Query 042874
Match_columns 167
No_of_seqs 215 out of 1069
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 6.8E-22 1.5E-26 167.6 18.1 137 14-152 18-160 (358)
2 TIGR00688 rarD rarD protein. T 99.8 4.6E-18 9.9E-23 137.1 16.6 131 14-148 7-142 (256)
3 PRK11272 putative DMT superfam 99.8 2.8E-17 6.1E-22 135.3 17.9 127 14-148 13-141 (292)
4 PF00892 EamA: EamA-like trans 99.8 1.8E-17 3.9E-22 118.1 12.0 124 19-147 1-125 (126)
5 PRK15430 putative chlorampheni 99.8 3.5E-17 7.7E-22 135.0 15.4 129 15-148 14-145 (296)
6 PRK11689 aromatic amino acid e 99.7 8.3E-17 1.8E-21 132.7 14.6 129 9-148 2-137 (295)
7 TIGR00950 2A78 Carboxylate/Ami 99.7 1.7E-16 3.7E-21 127.3 14.5 118 21-148 1-119 (260)
8 PRK11453 O-acetylserine/cystei 99.7 1.6E-15 3.4E-20 125.2 16.5 122 14-148 9-132 (299)
9 TIGR00817 tpt Tpt phosphate/ph 99.6 6.3E-14 1.4E-18 115.6 17.4 127 16-146 5-135 (302)
10 TIGR00950 2A78 Carboxylate/Ami 99.6 4.2E-13 9.1E-18 107.6 16.7 129 10-144 127-260 (260)
11 PTZ00343 triose or hexose phos 99.5 6.8E-13 1.5E-17 112.3 17.0 128 14-147 50-185 (350)
12 COG2510 Predicted membrane pro 99.5 7E-14 1.5E-18 101.8 9.4 130 15-147 9-138 (140)
13 TIGR03340 phn_DUF6 phosphonate 99.5 7.5E-13 1.6E-17 108.3 15.9 128 15-148 7-135 (281)
14 PRK10532 threonine and homoser 99.5 8.4E-13 1.8E-17 108.8 14.6 121 14-148 17-137 (293)
15 PF13536 EmrE: Multidrug resis 99.5 2.5E-13 5.4E-18 97.3 9.8 106 43-151 2-109 (113)
16 PRK10532 threonine and homoser 99.4 1.4E-11 3E-16 101.6 18.4 132 12-150 149-283 (293)
17 PRK11272 putative DMT superfam 99.4 2.1E-11 4.6E-16 100.3 17.0 134 10-148 149-285 (292)
18 COG0697 RhaT Permeases of the 99.3 1.1E-10 2.3E-15 93.8 16.3 131 15-150 13-145 (292)
19 PRK11689 aromatic amino acid e 99.3 1.4E-10 3E-15 95.7 16.1 129 12-148 157-287 (295)
20 PLN00411 nodulin MtN21 family 99.3 2.2E-10 4.8E-15 97.4 17.4 132 15-150 195-330 (358)
21 PRK11453 O-acetylserine/cystei 99.3 6E-10 1.3E-14 92.0 17.9 136 11-148 143-287 (299)
22 TIGR00817 tpt Tpt phosphate/ph 99.2 2.2E-10 4.8E-15 94.5 11.9 138 11-150 145-295 (302)
23 PF06027 DUF914: Eukaryotic pr 99.1 3.4E-09 7.5E-14 89.4 15.5 128 22-151 26-154 (334)
24 PRK15430 putative chlorampheni 99.1 4.5E-09 9.8E-14 86.7 14.5 131 14-148 154-285 (296)
25 COG2962 RarD Predicted permeas 99.1 5.1E-09 1.1E-13 85.9 14.5 139 11-152 7-148 (293)
26 TIGR03340 phn_DUF6 phosphonate 99.1 7.6E-10 1.6E-14 90.6 9.5 130 11-145 144-280 (281)
27 PF03151 TPT: Triose-phosphate 99.0 3.7E-08 8.1E-13 73.0 14.7 130 15-146 6-151 (153)
28 PTZ00343 triose or hexose phos 98.9 7.7E-08 1.7E-12 81.5 16.8 131 15-148 200-348 (350)
29 COG0697 RhaT Permeases of the 98.9 1.3E-07 2.9E-12 75.8 17.0 131 11-149 154-288 (292)
30 TIGR00776 RhaT RhaT L-rhamnose 98.9 5.3E-08 1.2E-12 80.4 13.0 126 15-150 7-138 (290)
31 PRK15051 4-amino-4-deoxy-L-ara 98.8 1E-07 2.2E-12 68.4 10.2 69 79-148 40-109 (111)
32 KOG4510 Permease of the drug/m 98.7 2.3E-09 5E-14 87.3 -1.3 122 20-148 48-169 (346)
33 TIGR00776 RhaT RhaT L-rhamnose 98.6 1.7E-06 3.7E-11 71.5 12.9 122 15-148 158-288 (290)
34 COG5006 rhtA Threonine/homoser 98.5 2.5E-06 5.4E-11 69.2 12.9 124 15-144 154-278 (292)
35 PRK02971 4-amino-4-deoxy-L-ara 98.5 1.3E-06 2.8E-11 64.3 9.7 70 78-148 50-122 (129)
36 PF08449 UAA: UAA transporter 98.4 2.4E-05 5.2E-10 64.8 16.2 125 23-153 14-141 (303)
37 PF06027 DUF914: Eukaryotic pr 98.2 2.6E-05 5.7E-10 65.9 12.9 138 10-152 167-309 (334)
38 PF04142 Nuc_sug_transp: Nucle 98.1 4.4E-05 9.5E-10 61.9 9.9 80 71-151 13-92 (244)
39 TIGR00688 rarD rarD protein. T 98.0 0.00026 5.6E-09 56.9 13.6 104 15-122 152-255 (256)
40 PF08449 UAA: UAA transporter 98.0 0.00035 7.6E-09 57.8 14.5 134 16-150 161-299 (303)
41 PRK10452 multidrug efflux syst 98.0 0.00013 2.8E-09 53.1 9.8 70 80-150 34-105 (120)
42 COG5006 rhtA Threonine/homoser 98.0 0.00029 6.3E-09 57.4 12.7 108 27-148 30-137 (292)
43 KOG2765 Predicted membrane pro 97.9 1.1E-05 2.4E-10 68.6 4.6 74 86-160 170-244 (416)
44 PRK09541 emrE multidrug efflux 97.6 0.001 2.2E-08 47.7 10.1 68 81-149 35-104 (110)
45 KOG2234 Predicted UDP-galactos 97.6 0.0065 1.4E-07 51.5 16.3 132 15-148 21-164 (345)
46 COG2962 RarD Predicted permeas 97.5 0.011 2.3E-07 49.1 15.9 126 19-148 158-283 (293)
47 KOG4510 Permease of the drug/m 97.5 4.2E-05 9.1E-10 62.8 1.3 135 22-161 204-338 (346)
48 PRK10650 multidrug efflux syst 97.4 0.0064 1.4E-07 43.5 12.1 64 83-147 42-107 (109)
49 COG2076 EmrE Membrane transpor 97.4 0.0019 4E-08 46.0 9.1 68 80-148 34-103 (106)
50 KOG1441 Glucose-6-phosphate/ph 97.4 0.00076 1.7E-08 56.7 8.0 140 9-151 161-310 (316)
51 PF04657 DUF606: Protein of un 97.4 0.0091 2E-07 44.3 12.9 105 37-145 29-138 (138)
52 PRK11431 multidrug efflux syst 97.3 0.0033 7.1E-08 44.7 9.4 65 83-148 36-102 (105)
53 PF05653 Mg_trans_NIPA: Magnes 97.3 0.00038 8.3E-09 58.1 5.1 74 78-152 52-126 (300)
54 KOG1441 Glucose-6-phosphate/ph 97.1 0.013 2.7E-07 49.4 12.1 123 24-148 32-177 (316)
55 KOG3912 Predicted integral mem 97.1 0.0054 1.2E-07 50.9 9.4 125 22-148 16-158 (372)
56 PF00893 Multi_Drug_Res: Small 97.0 0.0036 7.9E-08 43.2 6.9 56 82-138 35-92 (93)
57 KOG4314 Predicted carbohydrate 96.8 0.00055 1.2E-08 54.1 1.8 61 86-147 64-124 (290)
58 PF10639 UPF0546: Uncharacteri 96.3 0.0078 1.7E-07 43.4 4.8 106 17-145 4-111 (113)
59 KOG1580 UDP-galactose transpor 96.3 0.0089 1.9E-07 48.6 5.6 76 72-148 238-313 (337)
60 PF06800 Sugar_transport: Suga 96.0 0.15 3.3E-06 42.0 11.5 120 15-144 144-267 (269)
61 TIGR00803 nst UDP-galactose tr 95.8 0.093 2E-06 41.3 9.0 60 85-145 162-221 (222)
62 KOG2922 Uncharacterized conser 95.7 0.0046 1E-07 51.9 1.2 80 78-159 66-146 (335)
63 KOG1444 Nucleotide-sugar trans 95.6 0.18 4E-06 42.3 10.4 138 11-149 157-301 (314)
64 KOG1444 Nucleotide-sugar trans 95.4 0.56 1.2E-05 39.4 12.5 122 24-149 27-150 (314)
65 PRK13499 rhamnose-proton sympo 95.2 1.4 3E-05 37.6 14.8 123 26-149 198-342 (345)
66 KOG2766 Predicted membrane pro 95.1 0.001 2.2E-08 54.4 -4.4 104 37-148 47-150 (336)
67 KOG2765 Predicted membrane pro 95.0 0.34 7.4E-06 41.8 10.2 131 17-150 255-392 (416)
68 KOG1581 UDP-galactose transpor 95.0 0.19 4E-06 42.2 8.4 112 34-148 198-313 (327)
69 COG3238 Uncharacterized protei 94.6 0.67 1.4E-05 35.0 10.0 108 37-147 33-145 (150)
70 KOG1443 Predicted integral mem 94.5 0.028 6E-07 47.2 2.5 131 15-148 18-156 (349)
71 COG5070 VRG4 Nucleotide-sugar 94.1 1.1 2.4E-05 36.4 10.6 126 24-150 170-298 (309)
72 PRK13499 rhamnose-proton sympo 93.1 2.1 4.5E-05 36.6 11.5 130 15-148 13-153 (345)
73 PF06800 Sugar_transport: Suga 93.0 1.5 3.3E-05 36.2 10.1 77 72-148 42-122 (269)
74 KOG1443 Predicted integral mem 88.4 10 0.00022 32.2 10.9 108 37-146 196-313 (349)
75 KOG1582 UDP-galactose transpor 86.9 4.5 9.8E-05 33.9 7.9 112 35-147 217-331 (367)
76 KOG1580 UDP-galactose transpor 84.2 3.4 7.4E-05 33.9 5.9 77 79-157 89-166 (337)
77 KOG4831 Unnamed protein [Funct 81.8 2.5 5.3E-05 30.3 3.7 57 89-146 66-123 (125)
78 KOG1581 UDP-galactose transpor 81.7 20 0.00043 30.3 9.6 106 37-150 50-157 (327)
79 COG4975 GlcU Putative glucose 80.3 1.9 4.1E-05 35.4 3.1 105 34-148 177-285 (288)
80 KOG3912 Predicted integral mem 77.5 30 0.00066 29.2 9.4 128 20-148 187-334 (372)
81 COG1742 Uncharacterized conser 74.6 19 0.00041 25.6 6.4 33 115-148 72-104 (109)
82 COG4975 GlcU Putative glucose 71.9 2.3 4.9E-05 35.0 1.5 120 17-145 10-133 (288)
83 PF04342 DUF486: Protein of un 70.7 36 0.00077 24.3 8.8 68 78-146 32-106 (108)
84 PF02694 UPF0060: Uncharacteri 69.1 7.5 0.00016 27.7 3.4 36 112-148 68-103 (107)
85 KOG1442 GDP-fucose transporter 68.9 7.6 0.00016 32.5 3.9 129 22-151 198-330 (347)
86 PF07857 DUF1632: CEO family ( 66.7 33 0.00072 28.1 7.3 126 15-152 6-138 (254)
87 PRK02237 hypothetical protein; 60.2 60 0.0013 23.2 11.2 35 113-148 71-105 (109)
88 KOG1583 UDP-N-acetylglucosamin 56.5 17 0.00037 30.5 3.9 112 35-149 191-315 (330)
89 COG3086 RseC Positive regulato 55.9 35 0.00076 25.7 5.1 53 95-148 68-122 (150)
90 PF04246 RseC_MucC: Positive r 55.5 27 0.0006 25.2 4.6 28 96-123 62-89 (135)
91 PRK10862 SoxR reducing system 54.3 31 0.00067 25.9 4.7 29 95-123 68-96 (154)
92 PF05961 Chordopox_A13L: Chord 50.2 26 0.00055 22.9 3.2 31 132-162 6-39 (68)
93 PF11139 DUF2910: Protein of u 47.8 1.3E+02 0.0028 23.3 11.1 39 109-147 160-210 (214)
94 PF05653 Mg_trans_NIPA: Magnes 47.3 36 0.00077 28.4 4.5 71 78-148 214-292 (300)
95 KOG3817 Uncharacterized conser 46.2 1.4E+02 0.003 26.1 7.8 88 17-111 197-287 (452)
96 PF04142 Nuc_sug_transp: Nucle 44.3 1.7E+02 0.0036 23.5 13.4 113 20-137 125-242 (244)
97 KOG2766 Predicted membrane pro 36.3 88 0.0019 26.2 5.0 131 10-148 165-299 (336)
98 PF08802 CytB6-F_Fe-S: Cytochr 33.5 77 0.0017 18.4 3.1 30 68-97 4-34 (39)
99 TIGR00803 nst UDP-galactose tr 31.4 55 0.0012 25.4 3.1 41 104-145 7-47 (222)
100 PF06379 RhaT: L-rhamnose-prot 31.0 2.4E+02 0.0051 24.3 6.9 123 22-148 20-153 (344)
101 PHA03049 IMV membrane protein; 27.7 99 0.0021 20.1 3.2 21 132-152 6-26 (68)
102 KOG2922 Uncharacterized conser 27.7 2.4E+02 0.0052 24.1 6.3 66 86-151 237-309 (335)
103 COG5070 VRG4 Nucleotide-sugar 26.2 3E+02 0.0064 22.7 6.4 115 26-147 23-139 (309)
104 PF08370 PDR_assoc: Plant PDR 25.3 36 0.00078 22.0 0.9 31 72-102 25-57 (65)
105 PRK11103 PTS system mannose-sp 22.9 2E+02 0.0044 23.9 5.1 32 105-137 237-268 (282)
106 COG3610 Uncharacterized conser 21.8 3.6E+02 0.0078 20.3 7.8 44 40-91 4-48 (156)
107 TIGR00828 EIID-AGA PTS system, 21.2 2.3E+02 0.005 23.4 5.0 32 105-137 227-258 (271)
108 PF11177 DUF2964: Protein of u 20.7 2.4E+02 0.0053 18.0 5.8 37 106-143 15-51 (62)
109 COG3169 Uncharacterized protei 20.6 3.2E+02 0.007 19.3 12.3 68 78-146 39-113 (116)
110 PRK11056 hypothetical protein; 20.5 3.4E+02 0.0075 19.7 6.4 69 70-148 7-81 (120)
111 KOG1442 GDP-fucose transporter 20.1 43 0.00093 28.2 0.5 115 26-142 45-168 (347)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.89 E-value=6.8e-22 Score=167.65 Aligned_cols=137 Identities=38% Similarity=0.614 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042874 14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGY 93 (167)
Q Consensus 14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~ 93 (167)
+++.-.++++..++.|.+++.|++|+.++++|+.+|+++++|+++.+ +|+++.++.++++|..+.++|++|+.++.+++
T Consensus 18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~-~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~ 96 (358)
T PLN00411 18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT-NRSRSLPPLSVSILSKIGLLGFLGSMYVITGY 96 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677799999999999999999999999999999999999998765 33222134467888999999999866778999
Q ss_pred HHhhccchHHHHHHhhhHHHHHHHHHHHH------hhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874 94 IGIAYSSPTLSAAITNTIPAFTFTLAILF------SCLKMMSWIEIIIIIIINNDTLTSKMDKAA 152 (167)
Q Consensus 94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~------~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~ 152 (167)
+|++||+|++|+++.+++|++++++++++ ++||++ +++++|++++++|+.++..++|+
T Consensus 97 ~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~-~~~~~G~~l~~~Gv~ll~~~~g~ 160 (358)
T PLN00411 97 IGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSS-VAKVMGTILSLIGALVVIFYHGP 160 (358)
T ss_pred HHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhccccc-HHHHHHHHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999 599994 99999999999999998876664
No 2
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.79 E-value=4.6e-18 Score=137.12 Aligned_cols=131 Identities=11% Similarity=0.007 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCC----cCCCCCHHH-HHHHHHHHHHHHHH
Q 042874 14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTT----VVPPFKFSL-LLRIFLLSSIGVLS 88 (167)
Q Consensus 14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~----~~~~~~~~~-~~~l~~lgl~g~~~ 88 (167)
++.+..+||.+.+++|. .+ ++||.++.++|+++|++++.++...+ ++++ +.++.++++ +..+...|++++.+
T Consensus 7 ~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 83 (256)
T TIGR00688 7 SLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLF-RQWAALIERLKRIQKRPLILSLLLCGLLIGFN 83 (256)
T ss_pred HHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 46788899999999998 44 49999999999999998887776443 2211 101122233 34455666666889
Q ss_pred HHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 89 QTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 89 ~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+.+++++++++++++|+++.++.|+++++++++++|||++ +++++|++++++|+.++..
