Query 042873
Match_columns 180
No_of_seqs 147 out of 846
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03073 TspO_MBR: TspO/MBR fa 100.0 9.6E-42 2.1E-46 267.0 14.7 144 37-180 2-148 (148)
2 COG3476 Tryptophan-rich sensor 100.0 8.9E-41 1.9E-45 263.9 16.9 147 34-180 7-156 (161)
3 PHA02980 hypothetical protein; 100.0 1.3E-40 2.9E-45 263.4 15.1 121 58-180 32-152 (160)
4 KOG3797 Peripheral-type benzod 100.0 6.8E-39 1.5E-43 249.0 -0.3 148 33-180 11-161 (168)
5 PF07096 DUF1358: Protein of u 90.2 3.7 8E-05 31.6 8.9 92 1-97 1-106 (124)
6 PF02322 Cyto_ox_2: Cytochrome 76.9 52 0.0011 29.0 11.8 64 33-97 117-185 (328)
7 PF08248 Tryp_FSAP: Tryptophyl 68.4 3 6.5E-05 19.2 0.9 10 63-72 1-10 (12)
8 TIGR02230 ATPase_gene1 F0F1-AT 58.3 15 0.00032 27.2 3.5 41 34-89 47-87 (100)
9 COG1294 AppB Cytochrome bd-typ 57.5 1.4E+02 0.0031 26.7 15.3 65 32-97 123-193 (346)
10 PF03733 DUF307: Domain of unk 51.7 52 0.0011 21.3 4.9 13 113-126 2-14 (53)
11 PF06796 NapE: Periplasmic nit 50.9 51 0.0011 21.9 4.8 7 45-51 34-40 (56)
12 COG4603 ABC-type uncharacteriz 50.5 1.9E+02 0.0041 26.0 12.7 134 32-165 15-155 (356)
13 PF15284 PAGK: Phage-encoded v 48.0 32 0.00069 23.3 3.5 22 57-78 32-56 (61)
14 PF06024 DUF912: Nucleopolyhed 42.1 24 0.00053 25.7 2.5 46 23-68 56-101 (101)
15 PRK10927 essential cell divisi 40.4 26 0.00057 31.1 2.8 22 32-53 32-53 (319)
16 COG4459 NapE Periplasmic nitra 35.8 84 0.0018 21.1 4.0 15 12-26 5-19 (62)
17 PF07423 DUF1510: Protein of u 34.2 43 0.00094 28.1 3.0 26 30-55 13-38 (217)
18 PF05084 GRA6: Granule antigen 32.1 66 0.0014 26.2 3.6 45 2-53 124-171 (215)
19 PF07062 Clc-like: Clc-like; 32.1 1.8E+02 0.0038 24.3 6.3 54 119-175 97-150 (211)
20 PF15012 DUF4519: Domain of un 29.5 22 0.00048 23.6 0.4 36 11-48 7-42 (56)
21 COG0670 Integral membrane prot 28.1 3.6E+02 0.0078 22.6 17.4 30 22-51 18-47 (233)
22 PF14256 YwiC: YwiC-like prote 27.4 2.8E+02 0.006 21.1 11.1 64 37-118 9-75 (129)
23 PF13253 DUF4044: Protein of u 26.9 1.4E+02 0.003 17.9 3.6 7 20-26 4-10 (35)
24 COG0534 NorM Na+-driven multid 24.5 5.3E+02 0.012 23.3 12.1 46 108-153 176-222 (455)
25 PF04896 AmoC: Ammonia monooxy 24.0 1.2E+02 0.0027 25.9 4.1 48 49-96 119-168 (251)
26 TIGR03078 CH4_NH3mon_ox_C meth 23.7 1.3E+02 0.0029 25.3 4.1 47 49-95 107-155 (229)
27 COG3763 Uncharacterized protei 22.7 1.3E+02 0.0029 20.9 3.3 20 35-54 6-25 (71)
28 PF05473 Herpes_UL45: UL45 pro 22.7 1.8E+02 0.0039 23.8 4.7 7 67-73 84-90 (200)
29 PF13139 DUF3981: Domain of un 22.4 25 0.00054 25.8 -0.3 20 154-173 26-45 (114)
30 PF06423 GWT1: GWT1; InterPro 21.3 1.9E+02 0.0042 22.0 4.4 34 140-175 57-90 (136)
31 TIGR00203 cydB cytochrome d ox 20.9 6.3E+02 0.014 22.9 15.4 65 32-97 121-194 (378)
32 PF13807 GNVR: G-rich domain o 20.4 2.5E+02 0.0053 19.2 4.4 23 4-26 39-61 (82)
No 1
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=100.00 E-value=9.6e-42 Score=266.96 Aligned_cols=144 Identities=31% Similarity=0.540 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHhcC--CcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHH
Q 042873 37 FSISVPLSVTLAIICIFGS--GKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGG-FHARSDSLLLYVAQVS 113 (180)
Q Consensus 37 ~~i~~~~~~g~~~~~~~~~--~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~-~~~~~~~l~ly~~ql~ 113 (180)
