Query 042875
Match_columns 432
No_of_seqs 226 out of 3187
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 10:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-39 4.8E-44 338.6 26.4 381 6-401 70-463 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.3E-39 9.3E-44 336.4 24.9 405 9-429 144-589 (968)
3 PLN03210 Resistant to P. syrin 100.0 2.5E-30 5.4E-35 270.9 26.3 368 1-406 530-909 (1153)
4 KOG4194 Membrane glycoprotein 100.0 6.4E-32 1.4E-36 244.3 3.8 377 8-400 55-449 (873)
5 KOG4194 Membrane glycoprotein 100.0 2.5E-30 5.3E-35 234.1 6.3 379 27-420 49-448 (873)
6 KOG0444 Cytoskeletal regulator 100.0 9.5E-31 2.1E-35 238.8 -4.3 361 10-387 12-380 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 8.5E-31 1.8E-35 239.1 -5.1 362 28-408 6-380 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 3.7E-30 8E-35 223.1 -6.7 389 10-422 73-539 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 1.9E-28 4.2E-33 212.5 -7.2 318 51-382 152-541 (565)
10 KOG0618 Serine/threonine phosp 99.9 5.5E-27 1.2E-31 223.1 0.5 390 10-424 26-489 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.5E-27 212.4 24.2 315 21-385 580-909 (1153)
12 KOG0618 Serine/threonine phosp 99.9 1E-25 2.3E-30 214.5 0.3 374 7-404 47-490 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 2.1E-18 4.5E-23 169.4 16.6 221 136-386 242-462 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 1.9E-18 4.1E-23 169.7 15.2 263 61-365 202-465 (788)
15 KOG4237 Extracellular matrix p 99.7 2.2E-19 4.8E-24 156.2 -1.0 245 6-264 68-359 (498)
16 cd00116 LRR_RI Leucine-rich re 99.7 9.5E-18 2.1E-22 153.9 2.0 186 174-359 75-291 (319)
17 PRK15370 E3 ubiquitin-protein 99.7 2.8E-16 6.1E-21 155.4 12.4 242 136-402 178-427 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 8.1E-16 1.8E-20 152.1 14.7 245 114-382 179-428 (754)
19 KOG4237 Extracellular matrix p 99.6 1.1E-17 2.3E-22 145.8 -5.8 128 57-191 64-199 (498)
20 cd00116 LRR_RI Leucine-rich re 99.6 4.7E-16 1E-20 142.6 4.4 210 172-381 43-290 (319)
21 KOG0617 Ras suppressor protein 99.5 2E-16 4.3E-21 122.5 -3.7 167 73-294 24-192 (264)
22 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.6E-21 123.7 -5.2 154 227-382 32-186 (264)
23 KOG1909 Ran GTPase-activating 99.3 8.3E-14 1.8E-18 120.1 -3.1 131 228-358 157-310 (382)
24 KOG4658 Apoptotic ATPase [Sign 99.2 3.2E-11 6.9E-16 121.8 8.5 101 114-214 546-652 (889)
25 KOG4658 Apoptotic ATPase [Sign 99.2 1.2E-11 2.5E-16 124.9 4.5 249 155-407 521-787 (889)
26 KOG3207 Beta-tubulin folding c 99.2 4.5E-12 9.7E-17 112.6 1.1 213 170-383 111-340 (505)
27 KOG1909 Ran GTPase-activating 99.1 2E-11 4.4E-16 105.6 1.7 176 247-422 88-309 (382)
28 KOG3207 Beta-tubulin folding c 99.0 3.6E-11 7.8E-16 107.0 0.5 203 61-287 122-338 (505)
29 PF14580 LRR_9: Leucine-rich r 99.0 8.9E-10 1.9E-14 89.3 5.7 123 274-399 18-149 (175)
30 KOG1259 Nischarin, modulator o 98.9 4.2E-10 9E-15 95.6 2.3 127 271-401 280-410 (490)
31 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 102.3 6.4 175 204-383 116-291 (394)
32 KOG0532 Leucine-rich repeat (L 98.9 2E-10 4.4E-15 105.6 0.2 194 180-380 75-271 (722)
33 COG4886 Leucine-rich repeat (L 98.9 1.4E-09 3E-14 102.8 4.6 192 10-221 98-294 (394)
34 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.5E-14 87.8 4.1 56 61-125 20-76 (175)
35 KOG4341 F-box protein containi 98.9 8.7E-11 1.9E-15 104.1 -3.5 277 56-356 134-436 (483)
36 KOG2120 SCF ubiquitin ligase, 98.8 5.2E-11 1.1E-15 100.9 -5.7 174 228-401 185-374 (419)
37 KOG4341 F-box protein containi 98.8 2.3E-10 5E-15 101.4 -3.0 252 175-426 159-441 (483)
38 KOG1259 Nischarin, modulator o 98.8 1.5E-09 3.3E-14 92.2 0.9 129 250-383 283-413 (490)
39 KOG2120 SCF ubiquitin ligase, 98.7 5.9E-10 1.3E-14 94.6 -3.8 176 181-356 186-373 (419)
40 KOG0532 Leucine-rich repeat (L 98.6 2.2E-09 4.8E-14 99.0 -2.8 170 7-194 77-248 (722)
41 PF13855 LRR_8: Leucine rich r 98.5 8.6E-08 1.9E-12 63.7 3.0 59 323-381 1-61 (61)
42 PLN03150 hypothetical protein; 98.5 6.8E-07 1.5E-11 88.7 9.9 107 300-407 420-532 (623)
43 PLN03150 hypothetical protein; 98.4 9.9E-07 2.1E-11 87.6 9.3 108 324-431 419-535 (623)
44 PF13855 LRR_8: Leucine rich r 98.3 8E-07 1.7E-11 59.0 4.1 56 159-214 3-59 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.3 1.4E-07 3.1E-12 79.4 0.5 87 80-170 28-133 (388)
46 KOG0531 Protein phosphatase 1, 98.3 1E-07 2.2E-12 90.3 -1.7 149 156-310 161-317 (414)
47 PRK15386 type III secretion pr 98.2 5.5E-06 1.2E-10 75.9 9.3 159 247-424 48-213 (426)
48 KOG1859 Leucine-rich repeat pr 98.2 3.6E-08 7.8E-13 93.7 -6.6 122 8-149 167-292 (1096)
49 KOG2982 Uncharacterized conser 98.2 9.2E-07 2E-11 75.6 2.3 208 179-386 44-266 (418)
50 KOG0531 Protein phosphatase 1, 98.2 3.5E-07 7.5E-12 86.7 -0.3 231 12-265 79-319 (414)
51 COG5238 RNA1 Ran GTPase-activa 98.1 1.9E-06 4.2E-11 72.7 3.8 107 295-401 154-283 (388)
52 KOG1859 Leucine-rich repeat pr 98.1 2.6E-08 5.7E-13 94.6 -8.3 179 173-359 102-292 (1096)
53 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 8E-11 51.1 3.7 38 324-361 2-39 (44)
54 PRK15386 type III secretion pr 98.1 2.3E-05 5.1E-10 71.8 9.6 32 346-379 156-187 (426)
55 KOG2982 Uncharacterized conser 98.1 1.7E-06 3.7E-11 74.0 1.8 197 179-375 70-285 (418)
56 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.4E-10 49.0 3.8 37 346-382 1-37 (44)
57 KOG1644 U2-associated snRNP A' 97.9 1.1E-05 2.3E-10 65.4 4.0 77 10-95 47-126 (233)
58 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.6E-11 66.1 -1.3 85 296-381 51-135 (177)
59 KOG3665 ZYG-1-like serine/thre 97.8 8.6E-06 1.9E-10 80.9 2.0 80 204-285 122-205 (699)
60 KOG3665 ZYG-1-like serine/thre 97.7 9.7E-06 2.1E-10 80.6 0.7 150 227-378 121-284 (699)
61 KOG1644 U2-associated snRNP A' 97.7 8.8E-05 1.9E-09 60.2 5.6 131 30-192 20-152 (233)
62 KOG1947 Leucine rich repeat pr 97.6 8.4E-06 1.8E-10 79.3 -2.3 35 179-213 187-223 (482)
63 KOG4579 Leucine-rich repeat (L 97.2 2.6E-05 5.6E-10 59.1 -2.4 16 229-244 54-69 (177)
64 KOG2123 Uncharacterized conser 97.2 9.1E-06 2E-10 69.0 -5.7 100 28-142 18-123 (388)
65 KOG1947 Leucine rich repeat pr 97.0 9.5E-05 2.1E-09 72.0 -1.4 131 294-424 239-389 (482)
66 KOG2739 Leucine-rich acidic nu 96.5 0.002 4.4E-08 54.7 2.9 86 271-356 61-153 (260)
67 KOG2123 Uncharacterized conser 96.5 0.00019 4.2E-09 61.2 -3.4 96 11-119 25-123 (388)
68 KOG2739 Leucine-rich acidic nu 95.9 0.0045 9.7E-08 52.7 2.0 84 61-149 44-129 (260)
69 PF13306 LRR_5: Leucine rich r 95.9 0.039 8.4E-07 42.7 7.2 83 175-260 7-90 (129)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.004 8.6E-08 31.3 0.7 19 348-366 2-20 (22)
71 PF13306 LRR_5: Leucine rich r 95.5 0.061 1.3E-06 41.6 7.1 58 200-259 8-66 (129)
72 PF13504 LRR_7: Leucine rich r 95.0 0.018 3.8E-07 26.8 1.4 15 347-361 2-16 (17)
73 KOG3864 Uncharacterized conser 94.9 0.0039 8.5E-08 50.9 -1.4 77 348-424 103-189 (221)
74 PF00560 LRR_1: Leucine Rich R 94.3 0.021 4.5E-07 28.6 0.9 13 30-42 1-13 (22)
75 KOG4308 LRR-containing protein 93.4 0.00083 1.8E-08 64.1 -9.6 86 274-359 203-303 (478)
76 KOG4308 LRR-containing protein 92.4 0.0021 4.7E-08 61.4 -8.4 114 270-383 167-304 (478)
77 smart00367 LRR_CC Leucine-rich 92.2 0.089 1.9E-06 27.6 1.3 16 411-426 2-17 (26)
78 KOG3864 Uncharacterized conser 91.3 0.037 7.9E-07 45.4 -1.2 63 293-355 120-185 (221)
79 smart00364 LRR_BAC Leucine-ric 90.9 0.15 3.3E-06 26.5 1.3 19 411-430 2-20 (26)
80 smart00369 LRR_TYP Leucine-ric 89.9 0.3 6.4E-06 25.5 1.9 19 346-364 2-20 (26)
81 smart00370 LRR Leucine-rich re 89.9 0.3 6.4E-06 25.5 1.9 19 346-364 2-20 (26)
82 KOG0473 Leucine-rich repeat pr 88.2 0.032 7E-07 46.8 -3.8 94 17-126 30-124 (326)
83 PF13516 LRR_6: Leucine Rich r 85.3 0.38 8.2E-06 24.5 0.6 16 28-43 1-16 (24)
84 KOG0473 Leucine-rich repeat pr 77.2 0.21 4.5E-06 42.1 -3.2 83 9-100 46-129 (326)
85 smart00365 LRR_SD22 Leucine-ri 74.8 2.2 4.8E-05 22.3 1.4 15 82-96 2-16 (26)
86 KOG3763 mRNA export factor TAP 74.2 2.1 4.6E-05 41.0 2.0 77 321-398 216-309 (585)
87 KOG3763 mRNA export factor TAP 66.8 1.4 3E-05 42.2 -0.8 16 27-42 216-231 (585)
88 smart00368 LRR_RI Leucine rich 65.1 3.4 7.3E-05 22.0 0.8 15 29-43 2-16 (28)
89 PF05725 FNIP: FNIP Repeat; I 45.6 32 0.0007 20.5 3.0 31 59-89 11-41 (44)
90 PF07725 LRR_3: Leucine Rich R 30.4 37 0.0008 16.5 1.2 18 83-100 1-18 (20)
91 PF06540 GMAP: Galanin message 20.6 20 0.00044 23.0 -0.9 20 413-432 33-52 (62)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-39 Score=338.59 Aligned_cols=381 Identities=21% Similarity=0.292 Sum_probs=278.2
Q ss_pred eeEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCcccc-chhhhcceeecCCCCCCCCCCCCCCCCc
Q 042875 6 EGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLE-YLPEKLRYLHWDTYPLRILPSNFKPKNL 84 (432)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~~~~~l~~~~~~~~L 84 (432)
+-+.+|++++.+....+..|..+++|+.|++++|++.+ .+|..+. .+. +|++|++++|.+........+++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~------~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L 142 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG------PIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNL 142 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC------cCChHHhccCC-CCCEEECcCCccccccCccccCCC
Confidence 34567788887777778899999999999999999986 6787765 664 999999999987643334567889
Q ss_pred eeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC---CCCCcc
Q 042875 85 VELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ---ISGKIT 160 (432)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~ 160 (432)
++|++++|.++ +. +|..++.+++|++|++++|...+.+| .+.++++|++|++++|.+...+|. .+.+|+
T Consensus 143 ~~L~Ls~n~~~----~~---~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 143 ETLDLSNNMLS----GE---IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred CEEECcCCccc----cc---CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 99999999886 33 67778889999999999888777777 456688899999988887776664 345778
Q ss_pred EEEecccccc-cccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875 161 RLYLDQSAIE-EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA 239 (432)
Q Consensus 161 ~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (432)
.|++.+|.+. .+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 8888888775 577788888888888888888777788888888888888888887777778788888888888888888
Q ss_pred cc-ccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875 240 IT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRS 317 (432)
Q Consensus 240 ~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (432)
+. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+..+..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 77 56667777888888888888777777777777888888888888776 56667777777888888777765555543
Q ss_pred hhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCC---CCCCc
Q 042875 318 LLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA---LPLCL 392 (432)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~L 392 (432)
+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++ .+|..+..++.|+.+++++|.+.+.++. .+++|
T Consensus 376 -~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 376 -LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred -HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 2244556666666655554 5555555555666666555555 4455555555555555555554444332 22344
Q ss_pred cEEeccCCC
Q 042875 393 KYLHLTGCN 401 (432)
Q Consensus 393 ~~L~l~~c~ 401 (432)
+.|++.+|.
