BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042875
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 24/221 (10%)
Query: 217 LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLES 276
L +FP+ ++ HL+ +D + ELP + + GLE L ++ + L LP +I +L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 277 LRHIS-AAGSAISQLPSSVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIMNCAV 335
LR +S A +++LP +A ++A + +
Sbjct: 152 LRELSIRACPELTELPEPLASTDA----------------SGEHQGLVNLQSLRLEWTGI 195
Query: 336 MEIPQEIAYLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPAL---PLCL 392
+P IA L +LKSL +R + +L +I L++ P + L
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 393 KYLHLTGCNMLRSLP---ELPLCLQELDATNCNRLQSLPEI 430
K L L C+ L +LP L++LD C L LP +
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 36/169 (21%)
Query: 147 VTLIEFPQISGKITRLY---LDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKL 203
V L +FP + +++ L +D + + E+P + + LE L L L+ + L
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASL 149
Query: 204 RSLVDLFVNGCLNLERFPEILEKM----EH-----LKRINLDGTAITELPSSFENL---- 250
L +L + C L PE L EH L+ + L+ T I LP+S NL
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 251 -------------------PGLEELFVSDCSKLDKLPDNIGNLESLRHI 280
P LEEL + C+ L P G L+ +
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 15/163 (9%)
Query: 104 CVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTL----IEFPQISG-- 157
+P+SI + L LS C L P L + V L +E+ I
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPL-ASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 158 -------KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLF 210
+ L + S + + +I L LE LDLR C L+ F L L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 211 VNGCLNLERFPEILEKMEHLKRINLDG-TAITELPSSFENLPG 252
+ C NL P + ++ L++++L G ++ LPS LP
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 330 IMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALP 389
I A++ +P+ A L L + D R + LPAS+K N L LP LP
Sbjct: 87 ITQNALISLPELPASLEYLDACDNRLSTLPELPASLKH-------LDVDNNQLTXLPELP 139
Query: 390 LCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIP 431
L+Y++ N L LPELP L+ L N N+L LPE+P
Sbjct: 140 ALLEYIN-ADNNQLTXLPELPTSLEVLSVRN-NQLTFLPELP 179
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 380 NMLQSLPALPLCLKYLHLTGC-NMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
N L SLP LP L+YL C N L +LPELP L+ LD N N+L LPE+P+
Sbjct: 90 NALISLPELPASLEYL--DACDNRLSTLPELPASLKHLDVDN-NQLTXLPELPA 140
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 346 SSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPLCLKYLHLTGCNMLRS 405
S L+ L + N SLP + N L SLPALP LK L ++G N L S
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKELIVSG-NRLTS 235
Query: 406 LPELPLCLQELDATNCNRLQSLPEIPS 432
LP LP L+EL + NRL SLP +PS
Sbjct: 236 LPVLPSELKEL-MVSGNRLTSLPMLPS 261
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 380 NMLQSLPALP--LCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
N L SLPALP LC + + N L SLP LP LQEL ++ N+L SLP +PS
Sbjct: 151 NQLASLPALPSELCKLWAY---NNQLTSLPMLPSGLQELSVSD-NQLASLPTLPS 201
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 380 NMLQSLPALPLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQSLPEIPS 432
N L SLPALP L+ L ++G N L SLP LP L EL + N L LP +PS
Sbjct: 71 NNLTSLPALPPELRTLEVSG-NQLTSLPVLPPGLLEL-SIFSNPLTHLPALPS 121
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 127/324 (39%), Gaps = 83/324 (25%)
Query: 122 GCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQS---AIEEVPSSIEC 178
G SL P +L + + C +L E P++ + L +D + A+ ++P +E
Sbjct: 82 GLSSLPELPPHLESLV------ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 179 L----TDLEVL-DLRDCKRLKRISTRFCKLRSLVDL------FVNGCLNLERFPEILEKM 227
L LE L +L++ LK I L+ L DL G LE PE L+ +
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNL 194
Query: 228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAI 287
L I D ++ +LP +LP E V+ + L++LP+ + NL L I A + +
Sbjct: 195 PFLTAIYADNNSLKKLP----DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL 249
