 1.6 19 239-257 33-51 (229)
444 1ky3_A GTP-binding protein YPT 34.5 15 0.0005 29.9 1.5 16 242-257 10-25 (182)
445 1a7j_A Phosphoribulokinase; tr 34.4 32 0.0011 32.1 4.1 34 243-278 8-42 (290)
446 1z0j_A RAB-22, RAS-related pro 34.4 15 0.0005 29.5 1.5 16 242-257 8-23 (170)
447 2k1h_A Uncharacterized protein 34.4 17 0.0006 29.4 1.9 24 42-78 57-80 (94)
448 4hvk_A Probable cysteine desul 34.2 1.6E+02 0.0056 26.4 8.7 10 369-380 168-177 (382)
449 1z3i_X Similar to RAD54-like; 34.1 56 0.0019 33.9 6.2 44 251-294 416-465 (644)
450 1uf9_A TT1252 protein; P-loop, 34.0 13 0.00045 31.3 1.2 16 242-257 10-25 (203)
451 1sgw_A Putative ABC transporte 33.9 17 0.00058 32.7 2.0 19 239-257 34-52 (214)
452 2ff7_A Alpha-hemolysin translo 33.7 15 0.00052 33.6 1.6 19 239-257 34-52 (247)
453 1ek0_A Protein (GTP-binding pr 33.7 16 0.00053 29.2 1.5 16 242-257 5-20 (170)
454 1kao_A RAP2A; GTP-binding prot 33.6 16 0.00053 29.0 1.5 16 242-257 5-20 (167)
455 1mv5_A LMRA, multidrug resista 33.4 13 0.00044 33.8 1.1 19 239-257 27-45 (243)
456 1g6h_A High-affinity branched- 33.4 15 0.00052 33.6 1.6 19 239-257 32-50 (257)
457 1g16_A RAS-related protein SEC 33.1 14 0.00049 29.5 1.2 16 242-257 5-20 (170)
458 2iut_A DNA translocase FTSK; n 33.1 16 0.00054 38.4 1.8 39 240-278 214-255 (574)
459 1u8z_A RAS-related protein RAL 32.9 16 0.00056 28.9 1.5 16 242-257 6-21 (168)
460 1pqx_A Conserved hypothetical 32.5 17 0.00059 29.3 1.6 24 42-78 57-80 (91)
461 1q3t_A Cytidylate kinase; nucl 32.5 31 0.001 30.5 3.4 19 239-257 15-33 (236)
462 2erx_A GTP-binding protein DI- 32.3 17 0.00057 29.1 1.5 16 242-257 5-20 (172)
463 2pcj_A ABC transporter, lipopr 32.1 15 0.00051 33.0 1.3 19 239-257 29-47 (224)
464 1tue_A Replication protein E1; 32.1 24 0.00081 32.6 2.6 33 225-258 40-76 (212)
465 1ji0_A ABC transporter; ATP bi 31.8 17 0.00058 33.0 1.6 19 239-257 31-49 (240)
466 4e22_A Cytidylate kinase; P-lo 31.6 19 0.00065 32.6 1.9 19 239-257 26-44 (252)
467 3pqc_A Probable GTP-binding pr 31.6 15 0.00052 30.2 1.2 17 241-257 24-40 (195)
468 3gfo_A Cobalt import ATP-bindi 31.5 17 0.00057 34.1 1.5 19 239-257 33-51 (275)
469 2f9l_A RAB11B, member RAS onco 31.3 18 0.0006 30.7 1.5 16 242-257 7-22 (199)
470 1wms_A RAB-9, RAB9, RAS-relate 31.2 18 0.00061 29.3 1.5 16 242-257 9-24 (177)
471 4g1u_C Hemin import ATP-bindin 31.2 17 0.00059 33.7 1.6 19 239-257 36-54 (266)
472 3nh6_A ATP-binding cassette SU 31.1 12 0.0004 35.9 0.4 19 239-257 79-97 (306)
473 2e7u_A Glutamate-1-semialdehyd 30.9 37 0.0013 32.3 3.9 39 320-380 199-242 (424)
474 3dr5_A Putative O-methyltransf 30.8 1.9E+02 0.0065 25.4 8.4 38 221-258 32-74 (221)
475 3sop_A Neuronal-specific septi 30.8 16 0.00054 34.0 1.2 16 242-257 4-19 (270)
476 1svi_A GTP-binding protein YSX 30.7 16 0.00055 30.3 1.2 17 241-257 24-40 (195)
477 1c1y_A RAS-related protein RAP 30.6 19 0.00064 28.7 1.5 16 242-257 5-20 (167)
478 1b0u_A Histidine permease; ABC 30.4 18 0.00062 33.3 1.6 19 239-257 31-49 (262)
479 2d2e_A SUFC protein; ABC-ATPas 30.4 19 0.00063 32.9 1.6 19 239-257 28-46 (250)
480 1sff_A 4-aminobutyrate aminotr 30.3 37 0.0013 31.9 3.8 40 320-380 199-243 (426)
481 2yz2_A Putative ABC transporte 30.2 19 0.00064 33.3 1.6 19 239-257 32-50 (266)
482 3fdb_A Beta C-S lyase, putativ 30.2 2.7E+02 0.0091 25.2 9.6 10 371-380 184-193 (377)
483 2qi9_C Vitamin B12 import ATP- 30.1 19 0.00064 33.2 1.6 19 239-257 25-43 (249)
484 2nq2_C Hypothetical ABC transp 30.1 19 0.00064 33.1 1.6 19 239-257 30-48 (253)
485 1r2q_A RAS-related protein RAB 30.1 19 0.00066 28.7 1.5 16 242-257 8-23 (170)
486 2zu0_C Probable ATP-dependent 30.1 19 0.00064 33.3 1.6 19 239-257 45-63 (267)
487 2og2_A Putative signal recogni 30.0 82 0.0028 30.7 6.3 19 240-258 157-175 (359)
488 2ixe_A Antigen peptide transpo 29.9 19 0.00065 33.4 1.6 19 239-257 44-62 (271)
489 1z08_A RAS-related protein RAB 29.8 19 0.00066 28.8 1.5 16 242-257 8-23 (170)
490 1vpl_A ABC transporter, ATP-bi 29.5 19 0.00066 33.2 1.6 19 239-257 40-58 (256)
491 3tw8_B RAS-related protein RAB 29.5 20 0.00067 29.0 1.5 16 242-257 11-26 (181)
492 3dxv_A Alpha-amino-epsilon-cap 29.5 70 0.0024 30.4 5.6 40 320-380 201-245 (439)
493 2cy8_A D-phgat, D-phenylglycin 29.5 42 0.0014 32.2 4.1 40 320-380 201-245 (453)
494 2yv5_A YJEQ protein; hydrolase 29.4 28 0.00097 32.6 2.7 29 229-257 154-182 (302)
495 2onk_A Molybdate/tungstate ABC 29.3 19 0.00065 32.8 1.5 15 243-257 27-41 (240)
496 1nrj_B SR-beta, signal recogni 29.3 22 0.00077 30.2 1.9 17 241-257 13-29 (218)
497 1odf_A YGR205W, hypothetical 3 29.2 19 0.00065 33.9 1.5 15 243-257 34-48 (290)
498 1c9k_A COBU, adenosylcobinamid 29.1 18 0.00061 32.2 1.2 30 243-277 2-31 (180)
499 3q85_A GTP-binding protein REM 29.0 21 0.00071 28.7 1.5 16 242-257 4-19 (169)
500 1gtv_A TMK, thymidylate kinase 28.8 16 0.00056 31.1 0.9 15 243-257 3-17 (214)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.85 E-value=1.3e-21 Score=204.27 Aligned_cols=126 Identities=36% Similarity=0.624 Sum_probs=105.8
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH---------------------HHHHHHHhhcCC
Q 042872 212 DMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------DQIITLNLKFGI 270 (381)
Q Consensus 212 ~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~---------------------dQv~~L~~~~gI 270 (381)
.+...+.+.|||..|||+|.++|++++.|+|+|++||||+|||+||+ +|+..|. .+|+
T Consensus 31 ~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~-~~gi 109 (591)
T 2v1x_A 31 KVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLK-QLGI 109 (591)
T ss_dssp HHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHH-HHTC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHH-hcCC
Confidence 35566777799999999999999999999999999999999999998 6778887 5799
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCc
Q 042872 271 PATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSI 350 (381)
Q Consensus 271 ~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~ 350 (381)
++..++|+.+..++..++..+. ...+.++|||+|||+|..+..|...+......+
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~l~-----------------------~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~-- 164 (591)
T 2v1x_A 110 SATMLNASSSKEHVKWVHAEMV-----------------------NKNSELKLIYVTPEKIAKSKMFMSRLEKAYEAR-- 164 (591)
T ss_dssp CEEECCSSCCHHHHHHHHHHHH-----------------------CTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTT--
T ss_pred cEEEEeCCCCHHHHHHHHHHhh-----------------------cccCCCCEEEEChhHhhccHHHHHHHHhhhhcc--
Confidence 9999999999888877777763 223478999999999986567777766554333
Q ss_pred cccccccccccccccccCCccEEEEeccccC
Q 042872 351 RLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 351 ~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++.+|||||||||
T Consensus 165 ------------------~i~~iViDEAH~i 177 (591)
T 2v1x_A 165 ------------------RFTRIAVDEVHCC 177 (591)
T ss_dssp ------------------CEEEEEEETGGGG
T ss_pred ------------------CCcEEEEECcccc
Confidence 8999999999996
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.84 E-value=1.9e-21 Score=199.29 Aligned_cols=127 Identities=40% Similarity=0.635 Sum_probs=105.5
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH---------------------HHHH
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------DQII 262 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~---------------------dQv~ 262 (381)
|+.+..-+++...+.+.|||..|||+|.++|+++++|+|+|++||||+|||+||+ +|+.
T Consensus 4 fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~ 83 (523)
T 1oyw_A 4 AEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVD 83 (523)
T ss_dssp CCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHH
T ss_pred hhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHH
Confidence 3444445557777878899999999999999999999999999999999999998 6788
Q ss_pred HHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHH
Q 042872 263 TLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLK 342 (381)
Q Consensus 263 ~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~ 342 (381)
.+. .+|+++..++++.+..++...+..+..| .++|+|+|||+|. +..|...+.
T Consensus 84 ~l~-~~gi~~~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~ilv~Tpe~l~-~~~~~~~l~ 136 (523)
T 1oyw_A 84 QLQ-ANGVAAACLNSTQTREQQLEVMTGCRTG-------------------------QIRLLYIAPERLM-LDNFLEHLA 136 (523)
T ss_dssp HHH-HTTCCEEEECTTSCHHHHHHHHHHHHHT-------------------------CCSEEEECHHHHT-STTHHHHHT
T ss_pred HHH-HcCCcEEEEeCCCCHHHHHHHHHHHhcC-------------------------CCCEEEECHHHHh-ChHHHHHHh
Confidence 887 5899999999999988887777777654 6899999999997 455544432
Q ss_pred HHHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 343 CLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 343 ~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
.. ++.+||||||||+
T Consensus 137 ----~~--------------------~~~~vViDEaH~i 151 (523)
T 1oyw_A 137 ----HW--------------------NPVLLAVDEAHCI 151 (523)
T ss_dssp ----TS--------------------CEEEEEESSGGGG
T ss_pred ----hC--------------------CCCEEEEeCcccc
Confidence 12 7999999999996
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.83 E-value=2e-20 Score=171.13 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
|+.+..-+.+...+.+ +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 31 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 31 FYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 3334333344444433 89999999999999999999999999999999999997
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=166.03 Aligned_cols=145 Identities=23% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCCHHH-HhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHH-------hhcCCc
Q 042872 201 TLSFEE-LQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLN-------LKFGIP 271 (381)
Q Consensus 201 ~~~fe~-L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~-------~~~gI~ 271 (381)
..+|+. +...+++..++.+ +||..|||+|.++|+.++.|+|+++.+|||+|||++|+-- +..+. ...+.+
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 96 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCS
T ss_pred hhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCc
Confidence 345777 5656666666655 7999999999999999999999999999999999999721 22221 124566
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhccc-C-------CCCCccEEEECccccccCcchHHHHHH
Q 042872 272 ATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASR-K-------DKPSCKLLYVTPERIVGNQSFSEVLKC 343 (381)
Q Consensus 272 a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~IL~aTPErL~~~~~f~~~L~~ 343 (381)
++++... .+-..++.+.+++- ....+......++ . ....++|+|+|||+|..
T Consensus 97 ~lil~Pt--~~L~~q~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~---------- 156 (228)
T 3iuy_A 97 MLVLTPT--RELALHVEAECSKY--------SYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLND---------- 156 (228)
T ss_dssp EEEECSS--HHHHHHHHHHHHHH--------CCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHH----------
T ss_pred EEEEeCC--HHHHHHHHHHHHHh--------cccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHH----------
Confidence 7777643 32222233333210 0000000000000 0 01247999999999862
Q ss_pred HHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 344 LHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 344 L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
+...+.+.++ ++.+|||||||++
T Consensus 157 ~~~~~~~~~~---------------~~~~lViDEah~~ 179 (228)
T 3iuy_A 157 LQMNNSVNLR---------------SITYLVIDEADKM 179 (228)
T ss_dssp HHHTTCCCCT---------------TCCEEEECCHHHH
T ss_pred HHHcCCcCcc---------------cceEEEEECHHHH
Confidence 1223334444 8999999999974
No 5
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=6e-20 Score=162.03 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=45.0
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
|+.+..-+++...+.. +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 5 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 5 FEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp GGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHH
T ss_pred hhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHH
Confidence 4444444445555544 89999999999999999999999999999999999997
No 6
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=168.05 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=45.9
Q ss_pred CHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 203 SFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 203 ~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
+|+.+..-+.+...+. .+||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 44 ~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 44 TFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CTGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CHHHcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 4555554455555554 389999999999999999999999999999999999997
No 7
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=168.20 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 213 l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
+...+.. +||..|||+|.++|+.++.|+|+++++|||+|||++|+
T Consensus 65 l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 65 TLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp HHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHH
T ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHH
Confidence 3444433 89999999999999999999999999999999999997
No 8
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.79 E-value=1.8e-19 Score=163.49 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=47.8
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
.+|+.+..-+.+...+.+ +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 24 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 456666655556666644 89999999999999999999999999999999999996
No 9
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.79 E-value=2.5e-19 Score=160.39 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=54.8
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHh-hcCCcEEEEeC
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNL-KFGIPATFLNS 277 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~-~~gI~a~~l~g 277 (381)
.+|+.+..-+.+...+.. +||..|||+|.++|+.++.|+|+++.+|||+|||++|+-. +..+.. ..+.+++++..
T Consensus 14 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 90 (224)
T ss_dssp CCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 456666655556655544 8999999999999999999999999999999999998621 222211 12345666654
No 10
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=9.1e-19 Score=156.62 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
|+.+..-+++...+.. +||..|||+|.++|+.+++|+|+++.+|||+|||++|+
T Consensus 16 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~ 69 (220)
T 1t6n_A 16 FRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 69 (220)
T ss_dssp STTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhh
Confidence 3333333333344433 89999999999999999999999999999999999997
No 11
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.78 E-value=2.2e-19 Score=164.01 Aligned_cols=150 Identities=16% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHH-HHHh-hcCCcEEEEeCCC
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQII-TLNL-KFGIPATFLNSQQ 279 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~-~L~~-~~gI~a~~l~g~~ 279 (381)
.+|+.+..-+++...+. .+||..|||+|.++|+.++.|+|+++.+|||+|||++|+-.+. .+.. ..+.+++++...
T Consensus 30 ~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt- 107 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIY-AYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT- 107 (237)
T ss_dssp CSGGGSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS-
T ss_pred CChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc-
Confidence 45666665555555554 4899999999999999999999999999999999999972222 2211 134566666543
Q ss_pred CHHHHHHHHHHHHhchhhhhh-hhhhhhhhhhhh---cccCCCCCccEEEECccccccCcchHHHHHHHHhcCCcccccc
Q 042872 280 TVSQAAAVLQELRQGLVLSQH-YFLHQLIFVLTC---ASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVL 355 (381)
Q Consensus 280 ~~~e~~~il~~lr~g~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~ 355 (381)
.+-..++.+.+++ +.... ............ ........++|+|+||++|.. +..++.+.++
T Consensus 108 -~~L~~q~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~----------~l~~~~~~~~-- 172 (237)
T 3bor_A 108 -RELAQQIQKVILA--LGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD----------MLNRRYLSPK-- 172 (237)
T ss_dssp -HHHHHHHHHHHHH--HTTTTTCCEEEECC-------------CCCSEEEECHHHHHH----------HHHTTSSCST--
T ss_pred -HHHHHHHHHHHHH--HhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHH----------HHHhCCcCcc--
Confidence 2222223333321 00000 000000000000 001112248999999999862 1123333344
Q ss_pred ccccccccccccCCccEEEEeccccC
Q 042872 356 TTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 356 ~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
.+.+|||||||++
T Consensus 173 -------------~~~~lViDEah~~ 185 (237)
T 3bor_A 173 -------------WIKMFVLDEADEM 185 (237)
T ss_dssp -------------TCCEEEEESHHHH
T ss_pred -------------cCcEEEECCchHh
Confidence 8999999999974
No 12
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.78 E-value=3.8e-19 Score=176.73 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=86.6
Q ss_pred CHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHhh------cCCcEEEE
Q 042872 203 SFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLK------FGIPATFL 275 (381)
Q Consensus 203 ~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~------~gI~a~~l 275 (381)
+|+.+..-+.+...+. .+||..|||+|.+|||.+++|+|+++++|||+|||++|+-. +..+... .+.+++++
T Consensus 57 ~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 57 HFTSADLRDIIIDNVN-KSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred ChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 4555554444444443 38999999999999999999999999999999999999722 2233211 14466666
Q ss_pred eCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhh---cccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccc
Q 042872 276 NSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTC---ASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRL 352 (381)
Q Consensus 276 ~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l 352 (381)
... ++-..++.+.+++- ..........+.+... .......+++|+|+||++|.. +..++.+.+
T Consensus 136 ~Pt--reLa~Q~~~~~~~~--~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~----------~l~~~~~~l 201 (434)
T 2db3_A 136 SPT--RELAIQIFNEARKF--AFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLD----------FVDRTFITF 201 (434)
T ss_dssp CSS--HHHHHHHHHHHHHH--TTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHH----------HHHTTSCCC
T ss_pred ecC--HHHHHHHHHHHHHH--hccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHH----------HHHhCCccc
Confidence 543 33222333332210 0000000000000000 000012358999999999962 123344444
Q ss_pred cccccccccccccccCCccEEEEeccccC
Q 042872 353 KVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 353 ~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
+ ++.+|||||||++
T Consensus 202 ~---------------~~~~lVlDEah~~ 215 (434)
T 2db3_A 202 E---------------DTRFVVLDEADRM 215 (434)
T ss_dssp T---------------TCCEEEEETHHHH
T ss_pred c---------------cCCeEEEccHhhh
Confidence 5 8999999999973
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.78 E-value=9.5e-20 Score=163.56 Aligned_cols=148 Identities=16% Similarity=0.062 Sum_probs=86.4
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHH-HHHHh-hcCCcEEEEeCCCCH
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQI-ITLNL-KFGIPATFLNSQQTV 281 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv-~~L~~-~~gI~a~~l~g~~~~ 281 (381)
|+.+..-+.+..++.+ +||..|||+|.++|+.+++|+|+++.+|||+|||++|+--+ ..+.. ..+.+++++... .
T Consensus 6 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt--~ 82 (219)
T 1q0u_A 6 FTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT--R 82 (219)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS--H
T ss_pred HhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc--H
Confidence 4444444445555543 89999999999999999999999999999999999997222 22211 124677777653 2
Q ss_pred HHHHHHHHHHHhchhhhhhhhh-hhhh---h-h--hhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccc
Q 042872 282 SQAAAVLQELRQGLVLSQHYFL-HQLI---F-V--LTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKV 354 (381)
Q Consensus 282 ~e~~~il~~lr~g~~~~~~~~~-~~~~---~-~--~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~ 354 (381)
+-..++.+.+++- ....... .-.+ . . ...........++|+|+|||++.. +..++.+.++
T Consensus 83 ~L~~q~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~----------~l~~~~~~~~- 149 (219)
T 1q0u_A 83 ELATQIYHETLKI--TKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRIND----------FIREQALDVH- 149 (219)
T ss_dssp HHHHHHHHHHHHH--HTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHH----------HHHTTCCCGG-
T ss_pred HHHHHHHHHHHHH--hhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHH----------HHHcCCCCcC-
Confidence 2222233322210 0000000 0000 0 0 000011122367999999999962 1123334444
Q ss_pred cccccccccccccCCccEEEEeccccC
Q 042872 355 LTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 355 ~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++.+|||||||++
T Consensus 150 --------------~~~~lViDEah~~ 162 (219)
T 1q0u_A 150 --------------TAHILVVDEADLM 162 (219)
T ss_dssp --------------GCCEEEECSHHHH
T ss_pred --------------cceEEEEcCchHH
Confidence 8999999999974
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=1.1e-18 Score=153.79 Aligned_cols=141 Identities=23% Similarity=0.211 Sum_probs=83.7
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHH-HHh----hcCCcEEEEeCC
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIIT-LNL----KFGIPATFLNSQ 278 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~-L~~----~~gI~a~~l~g~ 278 (381)
|+.+..-+++...+.+ +||..|||+|.++|+.+++|+|+++.+|||+|||++|+-.+.. +.. ..+.+++++...
T Consensus 3 f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 3 FKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred hhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 4444444444444544 8999999999999999999999999999999999998732222 110 134566666543
Q ss_pred CCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCC--------CCCccEEEECccccccCcchHHHHHHHHhcCCc
Q 042872 279 QTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKD--------KPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSI 350 (381)
Q Consensus 279 ~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~ 350 (381)
..-..++.+.+++- ... .......++.. ...++|+|+||+++.. .+ .++.+
T Consensus 82 --~~L~~q~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~----~~~~~ 140 (207)
T 2gxq_A 82 --RELALQVASELTAV--------APH-LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALD------YL----RQGVL 140 (207)
T ss_dssp --HHHHHHHHHHHHHH--------CTT-SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHH------HH----HHTSS
T ss_pred --HHHHHHHHHHHHHH--------hhc-ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHH------HH----HcCCc
Confidence 22222233333210 000 00000000000 0247899999999862 11 22333
Q ss_pred cccccccccccccccccCCccEEEEeccccC
Q 042872 351 RLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 351 ~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
.+. ++.+|||||||++
T Consensus 141 ~~~---------------~~~~iViDEah~~ 156 (207)
T 2gxq_A 141 DLS---------------RVEVAVLDEADEM 156 (207)
T ss_dssp CCT---------------TCSEEEEESHHHH
T ss_pred chh---------------hceEEEEEChhHh
Confidence 344 8999999999973
No 15
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=160.71 Aligned_cols=143 Identities=20% Similarity=0.223 Sum_probs=85.1
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHh-----hcCCcEEEEeC
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNL-----KFGIPATFLNS 277 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~-----~~gI~a~~l~g 277 (381)
|+.+...+.+...+.+ +||..|+|+|.++|+.++.|+|+++.+|||+|||++|+-- +..+.. ..+.+++++..
T Consensus 27 f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~P 105 (236)
T 2pl3_A 27 FSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISP 105 (236)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECS
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeC
Confidence 4444444444444443 8999999999999999999999999999999999999722 222211 23567777764
Q ss_pred CCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhc-cc-------CCCCCccEEEECccccccCcchHHHHHHHHhcCC
Q 042872 278 QQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCA-SR-------KDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGS 349 (381)
Q Consensus 278 ~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~ 349 (381)
. ..-..++.+.++. +..... ....+. ++ .....++|+|+||++|.. .+.....
T Consensus 106 t--~~L~~q~~~~~~~--~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~---------~l~~~~~ 166 (236)
T 2pl3_A 106 T--RELAYQTFEVLRK--VGKNHD------FSAGLIIGGKDLKHEAERINNINILVCTPGRLLQ---------HMDETVS 166 (236)
T ss_dssp S--HHHHHHHHHHHHH--HTTTSS------CCEEEECCC--CHHHHHHHTTCSEEEECHHHHHH---------HHHHCSS
T ss_pred C--HHHHHHHHHHHHH--HhCCCC------eeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHH---------HHHhcCC
Confidence 3 2222223333321 000000 000000 00 001257999999999962 1222222
Q ss_pred ccccccccccccccccccCCccEEEEeccccC
Q 042872 350 IRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 350 ~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
+.+. ++.+|||||||++
T Consensus 167 ~~~~---------------~~~~lViDEah~~ 183 (236)
T 2pl3_A 167 FHAT---------------DLQMLVLDEADRI 183 (236)
T ss_dssp CCCT---------------TCCEEEETTHHHH
T ss_pred cccc---------------cccEEEEeChHHH
Confidence 3333 8999999999974
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.77 E-value=2.4e-18 Score=166.10 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=48.3
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
.+|+.+..-+++...+.. +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 37 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92 (410)
T ss_dssp CSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHH
Confidence 457777666666666644 89999999999999999999999999999999999997
No 17
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.77 E-value=7.7e-19 Score=160.92 Aligned_cols=54 Identities=22% Similarity=0.331 Sum_probs=43.2
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
|+.+..-+.+..++. .+||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 25 f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 25 FDELKLDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp SGGGSCCCSTTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred HhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 444433333333332 289999999999999999999999999999999999997
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.76 E-value=1e-18 Score=170.26 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=91.2
Q ss_pred chHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH-----------------------H-HHHHHH
Q 042872 210 LDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ-----------------------D-QIITLN 265 (381)
Q Consensus 210 l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~-----------------------d-Qv~~L~ 265 (381)
++++...+++.+|| +|+|+|.+||+.++.|+|+++.+|||+|||++|+ . +...+.
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 44566677788999 6999999999999999999999999999999987 2 233333
Q ss_pred hh--cCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHH
Q 042872 266 LK--FGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKC 343 (381)
Q Consensus 266 ~~--~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~ 343 (381)
.. .++++..++|+.+..++...+..+..| .++|+|+||++|.. . +..
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-------------------------~~~Iiv~Tp~~l~~--~----l~~ 134 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEED-------------------------DYHILVFSTQFVSK--N----REK 134 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-------------------------CCSEEEEEHHHHHH--C----HHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcC-------------------------CCCEEEECHHHHHH--H----HHH
Confidence 21 477888888888877766667766643 58999999999973 1 111
Q ss_pred HHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 344 LHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 344 L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
+ .+. ++.+||||||||+
T Consensus 135 ~------~~~---------------~~~~iViDEaH~~ 151 (414)
T 3oiy_A 135 L------SQK---------------RFDFVFVDDVDAV 151 (414)
T ss_dssp H------TTC---------------CCSEEEESCHHHH
T ss_pred h------ccc---------------cccEEEEeChHhh
Confidence 1 122 8999999999974
No 19
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=166.00 Aligned_cols=151 Identities=19% Similarity=0.124 Sum_probs=91.2
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcC--CCEEEECCCCCCchhhHHH-HHHHHHh-hcCCcEEEEeC
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAK--QDCFVLLPTGGGKSLCYQD-QIITLNL-KFGIPATFLNS 277 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~G--rDvLviaPTGsGKTLaF~d-Qv~~L~~-~~gI~a~~l~g 277 (381)
.+|+.+..-+.+...+.. +||..|+|+|.+|||.++.| +|+++.+|||+|||+||+- -+..+.. ..+.+++++..