T Consensus 455 ~~L~L~~n~ 463 (968)
T PLN00113 455 QMLSLARNK 463 (968)
T ss_pred cEEECcCce
Confidence 444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.3e-39 Score=336.43 Aligned_cols=405 Identities=22% Similarity=0.285 Sum_probs=281.1
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCCCC-CCCCcee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPSNF-KPKNLVE 86 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~~~-~~~~L~~ 86 (432)
.+|+++|.+....+..+..+++|++|++++|.+.+ .+|..+..++ +|++|++++|.+. .+|..+ ++++|++
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG------KIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccc------cCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 36677887766677788888899999998888876 6777777885 8888888888764 455544 7788888
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCC---CCCccEE
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQI---SGKITRL 162 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L 162 (432)
|++++|.++. . +|..++++++|++|++++|...+.+| .+..+++|++|++++|.+....|.. +.+|+.|
T Consensus 217 L~L~~n~l~~----~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 217 IYLGYNNLSG----E---IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred EECcCCccCC----c---CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 8888887763 3 66667777778888887777666666 4555777777777777666555543 3456667
Q ss_pred Eecccccc-cccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875 163 YLDQSAIE-EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT 241 (432)
Q Consensus 163 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (432)
++++|.+. .+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++++|.++
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 77766654 45555666666666666666666556666666666666666666655556666666666666666665554
Q ss_pred -ccCcc------------------------cCCCCCccEEeecCCCCCCccccccCCccccccccccccccc-ccCcccc
Q 042875 242 -ELPSS------------------------FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVA 295 (432)
Q Consensus 242 -~~~~~------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~ 295 (432)
.+|.. +..+++|+.|++++|.+.+..|..+..++.|+.+++++|.+. ..+..+.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 33333 444555555555555555555555555555555555555554 3334444
Q ss_pred CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCe
Q 042875 296 DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCS 373 (432)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~ 373 (432)
.+++|+.|++++|.+.+..+.. ...++|+.|++++|++.. +|..+..+++|+.|++++|.+. .+|..+..+++|++
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 527 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDS--FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527 (968)
T ss_pred cCCCCcEEECcCceeeeecCcc--cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCE
Confidence 5566666666666655544442 134678888888888876 7777888999999999999888 78888889999999
Q ss_pred eeccCCCCCcccCCC---CCCccEEeccCCCCccccCC---CCCccceeccccccccccCCC
Q 042875 374 LDLRRCNMLQSLPAL---PLCLKYLHLTGCNMLRSLPE---LPLCLQELDATNCNRLQSLPE 429 (432)
Q Consensus 374 L~l~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~lp~ 429 (432)
|++++|.+.+.+|.. +++|+.|++++|.....+|. ....|+.|++++|+....+|+
T Consensus 528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 999999988888743 46899999999877667776 456799999999876666664
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=2.5e-30 Score=270.95 Aligned_cols=368 Identities=34% Similarity=0.583 Sum_probs=247.4
Q ss_pred CcccceeEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCC
Q 042875 1 GTDAIEGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFK 80 (432)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~ 80 (432)
|+..+++|++|++......+.+.+|.+|++|+.|.+..+...........+|..+..+|.+|+.|.+.++.++.+|..+.
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~ 609 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR 609 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence 56778999999999888888889999999999999976643211112236788888888789999999999999999999
Q ss_pred CCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCcc
Q 042875 81 PKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKIT 160 (432)
Q Consensus 81 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~ 160 (432)
+.+|++|++.++.+..+ +..+..+++|+.|+++++.....+|.+..+++|+.|++++|.....+
T Consensus 610 ~~~L~~L~L~~s~l~~L--------~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l-------- 673 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKL--------WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL-------- 673 (1153)
T ss_pred ccCCcEEECcCcccccc--------ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc--------
Confidence 99999999999998864 44458899999999999888888888888999999999998766444
Q ss_pred EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875 161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI 240 (432)
Q Consensus 161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 240 (432)
|..+.++++|+.|++++|...+.+|..+ ++++|+.|.+++|.....+|.. ..+|++|+++++.+
T Consensus 674 ------------p~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 674 ------------PSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred ------------chhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 4445555666666666665555555433 4566666666666544444422 34566666666666
Q ss_pred cccCcccCCCCCccEEeecCCCCCC-------ccccccCCcccccccccccccc-cccCccccCCCCCcEEeccCCCCCC
Q 042875 241 TELPSSFENLPGLEELFVSDCSKLD-------KLPDNIGNLESLRHISAAGSAI-SQLPSSVADSNALLILDFSRCKGLV 312 (432)
Q Consensus 241 ~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~ 312 (432)
..+|..+ .+++|+.|.+.++.... ..+......++|+.|++++|.. ..+|..++++++|+.|++++|....
T Consensus 738 ~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 738 EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 6555433 34556655555432110 0011112235666666666643 3566666666777777776666555
Q ss_pred CCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC---C
Q 042875 313 SLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA---L 388 (432)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~ 388 (432)
.+|... .+++|+.|++++|.... +|. ..++|+.|++++|.++.+|.++..+++|+.|++++|+.++.+|. .
T Consensus 817 ~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 817 TLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred eeCCCC--CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 555432 45667777777664333 332 13466777777777777776677777777777777666666653 2
Q ss_pred CCCccEEeccCCCCcccc
Q 042875 389 PLCLKYLHLTGCNMLRSL 406 (432)
Q Consensus 389 ~~~L~~L~l~~c~~l~~l 406 (432)
+.+|+.+++.+|..++.+
T Consensus 892 L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 892 LKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccCCCeeecCCCcccccc
Confidence 345666677777666544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=6.4e-32 Score=244.30 Aligned_cols=377 Identities=21% Similarity=0.198 Sum_probs=297.2
Q ss_pred EeeccCCceecccCchhhccc--ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCc
Q 042875 8 IFLDLSKIKCINLDPGAFTNM--SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNL 84 (432)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L 84 (432)
.-+|.+++.+..++-..+... +.-+.||+++|++.++ -+..+..+| +|+.+++.+|.++.+|... ...+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i------d~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl 127 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI------DFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHL 127 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccC------cHHHHhcCC-cceeeeeccchhhhcccccccccce
Confidence 346777776655544444332 3445699999999863 344567787 9999999999999999888 44569
Q ss_pred eeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCcccccccCC---CCCCc
Q 042875 85 VELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVTLIEFPQ---ISGKI 159 (432)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L 159 (432)
+.|+|.+|.|+.+. .+.++-++.|++|+++.|.+ ++++ .+-.-.++++|++++|++++--.. .+.+|
T Consensus 128 ~~L~L~~N~I~sv~-------se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 128 EKLDLRHNLISSVT-------SEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred eEEeeecccccccc-------HHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 99999999988653 23477888999999998654 4444 556668899999999988754333 44578
Q ss_pred cEEEecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875 160 TRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT 238 (432)
Q Consensus 160 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (432)
..|.++.|+++.+|. .|.++++|+.|++..|++...-...|.++++|+.|.+..|.+..--...|-.+.++++|+++.|
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 889999999999986 6677999999999998865554567899999999999998877666667778999999999999
Q ss_pred ccccc-CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCch
Q 042875 239 AITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPR 316 (432)
Q Consensus 239 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~ 316 (432)
+++.. ..++..+++|+.|+++.|.+...-+..|..+++|++|+++.|++..++ ..+..+..|+.|.++.|. ++.+..
