Query 042873
Match_columns 180
No_of_seqs 147 out of 846
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfr_C PMOC; membrane, oxidore 48.5 34 0.0012 28.2 5.7 47 49-95 122-170 (256)
2 3vmt_A Monofunctional glycosyl 29.6 38 0.0013 28.0 3.3 24 3-26 11-34 (263)
3 1yew_C Particulate methane mon 18.9 1.4E+02 0.0047 24.9 4.5 47 49-95 149-197 (289)
4 2k21_A Potassium voltage-gated 16.5 2.1E+02 0.0071 21.3 4.6 65 4-71 27-100 (138)
5 3pe5_A Uncharacterized protein 13.5 40 0.0014 29.6 0.0 50 12-64 14-68 (403)
6 3brd_D Protein LIN-12; protein 10.0 87 0.003 17.1 0.6 9 62-70 12-20 (29)
7 4ev6_A Magnesium transport pro 8.5 8E+02 0.027 19.8 7.5 43 46-95 293-335 (339)
8 3dh4_A Sodium/glucose cotransp 7.3 1.1E+03 0.037 20.4 7.2 22 35-56 454-475 (530)
9 1wjq_A KIAA1798 protein; MBT d 7.2 1.2E+02 0.004 21.6 0.5 11 1-11 61-71 (107)
10 1v54_I STA, cytochrome C oxida 6.9 4.5E+02 0.015 17.2 3.3 32 20-51 6-37 (73)
No 1
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=48.47 E-value=34 Score=28.16 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=31.9
Q ss_pred HHHHhc-CCcccCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 042873 49 IICIFG-SGKNYRALP-KPFWFPPLWFIHLATLSSSFFMSLAAWLVWAD 95 (180)
Q Consensus 49 ~~~~~~-~~~wY~~L~-kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~ 95 (180)
+++++- +..|.++.. --+|+|.+.+---.---+|+.||.++++.-+.
T Consensus 122 aSfFtEQDgsWHQtviRDT~FTPSHIi~FY~s~PiyIi~g~~~~~YarT 170 (256)
T 3rfr_C 122 ASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKT 170 (256)
T ss_dssp HTHHHHHHHHHTTTCCCSSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCceeeEEeecCCCChHHHHHHHHhchHHHHHhHHHHhheec
Confidence 455543 567877754 57799999743323345689999999977654
No 2
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=29.64 E-value=38 Score=28.00 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=0.0
Q ss_pred cccccccccCCCCCCCCCchhhhh
Q 042873 3 SQALHPLYKNNSPTTSHKPETKMI 26 (180)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (180)
|+.+-|+++...+-++-++|+|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~kk~~~~ 34 (263)
T 3vmt_A 11 SSGLVPRGSHMQPVGKPPKKKKSK 34 (263)
T ss_dssp ------------------------
T ss_pred ccCcccCCCcccccCCchhhhhHH
Confidence 445567777777766555555443
No 3
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=18.92 E-value=1.4e+02 Score=24.94 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=31.9
Q ss_pred HHHHhc-CCcccCCC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 042873 49 IICIFG-SGKNYRAL-PKPFWFPPLWFIHLATLSSSFFMSLAAWLVWAD 95 (180)
Q Consensus 49 ~~~~~~-~~~wY~~L-~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~ 95 (180)
+++++- +..|.++. +--+|+|.+.+---.---+|+.||+++++.-+.
T Consensus 149 aSfFtEQDgsWHQtviRDT~FTPSHIi~FY~s~PiyIi~Gv~~~lYArT 197 (289)
T 1yew_C 149 ASYFTEQDGTWHQTIVRDTDFTPSHIIEFYLSYPIYIITGFAAFIYAKT 197 (289)
T ss_dssp HTHHHHHHHHHHHHSCCSSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred heeeecccCceeeeeeecCCCChhHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 455543 55786664 457799999843333445699999999887663
No 4
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=16.51 E-value=2.1e+02 Score=21.25 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=35.0
Q ss_pred ccccccccCCCC---CCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-----CCcccCCCCCCC-CCCCh
Q 042873 4 QALHPLYKNNSP---TTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFG-----SGKNYRALPKPF-WFPPL 71 (180)
Q Consensus 4 ~~~~~~~~~~~~---~~~~~~~~~~~m~~~~~~~l~~~i~~~~~~g~~~~~~~~-----~~~wY~~L~kP~-w~PP~ 71 (180)
|+.+-+++|+++ +..|..|.... -....+++..-...++|++-+++.. +++.|....+-. |.=..