T Consensus 92 ~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~P 170 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (300)
T ss_dssp CCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcC
Confidence 346666655555555544 89999999999999999998 9999999999999999972 2222221 22446777765
Q ss_pred CCCHHHHHHHHHHHHhchhhhhh-hhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccc
Q 042872 278 QQTVSQAAAVLQELRQGLVLSQH-YFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLT 356 (381)
Q Consensus 278 ~~~~~e~~~il~~lr~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~ 356 (381)
. ++-..++.+.++. +.... ....................++|||+||++|.. .+...+.+.++
T Consensus 171 t--reLa~Q~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~---------~l~~~~~~~l~--- 234 (300)
T 3fmo_B 171 T--YELALQTGKVIEQ--MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLD---------WCSKLKFIDPK--- 234 (300)
T ss_dssp S--HHHHHHHHHHHHH--HTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHH---------HHTTTCCCCGG---
T ss_pred c--HHHHHHHHHHHHH--HHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHH---------HHHhcCCCChh---
Confidence 3 3332333222221 00000 000000000011112223467999999999962 23233445555
Q ss_pred cccccccccccCCccEEEEeccccC
Q 042872 357 TDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 357 ~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++.+|||||||++
T Consensus 235 ------------~l~~lVlDEad~l 247 (300)
T 3fmo_B 235 ------------KIKVFVLDEADVM 247 (300)
T ss_dssp ------------GCSEEEETTHHHH
T ss_pred ------------hceEEEEeCHHHH
Confidence 8999999999974
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=165.06 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=45.5
Q ss_pred CHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 203 SFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 203 ~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
+|+.+..-+.+...+.. +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 16 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 70 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFL 70 (417)
T ss_dssp SGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHH
Confidence 35555544445555433 89999999999999999999999999999999999997
No 21
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=151.14 Aligned_cols=152 Identities=22% Similarity=0.329 Sum_probs=90.7
Q ss_pred CCHHHH----hhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHh--hcCCcEEE
Q 042872 202 LSFEEL----QALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNL--KFGIPATF 274 (381)
Q Consensus 202 ~~fe~L----~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~--~~gI~a~~ 274 (381)
.+|+.+ ..-+.+...+.+ +||..|||+|.++|+.++.|+|+++.+|||+|||++|+-. +..+.. ..+.++++
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~li 103 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALI 103 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEE
T ss_pred cCHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEE
Confidence 457766 344455555544 8999999999999999999999999999999999999732 233321 13567777
Q ss_pred EeCCCCHHHHHHHHHHHHh---chhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhc-CCc
Q 042872 275 LNSQQTVSQAAAVLQELRQ---GLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRK-GSI 350 (381)
Q Consensus 275 l~g~~~~~e~~~il~~lr~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~-g~~ 350 (381)
+... .+-..++.+.++. +.-...+ ..+................++|+|+||++|.. . +... ..+
T Consensus 104 l~Pt--~~L~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~------~---l~~~~~~~ 171 (245)
T 3dkp_A 104 ISPT--RELASQIHRELIKISEGTGFRIH-MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY------L---LKQDPPGI 171 (245)
T ss_dssp ECSS--HHHHHHHHHHHHHHTTTSCCCEE-CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH------H---HHSSSCSC
T ss_pred EeCC--HHHHHHHHHHHHHHhcccCceEE-EEecCccHHHHhhhhhcCCCCEEEECHHHHHH------H---HHhCCCCc
Confidence 7653 3322233333321 0000000 00000000001112334578999999999962 1 1111 123
Q ss_pred cccccccccccccccccCCccEEEEeccccC
Q 042872 351 RLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 351 ~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
.++ ++.+|||||||++
T Consensus 172 ~~~---------------~~~~lViDEah~~ 187 (245)
T 3dkp_A 172 DLA---------------SVEWLVVDESDKL 187 (245)
T ss_dssp CCT---------------TCCEEEESSHHHH
T ss_pred ccc---------------cCcEEEEeChHHh
Confidence 444 8999999999974
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.73 E-value=1.1e-17 Score=159.30 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=46.6
Q ss_pred CHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 203 SFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 203 ~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
+|+.+..-+.+..++.. +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 9 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 63 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 63 (391)
T ss_dssp CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHH
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHH
Confidence 45665555555555544 89999999999999999999999999999999999996
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=158.88 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=47.6
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
.+|+.+..-+.+...+.+ +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 40 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 456666655555555544 89999999999999999999999999999999999996
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=1.9e-17 Score=154.04 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 213 l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
+..++. .+||..|||+|.++|+.+++|+++++.+|||+|||++|+
T Consensus 5 i~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 5 IEQAIR-EMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred HHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHH
Confidence 334443 489999999999999999999999999999999999997
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.72 E-value=1.2e-17 Score=160.31 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=54.9
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHH-HHh-hcCCcEEEEeC
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIIT-LNL-KFGIPATFLNS 277 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~-L~~-~~gI~a~~l~g 277 (381)
.+|+.+..-+++...+.+ +||..|||+|.++|+.++.|+++++.+|||+|||++|+-.+.. +.. ..+.+++++..
T Consensus 21 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 456666655556555544 8999999999999999999999999999999999999722221 111 12446666654
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.72 E-value=1.6e-17 Score=158.01 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
.+|+.+..-+.+...+.. +||..|||+|.++|+.++.|+|+++.+|||+|||++|+
T Consensus 21 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345666555555555544 89999999999999999999999999999999999986
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=5.6e-17 Score=166.44 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=55.5
Q ss_pred CCCCHHHHh----hchHHHHHHHHHhCCCCCcHHHHHHHHHHH--cCCCEEEECCCCCCchhhHHHH-HHHHHhh-----
Q 042872 200 GTLSFEELQ----ALDDMEFANVVIFGNRAFRPLQHQACKASV--AKQDCFVLLPTGGGKSLCYQDQ-IITLNLK----- 267 (381)
Q Consensus 200 ~~~~fe~L~----~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL--~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~----- 267 (381)
..++++.+. +-+++..++ +.+||..|||+|.++|+.++ .|+|+|+.||||+|||+||+-. +..+...
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHH-HTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCcCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 345666665 334454555 44899999999999999999 7899999999999999999822 2222211
Q ss_pred cCCcEEEEeCC
Q 042872 268 FGIPATFLNSQ 278 (381)
Q Consensus 268 ~gI~a~~l~g~ 278 (381)
.+.+++++...
T Consensus 94 ~~~~~lvl~Pt 104 (579)
T 3sqw_A 94 YMVKAVIVAPT 104 (579)
T ss_dssp TSCCEEEECSS
T ss_pred CCCeEEEEcch
Confidence 13567777653
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.70 E-value=5.4e-17 Score=152.26 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcC-CCEEEECCCCCCchhhHHHHHHHHH-hhcCCcEEEEeC
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAK-QDCFVLLPTGGGKSLCYQDQIITLN-LKFGIPATFLNS 277 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~G-rDvLviaPTGsGKTLaF~dQv~~L~-~~~gI~a~~l~g 277 (381)
++|+.+...+.+...+.+ +||..|||+|.++|+.++.| +++++.+|||+|||++|+-.+..+. ...+.+++++..
T Consensus 6 ~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 456666655556555554 89999999999999999998 7999999999999999973322221 112456666654
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.69 E-value=8e-17 Score=163.18 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=54.0
Q ss_pred CCCHHHHh----hchHHHHHHHHHhCCCCCcHHHHHHHHHHH--cCCCEEEECCCCCCchhhHHHH-HHHHHhh-----c
Q 042872 201 TLSFEELQ----ALDDMEFANVVIFGNRAFRPLQHQACKASV--AKQDCFVLLPTGGGKSLCYQDQ-IITLNLK-----F 268 (381)
Q Consensus 201 ~~~fe~L~----~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL--~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~-----~ 268 (381)
..+++.+. .-+++..++ ..+||..|||+|.+||+.++ .|+|+|+.||||+|||+||+-. +..+... .
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 145 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 145 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHH-HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccC
Confidence 34566654 333444444 44899999999999999999 6789999999999999999822 2222211 1
Q ss_pred CCcEEEEeCC
Q 042872 269 GIPATFLNSQ 278 (381)
Q Consensus 269 gI~a~~l~g~ 278 (381)
+.+++++...
T Consensus 146 ~~~~lil~Pt 155 (563)
T 3i5x_A 146 MVKAVIVAPT 155 (563)
T ss_dssp SCCEEEECSS
T ss_pred CeeEEEEcCc
Confidence 3467777653
No 30
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.67 E-value=1.4e-16 Score=152.40 Aligned_cols=150 Identities=19% Similarity=0.130 Sum_probs=87.4
Q ss_pred CHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcC--CCEEEECCCCCCchhhHHHHH-HHHHh-hcCCcEEEEeCC
Q 042872 203 SFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAK--QDCFVLLPTGGGKSLCYQDQI-ITLNL-KFGIPATFLNSQ 278 (381)
Q Consensus 203 ~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~G--rDvLviaPTGsGKTLaF~dQv-~~L~~-~~gI~a~~l~g~ 278 (381)
+|+.+..-+.+...+.+ +||..|||+|.++|+.++.| +++++.+|||+|||++|+-.+ ..+.. ..+.+++++...
T Consensus 26 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 26 SFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp CTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 45555555555555544 89999999999999999997 999999999999999996222 22221 123467777553
Q ss_pred CCHHHHHHHHHHHHhchhhhhhhhh-hhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCcccccccc
Q 042872 279 QTVSQAAAVLQELRQGLVLSQHYFL-HQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTT 357 (381)
Q Consensus 279 ~~~~e~~~il~~lr~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~ 357 (381)
..-..++.+.+++ +....... .................++|+|+||++|.. .+...+.+.+.
T Consensus 105 --~~L~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~---------~~~~~~~~~~~---- 167 (412)
T 3fht_A 105 --YELALQTGKVIEQ--MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLD---------WCSKLKFIDPK---- 167 (412)
T ss_dssp --HHHHHHHHHHHHH--HTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHH---------HHTTSCSSCGG----
T ss_pred --HHHHHHHHHHHHH--HHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHH---------HHHhcCCcChh----
Confidence 2222222222220 00000000 000000000112223357999999999962 22223333444
Q ss_pred ccccccccccCCccEEEEeccccC
Q 042872 358 DVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 358 ~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++.+|||||||++
T Consensus 168 -----------~~~~iViDEah~~ 180 (412)
T 3fht_A 168 -----------KIKVFVLDEADVM 180 (412)
T ss_dssp -----------GCCEEEEETHHHH
T ss_pred -----------hCcEEEEeCHHHH
Confidence 8999999999963
No 31
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.66 E-value=9.9e-17 Score=151.95 Aligned_cols=139 Identities=18% Similarity=0.229 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHcC--CCEEEECCCCCCchhhHHHHHHH-HHh-hcCCcEEEEeCCCCHHHHHHH
Q 042872 212 DMEFANVVIFGNRAFRPLQHQACKASVAK--QDCFVLLPTGGGKSLCYQDQIIT-LNL-KFGIPATFLNSQQTVSQAAAV 287 (381)
Q Consensus 212 ~l~~~~~~~fG~~~fRpiQ~eAI~aiL~G--rDvLviaPTGsGKTLaF~dQv~~-L~~-~~gI~a~~l~g~~~~~e~~~i 287 (381)
++...+.+ +||..|||+|.++|+.++.| +++++.+|||+|||++|+-.+.. +.. ..+.+++++... ..-..++
T Consensus 15 ~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~--~~L~~q~ 91 (395)
T 3pey_A 15 ELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS--RELARQT 91 (395)
T ss_dssp HHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS--HHHHHHH
T ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC--HHHHHHH
Confidence 33334433 89999999999999999998 99999999999999999733222 111 134567777653 2222223
Q ss_pred HHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCcccccccccccccccccc
Q 042872 288 LQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQ 367 (381)
Q Consensus 288 l~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~ 367 (381)
.+.++. +........... ............++|+|+||++|.. +..++.+.+.
T Consensus 92 ~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~iiv~T~~~l~~----------~~~~~~~~~~-------------- 144 (395)
T 3pey_A 92 LEVVQE--MGKFTKITSQLI-VPDSFEKNKQINAQVIVGTPGTVLD----------LMRRKLMQLQ-------------- 144 (395)
T ss_dssp HHHHHH--HTTTSCCCEEEE-STTSSCTTSCBCCSEEEECHHHHHH----------HHHTTCBCCT--------------
T ss_pred HHHHHH--HhcccCeeEEEE-ecCchhhhccCCCCEEEEcHHHHHH----------HHHcCCcccc--------------
Confidence 333321 000000000000 0000112223368999999999962 1122333333
Q ss_pred CCccEEEEeccccC
Q 042872 368 RQLAGFVVDEAHCV 381 (381)
Q Consensus 368 ~~L~~lVIDEAHcI 381 (381)
++.+|||||||++
T Consensus 145 -~~~~iIiDEah~~ 157 (395)
T 3pey_A 145 -KIKIFVLDEADNM 157 (395)
T ss_dssp -TCCEEEEETHHHH
T ss_pred -cCCEEEEEChhhh
Confidence 8999999999973
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.65 E-value=2.2e-16 Score=163.56 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=43.5
Q ss_pred HhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhc----CCcEEEEeC
Q 042872 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKF----GIPATFLNS 277 (381)
Q Consensus 220 ~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~----gI~a~~l~g 277 (381)
.+||..|||+|.++|+.++.|+|+|+++|||+|||++|+-.+....... +.+++++..
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~P 69 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN 69 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECS
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEEC
Confidence 3899999999999999999999999999999999999983332221122 146666655
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=154.32 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=86.9
Q ss_pred CHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHHHcC--CCEEEECCCCCCchhhHHHHHH-HHHh-hcCCcEEEEeCC
Q 042872 203 SFEELQALDDMEFANVVIFGNRAFRPLQHQACKASVAK--QDCFVLLPTGGGKSLCYQDQII-TLNL-KFGIPATFLNSQ 278 (381)
Q Consensus 203 ~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~G--rDvLviaPTGsGKTLaF~dQv~-~L~~-~~gI~a~~l~g~ 278 (381)
+|+.+..-+++...+.. +||..|+|+|.+||+.++.| +|+|+.+|||+|||++|+-.+. .+.. ..+.+++++...
T Consensus 93 ~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 45555555555555544 89999999999999999987 9999999999999999962221 1211 123367777653
Q ss_pred CCHHHHHHH---HHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCcccccc
Q 042872 279 QTVSQAAAV---LQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVL 355 (381)
Q Consensus 279 ~~~~e~~~i---l~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~ 355 (381)
..-..++ ++.+... .. .....................+|||+||++|.. .+...+.+.+.
T Consensus 172 --~~La~Q~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~---------~l~~~~~~~~~-- 234 (479)
T 3fmp_B 172 --YELALQTGKVIEQMGKF--YP--ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLD---------WCSKLKFIDPK-- 234 (479)
T ss_dssp --HHHHHHHHHHHHHHHTT--ST--TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHH---------HHTTSCCCCGG--
T ss_pred --HHHHHHHHHHHHHHHhh--CC--CceEEEEeCCccccccccCCCCEEEECchHHHH---------HHHhcCCcCcc--
Confidence 2222222 2222110 00 000000000000112223356899999999962 22233334444
Q ss_pred ccccccccccccCCccEEEEeccccC
Q 042872 356 TTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 356 ~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++.+|||||||++
T Consensus 235 -------------~~~~iViDEah~~ 247 (479)
T 3fmp_B 235 -------------KIKVFVLDEADVM 247 (479)
T ss_dssp -------------GCCEEEECCHHHH
T ss_pred -------------cCCEEEEECHHHH
Confidence 8999999999963
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.62 E-value=7.8e-16 Score=153.29 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=41.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHH-HHhhc---CCcEEEEeCC
Q 042872 222 GNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIIT-LNLKF---GIPATFLNSQ 278 (381)
Q Consensus 222 G~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~-L~~~~---gI~a~~l~g~ 278 (381)
+.-+|||+|.++|+.++.|+|+++.+|||+|||++|+--+.. +.... +.+++++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 344799999999999999999999999999999999733322 22111 5566666553
No 35
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.62 E-value=7.4e-16 Score=171.42 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=89.2
Q ss_pred chHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH------------------------HHHHHHH
Q 042872 210 LDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ------------------------DQIITLN 265 (381)
Q Consensus 210 l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~------------------------dQv~~L~ 265 (381)
..++...+...+|| +|+|+|.+||+.++.|+|++++||||+|||++|+ ++...+.
T Consensus 64 ~~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 64 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp HHHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHH
Confidence 34455566677899 5999999999999999999999999999999886 2233343
Q ss_pred h--hcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHH
Q 042872 266 L--KFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKC 343 (381)
Q Consensus 266 ~--~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~ 343 (381)
. ..++++..++|+.+..++...++.+++| .++|||+||++|... +..
T Consensus 143 ~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-------------------------~~~IlV~Tp~rL~~~------l~~ 191 (1104)
T 4ddu_A 143 KLADEKVKIFGFYSSMKKEEKEKFEKSFEED-------------------------DYHILVFSTQFVSKN------REK 191 (1104)
T ss_dssp TTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-------------------------CCSEEEEEHHHHHHS------HHH
T ss_pred HhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-------------------------CCCEEEECHHHHHHH------HHh
Confidence 2 2467888888888776666666666643 589999999999631 111
Q ss_pred HHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 344 LHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 344 L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
+ .++ ++.+||||||||+
T Consensus 192 l------~~~---------------~l~~lViDEaH~l 208 (1104)
T 4ddu_A 192 L------SQK---------------RFDFVFVDDVDAV 208 (1104)
T ss_dssp H------HTS---------------CCSEEEESCHHHH
T ss_pred h------ccc---------------CcCEEEEeCCCcc
Confidence 1 122 8999999999973
No 36
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.61 E-value=9.5e-16 Score=151.95 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHH-HHHhhc---CCcEEEEeCC
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQII-TLNLKF---GIPATFLNSQ 278 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~-~L~~~~---gI~a~~l~g~ 278 (381)
+|||+|.++|+.++.|+|+++.+|||+|||++|+--+. .+.... +.+++++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 68999999999999999999999999999999983332 222111 5667777653
No 37
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.59 E-value=2.4e-15 Score=160.52 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=41.1
Q ss_pred HhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHH-HHhhc---CCcEEEEeC
Q 042872 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIIT-LNLKF---GIPATFLNS 277 (381)
Q Consensus 220 ~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~-L~~~~---gI~a~~l~g 277 (381)
.+|+..|||+|.++|+.++.|+|+|+.+|||+|||++|+--+.. +.... +.+++++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 37899999999999999999999999999999999999833222 22111 556666654
No 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.56 E-value=1.7e-15 Score=167.45 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 211 DDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 211 ~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
.++...+.+.+||. | |+|.++|+.++.|+|+++++|||+|||+ |+
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~ 88 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FG 88 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HH
Confidence 34556666779999 9 9999999999999999999999999998 55
No 39
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=155.27 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHH-HHhh----cCCcEEEEeCCCCH-HHH-HHHHHHHHhchhh
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIIT-LNLK----FGIPATFLNSQQTV-SQA-AAVLQELRQGLVL 297 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~-L~~~----~gI~a~~l~g~~~~-~e~-~~il~~lr~g~~~ 297 (381)
.|||+|.++|+.++.|+|+|+.+|||+|||++|+--+.. +... .+.+++++...... .++ ...++.+-.+
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT---
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc---
Confidence 699999999999999999999999999999999832222 2111 12566666664422 222 3333332100
Q ss_pred hhhhhhhhhhhhhhhcccCC-------CCCccEEEECccccccCcchHHHHHHHH--hcCCccccccccccccccccccC
Q 042872 298 SQHYFLHQLIFVLTCASRKD-------KPSCKLLYVTPERIVGNQSFSEVLKCLH--RKGSIRLKVLTTDVVVLPHTCQR 368 (381)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~-------~~~~~IL~aTPErL~~~~~f~~~L~~L~--~~g~~~l~~~~~~~v~~~~~~~~ 368 (381)
.-.+..+ ...... ...++|||+|||+|.. .+.... ..+.+.+.
T Consensus 84 ------~~~v~~~-~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~------~l~~~~~~~~~~~~~~--------------- 135 (699)
T 4gl2_A 84 ------WYRVIGL-SGDTQLKISFPEVVKSCDIIISTAQILEN------SLLNLENGEDAGVQLS--------------- 135 (699)
T ss_dssp ------TSCEEEE-C----CCCCHHHHHHSCSEEEEEHHHHHH------HTC--------CCCGG---------------
T ss_pred ------CceEEEE-eCCcchhhHHHhhhcCCCEEEECHHHHHH------HHhccccccccceecc---------------
Confidence 0000000 000000 1358999999999972 110000 12223333
Q ss_pred CccEEEEeccccC
Q 042872 369 QLAGFVVDEAHCV 381 (381)
Q Consensus 369 ~L~~lVIDEAHcI 381 (381)
.+.+||||||||+
T Consensus 136 ~~~lvViDEaH~~ 148 (699)
T 4gl2_A 136 DFSLIIIDECHHT 148 (699)
T ss_dssp GCSEEEEESGGGC
T ss_pred cCcEEEEECcccc
Confidence 8999999999985
No 40
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=132.24 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=43.8
Q ss_pred hCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHH-Hh----hcCCcEEEEeCC
Q 042872 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITL-NL----KFGIPATFLNSQ 278 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L-~~----~~gI~a~~l~g~ 278 (381)
.+...|||+|.++++.++.++++++.+|||+|||++|+--+..+ .. ..+.+++++...
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 34457999999999999999999999999999999997322221 11 125677777653
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.55 E-value=2e-15 Score=158.57 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=85.1
Q ss_pred CHHHHh--hchHHHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeCCC
Q 042872 203 SFEELQ--ALDDMEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 203 ~fe~L~--~l~~l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g~~ 279 (381)
+|+.+. .-+.+...+.+ +||+.|+|+|.++++.++.|+++++++|||+|||++|.-- +..+. .+.+++++...
T Consensus 2 ~f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~P~- 77 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPL- 77 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESS-
T ss_pred chhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEeCc-
Confidence 456665 44445555544 8999999999999999999999999999999999999622 22332 25677777653
Q ss_pred CHHHHHHHHHHHHhchhhhhhhhhhhhhh---hhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccc
Q 042872 280 TVSQAAAVLQELRQGLVLSQHYFLHQLIF---VLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLT 356 (381)
Q Consensus 280 ~~~e~~~il~~lr~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~ 356 (381)
..-..++.+.++. +.. ....+. +............+|+|+|||++.. .+ +++...++
T Consensus 78 -r~La~q~~~~~~~--~~~----~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~------~l----~~~~~~l~--- 137 (702)
T 2p6r_A 78 -RALAGEKYESFKK--WEK----IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADS------LI----RNRASWIK--- 137 (702)
T ss_dssp -HHHHHHHHHHHTT--TTT----TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHH------HH----HTTCSGGG---
T ss_pred -HHHHHHHHHHHHH--HHh----cCCEEEEEeCCCCcchhhccCCCEEEECHHHHHH------HH----HcChhHHh---
Confidence 3233333333320 000 000000 0000111223378999999999862 11 12222233
Q ss_pred cccccccccccCCccEEEEeccccC
Q 042872 357 TDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 357 ~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++++|||||||++
T Consensus 138 ------------~~~~vIiDE~H~l 150 (702)
T 2p6r_A 138 ------------AVSCLVVDEIHLL 150 (702)
T ss_dssp ------------GCCEEEETTGGGG
T ss_pred ------------hcCEEEEeeeeec
Confidence 8999999999984
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.54 E-value=2.3e-15 Score=158.51 Aligned_cols=143 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred HHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHH-HHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeCCCCH
Q 042872 204 FEELQALDDMEFANVVIFGNRAFRPLQHQACKA-SVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNSQQTV 281 (381)
Q Consensus 204 fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~a-iL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g~~~~ 281 (381)
|+.+..-+.+...+.. +||..|+|+|.++|+. ++.|+++++++|||+|||++|.-. +..+. ..|.+++++..-..
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~~l~i~P~ra- 79 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL-TQGGKAVYIVPLKA- 79 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHH-HHCSEEEEECSSGG-
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCCEEEEEcCcHH-
Confidence 3344433334444433 8999999999999998 889999999999999999999522 23332 23667777765322
Q ss_pred HHHHHHHHHHHhchhhhhhhhhhhhhhhhhh---cccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccc
Q 042872 282 SQAAAVLQELRQGLVLSQHYFLHQLIFVLTC---ASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTD 358 (381)
Q Consensus 282 ~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~ 358 (381)
-..++.+.++. +.. ....+..++- ........++|+|+|||++.. .+. ++...++
T Consensus 80 -La~q~~~~~~~--l~~----~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~------~~~----~~~~~l~----- 137 (720)
T 2zj8_A 80 -LAEEKFQEFQD--WEK----IGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDS------LLR----HGSSWIK----- 137 (720)
T ss_dssp -GHHHHHHHTGG--GGG----GTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHH------HHH----HTCTTGG-----
T ss_pred -HHHHHHHHHHH--HHh----cCCEEEEecCCCCccccccCCCCEEEECHHHHHH------HHH----cChhhhh-----
Confidence 12222333220 000 0000000000 001112268999999999962 111 1222233
Q ss_pred cccccccccCCccEEEEeccccC
Q 042872 359 VVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 359 ~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++++|||||||++
T Consensus 138 ----------~~~~vIiDE~H~l 150 (720)
T 2zj8_A 138 ----------DVKILVADEIHLI 150 (720)
T ss_dssp ----------GEEEEEEETGGGG
T ss_pred ----------cCCEEEEECCccc
Confidence 8999999999985
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.53 E-value=2.2e-14 Score=154.78 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=86.9
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHcC------CCEEEECCCCCCchhhHH-----------------------HH-HHHHH
Q 042872 216 ANVVIFGNRAFRPLQHQACKASVAK------QDCFVLLPTGGGKSLCYQ-----------------------DQ-IITLN 265 (381)
Q Consensus 216 ~~~~~fG~~~fRpiQ~eAI~aiL~G------rDvLviaPTGsGKTLaF~-----------------------dQ-v~~L~ 265 (381)
.+...+|| .+|++|.+||+.++.+ +++|+++|||+|||++|+ .| ...+.
T Consensus 360 ~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 360 EFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp HHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHH
Confidence 34456799 8999999999999875 699999999999999997 22 33333
Q ss_pred ---hhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHH
Q 042872 266 ---LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLK 342 (381)
Q Consensus 266 ---~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~ 342 (381)
..+|+++..++|+.+..++...+..+..| .++|||+||+++..
T Consensus 439 ~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-------------------------~~~IvVgT~~ll~~--------- 484 (780)
T 1gm5_A 439 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-------------------------QIDVVIGTHALIQE--------- 484 (780)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-------------------------CCCEEEECTTHHHH---------
T ss_pred HHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-------------------------CCCEEEECHHHHhh---------
Confidence 23478999999999988888888887755 68999999987742
Q ss_pred HHHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 343 CLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 343 ~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
.+.+. ++++|||||||++
T Consensus 485 ------~~~~~---------------~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 485 ------DVHFK---------------NLGLVIIDEQHRF 502 (780)
T ss_dssp ------CCCCS---------------CCCEEEEESCCCC
T ss_pred ------hhhcc---------------CCceEEecccchh
Confidence 11222 8999999999984
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.52 E-value=6.5e-15 Score=154.52 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=87.5
Q ss_pred CCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHH-HHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeCCC
Q 042872 202 LSFEELQALDDMEFANVVIFGNRAFRPLQHQACKA-SVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 202 ~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~a-iL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g~~ 279 (381)
++|+.+..-+.+...+.. +||+.|+|+|.++|+. ++.|+++++++|||+|||++|.-- +..+. ..|.+++++..-
T Consensus 8 ~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~il~i~P~- 84 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL-KNGGKAIYVTPL- 84 (715)
T ss_dssp CBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHH-HSCSEEEEECSC-
T ss_pred CcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH-HCCCeEEEEeCc-
Confidence 456666544455555544 8999999999999999 788999999999999999999622 22333 246677776543
Q ss_pred CHHHHHHHHHHHHhchhhhhhhhhhhhhhhh---hhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccc
Q 042872 280 TVSQAAAVLQELRQGLVLSQHYFLHQLIFVL---TCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLT 356 (381)
Q Consensus 280 ~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~ 356 (381)
..-..++.+.++. +.. +...+..+ ...........+|+|+|||++.. .+. ++...++
T Consensus 85 -r~La~q~~~~~~~--~~~----~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~------~~~----~~~~~l~--- 144 (715)
T 2va8_A 85 -RALTNEKYLTFKD--WEL----IGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDS------LWR----HRPEWLN--- 144 (715)
T ss_dssp -HHHHHHHHHHHGG--GGG----GTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHH------HHH----HCCGGGG---
T ss_pred -HHHHHHHHHHHHH--hhc----CCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHH------HHh----CChhHhh---
Confidence 3333333433320 000 00000000 00011111268999999999962 111 1222233
Q ss_pred cccccccccccCCccEEEEeccccC
Q 042872 357 TDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 357 ~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
++++|||||||++
T Consensus 145 ------------~~~~vIiDE~H~l 157 (715)
T 2va8_A 145 ------------EVNYFVLDELHYL 157 (715)
T ss_dssp ------------GEEEEEECSGGGG
T ss_pred ------------ccCEEEEechhhc
Confidence 8999999999984
No 45
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.52 E-value=2e-14 Score=157.00 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=33.4
Q ss_pred hCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH
Q 042872 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~ 258 (381)
+|+..|||+|.++|+.++.|+|+|+.+|||+|||++|+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSI 281 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHH
Confidence 67889999999999999999999999999999999997
No 46
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-14 Score=161.35 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=79.9
Q ss_pred hCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhh
Q 042872 221 FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQH 300 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~ 300 (381)
++| .|+|+|.+||++++.|+|+|+++|||+|||++|+--+.... ..|.+++++... ..-..++.+.+++
T Consensus 181 ~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~Pt--raLa~Q~~~~l~~------- 249 (1108)
T 3l9o_A 181 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPI--KALSNQKYRELLA------- 249 (1108)
T ss_dssp CSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESS--HHHHHHHHHHHHH-------
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCc--HHHHHHHHHHHHH-------
Confidence 444 69999999999999999999999999999999973332222 346677777653 2222233333331
Q ss_pred hhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecccc
Q 042872 301 YFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380 (381)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHc 380 (381)
.+. ...+-......++.++|||+|||+|.+ +..++...+. ++.+|||||||+
T Consensus 250 -~~~--~VglltGd~~~~~~~~IlV~Tpe~L~~----------~L~~~~~~l~---------------~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 250 -EFG--DVGLMTGDITINPDAGCLVMTTEILRS----------MLYRGSEVMR---------------EVAWVIFDEVHY 301 (1108)
T ss_dssp -HTS--SEEEECSSCBCCCSCSEEEEEHHHHHH----------HHHHCSSHHH---------------HEEEEEEETGGG
T ss_pred -HhC--CccEEeCccccCCCCCEEEeChHHHHH----------HHHcCccccc---------------cCCEEEEhhhhh
Confidence 000 011111233455679999999999962 1122333344 899999999998
Q ss_pred C
Q 042872 381 V 381 (381)
Q Consensus 381 I 381 (381)
+
T Consensus 302 l 302 (1108)
T 3l9o_A 302 M 302 (1108)
T ss_dssp T
T ss_pred c
Confidence 5
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.50 E-value=3.5e-14 Score=154.12 Aligned_cols=115 Identities=18% Similarity=0.136 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH---------------------------HHHHHHH
Q 042872 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------------DQIITLN 265 (381)
Q Consensus 213 l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~---------------------------dQv~~L~ 265 (381)
+..+..+.+|| .|+|+|..+||.++.|+ |+.|+||+|||++|. +++..|.