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e 358 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE 358 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh
Confidence 99954 456788999999999999888777788889999999999999999665 457778899999999987 344555
Q ss_pred hhhcCCCCccEEEeeccCCCC----CchhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccCCCC--
Q 042875 317 SLLLGLSSLGLLYIMNCAVME----IPQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLPALP-- 389 (432)
Q Consensus 317 ~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-- 389 (432)
..|.++++|++|++..|.+.. -...+..+++|+.|.+.||++..+| ..+.++..|++|+|.+|.+.+.-+..+
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 556688999999999998776 3445677999999999999999887 467899999999999999766555433
Q ss_pred CCccEEeccCC
Q 042875 390 LCLKYLHLTGC 400 (432)
Q Consensus 390 ~~L~~L~l~~c 400 (432)
..|++|.+..-
T Consensus 439 m~Lk~Lv~nSs 449 (873)
T KOG4194|consen 439 MELKELVMNSS 449 (873)
T ss_pred chhhhhhhccc
Confidence 25777665543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-30 Score=234.09 Aligned_cols=379 Identities=20% Similarity=0.179 Sum_probs=292.5
Q ss_pred ccccce-eeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceeeeeccccccccCCCccc
Q 042875 27 NMSNLR-LLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVELNLRFSKVEQPWEGEKA 103 (432)
Q Consensus 27 ~l~~L~-~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~ 103 (432)
.|+... .||.++..+..++ -..--+.+|..-+.|++++|.+..+... .++++|+++++..|.++.
T Consensus 49 ~c~c~~~lldcs~~~lea~~-----~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~------- 116 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAID-----KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR------- 116 (873)
T ss_pred cCCCCceeeecCcccccccc-----ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-------
Confidence 344443 4777777665321 1111234555788899999998766555 399999999999999986
Q ss_pred ccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCCC---CCccEEEecccccccccc-cccC
Q 042875 104 CVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQIS---GKITRLYLDQSAIEEVPS-SIEC 178 (432)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~-~~~~ 178 (432)
||.......+++.|++.+|.+.+.-. .+..++.|+.||++.|.+..--...+ .++++|++..|.++.+.. .|..
T Consensus 117 -IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 117 -IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred -cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence 67666777889999999976554322 55668999999999997763222222 379999999999987654 7788
Q ss_pred CCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccCCCCCccEEe
Q 042875 179 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELF 257 (432)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 257 (432)
+.+|..|.++.|++...-+..|.++++|+.|++..|.+...-.-.|..+++|+.+.+..|.+..+.+ .|..+.++++|+
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 8899999999998877666778889999999999987665544578889999999999999986544 467788999999
Q ss_pred ecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCC
Q 042875 258 VSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM 336 (432)
Q Consensus 258 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (432)
++.|.....--.++.++..|+.|++++|.|. -.+..++.+++|+.|+++.|. +..++...+..++.|++|.++.|.+.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchH
Confidence 9999887777778889999999999999998 445778889999999999988 45566666778899999999999998
Q ss_pred CCch-hhhcCCCCCEEEeeCCCCc-cc---ChhccCCCCCCeeeccCCCCCcccC----CCCCCccEEeccCCCCccccC
Q 042875 337 EIPQ-EIAYLSSLKSLDLRGNNFE-SL---PASIKQLSRLCSLDLRRCNMLQSLP----ALPLCLKYLHLTGCNMLRSLP 407 (432)
Q Consensus 337 ~~~~-~~~~~~~L~~L~l~~n~l~-~l---~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~c~~l~~l~ 407 (432)
.+.. .+..+.+|++|+|+.|.++ .+ ...+..+++|+.|.+.+|+ ++.+| ..+..||.|++.+|+-.+.-+
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeecc
Confidence 8543 4677899999999999887 22 2455779999999999988 46666 345789999999976443222
Q ss_pred --CCCCccceecccc
Q 042875 408 --ELPLCLQELDATN 420 (432)
Q Consensus 408 --~~~~~L~~L~l~~ 420 (432)
+....|++|-+..
T Consensus 434 nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 434 NAFEPMELKELVMNS 448 (873)
T ss_pred cccccchhhhhhhcc
Confidence 2333566665543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=9.5e-31 Score=238.80 Aligned_cols=361 Identities=22% Similarity=0.255 Sum_probs=266.4
Q ss_pred eccCCcee-cccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceee
Q 042875 10 LDLSKIKC-INLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVEL 87 (432)
Q Consensus 10 l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L 87 (432)
+|+++|.- ++.-|.+...|++++.|.|...++. .+|+.++.+. +|++|.+++|.+.++.... .++.||.+
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-------~vPeEL~~lq-kLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-------QVPEELSRLQ-KLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-------hChHHHHHHh-hhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 56777763 3556677888888888888777776 6788888885 8888888888876665544 78888888
Q ss_pred eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCC----CCCccEE
Q 042875 88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQI----SGKITRL 162 (432)
Q Consensus 88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L 162 (432)
.+..|++.. .. ||..+.++..|..|++++|+.. +.| .+...+++-.|++++|.+. .+|.. +..|-.|
T Consensus 84 ~~R~N~LKn---sG---iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 84 IVRDNNLKN---SG---IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhcccccc---CC---CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 888888775 34 8888888888888998886654 444 5666778888888888655 34432 2345567
Q ss_pred EecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCc-ccchHhhhcCCCCCeeeecccccc
Q 042875 163 YLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL-ERFPEILEKMEHLKRINLDGTAIT 241 (432)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 241 (432)
++++|++..+|+.+..+.+|++|++++|.+...-...+.++.+|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+.
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 8888888888888888888888888888664332233445667777777775433 457788888888888888888888
Q ss_pred ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875 242 ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLG 321 (432)
Q Consensus 242 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (432)
.+|..+.++++|+.|.+++|.+.. +........+|++|+++.|.+..+|..+..+++|+.|.+.+|++.-....+.++.
T Consensus 236 ~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 888888888888888888876543 3333455678888888888888888888888888888887777544333333456
Q ss_pred CCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC
Q 042875 322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA 387 (432)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 387 (432)
+..|+++..++|.+.-+|..+..|+.|+.|.++.|++..+|+.|.-++.|+.|++..|+.+...|+
T Consensus 315 L~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 677777777777777778778888888888888888877888877788888888888777665553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=8.5e-31 Score=239.14 Aligned_cols=362 Identities=22% Similarity=0.307 Sum_probs=304.0
Q ss_pred cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccC
Q 042875 28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVP 106 (432)
Q Consensus 28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~ 106 (432)
+|-.|-.|+++|.+.| ..+|..+..+. +++.|.|....+..+|... .+.+|++|++++|++..+ -
T Consensus 6 LpFVrGvDfsgNDFsg-----~~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v--------h 71 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSG-----DRFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV--------H 71 (1255)
T ss_pred cceeecccccCCcCCC-----CcCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh--------h
Confidence 5678889999999986 28899999996 9999999999999999876 889999999999998763 3
Q ss_pred CcccCcccCceEeccCCccCCc-CC-CCCCCCCceEEEecCcccccccCCCCC---CccEEEeccccccccccc-ccCCC
Q 042875 107 SSIQNFKYLSALSFEGCKSLRS-FP-SNLHFVCPVTINFSYCVTLIEFPQISG---KITRLYLDQSAIEEVPSS-IECLT 180 (432)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~-~~~~~ 180 (432)
..++.++.|+.+.++.|+.... +| .+.++..|..|++++|... +.|..+. ++-.|++++|.+.++|.. +.+++
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 3478999999999999876543 66 7889999999999998654 6776554 567899999999999974 56888
Q ss_pred CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc--ccCcccCCCCCccEEee
Q 042875 181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT--ELPSSFENLPGLEELFV 258 (432)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l 258 (432)
.|-.|++++|+ .+.+|+.+..+..|+.|.+++|.+.-.--..+..+++|+.|.+++.+-+ .+|..+..+.+|..+++
T Consensus 151 DLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 99999999986 4667888999999999999998765443344556788888999987766 78888899999999999
Q ss_pred cCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-
Q 042875 259 SDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME- 337 (432)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 337 (432)
+.|+. ..+|..+..+++|+.|++++|.++.+....+.+.+++.|+++.|+ .+.+|.. ...+++|+.|.+.+|+++-
T Consensus 230 S~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a-vcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 230 SENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA-VCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cccCC-CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH-HhhhHHHHHHHhccCccccc
Confidence 98754 557888889999999999999999888888888999999999988 4556664 3478899999999997654
Q ss_pred -CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccccCC
Q 042875 338 -IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRSLPE 408 (432)
Q Consensus 338 -~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~ 408 (432)
+|..++.+..|+.+..++|.+.-+|+++..|..|+.|.|++|++++-... ..+.|+.||+.+|+++.--|.
T Consensus 307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 99999999999999999999999999999999999999999997654332 447899999999999876654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=3.7e-30 Score=223.10 Aligned_cols=389 Identities=22% Similarity=0.296 Sum_probs=276.0
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELN 88 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~ 88 (432)
+++.+|..... |.+++.+..++.++.++|++. .+|+.+...+ +++.++++.+.+..+++.+ .+..+..++
T Consensus 73 l~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-------~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 73 LNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-------ELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred EEeccchhhhC-CHHHHHHHHHHHhhcccchHh-------hccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhh
Confidence 45556644444 356666667777777777765 5677777775 7777777777776666655 777777777
Q ss_pred eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCC---CccEEEec
Q 042875 89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISG---KITRLYLD 165 (432)
Q Consensus 89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~ 165 (432)
-.+|+++. +|+.+.++.++..+++.++......+....++.|++|+...|-. ..+|..++ ++..|++.
T Consensus 144 ~~~N~i~s--------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 144 ATNNQISS--------LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLR 214 (565)
T ss_pred cccccccc--------CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhh
Confidence 77777765 67777888888888888876665555666688889998887644 46676555 45556788
Q ss_pred ccccccccccccCCCCCCEEeeccccccccccch-hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC
Q 042875 166 QSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP 244 (432)
Q Consensus 166 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (432)
.|++..+| .|+.|..|+++.++.|++ +.+|.. ...++++..|++..|.+ ...|..++.+++|++|++++|.++.+|
T Consensus 215 ~Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 215 RNKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred hcccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCccccCC
Confidence 88888888 788888999999888754 444544 45788999999998654 677888899999999999999999999
Q ss_pred cccCCCCCccEEeecCCCCCC-------------------------------------cccc----ccCCcccccccccc
Q 042875 245 SSFENLPGLEELFVSDCSKLD-------------------------------------KLPD----NIGNLESLRHISAA 283 (432)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~-------------------------------------~~~~----~~~~l~~L~~L~l~ 283 (432)
..++++ +|+.|-+.+|++.. +.+. ....+.+.+.|+++
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 999999 89999988876421 0000 11234566677777
Q ss_pred cccccccCccccCCCC---CcEEeccCCCCCC----------------------CCchhhhcCCCCccEEEeeccCCCCC
Q 042875 284 GSAISQLPSSVADSNA---LLILDFSRCKGLV----------------------SLPRSLLLGLSSLGLLYIMNCAVMEI 338 (432)
Q Consensus 284 ~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (432)
+-.++.+|..+..... ....+++.|+... .++....+.+++|..|++++|...++
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L 450 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL 450 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc
Confidence 7666666654433322 4555555554211 12223345678888889988888888
Q ss_pred chhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCCCccccCC---CCC
Q 042875 339 PQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNMLRSLPE---LPL 411 (432)
Q Consensus 339 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~---~~~ 411 (432)
|..++.+..|+.|+++.|++..+|.++.....++.+-.++|+ ++.++. .+..|..||+.+| .+..+|. .+.