T Consensus 84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~-~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERIS-RFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 9999999999999998764
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.77 E-value=2.8e-17 Score=135.27 Aligned_cols=127 Identities=12% Similarity=0.140 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHH
Q 042874 14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVG 92 (167)
Q Consensus 14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~ 92 (167)
++....+||.+++++|.+++ ++||.+++++|+.+|+++++++...+ |++. .+++++.....+|.++ +.++.++
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~~---~~~~~~~~~~~~g~~~~~~~~~~~ 86 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHPL---PTLRQWLNAALIGLLLLAVGNGMV 86 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCCC---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999987 59999999999999999998887653 2222 2567888889999998 8889999
Q ss_pred HHHh-hccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 93 YIGI-AYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 93 ~~gl-~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+++. +++++++++++.++.|+++.+++.+ +|||++ +++++|++++++|+.++..
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~-~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTR-KLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCc-hhHHHHHHHHHHhHHHHhc
Confidence 9999 9999999999999999999999986 699995 9999999999999988754
No 4
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.75 E-value=1.8e-17 Score=118.08 Aligned_cols=124 Identities=20% Similarity=0.271 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 042874 19 KAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGYIGIA 97 (167)
Q Consensus 19 ~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~ 97 (167)
.+||.+.++.|...++ .||....++|+..+++ ++++.... +++.. ...+.+++......|.++ ...+.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-ccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 3699999999999876 9999999999999997 66655554 33332 456788889999999998 999999999999
Q ss_pred ccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874 98 YSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 98 ~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
+++++.++.+.++.|+++.++++++++|+++ +.+++|+++++.|+++++
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~-~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPS-WRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 999999999999998864
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.75 E-value=3.5e-17 Score=134.99 Aligned_cols=129 Identities=8% Similarity=-0.042 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc-CCC-CCHHHHHHHHHHHHHH-HHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV-VPP-FKFSLLLRIFLLSSIG-VLSQTV 91 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~-~~~-~~~~~~~~l~~lgl~g-~~~~~~ 91 (167)
+.+..+||.+++++|.. . ++||.++.++|+++|.+++.++...+ ++... ..+ .+++++. ....+.++ +.++.+
T Consensus 14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (296)
T PRK15430 14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKIF-MLAVSAVLIGGNWLL 89 (296)
T ss_pred HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHH
Confidence 56778999999999985 4 59999999999999998888876553 21110 000 1234433 34477777 899999
Q ss_pred HHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 92 GYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 92 ~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+++|++++++++++++.++.|+++.+++++++|||++ +++++|++++++|+.++..
T Consensus 90 ~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~-~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 90 FIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFR-RMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999995 9999999999999998764
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.73 E-value=8.3e-17 Score=132.74 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=103.8
Q ss_pred cchhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-
Q 042874 9 DEKDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG- 85 (167)
Q Consensus 9 ~~k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g- 85 (167)
+.|+++ +.++.+||++++.+|.++++ +||..++++|+.+|++++.++. .+++ .+++ ++.....+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~----~~~~----~~~~-~~~~~~~~~l~~ 71 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV----GFPR----LRQF-PKRYLLAGGLLF 71 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc----cccc----cccc-cHHHHHHHhHHH
Confidence 456664 56788999999999999875 9999999999999999988762 1111 1112 22334556667
Q ss_pred HHHHHHHHHHhhc----cchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 86 VLSQTVGYIGIAY----SSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 86 ~~~~~~~~~gl~~----tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+.++.+++.|++| +++++++++.++.|+++.+++++++|||++ +++++|++++++|+.++..
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~-~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKAN-WLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhHhheec
Confidence 8888888888764 578899999999999999999999999995 9999999999999988864
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.72 E-value=1.7e-16 Score=127.31 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 042874 21 IRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGYIGIAYS 99 (167)
Q Consensus 21 wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~~t 99 (167)
||.+++.+|.++++..||....+.|++.+.+++.++... + . +++++......|.++ +.++.+++.|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999877999999999999998888776432 2 1 345677888999999 99999999999999
Q ss_pred chHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 100 SPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 100 sa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
++++++++.++.|+++.+++.+++|||++ +++++|++++++|+.++..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~-~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPR-KLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCc-HHHHHHHHHHHHhHHhhcc
Confidence 99999999999999999999999999995 9999999999999988764
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.69 E-value=1.6e-15 Score=125.24 Aligned_cols=122 Identities=10% Similarity=0.038 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHH
Q 042874 14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVG 92 (167)
Q Consensus 14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~ 92 (167)
.+++..+||.+++++|.++++ +||..++++|+.++++.++++. + .+ +. + +..+...|++. ..++.++
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~-~~-~~----~---~~~~~~~g~~~~~~~~~~~ 76 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--A-RP-KV----P---LNLLLGYGLTISFGQFAFL 76 (299)
T ss_pred HHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--c-CC-CC----c---hHHHHHHHHHHHHHHHHHH
Confidence 366788999999999999975 9999999999999887766553 1 11 11 1 22345567766 6677788
Q ss_pred HHHhhc-cchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 93 YIGIAY-SSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 93 ~~gl~~-tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+.+++| .++++++++.++.|+++.+++++++|||++ +++++|++++++|+.++..
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~-~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQ-GKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHhHHHhcc
Confidence 899998 588999999999999999999999999995 9999999999999988863
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.61 E-value=6.3e-14 Score=115.60 Aligned_cols=127 Identities=10% Similarity=0.034 Sum_probs=104.7
Q ss_pred HHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042874 16 KQIKAI----RNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTV 91 (167)
Q Consensus 16 ~~~~~w----g~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~ 91 (167)
..+..| .+..+.-|+++++--+|..++++|+.++++.+.+. +.. ..+++ ++.++++|+.++.+|++++.++.+
T Consensus 5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSS-GLPKR-LKISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHh-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344555 33446789999764689999999999998776655 211 12222 456789999999999999777899
Q ss_pred HHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874 92 GYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 92 ~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
.++|++|+++++++++.+++|+++.++++++++||++ +++++|++++++|+.+.
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~-~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFP-STLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999995 99999999999999765
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.55 E-value=4.2e-13 Score=107.63 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=108.8
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH
Q 042874 10 EKDDI--IKQIKAIRNLEQLFKAASSKGLS--YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG 85 (167)
Q Consensus 10 ~k~~~--~~~~~~wg~~~i~~K~al~~~~~--p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g 85 (167)
.++++ +.+..+|+.+.+..|...++ .+ +..+..+|+.++++++.|+.+.. ++.. ..+.++|..++.+|+++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFL-GPNP---QALSLQWGALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhc-CCCC---CcchHHHHHHHHHHHHH
Confidence 45664 56778999999999998754 56 45566678999999999887764 3222 23677888899999999
Q ss_pred -HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHH
Q 042874 86 -VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTL 144 (167)
Q Consensus 86 -~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~ 144 (167)
...+.+|++++++++++.++.+.++.|+++.++++++++|+++ ..+++|..+.+.|++
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~-~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLS-LPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999995 999999999999873
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.53 E-value=6.8e-13 Score=112.27 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=103.1
Q ss_pred HHHHHHHH----HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCC--CHHHHHHHHHHHHHH-
Q 042874 14 IIKQIKAI----RNLEQLFKAASSKGLS-YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPF--KFSLLLRIFLLSSIG- 85 (167)
Q Consensus 14 ~~~~~~~w----g~~~i~~K~al~~~~~-p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~--~~~~~~~l~~lgl~g- 85 (167)
....+..| ..+.+..|.++++ +| |+.++.+|+++++++...+... ..+++ ++. .+++++.++.+|+++
T Consensus 50 ~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 50 LALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT--GFRKI-PRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh--CCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 34555566 3355789999976 89 9999999999998766554332 22222 333 346889999999999
Q ss_pred HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874 86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
.. +...+.|+++++++.+.++.++.|++++++++++++||++ +++++|++++++|+.+.+
T Consensus 126 ~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s-~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 126 FV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLN-LYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHhee
Confidence 55 5557799999999999999999999999999999999995 999999999999999876
No 12
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.53 E-value=7e-14 Score=101.85 Aligned_cols=130 Identities=13% Similarity=0.046 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYI 94 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~ 94 (167)
++....||...+++|+.++ ++||..-++.|......++..+.+.. ++.+.+...++|.|..+.+.|+-+...-.+||.
T Consensus 9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ 86 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT-GNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFR 86 (140)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc-CceecccccCcceehhhhHHHHHHHHHHHHHHH
Confidence 4455688999999999996 59999999999999998888887775 433322346788999999999877889999999
Q ss_pred HhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874 95 GIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 95 gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
+++.-.++...-+..+.|+++.++++++++||++ ..+++|+++..+|+++++
T Consensus 87 ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls-~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 87 ALKKGKASRVVPLDKTSVVLAVLLSILFLGERLS-LPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHhcCCcceEEEcccccHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999995 999999999999998765
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.52 E-value=7.5e-13 Score=108.34 Aligned_cols=128 Identities=11% Similarity=0.049 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGY 93 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~ 93 (167)
+++..+|+...+.+|...++ -++ ..++++..+++++.|+...+..+..+ +.. +++++.....+.++ ..++.+++
T Consensus 7 ~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 7 VFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGW-SRL-PATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCC-CCc-chhhHHHHHHHHHHHHHHHHHHH
Confidence 45777999999999976654 344 35888888888888877653012222 222 34445555666666 99999999
Q ss_pred HHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 94 IGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
.|++++++++++.+.++.|+++.++++++++||++ +++++|+.+++.|+.++..
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~-~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLS-PLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999995 9999999999999998764
No 14
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.49 E-value=8.4e-13 Score=108.81 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042874 14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGY 93 (167)
Q Consensus 14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~ 93 (167)
+..+..+|+.+.+++|.++++ +||..+.++|+.+|+++++++... ++ .+.++++++..+..|++....+.+++
T Consensus 17 ~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~---~~---~~~~~~~~~~~~~~g~~~~~~~~~~~ 89 (293)
T PRK10532 17 LLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP---WR---LRFAKEQRLPLLFYGVSLGGMNYLFY 89 (293)
T ss_pred HHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH---Hh---ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999986 999999999999999998876432 11 12356788888888887766778899
Q ss_pred HHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 94 IGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
++++|++++.++++.++.|+++.+++ +||+ . +..++.++++|+.++..
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~-~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRP-V--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCCh-H--HHHHHHHHHHHHheeee
Confidence 99999999999999999999998876 3555 2 34677889999988753
No 15
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.49 E-value=2.5e-13 Score=97.32 Aligned_cols=106 Identities=20% Similarity=0.257 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCc-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHH
Q 042874 43 GYSYPLATLALLPLIFIFPSTTTV-VPPFKFSLLLRIFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAI 120 (167)
Q Consensus 43 ~~R~~~A~liL~~~~~~~~~~~~~-~~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~ 120 (167)
.+|+..+.+++..+...+ ++.+. ....+++++.++...|+++ ..++.++++|+++++ +..+.+.+++|+++.+++.
T Consensus 2 a~r~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIR-GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHH-ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 689999999998887764 32211 0223446677788889999 799999999999999 4888999999999999999
Q ss_pred HHhhcccCchhHHHHHHHHHHHHHHHHhcCC
Q 042874 121 LFSCLKMMSWIEIIIIIIINNDTLTSKMDKA 151 (167)
Q Consensus 121 ~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g 151 (167)
+++|||++ ++++.|++++++|+.++...+.
T Consensus 80 ~~~~er~~-~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 80 LFFKERLS-PRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHHHHHhhhhc
Confidence 99999995 9999999999999999986443
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.45 E-value=1.4e-11 Score=101.56 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=108.0
Q ss_pred hhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHH
Q 042874 12 DDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLS 88 (167)
Q Consensus 12 ~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~ 88 (167)
|++ +.+..+|+.+.+..|...+ +.+|...... ..++++++.|+.... .. . ...+...|..++.+|+++ .+.