T Consensus 27 ~e~~~~g~n~S~la~r~~~~~~~~~~---ylYIL~vmgffgff~~GImLsYiRSKk~E~s~DPy~~YIe~d~W~ek~ 100 (138)
T 2k21_A 27 QETVQQGGNMSGLARRSPRSGDGKLE---ALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKD 100 (138)
T ss_dssp HHHHHTCCTTSSGGGSCSCCTTCSST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTTTTSCTTTCCSCC
T ss_pred HHHHhcCCCCCCccccCCCCCCCCce---eehHHHHHHHHHHHHHHHHHHHhHhhhccccCCcHHHHHHHHHHHHhh
Confidence 455556666644 33344444433 2245555666667777877777632 234466664444 65443
No 5
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=13.49 E-value=40 Score=29.57 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCCCCCCCchhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCc--c-cCCCCC
Q 042873 12 NNSPTTSHKPETKMISA--KRAFRSLAFSISVPLSVTLAIICIFGSGK--N-YRALPK 64 (180)
Q Consensus 12 ~~~~~~~~~~~~~~~m~--~~~~~~l~~~i~~~~~~g~~~~~~~~~~~--w-Y~~L~k 64 (180)
|-+++..||..-|+... .+..+-.++++++. |+.|...+.... | |++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3pe5_A 14 DISSRSNGKNPFKRSTGRKVSNVIIIILCVVFS---GLGGVIVYAHGLLAGMYQNLDS 68 (403)
T ss_dssp ----------------------------------------------------------
T ss_pred ccccccCCCCchhhhhhccccceEEEEehHHHH---hhhHHHHHHHHHHHHHHhhcCc
Confidence 45555566655554432 22233334444333 333333333333 3 777654
No 6
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=10.00 E-value=87 Score=17.10 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 042873 62 LPKPFWFPP 70 (180)
Q Consensus 62 L~kP~w~PP 70 (180)
.+-|-|+||
T Consensus 12 i~A~vW~PP 20 (29)
T 3brd_D 12 INASVWMPP 20 (29)
T ss_pred ecccccCCC
Confidence 445667776
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=8.50 E-value=8e+02 Score=19.83 Aligned_cols=43 Identities=5% Similarity=-0.193 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCcccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 042873 46 TLAIICIFGSGKNYRALPKPFWFPPLWFIHLATLSSSFFMSLAAWLVWAD 95 (180)
Q Consensus 46 g~~~~~~~~~~~wY~~L~kP~w~PP~~vF~~vW~ily~lmg~a~~lv~~~ 95 (180)
++++|++-.+-+.-..++-| |.|+.++.++- ++++..+..+++
T Consensus 293 T~IaGiyGMNf~~mPel~~~------~gy~~~l~~m~-~~~~~~~~~fkr 335 (339)
T 4ev6_A 293 MWITGIYGMNFSYLPLANNP------QGFWLVMALMV-VIIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHTTCCCSCCTTSSCT------THHHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHhhccCcCCCCCCccCc------hHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45666643233323334333 45666666553 333444444444
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=7.33 E-value=1.1e+03 Score=20.40 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 042873 35 LAFSISVPLSVTLAIICIFGSG 56 (180)
Q Consensus 35 l~~~i~~~~~~g~~~~~~~~~~ 56 (180)
......++.++..+.++++++.
T Consensus 454 ~~~~~~~~~i~~v~vSl~t~~~ 475 (530)
T 3dh4_A 454 MLYTLLFTMVVIAFTSLSTSIN 475 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHhhcCCC
Confidence 3444556666667777777643
No 9
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=7.21 E-value=1.2e+02 Score=21.58 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=8.7
Q ss_pred CCccccccccc
Q 042873 1 MASQALHPLYK 11 (180)
Q Consensus 1 ~~~~~~~~~~~ 11 (180)
++|.+|||.+-
T Consensus 61 ~dSpdIhPVGW 71 (107)
T 1wjq_A 61 ADSPDIHPVGW 71 (107)
T ss_dssp TTCSSCEETTH
T ss_pred CCCCCcccCcH
Confidence 57889998864
No 10
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=6.86 E-value=4.5e+02 Score=17.24 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=19.8
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042873 20 KPETKMISAKRAFRSLAFSISVPLSVTLAIIC 51 (180)
Q Consensus 20 ~~~~~~~m~~~~~~~l~~~i~~~~~~g~~~~~ 51 (180)
||.-|--..++....++++++++++++++--+
T Consensus 6 kPqmrgLl~~~lr~~i~~a~~lsl~~~~~~k~ 37 (73)
T 1v54_I 6 KPQMRGLLARRLRFHIVGAFMVSLGFATFYKF 37 (73)
T ss_dssp CCCCBSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433334555577888888888877755333
Done!