T Consensus 72 vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 72 VREASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 44456667999 99999999999999999 999999999999998 4456666
Q ss_pred hhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHH
Q 042872 266 LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLH 345 (381)
Q Consensus 266 ~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~ 345 (381)
..+|+++.++.|+++...+... . .++|+|+||++|. ...|....
T Consensus 149 ~~lgl~v~~i~gg~~~~~r~~~--~-----------------------------~~dIv~gTpgrlg-----fD~L~D~m 192 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDEKREA--Y-----------------------------AADITYSTNNELG-----FDYLRDNM 192 (844)
T ss_dssp HHTTCCEEECCTTSCHHHHHHH--H-----------------------------HSSEEEEEHHHHH-----HHHHHHTT
T ss_pred hhcCCeEEEEeCCCCHHHHHHh--c-----------------------------CCCEEEECchhhh-----HHHHHHhh
Confidence 6678998888888876543221 1 4799999999993 01222111
Q ss_pred --hcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 346 --RKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 346 --~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
..+.+. ++.+.++||||||.|
T Consensus 193 ~~~~~~l~---------------lr~~~~lVlDEaD~m 215 (844)
T 1tf5_A 193 VLYKEQMV---------------QRPLHFAVIDEVDSI 215 (844)
T ss_dssp CSSGGGCC---------------CCCCCEEEEETHHHH
T ss_pred hcchhhhc---------------ccCCCEEEECchhhh
Confidence 011122 238999999999964
No 48
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.50 E-value=1.4e-14 Score=159.64 Aligned_cols=126 Identities=16% Similarity=0.229 Sum_probs=82.1
Q ss_pred HHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhh
Q 042872 219 VIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLS 298 (381)
Q Consensus 219 ~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~ 298 (381)
..|+|+ ++|+|.++|+.++.|+|+|+++|||+|||+||+-.+..+. ..+.+++++....... .++.+.+++-
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlvl~PtraLa--~Q~~~~l~~~---- 105 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIYTSPIKALS--NQKFRDFKET---- 105 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEEEESCGGGH--HHHHHHHHTT----
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEEEeCCHHHH--HHHHHHHHHH----
Confidence 347885 8999999999999999999999999999999875554443 3466777776643322 2233333310
Q ss_pred hhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecc
Q 042872 299 QHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEA 378 (381)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEA 378 (381)
+.......-......++.++|+|+|||+|.+ . + .++...+. ++.+||||||
T Consensus 106 ----~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~------~---l-~~~~~~l~---------------~l~lvViDEa 156 (997)
T 4a4z_A 106 ----FDDVNIGLITGDVQINPDANCLIMTTEILRS------M---L-YRGADLIR---------------DVEFVIFDEV 156 (997)
T ss_dssp ----C--CCEEEECSSCEECTTSSEEEEEHHHHHH------H---H-HHTCSGGG---------------GEEEEEECCT
T ss_pred ----cCCCeEEEEeCCCccCCCCCEEEECHHHHHH------H---H-HhCchhhc---------------CCCEEEEECc
Confidence 0000011111122344568999999999962 1 1 12323333 8999999999
Q ss_pred ccC
Q 042872 379 HCV 381 (381)
Q Consensus 379 HcI 381 (381)
||+
T Consensus 157 H~l 159 (997)
T 4a4z_A 157 HYV 159 (997)
T ss_dssp TCC
T ss_pred ccc
Confidence 996
No 49
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.49 E-value=1.2e-13 Score=132.26 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=39.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.+||+|.++++.++.+ ++|+.+|||+|||++|+--+..+....+-+++++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 6899999999999999 999999999999999973322222123556666654
No 50
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.43 E-value=8.6e-14 Score=153.65 Aligned_cols=123 Identities=19% Similarity=0.190 Sum_probs=79.5
Q ss_pred HhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhh
Q 042872 220 IFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQ 299 (381)
Q Consensus 220 ~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~ 299 (381)
.|+|+ |+|+|.+||++++.|+++|+++|||+|||++|.--+.... ..|.+++++... ..-..++.+.++.
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~Pt--kaLa~Q~~~~l~~------ 151 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPI--KALSNQKYRELLA------ 151 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESS--HHHHHHHHHHHHH------
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECCh--HHHHHHHHHHHHH------
Confidence 37886 9999999999999999999999999999999963222221 346677777753 2222233333331
Q ss_pred hhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEeccc
Q 042872 300 HYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379 (381)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAH 379 (381)
.+. .+ .+-......++.++|+|+|||+|.+ . + .++...+. ++.+|||||||
T Consensus 152 --~~~-~v-glltGd~~~~~~~~IvV~Tpe~L~~------~---L-~~~~~~l~---------------~l~lVViDEaH 202 (1010)
T 2xgj_A 152 --EFG-DV-GLMTGDITINPDAGCLVMTTEILRS------M---L-YRGSEVMR---------------EVAWVIFDEVH 202 (1010)
T ss_dssp --HHS-CE-EEECSSCEECTTCSEEEEEHHHHHH------H---H-HHTCTTGG---------------GEEEEEEETGG
T ss_pred --HhC-CE-EEEeCCCccCCCCCEEEEcHHHHHH------H---H-HcCcchhh---------------cCCEEEEechh
Confidence 000 00 1111122334568999999999862 1 1 22333344 89999999999
Q ss_pred cC
Q 042872 380 CV 381 (381)
Q Consensus 380 cI 381 (381)
++
T Consensus 203 ~l 204 (1010)
T 2xgj_A 203 YM 204 (1010)
T ss_dssp GG
T ss_pred hh
Confidence 85
No 51
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.42 E-value=3.8e-14 Score=143.82 Aligned_cols=131 Identities=12% Similarity=0.195 Sum_probs=75.1
Q ss_pred hCCCCCcHHHHHHHHHHHcC--CCEEEECCCCCCchhhHHHHHHH-HHhh-cCCcEEEEeCCCCHHHHHHHHHHHHhchh
Q 042872 221 FGNRAFRPLQHQACKASVAK--QDCFVLLPTGGGKSLCYQDQIIT-LNLK-FGIPATFLNSQQTVSQAAAVLQELRQGLV 296 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~G--rDvLviaPTGsGKTLaF~dQv~~-L~~~-~gI~a~~l~g~~~~~e~~~il~~lr~g~~ 296 (381)
.||..|+|+|.+||+.++.| +++|+.+|||+|||++|+-.+.. +... .+.+++++... ..-..++.+.+++-
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~--~~L~~Q~~~~~~~~-- 212 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS--RELARQIMDVVTEM-- 212 (508)
T ss_dssp --CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSC--HHHHHHHHHHHHHH--
T ss_pred ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc--HHHHHHHHHHHHHh--
Confidence 69999999999999999998 99999999999999999733322 2211 23467777653 22222233333210
Q ss_pred hhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEe
Q 042872 297 LSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVD 376 (381)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVID 376 (381)
..... ..................++|+|+||++|.. . + .++.+.+. ++.+||||
T Consensus 213 ~~~~~-~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~------~---l-~~~~~~~~---------------~~~lIIiD 266 (508)
T 3fho_A 213 GKYTE-VKTAFGIKDSVPKGAKIDAQIVIGTPGTVMD------L---M-KRRQLDAR---------------DIKVFVLD 266 (508)
T ss_dssp STTSS-CCEEC----------CCCCSEEEECHHHHHH------H---H-HTTCSCCT---------------TCCEEEEC
T ss_pred CCccC-eeEEEEeCCcccccccCCCCEEEECHHHHHH------H---H-HcCCcccc---------------CCCEEEEe
Confidence 00000 0000000000111222368999999999862 1 1 22333333 89999999
Q ss_pred ccccC
Q 042872 377 EAHCV 381 (381)
Q Consensus 377 EAHcI 381 (381)
|||++
T Consensus 267 EaH~~ 271 (508)
T 3fho_A 267 EADNM 271 (508)
T ss_dssp CHHHH
T ss_pred chhhh
Confidence 99973
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.40 E-value=2.9e-13 Score=147.60 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH---------------------------HHHHHHH
Q 042872 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------------DQIITLN 265 (381)
Q Consensus 213 l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~---------------------------dQv~~L~ 265 (381)
+..+..+.+|+ .|+|+|..+|+.++.|+ |+.|+||+|||++|. +++..+.
T Consensus 100 vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 100 AREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 44466678999 89999999999999999 999999999999997 4456666
Q ss_pred hhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHH
Q 042872 266 LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLH 345 (381)
Q Consensus 266 ~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~ 345 (381)
..+|+++.++.|+++...+.... .++|+|+||++|. ...|....
T Consensus 177 ~~lGLsv~~i~gg~~~~~r~~~y-------------------------------~~DIvygTpgrlg-----fDyLrD~m 220 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDERRVAY-------------------------------NADITYGTNNEFG-----FDYLRDNM 220 (922)
T ss_dssp HHTTCCEEECCTTCCHHHHHHHH-------------------------------HSSEEEEEHHHHH-----HHHHHHTT
T ss_pred hhcCCeEEEEeCCCCHHHHHHhc-------------------------------CCCEEEECchHhh-----HHHHHhhh
Confidence 67889999988888765432111 3799999999993 01222211
Q ss_pred --hcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 346 --RKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 346 --~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
..+.+ .++.+.++||||||.|
T Consensus 221 ~~~~~~l---------------~lr~l~~lIVDEaDsm 243 (922)
T 1nkt_A 221 AHSLDDL---------------VQRGHHYAIVDEVDSI 243 (922)
T ss_dssp CSSGGGC---------------CCCCCCEEEETTHHHH
T ss_pred hccHhhh---------------ccCCCCEEEEeChHHH
Confidence 01112 2338999999999964
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.40 E-value=3.8e-13 Score=146.02 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH---------------------------HHHHHHH
Q 042872 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------------DQIITLN 265 (381)
Q Consensus 213 l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~---------------------------dQv~~L~ 265 (381)
+..+..+.+|. .|+|+|..+++.++.|+ ++.|+||+|||++|. +.+..+.
T Consensus 63 vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 63 VREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 44556677897 79999999999999999 999999999999997 3456666
Q ss_pred hhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECcccc-ccCcchHHHHHHH
Q 042872 266 LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERI-VGNQSFSEVLKCL 344 (381)
Q Consensus 266 ~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL-~~~~~f~~~L~~L 344 (381)
..+|+++.+++|+++...+. +.. .++|+|+||++| + ..|+.-
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~-----~~~--------------------------~~dIvvgTpgrl~f------DyLrd~ 182 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKR-----EAY--------------------------AADITYGTNNEYGF------DYLRDN 182 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHH-----HHH--------------------------HSSEEEEEHHHHHH------HHHHHT
T ss_pred HhcCCeEEEEeCCCCHHHHH-----Hhc--------------------------CCCEEEECCchhhH------HHHHhh
Confidence 67789999999888764321 111 379999999998 3 122211
Q ss_pred H--hcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 345 H--RKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 345 ~--~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
. ..+.+ .++.+.++||||||.+
T Consensus 183 ~~~~~~~~---------------~~~~l~~lVlDEaD~m 206 (853)
T 2fsf_A 183 MAFSPEER---------------VQRKLHYALVDEVDSI 206 (853)
T ss_dssp TCSSGGGC---------------CCCSCCEEEESCHHHH
T ss_pred hhccHhHh---------------cccCCcEEEECchHHH
Confidence 1 01111 2338999999999953
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.36 E-value=6.5e-13 Score=153.51 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=41.8
Q ss_pred hCCCCCcHHHHHHHHHHHcC-CCEEEECCCCCCchhhHHH-HHHHHHhhcCCcEEEEeC
Q 042872 221 FGNRAFRPLQHQACKASVAK-QDCFVLLPTGGGKSLCYQD-QIITLNLKFGIPATFLNS 277 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~G-rDvLviaPTGsGKTLaF~d-Qv~~L~~~~gI~a~~l~g 277 (381)
.+|+.|+|+|.+|++.++.+ +++++.||||||||++|.- -+..|...-+.+++++.+
T Consensus 922 ~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P 980 (1724)
T 4f92_B 922 DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITP 980 (1724)
T ss_dssp TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 47899999999999999865 6899999999999999961 122333222445555543
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.35 E-value=2.5e-12 Score=143.64 Aligned_cols=109 Identities=21% Similarity=0.247 Sum_probs=81.7
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHc----CC--CEEEECCCCCCchhhHH-----------------------HH-HHHHHh
Q 042872 217 NVVIFGNRAFRPLQHQACKASVA----KQ--DCFVLLPTGGGKSLCYQ-----------------------DQ-IITLNL 266 (381)
Q Consensus 217 ~~~~fG~~~fRpiQ~eAI~aiL~----Gr--DvLviaPTGsGKTLaF~-----------------------dQ-v~~L~~ 266 (381)
+...|||+ +||+|.+||+.++. |+ |+|+++|||+|||++|+ .| ...+..
T Consensus 596 ~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 596 FCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp HHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHH
Confidence 44568886 69999999999997 66 99999999999998875 22 333332
Q ss_pred ---hcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHH
Q 042872 267 ---KFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKC 343 (381)
Q Consensus 267 ---~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~ 343 (381)
.+++++..+++..+..++...++.+..| .++|||+||+.+..
T Consensus 675 ~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g-------------------------~~dIvV~T~~ll~~---------- 719 (1151)
T 2eyq_A 675 RFANWPVRIEMISRFRSAKEQTQILAEVAEG-------------------------KIDILIGTHKLLQS---------- 719 (1151)
T ss_dssp HSTTTTCCEEEESTTSCHHHHHHHHHHHHTT-------------------------CCSEEEECTHHHHS----------
T ss_pred HhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC-------------------------CCCEEEECHHHHhC----------
Confidence 2357777777777777777777776644 68999999987642
Q ss_pred HHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 344 LHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 344 L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
.+.++ ++++|||||||++
T Consensus 720 -----~~~~~---------------~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 720 -----DVKFK---------------DLGLLIVDEEHRF 737 (1151)
T ss_dssp -----CCCCS---------------SEEEEEEESGGGS
T ss_pred -----Ccccc---------------ccceEEEechHhc
Confidence 12222 8999999999983
No 56
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.34 E-value=3.5e-12 Score=119.10 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=72.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhh
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLH 304 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~ 304 (381)
++||+|.++++.++.+++.++.+|||+|||++|+--+..+....+.+++++... ..-..+..+.+++ +... ..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt--~~L~~q~~~~l~~--~~~~---~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPT--TALTTQMADDFVD--YRLF---SH 185 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSS--HHHHHHHHHHHHH--HTSC---CG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECC--HHHHHHHHHHHHH--hccc---cc
Confidence 689999999999999999999999999999999733333222223467777543 2222223333321 0000 00
Q ss_pred hhhhhhhhcccCC----CCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecccc
Q 042872 305 QLIFVLTCASRKD----KPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380 (381)
Q Consensus 305 ~~~~~~~~~~~~~----~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHc 380 (381)
..+..+. .+... ....+|+|+||+++..... ..+. ++.+|||||||+
T Consensus 186 ~~~~~~~-~~~~~~~~~~~~~~I~v~T~~~l~~~~~-------------~~~~---------------~~~~vIiDEaH~ 236 (282)
T 1rif_A 186 AMIKKIG-GGASKDDKYKNDAPVVVGTWQTVVKQPK-------------EWFS---------------QFGMMMNDECHL 236 (282)
T ss_dssp GGEEECS-TTCSSTTCCCTTCSEEEECHHHHTTSCG-------------GGGG---------------GEEEEEEETGGG
T ss_pred ceEEEEe-CCCcchhhhccCCcEEEEchHHHHhhHH-------------HHHh---------------hCCEEEEECCcc
Confidence 0000000 01111 1568999999999874211 0111 789999999998
Q ss_pred C
Q 042872 381 V 381 (381)
Q Consensus 381 I 381 (381)
+
T Consensus 237 ~ 237 (282)
T 1rif_A 237 A 237 (282)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.33 E-value=8.5e-13 Score=152.54 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=34.8
Q ss_pred CCCCCcHHHHHHHHHHHc-CCCEEEECCCCCCchhhHH
Q 042872 222 GNRAFRPLQHQACKASVA-KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 222 G~~~fRpiQ~eAI~aiL~-GrDvLviaPTGsGKTLaF~ 258 (381)
||++|+++|.+++|.++. ++|+|++||||+|||++|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~ 113 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 113 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHH
Confidence 899999999999999985 6899999999999999986
No 58
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.32 E-value=3.4e-12 Score=139.54 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH---------------------------HHHHHHH
Q 042872 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------------DQIITLN 265 (381)
Q Consensus 213 l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~---------------------------dQv~~L~ 265 (381)
+..+..+.+|+ .|+|+|..+|+.++.|+ ++.|+||+|||++|. +.+..|.
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 55577778999 89999999999999999 999999999999997 3456666
Q ss_pred hhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECcccc
Q 042872 266 LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERI 331 (381)
Q Consensus 266 ~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL 331 (381)
..+|+++.+++|+++...+.... .++|+|+||++|
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~ay-------------------------------~~DIvyGTpgrl 179 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRKAY-------------------------------LADVTYVTNSEL 179 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHHHH-------------------------------TSSEEEEEHHHH
T ss_pred HhcCCeEEEEeCCCCHHHHHHHc-------------------------------CCCEEEECchhh
Confidence 67799999999888754432211 479999999999
No 59
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.29 E-value=2e-12 Score=128.18 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhh
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLH 304 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~ 304 (381)
.+||+|.+||+.++.++++++.+|||+|||++|+--+.. .+.+++++... ..-..+..+.+++ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~----~~~~~Lvl~P~--~~L~~Q~~~~~~~---------~~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE----LSTPTLIVVPT--LALAEQWKERLGI---------FG 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHH----HCSCEEEEESS--HHHHHHHHHHGGG---------GC
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHH----cCCCEEEEECC--HHHHHHHHHHHHh---------CC
Confidence 689999999999999999999999999999999633322 36788888764 2222223333331 00
Q ss_pred hhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 305 QLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
+.......+......+|+|+||+++... +..+ . .++.+|||||||++
T Consensus 158 --~~~v~~~~g~~~~~~~Ivv~T~~~l~~~------~~~~--~--------------------~~~~liIvDEaH~~ 204 (472)
T 2fwr_A 158 --EEYVGEFSGRIKELKPLTVSTYDSAYVN------AEKL--G--------------------NRFMLLIFDEVHHL 204 (472)
T ss_dssp --GGGEEEBSSSCBCCCSEEEEEHHHHHHT------HHHH--T--------------------TTCSEEEEETGGGT
T ss_pred --CcceEEECCCcCCcCCEEEEEcHHHHHH------HHHh--c--------------------CCCCEEEEECCcCC
Confidence 0001112233334578999999998631 1111 0 16899999999985
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.27 E-value=1.2e-11 Score=123.65 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhh
Q 042872 224 RAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFL 303 (381)
Q Consensus 224 ~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~ 303 (381)
..+||+|.+||+.++.++++++.+|||+|||++|+--+..+....+-+++++..... -..+..+.+++ +. .+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~--L~~Q~~~~~~~--~~---~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTA--LTTQMADDFVD--YR---LFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHH--HHHHHHHHHHH--TT---SSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHH--HHHHHHHHHHH--hh---cCC
Confidence 379999999999999999999999999999999973333322223347777776422 22223333321 00 000
Q ss_pred hhhhhhhhhcccCC----CCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEeccc
Q 042872 304 HQLIFVLTCASRKD----KPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379 (381)
Q Consensus 304 ~~~~~~~~~~~~~~----~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAH 379 (381)
...+..+ ..+... .+..+|+|+||+.|..... ..++ ++.+|||||||
T Consensus 185 ~~~v~~~-~~~~~~~~~~~~~~~I~i~T~~~l~~~~~-------------~~~~---------------~~~liIiDE~H 235 (510)
T 2oca_A 185 HAMIKKI-GGGASKDDKYKNDAPVVVGTWQTVVKQPK-------------EWFS---------------QFGMMMNDECH 235 (510)
T ss_dssp GGGEEEC-GGGCCTTGGGCTTCSEEEEEHHHHTTSCG-------------GGGG---------------GEEEEEEETGG
T ss_pred ccceEEE-ecCCccccccccCCcEEEEeHHHHhhchh-------------hhhh---------------cCCEEEEECCc
Confidence 0000000 011111 1578999999999874211 1111 78999999999
Q ss_pred cC
Q 042872 380 CV 381 (381)
Q Consensus 380 cI 381 (381)
++
T Consensus 236 ~~ 237 (510)
T 2oca_A 236 LA 237 (510)
T ss_dssp GC
T ss_pred CC
Confidence 85
No 61
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=113.21 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHH-HHHHh---hcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhh
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQI-ITLNL---KFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQH 300 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv-~~L~~---~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~ 300 (381)
.++++|.++|+.+..|+++++++|||+|||.+|.-.+ ..+.. ..++.++++.. ......++.+.+.... .
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p--~~~la~q~~~~~~~~~----~ 134 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQP--RRISAVSVAERVAFER----G 134 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEES--SHHHHHHHHHHHHHTT----T
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEecc--chHHHHHHHHHHHHHh----c
Confidence 4678999999999999999999999999998775221 11111 11345555544 3333333333332110 0
Q ss_pred hhhhhhhhh-hhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEeccc
Q 042872 301 YFLHQLIFV-LTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379 (381)
Q Consensus 301 ~~~~~~~~~-~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAH 379 (381)
......+.. .........+..+|+|+||++|.. .+.. .++ ++++|||||||
T Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~------~l~~-------~l~---------------~~~~lVlDEah 186 (235)
T 3llm_A 135 EEPGKSCGYSVRFESILPRPHASIMFCTVGVLLR------KLEA-------GIR---------------GISHVIVDEIH 186 (235)
T ss_dssp CCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHH------HHHH-------CCT---------------TCCEEEECCTT
T ss_pred cccCceEEEeechhhccCCCCCeEEEECHHHHHH------HHHh-------hhc---------------CCcEEEEECCc
Confidence 000000000 000111223568899999999972 1211 123 89999999999
Q ss_pred c
Q 042872 380 C 380 (381)
Q Consensus 380 c 380 (381)
.
T Consensus 187 ~ 187 (235)
T 3llm_A 187 E 187 (235)
T ss_dssp S
T ss_pred c
Confidence 6
No 62
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.25 E-value=1.1e-11 Score=114.53 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhh
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLH 304 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~ 304 (381)
.+||+|.+++..++.++++++++|||+|||++++--+. ..+-+++++... ..-..+..+.++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~----~~~~~~liv~P~--~~L~~q~~~~~~~---------~~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN----ELSTPTLIVVPT--LALAEQWKERLGI---------FG 157 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH----HSCSCEEEEESS--HHHHHHHHHHHGG---------GC
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHH----HcCCCEEEEeCC--HHHHHHHHHHHHh---------CC
Confidence 68999999999999999999999999999999863222 246677777653 2222223333321 00
Q ss_pred hhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 305 QLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
+.......+......+|+|+||+++... +..+ .. ++.+|||||||++
T Consensus 158 --~~~v~~~~g~~~~~~~i~v~T~~~l~~~------~~~~--~~--------------------~~~llIiDEaH~l 204 (237)
T 2fz4_A 158 --EEYVGEFSGRIKELKPLTVSTYDSAYVN------AEKL--GN--------------------RFMLLIFDEVHHL 204 (237)
T ss_dssp --GGGEEEESSSCBCCCSEEEEEHHHHHHT------HHHH--TT--------------------TCSEEEEECSSCC
T ss_pred --CCeEEEEeCCCCCcCCEEEEeHHHHHhh------HHHh--cc--------------------cCCEEEEECCccC
Confidence 0001112223334678999999998631 1111 11 6899999999985
No 63
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.16 E-value=1.7e-11 Score=123.04 Aligned_cols=119 Identities=20% Similarity=0.120 Sum_probs=74.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEECCCCCCchhhHHHHH-HHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhh
Q 042872 222 GNRAFRPLQHQACKASVAKQDC-FVLLPTGGGKSLCYQDQI-ITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQ 299 (381)
Q Consensus 222 G~~~fRpiQ~eAI~aiL~GrDv-LviaPTGsGKTLaF~dQv-~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~ 299 (381)
|+..++|+|+ +||.++.|+|+ ++.+|||+|||++|+-.+ ..+. ..+.+++++... ..-..++.+.++ |.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~-~~~~~~lvl~Pt--r~La~Q~~~~l~-g~---- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-LRRLRTLILAPT--RVVAAEMEEALR-GL---- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH-HTTCCEEEEESS--HHHHHHHHHHTT-TS----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH-hcCCcEEEECCC--HHHHHHHHHHhc-Cc----
Confidence 7888999985 89999999988 888999999999987443 3333 357788888753 332222333321 10
Q ss_pred hhhhhhhhhhhhh-cccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecc
Q 042872 300 HYFLHQLIFVLTC-ASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEA 378 (381)
Q Consensus 300 ~~~~~~~~~~~~~-~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEA 378 (381)
.+..... ......+...|.++||+.+.. .+... ..+. ++++||||||
T Consensus 72 ------~v~~~~~~~~~~~~~~~~i~~~t~~~l~~---------~l~~~--~~l~---------------~~~~iViDEa 119 (451)
T 2jlq_A 72 ------PIRYQTPAVKSDHTGREIVDLMCHATFTT---------RLLSS--TRVP---------------NYNLIVMDEA 119 (451)
T ss_dssp ------CEEECCTTCSCCCCSSCCEEEEEHHHHHH---------HHHHC--SCCC---------------CCSEEEEETT
T ss_pred ------eeeeeeccccccCCCCceEEEEChHHHHH---------HhhCc--cccc---------------CCCEEEEeCC
Confidence 0000000 111234456788999988751 12111 1223 8999999999
Q ss_pred ccC
Q 042872 379 HCV 381 (381)
Q Consensus 379 HcI 381 (381)
|++
T Consensus 120 h~~ 122 (451)
T 2jlq_A 120 HFT 122 (451)
T ss_dssp TCC
T ss_pred ccC
Confidence 984
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.05 E-value=9.7e-11 Score=120.07 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=66.2
Q ss_pred CCcHHHHHHHHHHHc----C-CCEEEECCCCCCchhhHHHHHHHHHhh--------cCCcEEEEeCCCCHHHHHHHH-HH
Q 042872 225 AFRPLQHQACKASVA----K-QDCFVLLPTGGGKSLCYQDQIITLNLK--------FGIPATFLNSQQTVSQAAAVL-QE 290 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~----G-rDvLviaPTGsGKTLaF~dQv~~L~~~--------~gI~a~~l~g~~~~~e~~~il-~~ 290 (381)
.+||+|.+||+.++. | +++++++|||+|||++++.-+..+... .+-+++++........| .. +.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q--~~~~~ 255 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDD--PKDKT 255 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-------------C
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHH--HHHHH
Confidence 699999999999986 5 569999999999999986444444322 34677777764322111 11 11
Q ss_pred HHhchhhhhhhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCc
Q 042872 291 LRQGLVLSQHYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQL 370 (381)
Q Consensus 291 lr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L 370 (381)
++ .+ ...+ ............+|+|+||++|..... .-.....+.. ..+
T Consensus 256 ~~--------~~-~~~~--~~~~~~~~~~~~~I~v~T~~~l~~~~~------~~~~~~~~~~---------------~~~ 303 (590)
T 3h1t_A 256 FT--------PF-GDAR--HKIEGGKVVKSREIYFAIYQSIASDER------RPGLYKEFPQ---------------DFF 303 (590)
T ss_dssp CT--------TT-CSSE--EECCC--CCSSCSEEEEEGGGC------------CCGGGGSCT---------------TSC
T ss_pred HH--------hc-chhh--hhhhccCCCCCCcEEEEEhhhhccccc------cccccccCCC---------------Ccc
Confidence 10 00 0000 001123344578999999999973200 0000011111 178
Q ss_pred cEEEEeccccC
Q 042872 371 AGFVVDEAHCV 381 (381)
Q Consensus 371 ~~lVIDEAHcI 381 (381)
.+|||||||++
T Consensus 304 ~lvIiDEaH~~ 314 (590)
T 3h1t_A 304 DLIIIDECHRG 314 (590)
T ss_dssp SEEEESCCC--
T ss_pred CEEEEECCccc
Confidence 99999999985
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.04 E-value=6.7e-11 Score=125.67 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=40.0
Q ss_pred CCcHHHH-----HHHHHHH------cCCCEEEECCCCCCchhhHHHHH-HHHHhhcCCcEEEEeC
Q 042872 225 AFRPLQH-----QACKASV------AKQDCFVLLPTGGGKSLCYQDQI-ITLNLKFGIPATFLNS 277 (381)
Q Consensus 225 ~fRpiQ~-----eAI~aiL------~GrDvLviaPTGsGKTLaF~dQv-~~L~~~~gI~a~~l~g 277 (381)
.|+|+|. ++|+.++ .|+|+|+++|||+|||++|+-.+ ..+. ..+.+++++..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~-~~~~~~lilaP 278 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLAP 278 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEES
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEcc
Confidence 8899999 9999998 89999999999999999997333 3333 35678888875
No 66
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.98 E-value=3e-10 Score=119.41 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=44.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeC
Q 042872 223 NRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNS 277 (381)
Q Consensus 223 ~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g 277 (381)
...++|+|+.+|+.+++|+|+|+.+|||+|||++|+-+ +..+. ..+.+++++..