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~-~~-~--~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQ-AG-E--ALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHc-cC-c--ccCCHHHHHHHHHHHHHHHHHH
Confidence 553 5577899999999999865 4788877544 466677777776653 22 1 223455666678999999 899
Q ss_pred HHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 89 QTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 89 ~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
+.+|++++++.+|+.++.+.++.|+++.++++++++|+++ ..+++|.++.+.|++......
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~-~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLT-LIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999995 999999999999999987654
No 17
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.41 E-value=2.1e-11 Score=100.35 Aligned_cols=134 Identities=11% Similarity=-0.002 Sum_probs=110.8
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-H
Q 042874 10 EKDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-V 86 (167)
Q Consensus 10 ~k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~ 86 (167)
.+|++ +++..+|+.+.+..|..- . -++....+++..+++.++.++.... +.... ...+.++|..+.++|+++ .
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLS-GERLT-ALPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHc-CCccc-ccCCHHHHHHHHHHHHHHHH
Confidence 35664 456779999999999964 3 2456677899999999888877653 22211 123567888999999999 8
Q ss_pred HHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 87 ~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+.+.+|++++++.++++++.+.++.|++++++++++++|+++ ..+++|.++.+.|+++...
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t-~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLS-PIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 9999999999999998865
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=93.81 Aligned_cols=131 Identities=19% Similarity=0.256 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGY 93 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~ 93 (167)
+.....|+.+....|...++..++....+.|+..+..++.+.... ++... . ...+++.+....+.++ ..++.+++
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (292)
T COG0697 13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGL-R-PALRPWLLLLLLALLGLALPFLLLF 88 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccc-c-ccccchHHHHHHHHHHHHHHHHHHH
Confidence 445568999999999987654677777788999998885544332 21111 1 1222255677888888 99999999
Q ss_pred HHhhccchHHHHHHhhhHHHHHHHHHH-HHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 94 IGIAYSSPTLSAAITNTIPAFTFTLAI-LFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 94 ~gl~~tsa~~asii~~l~Pv~~~ila~-~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
.++++++++.++.+.++.|+++.+++. ++++||++ ++++.|+++++.|++++...+
T Consensus 89 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~Gv~lv~~~~ 145 (292)
T COG0697 89 LALKYTSASVASLIIGLLPLFTALLAVLLLLGERLS-LLQILGILLALAGVLLILLGG 145 (292)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHhHHheecCC
Confidence 999999999999999999999999997 77799995 999999999999999987643
No 19
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.31 E-value=1.4e-10 Score=95.71 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=100.0
Q ss_pred hhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHH
Q 042874 12 DDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQ 89 (167)
Q Consensus 12 ~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~ 89 (167)
|++ +.+..+|+.+.+..|...+ +.+|..... ..+++.+.+..... +... ...+.+.|..+++.|+...+.+
T Consensus 157 G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~-~~~~--~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 157 SYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS-PQPA--MVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh-cCcc--ccCCHHHHHHHHHHHHHHHHHH
Confidence 554 5678899999999999754 478876532 33444444433332 2111 2345677888887775338899
Q ss_pred HHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 90 TVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 90 ~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
.+|++++++++|++++.+.++.|++..++++++++|+++ ..+++|.++.+.|+++...
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~-~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLS-FSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999995 9999999999999988765
No 20
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.30 E-value=2.2e-10 Score=97.41 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHccCCCCc---CCCCCHHHHHHHHHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSY-YVFVGYSYPLATLALLPLIFIFPSTTTV---VPPFKFSLLLRIFLLSSIGVLSQT 90 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p-~~l~~~R~~~A~liL~~~~~~~~~~~~~---~~~~~~~~~~~l~~lgl~g~~~~~ 90 (167)
+.+..+|+.+.++.|..... .|| ...+++...++++.+.+..... ++... ....+.. ...+++.|+...+.+.
T Consensus 195 l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~i~y~~i~t~lay~ 271 (358)
T PLN00411 195 TIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV-EKNNPSVWIIHFDIT-LITIVTMAIITSVYYV 271 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH-ccCCcccceeccchH-HHHHHHHHHHHHHHHH
Confidence 44667899999999997764 544 4667787777777666555543 32211 0111222 3335556654466888
Q ss_pred HHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 91 VGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 91 ~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
+|++++++.+|+.++++.++.|++++++++++++|+++ ..+++|.++.+.|+.+....+
T Consensus 272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt-~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLY-LGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999995 999999999999999987643
No 21
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.27 E-value=6e-10 Score=91.99 Aligned_cols=136 Identities=9% Similarity=0.080 Sum_probs=103.4
Q ss_pred hhhH--HHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHccCCCCc----CCCCCHHHHHHHHHHH
Q 042874 11 KDDI--IKQIKAIRNLEQLFKAASSKG--LSYYVFVGYSYPLATLALLPLIFIFPSTTTV----VPPFKFSLLLRIFLLS 82 (167)
Q Consensus 11 k~~~--~~~~~~wg~~~i~~K~al~~~--~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~----~~~~~~~~~~~l~~lg 82 (167)
+||+ +.+..+|+.+.+..|...++. .+......+-..++.+.+.+..... +.... ....+.++|..++++|
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHHH
Confidence 5774 557779999999999965432 2233444555555544444333332 22110 0134677899999999
Q ss_pred HHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 83 SIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 83 l~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+++ .+.+.+|+.++++.+|++++.+.++.|++..++++++++|+++ ..+++|.++.+.|+.+...
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~-~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLT-GLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHhc
Confidence 999 8999999999999999999999999999999999999999995 9999999999999987654
No 22
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.20 E-value=2.2e-10 Score=94.46 Aligned_cols=138 Identities=14% Similarity=0.066 Sum_probs=103.5
Q ss_pred hhhH--HHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCC--------CCHHHHHH-H
Q 042874 11 KDDI--IKQIKAIRNLEQLFKAASSK-GLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPP--------FKFSLLLR-I 78 (167)
Q Consensus 11 k~~~--~~~~~~wg~~~i~~K~al~~-~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~--------~~~~~~~~-l 78 (167)
.|++ +.+..+|+.+.+..|...++ +.||..+..+....+++.+.|+.... +.....+. ........ .
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT-EGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHhhcccCchHHHHHH
Confidence 3664 55778999999999997751 48999999999999999999987754 32110000 00001111 2
Q ss_pred HHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 79 FLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 79 ~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
+..+... ...+.+++.++++++|+++++..++.|+++.++++++++|+++ ..+++|.+++++|+.+....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt-~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKIS-PQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCc-hhHHHHHHHHHHHHHHHHHHh
Confidence 2333323 4445677899999999999999999999999999999999995 999999999999999987643
No 23
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.12 E-value=3.4e-09 Score=89.35 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 042874 22 RNLEQLFKAASSKGLS-YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSS 100 (167)
Q Consensus 22 g~~~i~~K~al~~~~~-p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~ts 100 (167)
.++...+...-+.|.+ |..-.++-+..-+++..+...+++.+++. .+..+++|+..+++|++-...+++.+.|++||+
T Consensus 26 ~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~-~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs 104 (334)
T PF06027_consen 26 TGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKW-LKVLKRPWWKYFLLALLDVEANYLVVLAYQYTS 104 (334)
T ss_pred HhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccc-hhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5555556555555554 65555666655556666665554122222 233456788888899877889999999999999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCC
Q 042874 101 PTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKA 151 (167)
Q Consensus 101 a~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g 151 (167)
.+.+.++..+.-.++++++++++|||.+ +.+++|++++++|+.++...+.
T Consensus 105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~-~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 105 VTSVQLLDCTSIPFVMILSFIFLKRRYS-WFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HhHHHhhhhhhhHHHHHHHHHHHHhhhh-HHHHHHHHHHHhhhhheeeecc
Confidence 9999999999999999999999999995 9999999999999988876543
No 24
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.08 E-value=4.5e-09 Score=86.73 Aligned_cols=131 Identities=13% Similarity=0.022 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042874 14 IIKQIKAIRNLEQLFKAASSKG-LSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVG 92 (167)
Q Consensus 14 ~~~~~~~wg~~~i~~K~al~~~-~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~ 92 (167)
.+++..+|+.+.+..|...++. .++.....+-..++...+.+.... ..... .......+..+...|+.+.+.+.++
T Consensus 154 ~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~t~i~~~~~ 230 (296)
T PRK15430 154 ALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS--STSHM-GQNPMSLNLLLIAAGIVTTVPLLCF 230 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC--Ccccc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999964321 233444455555554443332110 11000 1111222344445565448899999
Q ss_pred HHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 93 YIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 93 ~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
++++++.+|+.++.+.++.|++..++++++++|+++ ..+++|.++.+.|+.++..
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~-~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPG-ADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999888765
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.08 E-value=5.1e-09 Score=85.90 Aligned_cols=139 Identities=13% Similarity=0.000 Sum_probs=110.0
Q ss_pred hhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCHHHHHHHHHHHHHHHH
Q 042874 11 KDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV-VPPFKFSLLLRIFLLSSIGVL 87 (167)
Q Consensus 11 k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~-~~~~~~~~~~~l~~lgl~g~~ 87 (167)
||.+ .++-..||..+...|.. + ..|+.++...|...+..+++.+....++++.. ....+++.+..+.+.++.-+.
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~ 84 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL 84 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 5554 55777999999999995 4 49999999999999988877766654122211 011234455555555555577
Q ss_pred HHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874 88 SQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAA 152 (167)
Q Consensus 88 ~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~ 152 (167)
+-..|.++.+.-..-++|+=.+++|++.++++.+++|||++ +.|++.+.++.+||.......|+
T Consensus 85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls-~~Q~iAV~lA~~GV~~~~~~~g~ 148 (293)
T COG2962 85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLS-RLQWIAVGLAAAGVLIQTWLLGS 148 (293)
T ss_pred HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 88899999999999999999999999999999999999995 99999999999999998776555
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.08 E-value=7.6e-10 Score=90.57 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=91.6
Q ss_pred hhh--HHHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHH
Q 042874 11 KDD--IIKQIKAIRNLEQLFKAASSKGLSYY----VFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSI 84 (167)
Q Consensus 11 k~~--~~~~~~~wg~~~i~~K~al~~~~~p~----~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 84 (167)
+++ .+.+..+|+.+.+..|...+ +.+|. ....+.+...++.+.+..... +++. .......+..+...+.+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR-HGRS--MFPYARQILPSATLGGL 219 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH-hccc--hhhhHHHHHHHHHHHHH
Confidence 455 25567789999999998643 34443 233333333322222222221 1111 11123345566777777
Q ss_pred H-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 042874 85 G-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLT 145 (167)
Q Consensus 85 g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~l 145 (167)
+ ...+.+|++++++.+++.++.+.++.|++..++++++++|+++ ..+++|.++.+.|+.+
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~-~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWY-LTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhHHh
Confidence 7 8899999999999999999999999999999999999999995 9999999999999875
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.99 E-value=3.7e-08 Score=72.99 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCC---CC-------CHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSK------GLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVP---PF-------KFSLLLRI 78 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~------~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~---~~-------~~~~~~~l 78 (167)
..+..+.+...+..|..+++ ..+|.++..+-...+++++.|..... ++.+... .. ..+.+..+
T Consensus 6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T PF03151_consen 6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLSSFFSEIFGEELSSDPNFIFLL 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhhhcchHHHHHHH
Confidence 34556778899999998876 69999999999999999999998876 4322100 00 22445556
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874 79 FLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 79 ~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
+..|+++...+...+..++++||...++..+.-.+.+.+++.++++|+++ ..+++|+++++.|+...
T Consensus 85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t-~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPIT-PLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCC-HHHHHHHHHHHHHHhee
Confidence 66777778899999999999999999999999999999999999999995 99999999999999764
No 28
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.94 E-value=7.7e-08 Score=81.50 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCC-------CCCHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSK------GLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVP-------PFKFSLLLRIFLL 81 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~------~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~-------~~~~~~~~~l~~l 81 (167)
..+..+|+.+.+..|..+++ ..++..+..+-..+++++++|+.... +...... ..+...+..++.
T Consensus 200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~l~- 277 (350)
T PTZ00343 200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTNYTKGIIIF- 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccccchHHHHH-
Confidence 44677999999999998753 26677777777889999999987744 3211000 000111112222
Q ss_pred HHHH-HHHHHHH----HHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 82 SSIG-VLSQTVG----YIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 82 gl~g-~~~~~~~----~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
.++. .+.+.++ |.++++++|.++++..++-|+++.++++++++|+++ ..+++|.++++.|+.+.+.
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt-~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVT-LLGYLGMAVAILGALLYSL 348 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCc-hHhHHHHHHHHHHHHHHhh
Confidence 2222 4444444 469999999999999999999999999999999995 9999999999999998765
No 29
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.93 E-value=1.3e-07 Score=75.81 Aligned_cols=131 Identities=16% Similarity=0.125 Sum_probs=103.0
Q ss_pred hhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-H
Q 042874 11 KDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVG-YSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-V 86 (167)
Q Consensus 11 k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~-~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~ 86 (167)
++++ +.+..+|+.+.+..|... ..++..... +.+..+.....+.... .++ . ..+.+++..+...|+++ .
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS--GFG-A--PILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc--ccc-c--cCCHHHHHHHHHHHHHHHH
Confidence 4554 557779999999999876 367777777 5554333333333221 111 1 34578899999999999 7
Q ss_pred HHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874 87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD 149 (167)
Q Consensus 87 ~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~ 149 (167)
..+.+++++++..+++.++.+..+.|++..++++++++|+++ ..+++|.++.+.|+.+....
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~-~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLS-PAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999995 99999999999999888653
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.87 E-value=5.3e-08 Score=80.44 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFK-FSLLLRIFLLSSIGVLSQTVGY 93 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~-~~~~~~l~~lgl~g~~~~~~~~ 93 (167)
+.+..+||.+.+..|... +.+|.++. |..++++++..+.... + + ++.+ ++.+..-++.|.+=...|.+|+
T Consensus 7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~-~---~~~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-V-L---PEFWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-h-C---CcccccHHHHHHHHHHHHHHhhhhhHH
Confidence 346679999999999964 68887775 7888888776655543 2 1 1112 2222222233332267889999
Q ss_pred HHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhH----HHHHHHHHHHHHHHHhcC
Q 042874 94 IGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIE----IIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 94 ~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~----~~Gi~l~~~Gv~li~~~~ 150 (167)
.++++++.+.|-.+.+ +.|+++.+.+.+++||+.+ +++ ++|+++++.|+.++...+
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t-~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWST-SIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHhHheEEecc
Confidence 9999999999998888 8899999999999999994 888 999999999998876543
No 31
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.78 E-value=1e-07 Score=68.43 Aligned_cols=69 Identities=6% Similarity=-0.128 Sum_probs=62.7
Q ss_pred HHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 79 FLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 79 ~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
...++++ ...++++..++++.+.+.|..+.++.|+++.++++++++||++ .+|++|+.+.++|++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls-~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVS-PRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhc
Confidence 3445577 8899999999999999999999999999999999999999995 9999999999999988753
No 32
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.67 E-value=2.3e-09 Score=87.32 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042874 20 AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYS 99 (167)
Q Consensus 20 ~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~t 99 (167)
.+.++.++.+..++ .+|.+....|++.-.++-.|...++ ......|+ ..| .++++=|+.|+......|++++|.