+++++|.++|.++++++++ ++||++|+||+|+||+|+|+++|+++|++||+|+|++|++++ .++++.++.+|++|++
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~wy~~L~kP~~~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~~~~~~~~~~l~l~~~~l~ 81 (148)
T PF03073_consen 2 IFIAAPLVVGFLSGYLTPTDVSEWYDSLKKPSWTPPGWVFGPVWTILYILMGIASYLVWRKGGGSPRRRRALALYAIQLA 81 (148)
T ss_pred eeeHHHHHHHHHHHHHcCCcchHHHhhccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHhcccCcchhHHHHHHHHHHHH
Confidence 5678899999999999875 578999999999999999999999999999999999999874 4455788999999999
Q ss_pred hhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873 114 LSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180 (180)
Q Consensus 114 lN~~Ws~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l 180 (180)
+|.+|+++||+.|++++|+++++++++++..++..++|+||.|+++++||++|++|||+||++++||
T Consensus 82 ln~~W~~ifF~~~~~~la~~~~~~l~~~~~~~~~~~~~~~~~a~~l~~Pyl~W~~fAt~Ln~~i~~L 148 (148)
T PF03073_consen 82 LNFAWSPIFFGLRSLGLALIIILALLGLLAALIFAFWKISRTAGLLLIPYLAWLSFATYLNFSIWRL 148 (148)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-41 Score=263.91 Aligned_cols=147 Identities=23% Similarity=0.375 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCCcc-chhHHHHHHH
Q 042873 34 SLAFSISVPLSVTLAIICIFGS--GKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHA-RSDSLLLYVA 110 (180)
Q Consensus 34 ~l~~~i~~~~~~g~~~~~~~~~--~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~~~~-~~~~l~ly~~ 110 (180)
+...++++.++.+.++++++.+ .+||++|+||.|+||+|+||+||+++|++||+|+|++|+++..++ .+..+.+|.+
T Consensus 7 ~~~~~i~~~~~~~a~gs~~~~~~~~~wy~~L~kP~w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ 86 (161)
T COG3476 7 PLWLSILLVALAVALGSFFISSRDPNWYNNLKKPFWLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLL 86 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHhccCCCCCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 4556666666677777776543 358999999999999999999999999999999999999986544 5678899999
Q ss_pred HHHhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873 111 QVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180 (180)
Q Consensus 111 ql~lN~~Ws~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l 180 (180)
|+++|++|+++||++|++++|+++++.+++++..++..++|+|+.|++|++||++|+.|||+||+.+++|
T Consensus 87 ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~~~~~s~~As~LLiPYllW~~fat~L~~~i~~L 156 (161)
T COG3476 87 QLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTIIVWPISKTASLLLIPYLLWSPFATYLNFSIWQL 156 (161)
T ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975
No 3
>PHA02980 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=263.40 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=115.6
Q ss_pred ccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHHHH
Q 042873 58 NYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLWDPLVLVTGAACLGLVFCVA 137 (180)
Q Consensus 58 wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~~~~~~~~l~ly~~ql~lN~~Ws~lFF~~~~~~la~i~i~~ 137 (180)
.|++|+||+|+||+|+|||||+++|++||+|+|++|++++ +.+.++.+|++|+++|++|+++||+.|++++|++++++
T Consensus 32 ~Y~~L~KP~~~PP~wvF~pVWtiLY~lMgiA~~lvw~~~~--~~~~al~ly~~QL~LN~~WS~iFF~~~~~~lAli~ill 109 (160)
T PHA02980 32 NYTKSNKHLIFPPYYVRFSLYIISYIFMGHGMYLIHTRRR--DSNELIAYYILQLSINLSWFIVFYEMHMLRLSIAISTF 109 (160)