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~Lgnmt 528 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMT 528 (565)
T ss_pred chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCC-chhhCChhhcccc
Confidence 888888888999999998888888877666666665555444 454542 3567889998884 5666776 677
Q ss_pred ccceecccccc
Q 042875 412 CLQELDATNCN 422 (432)
Q Consensus 412 ~L~~L~l~~c~ 422 (432)
+|++|++.+.|
T Consensus 529 nL~hLeL~gNp 539 (565)
T KOG0472|consen 529 NLRHLELDGNP 539 (565)
T ss_pred ceeEEEecCCc
Confidence 88899998843
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.9e-28 Score=212.47 Aligned_cols=318 Identities=21% Similarity=0.279 Sum_probs=171.9
Q ss_pred CCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcC
Q 042875 51 LPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSF 129 (432)
Q Consensus 51 ~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 129 (432)
+|.+++.+. ++..+++.++.++.+|... +++.|++||...|-++. +|+.++.+.+|+.|++..|+. ..+
T Consensus 152 lp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t--------lP~~lg~l~~L~~LyL~~Nki-~~l 221 (565)
T KOG0472|consen 152 LPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLET--------LPPELGGLESLELLYLRRNKI-RFL 221 (565)
T ss_pred CchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhc--------CChhhcchhhhHHHHhhhccc-ccC
Confidence 344444442 4444444444444333332 44455555555554432 666677777777777766433 345
Q ss_pred CCCCCCCCceEEEecCccccc---ccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCc
Q 042875 130 PSNLHFVCPVTINFSYCVTLI---EFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL 206 (432)
Q Consensus 130 ~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 206 (432)
|.+.+|..|+++.++.|.+.. +.-..+.++..|++.+|++.++|..+--+++|++||+++|.+ ..+|..++++ +|
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HL 299 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-ee
Confidence 566666666666665554331 111234455556666666666666555556666666666543 3344445555 55
Q ss_pred cEEEecCccCccc-------------------------------------ch----HhhhcCCCCCeeeeccccccccCc
Q 042875 207 VDLFVNGCLNLER-------------------------------------FP----EILEKMEHLKRINLDGTAITELPS 245 (432)
Q Consensus 207 ~~L~l~~~~~~~~-------------------------------------~~----~~l~~l~~L~~L~l~~~~~~~~~~ 245 (432)
+.|-+.||.+.+. .+ .....+.+.+.|+++.-+++.+|.
T Consensus 300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd 379 (565)
T KOG0472|consen 300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD 379 (565)
T ss_pred eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH
Confidence 5555555421100 00 000112234444444444444433
Q ss_pred ccCCCC---CccEEeecCC-----------------------CCCCccccccCCcccccccccccccccccCccccCCCC
Q 042875 246 SFENLP---GLEELFVSDC-----------------------SKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA 299 (432)
Q Consensus 246 ~~~~l~---~L~~L~l~~~-----------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (432)
.+..-- -.+..++++| +..+..|..+..+++|..|++++|-+..+|..++.+-.
T Consensus 380 EVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~ 459 (565)
T KOG0472|consen 380 EVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVR 459 (565)
T ss_pred HHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhh
Confidence 221111 1344444443 33444555566667777777777777777777777767
Q ss_pred CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccC
Q 042875 300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRR 378 (432)
Q Consensus 300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 378 (432)
|+.++++.|.+ ...|.. .-.+..++.+-.+++++..++.. +..+.+|..||+.+|.+..+|+.++++++|++|++++
T Consensus 460 Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 460 LQTLNLSFNRF-RMLPEC-LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred hheeccccccc-ccchHH-HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecC
Confidence 77777777642 233332 11334555555666777775555 6777777777777777777777777777777777777
Q ss_pred CCCC
Q 042875 379 CNML 382 (432)
Q Consensus 379 ~~~~ 382 (432)
|++.
T Consensus 538 Npfr 541 (565)
T KOG0472|consen 538 NPFR 541 (565)
T ss_pred CccC
Confidence 7754
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=5.5e-27 Score=223.13 Aligned_cols=390 Identities=22% Similarity=0.239 Sum_probs=249.6
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELN 88 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~ 88 (432)
+++..|-...-+....++.-+|+.||+++|++. .+|..+..++ +|+.|+++.|.+..+|... ++.+|+++.
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-------~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-------SFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLN 97 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccc-------cCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhhe
Confidence 444555444433445556666888999888887 6888888886 8888988888888888665 788888888
Q ss_pred eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceE-------------------EEecCcccc
Q 042875 89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVT-------------------INFSYCVTL 149 (432)
Q Consensus 89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~-------------------L~l~~~~~~ 149 (432)
|..|.++. +|..+..+.+|+.|++++|.+...-..+..+..++. +++..+...
T Consensus 98 L~~n~l~~--------lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 98 LKNNRLQS--------LPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLG 169 (1081)
T ss_pred eccchhhc--------CchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcc
Confidence 88888765 677778888888888888765432112333333333 333333333
Q ss_pred cccCCCCCCccE-EEecccccccccccccCCCC--------------------CCEEeeccccccccccchhcCCCCccE
Q 042875 150 IEFPQISGKITR-LYLDQSAIEEVPSSIECLTD--------------------LEVLDLRDCKRLKRISTRFCKLRSLVD 208 (432)
Q Consensus 150 ~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~~~--------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~ 208 (432)
+.++.....+++ +++.+|.+.. ..+.+++. ++.|+...|.+.... ......+|+.
T Consensus 170 ~~~~~~i~~l~~~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~ 245 (1081)
T KOG0618|consen 170 GSFLIDIYNLTHQLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQY 245 (1081)
T ss_pred cchhcchhhhheeeecccchhhh--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--ccccccccee
Confidence 344444444554 5555555541 12222233 333333333332111 1122456777
Q ss_pred EEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc
Q 042875 209 LFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288 (432)
Q Consensus 209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 288 (432)
++++.+.+ ..+|.+++.+.+|+.+++..|+++.+|..+...++|+.|.+..|... .+|....+..+|++|++..|.+.
T Consensus 246 ~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 246 LDISHNNL-SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred eecchhhh-hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence 77777544 34567777788888888888877777777777777777777776543 34555666778888888777776
Q ss_pred ccCcccc--------------------------CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-
Q 042875 289 QLPSSVA--------------------------DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE- 341 (432)
Q Consensus 289 ~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 341 (432)
.+|..+. .++.|+.|.+.+|.+.+.+... +.++.+|+.|++++|++.++|+.
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHH
Confidence 5544211 1223445555555544443332 44778888888888888887754
Q ss_pred hhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccc--cCC-CC-Cccce
Q 042875 342 IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRS--LPE-LP-LCLQE 415 (432)
Q Consensus 342 ~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~--l~~-~~-~~L~~ 415 (432)
+.+++.|+.|+++||+++.+|..+..++.|+.|...+|++ ...|+ ..+.|+.+|++.| .++. +++ .+ +.|+.
T Consensus 403 ~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l-~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL-LSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce-eechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccce
Confidence 5677888888888888888888888888888887776664 44443 3467888888774 3433 233 44 78888
Q ss_pred ecccccccc
Q 042875 416 LDATNCNRL 424 (432)
Q Consensus 416 L~l~~c~~l 424 (432)
||+++.+++
T Consensus 481 LdlSGN~~l 489 (1081)
T KOG0618|consen 481 LDLSGNTRL 489 (1081)
T ss_pred eeccCCccc
Confidence 888886643
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.6e-22 Score=212.44 Aligned_cols=315 Identities=27% Similarity=0.382 Sum_probs=218.6
Q ss_pred Cchhhcccc-cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccC
Q 042875 21 DPGAFTNMS-NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPW 98 (432)
Q Consensus 21 ~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~ 98 (432)
.|..|..+| +|+.|++.++.+. .+|..+. . .+|+.|++.++.+..++... .+++|+.|+++++...
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-------~lP~~f~-~-~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l--- 647 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-------CMPSNFR-P-ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL--- 647 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-------CCCCcCC-c-cCCcEEECcCccccccccccccCCCCCEEECCCCCCc---
Confidence 345565554 5888888887776 5666552 3 48888888888887776655 7788888888876421
Q ss_pred CCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC--CCCCccEEEeccccc-ccccc
Q 042875 99 EGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ--ISGKITRLYLDQSAI-EEVPS 174 (432)
Q Consensus 99 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~-~~~~~ 174 (432)
.. +| .++.+++|+.|++++|.....+| .+..+++|+.|++++|.....+|. .+.+|+.|++.++.. ..+|.
T Consensus 648 -~~---ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 648 -KE---IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred -Cc---CC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc
Confidence 11 44 36778888888888887777777 455678888888888877777775 346788888887643 33443
Q ss_pred cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc-------cchHhhhcCCCCCeeeeccccc-cccCcc
Q 042875 175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE-------RFPEILEKMEHLKRINLDGTAI-TELPSS 246 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~-~~~~~~ 246 (432)
. .++|+.|+++++.+ ..+|..+ .+++|+.|.+.++.... ..+......++|+.|++++|.. ..+|..
T Consensus 723 ~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 723 I---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred c---cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 2 35778888888764 3455433 46777777776543211 1111223356899999998754 478888
Q ss_pred cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCcc
Q 042875 247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLG 326 (432)
Q Consensus 247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 326 (432)
++++++|+.|++++|.....+|..+ . +++|+.|++++|.....++. ..++++
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~-----------------------L~sL~~L~Ls~c~~L~~~p~----~~~nL~ 849 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI-N-----------------------LESLESLDLSGCSRLRTFPD----ISTNIS 849 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------ccccCEEECCCCCccccccc----cccccC
Confidence 9999999999999987666555432 2 34455555555554444433 236788
Q ss_pred EEEeeccCCCCCchhhhcCCCCCEEEeeCC-CCcccChhccCCCCCCeeeccCCCCCccc
Q 042875 327 LLYIMNCAVMEIPQEIAYLSSLKSLDLRGN-NFESLPASIKQLSRLCSLDLRRCNMLQSL 385 (432)
Q Consensus 327 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~~~~~~~~ 385 (432)
.|+++++.+..+|..+..+++|+.|++++| .+..+|..+..+++|+.+++++|..+..+
T Consensus 850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 888888888888888888999999999885 66678888888899999999999766544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1e-25 Score=214.48 Aligned_cols=374 Identities=23% Similarity=0.289 Sum_probs=246.7
Q ss_pred eEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCce
Q 042875 7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLV 85 (432)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~ 85 (432)
-..+|+++|.+.... ..+..+++|+.|+++.|-|. ..|.....+- +|+++.|.++.++.+|..+ .+.+|+
T Consensus 47 L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~-------~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIR-------SVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred eEEeeccccccccCC-chhhhHHHHhhcccchhhHh-------hCchhhhhhh-cchhheeccchhhcCchhHHhhhccc
Confidence 346788999776664 78888999999999999887 5677777884 9999999999999999887 778899
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCC-------------------ccCCcCC-CCCCCCCceEEEecC
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGC-------------------KSLRSFP-SNLHFVCPVTINFSY 145 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~-~~~~~~~L~~L~l~~ 145 (432)
.|++++|.+.. +|..+..+..+..+..++| ...+.+. ....+.+ .|++.+
T Consensus 118 ~LdlS~N~f~~--------~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 118 YLDLSFNHFGP--------IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred ccccchhccCC--------CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 99999988764 3322333322222222222 1111111 1111111 244444
Q ss_pred cccccccCC--------------------CCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCC
Q 042875 146 CVTLIEFPQ--------------------ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRS 205 (432)
Q Consensus 146 ~~~~~~~~~--------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 205 (432)
|........ .-++++.|+..+|-+....... ...+|++++++.+.+.. +|+++..+.+
T Consensus 188 N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p-~p~nl~~~dis~n~l~~-lp~wi~~~~n 265 (1081)
T KOG0618|consen 188 NEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP-VPLNLQYLDISHNNLSN-LPEWIGACAN 265 (1081)
T ss_pred chhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc-ccccceeeecchhhhhc-chHHHHhccc
Confidence 433311111 1123333333333333221111 12355666666654333 3455556666
Q ss_pred ccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCC--------------------
Q 042875 206 LVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLD-------------------- 265 (432)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------- 265 (432)
|+.+....|.+ ..+|..+....+|+.+.+..|++..+|+.....+.|++|++..|.+..