T Consensus 48 ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~-~~~v~gp~-g~R--~~LiLRg~mG~tgvmlmyya~~~m 121 (346)
T KOG4510|consen 48 FFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYY-MQPVIGPE-GKR--KWLILRGFMGFTGVMLMYYALMYM 121 (346)
T ss_pred HHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEE-eeeeecCC-CcE--EEEEeehhhhhhHHHHHHHHHhhc
Confidence 33555555555553 6999999999877777777765553 22111111 122 234566777744455678899999
Q ss_pred chHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 100 SPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 100 sa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+-+.|++|+...|++|.+++++++|||. ++.+.+|..+.+.||++++.
T Consensus 122 slaDA~vItFssPvft~ifaw~~LkE~~-t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 122 SLADAVVITFSSPVFTIIFAWAFLKEPF-TKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred chhheEEEEecChHHHHHHHHHHHcCCC-cHHHHHHHHHhhheEEEEec
Confidence 9999999999999999999999999999 59999999999999999875
No 33
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.56 E-value=1.7e-06 Score=71.49 Aligned_cols=122 Identities=13% Similarity=-0.074 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYP----LATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQT 90 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~----~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~ 90 (167)
+.+-..|+.+.+..|.. +.||.+.++.... .+.+++.+. + +. + +. ..+.....++.|++-.+.+.
T Consensus 158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~--~-~~-~~~~~~~~~~~Gi~~~ia~~ 226 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---I-LA--K-PL-KKYAILLNILPGLMWGIGNF 226 (290)
T ss_pred HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---h-cc--c-ch-HHHHHHHHHHHHHHHHHHHH
Confidence 44556889999999975 3799988555554 444343332 1 11 1 22 23334444457776677788
Q ss_pred HHHHHhh-ccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHH----HHHHHHHHHHHHHHh
Q 042874 91 VGYIGIA-YSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEI----IIIIIINNDTLTSKM 148 (167)
Q Consensus 91 ~~~~gl~-~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~----~Gi~l~~~Gv~li~~ 148 (167)
+|+.+.+ +.+++.++++.+..|+...+.+.++++|+.+ ++++ +|.++.+.|+.+...
T Consensus 227 ~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~-~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 227 FYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKT-KREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCC-cceeehhHHHHHHHHHHHHHHhc
Confidence 8999999 9999999999999999999999999999995 8999 999999999988764
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.54 E-value=2.5e-06 Score=69.21 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGY 93 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~ 93 (167)
..+-.+|+.|-+.+|.+-+. .+--.-...-+.+|+++.+|+.... -.. .-.++.-...-+..|+++ .+++.+..
T Consensus 154 l~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~--ag~--~l~~p~ll~laLgvavlSSalPYsLEm 228 (292)
T COG5006 154 LGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ--AGP--ALFSPSLLPLALGVAVLSSALPYSLEM 228 (292)
T ss_pred HHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh--cch--hhcChHHHHHHHHHHHHhcccchHHHH
Confidence 44667999999999998643 4556667788999999999997753 211 123455566667888999 99999999
Q ss_pred HHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHH
Q 042874 94 IGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTL 144 (167)
Q Consensus 94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~ 144 (167)
.+++..++..-++++++.|.+.++.++++++|++ +..||+|+...++++.
T Consensus 229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~l-s~~qwlaI~~ViaAsa 278 (292)
T COG5006 229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETL-TLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 5999999988887664
No 35
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.51 E-value=1.3e-06 Score=64.32 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=64.6
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHH--HhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 78 IFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAIL--FSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 78 l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~--~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
.+++|+.+ ...+.+|..++++.+++.|.-+.+..|+++.+.++. +++|+++ ..|++|+++.++|++++..
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls-~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS-LKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHhcc
Confidence 57889999 999999999999999999999999999988888874 8999995 9999999999999999875
No 36
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.42 E-value=2.4e-05 Score=64.82 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=97.2
Q ss_pred HHHHHHHHHHh-CCCC--HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042874 23 NLEQLFKAASS-KGLS--YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYS 99 (167)
Q Consensus 23 ~~~i~~K~al~-~~~~--p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~t 99 (167)
.+-+.-+.... ++.. |..+++.+++..+++-.+..... +++ +.++..+...+..+++-.+...+-+.+++|.
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF--KFP---KSRKIPLKKYAILSFLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc--ccc---CCCcChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555443 3344 89999999999988776665543 211 2234446677778877788889999999999
Q ss_pred chHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCCC
Q 042874 100 SPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAAS 153 (167)
Q Consensus 100 sa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~~ 153 (167)
|-..-.++-+..|+.+++++.+++++|.+ +++++++++..+|+.+....+.+.
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~-~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYS-RRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCcccc-HHHHHHHHHHHhhHheeeeccccc
Confidence 99999999999999999999999999995 999999999999999987755443
No 37
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.25 E-value=2.6e-05 Score=65.94 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=102.1
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCC--CHHHHHHHHHHHHHH
Q 042874 10 EKDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPF--KFSLLLRIFLLSSIG 85 (167)
Q Consensus 10 ~k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~--~~~~~~~l~~lgl~g 85 (167)
-|||+ +.+..+||.+.+.-|....+ .|+..+...=-+++.++..+..... |++.. ... +.+....++.. .++
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i-~~~~w~~~~~~~~v~~-~~~ 242 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL-ERSGI-ESIHWTSQVIGLLVGY-ALC 242 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhh-hccCCChhhHHHHHHH-HHH
Confidence 36785 45666899999999998875 7888877777777777777666655 55443 223 33333322222 223
Q ss_pred -HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874 86 -VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAA 152 (167)
Q Consensus 86 -~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~ 152 (167)
...+.+....+++++|+...+=.-+...+.+++..++.+++++ +..++|.++.+.|.++....+.+
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~-~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFS-WLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCcccc-HHHHHHHHHHHHHhheEEccCCc
Confidence 5666677889999999988777778899999999999999995 99999999999999998764433
No 38
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.05 E-value=4.4e-05 Score=61.87 Aligned_cols=80 Identities=9% Similarity=0.227 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 71 KFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 71 ~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
++++...+.+=+++-+..+.+.|.++++.+|+.-.++.++-.++|++++++++|+|+ +++||+++.+.+.|+.++....
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~l-s~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRL-SRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHccc-chhhHHHHHHHHHHHheeecCC
Confidence 456777777777777889999999999999999999999999999999999999999 5999999999999999876543
Q ss_pred C
Q 042874 151 A 151 (167)
Q Consensus 151 g 151 (167)
.
T Consensus 92 ~ 92 (244)
T PF04142_consen 92 S 92 (244)
T ss_pred c
Confidence 3
No 39
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.01 E-value=0.00026 Score=56.92 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYI 94 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~ 94 (167)
+++..+|+.+.+..|..-+. ++......... ...+..+..... ...........++|..++.+|+++...+.++++
T Consensus 152 l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~ 227 (256)
T TIGR00688 152 LVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPVAIYYLLQT-DFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI 227 (256)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHHHHHHHHHh-ccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56777999999999996432 33332222221 111111111111 111000111235788888888876789999999
Q ss_pred HhhccchHHHHHHhhhHHHHHHHHHHHH
Q 042874 95 GIAYSSPTLSAAITNTIPAFTFTLAILF 122 (167)
Q Consensus 95 gl~~tsa~~asii~~l~Pv~~~ila~~~ 122 (167)
|+++.+|+.++.+.++.|+++.+++.+.
T Consensus 228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 228 AANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998753
No 40
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.99 E-value=0.00035 Score=57.83 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH--ccCCCCc--CCCCCHHHHHHHHHHHHHHHHHHH
Q 042874 16 KQIKAIRNLEQLFKAASS-KGLSYYVFVGYSYPLATLALLPLIFI--FPSTTTV--VPPFKFSLLLRIFLLSSIGVLSQT 90 (167)
Q Consensus 16 ~~~~~wg~~~i~~K~al~-~~~~p~~l~~~R~~~A~liL~~~~~~--~~~~~~~--~~~~~~~~~~~l~~lgl~g~~~~~ 90 (167)
....+-|...+..+..++ .+.+|.+..++-..++.+++.+.... .++-.+. .....+..+..++...+.++..+.
T Consensus 161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~ 240 (303)
T PF08449_consen 161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQF 240 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455888888888874 56899999999999998888777665 2111110 001123456667777777777777
Q ss_pred HHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 91 VGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 91 ~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
+.+.-.+..+|...+++..+--+++.+++.++++++++ ..+|+|+++.+.|..+....+
T Consensus 241 ~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~-~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 241 FIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLS-PLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCC-hHHHHHHHHhHHHHHHHHHhh
Confidence 77788999999999999999999999999999999995 999999999999999877644
No 41
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.96 E-value=0.00013 Score=53.14 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=59.9
Q ss_pred HHHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 80 LLSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 80 ~lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
...+.+ ...++++..++++.+.+.|=.+ ..+.-+.+.+++.++++|+++ ..|++|+.+.++|++.+...+
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s-~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS-LMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhhcCC
Confidence 345666 8888999999999999998554 568888999999999999995 999999999999999886533
No 42
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00029 Score=57.38 Aligned_cols=108 Identities=13% Similarity=0.008 Sum_probs=84.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 042874 27 LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAA 106 (167)
Q Consensus 27 ~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asi 106 (167)
+.|..... +.|...+.+|..+++++++++.. .++ .+.++++|..+...|..-...|.+||.+++..+=+.+..
T Consensus 30 ~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~R---Pwr---~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVA 102 (292)
T COG5006 30 FAKSLFPL-VGAAGVTALRLAIAALILLALFR---PWR---RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVA 102 (292)
T ss_pred HHHHHccc-cChhhHHHHHHHHHHHHHHHHhh---HHH---hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 56666664 89999999999999999988743 222 346789999999999877888899999999999999999
Q ss_pred HhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 107 ITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 107 i~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+-++-|+.+.+++ .+| .+..+=+.+++.|..++.-
T Consensus 103 iEF~GPL~vA~~~----sRr---~~d~vwvaLAvlGi~lL~p 137 (292)
T COG5006 103 IEFTGPLAVALLS----SRR---LRDFVWVALAVLGIWLLLP 137 (292)
T ss_pred hhhccHHHHHHHh----ccc---hhhHHHHHHHHHHHHhhee
Confidence 9999999766543 233 2345566678888877754
No 43
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.94 E-value=1.1e-05 Score=68.59 Aligned_cols=74 Identities=16% Similarity=0.325 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCC-CCCCCCCCc
Q 042874 86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKA-ASTNCPPSE 160 (167)
Q Consensus 86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g-~~~~~~~~~ 160 (167)
...++.++.++.+|+.+..+++.++.-+||..++.++..||++ ..|++++.++++|+++++.++. +..+.++++
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft-~sKllav~~si~GViiVt~~~s~~~~~~~a~~ 244 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFT-LSKLLAVFVSIAGVIIVTMGDSKQNSDLPASR 244 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhh-HHHHHHHHHhhccEEEEEeccccccccCCccc
Confidence 7899999999999999999999999999999999999999995 9999999999999999887543 223444444
No 44
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.63 E-value=0.001 Score=47.66 Aligned_cols=68 Identities=18% Similarity=0.047 Sum_probs=58.4
Q ss_pred HHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874 81 LSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD 149 (167)
Q Consensus 81 lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~ 149 (167)
..+.+ ...++++..++++.+-+.|=.+ ..+.-+.+.++++++++|+++ ..+++|+.+.++|++.+...
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~-~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD-LPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhcC
Confidence 45666 7888889999999999888544 667888889999999999995 99999999999999998653
No 45
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.0065 Score=51.49 Aligned_cols=132 Identities=10% Similarity=0.072 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHccCCC---CcCCCC------CHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKG---LSYYVFVGYSYPLATLALLPLIFIFPSTT---TVVPPF------KFSLLLRIFLLS 82 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~---~~p~~l~~~R~~~A~liL~~~~~~~~~~~---~~~~~~------~~~~~~~l~~lg 82 (167)
+..+..+++..+..|+.-..+ +.|.+..+.-=.+-.++.....+.. +|+ +....+ .+++...+.+=+
T Consensus 21 ~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa 99 (345)
T KOG2234|consen 21 IVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETLKVSVPA 99 (345)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHHHHHHHH
Confidence 446667899999999987655 6777777777776666555554442 211 110111 234455555556
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 83 SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 83 l~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
++-++.+.++|.++.+.+|++-.+..++--+-|+++..+++++|++ +.||..+++-++|+.++..
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs-~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLS-RLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhc
Confidence 6667777799999999999999999999999999999999999995 9999999999999999873
No 46
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.53 E-value=0.011 Score=49.10 Aligned_cols=126 Identities=11% Similarity=-0.001 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042874 19 KAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAY 98 (167)
Q Consensus 19 ~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~ 98 (167)
..|+.|..+=|.. ++|+.+=...-...-...-+...++.....+....-+.+++..+...|...+++-.+|..|-+.
T Consensus 158 ~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~ 234 (293)
T COG2962 158 LSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKR 234 (293)
T ss_pred HHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3667777666663 3666654444444433333333333211111001124667888889999989999999999999
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 99 SSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 99 tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
.+=+.-+++++..|.+.++++.++++|+++ ..|...-+..-.|..+.+.
T Consensus 235 lpls~~G~lqYi~Ptl~fllav~i~~E~~~-~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 235 LPLSTLGFLQYIEPTLMFLLAVLIFGEPFD-SDQLVTFAFIWLALALFSI 283 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 8999998888888877664
No 47
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.48 E-value=4.2e-05 Score=62.76 Aligned_cols=135 Identities=15% Similarity=0.066 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 042874 22 RNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSP 101 (167)
Q Consensus 22 g~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa 101 (167)
++.+++.|+.=. ..+.+....|=..++.+.-+..+... . +.. .+..++||+.+..+|++|.+.|.+.-.|+|.--|
T Consensus 204 asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~i-g-~~~-lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErA 279 (346)
T KOG4510|consen 204 ASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASI-G-AVQ-LPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERA 279 (346)
T ss_pred hhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhc-c-cee-cCccccceEEEEEehhhhhHHHHHHHHHhhhhcc
Confidence 556677776422 34444444444444433322222221 2 111 2346788888999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 042874 102 TLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNCPPSEE 161 (167)
Q Consensus 102 ~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~ 161 (167)
+-.+++.++.-++.++...++++|-++ ++.|.|.++.+...+..+..+..-.|..+++|
T Consensus 280 Gpvaim~~~dvvfAf~wqv~ff~~~Pt-~ws~~Ga~~vvsS~v~~a~~kwa~~~e~s~k~ 338 (346)
T KOG4510|consen 280 GPVAIMTYTDVVFAFFWQVLFFGHWPT-IWSWVGAVMVVSSTVWVALKKWAGTNESSLKK 338 (346)
T ss_pred CCeehhhHHHHHHHHHHHHHHhcCCCh-HHHhhceeeeehhHHHHHHHHHhccchhhHHH
Confidence 999999999999999999999999995 99999999988888887765544334333443
No 48
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.44 E-value=0.0064 Score=43.49 Aligned_cols=64 Identities=8% Similarity=-0.063 Sum_probs=55.9
Q ss_pred HHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874 83 SIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 83 l~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
+.+ ...+++...++++.+.+.| ++-....-+.+.+.+.++++|+++ ..|++|+.+.+.|++.+.