T ss_pred CCccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 4999999999999999999999999999999999997732 25678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873 138 HFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180 (180)
Q Consensus 138 l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l 180 (180)
++++++.++..|+|+|+.||+|++||++|++||++||++++++
T Consensus 110 L~~lv~~~~~~f~~i~~~Aa~LliPYl~Wv~FAt~LN~~I~~l 152 (160)
T PHA02980 110 SICLSVYNIYLWRFETDIIDKYVLPYLVTSYINLLLNYYIIRS 152 (160)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999985
No 4
>KOG3797 consensus Peripheral-type benzodiazepine receptor and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-39 Score=248.99 Aligned_cols=148 Identities=29% Similarity=0.299 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCC-C--ccchhHHHHHH
Q 042873 33 RSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGG-F--HARSDSLLLYV 109 (180)
Q Consensus 33 ~~l~~~i~~~~~~g~~~~~~~~~~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~-~--~~~~~~l~ly~ 109 (180)
++...++.+|.++|..++---...+||.+|+||+|.||++||+++|+.+|..||++||+||++++ + +..+..+++|+
T Consensus 11 ~~~~~~~l~p~~~~~f~~~~q~~~~wya~lKkPs~~Pp~~vf~pvw~llys~mGYaSyLvyK~gggf~~naakl~lglYg 90 (168)
T KOG3797|consen 11 ISKNGASLVPVLGGWFIGNSQKPRKWYANLKKPSFHPPASVFGPVWTLLYSTMGYASYLVYKAGGGFITNAAKLPLGLYG 90 (168)
T ss_pred hhhcceeecccceeEEecCCcchHHHHHhccCCCCCCccccccHHHHHHHcccccceeEEEecCCCcccccccchhHHHH
Confidence 34444777788877666511113589999999999999999999999999999999999999985 3 23467899999
Q ss_pred HHHHhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHHHHHhC
Q 042873 110 AQVSLSVLWDPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNYKLIYL 180 (180)
Q Consensus 110 ~ql~lN~~Ws~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~~i~~l 180 (180)
.|+.+|++|.|+||+.++++++++|+.++.+.+.++.+.|+|++|+||.|++||++|+.||++||+.|++.
T Consensus 91 aqlaln~Aw~Pif~g~~~~g~~l~dl~~ls~aaaa~~~a~y~v~~tAglllvPylaWlafatyL~y~v~k~ 161 (168)
T KOG3797|consen 91 AQLALNWAWMPIFFGLAKPGLALADLGILSGAAAALAVAWYPVAPTAGLLLVPYLAWLAFATYLNYNVWKE 161 (168)
T ss_pred HHHHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHHhheeecCcccceeehHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999873
No 5
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=90.22 E-value=3.7 Score=31.58 Aligned_cols=92 Identities=9% Similarity=-0.063 Sum_probs=50.1
Q ss_pred CCcccccccccCCCCCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCCCCCCCC-CC-h
Q 042873 1 MASQALHPLYKNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFG-------SGKNYRALPKPFWF-PP-L 71 (180)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~l~~~i~~~~~~g~~~~~~~~-------~~~wY~~L~kP~w~-PP-~ 71 (180)
|++|.-||-+..++-+...+.|+|.. ..+..+++......+.++|+.+. +.+|+++-..+.=. |- +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~FL~~Va~~s~~aGF~~tl~~aKKk~p~~F~kg~~~~~~l~esG 75 (124)
T PF07096_consen 1 METAVAEPGQSSSAKTEEGSEKSRKF-----LIKGGAFLGGVAGASALAGFGTTLALAKKKSPKWFSKGISQTKALHESG 75 (124)
T ss_pred CCCCcCCCCCCCcccccccchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHhccCcCcccCCcch
Confidence 89999999888665333333333333 33444455544455555554322 34566554333322 21 2
Q ss_pred h--hHH-HHHHHHHHHHHHHH--HHHHhcCC
Q 042873 72 W--FIH-LATLSSSFFMSLAA--WLVWADGG 97 (180)
Q Consensus 72 ~--vF~-~vW~ily~lmg~a~--~lv~~~~~ 97 (180)