T Consensus 266 le~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 266 LEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred ceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence 66666666544 445555555566666666666666666555556666666666554321
Q ss_pred ----cccc-ccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc
Q 042875 266 ----KLPD-NIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP 339 (432)
Q Consensus 266 ----~~~~-~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 339 (432)
..|. .-..++.|+.|.+.+|.++ ...+.+..+++|+.|++++|. ...+|...+..+..|++|+++||.++++|
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhh
Confidence 1110 1123567888999999998 566678889999999999997 55677777888999999999999999999
Q ss_pred hhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcc-cCC-CC-CCccEEeccCCCCcc
Q 042875 340 QEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQS-LPA-LP-LCLKYLHLTGCNMLR 404 (432)
Q Consensus 340 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~-~~-~~L~~L~l~~c~~l~ 404 (432)
..+..++.|++|-..+|++..+| .+..++.|+.+|++.|++... +++ .+ +.|++||+++|.++.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 99999999999999999999998 788999999999999987553 332 33 789999999998643
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.1e-18 Score=169.37 Aligned_cols=221 Identities=22% Similarity=0.202 Sum_probs=125.2
Q ss_pred CCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc
Q 042875 136 VCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL 215 (432)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (432)
++|++|++++|.+. .+|...++|+.|++.+|.+..+|... ..|+.|++++|.+. .+|. ..++|+.|++++|.
T Consensus 242 ~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~ 313 (788)
T PRK15387 242 PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQ 313 (788)
T ss_pred CCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCc
Confidence 44555555544333 33444445555555555555444321 34555555555433 2232 12456666666554
Q ss_pred CcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcccc
Q 042875 216 NLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVA 295 (432)
Q Consensus 216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 295 (432)
+.. +|.. ..+|+.|.+++|.++.+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+..+|...
T Consensus 314 L~~-Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~- 381 (788)
T PRK15387 314 LAS-LPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALP- 381 (788)
T ss_pred ccc-CCCC---cccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcccc-
Confidence 432 2221 12455566666666655531 2356666666665442 3331 245666666666666555432
Q ss_pred CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeee
Q 042875 296 DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLD 375 (432)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~ 375 (432)
.+|+.|++++|.+. .+|. .+++|+.|++++|.+..+|.. +.+|+.|++++|+++.+|..+..+++|+.++
T Consensus 382 --~~L~~LdLs~N~Lt-~LP~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 382 --SGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN 451 (788)
T ss_pred --cccceEEecCCccc-CCCC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEE
Confidence 45777777777643 3332 235678888888887777653 3467778888888888887777888888888
Q ss_pred ccCCCCCcccC
Q 042875 376 LRRCNMLQSLP 386 (432)
Q Consensus 376 l~~~~~~~~~~ 386 (432)
+++|++.+..+
T Consensus 452 Ls~N~Ls~~~~ 462 (788)
T PRK15387 452 LEGNPLSERTL 462 (788)
T ss_pred CCCCCCCchHH
Confidence 88887765544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.9e-18 Score=169.66 Aligned_cols=263 Identities=18% Similarity=0.237 Sum_probs=195.1
Q ss_pred hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceE
Q 042875 61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVT 140 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 140 (432)
+-..|+++.+.++.+|..+. .+|+.|++.+|+++. +|. ..++|+.|++++|.+. .+|.. .++|+.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~--------LP~---lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~ 266 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQLT-SLPVL--PPGLLE 266 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC--------CCC---CCCCCcEEEecCCccC-cccCc--ccccce
Confidence 45567888888888887553 478888888888775 342 2467888888887554 45532 467888
Q ss_pred EEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccc
Q 042875 141 INFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERF 220 (432)
Q Consensus 141 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 220 (432)
|++++|.+. .++....+|+.|++.+|++..+|.. .++|+.|++++|.+.+ +|.. ...|+.|++.+|.+. .+
T Consensus 267 L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 267 LSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred eeccCCchh-hhhhchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 888888654 5666667888899999888888763 4678999999987654 3432 345788888887654 34
Q ss_pred hHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCC
Q 042875 221 PEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNAL 300 (432)
Q Consensus 221 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 300 (432)
|.. ..+|++|++++|+++.+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+..+|.. .++|
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L 404 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSEL 404 (788)
T ss_pred ccc---ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCC
Confidence 432 24789999999999988753 356888889888665 35543 35789999999998877754 3679
Q ss_pred cEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhc
Q 042875 301 LILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASI 365 (432)
Q Consensus 301 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~ 365 (432)
+.|++++|.+. .+|. .+.+|+.|++++|+++.+|..+..+++|+.|++++|.++ ..+..+
T Consensus 405 ~~LdLS~N~Ls-sIP~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 405 KELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CEEEccCCcCC-CCCc----chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 99999999854 3553 245789999999999999999999999999999999998 444434
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=2.2e-19 Score=156.23 Aligned_cols=245 Identities=19% Similarity=0.188 Sum_probs=149.5
Q ss_pred eeEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceee-cCCCCCCCCCCCC--CCC
Q 042875 6 EGIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLH-WDTYPLRILPSNF--KPK 82 (432)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~-l~~~~~~~l~~~~--~~~ 82 (432)
+++.+++..|.+..+.+.+|..+++||.|||+.|+|+.| -|..+..++ ++-.|- +++|+++.+|... ++.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I------~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI------APDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhc------ChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHH
Confidence 467788899999999999999999999999999999863 355666676 554544 4557888887764 666
Q ss_pred CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCccccc-----------
Q 042875 83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLI----------- 150 (432)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~----------- 150 (432)
.|+.|.+.-|++.-+ ....+..++++..|.+.+|.+...-. .+..+..++.+.+..+.+..
T Consensus 141 slqrLllNan~i~Ci-------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 141 SLQRLLLNANHINCI-------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred HHHHHhcChhhhcch-------hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 666666666655422 12235555555555555543322111 22223333333333332110
Q ss_pred -ccCCCC-------------------------CCccEE----Eeccccccccc-ccccCCCCCCEEeeccccccccccch
Q 042875 151 -EFPQIS-------------------------GKITRL----YLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTR 199 (432)
Q Consensus 151 -~~~~~~-------------------------~~L~~L----~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 199 (432)
..+... ..++.+ ...++-....| ..|..+++|+.+++++|.+...-+.+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 000000 011111 11111112222 24677788888888888777776777
Q ss_pred hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEEeecCCCCC
Q 042875 200 FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKL 264 (432)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 264 (432)
|.....+++|++.+|.+...-...|..+..|+.|++++|+++ .-|.+|..+..|.+|.+-.|++.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 777888888888877665555556777788888888888887 34556677777888877777654
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=9.5e-18 Score=153.85 Aligned_cols=186 Identities=21% Similarity=0.208 Sum_probs=85.2
Q ss_pred ccccCCCCCCEEeeccccccccccchhcCC---CCccEEEecCccCccc----chHhhhcC-CCCCeeeecccccc----
Q 042875 174 SSIECLTDLEVLDLRDCKRLKRISTRFCKL---RSLVDLFVNGCLNLER----FPEILEKM-EHLKRINLDGTAIT---- 241 (432)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~---- 241 (432)
..+..+++|+.|++++|.+....+..+..+ ++|+.|++++|...+. +...+..+ ++|+++++++|.++
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 344445566666666655543333333222 2366666665544321 12233344 55556666555554
Q ss_pred -ccCcccCCCCCccEEeecCCCCCCc----cccccCCccccccccccccccc-----ccCccccCCCCCcEEeccCCCCC
Q 042875 242 -ELPSSFENLPGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAIS-----QLPSSVADSNALLILDFSRCKGL 311 (432)
Q Consensus 242 -~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 311 (432)
.+...+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+. .+...+..+++|++|++++|...
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2223344445566666655544421 1112223345555555555443 12223344455666666555533
Q ss_pred CCCchhhhcC----CCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc
Q 042875 312 VSLPRSLLLG----LSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 312 ~~~~~~~~~~----~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
+.....+... .+.|+.|++++|.++. +...+..+++|+.+++++|.++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 2111111111 2456666666665542 2333444455666666665555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=2.8e-16 Score=155.37 Aligned_cols=242 Identities=20% Similarity=0.304 Sum_probs=174.7
Q ss_pred CCceEEEecCcccccccCC-CCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCc
Q 042875 136 VCPVTINFSYCVTLIEFPQ-ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC 214 (432)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (432)
.+...|+++++.+. .+|. ....++.|++.+|.+..+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCC
Confidence 35677888876544 4565 33578899999999888887664 58899999988754 455444 347889999988
Q ss_pred cCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc
Q 042875 215 LNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV 294 (432)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 294 (432)
.+. .+|..+. .+|+.|++++|+++.+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|.+..+|..+
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL 323 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc
Confidence 765 5665553 478999999988887776543 578999999886653 454332 47888889888888766543
Q ss_pred cCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCee
Q 042875 295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSL 374 (432)
Q Consensus 295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L 374 (432)
.++|+.|++++|.+. .+|..+ +++|+.|++++|.+..+|..+ .++|+.|++++|.++.+|..+. ..|+.|
T Consensus 324 --~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~L 393 (754)
T PRK15370 324 --PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIM 393 (754)
T ss_pred --cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHH
Confidence 367888888888744 355432 368899999999888877655 3688999999998888887653 368888
Q ss_pred eccCCCCCcccCCC-------CCCccEEeccCCCC
Q 042875 375 DLRRCNMLQSLPAL-------PLCLKYLHLTGCNM 402 (432)
Q Consensus 375 ~l~~~~~~~~~~~~-------~~~L~~L~l~~c~~ 402 (432)
++++|++. .+|.. .+.+..+++.+|+.