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~-~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN-RKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHhc
Confidence 445 7888899999999999988 555668888899999999999995 999999999999998864
No 49
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.0019 Score=46.00 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHHHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 80 LLSSIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 80 ~lgl~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
++.+.+ ...+.++-.++++.+-+.| ++-...--+.+.+.++++++|+++ ..|++|+.+.++|++.+..
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~-~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS-LIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC-HHHHHHHHHHHHHHHHhhh
Confidence 344556 7888899999999999988 566778889999999999999995 9999999999999988765
No 50
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.40 E-value=0.00076 Score=56.70 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=102.4
Q ss_pred cchhhHHH--HHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHH-HHHHHccCCCCc---CC-CCCHHHHHHH
Q 042874 9 DEKDDIIK--QIKAIRNLEQLFKAAS---SKGLSYYVFVGYSYPLATLALL-PLIFIFPSTTTV---VP-PFKFSLLLRI 78 (167)
Q Consensus 9 ~~k~~~~~--~~~~wg~~~i~~K~al---~~~~~p~~l~~~R~~~A~liL~-~~~~~~~~~~~~---~~-~~~~~~~~~l 78 (167)
+..|.+.+ .+...+...++.|..+ .+.+|++.+..+.--++...++ |+.... +.... .. ..+.. ...+
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~-~~~~ 238 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVT-FLIL 238 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchh-hHHH
Confidence 44555444 3345577889999988 3459999999999999999999 887663 32211 01 12222 3334
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCC
Q 042874 79 FLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKA 151 (167)
Q Consensus 79 ~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g 151 (167)
.+.+++....|..-|+.+..|||-+=++....==+++...++++++|+++ ..+..|..+++.|+.+..-.+.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt-~~n~~G~~iai~Gv~~Y~~~k~ 310 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVT-FLNALGYAIAILGVFLYSRAKL 310 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCc-hhhHHHHHHHHHHHHHHHHHhh
Confidence 44555447788889999999999998888876666777788888888994 9999999999999999876443
No 51
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.40 E-value=0.0091 Score=44.32 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHH-HH
Q 042874 37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPA-FT 115 (167)
Q Consensus 37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv-~~ 115 (167)
||+.-++.-+..+.+++..+.... +++.. ...+..+|+ ...=|++|..+-.+..+..+..+++.+..+.-+.=+ ..
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~-~~~~~-~~~~~~p~w-~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s 105 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLIT-GRPSL-ASLSSVPWW-AYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIAS 105 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh-ccccc-chhccCChH-HhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 699999999999999888887765 33222 223323343 344788888888888999999999999877665444 44
Q ss_pred HHHHHH----HhhcccCchhHHHHHHHHHHHHHH
Q 042874 116 FTLAIL----FSCLKMMSWIEIIIIIIINNDTLT 145 (167)
Q Consensus 116 ~ila~~----~~~Er~~~~~~~~Gi~l~~~Gv~l 145 (167)
.++.++ .-++++ +..|++|+++.++|+.+
T Consensus 106 l~iD~fG~fg~~~~~~-~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 106 LLIDHFGLFGAPKRPF-SLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHccccCCCCCCC-CHHHHHHHHHHHHHHhC
Confidence 555653 255667 48999999999999863
No 52
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.33 E-value=0.0033 Score=44.67 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=56.9
Q ss_pred HHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 83 SIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 83 l~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+.+ ...+++...++++.+.+.| ++-..+--+.+.+++.++++|+++ ..|++|+.+.+.|++.+..
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~-~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS-PARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHhhhc
Confidence 556 8888899999999999888 555668888999999999999995 9999999999999988754
No 53
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.30 E-value=0.00038 Score=58.06 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=63.4
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874 78 IFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAA 152 (167)
Q Consensus 78 l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~ 152 (167)
..+.|+.- ...+.+.+.++.+.+++.-+-+..+.=++.++++..+++||++ +..+.|+.+++.|+.++.....+
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~-~~~~~G~~l~i~G~~liv~~~~~ 126 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLT-RRDIVGCALIILGSVLIVIFAPK 126 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccch-HhHHhhHHHHHhhheeeEEeCCC
Confidence 44566666 6677788899999999999999999999999999999999995 99999999999999887764433
No 54
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.11 E-value=0.013 Score=49.44 Aligned_cols=123 Identities=16% Similarity=0.089 Sum_probs=95.2
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 042874 24 LEQLFKAASS--KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSP 101 (167)
Q Consensus 24 ~~i~~K~al~--~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa 101 (167)
..+.-|..++ +.--|..++..+.+.+.+.+....... ..+.. +..++..|..++.+|++-++...+-+.++.|.+.
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~V 109 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPV 109 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccch
Confidence 3356788887 556789999998888877666554442 22221 2224566888899999888888999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccC---------------------chhHHHHHHHHHHHHHHHHh
Q 042874 102 TLSAAITNTIPAFTFTLAILFSCLKMM---------------------SWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 102 ~~asii~~l~Pv~~~ila~~~~~Er~~---------------------~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+..-.+=++.|.+++++++++.+|+.+ ..-.+.|.+.++++...-+.
T Consensus 110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al 177 (316)
T KOG1441|consen 110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFAL 177 (316)
T ss_pred hHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 22567888888888765444
No 55
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.07 E-value=0.0054 Score=50.92 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHHHHHHHHccCCCCcC--CC----CCHH---HHHH-HHHHHHH
Q 042874 22 RNLEQLFKAASS---KGLS----YYVFVGYSYPLATLALLPLIFIFPSTTTVV--PP----FKFS---LLLR-IFLLSSI 84 (167)
Q Consensus 22 g~~~i~~K~al~---~~~~----p~~l~~~R~~~A~liL~~~~~~~~~~~~~~--~~----~~~~---~~~~-l~~lgl~ 84 (167)
+.|.+.+|++=+ +|.| |+.-+..-|+.=.+++..+.+.+ .|...+ .. +..+ .+.. +++.=.+
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir-~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal 94 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR-LRSNGQGVSSDLDSILSQDSSPFNPVLFLPPAL 94 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCcccccccccccccCCCCcceecChHH
Confidence 447889999743 3433 66666666666667777766654 322210 00 0001 1111 1222233
Q ss_pred H-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 85 G-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 85 g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
. .....+.|.|+.+|+|+.--.+-...-+|+.+++.-+++.++. .+||+|+.....|.+.+..
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~-~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTIT-GRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccc-hhhHHHHHHHHhhhheeee
Confidence 4 6667788999999999999999999999999999999999995 9999999999999988754
No 56
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.02 E-value=0.0036 Score=43.25 Aligned_cols=56 Identities=13% Similarity=-0.007 Sum_probs=35.0
Q ss_pred HHHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHH
Q 042874 82 SSIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIII 138 (167)
Q Consensus 82 gl~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l 138 (167)
.+.+ ...++++..++++.+.+.| ++...+..+.+.+.+.++++|+++ ..|++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s-~~~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS-LSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHhheee
Confidence 4446 7888899999999999999 666779999999999999999995 999999875
No 57
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=96.85 E-value=0.00055 Score=54.15 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874 86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
++.++.|..+++..+|+.++.+..+.-.|+.+++++.+++|+. ..|++..++++.|++.++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~-~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFM-GFKILAAILAIGGIVMIA 124 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchh-hhhHHHHHHHhCcEEEEE
Confidence 6788999999999999999999999999999999999999996 788888888888887665
No 58
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.35 E-value=0.0078 Score=43.35 Aligned_cols=106 Identities=12% Similarity=-0.036 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q 042874 17 QIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGYIG 95 (167)
Q Consensus 17 ~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~~g 95 (167)
.-.+||.+.++.|.+.+ +.++..-.. |..-.... . .++|.+. ..+.- -.....|++.
T Consensus 4 Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----L-------------l~n~~y~--ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 4 VGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----L-------------LLNPKYI--IPFLLNQSGSVLFFLL 61 (113)
T ss_pred ehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----H-------------HHhHHHH--HHHHHHHHHHHHHHHH
Confidence 44689999999999875 344443331 32111111 0 1112222 23333 4556688899
Q ss_pred hhccchHHHHHHh-hhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 042874 96 IAYSSPTLSAAIT-NTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLT 145 (167)
Q Consensus 96 l~~tsa~~asii~-~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~l 145 (167)
+..++-+.+.-+. ++.=++|++.++++.+|.. +++.++|+.+.+.|+.+
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~-~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVI-SRRTWLGMALILAGVAL 111 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCccc-chhHHHHHHHHHcCeee
Confidence 9999999999886 6788888899987777776 58889999999999865
No 59
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.0089 Score=48.60 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 72 FSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 72 ~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+..|..+.++|+.+++.|.+.|.-+.+-+|-..++++.+--.|+.+.+.++++.++ +.+||+|.++.+.+...=..
T Consensus 238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npl-s~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPL-SGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHhhhHhh
Confidence 45677888999988999999999999999999999999999999999999999999 59999999999999877444
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.03 E-value=0.15 Score=42.01 Aligned_cols=120 Identities=14% Similarity=0.002 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYI 94 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~ 94 (167)
+.....|..|.++.|.. ++||.+..+=+ .++-++-..+.... .++ +..+++.|+ =++-|++-...+.+++.
T Consensus 144 l~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~-~~~---~~~~k~~~~-nil~G~~w~ignl~~~i 214 (269)
T PF06800_consen 144 LISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLF-SKK---PFFEKKSWK-NILTGLIWGIGNLFYLI 214 (269)
T ss_pred HHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhc-ccc---cccccchHH-hhHHHHHHHHHHHHHHH
Confidence 33455667788888874 37777766644 33322222221111 111 112233333 35566655777888999
Q ss_pred HhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHH----HHHHHHHHHHH
Q 042874 95 GIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEI----IIIIIINNDTL 144 (167)
Q Consensus 95 gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~----~Gi~l~~~Gv~ 144 (167)
+.+..+.+.+=.+..+.+++..+-+.+++||+-+ ++++ +|+++.+.|++
T Consensus 215 s~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt-~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 215 SAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT-KKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hHHhccchhhhhHHhHHHHHHHhhhheEEEecCc-hhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999984 6654 45555555543
No 61
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.78 E-value=0.093 Score=41.25 Aligned_cols=60 Identities=12% Similarity=-0.071 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 042874 85 GVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLT 145 (167)
Q Consensus 85 g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~l 145 (167)
.+..+.+..+-++|.++..-+....+.++++.+++.++++|+++ ..+++|+.+.+.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls-~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKIS-STFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHeeeEe
Confidence 35566678888999999999999999999999999999999995 9999999999988653
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.0046 Score=51.88 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=63.9
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 042874 78 IFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNC 156 (167)
Q Consensus 78 l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~ 156 (167)
..+.|++- .+....-|-+..+.+++.-+-+-++.-+..++++..+++||++ ....+|+.++++|..+++. .++.++.
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~-~~g~lGc~l~v~Gst~iV~-haP~e~~ 143 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLN-LLGILGCVLCVVGSTTIVI-HAPKEQE 143 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHH-HhhhhheeEEecccEEEEE-ecCcccc
Confidence 34566666 6666666778888899999999999999999999999999996 8999999999999998876 4443443
Q ss_pred CCC
Q 042874 157 PPS 159 (167)
Q Consensus 157 ~~~ 159 (167)
-.|
T Consensus 144 i~t 146 (335)
T KOG2922|consen 144 IES 146 (335)
T ss_pred ccc
Confidence 333
No 63
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.18 Score=42.31 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=98.1
Q ss_pred hhhHHHHHHHH--HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHccCCC----CcCCCCCHHHHHHHHHHHH
Q 042874 11 KDDIIKQIKAI--RNLEQLFKAASS-KGLSYYVFVGYSYPLATLALLPLIFIFPSTT----TVVPPFKFSLLLRIFLLSS 83 (167)
Q Consensus 11 k~~~~~~~~~w--g~~~i~~K~al~-~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~----~~~~~~~~~~~~~l~~lgl 83 (167)
.|+....+-+| +.+.+..|...+ .+.+-+.+.+|-.+++.+.+..+.+..++.. ..........+..+.+-++
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 34543333344 556677787765 3477788899999999888777765542211 0001123445677788888
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874 84 IGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD 149 (167)
Q Consensus 84 ~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~ 149 (167)
+|.+-.++-++..+.+||.+-++.-...=..+.+...++.+++.+ +..++|+.+++.|-+..+..
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~-~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFT-FLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceec-hhhhHHHHHHhhhhhHHhhh
Confidence 887777788899999999998888866666667777788888885 99999999999999887653
No 64
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.56 Score=39.45 Aligned_cols=122 Identities=12% Similarity=-0.009 Sum_probs=88.1
Q ss_pred HHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 042874 24 LEQLFKAASSKGLSYYVFVG--YSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSP 101 (167)
Q Consensus 24 ~~i~~K~al~~~~~p~~l~~--~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa 101 (167)
..++=|.++...=-|..+.. +|.+...+++...-..+ --+. ++++++..+..+-..++-.+..+.=..+++|.+-
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~--~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnV 103 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-LVNF--RPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNV 103 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-eeec--CCcChHHHHHHccHHHHHHHHHHHccccccccCc
Confidence 34566888765333444444 88888877766553321 1111 4566777777777777666666666788999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874 102 TLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD 149 (167)
Q Consensus 102 ~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~ 149 (167)
..-+++=+.+|+++++....+++.|++ ..-+..+....+|....+..