Query: 288 SQLPSSVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIMNCAVMEIPQEIAYLSS 347
LP AL + D Y+ + E+PQ + +L
Sbjct: 250 KTLPDLPPSLEALNVRD-----------------------NYLTDLP--ELPQSLTFLD- 283
Query: 348 LKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPLCLKYLHLTGCNMLRSLP 407
N+ L LP L YL+ N +RSL
Sbjct: 284 -----------------------------VSENIFSGLSELPPNLYYLN-ASSNEIRSLC 313
Query: 408 ELPLCLQELDATNCNRLQSLPEIP 431
+LP L+EL+ +N N+L LP +P
Sbjct: 314 DLPPSLEELNVSN-NKLIELPALP 336
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 111/260 (42%), Gaps = 31/260 (11%)
Query: 181 DLEVLDLRDC--KRLKRISTRFCKLRSLVDL------FVNGCLNLERFPEILEKMEHLKR 232
++ V LRDC ++ + L SL +L V C +L PE+ + ++ L
Sbjct: 59 EMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLV 118
Query: 233 INLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS 292
N + A+++LP P LE L VS+ ++L+KLP+ + N L+ I +++ +LP
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSN-NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD 170
Query: 293 SVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIMNCAVMEIPQEIAYLSSLKSLD 352
L+F Y N ++ ++P L S+
Sbjct: 171 LPPS------LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI---- 220
Query: 353 LRGNN-FESLPASIKQXXXXXXXXXXXXNMLQSLPALPLCLKYLHLTGCNMLRSLPELPL 411
+ GNN E LP Q N+L++LP LP L+ L++ N L LPELP
Sbjct: 221 VAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD-NYLTDLPELPQ 277
Query: 412 CLQELDATNCNRLQSLPEIP 431
L LD + N L E+P
Sbjct: 278 SLTFLDVSE-NIFSGLSELP 296
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 54 GLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQ----PWEGEK------- 102
GL LP L YL+ + +R L P +L ELN+ +K+ + P E+
Sbjct: 291 GLSELPPNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIELPALPPRLERLIASFNH 348
Query: 103 -ACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITR 161
A VP QN K L LR FP V + +N L E P++ + +
Sbjct: 349 LAEVPELPQNLKQLHV----EYNPLREFPDIPESVEDLRMN----SHLAEVPELPQNLKQ 400
Query: 162 LYLDQSAIEEVPSSIECLTDLEV 184
L+++ + + E P E + DL +
Sbjct: 401 LHVETNPLREFPDIPESVEDLRM 423
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 58 LPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWE 99
LP+ L+ LH +T PLR P P+++ +L + +V P+E
Sbjct: 394 LPQNLKQLHVETNPLREFPD--IPESVEDLRMNSERVVDPYE 433
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 171 EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP-EILEKMEH 229
VP+ I T+ ++L L D + K F L +L +L++ G L P + + +
Sbjct: 33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQ 89
Query: 230 LKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288
L ++L +T LPS+ F+ L L+ELF+ C+KL +LP I L L H++ + +
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 289 QLPSSVAD 296
+P D
Sbjct: 149 SIPHGAFD 156
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
FLDLS+ + L P AF ++S+L++L F+ ++ FP + N L+ L L ++
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 69 -TYPLRILPSNFKPKNLVE 86
L+ PS+ NL +
Sbjct: 239 KKQELQHFPSSLAFLNLTQ 257
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 38/217 (17%)
Query: 155 ISGKITRLYLDQSAIEEVPSSI-ECLTDLEVLDL-------RDCKRLKRISTRFCKLRSL 206
I TRL L+ + ++ +P + + LT L L L + C T K
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY--- 82
Query: 207 VDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDK 266
+DL NG + + LE++EHL + + ++E S F +L L L +S
Sbjct: 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA 141
Query: 267 LPDNIGNLESLRHISAAGSAISQ--LPSSVADSNALLILDFSRCKXXXXXXXXXXXXXXX 324
L SL + AG++ + LP + L LD S+C+
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---------- 191
Query: 325 XXXXYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESL 361
P LSSL+ L++ NNF SL
Sbjct: 192 --------------PTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Query: 141 INFSYCVTLIEFPQISGKITRLYLDQS--AIEEVPSSIECLTDLEVLDLRDCKRLKRIS- 197
++F C + +F S K YLD S + + S+ L LE LD + LK++S
Sbjct: 359 LSFKGCCSQSDFGTTSLK----YLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSE 413
Query: 198 -TRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE--LPSSFENLPGLE 254
