Query 042874
Match_columns 167
No_of_seqs 215 out of 1069
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 18:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042874.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042874hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlka1 g.37.1.1 (A:8-37) Zinc 19.8 6.7 0.00049 18.9 -0.7 8 158-165 13-20 (30)
2 d1q90r_ f.23.12.1 (R:) ISP sub 13.1 94 0.0068 15.8 3.3 18 68-85 5-22 (39)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 12.2 2.3E+02 0.017 19.8 6.3 45 99-144 56-104 (447)
4 d1xioa_ f.13.1.1 (A:) Sensory 4.8 4.8E+02 0.035 17.4 9.5 17 109-125 78-94 (226)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 4.1 2.4E+02 0.017 12.9 2.1 8 120-127 20-27 (30)
6 d1pv7a_ f.38.1.2 (A:) Lactose 3.9 5.5E+02 0.04 16.8 8.0 35 97-132 38-74 (417)
7 d2axtk1 f.23.36.1 (K:10-46) Ph 3.4 3.3E+02 0.024 13.3 2.5 15 107-121 15-29 (37)
8 d3d85d1 b.1.1.4 (D:1-87) The p 2.8 63 0.0046 19.6 -1.8 12 154-165 66-77 (87)
9 d1v54m_ f.23.7.1 (M:) Mitochon 2.7 4.3E+02 0.031 13.4 2.6 21 125-145 8-28 (43)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 2.5 4.2E+02 0.03 12.6 2.2 16 136-151 14-29 (34)
No 1
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.85 E-value=6.7 Score=18.89 Aligned_cols=8 Identities=38% Similarity=0.929 Sum_probs=6.1
Q ss_pred CCcccccc
Q 042874 158 PSEEFLNH 165 (167)
Q Consensus 158 ~~~~~~~~ 165 (167)
++|.|+||
T Consensus 13 snrqylnh 20 (30)
T d2dlka1 13 SNRQYLNH 20 (30)
T ss_dssp SSHHHHHH
T ss_pred ccHHHHHh
Confidence 46888886
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.13 E-value=94 Score=15.84 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 042874 68 PPFKFSLLLRIFLLSSIG 85 (167)
Q Consensus 68 ~~~~~~~~~~l~~lgl~g 85 (167)
+.+.+|++.-++.+|-.+
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 566788888888888765
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.16 E-value=2.3e+02 Score=19.83 Aligned_cols=45 Identities=9% Similarity=-0.182 Sum_probs=25.5
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hhcccCchhHHH--HHHHHHHHHH
Q 042874 99 SSPTLSAAITNTIPAFTFTLAILF--SCLKMMSWIEII--IIIIINNDTL 144 (167)
Q Consensus 99 tsa~~asii~~l~Pv~~~ila~~~--~~Er~~~~~~~~--Gi~l~~~Gv~ 144 (167)
.|.+..+.+.+...+...+.+.+. +-||.. +++.+ |.++..++..
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~~ 104 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVML 104 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHh
Confidence 456667777777666655555433 568884 66644 4444333333
No 4
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.79 E-value=4.8e+02 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHhhc
Q 042874 109 NTIPAFTFTLAILFSCL 125 (167)
Q Consensus 109 ~l~Pv~~~ila~~~~~E 125 (167)
-+.|++...+......+
T Consensus 78 lTtPlll~~l~l~~~~~ 94 (226)
T d1xioa_ 78 VTTPLLLLSLSWTAMQF 94 (226)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HcccHHHHHHHHHHHHh
Confidence 35687777776655443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.15 E-value=2.4e+02 Score=12.94 Aligned_cols=8 Identities=13% Similarity=-0.073 Sum_probs=5.1
Q ss_pred HHHhhccc
Q 042874 120 ILFSCLKM 127 (167)
Q Consensus 120 ~~~~~Er~ 127 (167)
.++++|++
T Consensus 20 aiffrepp 27 (30)
T d2axtt1 20 AIFFREPP 27 (30)
T ss_dssp HHHTSCCC
T ss_pred HHHhcCCC
Confidence 35667766
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.89 E-value=5.5e+02 Score=16.84 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=24.5
Q ss_pred hccchHHHHHHhhhHHHHHHHHHHHH--hhcccCchhH
Q 042874 97 AYSSPTLSAAITNTIPAFTFTLAILF--SCLKMMSWIE 132 (167)
Q Consensus 97 ~~tsa~~asii~~l~Pv~~~ila~~~--~~Er~~~~~~ 132 (167)
...|++..+++.+...+...+.+.+. +-||.. +++
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~g-rr~ 74 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG-LRK 74 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT-TCT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chH
Confidence 35688899999888877776666543 567774 554
No 7
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.38 E-value=3.3e+02 Score=13.30 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=10.3
Q ss_pred HhhhHHHHHHHHHHH
Q 042874 107 ITNTIPAFTFTLAIL 121 (167)
Q Consensus 107 i~~l~Pv~~~ila~~ 121 (167)
++..+|++-.+++..
T Consensus 15 vlPiIPv~f~lLafV 29 (37)
T d2axtk1 15 VLPVIPVLFLALAFV 29 (37)
T ss_dssp HGGGHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 356778887777754
No 8
>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.77 E-value=63 Score=19.56 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=8.3
Q ss_pred CCCCCCcccccc
Q 042874 154 TNCPPSEEFLNH 165 (167)
Q Consensus 154 ~~~~~~~~~~~~ 165 (167)
.+|+.+.|+|||
T Consensus 66 YTChk~g~~Lnh 77 (87)
T d3d85d1 66 YTCHKGGEVLSH 77 (87)
T ss_dssp EEEEETTEEEEE
T ss_pred eeEeCCCcEeee
Confidence 555667788887
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.75 E-value=4.3e+02 Score=13.38 Aligned_cols=21 Identities=10% Similarity=-0.170 Sum_probs=13.4
Q ss_pred cccCchhHHHHHHHHHHHHHH
Q 042874 125 LKMMSWIEIIIIIIINNDTLT 145 (167)
Q Consensus 125 Er~~~~~~~~Gi~l~~~Gv~l 145 (167)
|+++..-+.+|+..++.+.+.
T Consensus 8 ~~ls~~E~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 8 TPTSPKEQAIGLSVTFLSFLL 28 (43)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc
Confidence 444334467888888777654
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.46 E-value=4.2e+02 Score=12.63 Aligned_cols=16 Identities=6% Similarity=-0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 042874 136 IIIINNDTLTSKMDKA 151 (167)
Q Consensus 136 i~l~~~Gv~li~~~~g 151 (167)
.++++.|+++.-.+.|
T Consensus 14 ~vi~~vG~FfYGsYsG 29 (34)
T d2axtj1 14 GVIVIVGLFFYGAYAG 29 (34)
T ss_dssp HHHHHHHHHHHHTTTS
T ss_pred hhHhheeeeeeeeecc
Done!