T Consensus 104 pm~tv~kn~tii~~ai~E~lf~~~~~~-~~v~~Sv~~m~~~s~~~~~~ 150 (314)
T KOG1444|consen 104 PMFTVFKNLTIILTAIGEVLFFGKRPS-NKVWASVFAMIIGSVAAAFT 150 (314)
T ss_pred hHHHHHhhchHHHHHHhHHhhcCcCch-hhHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999884 77788888888887776553
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.25 E-value=1.4 Score=37.64 Aligned_cols=123 Identities=13% Similarity=-0.002 Sum_probs=67.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH---HHHHHHHH-HHHHccCC-CCcC----CCCCHHHHHHHHHHHHH-H---HHHHHHH
Q 042874 26 QLFKAASSKGLSYYVFVGYSYP---LATLALLP-LIFIFPST-TTVV----PPFKFSLLLRIFLLSSI-G---VLSQTVG 92 (167)
Q Consensus 26 i~~K~al~~~~~p~~l~~~R~~---~A~liL~~-~~~~~~~~-~~~~----~~~~~~~~~~l~~lgl~-g---~~~~~~~ 92 (167)
+.-+.+...+.+|.....-.+. +++.+.-. ++.+...| ++.. .+.+++.+..=.+++.+ | ...+.+|
T Consensus 198 ~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y 277 (345)
T PRK13499 198 PMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFY 277 (345)
T ss_pred chhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555567888877777766 55544432 22221011 1110 11122222333222222 2 5566788
Q ss_pred HHHhhccchHHHHH---Hh-hhHHHHHHHHHHHHhhcccC-----chhHHHHHHHHHHHHHHHHhc
Q 042874 93 YIGIAYSSPTLSAA---IT-NTIPAFTFTLAILFSCLKMM-----SWIEIIIIIIINNDTLTSKMD 149 (167)
Q Consensus 93 ~~gl~~tsa~~asi---i~-~l~Pv~~~ila~~~~~Er~~-----~~~~~~Gi~l~~~Gv~li~~~ 149 (167)
..|-+..+.+.+.+ +. .++-++..+-+. ++||+-+ .+.-++|+++.+.|+.++...
T Consensus 278 ~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 278 AMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 88888876555544 55 444455555555 6999863 133488999999999888653
No 66
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=95.07 E-value=0.001 Score=54.44 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHH
Q 042874 37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTF 116 (167)
Q Consensus 37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ 116 (167)
-|..-+|.-+..=+++-.|+..+| ++. -...|...+++|+.-.=.+++...+.|||+-+...++..-.-..+.
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR--~~~-----~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~ 119 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFR--RKY-----IKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVL 119 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhh--hHH-----HHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHH
Confidence 355567777777778888887774 222 1344677888888776666777889999999999999876655678
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 117 TLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 117 ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+++++++|.|-+ +.|+.|+++|+.|++.++.
T Consensus 120 ~lsw~fLktrYr-lmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 120 VLSWFFLKTRYR-LMKISGVVICIVGVVMVVF 150 (336)
T ss_pred HHHHHHHHHHHh-hheeeeEEeEecceEEEEE
Confidence 899999999994 9999999999999988765
No 67
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.97 E-value=0.34 Score=41.76 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCCcCCCCCHHHHHHHHHHHHHH-HHHHH
Q 042874 17 QIKAIRNLEQLFKAASSK---GLSYYVFVGYSYPLATLALLPLIFIFP--STTTVVPPFKFSLLLRIFLLSSIG-VLSQT 90 (167)
Q Consensus 17 ~~~~wg~~~i~~K~al~~---~~~p~~l~~~R~~~A~liL~~~~~~~~--~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~ 90 (167)
....||.+.++.|.-.++ .+|--.+-.+=-++..++++|..+... ...+. .-.+..+...++..+++| ++.-+
T Consensus 255 sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F-~lP~~~q~~~vv~~~ligtvvSDy 333 (416)
T KOG2765|consen 255 SALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERF-ELPSSTQFSLVVFNNLIGTVVSDY 333 (416)
T ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc-cCCCCceeEeeeHhhHHHHHHHHH
Confidence 445789999988887653 255555555555666777776655430 11111 112334456678899999 99999
Q ss_pred HHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 91 VGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 91 ~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
+|.+|.-.|++-.+++=++ ++|+ .++...++.+.++ +...++|.+..+.|-+.++..+
T Consensus 334 lW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~-S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 334 LWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHP-SALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCC-CHHHHHHHHHHHHHHhheeccc
Confidence 9999999999999998776 5575 3444455556667 5999999999999988877543
No 68
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.19 Score=42.19 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhh
Q 042874 34 KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV----VPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITN 109 (167)
Q Consensus 34 ~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~----~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~ 109 (167)
.++++..+.++-.++.++.=...... ....+ ..+..++-++.+++++.+|++.|.+.|+-++.-++-.-+.|+.
T Consensus 198 ~k~s~~~mM~~vNLf~~i~~~~~li~--qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 198 YKVSSLHMMFGVNLFSAILNGTYLIL--QGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred CCccHhHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence 45899998888888876654443222 11111 0123567788999999999889999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 110 TIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 110 l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+==++..+++.+..+.++ +..|++|+.+.+.|..+=+.
T Consensus 276 tRk~~si~lS~i~f~h~~-s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPL-SSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHHHHHHHHHHHHhCCcc-chhhccCeeeehHHHHHHHH
Confidence 999999999999999999 59999999999999987544
No 69
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=0.67 Score=35.00 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-hhhHHHHH
Q 042874 37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAI-TNTIPAFT 115 (167)
Q Consensus 37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~ 115 (167)
+|+.-.+..+..++.++..+.+.. ++... ....++.-++...=|++|+.+-..-....+..++++...+ ..-+=+..
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~-~~~~~-~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g 110 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIK-QGHPG-LAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG 110 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHh-cCCCc-hhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence 799999999999999888877764 33222 2211222233455567776555555666777776666544 34445555
Q ss_pred HHHHHHHhh----cccCchhHHHHHHHHHHHHHHHH
Q 042874 116 FTLAILFSC----LKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 116 ~ila~~~~~----Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
+++..+=.. .++ +..+++|+++.++|++++.
T Consensus 111 lliD~fG~~g~~~~~~-~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 111 LLIDHFGWFGVPKRPL-NLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHhhcccCCCcCCC-CHHHHHHHHHHHHHHHHhc
Confidence 555543322 455 4889999999999965553
No 70
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=94.50 E-value=0.028 Score=47.16 Aligned_cols=131 Identities=8% Similarity=0.063 Sum_probs=82.3
Q ss_pred HHHHHHH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCC--CCcCCCCCHHHH-HHHHHHHHHHH
Q 042874 15 IKQIKAI-----RNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPST--TTVVPPFKFSLL-LRIFLLSSIGV 86 (167)
Q Consensus 15 ~~~~~~w-----g~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~--~~~~~~~~~~~~-~~l~~lgl~g~ 86 (167)
++.+..| +..+...+.-.+-+ =|+-++.+..++=.++-...-...+++ |.+ .+.++++. +++...|+.++
T Consensus 18 L~lVl~yY~~Si~Ltf~~~~~~~~f~-fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r-~~~sw~~~Lr~~aPtalata 95 (349)
T KOG1443|consen 18 LALVLLYYFLSIGLTFYFKWLTKNFH-FPLFVTSLHLAVKFLFAALSRRLYQCSVPRAR-VVLSWRDYLRRLAPTALATA 95 (349)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCcC-CchHHHHHHHHHHHHHHHHHHHHHhccCCccc-cCCcHHHHHHHhhhhhhhhh
Confidence 4444555 33444444444332 366667666554332221111111011 111 23555553 45567777778
Q ss_pred HHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 87 ~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
..-.+-+++++|++-+.=++.=+..|+|+.+++.++.-||++ +.-..-+.+..+|+++.+.
T Consensus 96 ~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~-w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 96 LDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFR-WALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred cccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhhheeEEEe
Confidence 888899999999999999999999999999999999999994 6655555556666665543
No 71
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.06 E-value=1.1 Score=36.44 Aligned_cols=126 Identities=12% Similarity=0.087 Sum_probs=92.7
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 042874 24 LEQLFKAASS-KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV--VPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSS 100 (167)
Q Consensus 24 ~~i~~K~al~-~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~--~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~ts 100 (167)
+....|...+ ....-..-.+|..+++..+++.+.+..+++... ....+...+.++++.|++.++-.++--|.++-|+
T Consensus 170 fVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtS 249 (309)
T COG5070 170 FVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTS 249 (309)
T ss_pred HHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehh
Confidence 3444555432 235667889999999999999888876222211 0123455566777888877666677788899999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 101 PTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 101 a~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
.+.-+..-++.-.-..+-+.++++|+.+ ..++..+.+++..-.+.+..+
T Consensus 250 STtySMvGALNKlp~alaGlvffdap~n-f~si~sillGflsg~iYavak 298 (309)
T COG5070 250 STTYSMVGALNKLPIALAGLVFFDAPVN-FLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred hhHHHHHHHhhhChHHHhhhhhcCCchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888889999999996 889999999887666655433
No 72
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.15 E-value=2.1 Score=36.61 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH--HccCCCCc--CCCCCHHHHHHHHHHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIF--IFPSTTTV--VPPFKFSLLLRIFLLSSIGVLSQT 90 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~--~~~~~~~~--~~~~~~~~~~~l~~lgl~g~~~~~ 90 (167)
..+..+||++++-.|.. ++ .|-..+ +.-..+=.-++.|+.. .. .+.-. ....+.+.+..-++.|.+=...|.
T Consensus 13 ~i~~~~~GS~~~p~K~~-k~-w~wE~~-W~v~gi~~wl~~~~~~g~~~-~~~f~~~~~~~~~~~~~~~~l~G~~W~iG~i 88 (345)
T PRK13499 13 LIGGASSGSFYAPFKKV-KK-WSWETM-WSVGGIFSWLILPWLIAALL-LPDFWAYYSSFSGSTLLPVFLFGALWGIGGI 88 (345)
T ss_pred HHHHHHhhccccccccc-CC-CchhHH-HHHHHHHHHHHHHHHHHHHH-hhhHHHHHHhcCHHHHHHHHHHHHHHHhhhh
Confidence 44667999999999993 32 342211 1100000112222111 10 11000 012345555555556655578899
Q ss_pred HHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhccc---C---chhHHHHHHHHHHHHHHHHh
Q 042874 91 VGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKM---M---SWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 91 ~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~---~---~~~~~~Gi~l~~~Gv~li~~ 148 (167)
.++.++++.+-+.+--+ +.++=+...++..++++|=. + ...-.+|+++.++|+.+...
T Consensus 89 ~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 89 TYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888655 45777888888888877532 2 24468899999999998876
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=92.98 E-value=1.5 Score=36.20 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhH---HHHHHHHHHHHHHHH
Q 042874 72 FSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIE---IIIIIIINNDTLTSK 147 (167)
Q Consensus 72 ~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~---~~Gi~l~~~Gv~li~ 147 (167)
.+.+..-++.|++-...|..++.+.++.+.+++-=+.+ .+=+.+.++++++++|--+...+ .+++++.++|+.+-+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 36677666777766889999999999999998876654 66666888999999997642233 346677888887765
Q ss_pred h
Q 042874 148 M 148 (167)
Q Consensus 148 ~ 148 (167)
.
T Consensus 122 ~ 122 (269)
T PF06800_consen 122 Y 122 (269)
T ss_pred c
Confidence 4
No 74
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=88.41 E-value=10 Score=32.17 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCCCcC---C---CC-CHHHHHHHHHHHHHH-H--HHHHHHHHHhhccchHHHHH
Q 042874 37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVV---P---PF-KFSLLLRIFLLSSIG-V--LSQTVGYIGIAYSSPTLSAA 106 (167)
Q Consensus 37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~---~---~~-~~~~~~~l~~lgl~g-~--~~~~~~~~gl~~tsa~~asi 106 (167)
+|++..+.=.-.-.+.++|..+.. |..... + .. +..-++.+..+++.| . +--...|.=+..|+.-+-++
T Consensus 196 ~P~~ti~~l~p~M~~~Ll~~~l~f-EG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSI 274 (349)
T KOG1443|consen 196 NPIDTIFHLQPWMSIGLLPLSLLF-EGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSI 274 (349)
T ss_pred CCeeeHHHhhhHHHHHHHHHHHHH-cccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeH
Confidence 566666655555566666766655 432210 0 00 111233344445545 2 23335566667777666666
Q ss_pred HhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874 107 ITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 107 i~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
.--.-=+.+.+++..+.+|++ +-..+.|..++..|+..-
T Consensus 275 aGI~Kel~tl~la~ii~~d~l-s~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 275 AGIVKEVCTLLLAIIILKDQL-SLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHHHHHh
Confidence 666667778899999999999 599999999999999887
No 75
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.88 E-value=4.5 Score=33.86 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHccCC-CCcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhH
Q 042874 35 GLSYYVFVGYSYPLATLALLPLIFIFPST-TTVV--PPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTI 111 (167)
Q Consensus 35 ~~~p~~l~~~R~~~A~liL~~~~~~~~~~-~~~~--~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~ 111 (167)
+-+...+.+|...++.+.++.......+- +.+. ...+.+.....++.++.|.+.+.+-..=++--+|..|+.++..-
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 45667888899988888776665543110 0000 11235566677777777755555555667778999999999999
Q ss_pred HHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874 112 PAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 112 Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
-.+|.+++++++..+++ ....-|.++.+.|+++=.
T Consensus 297 KavTi~lSfllFsKPfT-~qy~~~gllv~lgI~Ln~ 331 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFT-EQYVWSGLLVVLGIYLNM 331 (367)
T ss_pred hHHHHHHHHHHHcCchH-HHHhhhhHHHHHHHHhhc
Confidence 99999999999999995 777778888899998743
No 76
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=84.22 E-value=3.4 Score=33.90 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC-CCCCCCC
Q 042874 79 FLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK-AASTNCP 157 (167)
Q Consensus 79 ~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~-g~~~~~~ 157 (167)
...++--.+....-+.++||.+=-+.-+=-++-|+=+++++.++.+.+- ++++..-++..+.||.+.. ++ +...+..
T Consensus 89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY-~w~kY~cVL~IV~GValFm-YK~~Kv~g~e 166 (337)
T KOG1580|consen 89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSY-HWRKYCCVLMIVVGVALFM-YKENKVGGAE 166 (337)
T ss_pred HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccc-cHHHHHHHHHHHHHHHHhh-ccccccCCCc
Confidence 3444332556667788899998777777778889999999999999999 4999999999999998875 45 4444444
No 77
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=81.84 E-value=2.5 Score=30.28 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=42.8
Q ss_pred HHHHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874 89 QTVGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 89 ~~~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
..+||.-++.++-+.|.-+.| +.=.|+.+.+..+ +|+....+.++|+.+.+.|+.+.