T Consensus 394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 88888764 45531 25678888888763
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=8.1e-16 Score=152.14 Aligned_cols=245 Identities=20% Similarity=0.321 Sum_probs=169.8
Q ss_pred cCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCC-CCCCccEEEecccccccccccccCCCCCCEEeeccccc
Q 042875 114 YLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQ-ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKR 192 (432)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 192 (432)
+...|.++++.. ..+|... .+.++.|++++|.+. .+|. ...+|+.|++.+|.+..+|..+. ++|+.|++++|.+
T Consensus 179 ~~~~L~L~~~~L-tsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGL-TTIPACI-PEQITTLILDNNELK-SLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCc-CcCCccc-ccCCcEEEecCCCCC-cCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 456777777543 3455322 257888888888665 4443 34578888888888888877654 4788888888875
Q ss_pred cccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccC
Q 042875 193 LKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIG 272 (432)
Q Consensus 193 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 272 (432)
. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++.+|..+. ++|+.|++++|.+.. +|..+
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l- 323 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETL- 323 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCccc-
Confidence 4 4555443 47888888877654 4555433 478888888888887765432 468888888876653 44433
Q ss_pred CcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEE
Q 042875 273 NLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLD 352 (432)
Q Consensus 273 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 352 (432)
.++|+.|++++|.+..+|..+. ++|+.|++++|.+. .+|..+ .+.|+.|++++|.+..+|..+. .+|+.|+
T Consensus 324 -~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 324 -PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTNLPENLP--AALQIMQ 394 (754)
T ss_pred -cccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCCCCHhHH--HHHHHHh
Confidence 3678888888888877765543 68888888888743 455432 3578888888888888877654 4688888
Q ss_pred eeCCCCcccChhc----cCCCCCCeeeccCCCCC
Q 042875 353 LRGNNFESLPASI----KQLSRLCSLDLRRCNML 382 (432)
Q Consensus 353 l~~n~l~~l~~~~----~~l~~L~~L~l~~~~~~ 382 (432)
+++|+++.+|..+ ..++.+..+++.+|++.
T Consensus 395 Ls~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8888888776544 34477788888888864
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-17 Score=145.85 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=86.1
Q ss_pred chhhhcceeecCCCCCCCCCCCC--CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CC
Q 042875 57 YLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SN 132 (432)
Q Consensus 57 ~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 132 (432)
.+|..-.+++|..|.++.+|... .+++||+|||++|+|+.+ .|..|..++++..|.+.++..+..+| .+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-------APDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-------ChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 34456777888888888888775 778888888888888865 45568888888888777766666666 45
Q ss_pred CCCCCceEEEecCccccc---ccCCCCCCccEEEecccccccccc-cccCCCCCCEEeecccc
Q 042875 133 LHFVCPVTINFSYCVTLI---EFPQISGKITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCK 191 (432)
Q Consensus 133 ~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 191 (432)
.++..++.|.+.-|...- +.-..++++..|.+.+|.+..+++ .+..+..++.+.+..+.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 556777777666554331 222344556666666676666665 55566666666665554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.60 E-value=4.7e-16 Score=142.60 Aligned_cols=210 Identities=20% Similarity=0.209 Sum_probs=105.1
Q ss_pred ccccccCCCCCCEEeecccccc------ccccchhcCCCCccEEEecCccCcccchHhhhcCCC---CCeeeecccccc-
Q 042875 172 VPSSIECLTDLEVLDLRDCKRL------KRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEH---LKRINLDGTAIT- 241 (432)
Q Consensus 172 ~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~- 241 (432)
++..+...+.++.++++++... ..++..+..+++|+.|++++|.+....+..+..+.. |++|+++++.++
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 4445556666777777766543 123344556777888888777665544444444433 777777777665
Q ss_pred ----ccCcccCCC-CCccEEeecCCCCCCc----cccccCCccccccccccccccc-----ccCccccCCCCCcEEeccC
Q 042875 242 ----ELPSSFENL-PGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAIS-----QLPSSVADSNALLILDFSR 307 (432)
Q Consensus 242 ----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~ 307 (432)
.+...+..+ ++|+.|++++|.+.+. +...+..+++|++|++++|.+. .++..+...++|++|++++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 122334445 6677777777765532 2223344455666666665554 1222233334555555555
Q ss_pred CCCCCCCch---hhhcCCCCccEEEeeccCCCC-Cchhh-hc----CCCCCEEEeeCCCCc-----ccChhccCCCCCCe
Q 042875 308 CKGLVSLPR---SLLLGLSSLGLLYIMNCAVME-IPQEI-AY----LSSLKSLDLRGNNFE-----SLPASIKQLSRLCS 373 (432)
Q Consensus 308 ~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~-~~~~~-~~----~~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~ 373 (432)
|.+.+.... ..+..+++|+.|++++|.++. ....+ .. .+.|+.|++++|.++ .+...+..+++|++
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 543321111 112234455555555555443 11111 11 245555555555443 12233334445555
Q ss_pred eeccCCCC
Q 042875 374 LDLRRCNM 381 (432)
Q Consensus 374 L~l~~~~~ 381 (432)
+++++|.+
T Consensus 283 l~l~~N~l 290 (319)
T cd00116 283 LDLRGNKF 290 (319)
T ss_pred EECCCCCC
Confidence 55555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2e-16 Score=122.48 Aligned_cols=167 Identities=26% Similarity=0.403 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccc
Q 042875 73 RILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIE 151 (432)
Q Consensus 73 ~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 151 (432)
..++..+.+.+.+.|.+++|+++. +|+.+..+.+|++|++.+|+.. ++| .+..+++|+.|+++.|+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~--------vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnr---- 90 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTV--------VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNR---- 90 (264)
T ss_pred hhcccccchhhhhhhhcccCceee--------cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhh----
Confidence 355666777778888888888764 6777788888888887775432 233 34445555555444332
Q ss_pred cCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccc-cccchhcCCCCccEEEecCccCcccchHhhhcCCCC
Q 042875 152 FPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLK-RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHL 230 (432)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 230 (432)
+..+|..|+.+|.|+.|++.+|.+.+ .+|..|..+ ..|
T Consensus 91 -----------------l~~lprgfgs~p~levldltynnl~e~~lpgnff~m------------------------~tl 129 (264)
T KOG0617|consen 91 -----------------LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM------------------------TTL 129 (264)
T ss_pred -----------------hhcCccccCCCchhhhhhccccccccccCCcchhHH------------------------HHH
Confidence 23445666666666666666665543 234444444 444
Q ss_pred CeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc
Q 042875 231 KRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV 294 (432)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 294 (432)
+.|.++.|.+..+|+.++++++|+.|.+++|... .+|..++.+..|++|.+.+|++.-+|+.+
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 4445555555555555555555555555555433 24555555556666666666555555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.2e-16 Score=123.68 Aligned_cols=154 Identities=27% Similarity=0.458 Sum_probs=98.3
Q ss_pred CCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEecc
Q 042875 227 MEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFS 306 (432)
Q Consensus 227 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 306 (432)
+.++..|.+++|+++.+|+.+..+.+|+.|.+.+|. ...+|..++.++.|+.|+++-|++..+|..+++++.|+.||+.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 344445555555555555555555555555555543 2344555555666666666666666666666666666666666
Q ss_pred CCCCCCC-CchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875 307 RCKGLVS-LPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~ 382 (432)
.|..... +|.. |..++.|+-|+++.|.+.-+|..++.+++|+.|.+.+|.+..+|..++.++.|++|.+.+|++.
T Consensus 111 ynnl~e~~lpgn-ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 111 YNNLNENSLPGN-FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccCCcc-hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 6654432 3333 3356777777777777777777777788888888888877777877777888888888877743
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=8.3e-14 Score=120.13 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCCCeeeecccccccc-----CcccCCCCCccEEeecCCCCCCc----cccccCCccccccccccccccc-----ccCcc
Q 042875 228 EHLKRINLDGTAITEL-----PSSFENLPGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAIS-----QLPSS 293 (432)
Q Consensus 228 ~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~~~~~ 293 (432)
+.|+.+..++|++... ...+...+.|+.+.+..|.+... +...+.++++|+.|++.+|.++ .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4455555555554421 12234445555555555443211 1123344555555555555543 22333
Q ss_pred ccCCCCCcEEeccCCCCCCCCchhh----hcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCC
Q 042875 294 VADSNALLILDFSRCKGLVSLPRSL----LLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNF 358 (432)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l 358 (432)
+..+++|+.+.+++|...+.-...+ -...+.|+++.+.+|.|+. +...+...|.|+.|++++|++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4444555555555554333322211 1234556666666665554 333344455566666666655
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=3.2e-11 Score=121.79 Aligned_cols=101 Identities=23% Similarity=0.253 Sum_probs=59.2
Q ss_pred cCceEeccCCcc-CCcCCC--CCCCCCceEEEecCcccccccCCCCC---CccEEEecccccccccccccCCCCCCEEee
Q 042875 114 YLSALSFEGCKS-LRSFPS--NLHFVCPVTINFSYCVTLIEFPQISG---KITRLYLDQSAIEEVPSSIECLTDLEVLDL 187 (432)
Q Consensus 114 ~L~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 187 (432)
+|++|-+.++.. ...++. +..+|.|+.|++++|.....+|..++ +|+.|+++++.+..+|..++++..|.+|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 455555555432 223332 44466666666666655555554333 445555555566677777777777777777
Q ss_pred ccccccccccchhcCCCCccEEEecCc
Q 042875 188 RDCKRLKRISTRFCKLRSLVDLFVNGC 214 (432)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (432)
..+.....++.....+.+|++|.+...
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccchhhhcccccEEEeecc
Confidence 776555445554555777777776653
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.2e-11 Score=124.87 Aligned_cols=249 Identities=24% Similarity=0.329 Sum_probs=167.8
Q ss_pred CCCCccEEEecccccccccccccCCCCCCEEeecccc--ccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCe
Q 042875 155 ISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCK--RLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKR 232 (432)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 232 (432)
.+...+.+.+-++.+..++.... ++.|++|-+.++. ........|..++.|+.|++++|...+.+|..++.+-+|++
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34567888888888877766554 4579999998876 33344455788999999999999888999999999999999
Q ss_pred eeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc---ccCCCCCcEEeccCCC
Q 042875 233 INLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS---VADSNALLILDFSRCK 309 (432)
Q Consensus 233 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~ 309 (432)
|+++++.+..+|..++++..|.+|++..+.....++.....+.+|++|.+........... +..+.+|+.+......