+ F LR+L+ L ++ F I + L+ + + G + E LP F L L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 255 ELFVSDCSKLDKL-PDNIGNLESLRHISAAGSAISQLPSSVAD 296
L +S C +L++L P +L SL+ ++ A + + +P + D
Sbjct: 474 FLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 189 DC--KRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
DC K L + T ++ L+ N LE P + +++ L R++LD +T LP+
Sbjct: 15 DCSGKSLASVPTGIPTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAG 72
Query: 247 -FENLPGLEELFVSDCSKLDKLPDN-IGNLESLRHI 280
F+ L L +L ++D ++L +P NL+SL HI
Sbjct: 73 VFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHI 107
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYL 65
FLDLS+ + L P AF ++S+L++L F+ ++ FP + N L+ L L ++
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 159 ITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL 217
+T L L + ++ +P+ + + LT+L+ L L + + F KL +L L++ L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN-QL 145
Query: 218 ERFPE-ILEKMEHLKRINLDGTAITELPSS-FENLPGLEELFVSDCSKLDKLPDNI-GNL 274
+ P+ + +K+ +L R++LD + LP F+ L L++L ++D ++L +PD + L
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND-NQLKSVPDGVFDRL 204
Query: 275 ESLRHI 280
SL HI
Sbjct: 205 TSLTHI 210
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 345 LSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPL----CLKYLHLTGC 400
L++L L L GN +SLP + N LQSLP L YL+L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH- 142
Query: 401 NMLRSLPELPL----CLQELDATNCNRLQSLPE 429
N L+SLP+ L LD N N+LQSLPE
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDN-NQLQSLPE 174
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 189 DC--KRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
DC K L + T ++ L+ N LE P + +++ L R++LD +T LP+
Sbjct: 23 DCSGKSLASVPTGIPTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAG 80
Query: 247 -FENLPGLEELFVSDCSKLDKLPDN-IGNLESLRHI 280
F+ L L +L ++D ++L +P NL+SL HI
Sbjct: 81 VFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHI 115
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYL 65
FLDLS+ + L P AF ++S+L++L F+ ++ FP + N L+ L L ++
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 189 DC--KRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS 246
DC K L + T ++ L+ N LE P + +++ L R++LD +T LP+
Sbjct: 15 DCSGKSLASVPTGIPTTTQVLYLYDNRITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAG 72
Query: 247 -FENLPGLEELFVSDCSKLDKLPDN-IGNLESLRHI 280
F+ L L +L ++D ++L +P NL SL HI
Sbjct: 73 VFDKLTQLTQLSLND-NQLKSIPRGAFDNLRSLTHI 107
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 345 LSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPL----CLKYLHLTGC 400
L++L L L GN +SLP + N LQSLP L YL+L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AH 142
Query: 401 NMLRSLPELPL----CLQELDATNCNRLQSLPE 429
N L+SLP+ L ELD + N+LQSLPE
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPE 174
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 226 KMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS 285
K + L R+ L+G ++TELP+ +NL L L +S ++L LP +G+ L++ +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN 303
Query: 286 AISQLP 291
++ LP
Sbjct: 304 MVTTLP 309
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 24/29 (82%)
Query: 159 ITRLYLDQSAIEEVPSSIECLTDLEVLDL 187
+TRLYL+ +++ E+P+ I+ L++L VLDL
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 329 YIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASI 365
Y+ ++ E+P EI LS+L+ LDL N SLPA +
Sbjct: 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 338 IPQEIAYLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPL----CLK 393
IP + YL DL N+ +SLP + N LQSLP L
Sbjct: 26 IPAQTTYL------DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 394 YLHLTGCNMLRSLPELPL----CLQELDATNCNRLQSLPE 429
YL+L+ N L+SLP L+EL A N N+LQSLP+
Sbjct: 80 YLNLS-TNQLQSLPNGVFDKLTQLKEL-ALNTNQLQSLPD 117
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 46/234 (19%)
Query: 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWD 68
L LS+ ++ GAF ++NL L+ + + I PNG KL+ L
Sbjct: 92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-------PNGAFVYLSKLKELWLR 144