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence 346777788888888876655 6677788888764 55554577899999999998764
No 78
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=81.71 E-value=20 Score=30.32 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhh--hHHHH
Q 042874 37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITN--TIPAF 114 (167)
Q Consensus 37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~--l~Pv~ 114 (167)
+|..+.+.+-+.+.++=.....+ ++.. ...++.|......++...+...+.|.+++|.|=-+-.+==+ +.|++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~---~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKW---WKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc---cccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 56677777777776655333322 2222 23456688888888888888899999999998333333222 56665
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 115 TFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 115 ~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
+...++.+.|.+ ..+.+-..+.-.|+.+....+
T Consensus 125 --lmg~Lvy~~ky~-~~eYl~~~LIs~GvsiF~l~~ 157 (327)
T KOG1581|consen 125 --LMGTLVYGRKYS-SFEYLVAFLISLGVSIFSLFP 157 (327)
T ss_pred --HHHHHHhcCccC-cHHHHHHHHHHhheeeEEEec
Confidence 788899999995 777777777778887766643
No 79
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=80.33 E-value=1.9 Score=35.42 Aligned_cols=105 Identities=19% Similarity=0.082 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHH
Q 042874 34 KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPA 113 (167)
Q Consensus 34 ~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv 113 (167)
+|.|.+.--+.-+.++++++-- + +. . ++.++..|. -.+-|++-...+.+++.+-+..+-+++=.+..+.-+
T Consensus 177 ~g~saiLPqAiGMv~~ali~~~----~-~~--~-~~~~K~t~~-nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVi 247 (288)
T COG4975 177 DGLSAILPQAIGMVIGALILGF----F-KM--E-KRFNKYTWL-NIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVI 247 (288)
T ss_pred cchhhhhHHHHHHHHHHHHHhh----c-cc--c-cchHHHHHH-HHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheee
Confidence 4555555555555565555421 1 21 1 233444444 355666656777888888887776666666666666
Q ss_pred HHHHHHHHHhhcccCchhH----HHHHHHHHHHHHHHHh
Q 042874 114 FTFTLAILFSCLKMMSWIE----IIIIIIINNDTLTSKM 148 (167)
Q Consensus 114 ~~~ila~~~~~Er~~~~~~----~~Gi~l~~~Gv~li~~ 148 (167)
...+-+.++++||-+ +++ ++|+++.+.|+.++..
T Consensus 248 isTiGGIl~L~ekKt-kkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 248 ISTIGGILFLGEKKT-KKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred eeecceEEEEeccCc-hhhhhhhhhhHHHHHHHhhhhhe
Confidence 666777889999985 665 5677777778776654
No 80
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=77.50 E-value=30 Score=29.20 Aligned_cols=128 Identities=12% Similarity=0.073 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHH----HHHHHHccCCCCc-CCCCCHHHHHH---------HHHHHHH
Q 042874 20 AIRNLEQLFKAAS-SKGLSYYVFVGYSYPLATLAL----LPLIFIFPSTTTV-VPPFKFSLLLR---------IFLLSSI 84 (167)
Q Consensus 20 ~wg~~~i~~K~al-~~~~~p~~l~~~R~~~A~liL----~~~~~~~~~~~~~-~~~~~~~~~~~---------l~~lgl~ 84 (167)
+-+..++.-.+-+ ...++|...+.+.-.++..++ .|+.+....+... .++-+..||.. .+.+.+.
T Consensus 187 ivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~ 266 (372)
T KOG3912|consen 187 IVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALI 266 (372)
T ss_pred HHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHh
Confidence 4466666544433 356999999999998885544 3433322011111 12223455543 2344555
Q ss_pred H-HHHHHHHH-HH---hhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 85 G-VLSQTVGY-IG---IAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 85 g-~~~~~~~~-~g---l~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
| .....+|+ .| -++.||++-.++-.+=-.++=+++.....|.++ ..++.|.++-..|..+...
T Consensus 267 ~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~-llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 267 GFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFH-LLQILGFLILIMGIILYNQ 334 (372)
T ss_pred hhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5 44333333 23 356678888888886666666777778999995 9999999999999988643
No 81
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=74.64 E-value=19 Score=25.63 Aligned_cols=33 Identities=6% Similarity=-0.072 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 115 TFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 115 ~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
..+..++.-+.|++ +..+.|..+|++|+.++..
T Consensus 72 sL~W~~~Vdg~~pd-r~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 72 SLAWLWVVDGVRPD-RYDWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHHHHHcCcCCc-HHHhhhHHHHHhceeeeEe
Confidence 34456677788885 8999999999999877654
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=71.93 E-value=2.3 Score=35.00 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042874 17 QIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGI 96 (167)
Q Consensus 17 ~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl 96 (167)
=...||+...+.... |-+|.+=+..--+.| +++....++. . . |..+.+.+..-++-|.+-...|..++.+.
T Consensus 10 P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GA-Lifaiiv~~~-~---~-p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~ 80 (288)
T COG4975 10 PALGWGSIPLVANKF---GGKPYQQTLGTTLGA-LIFAIIVFLF-V---S-PELTLTIFIVGFISGAFWSFGQANQFKAI 80 (288)
T ss_pred HHHHhcccceeeeec---CCChhHhhhhccHHH-HHHHHHHhee-e---c-CccchhhHHHHHHhhhHhhhhhhhhhhhe
Confidence 345788877654432 346665544444333 3333333332 1 1 44566655544444544478899999999
Q ss_pred hccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhHHHH---HHHHHHHHHH
Q 042874 97 AYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIEIII---IIIINNDTLT 145 (167)
Q Consensus 97 ~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~~~G---i~l~~~Gv~l 145 (167)
++.+.++|.-+.+ .+=+-+.+++.+.++|=-+....++| +++.+.|+.+
T Consensus 81 ~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 81 QLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred eeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 9999999987755 66777788899999997642223343 3344455544
No 83
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=70.67 E-value=36 Score=24.26 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=44.5
Q ss_pred HHHHHHHH-HHHHHHHH-----HHhhccchHHHHHHhhhHHHHH-HHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874 78 IFLLSSIG-VLSQTVGY-----IGIAYSSPTLSAAITNTIPAFT-FTLAILFSCLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 78 l~~lgl~g-~~~~~~~~-----~gl~~tsa~~asii~~l~Pv~~-~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
..++--.| +..-+++. .|.+.-|+++--+++=.+-+.+ ..++.++++|+++ ++.+.|.++.+.+|.++
T Consensus 32 ~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~-~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 32 IAILISWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLK-WNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCcc-HHHHHHHHHHHHhhhee
Confidence 34444445 55555544 4555566777777766444433 5677889999995 99999988877776543
No 84
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=69.07 E-value=7.5 Score=27.67 Aligned_cols=36 Identities=8% Similarity=-0.125 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 112 PAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 112 Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
-+...+..+.+-++|++ +..++|..++++|+.++..
T Consensus 68 I~~Sl~W~w~vdg~~Pd-~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 68 IVASLLWGWLVDGVRPD-RWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHHHhhhcCcCCC-hHHHHhHHHHHHhHHheEe
Confidence 34445667788899996 8999999999999988754
No 85
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.91 E-value=7.6 Score=32.55 Aligned_cols=129 Identities=18% Similarity=0.125 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHccCC-CCc-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042874 22 RNLEQLFKAASSK-GLSYYVFVGYSYPLATLALLPLIFIFPST-TTV-VPPF-KFSLLLRIFLLSSIGVLSQTVGYIGIA 97 (167)
Q Consensus 22 g~~~i~~K~al~~-~~~p~~l~~~R~~~A~liL~~~~~~~~~~-~~~-~~~~-~~~~~~~l~~lgl~g~~~~~~~~~gl~ 97 (167)
+.+.+.+|..+.. +=.-..+++|-...|.++++|......+- +.+ .+.. ..+-|..+.+-|++|+...+.-.+=++
T Consensus 198 Alnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK 277 (347)
T KOG1442|consen 198 ALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIK 277 (347)
T ss_pred HHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEE
Confidence 4455666665432 11235788899999999999988764111 111 0222 455677777888888333333334455
Q ss_pred ccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCC
Q 042874 98 YSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKA 151 (167)
Q Consensus 98 ~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g 151 (167)
-|||-+=-+=-..=-.-=.++|..+.+|.. +...|-|.++.+.|....+.-++
T Consensus 278 ~TSplThnISgTAka~aQTvlAv~~y~E~k-s~lwwtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 278 VTSPLTHNISGTAKAAAQTVLAVAYYSETK-SGLWWTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred ecccceeeecHhHHHHHHHHHHHHHHHHHh-hhheeeeeEEEEehhHHHHHHHH
Confidence 565422111111111112267788899998 47888999999999888776443
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=66.74 E-value=33 Score=28.06 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHH-HHHHHHHHHHH
Q 042874 15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLS-SIGVLSQTVGY 93 (167)
Q Consensus 15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-l~g~~~~~~~~ 93 (167)
+.+...+|++++-.|.. +. -|++.+-++-.....+.=+...... + . ++. ..+..+| .+=+..+.+-.
T Consensus 6 ~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~-~---~-p~f-----~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 6 IVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLIL-G---F-PPF-----YPWAMLGGALWATGNILVV 73 (254)
T ss_pred HHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhc-C---C-Ccc-----eeHHHhhhhhhhcCceeeh
Confidence 34566889999999985 44 4776555544433322222222221 1 1 222 1223333 22244555556
Q ss_pred HHhhccchHHHHHHhhhHHHHH-HHHHHH-HhhcccC----chhHHHHHHHHHHHHHHHHhcCCC
Q 042874 94 IGIAYSSPTLSAAITNTIPAFT-FTLAIL-FSCLKMM----SWIEIIIIIIINNDTLTSKMDKAA 152 (167)
Q Consensus 94 ~gl~~tsa~~asii~~l~Pv~~-~ila~~-~~~Er~~----~~~~~~Gi~l~~~Gv~li~~~~g~ 152 (167)
-.++..+=+.+-.+-++.-+++ -..+++ +++++.. .....+|++++++|..+...-+.+
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 6677777777766666544433 233332 2333222 366799999999999887765543
No 87
>PRK02237 hypothetical protein; Provisional
Probab=60.25 E-value=60 Score=23.18 Aligned_cols=35 Identities=9% Similarity=-0.157 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 113 AFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 113 v~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+...+..+..-++|++ +..++|..++++|+.++..
T Consensus 71 ~~Sl~W~w~vdg~~Pd-~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 71 AGSLLWLWVVDGVRPD-RWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHhcCcCCC-hhHHHhHHHHHHhHHHhee
Confidence 3444567788899996 8999999999999988754
No 88
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=56.54 E-value=17 Score=30.50 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-----Hcc-CCCCc--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHH
Q 042874 35 GLSYYVFVGYSYPLATLALLPLIF-----IFP-STTTV--VPPFKFSLLLRIFLLSSIG-VLSQTVGYIGIAYSSPTLSA 105 (167)
Q Consensus 35 ~~~p~~l~~~R~~~A~liL~~~~~-----~~~-~~~~~--~~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~~tsa~~as 105 (167)
|=+|-+..+|..++....++...- +.. .+..+ .|..... ....+.=++. ++.|++...|+...++-.++
T Consensus 191 GKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~--vP~~~~yLl~n~L~Qy~CikgVy~L~te~~s 268 (330)
T KOG1583|consen 191 GKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK--VPSMWVYLLFNVLTQYFCIKGVYILTTETSS 268 (330)
T ss_pred cCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc--ccHHHHHHHHHHHHHHHHHHhhhhhhceecc
Confidence 567788888888887554432110 000 00000 0111101 1222233445 88888888888777665554
Q ss_pred ----HHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874 106 ----AITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD 149 (167)
Q Consensus 106 ----ii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~ 149 (167)
+..++=-.+..+++.+.++.+++ +..|+|..+.+.|.++.+..
T Consensus 269 LTVTlvltlRKFvSLl~SiiyF~Npft-~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 269 LTVTLVLTLRKFVSLLFSIIYFENPFT-PWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred eEEEEeeeHHHHHHHhheeeEecCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 44455567778888888888894 99999999999999887763
No 89
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=55.86 E-value=35 Score=25.68 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=32.7
Q ss_pred HhhccchHHHHHHhhhHHHHHHHHHHHHhhcccC--chhHHHHHHHHHHHHHHHHh
Q 042874 95 GIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMM--SWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 95 gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~--~~~~~~Gi~l~~~Gv~li~~ 148 (167)
|+.--+.-.++.+.|+.|+++++++.+. -+++. ....++|.+++.+..++++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~lg~~l~fl~~r 122 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAFLGLALGFLLAR 122 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555567788999999999998887654 22221 12235565555555555443
No 90
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=55.53 E-value=27 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=21.7
Q ss_pred hhccchHHHHHHhhhHHHHHHHHHHHHh
Q 042874 96 IAYSSPTLSAAITNTIPAFTFTLAILFS 123 (167)
Q Consensus 96 l~~tsa~~asii~~l~Pv~~~ila~~~~ 123 (167)
++..+...++.+.+..|++.++++.++.
T Consensus 62 i~~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 62 IPESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566789999999999999887653
No 91
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=54.28 E-value=31 Score=25.93 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=22.2
Q ss_pred HhhccchHHHHHHhhhHHHHHHHHHHHHh
Q 042874 95 GIAYSSPTLSAAITNTIPAFTFTLAILFS 123 (167)
Q Consensus 95 gl~~tsa~~asii~~l~Pv~~~ila~~~~ 123 (167)
++...+.-.++.+.|+.|++.++.+..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667789999999999988775543
No 92
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=50.25 E-value=26 Score=22.86 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC---CCCCCccc
Q 042874 132 EIIIIIIINNDTLTSKMDKAAST---NCPPSEEF 162 (167)
Q Consensus 132 ~~~Gi~l~~~Gv~li~~~~g~~~---~~~~~~~~ 162 (167)
-++++++++.|.++...+..... +++++|||
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q~~~~~~e~y 39 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQNTNPSTENY 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCchhhc
Confidence 36889999999999988764432 33433665
No 93
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=47.83 E-value=1.3e+02 Score=23.35 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHhhcccC------------chhHHHHHHHHHHHHHHHH
Q 042874 109 NTIPAFTFTLAILFSCLKMM------------SWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 109 ~l~Pv~~~ila~~~~~Er~~------------~~~~~~Gi~l~~~Gv~li~ 147 (167)
...|+.+.++++...+||.. ..+++.+.++.+.|+.++.
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 56788888888888888875 4567889999999998875
No 94
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=47.25 E-value=36 Score=28.38 Aligned_cols=71 Identities=10% Similarity=-0.077 Sum_probs=44.6
Q ss_pred HHHHHHHH-HHHHH-HHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccC-ch----hHHHHHHHHHHHHHHHHh
Q 042874 78 IFLLSSIG-VLSQT-VGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMM-SW----IEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 78 l~~lgl~g-~~~~~-~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~-~~----~~~~Gi~l~~~Gv~li~~ 148 (167)
++++.+.. +..|. +.+.|+++-+++...-+.+ ..-..+.+-+.++++|--+ +. .-..|..+.+.|+.+++.