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~-~~~~~vLvl~P 223 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-KRRLRTLILAP 223 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEES
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEcC
Confidence 47788998889999999999999999999999999633 33443 35778888875
No 67
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.96 E-value=4.3e-11 Score=127.44 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhhhhhhhhh
Q 042872 226 FRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQGLVLSQHYFLHQ 305 (381)
Q Consensus 226 fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~~~~~~~ 305 (381)
++++|.++++.+..++|+++++|||+|||++|.- .+. ..+.+++++..- +.-..++.+.+.. .+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l---~ll-~~g~~vLVl~PT--ReLA~Qia~~l~~--------~~g~ 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPA---AYA-AQGYKVLVLNPS--VAATLGFGAYMSK--------AHGI 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHH---HHH-HTTCCEEEEESC--HHHHHHHHHHHHH--------HHSC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHH---HHH-HCCCeEEEEcch--HHHHHHHHHHHHH--------HhCC
Confidence 3455666666666889999999999999999962 222 246678888763 3222222222210 0000
Q ss_pred hhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEeccccC
Q 042872 306 LIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHCV 381 (381)
Q Consensus 306 ~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHcI 381 (381)
. ..............+|+|+|||+|+. ++.+.++ ++++|||||||++
T Consensus 284 ~-vg~~vG~~~~~~~~~IlV~TPGrLl~-------------~~~l~l~---------------~l~~lVlDEAH~l 330 (666)
T 3o8b_A 284 D-PNIRTGVRTITTGAPVTYSTYGKFLA-------------DGGCSGG---------------AYDIIICDECHST 330 (666)
T ss_dssp C-CEEECSSCEECCCCSEEEEEHHHHHH-------------TTSCCTT---------------SCSEEEETTTTCC
T ss_pred C-eeEEECcEeccCCCCEEEECcHHHHh-------------CCCcccC---------------cccEEEEccchhc
Confidence 0 01111122234578999999999852 2233333 8999999999985
No 68
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.94 E-value=1e-09 Score=112.83 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=31.4
Q ss_pred CCCCCcHHHHHHHHHH----HcCCCEEEECCCCCCchhhHH
Q 042872 222 GNRAFRPLQHQACKAS----VAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 222 G~~~fRpiQ~eAI~ai----L~GrDvLviaPTGsGKTLaF~ 258 (381)
|| +|||.|.+.+.++ ..|+|+++.||||+|||++|+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l 40 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSL 40 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHH
Confidence 45 6999999977754 578999999999999999997
No 69
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.94 E-value=4.7e-10 Score=115.38 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.8
Q ss_pred hCCCCCcHHHHHHHHH----HHcCCCEEEECCCCCCchhhHH
Q 042872 221 FGNRAFRPLQHQACKA----SVAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~a----iL~GrDvLviaPTGsGKTLaF~ 258 (381)
.|| .|||+|.+++.+ +..|+++++.||||+|||++|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l 44 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVE 44 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHH
Confidence 678 899999998654 4578999999999999999998
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.88 E-value=3.3e-09 Score=105.82 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEECCCCCCchhhHHHHHHHHHhh-cCCcEEEEeCCCCHHHHHHHHHHHHhchhhhh
Q 042872 225 AFRPLQHQACKASV----AKQDCFVLLPTGGGKSLCYQDQIITLNLK-FGIPATFLNSQQTVSQAAAVLQELRQGLVLSQ 299 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL----~GrDvLviaPTGsGKTLaF~dQv~~L~~~-~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~~ 299 (381)
.+||+|.+++..++ .|+++|+..+||+|||++++--+..+... ..-+++++....-..++...++..-.+. .
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~---~ 113 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHL---R 113 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCTTS---C
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCCCc---e
Confidence 69999999998764 57899999999999999876444444321 2357778877555555544444321000 0
Q ss_pred hhhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEeccc
Q 042872 300 HYFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAH 379 (381)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAH 379 (381)
....+. .........++|+|+||+++..... +. .. ...+|||||||
T Consensus 114 v~~~~g------~~~~~~~~~~~ivi~t~~~l~~~~~-------l~-~~--------------------~~~~vIvDEaH 159 (500)
T 1z63_A 114 FAVFHE------DRSKIKLEDYDIILTTYAVLLRDTR-------LK-EV--------------------EWKYIVIDEAQ 159 (500)
T ss_dssp EEECSS------STTSCCGGGSSEEEEEHHHHTTCHH-------HH-TC--------------------CEEEEEEETGG
T ss_pred EEEEec------CchhccccCCcEEEeeHHHHhccch-------hc-CC--------------------CcCEEEEeCcc
Confidence 000000 0011222367899999999974311 11 11 68899999999
Q ss_pred cC
Q 042872 380 CV 381 (381)
Q Consensus 380 cI 381 (381)
++
T Consensus 160 ~~ 161 (500)
T 1z63_A 160 NI 161 (500)
T ss_dssp GG
T ss_pred cc
Confidence 85
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.84 E-value=8.3e-10 Score=121.23 Aligned_cols=129 Identities=14% Similarity=0.033 Sum_probs=77.0
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEECCCCCCchhhHHHHHHHHHhhcCC--cEEEEeCCCCHHHHHHHHHHHHhchhhhhh
Q 042872 225 AFRPLQHQACKASVAK--QDCFVLLPTGGGKSLCYQDQIITLNLKFGI--PATFLNSQQTVSQAAAVLQELRQGLVLSQH 300 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~G--rDvLviaPTGsGKTLaF~dQv~~L~~~~gI--~a~~l~g~~~~~e~~~il~~lr~g~~~~~~ 300 (381)
+++|+|.+++..++.. ..+|+.++||+|||+++.--+..+. ..|- +++++....-..++...+...- | ....
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~-~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~--l~v~ 228 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL-LSGAAERVLIIVPETLQHQWLVEMLRRF-N--LRFA 228 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHH-HTSSCCCEEEECCTTTHHHHHHHHHHHS-C--CCCE
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEeCHHHHHHHHHHHHHHh-C--CCEE
Confidence 5889999999998874 5889999999999999864444433 2333 6777777655544443332210 0 0001
Q ss_pred hhhhhhhhhhhhcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecccc
Q 042872 301 YFLHQLIFVLTCASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380 (381)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHc 380 (381)
.+..................++|+|+|++.+..+......+. .. .+.+|||||||+
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~----~~--------------------~~dlVIvDEAH~ 284 (968)
T 3dmq_A 229 LFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC----EA--------------------EWDLLVVDEAHH 284 (968)
T ss_dssp ECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH----TS--------------------CCCEEEECCSSC
T ss_pred EEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhh----hc--------------------CCCEEEehhhHh
Confidence 111111000001112333467999999999975544332222 11 789999999998
Q ss_pred C
Q 042872 381 V 381 (381)
Q Consensus 381 I 381 (381)
+
T Consensus 285 ~ 285 (968)
T 3dmq_A 285 L 285 (968)
T ss_dssp C
T ss_pred h
Confidence 5
No 72
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.82 E-value=4.8e-09 Score=105.15 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeC
Q 042872 236 ASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNS 277 (381)
Q Consensus 236 aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g 277 (381)
++++|+|+|+++|||||||++|+-. +..+. ..+.+++++..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~~~~~~lil~P 45 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA-RRRLRTLVLAP 45 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEES
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-hcCCeEEEEcc
Confidence 3578999999999999999999633 33333 34678888875
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.74 E-value=1.3e-08 Score=113.19 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHHHc--------------CCCEEEECCCCCCchhhHHHHHHHHHhh-cCCcEEEEeC
Q 042872 225 AFRPLQHQACKASVA--------------KQDCFVLLPTGGGKSLCYQDQIITLNLK-FGIPATFLNS 277 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~--------------GrDvLviaPTGsGKTLaF~dQv~~L~~~-~gI~a~~l~g 277 (381)
.+||+|.+||+.++. ++++++.+|||+|||++++.-+..+... ..-+++++..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvp 338 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVD 338 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 599999999999986 3799999999999999985333322211 1236777765
No 74
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.66 E-value=3.5e-08 Score=99.23 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=31.7
Q ss_pred HHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeC
Q 042872 234 CKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNS 277 (381)
Q Consensus 234 I~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g 277 (381)
...+..|+++++.+|||+|||++|+-. +..+. ..+.+++++..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~P 58 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAP 58 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEEC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEECc
Confidence 444567899999999999999999733 33333 35778888875
No 75
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.63 E-value=5.9e-08 Score=104.46 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=68.5
Q ss_pred hCCCCCcHHHHHHHHHHHcC-CCEEEECCCCCCchhhHHHHHHHH-H--hhcCCcEEEEeCCCCHHHHHHHHHHHHhchh
Q 042872 221 FGNRAFRPLQHQACKASVAK-QDCFVLLPTGGGKSLCYQDQIITL-N--LKFGIPATFLNSQQTVSQAAAVLQELRQGLV 296 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~G-rDvLviaPTGsGKTLaF~dQv~~L-~--~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~ 296 (381)
.| ..|+++|+++|+.++.+ +++++++|||+|||+.. .++... . ...|..++++.. ...-..++.+.+....
T Consensus 90 r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtll-p~ll~~~~~~~~~g~~ilvl~P--~r~La~q~~~~l~~~~- 164 (773)
T 2xau_A 90 RR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQI-PQFVLFDEMPHLENTQVACTQP--RRVAAMSVAQRVAEEM- 164 (773)
T ss_dssp HT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHH-HHHHHHHHCGGGGTCEEEEEES--CHHHHHHHHHHHHHHT-
T ss_pred hh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHhccccCCCceEEecCc--hHHHHHHHHHHHHHHh-
Confidence 45 67889999999999865 67999999999999943 333111 1 111455655543 2222222222221100
Q ss_pred hhhhhhhhhhhhhhhh-cccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEE
Q 042872 297 LSQHYFLHQLIFVLTC-ASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVV 375 (381)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVI 375 (381)
.......+ +... .........+|+|+|||++.. .+... ..+. ++.+|||
T Consensus 165 ---~~~v~~~v-G~~i~~~~~~~~~~~I~v~T~G~l~r---------~l~~~--~~l~---------------~~~~lIl 214 (773)
T 2xau_A 165 ---DVKLGEEV-GYSIRFENKTSNKTILKYMTDGMLLR---------EAMED--HDLS---------------RYSCIIL 214 (773)
T ss_dssp ---TCCBTTTE-EEEETTEEECCTTCSEEEEEHHHHHH---------HHHHS--TTCT---------------TEEEEEE
T ss_pred ---CCchhhee-cceeccccccCCCCCEEEECHHHHHH---------HHhhC--cccc---------------CCCEEEe
Confidence 00000000 0000 011223467899999999862 11111 1222 8999999
Q ss_pred ecccc
Q 042872 376 DEAHC 380 (381)
Q Consensus 376 DEAHc 380 (381)
||||+
T Consensus 215 DEah~ 219 (773)
T 2xau_A 215 DEAHE 219 (773)
T ss_dssp CSGGG
T ss_pred cCccc
Confidence 99995
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1e-07 Score=102.30 Aligned_cols=128 Identities=18% Similarity=0.123 Sum_probs=74.6
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEECCCCCCchhhHHHHHHHHH--hhcCCcEEEEeCCCCHHHHHHHHHHHHhchhhh
Q 042872 225 AFRPLQHQACKASV----AKQDCFVLLPTGGGKSLCYQDQIITLN--LKFGIPATFLNSQQTVSQAAAVLQELRQGLVLS 298 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL----~GrDvLviaPTGsGKTLaF~dQv~~L~--~~~gI~a~~l~g~~~~~e~~~il~~lr~g~~~~ 298 (381)
.+||+|.+++..++ .++.+|+..+||.|||+..+--+..+. ....-+++++.......++...+...--+. .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~--~ 313 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDL--N 313 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTC--C
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCc--e
Confidence 68999999998776 789999999999999987653333221 123456677776655555555554421000 0
Q ss_pred hhhhh-----hhhhhhhh-----hcccCCCCCccEEEECccccccCcchHHHHHHHHhcCCccccccccccccccccccC
Q 042872 299 QHYFL-----HQLIFVLT-----CASRKDKPSCKLLYVTPERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQR 368 (381)
Q Consensus 299 ~~~~~-----~~~~~~~~-----~~~~~~~~~~~IL~aTPErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~ 368 (381)
...+. ...+.... .........++|+|+|++.+..... .+. .-
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~---~l~----~~-------------------- 366 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA---ELG----SI-------------------- 366 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH---HHH----TS--------------------
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH---HHh----cC--------------------
Confidence 00000 00000000 0111344578999999999974211 111 11
Q ss_pred CccEEEEeccccC
Q 042872 369 QLAGFVVDEAHCV 381 (381)
Q Consensus 369 ~L~~lVIDEAHcI 381 (381)
...+|||||||++
T Consensus 367 ~w~~vIvDEaH~l 379 (800)
T 3mwy_W 367 KWQFMAVDEAHRL 379 (800)
T ss_dssp EEEEEEETTGGGG
T ss_pred Ccceeehhhhhhh
Confidence 5789999999975
No 77
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.57 E-value=2.2e-07 Score=92.75 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=28.9
Q ss_pred cCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeCC
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g~ 278 (381)
.|+++|+++|||+|||++|+-. +..+. ..|.+++++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt 40 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPT 40 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcH
Confidence 4789999999999999999633 32333 457788888753
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.57 E-value=7e-08 Score=101.25 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHH---------cCCCEEEECCCCCCchhhHHHHHHHH
Q 042872 225 AFRPLQHQACKASV---------AKQDCFVLLPTGGGKSLCYQDQIITL 264 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL---------~GrDvLviaPTGsGKTLaF~dQv~~L 264 (381)
.+||+|.+++..++ .++.+|+..+||.|||+..+--+..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l 103 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL 103 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHH
Confidence 68999999999875 34679999999999998876334333
No 79
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.53 E-value=1.3e-08 Score=108.46 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHcCCCEEEECCCCCCchhhH
Q 042872 234 CKASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 234 I~aiL~GrDvLviaPTGsGKTLaF 257 (381)
....+.|+++++++|||+|||+..
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYHA 172 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 345578999999999999999854
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.22 E-value=2.5e-06 Score=92.35 Aligned_cols=62 Identities=23% Similarity=0.153 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHH---------------------------HHHHHHH
Q 042872 213 MEFANVVIFGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQ---------------------------DQIITLN 265 (381)
Q Consensus 213 l~~~~~~~fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~---------------------------dQv~~L~ 265 (381)
+..+..+.+|+. ++++|.-....+..|+ |+.|.||.|||++|. +++..+.
T Consensus 64 vREAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 64 VREAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp HHHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHH
Confidence 445677789995 7799999999999998 999999999999986 4566666
Q ss_pred hhcCCcEEEEeC
Q 042872 266 LKFGIPATFLNS 277 (381)
Q Consensus 266 ~~~gI~a~~l~g 277 (381)
..+|+.+.++.+
T Consensus 141 ~~Lglsvg~i~~ 152 (822)
T 3jux_A 141 LFLGLRVGVINS 152 (822)
T ss_dssp HHTTCCEEEEET
T ss_pred HHhCCEEEEEcC
Confidence 677888877776
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.80 E-value=3.7e-05 Score=80.74 Aligned_cols=64 Identities=23% Similarity=0.222 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHH----HHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeCCCCHHHHHHHHHHH
Q 042872 225 AFRPLQHQACKA----SVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNSQQTVSQAAAVLQEL 291 (381)
Q Consensus 225 ~fRpiQ~eAI~a----iL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g~~~~~e~~~il~~l 291 (381)
+|||.|.+.+.+ +..|+++++.||||+|||++|+-- +..+. ..+.++++++. +...+.++.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~-~~~~kvli~t~--T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSS-ERKLKVLYLVR--TNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHH-HHTCEEEEEES--SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhh-hcCCeEEEECC--CHHHHHHHHHHH
Confidence 579999998864 458999999999999999999721 22222 23455655554 333444444443
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.55 E-value=0.00017 Score=75.49 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHcCCCEEEECCCCCCch--hhHHHHHHHHHh---hcCCcEEEEeC
Q 042872 227 RPLQHQACKASVAKQDCFVLLPTGGGKS--LCYQDQIITLNL---KFGIPATFLNS 277 (381)
Q Consensus 227 RpiQ~eAI~aiL~GrDvLviaPTGsGKT--LaF~dQv~~L~~---~~gI~a~~l~g 277 (381)
.+.|++||+.++.++.+++.+|+|+||| ++++ +..|.. ..+.++.++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~l--l~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKL--LAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHH--HHHHHHTCSSCCCCEEEEBS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHH--HHHHHHhhhcCCCeEEEEeC
Confidence 6899999999999999999999999999 5554 333331 23556666543
No 83
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0085 Score=58.40 Aligned_cols=53 Identities=6% Similarity=-0.055 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHH-------cCCCEEEECCCCCCchhhHHHHHHHHHhhc------CCcEEEEeCCC
Q 042872 227 RPLQHQACKASV-------AKQDCFVLLPTGGGKSLCYQDQIITLNLKF------GIPATFLNSQQ 279 (381)
Q Consensus 227 RpiQ~eAI~aiL-------~GrDvLviaPTGsGKTLaF~dQv~~L~~~~------gI~a~~l~g~~ 279 (381)
|.-|.+.|...+ .+..+++.+|+|+|||.+...-+..|.... .+..+.+++..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 444555555433 346899999999999988753444454211 34566677543
No 84
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.54 E-value=0.0056 Score=63.80 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.+++.|++|+..++.++-+++.+|.|+|||.+...-+..+. ..|.++.++..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~-~~g~~Vl~~Ap 240 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAE-SLGLEVGLCAP 240 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEecC
Confidence 57899999999999999999999999999976543344444 45677766543
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.43 E-value=0.0057 Score=61.22 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=39.2
Q ss_pred hCCCCCcHHHHHHHHHHHcC----C-CEEEECCCCCCchhhHHHHHHHHHhhcCC-cEEEEe
Q 042872 221 FGNRAFRPLQHQACKASVAK----Q-DCFVLLPTGGGKSLCYQDQIITLNLKFGI-PATFLN 276 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~G----r-DvLviaPTGsGKTLaF~dQv~~L~~~~gI-~a~~l~ 276 (381)
+.|..+++.|++|+..++.. + .+++.+|.|+|||.+...-+..|. ..+. .+.++.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~-~~~~~~il~~a 81 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALI-STGETGIILAA 81 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCceEEEec
Confidence 56778999999999987643 3 889999999999976543344554 3344 444443
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.21 E-value=0.015 Score=49.98 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHHHHH---------cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 228 PLQHQACKASV---------AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 228 piQ~eAI~aiL---------~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
+.|.+++..+. .|+.+++.+|+|+|||....--...+....|..+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 46777776654 37889999999999997663222233223465555544
No 87
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.04 E-value=0.033 Score=52.28 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhh-----cCCcEEEEeCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLK-----FGIPATFLNSQ 278 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~-----~gI~a~~l~g~ 278 (381)
++.+++.+|+|+|||.....-...+... .+...+.++..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4689999999999997754222223211 15566666643
No 88
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.88 E-value=0.14 Score=42.43 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHc---CCCEEEECCCCCCchhhHH
Q 042872 228 PLQHQACKASVA---KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 228 piQ~eAI~aiL~---GrDvLviaPTGsGKTLaF~ 258 (381)
.-+.+.+-..+. ++.+++.+|+|+|||....
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 334444444442 3579999999999997653
No 89
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.12 Score=43.89 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.6
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
..+++.+|+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999765
No 90
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.59 E-value=0.11 Score=54.12 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHHHHcCCCE-EEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHH
Q 042872 225 AFRPLQHQACKASVAKQDC-FVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQEL 291 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDv-LviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~l 291 (381)
.+.+-|.+||..+|..+++ |+.+|.|+|||.+-..-+..+. ..|-++.++.. +......++.++
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~~~~ILv~a~--TN~AvD~i~erL 253 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-KQGLKVLCCAP--SNIAVDNLVERL 253 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEES--SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEcC--chHHHHHHHHHH
Confidence 4568899999999988875 7789999999977665555555 35666655543 333344445444
No 91
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.39 E-value=0.031 Score=48.70 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=23.3
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.++.+++.+|+|+|||.....-...+. ..+.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~-~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN-ELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 357899999999999976532223333 2345555544
No 92
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.38 E-value=0.081 Score=44.01 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.7
Q ss_pred CCCEEEECCCCCCchhhHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~ 258 (381)
.+.+++.+|+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999997653
No 93
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.37 E-value=0.084 Score=49.73 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=22.9
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhc-CCcEEEEeC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKF-GIPATFLNS 277 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~-gI~a~~l~g 277 (381)
.+++.+|+|+|||.....-...+. .. +..++.++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK-DKTTARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT-TSCCCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh-hhcCeeEEEEeC
Confidence 699999999999977632222232 22 566666664
No 94
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.05 E-value=0.24 Score=50.41 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=26.3
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~ 280 (381)
=+++++++|+|||-+...-...|. ..|.++.++..+.-
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTW 139 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCS
T ss_pred EEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCc
Confidence 467889999999977654444444 45777777766554
No 95
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.21 Score=47.19 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.3
Q ss_pred CCEEEECCCCCCchhhHH
Q 042872 241 QDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~ 258 (381)
+.+++.+|+|+|||....
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 96
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.83 E-value=0.17 Score=46.63 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=15.0
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
..+|+.+|+|+|||.+.
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999775
No 97
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.81 E-value=0.13 Score=49.92 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=24.8
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
.+.+|+.+|+|+|||.+. ..+....+.+.+.++..
T Consensus 148 ~~~vLL~GppGtGKT~la----~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA----KAVAAESNATFFNISAA 182 (389)
T ss_dssp CSEEEEESSTTSCHHHHH----HHHHHHTTCEEEEECSC
T ss_pred CceEEEECCCCCCHHHHH----HHHHHhhcCcEEEeeHH
Confidence 478999999999999775 23344456666666543
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.58 E-value=0.12 Score=44.76 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=23.2
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
+.+++.+|+|+|||....--...+. ..+.++..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA-KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 6899999999999976532223333 3466666554
No 99
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.50 E-value=0.18 Score=45.08 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=23.4
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.+.+++.+|+|+|||.... .+....+.+.+.+.+
T Consensus 39 ~~~vll~G~~GtGKT~la~----~la~~~~~~~~~~~~ 72 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK----AVATEAQVPFLAMAG 72 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH----HHHHHHTCCEEEEET
T ss_pred CceEEEECCCCCCHHHHHH----HHHHHhCCCEEEech
Confidence 4679999999999997652 333345666666554
No 100
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.40 E-value=0.19 Score=47.12 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=23.9
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
++.+++.+|+|+|||....--...+. ..+.+++.++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~-~~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK-KRGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEH
Confidence 36899999999999976532222232 22666666653
No 101
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.35 E-value=0.13 Score=53.66 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 223 NRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 223 ~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
+..+.+.|.+|+..++.+.-+++.+|+|+|||.+...-+..+....+-++.++.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 446789999999999987778999999999998765445455422345555544
No 102
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.16 E-value=0.72 Score=45.86 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=32.4
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVL 288 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il 288 (381)
|.=+++.+++|+|||...+.-+.......|.+++++...++..+....+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 4456888999999995543333333323478899988888876544433
No 103
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.97 E-value=0.74 Score=45.93 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=32.7
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAV 287 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~i 287 (381)
.|.=+++.+++|+|||.....-+..+....|.+++++....+..+....
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHH
Confidence 3456788899999999655433333433357888888888776554433
No 104
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.93 E-value=0.056 Score=46.25 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=13.9
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
-+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999665
No 105
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.82 E-value=0.22 Score=47.00 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=16.0
Q ss_pred CCCEEEECCCCCCchhhHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~ 258 (381)
++.+|+.+|+|+|||....
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999998763
No 106
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.33 Score=52.61 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHH
Q 042872 223 NRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQEL 291 (381)
Q Consensus 223 ~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~l 291 (381)
+..+.+.|.+|+..++.+.-+++.+|.|+|||.+...-+..+....+-++.++.. +......+.+++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~--tn~A~d~l~~rL 424 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP--SNVAVDHLAAKL 424 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES--SHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC--cHHHHHHHHHHH
Confidence 3457799999999999877789999999999977654444444223556655543 333333444444
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.52 E-value=0.11 Score=48.05 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=28.0
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
|.=+++.+|+|+|||...+..+.++. ..|.++.++.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEecc
Confidence 44567789999999987755555555 4578888886554
No 108
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.51 E-value=0.29 Score=44.92 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=23.5
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
++.+++.+|+|+|||... ..+....+.+.+.+++
T Consensus 54 ~~~vll~Gp~GtGKT~la----~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA----RAVATECSATFLNISA 87 (297)
T ss_dssp CSEEEEESSSSSCHHHHH----HHHHHHTTCEEEEEES
T ss_pred CCeEEEECcCCCCHHHHH----HHHHHHhCCCeEEeeH
Confidence 578999999999999775 2333345555555543
No 109
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.37 E-value=0.18 Score=45.95 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=23.1
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.++.+|+.+|+|+|||... ..+....+.+.+.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la----~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA----KAVATETNATFIRVV 83 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH----HHHHHHTTCEEEEEE
T ss_pred CCCeEEEECCCCCcHHHHH----HHHHHHhCCCEEEEe
Confidence 3568999999999999765 333434555555443
No 110
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.25 E-value=0.11 Score=48.45 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhc--CCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKF--GIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~--gI~a~~l~ 276 (381)
++.+++.+|+|+|||.....-...+.... +..++.++
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 56899999999999977532223333222 56666665
No 111
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.11 E-value=0.48 Score=46.46 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHc------CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCH
Q 042872 232 QACKASVA------KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTV 281 (381)
Q Consensus 232 eAI~aiL~------GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~ 281 (381)
..+..+|. |+-+++.+|.|+|||...+.-+..+. ..|-+++++....+.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCCc
Confidence 34666664 45688999999999966543333333 457788888776543
No 112
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.11 E-value=0.29 Score=47.24 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=22.5
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.+.+|+.+|+|+|||.... .+....+.+.+.+.
T Consensus 84 ~~~iLL~GppGtGKT~la~----ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK----AVATEANSTFFSVS 116 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH----HHHHHHTCEEEEEE
T ss_pred CceEEEECCCCCcHHHHHH----HHHHHhCCCEEEee
Confidence 3579999999999997752 33334455555554
No 113
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.92 E-value=0.77 Score=40.29 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.0
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQA 284 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~ 284 (381)
.|.=+++.+|+|+|||.....-+..+. ..+-+++.+....+..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~~~~~~ 66 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEEHPVQV 66 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSSCHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccCCHHHH
Confidence 466789999999999976532233333 457788888877765543
No 114
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.87 E-value=0.42 Score=45.51 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.2
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
+.+|+.+|+|+|||...
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 67999999999999775
No 115
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.85 E-value=0.63 Score=43.48 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
..+++.+|+|+|||.... .+....+.+.+.+++
T Consensus 56 ~~vll~G~~GtGKT~la~----~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN----IISYEMSANIKTTAA 88 (338)
T ss_dssp CCEEEECSTTSSHHHHHH----HHHHHTTCCEEEEEG
T ss_pred CeEEEECcCCCCHHHHHH----HHHHHhCCCeEEecc
Confidence 589999999999998752 333345556555554
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.69 E-value=0.57 Score=47.46 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=26.6
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCH
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTV 281 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~ 281 (381)
=+++++|+|+|||-+...-...+. ..|.++.++..+.-+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVYR 137 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCccc
Confidence 467789999999977653344444 457777777666543
No 117
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.65 E-value=0.55 Score=50.87 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 223 NRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 223 ~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
...+.+.|.+|+..++.+.-+++.+|.|+|||.+...-+..+....+-++.++.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 345789999999999987778999999999998765445555432345555554
No 118
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.63 E-value=1.1 Score=45.18 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=22.6
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
+=+++++|+|+|||-+...-...+. ..|-++.++..+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADT 136 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccc
Confidence 3466779999999966542233333 3355555555443
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.14 E-value=0.42 Score=44.54 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=22.0
Q ss_pred CE-EEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 242 DC-FVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 242 Dv-LviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
.+ |+.+|+|+|||... ..+....+.+...+++..