Query: 69 TYPLRILPS---NFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKS 125
P+ +PS N P L L+L GE ++ Y+S +FEG +
Sbjct: 145 NNPIESIPSYAFNRIPS-LRRLDL----------GE-------LKRLSYISEGAFEGLSN 186
Query: 126 LRSFPSNLHFVCPVTINFSYCVTLIEFPQISG--KITRLYLDQSAIEEV-PSSIECLTDL 182
LR +N + C L E P ++ K+ L L + + + P S + L L
Sbjct: 187 LRY------------LNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 183 EVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP-EILEKMEHLKRINL 235
+ L + + F L+SLV++ + NL P ++ + HL+RI+L
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINL-AHNNLTLLPHDLFTPLHHLERIHL 286
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 129/312 (41%), Gaps = 84/312 (26%)
Query: 113 KYLSALSFEG-CK-SLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIE 170
+YL++ +FEG C S+ S H ++ + C T ++ L L + +
Sbjct: 240 QYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFT---------RVQELDLTAAHLN 290
Query: 171 EVPSSIECLTDLE--VLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL-NLERFPEILEKM 227
+PS IE + L+ VL+ +L +I+ SL DL++ G + L+ LEK+
Sbjct: 291 GLPSGIEGMNSLKKLVLNANSFDQLCQINA--ASFPSLRDLYIKGNMRKLDLGTRCLEKL 348
Query: 228 EHLKRINLDGTAITE----------------LPSSFENLPGLEELFVSDCSKLDKLPDNI 271
E+L++++L + I L S+ GLE+ +C +L+ L
Sbjct: 349 ENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 272 GNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKXXXXXXXXXXXXXXXXXXXYIM 331
+L H+ A S L + L +L+ S C ++
Sbjct: 409 THL----HVKAPHSPFQNL-------HLLRVLNLSHC---------------------LL 436
Query: 332 NCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPLC 391
+ + + +A L L+ L+L+GN+F+ SI + N+LQ + +L +
Sbjct: 437 DTSNQHL---LAGLQDLRHLNLQGNSFQD--GSISK-----------TNLLQMVGSLEIL 480
Query: 392 LKYLHLTGCNML 403
+ L+ CN+L
Sbjct: 481 I----LSSCNLL 488
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNL 217
+T LYLD + VP + L ++DL + R+ +S + F + L+ L L+
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLI----LSY 87
Query: 218 ERF----PEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVS 259
R P + ++ L+ ++L G I+ +P +F +L L L +
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
Length = 247
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 128 SFPSNLHFV-CPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDL 182
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 30 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 85
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
pdb|4FF7|B Chain B, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
Length = 248
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 128 SFPSNLHFV-CPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDL 182
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 31 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 86
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|7TIM|A Chain A, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
pdb|7TIM|B Chain B, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
Length = 247
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 128 SFPSNLHFV-CPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDL 182
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 30 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 85
>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NF0|B Chain B, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|B Chain B, Triosephosphate Isomerase In Complex With Dhap
Length = 247
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 128 SFPSNLHFV-CPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDL 182
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 30 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 85
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 128 SFPSNLHFV-CPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDL 182
S P N+ V CP Y V+L++ PQ++ YL S +S++ + D+
Sbjct: 31 SIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDV 86
>pdb|4FDW|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Bacova_01565) From Bacteroides Ovatus Atcc 8483 At 2.05
A Resolution
Length = 401