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 9999999999999999999999999999877666666666799999999877653322222 3344444444443222
Q ss_pred CCCCCchhhhcCCCCcc----EEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccCh-hc-----cC-CCCCCeeeccC
Q 042875 310 GLVSLPRSLLLGLSSLG----LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA-SI-----KQ-LSRLCSLDLRR 378 (432)
Q Consensus 310 ~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~-----~~-l~~L~~L~l~~ 378 (432)
. .+... +..+..|. .+.+.++.....+..+..+.+|+.|.+.+|.+.+... .. .. ++++..+.+.+
T Consensus 680 ~--~~~e~-l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 V--LLLED-LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred h--HhHhh-hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 1 00011 11222222 3333334444466667788888888888887763321 10 11 33455555555
Q ss_pred CCCCcccC--CCCCCccEEeccCCCCccccC
Q 042875 379 CNMLQSLP--ALPLCLKYLHLTGCNMLRSLP 407 (432)
Q Consensus 379 ~~~~~~~~--~~~~~L~~L~l~~c~~l~~l~ 407 (432)
|.....+. -.+++|+.|.+..|..+..+.
T Consensus 757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccccchhhccCcccEEEEecccccccCC
Confidence 55444433 245678888888887766544
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.5e-12 Score=112.65 Aligned_cols=213 Identities=17% Similarity=0.160 Sum_probs=133.9
Q ss_pred ccccccccCCCCCCEEeecccccccccc--chhcCCCCccEEEecCccCccc--chHhhhcCCCCCeeeeccccccccC-
Q 042875 170 EEVPSSIECLTDLEVLDLRDCKRLKRIS--TRFCKLRSLVDLFVNGCLNLER--FPEILEKMEHLKRINLDGTAITELP- 244 (432)
Q Consensus 170 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~- 244 (432)
+.+...=.++.+|+...+.++... ..+ .....+++++.|++++|-+... +-.....+++|+.|+++.|++...-
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred HHHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 333333345566777777765432 212 3455677777777777533322 2233456778888888887776221
Q ss_pred -cccCCCCCccEEeecCCCCCCc-cccccCCccccccccccccc-ccccCccccCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875 245 -SSFENLPGLEELFVSDCSKLDK-LPDNIGNLESLRHISAAGSA-ISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLG 321 (432)
Q Consensus 245 -~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (432)
.....+++++.|.+++|.+... +......+|+|+.|++.+|. +..-.....-++.|+.|+|++|.+.+.-.......
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 1223567788888888876532 22223457888888888884 32222333445678888888888766554444567
Q ss_pred CCCccEEEeeccCCCC--Cchh-----hhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCc
Q 042875 322 LSSLGLLYIMNCAVME--IPQE-----IAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 322 ~~~L~~L~l~~~~~~~--~~~~-----~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~ 383 (432)
++.|..|+++.|++.+ .|.. ...+++|++|++..|++.+++ ..+..+++|+.+.+..+.+.+
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 8888888888888887 4443 356788888988888887554 345566777777777766533
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=2e-11 Score=105.61 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=110.2
Q ss_pred cCCCCCccEEeecCCCCCCcccc----ccCCcccccccccccccccc--------------cCccccCCCCCcEEeccCC
Q 042875 247 FENLPGLEELFVSDCSKLDKLPD----NIGNLESLRHISAAGSAISQ--------------LPSSVADSNALLILDFSRC 308 (432)
Q Consensus 247 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~--------------~~~~~~~~~~L~~L~l~~~ 308 (432)
+..+++|+++++++|-+-...++ -+.++..|++|.+.+|.+.. ......+-++|+++..+.|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33444555555555443322221 12334555555555555431 1123445578888888888
Q ss_pred CCCCCCc---hhhhcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc-----ccChhccCCCCCCeee
Q 042875 309 KGLVSLP---RSLLLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE-----SLPASIKQLSRLCSLD 375 (432)
Q Consensus 309 ~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~L~ 375 (432)
++-..-. ...+...+.|+.+.++.|.|.. +...+..|++|+.|+|.+|-++ .+...+..+++|++++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 7443322 2234456789999999998876 4456788999999999999777 3445667788899999
Q ss_pred ccCCCCCccc--------CCCCCCccEEeccCCCCccc----c--C-CCCCccceecccccc
Q 042875 376 LRRCNMLQSL--------PALPLCLKYLHLTGCNMLRS----L--P-ELPLCLQELDATNCN 422 (432)
Q Consensus 376 l~~~~~~~~~--------~~~~~~L~~L~l~~c~~l~~----l--~-~~~~~L~~L~l~~c~ 422 (432)
+++|.+.+.- -...++|+++.+.+|.--.. + + ...+.|+.|++++|.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 9999875432 23467899999988742111 0 1 146778899998863
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.6e-11 Score=107.02 Aligned_cols=203 Identities=20% Similarity=0.183 Sum_probs=102.2
Q ss_pred hcceeecCCCCCCCCCC--CC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC--CCCC
Q 042875 61 KLRYLHWDTYPLRILPS--NF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--NLHF 135 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~ 135 (432)
+|+.+.|.++.+...+. .. .|++++.|||++|-+.... . +......+++|+.|+++.|.+..-... ...+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~--~---v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF--P---VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH--H---HHHHHHhcccchhcccccccccCCccccchhhh
Confidence 66777777776665553 22 6777777777777655321 1 223345667777777776655432221 1235
Q ss_pred CCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc
Q 042875 136 VCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL 215 (432)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 215 (432)
++|+.|.++.|.+.. ..+-.....+|+|+.|++..|...............|++|++++|.
T Consensus 197 ~~lK~L~l~~CGls~-------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhheEEeccCCCCH-------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 555666666655442 2222334445666666666653222222223334556666666655
Q ss_pred Ccccc-hHhhhcCCCCCeeeecccccc--ccCcc-----cCCCCCccEEeecCCCCCCc-cccccCCccccccccccccc
Q 042875 216 NLERF-PEILEKMEHLKRINLDGTAIT--ELPSS-----FENLPGLEELFVSDCSKLDK-LPDNIGNLESLRHISAAGSA 286 (432)
Q Consensus 216 ~~~~~-~~~l~~l~~L~~L~l~~~~~~--~~~~~-----~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 286 (432)
+.... ......++.|+.|+++.+.++ .+|+. ...+++|+.|.+..|++... ....+..+++|+.+.+..+.
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 44321 133445566666666666555 22322 34555666666666654221 01122334455555544444
Q ss_pred c
Q 042875 287 I 287 (432)
Q Consensus 287 ~ 287 (432)
+
T Consensus 338 l 338 (505)
T KOG3207|consen 338 L 338 (505)
T ss_pred c
Confidence 3
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=8.9e-10 Score=89.30 Aligned_cols=123 Identities=25% Similarity=0.257 Sum_probs=43.1
Q ss_pred cccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhh-hcCCCCCEEE
Q 042875 274 LESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEI-AYLSSLKSLD 352 (432)
Q Consensus 274 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~ 352 (432)
+..+++|++.++.|..+...-..+.+|+.|++++|.... +. .+..+++|++|++++|.++.+...+ ..+|+|++|.
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCcc-cc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 345666666666666543221245667777777776432 22 1335678888888888888875544 4678888888
Q ss_pred eeCCCCcccC--hhccCCCCCCeeeccCCCCCcccC------CCCCCccEEeccC
Q 042875 353 LRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQSLP------ALPLCLKYLHLTG 399 (432)
Q Consensus 353 l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~ 399 (432)
+++|+|..+. ..++.+++|+.|++.+|+....-. ..+++|+.||-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8888777332 456678888888888888654321 1346777776544
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=4.2e-10 Score=95.65 Aligned_cols=127 Identities=26% Similarity=0.298 Sum_probs=96.1
Q ss_pred cCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCE
Q 042875 271 IGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKS 350 (432)
Q Consensus 271 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 350 (432)
+.....|+++++++|.|..+..++.-.|.++.|+++.|.....-. .+.+++|+.|++++|.++.+..+-..+-++++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 344577888999999888888888888899999998887544333 33678899999999988887666667778889
Q ss_pred EEeeCCCCcccChhccCCCCCCeeeccCCCCCc--ccC--CCCCCccEEeccCCC
Q 042875 351 LDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ--SLP--ALPLCLKYLHLTGCN 401 (432)
Q Consensus 351 L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~--~~~--~~~~~L~~L~l~~c~ 401 (432)
|.+++|.+..+ .++.++-+|..|++++|++-. ..- ...++|+.+.+.+|+
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 99999888766 467788888899999887522 111 234578888888876
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=1.6e-09 Score=102.27 Aligned_cols=175 Identities=30% Similarity=0.440 Sum_probs=87.7
Q ss_pred CCccEEEecCccCcccchHhhhcCC-CCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccc
Q 042875 204 RSLVDLFVNGCLNLERFPEILEKME-HLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA 282 (432)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 282 (432)
..++.+.+.++.. ..++....... +|+.+++++|++..++..+..+++|+.|++++|++.. ++...+..+.|+.+++
T Consensus 116 ~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheec
Confidence 4455555554332 23333333332 5555555555555554445555555555555554332 2222224455555555
Q ss_pred ccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccC
Q 042875 283 AGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLP 362 (432)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 362 (432)
++|.+..+|........|+.+.+++|........ ...+..+..+.+.++++..++..++.+++++.|++++|.++.++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 5555555555444444455555555531111111 22344455555555555554555555566666666666666555
Q ss_pred hhccCCCCCCeeeccCCCCCc
Q 042875 363 ASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 363 ~~~~~l~~L~~L~l~~~~~~~ 383 (432)
. ++...++++++++++.+..