T Consensus 214 ~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~ 292 (300)
T PF05653_consen 214 LLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS 292 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence 34444444 55555 7788999988876654443 4445555666778887543 23 235677778888888764
No 95
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.19 E-value=1.4e+02 Score=26.07 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042874 17 QIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALL---PLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGY 93 (167)
Q Consensus 17 ~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~---~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~ 93 (167)
.+++|..+.-+.|.+.++ +.-+...-..+.++-++.. -++... +++. +.-.+..-.....+=++| -.+.|
T Consensus 197 liGgWs~slY~i~ql~~n-Lq~Iwieyr~yvLgYvlivgliSfaVCY-K~GP--p~d~RS~~ilmWtLqli~---lvl~Y 269 (452)
T KOG3817|consen 197 LIGGWSISLYVIKQLADN-LQLIWIEYRDYVLGYVLIVGLISFAVCY-KIGP--PKDPRSQTILMWTLQLIG---LVLAY 269 (452)
T ss_pred EEccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCC--CCCcchhhHHHHHHHHHH---HHHHH
Confidence 467898888888888765 6666665555666633222 222222 2211 222222222233333444 23456
Q ss_pred HHhhccchHHHHHHhhhH
Q 042874 94 IGIAYSSPTLSAAITNTI 111 (167)
Q Consensus 94 ~gl~~tsa~~asii~~l~ 111 (167)
.|++.++++.|.+|+.+.
T Consensus 270 fsvq~p~~a~A~iI~~lc 287 (452)
T KOG3817|consen 270 FSVQHPSAAIAAIIMVLC 287 (452)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 889999999998887654
No 96
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=44.30 E-value=1.7e+02 Score=23.54 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc-C-C---CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042874 20 AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV-V-P---PFKFSLLLRIFLLSSIGVLSQTVGYI 94 (167)
Q Consensus 20 ~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~-~-~---~~~~~~~~~l~~lgl~g~~~~~~~~~ 94 (167)
+=|...+...+.+.+.-.|+..--.+..+-++++..+....+++... . . ..+...|..++..++.| ...-.
T Consensus 125 ~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gG----llva~ 200 (244)
T PF04142_consen 125 LSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGG----LLVAF 200 (244)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhh----HHHHH
Confidence 33667788878787554566555555555444443333322121110 0 0 11233344344444444 33334
Q ss_pred HhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHH
Q 042874 95 GIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIII 137 (167)
Q Consensus 95 gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~ 137 (167)
-++|.+.-.=+.-++..=+++.+++..+++.+++ ....+|..
T Consensus 201 v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s-~~f~lg~~ 242 (244)
T PF04142_consen 201 VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPS-LSFLLGAA 242 (244)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHhhhee
Confidence 5888888888888888889999999999999995 77777754
No 97
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=36.32 E-value=88 Score=26.17 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=75.1
Q ss_pred chhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHH-HHHH-
Q 042874 10 EKDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLL-SSIG- 85 (167)
Q Consensus 10 ~k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl~g- 85 (167)
.|||+ ++..-+++.+++.-.....+ .|-.++...--++++++-..=... +|.+. ..+.+. +....++ ..++
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ~i~--~~~~~-~tl~w~-~~i~~yl~f~L~M 239 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQFIF--ERHHV-STLHWD-SAIFLYLRFALTM 239 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhh--hccce-eeEeeh-HHHHHHHHHHHHH
Confidence 36774 45555889988888887764 788887777777776655443222 44443 333332 2222222 2223
Q ss_pred HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874 86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
+..+.+.-.-++.++|+.-.+=.-+.-.+..++ +. ++-+.+ |.-.+.......|.++...
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i-~~-FgYhv~-wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI-RT-FGYHVD-WLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH-HH-Hhcchh-hhhHHHHHHHHHhhEEeec
Confidence 333334444455666554333333445555555 33 444574 8888998889999887754
No 98
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=33.53 E-value=77 Score=18.38 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 042874 68 PPFKFSLLLRIFLLSSIG-VLSQTVGYIGIA 97 (167)
Q Consensus 68 ~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~ 97 (167)
|.+++|++.-++..|..+ .....+|=+.--
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~lyP~~~f 34 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLYPYVKF 34 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhhhheeE
Confidence 556788888888888877 555554444433
No 99
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=31.45 E-value=55 Score=25.36 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=34.3
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 042874 104 SAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLT 145 (167)
Q Consensus 104 asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~l 145 (167)
....-+..|+++++......+||.+ +.|++.+++...|++.
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~ 47 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLV 47 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHH
Confidence 3455677888999999989999995 8999999999999874
No 100
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=31.03 E-value=2.4e+02 Score=24.29 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042874 22 RNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV---VPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAY 98 (167)
Q Consensus 22 g~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~---~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~ 98 (167)
|++++-.|..- +.+-...=....+++ -++.|+....-.-.+. ....+...+....+.|++=.+....|=.+++|
T Consensus 20 ~sfy~P~kkvk--~WsWEs~Wlv~gi~s-wli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mry 96 (344)
T PF06379_consen 20 GSFYVPFKKVK--GWSWESYWLVQGIFS-WLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRY 96 (344)
T ss_pred hhhccchhhcC--CccHHHHHHHHHHHH-HHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHH
Confidence 55667777753 344444333444444 3444544322011110 01123445555566666544455566677777
Q ss_pred cchHHHH-HHhhhHHHHHHHHHHHHhh-------cccCchhHHHHHHHHHHHHHHHHh
Q 042874 99 SSPTLSA-AITNTIPAFTFTLAILFSC-------LKMMSWIEIIIIIIINNDTLTSKM 148 (167)
Q Consensus 99 tsa~~as-ii~~l~Pv~~~ila~~~~~-------Er~~~~~~~~Gi~l~~~Gv~li~~ 148 (167)
.+-+... +...+.-++-.++-.++.+ ++- .+.-++|++++++|+.+...
T Consensus 97 LGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~-g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 97 LGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPS-GQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCC-chhhhhHHHHHHHHHHHHhH
Confidence 7766543 3344444444444333322 222 35679999999999998765
No 101
>PHA03049 IMV membrane protein; Provisional
Probab=27.74 E-value=99 Score=20.10 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 042874 132 EIIIIIIINNDTLTSKMDKAA 152 (167)
Q Consensus 132 ~~~Gi~l~~~Gv~li~~~~g~ 152 (167)
-++++++++.|.++...+.-.
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 367888999999998887543
No 102
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.74 E-value=2.4e+02 Score=24.14 Aligned_cols=66 Identities=9% Similarity=-0.075 Sum_probs=44.0
Q ss_pred HHHHH-HHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccC-----chhHHHHHHHHHHHHHHHHhcCC
Q 042874 86 VLSQT-VGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMM-----SWIEIIIIIIINNDTLTSKMDKA 151 (167)
Q Consensus 86 ~~~~~-~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~-----~~~~~~Gi~l~~~Gv~li~~~~g 151 (167)
+..|. ..+.+++.-+++..+-+.+ .--.++.+-+.+++||=-. -...+.|....+.|++++...+.
T Consensus 237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd 309 (335)
T KOG2922|consen 237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKD 309 (335)
T ss_pred HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecc
Confidence 44444 7889999999888876665 3345555666778887532 12346677777888888765443
No 103
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.18 E-value=3e+02 Score=22.67 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=68.7
Q ss_pred HHHHHHHhC-CC-CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH
Q 042874 26 QLFKAASSK-GL-SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTL 103 (167)
Q Consensus 26 i~~K~al~~-~~-~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~ 103 (167)
+.-|+.++. |. --+.+.+.+.....+-+..+-+.+ - ...+.++.+..+..+++-+...+.--.++||.+...
T Consensus 23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~-~-----~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpi 96 (309)
T COG5070 23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLR-L-----VEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPI 96 (309)
T ss_pred HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHh-H-----hheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeH
Confidence 344555542 22 135667777777666555443221 1 111122222223333333333333446788999899
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874 104 SAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK 147 (167)
Q Consensus 104 asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~ 147 (167)
=+++-|++-+.++.....+++.|++ .......++.+...+.-+
T Consensus 97 YTiFKNltII~iAygEvl~Fgg~vt-sl~l~SFilMvlSS~va~ 139 (309)
T COG5070 97 YTIFKNLTIILIAYGEVLFFGGRVT-SLELLSFILMVLSSVVAT 139 (309)
T ss_pred HHHhccceeehhHhhHHHHhcCccc-hhhHHHHHHHHHHHHHhc
Confidence 9999999999999999999999995 677777776666555443
No 104
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=25.29 E-value=36 Score=21.97 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhhccchH
Q 042874 72 FSLLLRIFLLSSIG--VLSQTVGYIGIAYSSPT 102 (167)
Q Consensus 72 ~~~~~~l~~lgl~g--~~~~~~~~~gl~~tsa~ 102 (167)
.+.|.++-+-+++| .+++.++..++.|.+|-
T Consensus 25 ~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~ 57 (65)
T PF08370_consen 25 ESYWYWIGVGALLGFIVLFNILFTLALTYLNPL 57 (65)
T ss_pred CCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34577788888888 67888999999998763
No 105
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=22.86 E-value=2e+02 Score=23.89 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=21.6
Q ss_pred HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHH
Q 042874 105 AAITNTIPAFTFTLAILFSCLKMMSWIEIIIII 137 (167)
Q Consensus 105 sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~ 137 (167)
+++-++.|+...++-+.+++.+.+ ..+++.++
T Consensus 237 ~I~P~lLPl~~~~~~y~llkKk~~-~~~li~~~ 268 (282)
T PRK11103 237 QLMPGLVPLLLTFACMWLLRKKVN-ALWIIVGF 268 (282)
T ss_pred HHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHH
Confidence 456678887777777767788874 55554443
No 106
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=3.6e+02 Score=20.35 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 042874 40 VFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTV 91 (167)
Q Consensus 40 ~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~ 91 (167)
.....+++.+.+.-..++... +.++|++.+..+.|.+| ..++++
T Consensus 4 ~~~~~~~~~a~i~~v~Faivf--------nvp~~~l~~~~~~g~~g~~v~~l~ 48 (156)
T COG3610 4 LMLLLDMLFAFIATVGFAIVF--------NVPPRALPICGFLGALGWVVYYLL 48 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777766666665553 23466777766666666 555543
No 107
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=21.16 E-value=2.3e+02 Score=23.41 Aligned_cols=32 Identities=13% Similarity=-0.080 Sum_probs=21.9
Q ss_pred HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHH
Q 042874 105 AAITNTIPAFTFTLAILFSCLKMMSWIEIIIII 137 (167)
Q Consensus 105 sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~ 137 (167)
+++-++.|+...++-+.+++.+.+ ..+++.++
T Consensus 227 ~I~P~llPl~~~~~~y~llkKk~~-~~~li~~~ 258 (271)
T TIGR00828 227 QLMPGLLPLGLTLLMYWLLRKKVN-PVLLIGGT 258 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 456678898877777777788874 55554433
No 108
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.67 E-value=2.4e+02 Score=18.01 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=17.2
Q ss_pred HHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHH
Q 042874 106 AITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDT 143 (167)
Q Consensus 106 ii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv 143 (167)
++..+.-+...+=+.++-.|+. -+..++.++.++++-
T Consensus 15 vFiaLagl~~~I~GlLfD~~~~-~~yg~~al~~Gv~~f 51 (62)
T PF11177_consen 15 VFIALAGLAAVIHGLLFDEERV-FRYGVIALVVGVAGF 51 (62)
T ss_pred HHHHHHHHHHHhhhhhccccch-hHHHHHHHHHHHHHH
Confidence 3344444444454555555555 244444444444443
No 109
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=3.2e+02 Score=19.34 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=43.5
Q ss_pred HHHHHHHH-HHHHHHHH-----HHhhccchHHHHHHhhhHHHHH-HHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874 78 IFLLSSIG-VLSQTVGY-----IGIAYSSPTLSAAITNTIPAFT-FTLAILFSCLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 78 l~~lgl~g-~~~~~~~~-----~gl~~tsa~~asii~~l~Pv~~-~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
+.++.-.| +..-++.. .|-+-.|+++--.++-.+.+.+ ..++.+.++|+++ +..+.|.++...|+.++
T Consensus 39 ~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~-~~~l~a~~~i~gav~fi 113 (116)
T COG3169 39 IVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLR-WNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHh
Confidence 34444455 55444433 3444455666656665444433 4568889999995 99999988888888765
No 110
>PRK11056 hypothetical protein; Provisional
Probab=20.50 E-value=3.4e+02 Score=19.67 Aligned_cols=69 Identities=7% Similarity=-0.096 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcc-cC----chhHHHHHHHHHHHH
Q 042874 70 FKFSLLLRIFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLK-MM----SWIEIIIIIIINNDT 143 (167)
Q Consensus 70 ~~~~~~~~l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er-~~----~~~~~~Gi~l~~~Gv 143 (167)
.+++.+..-++.|+.+ +....++..-+ =.+.-|+++.+++.-.+.+| ++ ...-.++..+-+.|+
T Consensus 7 ~ek~tLlLaliaGl~~ng~fs~Lf~s~V----------pFSiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~ 76 (120)
T PRK11056 7 QEKGTLLLALIAGLSINGTFAALFSSIV----------PFSIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGV 76 (120)
T ss_pred cchhhHHHHHHHHHhhchhhHHHHcccc----------ccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 3456666667778877 65555443222 24577999999997665544 32 122356777777887
Q ss_pred HHHHh
Q 042874 144 LTSKM 148 (167)
Q Consensus 144 ~li~~ 148 (167)
+..+.
T Consensus 77 f~ySA 81 (120)
T PRK11056 77 FLYSA 81 (120)
T ss_pred HHHHH
Confidence 76544
No 111
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=43 Score=28.21 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=56.7
Q ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHcc---CCCCcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042874 26 QLFKAASSKG----LSYYVFVGYSYPLATLALLPLIFIFP---STTTVVP--PFKFSLLLRIFLLSSIGVLSQTVGYIGI 96 (167)
Q Consensus 26 i~~K~al~~~----~~p~~l~~~R~~~A~liL~~~~~~~~---~~~~~~~--~~~~~~~~~l~~lgl~g~~~~~~~~~gl 96 (167)
..-|+.++.. =-|.-.++++.+....+-..+..... .+... + +++.+..+.+.-+.+.-.....+-++.+
T Consensus 45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftf-p~~~ldl~t~r~vlplsvVfi~mI~fnnlcL 123 (347)
T KOG1442|consen 45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTF-PSLQLDLATARQVLPLSVVFILMISFNNLCL 123 (347)
T ss_pred hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceecc-CcccccHHHHHhhcchhheeeeehhccceeh
Confidence 3455555420 25788889998888666655544320 11111 2 2333333444333333211112222334
Q ss_pred hccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHH
Q 042874 97 AYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINND 142 (167)
Q Consensus 97 ~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~G 142 (167)
+|.+.+-=-+=-+++-+|+.++.++++|+|-+ .....+..+.+.|
T Consensus 124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs-~~~~~~C~lIi~G 168 (347)
T KOG1442|consen 124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTS-FFALGCCLLIILG 168 (347)
T ss_pred hhcceEEEEeccchhhhHHHHhHHhhcccccc-cccceeehhheeh
Confidence 44432211111346678899999999999974 4444444444444
Done!