T Consensus 49 ~~~L~~G~~G~GKT~la----~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA----KALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SEEEECSSTTSSHHHHH----HHHHHHTTEEEEEEETTT
T ss_pred eEEEeeCcCCCCHHHHH----HHHHHHhCCCEEEEcccc
Confidence 45 55566999999775 334445566777776543
No 120
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.07 E-value=0.5 Score=43.23 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.7
Q ss_pred CEEEECCCCCCchhhHH
Q 042872 242 DCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~ 258 (381)
.+++.+|+|+|||....
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997653
No 121
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.91 E-value=1.2 Score=42.34 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=23.5
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
=+++++++|+|||-....-...+. ..|-++.++..+.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADV 136 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCC
Confidence 466789999999976643333333 3466666665553
No 122
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.77 E-value=0.69 Score=48.77 Aligned_cols=64 Identities=30% Similarity=0.285 Sum_probs=40.9
Q ss_pred CCCCCcHHHHHHHHHHHc----C-CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHH
Q 042872 222 GNRAFRPLQHQACKASVA----K-QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 222 G~~~fRpiQ~eAI~aiL~----G-rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr 292 (381)
+| .|++.|.++|..++. | +..++.+.||||||+++..-+..+ +-+++++... .....+....++
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~--~~~A~ql~~el~ 74 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPN--KILAAQLAAEFR 74 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESS--HHHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecC--HHHHHHHHHHHH
Confidence 45 788999999988764 3 246788999999999886333322 3456666543 333333444443
No 123
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.68 E-value=0.94 Score=43.45 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=23.4
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
+=+++++|+|+|||-....-...+. ..|-++.++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~ 142 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADT 142 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEcccc
Confidence 3467889999999966543333333 3455666555544
No 124
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.67 E-value=0.12 Score=46.61 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=13.6
Q ss_pred EEEECCCCCCchhhHH
Q 042872 243 CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 243 vLviaPTGsGKTLaF~ 258 (381)
+++.++.|+|||....
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5789999999998654
No 125
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.63 E-value=0.24 Score=46.49 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=13.4
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+++.+|.|+|||...
T Consensus 41 ~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEESCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999765
No 126
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.62 E-value=1 Score=38.91 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=24.9
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
|.=+++.+|+|+|||... .++.. ..+-+++.+....
T Consensus 20 G~~~~i~G~~GsGKTtl~-~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLA-LQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHH---HHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHH-HHHHH---HcCCcEEEEECCC
Confidence 556788999999999665 33333 3466777777654
No 127
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.50 E-value=0.7 Score=43.85 Aligned_cols=18 Identities=17% Similarity=0.133 Sum_probs=14.2
Q ss_pred CCEEE--ECCCCCCchhhHH
Q 042872 241 QDCFV--LLPTGGGKSLCYQ 258 (381)
Q Consensus 241 rDvLv--iaPTGsGKTLaF~ 258 (381)
+.+++ .+|.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35677 7999999997754
No 128
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.42 E-value=0.68 Score=45.31 Aligned_cols=48 Identities=8% Similarity=-0.021 Sum_probs=33.2
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVL 288 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il 288 (381)
|.=+++.+++|.|||...+.-+..+. ..|.++.++...++..+....+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a-~~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSAL-NDDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHH-HTTCEEEEEESSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCCCHHHHHHHH
Confidence 34467789999999965543333333 3688899999888877655444
No 129
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.35 E-value=1.4 Score=45.29 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=25.6
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
-+++++++|+|||-....-...+. ..|.++.++..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~-~~G~kVllVd~D~ 139 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ-RKGWKTCLICADT 139 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEeccc
Confidence 477889999999977754444454 3477777776644
No 130
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.31 E-value=0.29 Score=45.24 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=22.2
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+.+++.+|+|+|||.... .+....+.+...+++
T Consensus 39 ~~vll~G~~GtGKT~la~----~i~~~~~~~~~~~~~ 71 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH----VIAHELGVNLRVTSG 71 (324)
T ss_dssp CCCEEECCTTCCCHHHHH----HHHHHHTCCEEEECT
T ss_pred CcEEEECCCCCCHHHHHH----HHHHHhCCCEEEEec
Confidence 689999999999997752 222234555555543
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.28 E-value=0.37 Score=45.52 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=22.3
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.+.+|+.+|+|+|||.... .+....+.+.+.++
T Consensus 51 ~~~vLl~GppGtGKT~la~----aia~~~~~~~~~v~ 83 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK----AVATEANSTFFSVS 83 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH----HHHHHHTCEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHH----HHHHHHCCCEEEEc
Confidence 3579999999999997752 33333455555554
No 132
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.22 E-value=0.5 Score=45.01 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHH----cCC--C-EEEECCCCCCchhhHH
Q 042872 227 RPLQHQACKASV----AKQ--D-CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 227 RpiQ~eAI~aiL----~Gr--D-vLviaPTGsGKTLaF~ 258 (381)
.|.|.+++..+. .|+ . +|+.+|.|+|||.+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 466777665554 444 3 7999999999997653
No 133
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.10 E-value=1.6 Score=37.52 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=28.1
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQ 283 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e 283 (381)
.|.-+++++|+|+|||... .++.......+-++..+....+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS-LHFIAKGLRDGDPCIYVTTEESRDS 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH-HHHHHHHHHHTCCEEEEESSSCHHH
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHHHHHHCCCeEEEEEcccCHHH
Confidence 3667888999999999554 2333222234667777776665443
No 134
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.10 E-value=0.98 Score=45.45 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=27.6
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
-+++++++|+|||-+-..-...|....|.++.++..+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 46777999999997765555556532288888887765
No 135
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.06 E-value=0.62 Score=45.89 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHHHHc------CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHH
Q 042872 233 ACKASVA------KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVS 282 (381)
Q Consensus 233 AI~aiL~------GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~ 282 (381)
.+..+|. |+=+++.+|+|+|||...+.-+..+. ..|-+++++....+..
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~-~~g~~vlyi~~E~s~~ 115 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFIDAEHALD 115 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH-HCCCeEEEEECCCChh
Confidence 4555554 45678889999999965533333333 3567888887665543
No 136
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.03 E-value=0.34 Score=45.39 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=23.2
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.++.+++.+|+|+|||... +.+....+.+.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la----~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA----KAIANECQANFISIK 81 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH----HHHHHHTTCEEEEEC
T ss_pred CCceEEEECCCCcCHHHHH----HHHHHHhCCCEEEEE
Confidence 3577999999999999775 233334455555554
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.02 E-value=0.68 Score=40.68 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=26.5
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
.|+=.++.+|.|+|||...+..+..+. ..|.++.++...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeec
Confidence 345567889999999988755555554 346677666544
No 138
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.56 E-value=0.35 Score=46.60 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.+.+|+.+|+|+|||.... .+....+.+.+.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~----aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK----CIASQSGATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH----HHHHHTTCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHH----HHHHHcCCeEEEEeh
Confidence 4689999999999997752 333345666555543
No 139
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.56 E-value=0.39 Score=45.05 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=23.1
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+-+|+.+|+|+|||... ..+...+|.+.+.+..
T Consensus 37 ~~lLl~GppGtGKT~la----~aiA~~l~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC----ELVFRKMGINPIMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHH----HHHHHHHTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHH----HHHHHHhCCCEEEEeH
Confidence 45788899999999765 3344455777766653
No 140
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.50 E-value=0.31 Score=46.76 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
...+++.+|+|+|||... ..+...++.+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la----~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA----QTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHH----HHHHHHTTCCEEEEE
T ss_pred CCCEEEECCCCCCHHHHH----HHHHHHhCCCEEEec
Confidence 468999999999999775 233434566666554
No 141
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.42 E-value=0.72 Score=44.89 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=27.5
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCH
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTV 281 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~ 281 (381)
|+=+++.+|.|+|||...+.-+..+. ..|-+++++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~-~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ-AAGGIAAFIDAEHAL 101 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECCCCc
Confidence 56688999999999966532233333 457788888766543
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.26 E-value=1.1 Score=40.99 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=14.1
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++.+|+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999665
No 143
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.26 E-value=0.68 Score=42.19 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.2
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++.+|+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999665
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.23 E-value=0.45 Score=48.01 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=42.2
Q ss_pred CCCCHHHHhhchHHHHHHHHHhCC--CCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 200 GTLSFEELQALDDMEFANVVIFGN--RAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 200 ~~~~fe~L~~l~~l~~~~~~~fG~--~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+..+|+.+..+++....++...-+ ..|--++.--+ --.+-+|+.+|.|+|||+.. .++....+.+.+.+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA----kAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA----RAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH----HHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH----HHHHHhhCCCceEEEh
Confidence 356788887777766666543221 11111111111 12378999999999999875 4455456777666654
No 145
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.17 E-value=1.7 Score=41.26 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=33.0
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQEL 291 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~l 291 (381)
|.=+++.+++|+|||...+.-..... ..|.+++++....+..+....+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a-~~g~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS-DNDDVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH-TTTCEEEEEESSSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEECCCCHHHHHHHHHHH
Confidence 45578889999999954432222333 3467888888888876655544443
No 146
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.10 E-value=0.49 Score=40.46 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=32.7
Q ss_pred CCchhhHH------HHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 251 GGKSLCYQ------DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 251 sGKTLaF~------dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
.||+++|. +.+...-...|+.+..++|+++..++..+++.+++|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45777765 222222225689999999999999999999998866
No 147
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.07 E-value=0.52 Score=39.89 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=25.3
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+++..++|+++..++..+++.+++|
T Consensus 57 ~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 57 DLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 5689999999999999999999998866
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.91 E-value=1.5 Score=43.99 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=21.8
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
..+|+.+|+|+|||.... .+....+.+...++.
T Consensus 51 ~~vLL~GppGtGKTtlAr----~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE----VIARYANADVERISA 83 (447)
T ss_dssp CEEEEECSTTSSHHHHHH----HHHHHTTCEEEEEET
T ss_pred cEEEEECCCCCcHHHHHH----HHHHHhCCCeEEEEe
Confidence 368999999999997752 233334555555543
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.89 E-value=1.4 Score=38.60 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=24.6
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHH-Hhh-----cCCcEEEEeCCC
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITL-NLK-----FGIPATFLNSQQ 279 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L-~~~-----~gI~a~~l~g~~ 279 (381)
.|.=+++++|+|+|||.... ++... ... .+-.++.+.+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~-~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH-TLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH-HHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHH-HHHHHHhCchhcCCCCCeEEEEECCC
Confidence 45678899999999996653 33221 101 144566776655
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.45 E-value=1.2 Score=41.25 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCEEEECCCCCCchhhHH
Q 042872 241 QDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~ 258 (381)
..+++.+|+|+|||....
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 151
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.25 E-value=1.1 Score=42.65 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHH-----cCCCEEEECCCCCCchhhHHHHHHHHHhh-----cCCcEEEEeCCCC
Q 042872 233 ACKASV-----AKQDCFVLLPTGGGKSLCYQDQIITLNLK-----FGIPATFLNSQQT 280 (381)
Q Consensus 233 AI~aiL-----~GrDvLviaPTGsGKTLaF~dQv~~L~~~-----~gI~a~~l~g~~~ 280 (381)
.+..+| .|+=+++.+|+|+|||.....-+...... .+-+++.+....+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 345555 35678999999999996553222221111 1557777776654
No 152
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.19 E-value=0.72 Score=49.75 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=15.1
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
+++++++|+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999765
No 153
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.12 E-value=0.55 Score=41.85 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.4
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+++..++..+++.+++|
T Consensus 53 ~~~~~~~~lhg~~~~~~r~~~~~~f~~g 80 (212)
T 3eaq_A 53 RLGHPAQALHGDLSQGERERVLGAFRQG 80 (212)
T ss_dssp HHTCCEEEECSSSCHHHHHHHHHHHHSS
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 5689999999999999999999998866
No 154
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.12 E-value=1.4 Score=38.60 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=31.7
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAV 287 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~i 287 (381)
.|.=+++.+++|+|||.-.+.-+.+.....+-++.++....+..+....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~ 77 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRRE 77 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHH
Confidence 3566899999999999544322222222457788888877776654333
No 155
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.10 E-value=0.89 Score=41.47 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=23.6
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
|+=.++.+|.|+|||.-.+.-+..+. ..+.++.++.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~-~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEccc
Confidence 55567889999999955433343333 235566666544
No 156
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.86 E-value=1 Score=44.92 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=22.3
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhc-CCcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKF-GIPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~-gI~a~~l~g 277 (381)
.+.+|+.+|+|+|||.... .+.... +.+.+.+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA~----aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK----AVATEANNSTFFSISS 201 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH----HHHHHCCSSEEEEECC
T ss_pred CceEEEECCCCCCHHHHHH----HHHHHcCCCCEEEEeH
Confidence 3679999999999997752 333333 445544443
No 157
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.81 E-value=0.96 Score=45.09 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=23.5
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhh-cCCcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLK-FGIPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~-~gI~a~~l~g 277 (381)
+..+++.+|+|+|||....--...+... .+.+++.+++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 3579999999999997653112222211 1566666654
No 158
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=87.72 E-value=0.47 Score=48.52 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCC---cEEEEe
Q 042872 224 RAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGI---PATFLN 276 (381)
Q Consensus 224 ~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI---~a~~l~ 276 (381)
..+++.|.+||.. ....++|+|+.|||||.+-..-+..+....++ ++.+++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~lt 61 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEE
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEe
Confidence 4688999999983 35789999999999998876556555543343 455554
No 159
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.63 E-value=0.73 Score=39.60 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=25.3
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+++..++|+++..++..+++.+++|
T Consensus 53 ~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 53 EQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 5689999999999999999999998866
No 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.53 E-value=0.83 Score=46.69 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+.+++.+|+|+|||.... .+....+.+.+.+++
T Consensus 50 ~gvLL~GppGtGKT~Lar----aia~~~~~~f~~is~ 82 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR----AVAGEANVPFFHISG 82 (476)
T ss_dssp SEEEEECCTTSSHHHHHH----HHHHHHTCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHH----HHHHHcCCCeeeCCH
Confidence 569999999999998752 333345666665553
No 161
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.40 E-value=1.3 Score=44.39 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=33.0
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQ 289 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~ 289 (381)
|.=+++.+++|.|||...+.-+..... .|.+++++...++..+....+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~-~g~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHH-TTCEEEEECSSSCTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH-cCCEEEEEECCCCHHHHHHHHH
Confidence 445788899999999665433444442 3888988888877665544433
No 162
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.39 E-value=2.6 Score=42.37 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=33.9
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVL 288 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il 288 (381)
.|.=+++.+++|+|||...+.-+..+....|.+++++....+..+....+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 34557888999999996654334444433378899998888876544333
No 163
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.23 E-value=0.66 Score=39.25 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=25.1
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+++..++..+++.+++|
T Consensus 52 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 52 NDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5689999999999999999999998866
No 164
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.64 E-value=0.74 Score=40.54 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=25.3
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+++..++|+++..++..+++.+++|
T Consensus 76 ~~g~~~~~lhg~~~~~~R~~~l~~F~~g 103 (191)
T 2p6n_A 76 LKGVEAVAIHGGKDQEERTKAIEAFREG 103 (191)
T ss_dssp HHTCCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 5699999999999999999999998866
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.34 E-value=1.4 Score=43.34 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=26.7
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~ 280 (381)
|+=+++.+|+|+|||... -++.......|-+++.+.+...
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEecccc
Confidence 556788999999999554 3433332245677777776554
No 166
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=85.68 E-value=5.9 Score=40.90 Aligned_cols=66 Identities=18% Similarity=0.091 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHH
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr 292 (381)
.++|+|...+..+-..+-+++..|-|.|||.+..-. +-.+....+..+.++ ..+..+...++..++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~v--a~t~~qA~~~~~~i~ 229 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGIL--AHKGSMSAEVLDRTK 229 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEE--ESSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHHHH
Confidence 367999999988755678999999999999876521 111221223333333 335555555555544
No 167
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.97 E-value=5.2 Score=37.86 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=27.1
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
|+-+++++|+|+|||-+...-...+....|-++.++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4567888999999997664333344423577777776654
No 168
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.87 E-value=0.55 Score=39.06 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=17.5
Q ss_pred HHcCCCEEEECCCCCCchhhH
Q 042872 237 SVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 237 iL~GrDvLviaPTGsGKTLaF 257 (381)
+-.+..+++.+|+|+|||.+.
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345689999999999999764
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.76 E-value=0.62 Score=38.72 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=17.4
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
..+..+++.+|+|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35679999999999999876
No 170
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=84.33 E-value=3.7 Score=40.82 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=41.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHH-HHhhcCCcEEEEeCCCCHHHHHHHHHHHH
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIIT-LNLKFGIPATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~-L~~~~gI~a~~l~g~~~~~e~~~il~~lr 292 (381)
.++|+|...+..+-..|-+++..+-+.|||.+..-.+.. +....|..+.++ ..+..+...+++.++
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~v--A~t~~qA~~vf~~i~ 229 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGIL--AHKGSMSAEVLDRTK 229 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEE--ESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEE--eCCHHHHHHHHHHHH
Confidence 568999999987755567899999999999876522221 111123344333 345555555565543
No 171
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.17 E-value=1 Score=45.90 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.+.+|+.+|+|+|||++. +.+....+.+.+.++
T Consensus 238 ~~~vLL~GppGtGKT~lA----raia~~~~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA----RAVANETGAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHH----HHHHHHCSSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHH----HHHHHHhCCCEEEEE
Confidence 367999999999999875 334444566666665
No 172
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.84 E-value=1.4 Score=46.36 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.9
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
++++++++|+|+|||.+.
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999775
No 173
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.28 E-value=1.6 Score=44.91 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=40.1
Q ss_pred CCCCHHHHhhchHHHHHHHHHhCCCCCcHHHHHHHHHH--HcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 200 GTLSFEELQALDDMEFANVVIFGNRAFRPLQHQACKAS--VAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 200 ~~~~fe~L~~l~~l~~~~~~~fG~~~fRpiQ~eAI~ai--L~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+..+|+.+..+++....+++..-+.-..| +....+ ---|-+|+.+|.|+|||+.. .++....+.+.+.+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~p---e~f~~~Gi~pprGILLyGPPGTGKTlLA----kAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSP---ERFATLGIDPPKGILLYGPPGTGKTLCA----RAVANRTDATFIRVIG 276 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCSEEEECSCTTSSHHHHH----HHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCH---HHHHHCCCCCCCceEeeCCCCCcHHHHH----HHHHhccCCCeEEEEh
Confidence 34667777777766665554321110001 111111 12478999999999999875 4455456666666553
No 174
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.18 E-value=3 Score=39.27 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.5
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+++.+|.|+|||...
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999665
No 175
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=83.07 E-value=0.73 Score=47.96 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCC---cEEEEe
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGI---PATFLN 276 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI---~a~~l~ 276 (381)
.++|-|++||.. .+..++|.|+.|||||.+-..-+..|....|+ ++.+++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lT 54 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT 54 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEe
Confidence 478999999986 36789999999999998876555555433333 345553
No 176
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.29 E-value=0.98 Score=44.18 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=16.9
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
...++++++|||+|||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4689999999999999876
No 177
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.22 E-value=4.3 Score=48.55 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHHc------CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 233 ACKASVA------KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 233 AI~aiL~------GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
.+..+|. |+.+++.+|+|+|||.....-+.... ..|-++.++.-.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTT
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcc
Confidence 3677776 78999999999999976532233333 467888888643
No 178
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=82.17 E-value=1.9 Score=43.29 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=24.5
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
-+++++++|+|||-....-...+. ..|.++.++..+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~-~~G~kVllv~~D 136 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ-KRGLKPALIAAD 136 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH-HHHCCEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecc
Confidence 678899999999976643344444 346677666554
No 179
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.15 E-value=5.5 Score=34.35 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.2
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788899999999665
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.02 E-value=3.2 Score=39.35 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
..+++.+|+|+|||.... .+...++.......|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~----~ia~~l~~~~~~~sg~ 85 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH----IIASELQTNIHVTSGP 85 (334)
T ss_dssp CCEEEESSTTSSHHHHHH----HHHHHHTCCEEEEETT
T ss_pred CeEEEECCCCCcHHHHHH----HHHHHhCCCEEEEech
Confidence 578999999999997652 2232345555555554
No 181
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.78 E-value=4.6 Score=38.71 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=28.6
Q ss_pred HHHHHHc-----CCCEEEECCCCCCchhhHHHHHHHHHhh------cCCcEEEEeCCCC
Q 042872 233 ACKASVA-----KQDCFVLLPTGGGKSLCYQDQIITLNLK------FGIPATFLNSQQT 280 (381)
Q Consensus 233 AI~aiL~-----GrDvLviaPTGsGKTLaF~dQv~~L~~~------~gI~a~~l~g~~~ 280 (381)
.+..+|. |+=+++.+|+|+|||.... ++..-... .+-+++.+....+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~-~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSH-TLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHH-HHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHH-HHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3556663 4567899999999996543 32221111 2556777776654
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=81.43 E-value=4.7 Score=43.99 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+-+|+.+|.|+|||+.. +.+....|.+...+.+
T Consensus 239 ~GILL~GPPGTGKT~LA----raiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA----RAVANETGAFFFLING 271 (806)
T ss_dssp CEEEEECCTTSCHHHHH----HHHHTTTTCEEEEEEH
T ss_pred CeEEEECCCCCCHHHHH----HHHHHHhCCeEEEEEh
Confidence 67999999999999874 4556567777776653
No 183
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=81.17 E-value=1.4 Score=46.71 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCC---cEEEEe
Q 042872 224 RAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGI---PATFLN 276 (381)
Q Consensus 224 ~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI---~a~~l~ 276 (381)
..++|.|++||.. ....++|.|+.|||||.+-..-+..|....|+ ++.+++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vT 63 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT 63 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEe
Confidence 4688999999986 35789999999999998776555555433343 344554
No 184
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=81.17 E-value=5.7 Score=36.99 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=28.0
Q ss_pred cCC-CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 239 AKQ-DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 239 ~Gr-DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
.|+ .+++.++.|.|||-+.+.....+. ..|.++.++.-+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V~v~d~D 43 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL-RQGVRVMAGVVE 43 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCCEEEEEeC
Confidence 344 689999999999988765555555 468887666543
No 185
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.08 E-value=3.2 Score=38.95 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=14.8
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
|+=+++.+|+|+|||...
T Consensus 98 g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 466899999999999554
No 186
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.91 E-value=1.5 Score=41.88 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=25.5
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+++..++..+++.+++|
T Consensus 50 ~~g~~~~~lhg~l~~~~r~~~~~~f~~g 77 (300)
T 3i32_A 50 RLGHPAQALHGDMSQGERERVMGAFRQG 77 (300)
T ss_dssp TTTCCEEEECSCCCTHHHHHHHHHHHHT
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhcC
Confidence 5689999999999999999999998876
No 187
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=80.87 E-value=1.8 Score=32.81 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHhhCCChHHHHHH---HHHHHhhhcCCCCceeEeee
Q 042872 5 DFEFEKARLLSLALEFGFDQDSANKS---LNRLISLYGDDGQDFISVEH 50 (381)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 50 (381)
..|..|..|+.||.++||.-..+-+| ||+||..|=.=-.+-.++||
T Consensus 9 ~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~~~~~~~ 57 (62)
T 2bzb_A 9 KIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDKVHKLEH 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 46778889999999999998887766 99999999776666666665
No 188
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=80.86 E-value=0.87 Score=39.72 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=17.4
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+++..+.|+++..++..+++.+++|
T Consensus 68 ~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 68 HEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp HTTCCEEEEC--------CHHHHHHHHT
T ss_pred HcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 5689999999999999999999998866
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.46 E-value=2.8 Score=39.13 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.1
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++.+|.|+|||...
T Consensus 38 ~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999765
No 190
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.24 E-value=7.2 Score=36.73 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=22.0
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
|+=+.+++++|+|||-....-...+. ..|-++.++..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCC
Confidence 44566779999999966542222222 335555555444
No 191
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.16 E-value=3.4 Score=39.32 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=24.0
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.++.+|+.+|+|+|||.+. +.+...++.+.+.++
T Consensus 50 ~~~~vll~GppGtGKT~la----~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA----ETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH----HHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHH----HHHHHHcCCCEEEec
Confidence 4578999999999999875 233334566665554
No 192
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.09 E-value=2.1 Score=46.16 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=23.3
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.++.+++++|+|+|||... +.+....+...+.++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa----rala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA----RAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH----HHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHH----HHHHHHcCCcEEEEE
Confidence 3678999999999999765 333434455555554
No 193
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.97 E-value=2.7 Score=40.53 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=25.3
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
.+.++++++|||+|||....-.+..+. ..|.+++++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 567999999999999965432222222 356666666543
No 194
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=78.81 E-value=3.2 Score=40.90 Aligned_cols=40 Identities=13% Similarity=-0.037 Sum_probs=25.8
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhh-cCCcEEEEeCCCCH
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLK-FGIPATFLNSQQTV 281 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~-~gI~a~~l~g~~~~ 281 (381)
-+++.+|.|+|||..-+.-+....+. .|-+++.+.+.-+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 47889999999996554333333322 26678888765543
No 195
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.25 E-value=3.2 Score=48.83 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQ 283 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e 283 (381)
|+-+++.+|+|+|||...+.-+..+. ..|-+++++....+..+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa-~~g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDP 774 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHH-HcCCCeEEEeccchHHH
Confidence 56789999999999966543333333 45778888887766543
No 196
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.61 E-value=0.44 Score=40.68 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=32.8
Q ss_pred CCCchhhHH------HHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 250 GGGKSLCYQ------DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 250 GsGKTLaF~------dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..+|+++|. +.+...-...|+.+..++|+++..++..+++.+++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 457899997 222222224588899999999999998899888766
No 197
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.73 E-value=1.6 Score=44.86 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHH-cCCCEEEECCCCCCchhhH
Q 042872 226 FRPLQHQACKASV-AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 226 fRpiQ~eAI~aiL-~GrDvLviaPTGsGKTLaF 257 (381)
+.+.+..-+...+ .|..+++++|||+|||-..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4455555555543 6788999999999999554
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.60 E-value=1.4 Score=47.52 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=21.2
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.+|+.+|||+|||.+.. .+.......+.+.+.++.
T Consensus 590 ~vLl~Gp~GtGKT~lA~-~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK-TLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEBSCSSSSHHHHHH-HHHHHHHSSGGGEEEECT
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhcCCCCcEEEEec
Confidence 58999999999997763 222222122445555543
No 199
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.02 E-value=6.7 Score=35.06 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.+.+++.+|+|+|||.... .+....+.+.+.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~----~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK----AIAGEAKVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH----HHHHHHTCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHH----HHHHHcCCCEEEEeH
Confidence 3569999999999997652 233234566666654
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.80 E-value=13 Score=35.72 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=14.3
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
|.=+.+++|+|+|||-..
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445678899999999665
No 201
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=76.18 E-value=2.6 Score=39.34 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=26.0
Q ss_pred HHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 233 ACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 233 AI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
...++..++.+++.+|+|+|||.... .+...++.+...+.
