Query 042873
Match_columns 180
No_of_seqs 147 out of 846
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 18:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042873.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042873hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h8pc1 f.14.1.1 (C:22-78) Pot 17.4 95 0.0069 18.0 4.2 49 124-172 4-52 (57)
2 d1nekd_ f.21.2.2 (D:) Succinat 13.4 50 0.0037 21.4 2.3 20 151-170 15-34 (113)
3 d1jb0i_ f.23.17.1 (I:) Subunit 11.9 84 0.0061 16.8 2.5 17 158-174 12-28 (38)
4 d1v54g_ f.23.2.1 (G:) Mitochon 11.5 1.8E+02 0.013 18.1 5.3 17 31-47 15-31 (84)
5 d3deoa1 b.34.13.2 (A:85-128) C 9.2 21 0.0016 20.0 -0.8 15 59-73 22-36 (44)
6 d1q90r_ f.23.12.1 (R:) ISP sub 5.0 2.7E+02 0.02 14.8 3.7 12 27-38 7-18 (39)
7 d1nofa2 c.1.8.3 (A:44-320) Gly 4.9 1.1E+02 0.0078 22.7 1.0 9 65-73 68-76 (277)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 4.7 1.6E+02 0.012 14.3 1.3 7 59-65 18-24 (27)
9 d1c99a_ f.17.1.1 (A:) F1F0 ATP 4.7 2.7E+02 0.02 16.9 2.8 24 126-149 53-76 (79)
10 d1t23a_ d.247.1.1 (A:) Chromos 4.2 1.3E+02 0.0097 19.2 1.0 8 63-70 70-77 (93)
No 1
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.36 E-value=95 Score=17.96 Aligned_cols=49 Identities=20% Similarity=0.004 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHhHHHHHHHHHHH
Q 042873 124 VTGAACLGLVFCVAHFGTLVACYKSFEKVNPFAKDLVKPCLAWMGFLTM 172 (180)
Q Consensus 124 ~~~~~~la~i~i~~l~~~~~~~~~~f~~i~~~Aa~LliPYl~W~~fAt~ 172 (180)
+.|..+.+...+.++......+++..-+-.+...+--+|=..|=++.|.
T Consensus 4 ~~R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~ 52 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETA 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeee
Confidence 4466776666666555555555555555444444446777778777665
No 2
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=13.44 E-value=50 Score=21.42 Aligned_cols=20 Identities=5% Similarity=-0.072 Sum_probs=14.7
Q ss_pred hhChhHHHHHhHHHHHHHHH
Q 042873 151 KVNPFAKDLVKPCLAWMGFL 170 (180)
Q Consensus 151 ~i~~~Aa~LliPYl~W~~fA 170 (180)
-..|..|.+++||..|..+.
T Consensus 15 ~~qRvSAv~l~~l~~~~~~~ 34 (113)
T d1nekd_ 15 ILVRATAIVLTLYIIYMVGF 34 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888887764
No 3
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.90 E-value=84 Score=16.81 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHHHHHH
Q 042873 158 DLVKPCLAWMGFLTMVN 174 (180)
Q Consensus 158 ~LliPYl~W~~fAt~Ln 174 (180)
+.++|...|+..+....
T Consensus 12 wI~iPvv~wl~p~vvMg 28 (38)
T d1jb0i_ 12 WIFIPVVCWLMPTVVMG 28 (38)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 67899999998886554
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.53 E-value=1.8e+02 Score=18.15 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042873 31 AFRSLAFSISVPLSVTL 47 (180)
Q Consensus 31 ~~~~l~~~i~~~~~~g~ 47 (180)
.|+++.+++++|.++-.
T Consensus 15 lWkkis~~va~P~i~l~ 31 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALC 31 (84)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58888888888876643
No 5
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.21 E-value=21 Score=20.04 Aligned_cols=15 Identities=20% Similarity=0.694 Sum_probs=11.1
Q ss_pred cCCCCCCCCCCChhh
Q 042873 59 YRALPKPFWFPPLWF 73 (180)
Q Consensus 59 Y~~L~kP~w~PP~~v 73 (180)
++.=..|+|.|++.+
T Consensus 22 WkD~h~pSWvP~~~I 36 (44)
T d3deoa1 22 WKDGHSPSWVPSSYI 36 (44)
T ss_dssp ETTCCCCEEEEGGGS
T ss_pred eccCCCCCcCCHHHH
Confidence 355568999999864
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.05 E-value=2.7e+02 Score=14.82 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=6.2
Q ss_pred hhhhhHHHHHHH
Q 042873 27 SAKRAFRSLAFS 38 (180)
Q Consensus 27 m~~~~~~~l~~~ 38 (180)
|.||.+.+++.+
T Consensus 7 MgrR~~MNLll~ 18 (39)
T d1q90r_ 7 MNKRNIMNLILA 18 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 344555555554
No 7
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase, catalytic domain {Erwinia chrysanthemi [TaxId: 556]}
Probab=4.86 E-value=1.1e+02 Score=22.68 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=7.1
Q ss_pred CCCCCChhh
Q 042873 65 PFWFPPLWF 73 (180)
Q Consensus 65 P~w~PP~~v 73 (180)
-+|.||.|+
T Consensus 68 spWSpP~wM 76 (277)
T d1nofa2 68 TPWSPPAYM 76 (277)
T ss_dssp ECSCCCGGG
T ss_pred cCCCCcHHH
Confidence 469999985
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.70 E-value=1.6e+02 Score=14.29 Aligned_cols=7 Identities=29% Similarity=0.895 Sum_probs=3.2
Q ss_pred cCCCCCC
Q 042873 59 YRALPKP 65 (180)
Q Consensus 59 Y~~L~kP 65 (180)
|++.++|
T Consensus 18 yqqykrp 24 (27)
T d2e74g1 18 YQQYKRP 24 (27)
T ss_dssp HHHTTSC
T ss_pred HHHhcCC
Confidence 4444444
No 9
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=4.69 E-value=2.7e+02 Score=16.94 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 042873 126 GAACLGLVFCVAHFGTLVACYKSF 149 (180)
Q Consensus 126 ~~~~la~i~i~~l~~~~~~~~~~f 149 (180)
=-++.|++|.+.+...++.+...|
T Consensus 53 m~ig~al~Ea~~i~~lvialillF 76 (79)
T d1c99a_ 53 FFIVMGLVDAIPMIAVGLGLYVMF 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678889988888888777655
No 10
>d1t23a_ d.247.1.1 (A:) Chromosomal protein MC1 {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=4.20 E-value=1.3e+02 Score=19.22 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q 042873 63 PKPFWFPP 70 (180)
Q Consensus 63 ~kP~w~PP 70 (180)
++|.|+|-
T Consensus 70 ~~P~Wmp~ 77 (93)
T d1t23a_ 70 NRPAWMPE 77 (93)
T ss_dssp CCCSSCCS
T ss_pred CCcccCcc
Confidence 67888885
Done!