- +.. .-|..+|...|+.. +.+|+-.+
T Consensus 76 asLAlRALgWGTlyA~~GvG~l~~~iwK~~G 106 (124)
T PF07096_consen 76 ASLALRALGWGTLYAVCGVGVLVFGIWKLSG 106 (124)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHhc
Confidence 2 222 25999999886664 66787654
No 6
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=76.91 E-value=52 Score=28.95 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hc-C-C--cccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 042873 33 RSLAFSISVPLSVTLAIICI-FG-S-G--KNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGG 97 (180)
Q Consensus 33 ~~l~~~i~~~~~~g~~~~~~-~~-~-~--~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~ 97 (180)
...+-+++.|...|.+-+-+ .+ + + ..|+.---+.++|...+.+..-..+|...| |.|+.+|..+
T Consensus 117 ~~~~gSll~~~~~G~~~g~~~~G~p~~~~~~~~g~~~~~l~pf~ll~Gl~~v~~~~~~G-A~~l~~kt~g 185 (328)
T PF02322_consen 117 VFFIGSLLPPFLLGVALGNLVSGLPIDANGNYTGGFFDLLSPFSLLGGLAVVALFALHG-AVFLALKTEG 185 (328)
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCcccccccccCchHHhccHHHHHHHHHHHHHHHHHH-HHHHHhhccH
Confidence 34455566777777665543 22 1 1 235544444577888888876666776666 4688887654
No 7
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=68.37 E-value=3 Score=19.19 Aligned_cols=10 Identities=60% Similarity=1.657 Sum_probs=7.9
Q ss_pred CCCCCCCChh
Q 042873 63 PKPFWFPPLW 72 (180)
Q Consensus 63 ~kP~w~PP~~ 72 (180)
+||.|-||-+
T Consensus 1 ekpfw~ppiy 10 (12)
T PF08248_consen 1 EKPFWPPPIY 10 (12)
T ss_pred CCccCCCCcc
Confidence 5899999854
No 8
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=58.33 E-value=15 Score=27.19 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 042873 34 SLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAA 89 (180)
Q Consensus 34 ~l~~~i~~~~~~g~~~~~~~~~~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~ 89 (180)
.+...+++|.++|+..|.- -+++|.+ +|+ |+++++++|+++
T Consensus 47 ~IG~~~v~pil~G~~lG~W--LD~~~~t--~~~-----------~tl~~lllGv~~ 87 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIW--LDRHYPS--PFS-----------WTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhcCC--CcH-----------HHHHHHHHHHHH
Confidence 3344556666665554432 2344554 333 666666666654
No 9
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=57.48 E-value=1.4e+02 Score=26.70 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhc---C-CcccCCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 042873 32 FRSLAFSISVPLSVTLAII-CIFG---S-GKNYRALPKPF-WFPPLWFIHLATLSSSFFMSLAAWLVWADGG 97 (180)
Q Consensus 32 ~~~l~~~i~~~~~~g~~~~-~~~~---~-~~wY~~L~kP~-w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~ 97 (180)
+...+-+.+.|+..|.+-+ ++.+ + ++.|..+.-+. .+||.-.=+++-..+|.+.|. +|++.+..+
T Consensus 123 ~~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g~~~~~l~~pf~~l~gl~~~~~~~l~Ga-~~l~~kT~g 193 (346)
T COG1294 123 WAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFDQLLNPFALLCGLGLVLMYVLHGA-AWLLLKTEG 193 (346)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCceeccCCCcccccHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence 3445556777777777766 4333 1 23366655444 457787777777788877775 566665443
No 10
>PF03733 DUF307: Domain of unknown function (DUF307); InterPro: IPR005185 This proteins contain a domain which occurs as one or more copies in a small family of putative membrane proteins.