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~----~la~~~~~~~~~i~ 78 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVN----TLAKTMDLDFHRIQ 78 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHH----HHHHHTTCCEEEEE
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHH----HHHHHhCCCeEEEe
Confidence 33444578999999999999996642 23333455544443
No 202
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=76.01 E-value=3.4 Score=31.48 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHhhCCChHHHHHH---HHHHHhhh
Q 042872 5 DFEFEKARLLSLALEFGFDQDSANKS---LNRLISLY 38 (381)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 38 (381)
..|..|..|+.||.+.||.-..+-+| ||+||..|
T Consensus 9 ~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y 45 (64)
T 2c0s_A 9 RIEAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 46778889999999999988777665 99999988
No 203
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.32 E-value=3.1 Score=39.30 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=25.3
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+.+..++..+++.+++|
T Consensus 298 ~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (417)
T 2i4i_A 298 HEGYACTSIHGDRSQRDREEALHQFRSG 325 (417)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred HCCCCeeEecCCCCHHHHHHHHHHHHcC
Confidence 5689999999999999999999998866
No 204
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=74.93 E-value=6.6 Score=36.16 Aligned_cols=36 Identities=11% Similarity=-0.101 Sum_probs=25.3
Q ss_pred EEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCC
Q 042872 244 FVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280 (381)
Q Consensus 244 LviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~ 280 (381)
++.+|-|+|||...+..+.++. ..|.++.++....+
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~d 67 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCID 67 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC--
T ss_pred EEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccC
Confidence 4667779999988766666655 46888888876543
No 205
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.71 E-value=2.8 Score=38.90 Aligned_cols=43 Identities=14% Similarity=0.311 Sum_probs=31.9
Q ss_pred CchhhHH------HHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 252 GKSLCYQ------DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 252 GKTLaF~------dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
||+++|. +.+...-...++.+..++|+++..++..+++.+++|
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 292 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 292 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC
Confidence 5666665 233222235689999999999999999999998866
No 206
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.49 E-value=2.8 Score=39.33 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=25.4
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..++.+..++|+++..++..+++.+++|
T Consensus 288 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g 315 (412)
T 3fht_A 288 KEGHQVALLSGEMMVEQRAAVIERFREG 315 (412)
T ss_dssp HTTCCCEEECTTSCHHHHHHHHHHHHTT
T ss_pred hCCCeEEEecCCCCHHHHHHHHHHHHCC
Confidence 5689999999999999999999998866
No 207
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.35 E-value=3 Score=37.47 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHcCCCEEEECCCCCCchhhH
Q 042872 227 RPLQHQACKASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 227 RpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF 257 (381)
+..|..++..+-.|.=+.+++|.|+|||-.+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3457788888888988999999999999765
No 208
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=74.35 E-value=3.5 Score=38.44 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=25.1
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+++..++|+.+..++..+++.+++|
T Consensus 272 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 299 (391)
T 1xti_A 272 EQNFPAIAIHRGMPQEERLSRYQQFKDF 299 (391)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 5689999999999999999999998866
No 209
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=74.27 E-value=1.8 Score=43.40 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHc--CCCEEEECCCCCCchhhH
Q 042872 227 RPLQHQACKASVA--KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 227 RpiQ~eAI~aiL~--GrDvLviaPTGsGKTLaF 257 (381)
.+.+..++..++. |.-+++++|||+|||-..
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3456666766654 345789999999999654
No 210
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.15 E-value=7.3 Score=45.91 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHhhchHHHHHHHHHhCCCCCcHHH-------------HHHHHHHHc------CCCEEEECCCCCCchhhHHHHHHHHH
Q 042872 205 EELQALDDMEFANVVIFGNRAFRPLQ-------------HQACKASVA------KQDCFVLLPTGGGKSLCYQDQIITLN 265 (381)
Q Consensus 205 e~L~~l~~l~~~~~~~fG~~~fRpiQ-------------~eAI~aiL~------GrDvLviaPTGsGKTLaF~dQv~~L~ 265 (381)
+.+.+|+.......+.||...+.+.. ...+..+|. |+=+++.+|+|+|||...+.-+....
T Consensus 329 ~~~~~l~~a~~~i~~~fg~~~~~~l~~~~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcceeccccccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34445555555555567754332211 245777775 56688999999999965543333333
Q ss_pred hhcCCcEEEEeCCCCHHH
Q 042872 266 LKFGIPATFLNSQQTVSQ 283 (381)
Q Consensus 266 ~~~gI~a~~l~g~~~~~e 283 (381)
..|-+++++....+..+
T Consensus 409 -~~G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 409 -REGKTCAFIDAEHALDP 425 (1706)
T ss_dssp -HTTCCEEEECTTSCCCH
T ss_pred -HhCCCeEEEEccCchHH
Confidence 45788888887766544
No 211
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=73.84 E-value=6.1 Score=37.33 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=24.2
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
++.+++.+|||+|||....--...+....|.++..++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5789999999999996653222223213467776665
No 212
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=73.46 E-value=9.9 Score=35.26 Aligned_cols=40 Identities=8% Similarity=-0.223 Sum_probs=26.7
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~ 280 (381)
|.=.++.+|-|+|||...+..+.++. ..|.++.++....+
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccC
Confidence 34346778889999976655566655 45788888876543
No 213
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.44 E-value=3.7 Score=38.60 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=25.1
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+++..++..+++.+++|
T Consensus 280 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g 307 (400)
T 1s2m_A 280 DLGYSCYYSHARMKQQERNKVFHEFRQG 307 (400)
T ss_dssp HHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred hcCCCeEEecCCCCHHHHHHHHHHHhcC
Confidence 5689999999999999999999998866
No 214
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=73.38 E-value=8.8 Score=40.35 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHHHc----CC-CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHH
Q 042872 225 AFRPLQHQACKASVA----KQ-DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~----Gr-DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr 292 (381)
.|+..|.++|..++. |. ..++.+-||+|||++...-+.++ +-+++++... .....+....++
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~--~~~A~~l~~el~ 78 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHN--KTLAGQLYSEFK 78 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSS--HHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECC--HHHHHHHHHHHH
Confidence 577889999887663 33 46788999999999876333222 3355555443 333344444443
No 215
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=73.17 E-value=2 Score=48.43 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHH
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLN 265 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~ 265 (381)
.+++-|.++|..- +++++|.|.-|||||.+-..-+..+-
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll 48 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKI 48 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHH
Confidence 6899999999864 88999999999999988764444443
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=72.40 E-value=2.2 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.6
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.+..+++.+|+|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4679999999999999765
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.31 E-value=3.4 Score=37.36 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
++.+++.+|+|+|||.... .+...++.+.+.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~----~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR----RLAKLANAPFIKVE 82 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH----HHHHHHTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHH----HHHHHhCCCEEEEc
Confidence 5789999999999997652 23333456665554
No 218
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=72.26 E-value=3.4 Score=39.14 Aligned_cols=28 Identities=11% Similarity=0.345 Sum_probs=25.3
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+.+..++..+++.+++|
T Consensus 298 ~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (410)
T 2j0s_A 298 EANFTVSSMHGDMPQKERESIMKEFRSG 325 (410)
T ss_dssp HTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred hCCCceEEeeCCCCHHHHHHHHHHHHCC
Confidence 5689999999999999999999998866
No 219
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=72.13 E-value=2.2 Score=42.17 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=21.3
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..+|.|.+ +|+.++||+|||-+..
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 45677789987 4777899999997764
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=71.94 E-value=8.4 Score=33.59 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=29.3
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHh-hcCCcEEEEeCCCCHHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNL-KFGIPATFLNSQQTVSQA 284 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~-~~gI~a~~l~g~~~~~e~ 284 (381)
.|.=+.+++|+|+|||... .++..... ..+-..+.+.+.......
T Consensus 29 ~G~~~~l~GpnGsGKSTLl-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 74 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFA-AQFIYKGAEEYGEPGVFVTLEERARDL 74 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhCCCeEEEEEccCCHHHH
Confidence 5677889999999999665 34432222 345566777776665443
No 221
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=71.67 E-value=2.5 Score=41.08 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||-+..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 45666788987 5778999999998764
No 222
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=71.62 E-value=4.8 Score=36.88 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=25.0
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+.+..++..+++.+++|
T Consensus 260 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 287 (367)
T 1hv8_A 260 DIGFKAGAIHGDLSQSQREKVIRLFKQK 287 (367)
T ss_dssp HTTCCEEEECSSSCHHHHHHHHHHHHTT
T ss_pred hcCCCeEEeeCCCCHHHHHHHHHHHHcC
Confidence 5689999999999999999999998865
No 223
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.38 E-value=1.7 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHcCCCEEEECCCCCCchhhH
Q 042872 237 SVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 237 iL~GrDvLviaPTGsGKTLaF 257 (381)
+-.|+-+++++|||+|||-..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 346889999999999999655
No 224
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=71.31 E-value=4.3 Score=39.72 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=25.6
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+++..++|+.+..++..+++.+++|
T Consensus 322 ~~~~~~~~lhg~~~~~~R~~~l~~F~~g 349 (434)
T 2db3_A 322 EKEFPTTSIHGDRLQSQREQALRDFKNG 349 (434)
T ss_dssp HTTCCEEEESTTSCHHHHHHHHHHHHTS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 5789999999999999999999998866
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=71.24 E-value=5.5 Score=33.55 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=24.4
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.|+-+++.+|+|+|||-...--...+. ..|.+++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-EAGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-TTTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEEcH
Confidence 678899999999999966531122222 23655666554
No 226
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=70.92 E-value=16 Score=33.12 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=25.0
Q ss_pred CCEEEECCCCCCchhhHHHH-HHHHHhhcCCcEEEE
Q 042872 241 QDCFVLLPTGGGKSLCYQDQ-IITLNLKFGIPATFL 275 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQ-v~~L~~~~gI~a~~l 275 (381)
-.+++..++|-|||-+.+-. ++.+ ..|.++.++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEE
Confidence 47999999999999776544 3444 368898888
No 227
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.39 E-value=29 Score=33.11 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=25.5
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~ 280 (381)
=+++++|+|+|||-+...-...+. ..|-++.++..+..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~ 144 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCc
Confidence 467789999999976643333444 45677777766653
No 228
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=70.29 E-value=2.6 Score=41.41 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCY 257 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF 257 (381)
..|..++.|.++ |+.++||+|||-+.
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 345667789875 77789999999875
No 229
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=70.02 E-value=2.9 Score=40.90 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCY 257 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF 257 (381)
..|..++.|.++ |+.++||+|||-+.
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEee
Confidence 345667789874 77789999999875
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.80 E-value=1.5 Score=37.57 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.3
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
+.|+=+++++|+|+|||-..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999665
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=69.54 E-value=3.4 Score=34.82 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
++.+++++|+|+|||-..
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999665
No 232
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=69.46 E-value=7.9 Score=36.75 Aligned_cols=16 Identities=0% Similarity=-0.348 Sum_probs=13.3
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
..|+.+|.|+|||-+.
T Consensus 20 ~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 20 SILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998654
No 233
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=69.45 E-value=3 Score=41.30 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=20.9
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||-+..
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 34566778987 4778899999998863
No 234
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=69.39 E-value=3 Score=41.04 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.9
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||-+..
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 34566788986 4777899999998764
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.28 E-value=26 Score=33.17 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.4
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
|+=+.+++|+|+|||-..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 445678899999999665
No 236
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=69.09 E-value=3.1 Score=40.52 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||-+..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 46778899987 5778899999997764
No 237
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=69.09 E-value=6.1 Score=42.28 Aligned_cols=33 Identities=30% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEECCCCCCchhhH
Q 042872 225 AFRPLQHQACKASVAK--QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~G--rDvLviaPTGsGKTLaF 257 (381)
.+|.-|.+|+..++.- .-.++.|+-|.|||.+-
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~l 209 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALA 209 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHH
Confidence 5778899999988862 23577899999999654
No 238
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=68.91 E-value=2.9 Score=41.19 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=20.6
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||.+..
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 34556778987 5777899999998763
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.69 E-value=1.9 Score=40.07 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=33.2
Q ss_pred CCCHHHHhhchHHHHHHHHHhCCCCCcHH-HHHHHHHH-H-cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 201 TLSFEELQALDDMEFANVVIFGNRAFRPL-QHQACKAS-V-AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 201 ~~~fe~L~~l~~l~~~~~~~fG~~~fRpi-Q~eAI~ai-L-~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
..+|+.+..++++...+....-+ |+ ..+++..+ + -.+-+++.+|.|+|||... +.+....+...+.+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~----~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa----kala~~~~~~~i~i~g 77 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILA----PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA----KAVANESGLNFISVKG 77 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTH----HHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH----HHHHHHTTCEEEEEET
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH----HhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH----HHHHHHcCCCEEEEEc
Confidence 35567777666666655543211 11 11222221 1 1234999999999999775 2233234555555554
No 240
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=68.63 E-value=2.9 Score=41.10 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
..|..++.|.++ |+.++||+|||-+..
T Consensus 96 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 96 PILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 456677889874 777899999998764
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.58 E-value=2.5 Score=43.39 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCEEEECCCCCCchhhH
Q 042872 229 LQHQACKASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 229 iQ~eAI~aiL~GrDvLviaPTGsGKTLaF 257 (381)
.=..++.++..|..+|+.+|+|+|||...
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 33455556678899999999999999775
No 242
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.51 E-value=1.9 Score=41.45 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.2
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
-.|+.+++++|||+|||-..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 36889999999999999654
No 243
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=68.34 E-value=2.4 Score=38.70 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.2
Q ss_pred CCEEEECCCCCCchhhHH
Q 042872 241 QDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~ 258 (381)
..+++.+|+|+|||.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997763
No 244
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=68.30 E-value=3 Score=41.20 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
..|..++.|.++ |+.++||+|||-+..
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 456677899875 677899999998864
No 245
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.26 E-value=4.4 Score=36.66 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=22.3
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
+.+|+.+|+|+|||.... .+....+.+.+.++
T Consensus 65 ~~vLl~G~~GtGKT~la~----~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA----KIAEESNFPFIKIC 96 (272)
T ss_dssp EEEEEECSTTSSHHHHHH----HHHHHHTCSEEEEE
T ss_pred eEEEEECCCCCcHHHHHH----HHHHHhCCCEEEEe
Confidence 479999999999997753 23333566666554
No 246
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=68.25 E-value=3 Score=41.48 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
..|..++.|.++ |+.++||+|||-+..
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 456667889874 677899999998753
No 247
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=68.10 E-value=3.3 Score=40.92 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 231 HQACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 231 ~eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
...|..++.|.+ +|+.++||+|||-+..
T Consensus 79 ~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 79 EEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 345667789987 4777899999998764
No 248
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.79 E-value=3.7 Score=41.06 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
..|..++.|.++ |+.++||+|||-+..
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 367888999875 777899999998864
No 249
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=67.55 E-value=3.1 Score=40.84 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||-+..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 45667789987 4677899999998864
No 250
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.67 E-value=2.2 Score=37.35 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.2
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+-+.+++|+|+|||-..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999665
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=66.16 E-value=1.8 Score=40.25 Aligned_cols=21 Identities=33% Similarity=0.259 Sum_probs=16.9
Q ss_pred HHcCCCEEEECCCCCCchhhH
Q 042872 237 SVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 237 iL~GrDvLviaPTGsGKTLaF 257 (381)
+-.|.-+++++|||+|||-..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 345677899999999999665
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=66.09 E-value=8.5 Score=46.13 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHc------CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHH
Q 042872 232 QACKASVA------KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQ 283 (381)
Q Consensus 232 eAI~aiL~------GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e 283 (381)
..+..+|. |+=+++.+|+|+|||...+.-+.... ..|-+++++....+...
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a-~~G~~vlyis~E~s~~~ 425 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDP 425 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEcCCCHHH
Confidence 45666664 45678889999999966543333333 45678888887766543
No 253
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.06 E-value=3.8 Score=41.22 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
..|..++.|.++ |+.++||+|||.+..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 478888999875 777899999998864
No 254
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.85 E-value=3.5 Score=41.60 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=21.1
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||.+..
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 35667788976 5777899999998764
No 255
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.84 E-value=3.3 Score=40.71 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 231 HQACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 231 ~eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
...|..++.|.++ |+.++||+|||-+..
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 3456778899875 777899999998864
No 256
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=65.65 E-value=4.5 Score=38.04 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=23.3
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
....+|+.+|||+|||.+.. .+.......+.+.+.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr-~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR-ALHACSARSDRPLVTLN 60 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH-HHHHHSSCSSSCCCEEE
T ss_pred CCCcEEEECCCCchHHHHHH-HHHHhCcccCCCeEEEe
Confidence 45789999999999997752 23332212344555554
No 257
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.65 E-value=3.4 Score=40.98 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 231 HQACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 231 ~eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
...|..++.|.+ +|+.++||+|||.+..
T Consensus 90 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 90 SPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 345566788987 4777899999997753
No 258
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=65.56 E-value=18 Score=35.82 Aligned_cols=25 Identities=12% Similarity=-0.084 Sum_probs=18.6
Q ss_pred HHHHHH-----cCCCEEEECCCCCCchhhH
Q 042872 233 ACKASV-----AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 233 AI~aiL-----~GrDvLviaPTGsGKTLaF 257 (381)
.+..+| .|.=+.+++|.|+|||...
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHH
Confidence 455666 3566888999999999554
No 259
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=65.40 E-value=3.7 Score=41.68 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||.+..
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 44566788987 5777899999998864
No 260
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=65.38 E-value=22 Score=36.48 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=35.4
Q ss_pred HHHHH---HcCCCEEEECCCCCCchhhHHHHHHHHHhhc-CCcEEEEeCCCCHHHHHHHHHHHH
Q 042872 233 ACKAS---VAKQDCFVLLPTGGGKSLCYQDQIITLNLKF-GIPATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 233 AI~ai---L~GrDvLviaPTGsGKTLaF~dQv~~L~~~~-gI~a~~l~g~~~~~e~~~il~~lr 292 (381)
+|..+ ..|+-+++.+|.|.|||.....-+....... .+.+....|.. ..+....+..+.
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGer-ttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGER-TREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSC-HHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccC-chHHHHHHHHhh
Confidence 44444 4788899999999999977643333333222 45555555554 444455555443
No 261
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.31 E-value=3 Score=41.05 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 231 HQACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 231 ~eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
...|..++.|.+ +|+.++||+|||.+..
T Consensus 78 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 78 CPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 345667788987 4777899999997763
No 262
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=65.23 E-value=3.6 Score=41.17 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||-+..
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 35667788976 5778899999998753
No 263
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.96 E-value=4.3 Score=41.08 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCCCCHHHHhhchHHHHHHHHH--hCCCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 199 HGTLSFEELQALDDMEFANVVI--FGNRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 199 ~~~~~fe~L~~l~~l~~~~~~~--fG~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.+..+|+.+..+++....+... +-+..|--++.--++ -.+-+|+.+|.|+|||+.. .++....+.+...+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA----kAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA----RACAAQTNATFLKLA 247 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH----HHHHHHHTCEEEEEE
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH----HHHHHHhCCCEEEEe
Confidence 3456788887777765555442 111222112211111 2378999999999999875 334444556555554
No 264
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=64.86 E-value=4.1 Score=38.33 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=21.6
Q ss_pred hcCCcEEEEeC--------CCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNS--------QQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g--------~~~~~e~~~il~~lr~g 294 (381)
..|+++..++| +++..++..+++.+++|
T Consensus 383 ~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~ 418 (494)
T 1wp9_A 383 KDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG 418 (494)
T ss_dssp HTTCCEEEECCSSCC-------CCHHHHHHHHHHHT
T ss_pred HcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC
Confidence 56899999999 88888889999998866
No 265
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=64.85 E-value=3.8 Score=40.46 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHH-cCCC--EEEECCCCCCchhhHH
Q 042872 234 CKASV-AKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 234 I~aiL-~GrD--vLviaPTGsGKTLaF~ 258 (381)
|..++ .|.+ +|+.++||+|||-+..
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 33445 4877 5899999999998764
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=64.73 E-value=15 Score=33.61 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=28.7
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHH-HhhcCCcEEEEeCCCCHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITL-NLKFGIPATFLNSQQTVSQ 283 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L-~~~~gI~a~~l~g~~~~~e 283 (381)
.|.=+++++|+|+|||... .++..+ ....|.++.++.+..+..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~-~~ia~~~~~~~G~~v~~~~~e~~~~~ 78 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV-RQQALQWGTAMGKKVGLAMLEESVEE 78 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH-HHHHHHHHHTSCCCEEEEESSSCHHH
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHHHcCCeEEEEeCcCCHHH
Confidence 4566788899999999665 343333 2223667777777666543
No 267
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=64.42 E-value=6.5 Score=39.26 Aligned_cols=26 Identities=8% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 269 GIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 269 gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
++++..++|+++..++..+++.+++|
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~~g 391 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFKKD 391 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCHHHHHHHHHHHhcC
Confidence 89999999999999999999999876
No 268
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.41 E-value=8.5 Score=38.85 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=25.2
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
+.+|+.+|+|+|||.+. ..+...+|..++.++..
T Consensus 78 ~~lLL~GppGtGKTtla----~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA----HLVAQELGYDILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHH----HHHHHHTTCEEEEECTT
T ss_pred cEEEEECCCCCCHHHHH----HHHHHHcCCCEEEEeCC
Confidence 67999999999999775 33444567777777654
No 269
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=64.02 E-value=4.6 Score=36.21 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=20.1
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
+++.+|.|+||+- |...|.+++|+..+
T Consensus 3 Iil~GpPGsGKgT----qa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGT----QAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHH----HHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHH----HHHHHHHHHCCeEE
Confidence 6788999999984 34566667787653
No 270
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=64.01 E-value=7 Score=36.60 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=26.4
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
|+=.+..+|-|+|||-..+..+.+.. ..|.++.++....
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 45345667779999977765555554 4678888876443
No 271
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=63.84 E-value=3.2 Score=41.15 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.2
Q ss_pred HHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 233 ACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 233 AI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
.|..++.|.++ |+.++||+|||.+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 67788899874 677899999998764
No 272
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=63.75 E-value=5.5 Score=40.56 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=13.8
Q ss_pred EEEECCCCCCchhhHH
Q 042872 243 CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 243 vLviaPTGsGKTLaF~ 258 (381)
+++.++.|+|||-.++
T Consensus 164 ~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL 179 (446)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4788999999998875
No 273
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=63.58 E-value=3.4 Score=40.52 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
..|..++.|.++ |+.++||+|||-+..
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 367777899874 777899999998764
No 274
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.46 E-value=4.7 Score=40.79 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCCCHHHHhhchHHHHHHHHHhCC--CCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 200 GTLSFEELQALDDMEFANVVIFGN--RAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 200 ~~~~fe~L~~l~~l~~~~~~~fG~--~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+..+|+.+..+++....+....-+ ..|--++.--+ --.+-+|+.+|+|+|||+.. .++....|.+.+.+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA----kAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA----KAVAATIGANFIFSPA 248 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH----HHHHHHHTCEEEEEEG
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH----HHHHHHhCCCEEEEeh
Confidence 345677777666655544432211 11111111000 12378999999999999875 3444455666655543
No 275
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=63.38 E-value=3.6 Score=41.14 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.4
Q ss_pred HHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 234 CKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 234 I~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
|..++.|.+ +|+.++||+|||.+..
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEee
Confidence 445678987 5777899999998764
No 276
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=63.15 E-value=7.4 Score=39.47 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.+.+|+.+|+|+|||... ..|...++.+.+.+.
T Consensus 50 ~~~iLl~GppGtGKT~la----r~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA----RRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHH----HHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHH----HHHHHHcCCCceeec
Confidence 478999999999999775 344445666665554
No 277
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=62.97 E-value=4.9 Score=36.60 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=19.6
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
+=+++++|.|+||+- |...|.+.+|+..
T Consensus 30 kiI~llGpPGsGKgT----qa~~L~~~~g~~h 57 (217)
T 3umf_A 30 KVIFVLGGPGSGKGT----QCEKLVQKFHFNH 57 (217)
T ss_dssp EEEEEECCTTCCHHH----HHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHH----HHHHHHHHHCCce
Confidence 446788999999984 3445556667654
No 278
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.90 E-value=4.9 Score=40.51 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=37.9
Q ss_pred CCCCHHHHhhchHHHHHHHHHhCC--CCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 200 GTLSFEELQALDDMEFANVVIFGN--RAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 200 ~~~~fe~L~~l~~l~~~~~~~fG~--~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+..+|+.+..+++....+....-+ ..|--++.-- +--.|-+|+.+|+|+|||+.. .++....+.+.+.+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la----kAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV----KAVANSTKAAFIRVNG 239 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH----HHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH----HHHHHHhCCCeEEEec
Confidence 345677777666655554432211 1111111100 012367999999999999875 3344445666655543
No 279
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.82 E-value=2.5 Score=41.55 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=14.6
Q ss_pred CCEEEECCCCCCchhhHH
Q 042872 241 QDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~ 258 (381)
+-+++++|||+|||-.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357889999999997654
No 280
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.78 E-value=3.5 Score=40.42 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 232 QACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
..|..++.|.+ +|+.++||+|||-+..
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 35667788987 4777899999998764
No 281
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=62.75 E-value=4.6 Score=39.44 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.3
Q ss_pred EEEECCCCCCchhhHH
Q 042872 243 CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 243 vLviaPTGsGKTLaF~ 258 (381)
+++++|||+|||....
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 5778999999997653
No 282
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.60 E-value=5.7 Score=39.42 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcC--CcEEEEeC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFG--IPATFLNS 277 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~g--I~a~~l~g 277 (381)
++.+|+.+|+|+|||.... .+...++ ++.+.+.+
T Consensus 63 ~~~iLl~GppGtGKT~la~----ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL----AIAQELGSKVPFCPMVG 98 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH----HHHHHHCTTSCEEEEEG
T ss_pred CCeEEEECCCcCCHHHHHH----HHHHHhCCCceEEEEeH
Confidence 4689999999999997753 2333344 66666654
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=62.43 E-value=8.2 Score=34.91 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=21.8
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
.-+++++|.|+|||-.. ..|...++.....+.++
T Consensus 33 ~~i~l~G~~GsGKSTla----~~L~~~l~~~~~~~~~D 66 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH----RIKQKEFQGNIVIIDGD 66 (253)
T ss_dssp EEEEEESCGGGTTHHHH----HHHHHHTTTCCEEECGG
T ss_pred eEEEEECCCCCCHHHHH----HHHHHhcCCCcEEEecH
Confidence 45788999999999664 23333444444555554
No 284
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=62.30 E-value=3.3 Score=41.17 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=20.7
Q ss_pred HHHHHHcCCC--EEEECCCCCCchhhHH
Q 042872 233 ACKASVAKQD--CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 233 AI~aiL~GrD--vLviaPTGsGKTLaF~ 258 (381)
.|..++.|.+ +|+.++||+|||.+..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 5667788987 4777899999998764
No 285
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=61.90 E-value=8.2 Score=39.12 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=25.3
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++|+.+..++..+++.+++|
T Consensus 258 ~~g~~~~~~h~~l~~~~R~~~~~~f~~g 285 (523)
T 1oyw_A 258 SKGISAAAYHAGLENNVRADVQEKFQRD 285 (523)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 5699999999999999999999998866
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.56 E-value=10 Score=41.35 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEE
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFL 275 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l 275 (381)
.+-+|+.+|.|+|||+.. ..+....+.+.+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA----kaiA~e~~~~f~~v 542 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA----KAIANECQANFISI 542 (806)
T ss_dssp CSCCEEESSTTSSHHHHH----HHHHHTTTCEEEEC
T ss_pred CceEEEecCCCCCchHHH----HHHHHHhCCceEEe
Confidence 367999999999999875 34444556665544
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.55 E-value=2.9 Score=33.97 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=18.7
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEEE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPATF 274 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~ 274 (381)
+++.+|+|+|||-.- ..| ..+|...+.
T Consensus 4 I~l~G~~GsGKsT~a----~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA----KLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCHHHHH----HHH-HHTTCEEEE
T ss_pred EEEECCCCCCHHHHH----HHH-HHCCCcEEE
Confidence 678899999999654 334 456666443
No 288
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=61.37 E-value=8.3 Score=37.96 Aligned_cols=28 Identities=4% Similarity=-0.035 Sum_probs=24.4
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..+.++..++|+++..++..+++.+++|
T Consensus 369 ~~~~~v~~~~g~~~~~~r~~i~~~f~~g 396 (510)
T 2oca_A 369 NEYDKVYYVSGEVDTETRNIMKTLAENG 396 (510)
T ss_dssp TTCSSEEEESSSTTHHHHHHHHHHHHHC
T ss_pred HcCCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998866
No 289
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.07 E-value=2.7 Score=37.72 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999775
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.92 E-value=2.8 Score=40.93 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=15.4
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.-+++++|||+|||-..
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4456889999999999655
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=60.77 E-value=3.1 Score=36.52 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=15.2
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+=+++++|+|+|||-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3556788899999999665
No 292
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=60.71 E-value=8.1 Score=32.12 Aligned_cols=18 Identities=17% Similarity=-0.014 Sum_probs=14.9
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
++-+++.++.|+|||-+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 293
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=60.58 E-value=8.5 Score=39.89 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=25.4
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..|+.+..++++++..++..+++.+++|
T Consensus 289 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g 316 (591)
T 2v1x_A 289 NLGIHAGAYHANLEPEDKTTVHRKWSAN 316 (591)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 5799999999999999999999998866
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=60.40 E-value=3 Score=35.60 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=16.3
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
..|+-+.+++|+|+|||-..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999664
No 295
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=60.07 E-value=8.6 Score=38.98 Aligned_cols=26 Identities=8% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 269 GIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 269 gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
++++..++|+++..++..+++.+++|
T Consensus 315 ~~~v~~~hg~~~~~~R~~~~~~F~~g 340 (579)
T 3sqw_A 315 DLPILEFHGKITQNKRTSLVKRFKKD 340 (579)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred CCcEEEecCCCCHHHHHHHHHHhhcC
Confidence 89999999999999999999998876
No 296
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=60.00 E-value=3.4 Score=38.89 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=21.8
Q ss_pred hcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 267 KFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 267 ~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..++.+..++|+++..++..+++.+++|
T Consensus 302 ~~~~~~~~~h~~~~~~~r~~~~~~f~~g 329 (414)
T 3eiq_A 302 ARDFTVSAMHGDMDQKERDVIMREFRSG 329 (414)
T ss_dssp TTTCCCEEC---CHHHHHHHHHHHHSCC
T ss_pred hcCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 5689999999999999999999998765
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=59.77 E-value=2.7 Score=41.10 Aligned_cols=20 Identities=35% Similarity=0.275 Sum_probs=16.5
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
..|.-+++++|||+|||-..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999665
No 298
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=59.67 E-value=3.2 Score=37.99 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=12.8
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+++++|||+|||-..