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 203 LRSLVD-LFVNGCLNLERFPEILEKME--------HLKRINLDGTAITELPSSFENLPGL 253
L+S+ D F N + FP LE+++ +LK+ +L T IT+LP+S G+
Sbjct: 146 LKSIGDXAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205
Query: 254 EEL 256
EE+
Sbjct: 206 EEV 208
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 158 KITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLN 216
K+ RLYL ++ ++E+P + + L +L V + K K + ++ +V+L N +
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM-IVVELGTNPLKS 159
Query: 217 LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLES 276
+ M+ L I + T IT +P P L EL + D +K+ K+ + +L+
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHL-DGNKITKV--DAASLKG 214
Query: 277 LRHISAAGSAISQLPSSVADSNAL 300
L +++ G + + + S D+ +L
Sbjct: 215 LNNLAKLGLSFNSI--SAVDNGSL 236
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 158 KITRLYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLN 216
K+ RLYL ++ ++E+P + + L +L V + K K + ++ +V+L N +
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM-IVVELGTNPLKS 159
Query: 217 LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLES 276
+ M+ L I + T IT +P P L EL + D +K+ K+ + +L+
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHL-DGNKITKV--DAASLKG 214
Query: 277 LRHISAAGSAISQLPSSVADSNAL 300
L +++ G + + + S D+ +L
Sbjct: 215 LNNLAKLGLSFNSI--SAVDNGSL 236
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 330 IMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASI 365
+ N +M IP+++ +L +L+ L++ N +S+P +
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Baccac_03700) From Bacteroides Caccae Atcc 43185 At
2.07 A Resolution
Length = 404
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 203 LRSLVD-LFVNGCLNLERFPEILEKME--------HLKRINLDGTAITELPSSFENLPGL 253
L+S+ D F N + FP LE++E +LK+ +L T +T+LP+S G+
Sbjct: 149 LQSIGDXAFFNSTVQEVVFPTTLEQLEENIFYYCRNLKKADLSRTKLTKLPASTFVYAGV 208
Query: 254 EEL 256
EE+
Sbjct: 209 EEV 211
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 243 LPSSFENLPGLEELFVSDCSKL-DKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNAL 300
+PSS NLP L L++ + L +P I L L ++ + +S +P ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 301 LILDFS 306
+ LDFS
Sbjct: 128 VTLDFS 133
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 344 YLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPL----CLKYLHLTG 399
+L+ L L L GN +SLP+ + N LQS+PA L+ L L+
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS- 163
Query: 400 CNMLRSLPE 408
N L+S+P
Sbjct: 164 TNQLQSVPH 172
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 344 YLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPALPL----CLKYLHLTG 399
+L+ L L L GN +SLP+ + N LQS+PA L+ L L+
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS- 163
Query: 400 CNMLRSLPE 408
N L+S+P
Sbjct: 164 TNQLQSVPH 172
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 334 AVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQXXXXXXXXXXXXNMLQSLPA------ 387
+ +P I SS L+L N +SLP + N +QSLP
Sbjct: 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 388 LPLCLKYLHLTGCNMLRSLP----ELPLCLQELDATNCNRLQSLPE 429
L + YLH N L+SLP + L+EL A + N+L+S+P+
Sbjct: 76 TKLTILYLHE---NKLQSLPNGVFDKLTQLKEL-ALDTNQLKSVPD 117
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 226 KMEHLKRINLDGTAITE--LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279
+M + +++ G A + SF N +E +V D S + LPDNI LES+
Sbjct: 157 EMVDVSMMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQ 212
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279
SF N +E +V D S + LPDNI LES+
Sbjct: 179 SFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQ 212
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279
SF N +E +V D S + LPDNI LES+
Sbjct: 124 SFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQ 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,484,898
Number of Sequences: 62578
Number of extensions: 447520
Number of successful extensions: 981
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 132
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)