Probab=51.68 E-value=52 Score=21.34 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=9.3
Q ss_pred HhhhhhhHHHHhhh
Q 042873 113 SLSVLWDPLVLVTG 126 (180)
Q Consensus 113 ~lN~~Ws~lFF~~~ 126 (180)
+.|..|+..+ |.-
T Consensus 2 l~NilW~i~~-G~~ 14 (53)
T PF03733_consen 2 LGNILWFIFF-GWW 14 (53)
T ss_pred hHHHHHHHHH-HHH
Confidence 5799999854 643
No 11
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=50.95 E-value=51 Score=21.89 Aligned_cols=7 Identities=14% Similarity=-0.159 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 042873 45 VTLAIIC 51 (180)
Q Consensus 45 ~g~~~~~ 51 (180)
++.+++|
T Consensus 34 v~~Vg~Y 40 (56)
T PF06796_consen 34 VAFVGGY 40 (56)
T ss_pred HHHHHHH
Confidence 3444444
No 12
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=50.47 E-value=1.9e+02 Score=26.00 Aligned_cols=134 Identities=18% Similarity=0.108 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc--ccCCCCCCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHhcCCCc--cchh-HH
Q 042873 32 FRSLAFSISVPLSVTLAIICIFGSGK--NYRALPKPFWFPPL-WFIHLATLSSSFFMSLAAWLVWADGGFH--ARSD-SL 105 (180)
Q Consensus 32 ~~~l~~~i~~~~~~g~~~~~~~~~~~--wY~~L~kP~w~PP~-~vF~~vW~ily~lmg~a~~lv~~~~~~~--~~~~-~l 105 (180)
.....+++++..++|.+--.+.+.+. -|..+-+.++..+. .-....=...++++|++.-...|.+-++ .+.+ ..
T Consensus 15 ~~~pl~ai~l~~~~~a~~~~~~G~~p~~~~~~lf~~~f~~~~~i~~~l~~~~pliltgL~~ava~raGlfNIG~EGQ~~~ 94 (356)
T COG4603 15 ILSPLIAILLALIVGALLLLLLGYDPLAAYSALFVGAFGSPWSIGELLVKAAPLILTGLGVAVAFRAGLFNIGAEGQFYA 94 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeChHHHHHH
Confidence 44445555555555544333344432 38777666665554 4444455677888999988888887543 1222 22
Q ss_pred HHHHHHHHhhhhhh-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHH
Q 042873 106 LLYVAQVSLSVLWD-PLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLA 165 (180)
Q Consensus 106 ~ly~~ql~lN~~Ws-~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~ 165 (180)
+....-++...... |-++...-..++-..-.++|+.+-...+.+.++|+.-.-+|+=|.+
T Consensus 95 Gai~a~~~~~~~~~~p~~l~~p~a~l~g~~~G~~wa~ipg~Lka~f~~nEVIttiMlNyIa 155 (356)
T COG4603 95 GAIAAALVALLFPDLPSWLALPLALLAGAAGGGLWALIPGLLKARFGVNEVITTIMLNYIA 155 (356)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 33333333322222 3333333333333445566888888889999999987777776654
No 13
>PF15284 PAGK: Phage-encoded virulence factor
Probab=48.04 E-value=32 Score=23.26 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=13.0
Q ss_pred cccCCCCCCCCC---CChhhHHHHH
Q 042873 57 KNYRALPKPFWF---PPLWFIHLAT 78 (180)
Q Consensus 57 ~wY~~L~kP~w~---PP~~vF~~vW 78 (180)
+...+-.+|.|+ |+|--||+-|
T Consensus 32 ~~~~~~~~P~wC~lwP~g~~iP~~~ 56 (61)
T PF15284_consen 32 HRKPANIKPVWCDLWPAGIPIPEDW 56 (61)
T ss_pred CCCCcCCCChHHhcCCCCCCCCchH
Confidence 346667788543 6665555544
No 14
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=42.11 E-value=24 Score=25.74 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=22.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCC
Q 042873 23 TKMISAKRAFRSLAFSISVPLSVTLAIICIFGSGKNYRALPKPFWF 68 (180)
Q Consensus 23 ~~~~m~~~~~~~l~~~i~~~~~~g~~~~~~~~~~~wY~~L~kP~w~ 68 (180)
+++.+.-..+..++.++.+-+++-.+--++....+.+..-++|+++
T Consensus 56 ~~~~~~~iili~lls~v~IlVily~IyYFVILRer~~~~~~~p~~~ 101 (101)
T PF06024_consen 56 SKQNNGNIILISLLSFVCILVILYAIYYFVILRERQKSIRNQPSFM 101 (101)
T ss_pred cccccccchHHHHHHHHHHHHHHhhheEEEEEecccccccCCCCcC
Confidence 3444333445555555555444433322223344445555888764
No 15
>PRK10927 essential cell division protein FtsN; Provisional
Probab=40.36 E-value=26 Score=31.07 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042873 32 FRSLAFSISVPLSVTLAIICIF 53 (180)
Q Consensus 32 ~~~l~~~i~~~~~~g~~~~~~~ 53 (180)
.....+++++.+++.++||+++
T Consensus 32 ~~~~m~alAvavlv~fiGGLyF 53 (319)
T PRK10927 32 VSPAMVAIAAAVLVTFIGGLYF 53 (319)
T ss_pred cchHHHHHHHHHHHHHhhheEE
Confidence 4445555555666667777653
No 16
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=35.82 E-value=84 Score=21.12 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=9.8
Q ss_pred CCCCCCCCCchhhhh
Q 042873 12 NNSPTTSHKPETKMI 26 (180)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (180)
+..|.++.|+..|+.