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678899999999665
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.44 E-value=5.6 Score=33.25 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.4
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
+.-+++.++.|+|||-..
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345788999999999654
No 300
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=59.29 E-value=7 Score=32.01 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=18.1
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
-+++.+|.|+|||-.- ..|.+.+|...
T Consensus 3 ~i~l~G~~GsGKsT~~----~~L~~~l~~~~ 29 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA----AKLSKELKYPI 29 (173)
T ss_dssp EEEEECSSSSSHHHHH----HHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHH----HHHHHHhCCee
Confidence 3678999999999664 33444445543
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=59.24 E-value=3.5 Score=35.72 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=16.5
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.++-+++++|+|+|||-..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999765
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=58.95 E-value=5.6 Score=36.79 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.7
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
...+|+.+|+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999765
No 303
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=58.92 E-value=6.9 Score=37.16 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHhCCCCCcHHHH-HHHHHHHcCC-----CEEEECCCCCCchhhHH
Q 042872 219 VIFGNRAFRPLQH-QACKASVAKQ-----DCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 219 ~~fG~~~fRpiQ~-eAI~aiL~Gr-----DvLviaPTGsGKTLaF~ 258 (381)
++.||. |++. .++..++.|+ -+++.+|.|+|||+.+.
T Consensus 80 ~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 80 ELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 335654 5653 4467777764 37888999999998874
No 304
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.66 E-value=11 Score=34.06 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCchhhHH---HHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 250 GGGKSLCYQ---DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 250 GsGKTLaF~---dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..+|+++|. +.+..+...+. .+..++|+.+..++..+++.+++|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~r~~~~~~f~~~ 265 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD-NAIELRGDLPQSVRNRNIDAFREG 265 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT-TEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh-hhhhhcCCCCHHHHHHHHHHHHcC
Confidence 345566665 45556654333 688899999999999999998866
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=58.29 E-value=3.7 Score=35.02 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.4
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+=+.+++|+|+|||-..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666778899999999665
No 306
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=57.45 E-value=7.9 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=18.2
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
+++.+|.|+|||-.. ..|.+.+|+..+
T Consensus 3 I~l~G~~GsGKsT~a----~~L~~~~~~~~i 29 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA----EQIIEKYEIPHI 29 (216)
T ss_dssp EEEECSTTSSHHHHH----HHHHHHHCCCEE
T ss_pred EEEECCCCCCHHHHH----HHHHHHhCCcEe
Confidence 688999999999654 334334555543
No 307
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=57.42 E-value=37 Score=35.07 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=22.0
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
=+.+++|+|+|||-... .+..+....+-++.+..+..
T Consensus 295 VI~LVGpNGSGKTTLl~-~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG-KLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHHHTTCCEEEECCCT
T ss_pred EEEEECCCcccHHHHHH-HHHHHhhhcCCeEEEecCcc
Confidence 46788999999997663 22222223444555544444
No 308
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.15 E-value=8.6 Score=33.30 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
+++.+|.|+|||-.. ..|.+.+|+..+
T Consensus 3 I~l~G~~GsGKsT~a----~~L~~~~~~~~i 29 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG----ERIVEKYGIPHI 29 (216)
T ss_dssp EEEECSTTSSHHHHH----HHHHHHSSCCEE
T ss_pred EEEECCCCCCHHHHH----HHHHHHhCCcEE
Confidence 788999999999654 344445565543
No 309
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.76 E-value=5.5 Score=33.43 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.2
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.-+++.++.|+|||-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999654
No 310
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=56.62 E-value=4.4 Score=39.69 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=13.7
Q ss_pred CEEEECCCCCCchhhHH
Q 042872 242 DCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~ 258 (381)
=+++.+|||+|||-...
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 36778999999996654
No 311
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=56.57 E-value=49 Score=31.41 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=8.5
Q ss_pred cEEEEecccc
Q 042872 371 AGFVVDEAHC 380 (381)
Q Consensus 371 ~~lVIDEAHc 380 (381)
.+||+||||+
T Consensus 225 ~~li~Dea~~ 234 (435)
T 3piu_A 225 IHLISDEIYS 234 (435)
T ss_dssp CEEEEECTTG
T ss_pred CEEEEecccc
Confidence 3799999996
No 312
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=56.54 E-value=7.6 Score=37.77 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=18.7
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
-+++++|||+|||-... .|.+.++...+
T Consensus 7 ~i~i~GptGsGKTtla~----~La~~l~~~ii 34 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM----ALADALPCELI 34 (323)
T ss_dssp EEEEECCTTSCHHHHHH----HHHHHSCEEEE
T ss_pred EEEEECCCCCCHHHHHH----HHHHHcCCcEE
Confidence 47889999999996653 34444554333
No 313
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=56.48 E-value=7.4 Score=34.25 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=19.8
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
+.-+++.+++|+|||-.. ..|.+.+|+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a----~~La~~l~~~~ 35 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS----SRITTHFELKH 35 (227)
T ss_dssp CCEEEEEECTTSSHHHHH----HHHHHHSSSEE
T ss_pred CcEEEEECCCCCCHHHHH----HHHHHHcCCeE
Confidence 456889999999999653 34444455543
No 314
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=56.15 E-value=4.8 Score=35.79 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.4
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
-.|+=+.+++|+|+|||-..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36788889999999999665
No 315
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=56.07 E-value=4.8 Score=33.41 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.2
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
++-+++++|.|+|||-..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999664
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=56.01 E-value=4.8 Score=34.94 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.5
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
..|+=+++++|+|+|||-..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35778899999999999654
No 317
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=55.47 E-value=4 Score=36.85 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.9
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
+.|+=+++++|+|+|||-..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 46788889999999999765
No 318
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=55.45 E-value=13 Score=32.99 Aligned_cols=38 Identities=13% Similarity=-0.024 Sum_probs=27.6
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
|+=.++.+|.|+|||.+.+..+.++. ..|.++.++...
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 33357788999999987765566665 468888888654
No 319
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=55.41 E-value=15 Score=32.22 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=24.2
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCC
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQ 278 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~ 278 (381)
+.+.++.|+|||-....-+..|. ..|.++.++.-+
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~~ 41 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAV-REGWRVGTVKHH 41 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhhH-hcCCeeeEEEeC
Confidence 56788999999966543345555 568887777643
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.37 E-value=4.3 Score=33.92 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=15.1
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+-+++.+|.|+|||-.-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3566889999999999664
No 321
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.09 E-value=11 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.026 Sum_probs=19.0
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEEEE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPATFL 275 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l 275 (381)
+++.++.|+|||-.-..-...|. ..|++++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~-~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE-KRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH-HCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEe
Confidence 57789999999965421122222 238877654
No 322
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.97 E-value=8.6 Score=39.16 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=41.1
Q ss_pred CCCCCHHHHhhchHHHHHHHHHhC--CCCCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 199 HGTLSFEELQALDDMEFANVVIFG--NRAFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 199 ~~~~~fe~L~~l~~l~~~~~~~fG--~~~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
....+|+.+..+++....+....- +..+--++.--+ --.+-+|+.+|.|+|||+.. .++....+.+.+.+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA----kAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA----KAVANQTSATFLRIV 248 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH----HHHHHHHTCEEEEEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH----HHHHHHhCCCEEEEE
Confidence 345678888877776665554321 112211111111 12378999999999999875 344444566655554
Q ss_pred C
Q 042872 277 S 277 (381)
Q Consensus 277 g 277 (381)
+
T Consensus 249 ~ 249 (437)
T 4b4t_I 249 G 249 (437)
T ss_dssp S
T ss_pred H
Confidence 3
No 323
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.56 E-value=5.3 Score=34.24 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=13.8
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
+=+.+++|+|+|||-..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44678899999999665
No 324
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=54.52 E-value=5.4 Score=33.54 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=16.7
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
..++.+++.++.|+|||-..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999664
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=54.50 E-value=8.7 Score=33.51 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=19.0
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCc
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIP 271 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~ 271 (381)
+.-+++.++.|+|||-.- ..|.+.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a----~~La~~l~~~ 31 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA----PNLQERFHAA 31 (220)
T ss_dssp CCEEEEECCTTSSHHHHH----HHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHH----HHHHHHcCce
Confidence 456889999999999543 3344444543
No 326
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.38 E-value=8.8 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=19.9
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
+..+++.++.|+|||-.. ..|.+.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a----~~La~~l~~~~ 44 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA----PKLAKNFCVCH 44 (233)
T ss_dssp CCEEEEECCTTSSHHHHH----HHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHH----HHHHHHhCCce
Confidence 457899999999999543 34444455543
No 327
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=54.36 E-value=5.2 Score=33.73 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.0
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
.++++|+|+|||-.+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999775
No 328
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=54.12 E-value=5.1 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.4
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
+.+++.+|+|+|||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999665
No 329
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=54.07 E-value=3.5 Score=34.81 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=15.8
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+-+++++|.|+|||-..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999765
No 330
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.91 E-value=12 Score=32.53 Aligned_cols=49 Identities=12% Similarity=-0.036 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 227 RPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 227 RpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
++.++.. ..+-.|+-+++.++.|+|||-....-...|....|+++..+.
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3455555 334456778889999999997653222333313466666664
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=53.82 E-value=9.8 Score=32.61 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=19.7
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
.-+++.++.|+|||-.. ..|.+.+|++.+
T Consensus 21 ~~I~l~G~~GsGKST~a----~~La~~l~~~~i 49 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA----VKLAEKLGIPQI 49 (201)
T ss_dssp CEEEEECCTTSSHHHHH----HHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHH----HHHHHHhCCcEE
Confidence 45888999999999654 344444566543
No 332
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=53.81 E-value=7.9 Score=41.00 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCE--EEECCCCCCchhhHH
Q 042872 232 QACKASVAKQDC--FVLLPTGGGKSLCYQ 258 (381)
Q Consensus 232 eAI~aiL~GrDv--LviaPTGsGKTLaF~ 258 (381)
..|..++.|.++ |+.++||||||-+-.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~ 481 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTMS 481 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhccC
Confidence 468888999874 666899999997653
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.76 E-value=11 Score=32.08 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=23.0
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhc-CCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKF-GIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~-gI~a~~l~ 276 (381)
.|+-+++.++.|+|||-.- ..|.+.+ |++++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~----~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC----MNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH----HHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHH----HHHHHHHCCCceEEEe
Confidence 3566889999999999553 4555444 56655443
No 334
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=53.71 E-value=9.9 Score=31.52 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=19.6
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
+.+++.++.|+|||-+- ..|.+.+|++.
T Consensus 8 ~~i~l~G~~GsGKSTva----~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA----QELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHH----HHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHH----HHHHHHhCCCE
Confidence 46889999999999664 33444456554
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.36 E-value=9.7 Score=31.39 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=18.4
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCc
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIP 271 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~ 271 (381)
+-+++.++.|+|||-.. ..|.+.+|++
T Consensus 3 ~~I~l~G~~GsGKsT~a----~~La~~lg~~ 29 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG----RELARALGYE 29 (173)
T ss_dssp CCEEEESCTTSSHHHHH----HHHHHHHTCE
T ss_pred ceEEEECCCCCCHHHHH----HHHHHHhCCc
Confidence 35789999999999664 3344344554
No 336
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=53.22 E-value=4.8 Score=34.23 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=14.2
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
|.=+.+++|.|+|||-.+
T Consensus 9 gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445678999999999554
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.98 E-value=9 Score=32.21 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=19.6
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCc
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIP 271 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~ 271 (381)
.+.-+++.++.|+|||-.- ..|.+.+|++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~----~~La~~l~~~ 36 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC----EKIVQKYGYT 36 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH----HHHHHHHCCE
T ss_pred CCCEEEEECCCCCCHHHHH----HHHHHHhCCe
Confidence 4567889999999999654 3343344544
No 338
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.90 E-value=5.1 Score=33.71 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=13.2
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
=+++++|+|+|||-.+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3578899999999765
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=52.89 E-value=12 Score=31.46 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.2
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
.-++++++.|+|||-+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999764
No 340
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=52.74 E-value=9.4 Score=33.22 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=18.3
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
+++.+|.|+|||-.. ..|.+.+|+..+
T Consensus 3 I~l~G~~GsGKsT~a----~~L~~~~g~~~i 29 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA----QFIMEKYGIPQI 29 (214)
T ss_dssp EEEEESTTSSHHHHH----HHHHHHHCCCEE
T ss_pred EEEECCCCCCHHHHH----HHHHHHhCCeEE
Confidence 788999999999553 344444565543
No 341
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=52.41 E-value=41 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCC
Q 042872 247 LPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQ 279 (381)
Q Consensus 247 aPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~ 279 (381)
...|.|||.+-..-...|. ..|.++.++..+.
T Consensus 9 ~kgG~GKTt~a~~la~~la-~~g~~vlliD~D~ 40 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALS-RSGYNIAVVDTDP 40 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCT
T ss_pred CCCCccHHHHHHHHHHHHH-HCCCeEEEEECCC
Confidence 5678999977665555666 4788998887763
No 342
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=52.38 E-value=4.5 Score=37.28 Aligned_cols=19 Identities=21% Similarity=0.094 Sum_probs=15.4
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+=+++.+|||+|||-..
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4677899999999998443
No 343
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=52.32 E-value=9.2 Score=33.52 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=20.0
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
+.-+++.++.|+|||-.- ..|.+.+|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a----~~La~~l~~~~i 34 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC----EFIKKEYGLAHL 34 (217)
T ss_dssp CCEEEEEECTTSSHHHHH----HHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHH----HHHHHHhCceEE
Confidence 456888999999999543 344444555443
No 344
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=52.24 E-value=5.2 Score=33.08 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=12.8
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+++.+|.|+|||-..
T Consensus 5 I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEecCCCCCHHHHH
Confidence 678899999999654
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=52.04 E-value=11 Score=30.90 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=18.2
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
.+++.++.|+|||-.. ..|.+.+|++.
T Consensus 2 ~I~l~G~~GsGKsT~a----~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG----SLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHH----HHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHH----HHHHHHhCCCE
Confidence 3688999999999654 34444455554
No 346
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=51.87 E-value=5.1 Score=38.66 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.0
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
.++++|||+|||.++
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999776
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.62 E-value=9.4 Score=32.17 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.2
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.++-+++.++.|+|||-..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566889999999999654
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=51.51 E-value=9.7 Score=31.66 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=13.2
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
-+++.++.|+|||-..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999654
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=51.37 E-value=11 Score=32.09 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.1
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
-+++.++.|+|||-..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999653
No 350
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=51.29 E-value=4.6 Score=41.45 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.5
Q ss_pred CCcEEEEeCC--------CCHHHHHHHHHHHHhc
Q 042872 269 GIPATFLNSQ--------QTVSQAAAVLQELRQG 294 (381)
Q Consensus 269 gI~a~~l~g~--------~~~~e~~~il~~lr~g 294 (381)
|+++..++|+ ++..+|..+++.+++|
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g 463 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG 463 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC
Confidence 8999999999 9999999999998866
No 351
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.93 E-value=5.9 Score=38.44 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=13.7
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
-+++++|||+|||-.|
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999776
No 352
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=50.87 E-value=15 Score=30.41 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=21.0
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
+++.++.|+|||-....-...|. ..|+.+..+.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~-~~g~~~~~~~ 36 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD-NQGINNKIIN 36 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-hcCceEEEEE
Confidence 67889999999966532233344 3456665553
No 353
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=50.67 E-value=5.6 Score=35.12 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=11.7
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+=+.+++|+|+|||-..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666788999999999665
No 354
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=50.50 E-value=11 Score=31.56 Aligned_cols=18 Identities=17% Similarity=-0.038 Sum_probs=14.3
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
++-+++.++.|+|||-..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999654
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=50.26 E-value=6.3 Score=33.66 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=15.9
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.++.++++++.|+|||-+-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999664
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=50.23 E-value=6.2 Score=35.06 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.5
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
|-+++++|.|+|||-..
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999998654
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=50.15 E-value=5.5 Score=39.05 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.2
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
-+++++|||+|||-..
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 3678899999999664
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=49.47 E-value=15 Score=31.03 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=23.4
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
|.-+++.++.|+|||-....-...+. ..|.++.++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~-~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ-KEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEee
Confidence 55688899999999976632233343 3466665554
No 359
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=49.21 E-value=11 Score=33.21 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=17.7
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
+++.+|.|+|||-.. ..|.+.+|+..
T Consensus 3 I~l~G~~GsGKsT~a----~~La~~lg~~~ 28 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG----NLVKDKYSLAH 28 (223)
T ss_dssp EEEECCTTSCHHHHH----HHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHH----HHHHHHhCCeE
Confidence 678899999999653 34444456543
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.19 E-value=13 Score=30.92 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=17.3
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEE
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPAT 273 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~ 273 (381)
.++-+++.++.|+|||-.. ..|.+.+|.+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a----~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA----HTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHH----HHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHH----HHHHHhcCCCEE
Confidence 3556889999999999664 345545666644
No 361
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.16 E-value=12 Score=37.37 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCCEEEECCCCCCchhhHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~ 258 (381)
..++|+++|+|+|||....
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999998763
No 362
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=48.96 E-value=17 Score=38.12 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=35.2
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
.|..+||..+| |..+ +.+..+-...|+++..++|+.+..++..+++.++.|
T Consensus 444 ~~~~vlVf~~t---~~~a--e~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g 494 (661)
T 2d7d_A 444 RNERVLVTTLT---KKMS--EDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG 494 (661)
T ss_dssp TTCEEEEECSS---HHHH--HHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECC---HHHH--HHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC
Confidence 45667776654 2111 223222235799999999999999999999998866
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=48.85 E-value=15 Score=30.75 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=23.2
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.|.-+++.++.|+|||-...--...|. ..|++++.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~-~~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV-CHGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh-hCCCcEEEEC
Confidence 355678899999999976521112222 2477776654
No 364
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=48.62 E-value=6.2 Score=41.03 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.2
Q ss_pred CEEEECCCCCCchhhHH
Q 042872 242 DCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~ 258 (381)
++|+.+|+|+|||....
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999997653
No 365
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=48.61 E-value=6.5 Score=33.97 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.1
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+-+++++|.|+|||-..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677889999999999665
No 366
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=48.60 E-value=46 Score=33.52 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=28.6
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVS 282 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~ 282 (381)
.|.=+++.+|+|+|||... .++..+....|-+++.+.+..+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl-~~l~g~~~~~G~~vi~~~~ee~~~ 322 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLV-SRFVENACANKERAILFAYEESRA 322 (525)
T ss_dssp SSCEEEEEECTTSSHHHHH-HHHHHHHHTTTCCEEEEESSSCHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHhCCCCEEEEEEeCCHH
Confidence 5677888999999999655 344333333466777777665543
No 367
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=48.49 E-value=7 Score=35.61 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
+.+++++|+|+|||...
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999765
No 368
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=48.46 E-value=11 Score=34.36 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHH-cCCCEEEECCCCCCchhhH
Q 042872 227 RPLQHQACKASV-AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 227 RpiQ~eAI~aiL-~GrDvLviaPTGsGKTLaF 257 (381)
|+.+.+.+..++ .|+-+++.+|.|.|||..-
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHH
Confidence 344444454444 3678899999999999664
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=47.88 E-value=9.3 Score=35.34 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=18.1
Q ss_pred HHcCCCEEEECCCCCCchhhH
Q 042872 237 SVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 237 iL~GrDvLviaPTGsGKTLaF 257 (381)
.+.|+.++++++.|+|||-..
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345899999999999999775
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=47.65 E-value=12 Score=33.62 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=19.8
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
+.-+++.+|.|+|||-.. ..|.+.+|+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a----~~L~~~~g~~~ 57 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS----LNLKKSHCYCH 57 (243)
T ss_dssp CEEEEEECCTTSSHHHHH----HHHHHHHCCEE
T ss_pred CcEEEEECCCCCCHHHHH----HHHHHHhCCeE
Confidence 456899999999999553 34444455544
No 371
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=47.59 E-value=10 Score=46.65 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.7
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
..++.+|+++|||+|||...
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35799999999999999875
No 372
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=47.57 E-value=19 Score=37.87 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=34.5
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
.|..+||..+| |..+ +.+..+-...|+++..++|+.+..++..+++.++.|
T Consensus 438 ~~~~vlVf~~t---~~~a--e~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g 488 (664)
T 1c4o_A 438 RGERTLVTVLT---VRMA--EELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG 488 (664)
T ss_dssp TTCEEEEECSS---HHHH--HHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT
T ss_pred cCCEEEEEECC---HHHH--HHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC
Confidence 45566666553 1111 223332235789999999999999999999998866
No 373
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=47.55 E-value=20 Score=32.49 Aligned_cols=36 Identities=25% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
.-++++++.|+|||-....-...|. ..|..++.+.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~-~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS-KNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH-hCCCEEEEECc
Confidence 3578899999999966532222233 36777765543
No 374
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=47.39 E-value=7.3 Score=40.24 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.3
Q ss_pred cCCCEEEECCCCCCchhhHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~ 258 (381)
.+-.+++.++||||||.+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 46899999999999997754
No 375
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.32 E-value=8 Score=33.64 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHcCCCEEEECCCCCCchhhH
Q 042872 236 ASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 236 aiL~GrDvLviaPTGsGKTLaF 257 (381)
.+-.|+=+.+++|+|+|||-.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567777889999999999665
No 376
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=46.56 E-value=13 Score=38.41 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.3
Q ss_pred HHHHcCCCEEEECCCCCCchhhH
Q 042872 235 KASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 235 ~aiL~GrDvLviaPTGsGKTLaF 257 (381)
..+..|+.+++.+|+|+|||...
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34457899999999999999776
No 377
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=46.53 E-value=10 Score=38.31 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=13.2
Q ss_pred EEEECCCCCCchhhHH
Q 042872 243 CFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 243 vLviaPTGsGKTLaF~ 258 (381)
+++.+|||+|||....
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 5678999999997654
No 378
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=46.09 E-value=6.7 Score=34.19 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=14.1
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
|.=+.+++|+|+|||-..
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445678899999999654
No 379
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.09 E-value=15 Score=45.82 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=28.0
Q ss_pred hCCCCCcHHHHHHHHHH----HcCCCEEEECCCCCCchhhHHHHHHHHH
Q 042872 221 FGNRAFRPLQHQACKAS----VAKQDCFVLLPTGGGKSLCYQDQIITLN 265 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~ai----L~GrDvLviaPTGsGKTLaF~dQv~~L~ 265 (381)
.|+. +.|.|..=|-.+ ....-+++++|||+|||.|+.--..++.
T Consensus 884 ~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 884 RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6774 555554433333 2345789999999999999963333443
No 380
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=45.93 E-value=15 Score=30.68 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.4
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
+.+++++|.|+|||-..
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36889999999999665
No 381
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=45.14 E-value=7.5 Score=32.41 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
|+-+++++|.|+|||-..
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999765
No 382
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=44.94 E-value=27 Score=32.28 Aligned_cols=27 Identities=7% Similarity=0.297 Sum_probs=23.9
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 268 FGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 268 ~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
+|+++..++|+++..++..+++..++|
T Consensus 136 ~g~~~~~l~G~~~~~~R~~~i~~F~~~ 162 (271)
T 1z5z_A 136 LNTEVPFLYGELSKKERDDIISKFQNN 162 (271)
T ss_dssp HCSCCCEECTTSCHHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCHHHHHHHHHHhcCC
Confidence 589999999999999999999998754
No 383
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=44.45 E-value=12 Score=34.13 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHcCCCEEEECCCCCCchhhH
Q 042872 227 RPLQHQACKASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 227 RpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF 257 (381)
|.-+.+.+.. +..+-+++.+|.|.|||..-
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHH
Confidence 4445555555 55467889999999999664
No 384
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.15 E-value=9.4 Score=32.32 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.3
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
=+++++|.|+|||-..
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3678899999999765
No 385
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=44.15 E-value=15 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.3
Q ss_pred CCCEEEECCCCCCchhhHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~ 258 (381)
..++|+.+|+|+|||.+..
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999998763
No 386
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.78 E-value=11 Score=47.10 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.2
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
..|+.+|+++|||+|||...
T Consensus 1302 ~~~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHH
T ss_pred HCCCcEEEECCCCCCHHHHH
Confidence 36789999999999999654
No 387
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=43.42 E-value=25 Score=43.30 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=18.3
Q ss_pred HcCCCEEEECCCCCCchhhHH
Q 042872 238 VAKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF~ 258 (381)
...+-+|+++|||+|||.++.
T Consensus 921 ~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 921 KTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHCSEEEEECSTTSSHHHHHH
T ss_pred HhcceEEEECCCCCCHHHHHH
Confidence 356789999999999999985
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=43.40 E-value=27 Score=30.34 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=20.9
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
+++++|.|+|||-....-+..+. ..|.++..+.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~-~~g~~v~~i~ 41 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALC-ARGIRPGLIK 41 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHhcc-ccCCceeEEe
Confidence 67789999999965432233444 4566665554
No 389
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=43.38 E-value=8.5 Score=33.36 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.7
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
.-+.+++|+|+|||-..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999654
No 390
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=43.27 E-value=7.8 Score=33.36 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=14.0
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
|.=+.+++|+|+|||-..
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344667899999999665
No 391
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=43.00 E-value=21 Score=30.65 Aligned_cols=50 Identities=18% Similarity=0.053 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 225 AFRPLQHQACKASVAKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
..+..+..... .-.|.-+.+++|.|+|||-...--...+. ..|..+..+.
T Consensus 11 ~~~~~~~~~~~-~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 11 SVEKVDRQRLL-DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp CCCHHHHHHHH-TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred ccCHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 44555554331 22466778899999999976632222333 3354444444
No 392
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=42.69 E-value=24 Score=30.45 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=20.5
Q ss_pred CEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEE
Q 042872 242 DCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFL 275 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l 275 (381)
=+.+++|.|+|||-.. ..+..+-...+..+..+
T Consensus 24 ~i~i~G~~GsGKstl~-~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA-NQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHhhcCCeEEEe
Confidence 3677799999999765 33332222346666555
No 393
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=42.66 E-value=8.9 Score=32.92 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.4
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
+-++++++.|+|||-..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999664
No 394
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=42.64 E-value=9 Score=34.51 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=16.3
Q ss_pred HcCCCEEEECCCCCCchhhH
Q 042872 238 VAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 238 L~GrDvLviaPTGsGKTLaF 257 (381)
-.|+=+.+++|.|+|||-.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35777889999999999765
No 395
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=42.37 E-value=5.3 Score=39.14 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCchhhHH---HHHHHH---HhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 251 GGKSLCYQ---DQIITL---NLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 251 sGKTLaF~---dQv~~L---~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
.||+++|. ..+..+ -...++.+..++|+++..++..+++.+++|
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g 382 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG 382 (479)
T ss_dssp --------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC
Confidence 46788887 122222 124578899999999999999999998866
No 396
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=42.26 E-value=15 Score=40.38 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 263 TLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 263 ~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
.|....|+++..++|+++..++..+++.+++|
T Consensus 522 ~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g 553 (968)
T 3dmq_A 522 VLREREGIRAAVFHEGMSIIERDRAAAWFAEE 553 (968)
T ss_dssp HHHTTTCCCEEEECTTSCTTHHHHHHHHHHST
T ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCC
Confidence 34434699999999999999999999998865
No 397
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=42.12 E-value=10 Score=33.42 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.3
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
=.++++|+|+|||-++
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3577899999999776
No 398
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=41.88 E-value=5.4 Score=37.10 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCCchhhHH---HHH----HHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 250 GGGKSLCYQ---DQI----ITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 250 GsGKTLaF~---dQv----~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
..||+++|. ..+ ..|. ..++.+..++|+.+..++..+++.+++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 308 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLR-NDKFTVSAIYSDLPQQERDTIMKEFRSG 308 (394)
T ss_dssp ----------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHH-HcCCeEEEeeCCCCHHHHHHHHHHHHCC
Confidence 346888887 222 2232 4578888999999999998888887755
No 399
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.81 E-value=9.3 Score=33.17 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=13.4
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+.+++|.|+|||-.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999665
No 400
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=41.68 E-value=56 Score=29.53 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=28.6
Q ss_pred HHcCCCEEEECCCCCCchhhHHHHHH-HHHhh---------cCCcEEEEeCCCCHHH
Q 042872 237 SVAKQDCFVLLPTGGGKSLCYQDQII-TLNLK---------FGIPATFLNSQQTVSQ 283 (381)
Q Consensus 237 iL~GrDvLviaPTGsGKTLaF~dQv~-~L~~~---------~gI~a~~l~g~~~~~e 283 (381)
+..|+=+++++|+|+|||.... ++. .+... .+-+++++....+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~-~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~ 82 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL-QLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 82 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH-HHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH-HHHHHHhcCCCcCCCccCCCccEEEEECCCCHHH
Confidence 3467778999999999996653 332 23211 0246777776666543
No 401
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=41.40 E-value=6.6 Score=32.70 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=15.5
Q ss_pred CcHHHHHHHHHHHcCCCEEEECCCCCCchhhH
Q 042872 226 FRPLQHQACKASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 226 fRpiQ~eAI~aiL~GrDvLviaPTGsGKTLaF 257 (381)
+++.|...-+.-...-.+++++++|+|||-..
