Query 042874
Match_columns 167
No_of_seqs 215 out of 1069
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1E-09 3.5E-14 80.6 7.4 71 79-150 33-105 (137)
2 3b5d_A Multidrug transporter E 98.8 2.7E-08 9.3E-13 70.1 10.2 69 80-149 34-104 (110)
3 1q90_R Cytochrome B6-F complex 29.0 66 0.0023 18.7 3.3 35 68-102 7-42 (49)
4 1v54_M VIIIB, IX, cytochrome C 6.8 4E+02 0.014 15.1 2.6 23 124-146 7-29 (46)
5 3qyc_A VH domain of IGG molecu 6.5 1.3E+02 0.0043 20.8 0.4 16 152-167 128-143 (146)
6 1afo_A Glycophorin A; integral 6.1 4.2E+02 0.014 14.5 2.4 16 133-148 16-31 (40)
7 4hyg_A Putative uncharacterize 5.4 1.1E+03 0.039 18.6 12.8 59 86-146 84-142 (301)
8 2lsw_A Disabled homolog 2; pla 4.8 1.8E+02 0.0061 16.0 0.2 9 7-15 29-37 (40)
9 3arc_T Photosystem II reaction 4.4 5.2E+02 0.018 13.5 1.9 11 118-128 18-28 (32)
10 2zxe_G FXYD10, phospholemman-l 4.1 5.9E+02 0.02 15.9 2.3 16 133-148 25-40 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.99 E-value=1e-09 Score=80.56 Aligned_cols=71 Identities=17% Similarity=0.038 Sum_probs=54.4
Q ss_pred HHHHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874 79 FLLSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK 150 (167)
Q Consensus 79 ~~lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~ 150 (167)
.++++++ ++++++++.++++.+++.+..+ .++.|+++.++++++++|+++ ..+++|+++.++|++++...+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls-~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD-LPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhcCC
Confidence 3678888 8999999999999999999888 899999999999999999995 999999999999999998744
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.85 E-value=2.7e-08 Score=70.12 Aligned_cols=69 Identities=17% Similarity=0.052 Sum_probs=63.8
Q ss_pred HHHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874 80 LLSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD 149 (167)
Q Consensus 80 ~lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~ 149 (167)
+.++++ ..++.++..++++.+.+.+..+ .++.|+++.+++.++++|+++ ..|++|+.+.++|++.+...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s-~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD-LPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhcC
Confidence 577778 8999999999999999999888 799999999999999999995 99999999999999998764
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=29.05 E-value=66 Score=18.68 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchH
Q 042874 68 PPFKFSLLLRIFLLSSIG-VLSQTVGYIGIAYSSPT 102 (167)
Q Consensus 68 ~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~~tsa~ 102 (167)
+.++||+++..+.+|..+ .....++-+.-...+|.
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~ 42 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPS 42 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCc
Confidence 567888888888888877 54444444444444433
No 4
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=6.79 E-value=4e+02 Score=15.07 Aligned_cols=23 Identities=9% Similarity=-0.189 Sum_probs=14.5
Q ss_pred hcccCchhHHHHHHHHHHHHHHH
Q 042874 124 CLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 124 ~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
+++++..-+.+|+.+++++.+.-
T Consensus 7 ~~~~s~~E~aigl~v~f~~~L~P 29 (46)
T 1v54_M 7 KTPTSPKEQAIGLSVTFLSFLLP 29 (46)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 34554345678888887776553
No 5
>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*
Probab=6.53 E-value=1.3e+02 Score=20.78 Aligned_cols=16 Identities=50% Similarity=0.378 Sum_probs=0.4
Q ss_pred CCCCCCCCccccccCC
Q 042874 152 ASTNCPPSEEFLNHIH 167 (167)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (167)
...+.+-+||-+||-|
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (146)
T 3qyc_A 128 GSEQKLISEEDLNHHH 143 (146)
T ss_dssp C---------------
T ss_pred CCCCCccChhHccccc
Confidence 3456677888888865
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=6.15 E-value=4.2e+02 Score=14.52 Aligned_cols=16 Identities=13% Similarity=-0.116 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 042874 133 IIIIIIINNDTLTSKM 148 (167)
Q Consensus 133 ~~Gi~l~~~Gv~li~~ 148 (167)
+.|+..++.|..+...
T Consensus 16 I~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 16 IFGVMAGVIGTILLIS 31 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666667666543
No 7
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=5.37 E-value=1.1e+03 Score=18.65 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874 86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS 146 (167)
Q Consensus 86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li 146 (167)
+.++.++-..-...++.......+..|-...........|-. .....|++++...+.+.
T Consensus 84 ~~~YVf~~l~~~~~~~~~~~~~~a~~~a~~~~~ll~~ypeWy--vid~~Gi~~~aG~aalF 142 (301)
T 4hyg_A 84 TFLYIFGALSLLALGPTTAAAAGTLIGAVAVTALLYLYPEWY--VIDILGVLISAGVASIF 142 (301)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCCCSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcccHH--HhhHHHHHHHhhHHHHH
Confidence 444444443333444434344445555444444444445543 46788888877655544
No 8
>2lsw_A Disabled homolog 2; platelet aggregation inhibitor, sulfatides, dodecylphosphoch blood clotting; NMR {Homo sapiens}
Probab=4.78 E-value=1.8e+02 Score=15.97 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=6.3
Q ss_pred cccchhhHH
Q 042874 7 GVDEKDDII 15 (167)
Q Consensus 7 ~~~~k~~~~ 15 (167)
||.+|..++
T Consensus 29 GvrYKAKLI 37 (40)
T 2lsw_A 29 GVKYKAKLI 37 (40)
T ss_dssp HHHHHHHHH
T ss_pred Ceeeeeeee
Confidence 677777765
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.42 E-value=5.2e+02 Score=13.48 Aligned_cols=11 Identities=9% Similarity=-0.113 Sum_probs=7.2
Q ss_pred HHHHHhhcccC
Q 042874 118 LAILFSCLKMM 128 (167)
Q Consensus 118 la~~~~~Er~~ 128 (167)
+-.++++|+++
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 44567888874
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=4.14 E-value=5.9e+02 Score=15.89 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 042874 133 IIIIIIINNDTLTSKM 148 (167)
Q Consensus 133 ~~Gi~l~~~Gv~li~~ 148 (167)
+++.++.+.|++++..
T Consensus 25 ifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLA 40 (74)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 4555667778877654
Done!