T Consensus 5 ~~p~~~~v~~~~~r~ 19 (62)
T COG4459 5 CQPDVAKVKPSEKRS 19 (62)
T ss_pred cccccccCCcchhhh
Confidence 344557888877664
No 17
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=34.20 E-value=43 Score=28.06 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 042873 30 RAFRSLAFSISVPLSVTLAIICIFGS 55 (180)
Q Consensus 30 ~~~~~l~~~i~~~~~~g~~~~~~~~~ 55 (180)
+.+.++++.|++.+++.++..+|+++
T Consensus 13 N~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 13 NKILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheecC
Confidence 56778888888766665555555543
No 18
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=32.09 E-value=66 Score=26.19 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=24.8
Q ss_pred CcccccccccC---CCCCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 042873 2 ASQALHPLYKN---NSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIF 53 (180)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~~~~~m~~~~~~~l~~~i~~~~~~g~~~~~~~ 53 (180)
..|+-+|++.+ .-+.+-.||.||+- .+|-.+++...+..+-++|.
T Consensus 124 EE~~~~~r~~~V~~~~~~~~sKR~Q~RH-------R~IG~~VlA~~VA~L~~~F~ 171 (215)
T PF05084_consen 124 EEQGTRRRYSSVQEPQAKVPSKRTQKRH-------RLIGAVVLAVSVAMLTWFFL 171 (215)
T ss_pred HhcCCCCCCccccccccccchhHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 44566666653 22334456666554 45555555556666666664
No 19
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=32.06 E-value=1.8e+02 Score=24.28 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=39.1
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHH
Q 042873 119 DPLVLVTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175 (180)
Q Consensus 119 s~lFF~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~ 175 (180)
.+.||+.|.-.+.++....+++.+..+.....+..+..+ +-|.+++.+|+.++.
T Consensus 97 ~h~F~gWh~AvLil~~~s~lf~~lsi~~~iCa~c~~~~a---i~~~v~~~ia~l~S~ 150 (211)
T PF07062_consen 97 THCFFGWHKAVLILISFSMLFALLSICFGICAPCHPSFA---IFYTVLVFIAALLSL 150 (211)
T ss_pred cceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHH---HHHHHHHHHHHHHHH
Confidence 566788888888887777777777777666667777665 667777777777664
No 20
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=29.53 E-value=22 Score=23.65 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=19.9
Q ss_pred cCCCCCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 042873 11 KNNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLA 48 (180)
Q Consensus 11 ~~~~~~~~~~~~~~~~m~~~~~~~l~~~i~~~~~~g~~ 48 (180)
++.-.+.+.|+|.|..|.. ...=+..+++|.++++.
T Consensus 7 ~~~KET~K~K~ERk~~~~e--~~~kv~tVVlP~l~~~~ 42 (56)
T PF15012_consen 7 GKTKETRKQKKERKKEMQE--AQQKVFTVVLPTLAAVF 42 (56)
T ss_pred CCccchHHHHHHHHHHHHH--HHHhheeEehhHHHHHH
Confidence 4555566677777666542 33334455666655543
No 21
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=28.11 E-value=3.6e+02 Score=22.62 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=16.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042873 22 ETKMISAKRAFRSLAFSISVPLSVTLAIIC 51 (180)
Q Consensus 22 ~~~~~m~~~~~~~l~~~i~~~~~~g~~~~~ 51 (180)
++|+...++-+.-..+.++.+.+++.....