T Consensus 7 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli 38 (181)
T 2h17_A 7 HHHHSSGLVPRGSQEHKVIIVGLDNAGKTTIL 38 (181)
T ss_dssp --------------CEEEEEEEETTSSHHHHH
T ss_pred cccccCCccCCCCceeEEEEECCCCCCHHHHH
Confidence 34445555555555568999999999999654
No 402
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.36 E-value=36 Score=35.83 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.7
Q ss_pred CEEEECCCCCCchhhHH
Q 042872 242 DCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~ 258 (381)
.+|+.+|||+|||....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997763
No 403
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.19 E-value=50 Score=33.54 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHHHHHH---cCCCEEEECCCCCCchhhHH
Q 042872 228 PLQHQACKASV---AKQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 228 piQ~eAI~aiL---~GrDvLviaPTGsGKTLaF~ 258 (381)
..=..+|...+ .|.-+.+++|+|+|||....
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34456676665 68999999999999998774
No 404
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=40.98 E-value=67 Score=31.45 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=13.4
Q ss_pred CEEEECCCCCCchhhHH
Q 042872 242 DCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 242 DvLviaPTGsGKTLaF~ 258 (381)
=++++++.|+|||-...
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36778999999996543
No 405
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=40.88 E-value=68 Score=33.23 Aligned_cols=60 Identities=20% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHH---cCCCEEEECCCCCCchhhHHHHHHHHHhh-------cCCc-EEEEeCCCCHHHHHHHHHHHH
Q 042872 232 QACKASV---AKQDCFVLLPTGGGKSLCYQDQIITLNLK-------FGIP-ATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 232 eAI~aiL---~GrDvLviaPTGsGKTLaF~dQv~~L~~~-------~gI~-a~~l~g~~~~~e~~~il~~lr 292 (381)
.+|..++ .|...++.++.|.|||...++++.+-... .++. +.++.|. ..++....++.+.
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGe-R~~Ev~~~~~~~~ 221 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQ-KRSTVAQLVKRLT 221 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCC-CcHHHHHHHHHHH
Confidence 4566554 78999999999999998876665444322 4443 3445554 4555556666654
No 406
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=40.87 E-value=11 Score=35.93 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.7
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
.++++|+|+|||-.+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468899999999765
No 407
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=40.36 E-value=30 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.046 Sum_probs=24.0
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEe
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLN 276 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~ 276 (381)
.++-+++.++.|+|||-.-..-...|. ..++.+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~-~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC-AAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEee
Confidence 356688999999999976532233344 3567765443
No 408
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.86 E-value=11 Score=34.30 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.5
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667789999999999554
No 409
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=39.28 E-value=43 Score=29.62 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHhhcCCcEEEEeCCC--CHHHHHHHHHHHH
Q 042872 261 IITLNLKFGIPATFLNSQQ--TVSQAAAVLQELR 292 (381)
Q Consensus 261 v~~L~~~~gI~a~~l~g~~--~~~e~~~il~~lr 292 (381)
+.......|+.+.++.... +...+...++.+.
T Consensus 27 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (304)
T 3o1i_D 27 MVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCT 60 (304)
T ss_dssp HHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Confidence 3333446788888888776 6666666777655
No 410
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=39.11 E-value=22 Score=30.06 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=12.5
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+.+.++.|+|||-..
T Consensus 5 i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 5 VTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999765
No 411
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=39.02 E-value=35 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=19.6
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEEEE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPATFL 275 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l 275 (381)
+++.++.|+|||-.-..-...|. ..|++++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~-~~g~~~i~~ 34 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK-QKGYFVSLY 34 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 57889999999965421122222 237776654
No 412
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=38.98 E-value=11 Score=35.13 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=13.9
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
.=+++.+|.|+|||-..
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999654
No 413
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.80 E-value=11 Score=31.71 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=17.0
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCc
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIP 271 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~ 271 (381)
+++.++.|+|||-.- ..|.+.++..
T Consensus 3 I~i~G~~GsGKsT~~----~~L~~~l~~~ 27 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS----AEISKKLGYE 27 (205)
T ss_dssp EEEECCTTSCHHHHH----HHHHHHHCCE
T ss_pred EEEECCCccCHHHHH----HHHHHhcCCc
Confidence 678999999999553 3444445543
No 414
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=38.67 E-value=11 Score=33.62 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.3
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.+.-+++++|.|+|||-..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999654
No 415
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=38.65 E-value=24 Score=36.05 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=22.0
Q ss_pred CCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 241 QDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+.+++++|+|+|||.... .+....+.+.+.+.+
T Consensus 65 ~GvLL~GppGtGKTtLar----aIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR----AVAGEARVPFITASG 97 (499)
T ss_dssp SEEEEECSSSSSHHHHHH----HHHHHTTCCEEEEEG
T ss_pred ceEEEECCCCCCHHHHHH----HHHHHhCCCEEEEeh
Confidence 349999999999997752 222234555555554
No 416
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=38.38 E-value=12 Score=38.25 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=16.6
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|..+++++|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999776
No 417
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=38.02 E-value=12 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.5
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999554
No 418
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=37.86 E-value=56 Score=30.78 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=14.9
Q ss_pred CCCEEEECCCCCCchhhHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~ 258 (381)
|.=+.+++|+|+|||-...
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4456788999999997653
No 419
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=37.54 E-value=11 Score=32.50 Aligned_cols=18 Identities=17% Similarity=-0.149 Sum_probs=14.4
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
+.-+.+++|+|+|||-..
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455778899999999664
No 420
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=37.18 E-value=58 Score=33.67 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHH---cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCc-EEEEeCCCCHHHHHHHHHHHH
Q 042872 232 QACKASV---AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIP-ATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 232 eAI~aiL---~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~-a~~l~g~~~~~e~~~il~~lr 292 (381)
.+|..++ .|...++.++.|.|||...++++.+-. ..++. +.++.|. ..++....++.+.
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-~~dv~~V~~~iGe-R~~Ev~~~~~~~~ 213 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-GQDVICIYVAIGQ-KQSTVAGVVETLR 213 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-SCSEEEEEEEESC-CHHHHHHHHHHHH
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-cCCcEEEEEECCC-cchHHHHHHHHHh
Confidence 3555543 789999999999999988766665543 34544 3445554 4455555666554
No 421
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=37.18 E-value=12 Score=33.89 Aligned_cols=19 Identities=26% Similarity=0.107 Sum_probs=15.8
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+=+.+++|.|+|||-.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999654
No 422
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=36.98 E-value=12 Score=35.88 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.0
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+-+.+++|+|+|||-..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5777889999999999554
No 423
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=36.83 E-value=13 Score=32.40 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=14.8
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
+.-+++.+|.|+|||-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999654
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=36.73 E-value=23 Score=31.22 Aligned_cols=15 Identities=33% Similarity=0.133 Sum_probs=12.4
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+.+.++.|||||-+-
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999664
No 425
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=36.61 E-value=10 Score=32.20 Aligned_cols=19 Identities=21% Similarity=-0.134 Sum_probs=15.2
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+-+++.++.|+|||-.-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556788999999999664
No 426
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=36.46 E-value=12 Score=29.63 Aligned_cols=16 Identities=31% Similarity=0.206 Sum_probs=13.6
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 427
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.41 E-value=15 Score=34.58 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.4
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
=.++++|+|+|||-..
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 4678899999999665
No 428
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=36.14 E-value=13 Score=29.65 Aligned_cols=16 Identities=25% Similarity=0.085 Sum_probs=13.5
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 7 ~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5789999999999554
No 429
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=35.96 E-value=13 Score=30.89 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
..+++++++|+|||-.+
T Consensus 49 ~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 47899999999999554
No 430
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=35.69 E-value=53 Score=34.10 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHHHHHH---cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCc-EEEEeCCCCHHHHHHHHHHHH
Q 042872 232 QACKASV---AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIP-ATFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 232 eAI~aiL---~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~-a~~l~g~~~~~e~~~il~~lr 292 (381)
.+|..++ .|...++.++.|.|||...++++.+-. ..++. +.+++|. ..++....++.+.
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-~~dv~~V~~~IGe-R~~Ev~e~~~~~~ 226 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-GQGVYCIYVAIGQ-KKSAIARIIDKLR 226 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-TTTEEEEEEEESC-CHHHHHHHHHHHH
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-cCCcEEEEEEcCC-CcHHHHHHHHHHH
Confidence 4666665 799999999999999988766665443 34544 3445554 4455555666554
No 431
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=35.64 E-value=30 Score=29.73 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=14.7
Q ss_pred CCCEEEECCCCCCchhhH
Q 042872 240 KQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF 257 (381)
+.-+.+.++.|+|||.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346788999999999765
No 432
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=35.56 E-value=12 Score=31.94 Aligned_cols=16 Identities=25% Similarity=0.025 Sum_probs=13.1
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
-+.++++.|+|||-..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3678899999999664
No 433
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=35.56 E-value=17 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.3
Q ss_pred CCCEEEECCCCCCchhhHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~ 258 (381)
|.-+.+++|+|+|||-.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4557889999999997663
No 434
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=35.18 E-value=11 Score=32.05 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.5
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.-+.+++++|+|||-.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4557899999999999554
No 435
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=35.16 E-value=47 Score=31.06 Aligned_cols=50 Identities=8% Similarity=-0.098 Sum_probs=30.1
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCCHHHHHHHHH
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQTVSQAAAVLQ 289 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~ 289 (381)
.|+-+++.+.+|+||| +|.-|+..-+...|-++++++-.-+..+....++
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~ 69 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLKSDNLVGMFSISYPLQLIIRILS 69 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHH
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHH
Confidence 3566777756666666 4443443323346889988887777666444443
No 436
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.14 E-value=21 Score=37.52 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=14.3
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+|+.+|||+|||.+.
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999775
No 437
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=34.97 E-value=40 Score=28.52 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=22.7
Q ss_pred cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcEEEE
Q 042872 239 AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPATFL 275 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l 275 (381)
.|+-+++.++.|+|||-.-..-...|+ ..++.+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~~~~~~~ 44 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK-NNNVEVKHL 44 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEE
Confidence 356688999999999976532223344 346666443
No 438
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=34.86 E-value=47 Score=30.95 Aligned_cols=33 Identities=3% Similarity=0.115 Sum_probs=24.1
Q ss_pred CCCCCCchhhHHHHHHHHHhhcCCcEEEEeCCCC
Q 042872 247 LPTGGGKSLCYQDQIITLNLKFGIPATFLNSQQT 280 (381)
Q Consensus 247 aPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g~~~ 280 (381)
...|.|||.+-..-...|. ..|-+++++..+..
T Consensus 100 ~kgG~GKTtva~nLA~~lA-~~G~rVLLID~D~~ 132 (286)
T 3la6_A 100 VSPSIGMTFVCANLAAVIS-QTNKRVLLIDCDMR 132 (286)
T ss_dssp SSSSSSHHHHHHHHHHHHH-TTTCCEEEEECCTT
T ss_pred CCCCCcHHHHHHHHHHHHH-hCCCCEEEEeccCC
Confidence 3468999988765556666 46889999987653
No 439
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=34.74 E-value=14 Score=34.03 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.2
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+=+.+++|.|+|||-.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999665
No 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=34.66 E-value=20 Score=31.04 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=18.7
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcE
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPA 272 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a 272 (381)
+.+++|+|+|||-.. ..+..+-...|++.
T Consensus 5 v~IvG~SGsGKSTL~-~~L~~~~~~~g~~~ 33 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLI-TRMMPILRERGLRV 33 (171)
T ss_dssp EEEEESCHHHHHHHH-HHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcCCce
Confidence 567889999999766 33444433445544
No 441
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=34.66 E-value=14 Score=31.64 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=12.7
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+.+++|.|+|||-..
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568899999999665
No 442
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=34.60 E-value=78 Score=32.85 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=38.5
Q ss_pred HHHHHHH---cCCCEEEECCCCCCchhhHHHHHHHHHhhcCCcE-EEEeCCCCHHHHHHHHHHHH
Q 042872 232 QACKASV---AKQDCFVLLPTGGGKSLCYQDQIITLNLKFGIPA-TFLNSQQTVSQAAAVLQELR 292 (381)
Q Consensus 232 eAI~aiL---~GrDvLviaPTGsGKTLaF~dQv~~L~~~~gI~a-~~l~g~~~~~e~~~il~~lr 292 (381)
.+|..++ .|...++.++-|.|||...++.+.+-. ..++.+ .+++|. ...+....++.+.
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-~~dv~~V~~~IGe-R~~ev~e~~~~l~ 213 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-DSGIKCIYVAIGQ-KASTISNVVRKLE 213 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-SSSCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEeecCCCCCcchHHHHHHHhhc-cCCceEEEEEecC-ChHHHHHHHHHHh
Confidence 3566654 689999999999999988766654433 345544 445554 4455555555554
No 443
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=34.53 E-value=14 Score=33.20 Aligned_cols=19 Identities=32% Similarity=0.155 Sum_probs=15.9
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+=+.+++|.|+|||-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999655
No 444
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=34.50 E-value=15 Score=29.86 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.8
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 10 ~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999554
No 445
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=34.43 E-value=32 Score=32.09 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=18.3
Q ss_pred EEEECCCCCCchhhHHHHHHH-HHhhcCCcEEEEeCC
Q 042872 243 CFVLLPTGGGKSLCYQDQIIT-LNLKFGIPATFLNSQ 278 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~-L~~~~gI~a~~l~g~ 278 (381)
+.+.+|.|+|||-+. ..+.. |+ ..++.+.++..+
T Consensus 8 IgItG~sGSGKSTva-~~L~~~lg-~~~~~~~vI~~D 42 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVK-HTFDQIFR-REGVKAVSIEGD 42 (290)
T ss_dssp EEEESCC---CCTHH-HHHHHHHH-HHTCCEEEEEGG
T ss_pred EEEECCCCCCHHHHH-HHHHHHHh-hcCCCeeEeecc
Confidence 456789999999665 33333 44 345666666543
No 446
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=34.41 E-value=15 Score=29.47 Aligned_cols=16 Identities=38% Similarity=0.310 Sum_probs=13.6
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 8 ~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5899999999999554
No 447
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=34.36 E-value=17 Score=29.39 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=17.0
Q ss_pred CCceeEeeecchhHHHHHHhhhccCcchhhhhhHhhh
Q 042872 42 GQDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESE 78 (381)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|.|||||+- .+..+|+++.+.=.+
T Consensus 57 g~dFITVtK-------------~~~~dW~~ikp~I~~ 80 (94)
T 2k1h_A 57 VLDFISIDK-------------EDNANWNELLPQIEN 80 (94)
T ss_dssp ETTEEEEEE-------------CTTCCHHHHHHHHHH
T ss_pred eCCEEEEec-------------CCCCCHHHHHHHHHH
Confidence 578999976 235789999874433
No 448
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=34.24 E-value=1.6e+02 Score=26.40 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=8.5
Q ss_pred CccEEEEecccc
Q 042872 369 QLAGFVVDEAHC 380 (381)
Q Consensus 369 ~L~~lVIDEAHc 380 (381)
.+ ||+||||.
T Consensus 168 ~~--li~D~a~~ 177 (382)
T 4hvk_A 168 AA--LHIDATAS 177 (382)
T ss_dssp SE--EEEECTTT
T ss_pred CE--EEEEhHHh
Confidence 56 99999985
No 449
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=34.11 E-value=56 Score=33.86 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=32.7
Q ss_pred CCchhhHH------HHHHHHHhhcCCcEEEEeCCCCHHHHHHHHHHHHhc
Q 042872 251 GGKSLCYQ------DQIITLNLKFGIPATFLNSQQTVSQAAAVLQELRQG 294 (381)
Q Consensus 251 sGKTLaF~------dQv~~L~~~~gI~a~~l~g~~~~~e~~~il~~lr~g 294 (381)
+.|+++|. +.+..+....|+++..+.|+++..++..+++..++|
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 465 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNP 465 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHST
T ss_pred CCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCC
Confidence 44555553 444444446799999999999999999999998755
No 450
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=33.99 E-value=13 Score=31.34 Aligned_cols=16 Identities=25% Similarity=0.030 Sum_probs=13.0
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
-+.+.+++|+|||-+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999664
No 451
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=33.88 E-value=17 Score=32.71 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=16.1
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999665
No 452
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=33.69 E-value=15 Score=33.57 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.0
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999665
No 453
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=33.66 E-value=16 Score=29.23 Aligned_cols=16 Identities=25% Similarity=0.117 Sum_probs=13.7
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999654
No 454
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=33.59 E-value=16 Score=29.04 Aligned_cols=16 Identities=38% Similarity=0.285 Sum_probs=13.6
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 5 ~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 5 KVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999554
No 455
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=33.44 E-value=13 Score=33.78 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.8
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999665
No 456
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=33.44 E-value=15 Score=33.61 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.7
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667789999999999654
No 457
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=33.11 E-value=14 Score=29.52 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.4
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5789999999999544
No 458
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=33.10 E-value=16 Score=38.44 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCCEEEECCCCCCchhhHHHHHHHHHhhc---CCcEEEEeCC
Q 042872 240 KQDCFVLLPTGGGKSLCYQDQIITLNLKF---GIPATFLNSQ 278 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~dQv~~L~~~~---gI~a~~l~g~ 278 (381)
.-++++.+.||||||.+-.--+..|.... .++.+++...
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 57899999999999987653444444222 2455555543
No 459
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=32.92 E-value=16 Score=28.95 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.8
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 6 ~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 460
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=32.55 E-value=17 Score=29.26 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=17.2
Q ss_pred CCceeEeeecchhHHHHHHhhhccCcchhhhhhHhhh
Q 042872 42 GQDFISVEHCGDDFIATLAETMQDSEEWDDLQAMESE 78 (381)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (381)
|.|||||+- .+..+|+++.+.=.+
T Consensus 57 g~dFITVtK-------------~~~~dW~~ikp~V~~ 80 (91)
T 1pqx_A 57 VMDFISVDK-------------ENDANWETVLPKVEA 80 (91)
T ss_dssp ETTEEEEEE-------------CTTSCSTTTHHHHHH
T ss_pred eCCEEEEec-------------CCCCCHHHHHHHHHH
Confidence 578999976 335789999874433
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=32.51 E-value=31 Score=30.51 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.+.-+.++++.|+|||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566888999999999765
No 462
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=32.29 E-value=17 Score=29.09 Aligned_cols=16 Identities=31% Similarity=0.173 Sum_probs=13.6
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 5 ~i~v~G~~~~GKssli 20 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999554
No 463
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=32.09 E-value=15 Score=32.97 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.1
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666778899999999554
No 464
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=32.08 E-value=24 Score=32.62 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHHHcC----CCEEEECCCCCCchhhHH
Q 042872 225 AFRPLQHQACKASVAK----QDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 225 ~fRpiQ~eAI~aiL~G----rDvLviaPTGsGKTLaF~ 258 (381)
.|... ..++..++.+ +.+++.+|.|+|||..+.
T Consensus 40 ~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 40 EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 34444 5666666665 248889999999996553
No 465
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=31.83 E-value=17 Score=32.96 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.7
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667789999999999665
No 466
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=31.62 E-value=19 Score=32.55 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=15.3
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.-+.+++|.|+|||-..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788999999999665
No 467
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=31.57 E-value=15 Score=30.19 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=14.3
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
..+++++++|+|||-..
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999554
No 468
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=31.46 E-value=17 Score=34.09 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.6
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666788999999999665
No 469
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=31.33 E-value=18 Score=30.68 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.5
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+.++++.|+|||-.+
T Consensus 7 kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999654
No 470
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=31.16 E-value=18 Score=29.35 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=13.7
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 9 ~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 9 KVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999554
No 471
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=31.16 E-value=17 Score=33.66 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.8
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4677788999999999665
No 472
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=31.11 E-value=12 Score=35.87 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.4
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|+-+.+++|+|+|||-..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5778899999999999665
No 473
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=30.94 E-value=37 Score=32.26 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=24.9
Q ss_pred CccEEEECc-----cccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecccc
Q 042872 320 SCKLLYVTP-----ERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380 (381)
Q Consensus 320 ~~~IL~aTP-----ErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHc 380 (381)
...+|++.| +.+...+.+++.|..+ .+. . .+||+||+|+
T Consensus 199 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~--------------------g-~~lI~DEv~~ 242 (424)
T 2e7u_A 199 EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAY--------------------G-VLLIADEVMT 242 (424)
T ss_dssp GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGG--------------------T-CEEEEECTTT
T ss_pred CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc--------------------C-CEEEEecCcc
Confidence 345777766 3333345666677666 443 3 3799999996
No 474
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=30.83 E-value=1.9e+02 Score=25.36 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=28.2
Q ss_pred hCCCCCcHHHHHHHHHHHc--C-C--CEEEECCCCCCchhhHH
Q 042872 221 FGNRAFRPLQHQACKASVA--K-Q--DCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 221 fG~~~fRpiQ~eAI~aiL~--G-r--DvLviaPTGsGKTLaF~ 258 (381)
.|+....|.+.+.+..++. + + ..++-..||+|-+..++
T Consensus 32 ~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~l 74 (221)
T 3dr5_A 32 FGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYI 74 (221)
T ss_dssp TTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHH
Confidence 6888888999988887763 2 2 26668899999766553
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=30.78 E-value=16 Score=33.96 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=12.9
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+.+++|+|+|||-..
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999544
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=30.66 E-value=16 Score=30.31 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=14.4
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
..+++++++|+|||-..
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999554
No 477
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=30.65 E-value=19 Score=28.73 Aligned_cols=16 Identities=38% Similarity=0.254 Sum_probs=13.5
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 5 ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999554
No 478
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=30.44 E-value=18 Score=33.31 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.3
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666788999999999654
No 479
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=30.38 E-value=19 Score=32.91 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.7
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667789999999999665
No 480
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=30.29 E-value=37 Score=31.85 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=24.0
Q ss_pred CccEEEECc-----cccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecccc
Q 042872 320 SCKLLYVTP-----ERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380 (381)
Q Consensus 320 ~~~IL~aTP-----ErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHc 380 (381)
+..+|+++| +.+..++.+++.|..+..+. . .+||+||+|+
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~--------------------~-~~li~De~~~ 243 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH--------------------G-IMLIADEVQS 243 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH--------------------T-CEEEEECTTT
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHc--------------------C-CEEEEechhh
Confidence 456888877 32332344455555554332 3 3799999986
No 481
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=30.21 E-value=19 Score=33.27 Aligned_cols=19 Identities=32% Similarity=0.238 Sum_probs=15.5
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666788999999999655
No 482
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=30.17 E-value=2.7e+02 Score=25.23 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=8.4
Q ss_pred cEEEEecccc
Q 042872 371 AGFVVDEAHC 380 (381)
Q Consensus 371 ~~lVIDEAHc 380 (381)
.+||+||+|.
T Consensus 184 ~~li~De~~~ 193 (377)
T 3fdb_A 184 ARVLVDEIHA 193 (377)
T ss_dssp CEEEEECTTG
T ss_pred CEEEEEcccc
Confidence 4799999985
No 483
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=30.13 E-value=19 Score=33.16 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.6
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667789999999999665
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=30.13 E-value=19 Score=33.13 Aligned_cols=19 Identities=32% Similarity=0.158 Sum_probs=15.6
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666788999999999665
No 485
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=30.12 E-value=19 Score=28.65 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=13.6
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-.+
T Consensus 8 ~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 486
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=30.10 E-value=19 Score=33.35 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=15.9
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999665
No 487
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=30.00 E-value=82 Score=30.70 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=14.7
Q ss_pred CCCEEEECCCCCCchhhHH
Q 042872 240 KQDCFVLLPTGGGKSLCYQ 258 (381)
Q Consensus 240 GrDvLviaPTGsGKTLaF~ 258 (381)
|.=+.+++|+|+|||-...
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 3446788999999997653
No 488
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=29.94 E-value=19 Score=33.43 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.7
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677888999999999655
No 489
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=29.84 E-value=19 Score=28.84 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=13.7
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 8 ~i~v~G~~~~GKssli 23 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5889999999999654
No 490
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.54 E-value=19 Score=33.19 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.6
Q ss_pred cCCCEEEECCCCCCchhhH
Q 042872 239 AKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 239 ~GrDvLviaPTGsGKTLaF 257 (381)
.|.=+.+++|.|+|||-.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667788999999999655
No 491
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=29.53 E-value=20 Score=29.03 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.7
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-..
T Consensus 11 ~i~v~G~~~~GKssl~ 26 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLL 26 (181)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999554
No 492
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=29.53 E-value=70 Score=30.37 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=25.0
Q ss_pred CccEEEECc-----cccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecccc
Q 042872 320 SCKLLYVTP-----ERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380 (381)
Q Consensus 320 ~~~IL~aTP-----ErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHc 380 (381)
...+|++.| +.+...+.+++.|..+.++. . .+||+||+|+
T Consensus 201 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~--------------------~-~~li~DE~~~ 245 (439)
T 3dxv_A 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAH--------------------G-ILVVCDEVKV 245 (439)
T ss_dssp CEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT--------------------T-CEEEEECTTT
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc--------------------C-CEEEEecccc
Confidence 456777755 34444455566666665443 3 3799999996
No 493
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=29.46 E-value=42 Score=32.23 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=25.8
Q ss_pred CccEEEECc-----cccccCcchHHHHHHHHhcCCccccccccccccccccccCCccEEEEecccc
Q 042872 320 SCKLLYVTP-----ERIVGNQSFSEVLKCLHRKGSIRLKVLTTDVVVLPHTCQRQLAGFVVDEAHC 380 (381)
Q Consensus 320 ~~~IL~aTP-----ErL~~~~~f~~~L~~L~~~g~~~l~~~~~~~v~~~~~~~~~L~~lVIDEAHc 380 (381)
+..+|+++| +.+..++.+++.|..+..+. .+ +||+||+|+
T Consensus 201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~--------------------g~-~lI~DEv~~ 245 (453)
T 2cy8_A 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY--------------------GA-LFILDEVIS 245 (453)
T ss_dssp GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT--------------------TC-EEEEECTTT
T ss_pred CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc--------------------CC-EEEEecCcc
Confidence 356788876 33333456666666665443 33 799999996
No 494
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=29.42 E-value=28 Score=32.60 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCEEEECCCCCCchhhH
Q 042872 229 LQHQACKASVAKQDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 229 iQ~eAI~aiL~GrDvLviaPTGsGKTLaF 257 (381)
.-.+.+-.++.|+=+.+++|+|+|||-..
T Consensus 154 ~gi~~L~~~l~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 154 EGIDELVDYLEGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp TTHHHHHHHTTTCEEEEECSTTSSHHHHH
T ss_pred CCHHHHHhhccCcEEEEECCCCCCHHHHH
Confidence 34556667778888899999999999664
No 495
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=29.31 E-value=19 Score=32.84 Aligned_cols=15 Identities=53% Similarity=0.959 Sum_probs=12.3
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+.+++|.|+|||-.+
T Consensus 27 ~~liG~nGsGKSTLl 41 (240)
T 2onk_A 27 CVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999654
No 496
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=29.26 E-value=22 Score=30.23 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.6
Q ss_pred CCEEEECCCCCCchhhH
Q 042872 241 QDCFVLLPTGGGKSLCY 257 (381)
Q Consensus 241 rDvLviaPTGsGKTLaF 257 (381)
..+++++++|+|||-.+
T Consensus 13 ~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36899999999999665
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.25 E-value=19 Score=33.88 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=12.0
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+.+++|+|+|||-..
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456789999999655
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=29.15 E-value=18 Score=32.23 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=20.5
Q ss_pred EEEECCCCCCchhhHHHHHHHHHhhcCCcEEEEeC
Q 042872 243 CFVLLPTGGGKSLCYQDQIITLNLKFGIPATFLNS 277 (381)
Q Consensus 243 vLviaPTGsGKTLaF~dQv~~L~~~~gI~a~~l~g 277 (381)
+++++++||||| +|.. +|... +.+++.+.-
T Consensus 2 ilV~Gg~~SGKS-~~A~---~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKS-RHAE---ALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHH-HHHH---HHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHH-HHHH---HHHhc-CCCeEEEec
Confidence 689999999999 4433 34434 677766644
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=29.02 E-value=21 Score=28.71 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.4
Q ss_pred CEEEECCCCCCchhhH
Q 042872 242 DCFVLLPTGGGKSLCY 257 (381)
Q Consensus 242 DvLviaPTGsGKTLaF 257 (381)
.+++++++|+|||-.+
T Consensus 4 ki~ivG~~~~GKSsli 19 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA 19 (169)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999554
No 500
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=28.85 E-value=16 Score=31.13 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=12.3
Q ss_pred EEEECCCCCCchhhH
Q 042872 243 CFVLLPTGGGKSLCY 257 (381)
Q Consensus 243 vLviaPTGsGKTLaF 257 (381)
+++.++.|+|||-..
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999999654
Done!