BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042873
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82245|TSPO_ARATH Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1
SV=1
Length = 196
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 2 ASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRA 61
A+ A+ + ++ K + K AKR +SL +++ P+ VTL G+ Y
Sbjct: 17 ATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGN 76
Query: 62 LPKPF-WFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDP 120
K W PPLW +H L+SS M LAAWLVW DGGFH + ++L LY+AQ L ++WDP
Sbjct: 77 RAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDP 136
Query: 121 LVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
+ G+ GL + L CYK+F +++P A +LVKPCLAW F+ VN KL
Sbjct: 137 VTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193
>sp|P30536|TSPOA_HUMAN Translocator protein OS=Homo sapiens GN=TSPO PE=1 SV=3
Length = 169
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 34 SLAFSISVPLSVTLAIICIFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAW 90
++ F+++ L + + G G + Y L KP W PP W + TL S+ M ++
Sbjct: 8 AMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSA--MGYGSY 65
Query: 91 LVWAD-GGFHARSD-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKS 148
LVW + GGF ++ L LY Q++L+ W P+ LV + G A +
Sbjct: 66 LVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVA 125
Query: 149 FEKVNPFAKDLVKPCLAWMGFLTMVNY 175
+ +V+P A L+ P LAW+ F T +NY
Sbjct: 126 WYQVSPLAARLLYPYLAWLAFTTTLNY 152
>sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=Tspo PE=1 SV=1
Length = 169
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 52 IFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAWLVWAD-GGFHARSD-SLL 106
+ G G + Y +L KP W PP W + TL S+ M ++++W + GGF + L
Sbjct: 26 VRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSA--MGYGSYIIWKELGGFTEEAMVPLG 83
Query: 107 LYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAW 166
LY Q++L+ W P+ LV + G A ++ +V+P A L+ P LAW
Sbjct: 84 LYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYPYLAW 143
Query: 167 MGFLTMVNY 175
+ F TM+NY
Sbjct: 144 LAFATMLNY 152
>sp|P30535|TSPO_BOVIN Translocator protein OS=Bos taurus GN=TSPO PE=2 SV=1
Length = 169
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 34 SLAFSISVPLSVTLAIICIFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAW 90
++ F++ L L G G + Y +L KP W PP W + TL S+ M ++
Sbjct: 8 AVGFTLLPSLGGFLGAQYTRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSA--MGYGSY 65
Query: 91 LVWAD-GGFHARSD-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKS 148
++W + GGF + L LY Q++L+ W PL T LV + G A +
Sbjct: 66 MIWKELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMA 125
Query: 149 FEKVNPFAKDLVKPCLAWMGFLTMVNYKL 177
+ +V+P A L+ P LAW+ F M+NY++
Sbjct: 126 WHQVSPPAACLLYPYLAWLAFAGMLNYRM 154
>sp|Q9GMC9|TSPO_SHEEP Translocator protein OS=Ovis aries GN=TSPO PE=1 SV=1
Length = 169
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 47 LAIICIFGSG-KNYRALPKPFWFPPLWFIH--LATLSSSFFMSLAAWLVWAD-GGFHARS 102
L I G G + Y +L KP W PP W + TL S+ M ++L+W + GGF +
Sbjct: 21 LGTQYIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSA--MGYGSYLIWKELGGFSKEA 78
Query: 103 D-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFC--VAHFGTLVACYKSFEKVNPFAKDL 159
L LY Q++L+ W PL GA +G F + G A ++ +V+P A L
Sbjct: 79 VVPLGLYAGQLALNWAWPPLFF--GARQMGWAFVDLLLTGGMAAATAMAWRQVSPPAACL 136
Query: 160 VKPCLAWMGFLTMVNYKL 177
+ P LAW+ F M+NY++
Sbjct: 137 LYPYLAWLAFAAMLNYRM 154
>sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tspo PE=2 SV=1
Length = 169
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 52 IFGSG-KNYRALPKPFWFPPLWFIHLATLSSSFF--MSLAAWLVWAD-GGFHARSDSLL- 106
+ G G + Y +L KP W PP W LA + + + M +++VW + GGF D+++
Sbjct: 26 VRGEGLRWYASLQKPSWHPPRW--TLAPIWGTLYSAMGYGSYIVWKELGGFT--EDAMVP 81
Query: 107 --LYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCL 164
LY Q++L+ W P+ L + G A ++ +V+P A L+ P L
Sbjct: 82 LGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPYL 141
Query: 165 AWMGFLTMVNY 175
AW+ F T++NY
Sbjct: 142 AWLAFATVLNY 152
>sp|Q6UN27|TSPO_PIG Translocator protein OS=Sus scrofa GN=TSPO PE=2 SV=1
Length = 169
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 34 SLAFSISVPLSVTLAIICIFGSGKN-YRALPKPFWFPPLWFIHLATLSSSFF--MSLAAW 90
++ F++ L L+ + G G + Y L KP W PP W LA + + + M ++
Sbjct: 8 AVGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHW--TLAPIWGTLYSAMGYGSY 65
Query: 91 LVWAD-GGFHARSD-SLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKS 148
++W + GGF + L LY Q++L+ W PL LV V G A +
Sbjct: 66 MIWKELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWALVDLVLTGGVAAATAVA 125
Query: 149 FEKVNPFAKDLVKPCLAWMGFLTMVNY 175
+ +V+P A L+ P LAW+ F +NY
Sbjct: 126 WYQVSPLAARLLYPYLAWLAFAATLNY 152
>sp|Q750Z6|M28P1_ASHGO Probable zinc metalloprotease AGL209W OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=AGL209W PE=3 SV=1
Length = 1011
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 105 LLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNP--FAKDLVKP 162
L+ Y Q+ WD ++ + + CL FCV F LV ++NP F++D V P
Sbjct: 372 LVAYDMQLLKFNFWDAMLRLPVSVCLAY-FCVKLFQVLVG------QLNPYVFSRDYVSP 424
Query: 163 CLAWMGFLTMVNYKLI 178
LA +NY ++
Sbjct: 425 ILAEASMFIFMNYVIL 440
>sp|P17057|CRTK_RHOCB Protein CrtK OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=crtK PE=3 SV=1
Length = 160
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 52 IFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSD----SLLL 107
IF G Y +L KP W PP W +A + MS++A V G ++ L
Sbjct: 22 IFSPGAWYDSLKKPSWVPPNWLFPVAWSTLYILMSISAARV---SGLAMENELAVLGLAF 78
Query: 108 YVAQVSLSVLWDPL 121
+ Q++++ LW P+
Sbjct: 79 WAVQIAVNTLWTPI 92
>sp|O94327|TSPO_SCHPO Translocator protein homolog OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC725.10 PE=3 SV=2
Length = 164
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 99 HARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKD 158
+A + +LY+AQ++ + W PL L L G + K++ + P A
Sbjct: 82 NASRNGSILYIAQLAANFAWMPLFYGLAKPKLALADLGILTGLVGWLAKTWWPLAPTASK 141
Query: 159 LVKPCLAWMGFLTMVN 174
+ P LAW+G+ +N
Sbjct: 142 WLIPYLAWLGYAGYLN 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,202,408
Number of Sequences: 539616
Number of extensions: 2420316
Number of successful extensions: 6336
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6314
Number of HSP's gapped (non-prelim): 16
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)