T Consensus 18 ~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~ 47 (233)
T COG0670 18 LGLNTFLRKVYLLLALGLLVTAVGAALAAY 47 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555545566666666666555444443
No 22
>PF14256 YwiC: YwiC-like protein
Probab=27.39 E-value=2.8e+02 Score=21.06 Aligned_cols=64 Identities=20% Similarity=0.049 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCCCccc---hhHHHHHHHHHH
Q 042873 37 FSISVPLSVTLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGGFHAR---SDSLLLYVAQVS 113 (180)
Q Consensus 37 ~~i~~~~~~g~~~~~~~~~~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~~~~~---~~~l~ly~~ql~ 113 (180)
..+++|.+.|.+++ ++..+..+...|...| ++-+. .+.|-+.+.+++ ......|++-.+
T Consensus 9 ~Ml~~P~l~G~~~~----------------~~w~~~~L~~aw~~~y-l~~~p-~~~~~k~r~~~~~~~~~~~~~Yg~~a~ 70 (129)
T PF14256_consen 9 AMLLVPFLLGMAGG----------------PSWAHLPLLLAWLFGY-LAFYP-FLLWLKQRRRRRPRYLKWALIYGAIAL 70 (129)
T ss_pred HHHHHHHHHHHHhc----------------ccHHHHHHHHHHHHHH-HHHHH-HHHHHhcccccchhHHHHHHHHHHHHH
Confidence 44667888887433 2333556677899988 33333 344433322111 234456665555
Q ss_pred hhhhh
Q 042873 114 LSVLW 118 (180)
Q Consensus 114 lN~~W 118 (180)
.-..-
T Consensus 71 ~~~l~ 75 (129)
T PF14256_consen 71 VFGLP 75 (129)
T ss_pred HHHHH
Confidence 44433
No 23
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=26.90 E-value=1.4e+02 Score=17.92 Aligned_cols=7 Identities=14% Similarity=0.207 Sum_probs=2.8
Q ss_pred Cchhhhh
Q 042873 20 KPETKMI 26 (180)
Q Consensus 20 ~~~~~~~ 26 (180)
|++++.+
T Consensus 4 kkKS~fe 10 (35)
T PF13253_consen 4 KKKSTFE 10 (35)
T ss_pred ccccHHH
Confidence 3344433
No 24
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=24.48 E-value=5.3e+02 Score=23.34 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=28.7
Q ss_pred HHHHHHhhhhhhHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhC
Q 042873 108 YVAQVSLSVLWDPLVLV-TGAACLGLVFCVAHFGTLVACYKSFEKVN 153 (180)
Q Consensus 108 y~~ql~lN~~Ws~lFF~-~~~~~la~i~i~~l~~~~~~~~~~f~~i~ 153 (180)
-.+|.++|.....-+|+ ..-.+.|....++-++..+.....+.+.+
T Consensus 176 ~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 176 NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555554444445 66677777777777777777666665554
No 25
>PF04896 AmoC: Ammonia monooxygenase/methane monooxygenase, subunit C; InterPro: IPR006980 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The C subunit from Methylococcus capsulatus str. Bath resides primarily in the membrane and consists of five transmembrane helices. Several conserved residues contribute to a metal binding centre [].; PDB: 1YEW_G 3RFR_K 3RGB_G 3CHX_C.
Probab=23.98 E-value=1.2e+02 Score=25.93 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=31.4
Q ss_pred HHHHhc-CCcccCCC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 042873 49 IICIFG-SGKNYRAL-PKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADG 96 (180)
Q Consensus 49 ~~~~~~-~~~wY~~L-~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~ 96 (180)
+++++- +..|.++. +--+|+|.+++-------+|+.||.++++..+.+
T Consensus 119 aSfFtEQDgsWHQt~iRDT~FTPSHii~FY~s~Pi~i~~g~g~~~ya~TR 168 (251)
T PF04896_consen 119 ASFFTEQDGSWHQTVIRDTDFTPSHIIEFYLSYPIYIIMGVGSFLYARTR 168 (251)
T ss_dssp HTHHHHHHHHHHCCS--SSSTSHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeccCCceeeeeeecCCCChHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 445543 55787764 4577999997432112246889999999987754
No 26
>TIGR03078 CH4_NH3mon_ox_C methane monooxygenase/ammonia monooxygenase, subunit C. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit C of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=23.73 E-value=1.3e+02 Score=25.28 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=32.1
Q ss_pred HHHHhc-CCcccCC-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 042873 49 IICIFG-SGKNYRA-LPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWAD 95 (180)
Q Consensus 49 ~~~~~~-~~~wY~~-L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~ 95 (180)
+++++- +.+|.++ .+.-+|+|.++.---.---+|+.+|.++++..+.
T Consensus 107 aSfFtEQDgswHqt~iRDt~FTPsHi~~fy~s~Piyii~G~~~~~ya~T 155 (229)
T TIGR03078 107 ASFFTEQDGSWHQTIVRDTDFTPSHIIEFYGSYPIYIIMGIASFIYAKT 155 (229)
T ss_pred hhheeeccCceeeeeeecCCCChHHHHHHHhhccHHhhhhhhheeeeec
Confidence 445543 5678766 4567899999854344456788999998876544
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.73 E-value=1.3e+02 Score=20.89 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 042873 35 LAFSISVPLSVTLAIICIFG 54 (180)
Q Consensus 35 l~~~i~~~~~~g~~~~~~~~ 54 (180)
.++.+++++++|+++|++..
T Consensus 6 ail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44778889999999998744
No 28
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=22.68 E-value=1.8e+02 Score=23.84 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=4.3
Q ss_pred CCCChhh
Q 042873 67 WFPPLWF 73 (180)
Q Consensus 67 w~PP~~v 73 (180)
-+|++|+
T Consensus 84 ~CP~~Wi 90 (200)
T PF05473_consen 84 PCPKGWI 90 (200)
T ss_pred CCCccce
Confidence 3677764
No 29
>PF13139 DUF3981: Domain of unknown function (DUF3981)
Probab=22.36 E-value=25 Score=25.76 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.0
Q ss_pred hhHHHHHhHHHHHHHHHHHH
Q 042873 154 PFAKDLVKPCLAWMGFLTMV 173 (180)
Q Consensus 154 ~~Aa~LliPYl~W~~fAt~L 173 (180)
+.+..|++|-+.|++.|.|-
T Consensus 26 k~~~il~ipil~wigiaiye 45 (114)
T PF13139_consen 26 KKSPILFIPILFWIGIAIYE 45 (114)
T ss_pred CcCcEEEEhHHHHHHHHHHH
Confidence 46778999999999999764
No 30
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=21.35 E-value=1.9e+02 Score=22.01 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHHHHH
Q 042873 140 GTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTMVNY 175 (180)
Q Consensus 140 ~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~Ln~ 175 (180)
.....+.....+++|.. .-.||+.|+..-.....
T Consensus 57 ~~~~~~~~~~~~vSRRl--aNl~Yvlwv~a~n~~~l 90 (136)
T PF06423_consen 57 ALYYLLNSYIEPVSRRL--ANLPYVLWVLAFNTFFL 90 (136)
T ss_pred HHHHHHHhCCCchhHHh--cchHHHHHHHHHHHHHH
Confidence 33333334445666653 37899999876655443
No 31
>TIGR00203 cydB cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain.
Probab=20.86 E-value=6.3e+02 Score=22.86 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---Cc------ccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 042873 32 FRSLAFSISVPLSVTLAIICIFGS---GK------NYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWADGG 97 (180)
Q Consensus 32 ~~~l~~~i~~~~~~g~~~~~~~~~---~~------wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~~~ 97 (180)
+...+.+++.|...|.+-+-+.+. ++ .|..---...+|..++-+..-..+|...|- .|+..|..+
T Consensus 121 ~~f~vgSll~p~~lGv~~g~~~~G~~~~~~~~~~~~~~g~~~~ll~Pfsll~Gl~~v~~~~~~GA-~~L~~kt~g 194 (378)
T TIGR00203 121 WGLFIGSLVPPLVFGVAFGNLLQGVPFDFDENLRVHYTGSFFQLLNPFSLLCGVTSLGMCITHGA-MWLQLRTVG 194 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeeccccccccccccccHHhhcCHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence 334566677777777765544322 11 232111123678788888877788877775 688887654
No 32
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.41 E-value=2.5e+02 Score=19.16 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=12.6
Q ss_pred ccccccccCCCCCCCCCchhhhh
Q 042873 4 QALHPLYKNNSPTTSHKPETKMI 26 (180)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (180)
.+.|-......|+..-||+..+.
T Consensus 39 ~~~~ivd~A~~P~~P~~P~~~li 61 (82)
T PF13807_consen 39 SNVRIVDPAIVPDKPVSPKRALI 61 (82)
T ss_pred CCceeccccccCCCCCCCcHHHH
Confidence 34444455566666666655444
Done!