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred c-ccccCccCEEeccCccccc
Confidence 4 5556666666666655443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=2e-10 Score=105.65 Aligned_cols=194 Identities=27% Similarity=0.400 Sum_probs=153.6
Q ss_pred CCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeec
Q 042875 180 TDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVS 259 (432)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 259 (432)
..-...+++.|++. .+|..+..+-.|+.+.++.|.+ ..+|..++.+..|.+++++.|+++.+|..+..++ |+.|-++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 33445567776643 4565566677788888877544 4577888999999999999999999998888877 8888888
Q ss_pred CCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc
Q 042875 260 DCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP 339 (432)
Q Consensus 260 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 339 (432)
+|+ ...+|..++..+.|..++.+.|.+..+|..++.+.+|+.|.+..|.+. ++|.+.. .+ .|..||++.|++..+|
T Consensus 152 NNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~L-pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 152 NNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SL-PLIRLDFSCNKISYLP 227 (722)
T ss_pred cCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CC-ceeeeecccCceeecc
Confidence 875 456788888899999999999999999999999999999999998744 4555443 33 4899999999999999
Q ss_pred hhhhcCCCCCEEEeeCCCCcccChhc---cCCCCCCeeeccCCC
Q 042875 340 QEIAYLSSLKSLDLRGNNFESLPASI---KQLSRLCSLDLRRCN 380 (432)
Q Consensus 340 ~~~~~~~~L~~L~l~~n~l~~l~~~~---~~l~~L~~L~l~~~~ 380 (432)
..+..|..|++|-|.+|.++.-|..+ ++.+--++|+..-|+
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999999999998666544 344555777777774
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.4e-09 Score=102.79 Aligned_cols=192 Identities=22% Similarity=0.335 Sum_probs=136.9
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccch-hhhcceeecCCCCCCCCC-CCCCCCCceee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYL-PEKLRYLHWDTYPLRILP-SNFKPKNLVEL 87 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l-~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L 87 (432)
++...+.. ..+...+..++.++.|++.++.+. .++...... + +|+.|+++++.+..++ ....+++|+.|
T Consensus 98 l~~~~~~~-~~~~~~~~~~~~l~~L~l~~n~i~-------~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L 168 (394)
T COG4886 98 LDLNLNRL-RSNISELLELTNLTSLDLDNNNIT-------DIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNL 168 (394)
T ss_pred eecccccc-ccCchhhhcccceeEEecCCcccc-------cCccccccchh-hcccccccccchhhhhhhhhcccccccc
Confidence 44444432 223356666788999999999988 456555544 2 8999999999998886 44588999999
Q ss_pred eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCC-CCCCceEEEecCcccccccC--CCCCCccEEEe
Q 042875 88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNL-HFVCPVTINFSYCVTLIEFP--QISGKITRLYL 164 (432)
Q Consensus 88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l 164 (432)
++++|.+++ ++...+..+.|+.|++++|.. ..+|... ....|+++.+++|....... ....++..+.+
T Consensus 169 ~l~~N~l~~--------l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 169 DLSFNDLSD--------LPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLEL 239 (394)
T ss_pred ccCCchhhh--------hhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhccccccccc
Confidence 999999876 444445888999999998654 4556543 45558999998885332222 23445666667
Q ss_pred cccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccch
Q 042875 165 DQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP 221 (432)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 221 (432)
.++.+...+..++.++.++.|++++|..... +. +....+++.|+++++......+
T Consensus 240 ~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 240 SNNKLEDLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred CCceeeeccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 7777777778888888899999999875543 33 7778899999999876655444
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.6e-09 Score=87.81 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=10.8
Q ss_pred hcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCcc
Q 042875 61 KLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKS 125 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (432)
.+++|+|+++.++.+.... .+.+|+.|++++|.++.+ +.+..+++|+.|++++|..
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l---------~~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL---------EGLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S-----------TT----TT--EEE--SS--
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc---------cCccChhhhhhcccCCCCC
Confidence 4566666666665555443 455666666666665542 1234455555555555443
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.88 E-value=8.7e-11 Score=104.05 Aligned_cols=277 Identities=18% Similarity=0.173 Sum_probs=138.6
Q ss_pred cchhhhcceeecCCCCCCCCCCC---C-CCCCceeeeecccc-ccccCCCcccccCCcccCcccCceEeccCCccCCcCC
Q 042875 56 EYLPEKLRYLHWDTYPLRILPSN---F-KPKNLVELNLRFSK-VEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP 130 (432)
Q Consensus 56 ~~l~~~L~~L~l~~~~~~~l~~~---~-~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 130 (432)
.++-..|+.|.++++.-...... . +++++++|++.++. +++ .. .-..=..+++|+++++..|..++...
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd---~s---~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD---SS---LLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH---HH---HHHHHHhcchhhhhhhcccchhHHHH
Confidence 33334688888888843222222 2 88888888888775 221 11 11112367888888888877665432
Q ss_pred ---CCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeecccccccc--ccchhcCCCC
Q 042875 131 ---SNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKR--ISTRFCKLRS 205 (432)
Q Consensus 131 ---~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~ 205 (432)
-...|++|++|++++|..... + .+..-..++..++.+...+|...+. +...-..+..
T Consensus 208 Lk~la~gC~kL~~lNlSwc~qi~~---------------~---gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~ 269 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWCPQISG---------------N---GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE 269 (483)
T ss_pred HHHHHHhhhhHHHhhhccCchhhc---------------C---cchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence 244589999999999875532 1 1111222333445554555533221 1111123444
Q ss_pred ccEEEecCccCcccch--HhhhcCCCCCeeeeccc-ccccc--CcccCCCCCccEEeecCCCCCCcccc-c-cCCccccc
Q 042875 206 LVDLFVNGCLNLERFP--EILEKMEHLKRINLDGT-AITEL--PSSFENLPGLEELFVSDCSKLDKLPD-N-IGNLESLR 278 (432)
Q Consensus 206 L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~-~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~-~-~~~l~~L~ 278 (432)
+.++++..|....+.. ..-..+..|+.+..++. .+++. -..-..+.+|+.+.+..|...++... . -.++++|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 5555555554443322 11224556666666552 33311 11123456777777777764332211 1 13456677
Q ss_pred cccccccccc---ccCccccCCCCCcEEeccCCCCCCCCchhhh----cCCCCccEEEeeccCCCC--CchhhhcCCCCC
Q 042875 279 HISAAGSAIS---QLPSSVADSNALLILDFSRCKGLVSLPRSLL----LGLSSLGLLYIMNCAVME--IPQEIAYLSSLK 349 (432)
Q Consensus 279 ~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~ 349 (432)
.+++..+... .+.....+++.++++.++.|..+++.....+ .+...++.+.+++|..++ ....+..+++|+
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 7776665433 2334445566666666666654444322111 123344444444444333 222334444444
Q ss_pred EEEeeCC
Q 042875 350 SLDLRGN 356 (432)
Q Consensus 350 ~L~l~~n 356 (432)
.+++-++
T Consensus 430 ri~l~~~ 436 (483)
T KOG4341|consen 430 RIELIDC 436 (483)
T ss_pred eeeeech
Confidence 4444443
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.2e-11 Score=100.90 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=125.8
Q ss_pred CCCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccc-ccc--ccCccccCCCCCcE
Q 042875 228 EHLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AIS--QLPSSVADSNALLI 302 (432)
Q Consensus 228 ~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~ 302 (432)
+.+|++++++..++ .+-..+..|.+|+.|.+.++...+.+...++.-.+|+.++++.+ +++ ...-.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35888888887777 44455677889999999998888877777888888999998876 454 34445788899999
Q ss_pred EeccCCCCCCCCchhhhc-CCCCccEEEeeccCCC----CCchhhhcCCCCCEEEeeCC-CCc-ccChhccCCCCCCeee
Q 042875 303 LDFSRCKGLVSLPRSLLL-GLSSLGLLYIMNCAVM----EIPQEIAYLSSLKSLDLRGN-NFE-SLPASIKQLSRLCSLD 375 (432)
Q Consensus 303 L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~n-~l~-~l~~~~~~l~~L~~L~ 375 (432)
|++++|....+.-..... --.+|+.|+++|+.-. .+......||+|..||+++| .++ .....+-+++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999998765543222222 2367899999987422 24444578999999999987 344 4445667899999999
Q ss_pred ccCCCCCccc---C-CCCCCccEEeccCCC
Q 042875 376 LRRCNMLQSL---P-ALPLCLKYLHLTGCN 401 (432)
Q Consensus 376 l~~~~~~~~~---~-~~~~~L~~L~l~~c~ 401 (432)
+++|-.+..- . ...++|.+|++.+|-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9998753211 0 234689999998874
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=2.3e-10 Score=101.42 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=161.5
Q ss_pred cccCCCCCCEEeecccccccc--ccchhcCCCCccEEEecCccCcccc--hHhhhcCCCCCeeeeccc-ccc--ccCccc
Q 042875 175 SIECLTDLEVLDLRDCKRLKR--ISTRFCKLRSLVDLFVNGCLNLERF--PEILEKMEHLKRINLDGT-AIT--ELPSSF 247 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~-~~~--~~~~~~ 247 (432)
...+++++++|.+.+|...+. ....-..|+.|+.+.+..|...++. ......+++|++++++.+ +++ .+....
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 445677888888888765442 1122345778888888776554432 122345778888887763 333 233334
Q ss_pred CCCCCccEEeecCCCCCCc--cccccCCcccccccccccccc-c--ccCccccCCCCCcEEeccCCCCCCCCchh-hhcC
Q 042875 248 ENLPGLEELFVSDCSKLDK--LPDNIGNLESLRHISAAGSAI-S--QLPSSVADSNALLILDFSRCKGLVSLPRS-LLLG 321 (432)
Q Consensus 248 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 321 (432)
..+..++.+...+|...+. +-..-..++.+.++++..+.. + .+......+..|++++.+++...++.+.+ ...+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 4555566666666643321 111113455566666555532 2 22233445678899999888766655543 3446
Q ss_pred CCCccEEEeeccC-CCC--CchhhhcCCCCCEEEeeCCCCc---ccChhccCCCCCCeeeccCCCCCcccC--------C
Q 042875 322 LSSLGLLYIMNCA-VME--IPQEIAYLSSLKSLDLRGNNFE---SLPASIKQLSRLCSLDLRRCNMLQSLP--------A 387 (432)
Q Consensus 322 ~~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~n~l~---~l~~~~~~l~~L~~L~l~~~~~~~~~~--------~ 387 (432)
.++|+.+.+++|+ ++. +...-.+++.|+.+++.++... .+...-.+++.|+.+.+++|..++.-. .
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 7899999999986 333 2223357889999999998544 344445689999999999998766541 3
Q ss_pred CCCCccEEeccCCCCccccCC----CCCccceecccccccccc
Q 042875 388 LPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRLQS 426 (432)
Q Consensus 388 ~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~ 426 (432)
....|+.+.+.+|+.++...- .++.|+++++.+|.+++.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 446799999999998875432 577899999999988843
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.5e-09 Score=92.25 Aligned_cols=129 Identities=22% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875 250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY 329 (432)
Q Consensus 250 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (432)
+..|+++++++|.+. .+.+...-.|.++.|++++|.+..+.. +..+++|+.||+++|.+.. +..+ -..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gw-h~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGW-HLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhh-HhhhcCEeeee
Confidence 345666666665332 233334445666777777776664433 5566777777777766332 2211 12567788888
Q ss_pred eeccCCCCCchhhhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCc
Q 042875 330 IMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 330 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~ 383 (432)
+++|.+.++. .++.+-+|..||+++|+|..+. ..+++++-|+.+.+.+|++..
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8888777653 3667778889999999888443 567888888888888888644
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.9e-10 Score=94.62 Aligned_cols=176 Identities=22% Similarity=0.213 Sum_probs=110.6
Q ss_pred CCCEEeeccccccc-cccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc-cccc--ccCcccCCCCCccEE
Q 042875 181 DLEVLDLRDCKRLK-RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG-TAIT--ELPSSFENLPGLEEL 256 (432)
Q Consensus 181 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~--~~~~~~~~l~~L~~L 256 (432)
.++++|+++..+.. .+...+..|.+|+.|.+.+..+.+.+-..+....+|+.+++++ +.++ ...-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46667776654432 2334455677777777777666666666666777777777776 3444 222345677777777
Q ss_pred eecCCCCCCccccc-cCC-ccccccccccccccc----ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEe
Q 042875 257 FVSDCSKLDKLPDN-IGN-LESLRHISAAGSAIS----QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI 330 (432)
Q Consensus 257 ~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 330 (432)
.++-|......... +.+ -+.|+.|+++|+.-. .+..-...++++.+||+++|.....-....+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777554332111 111 267777888776322 333345678888888888887655544444557788888888
Q ss_pred eccCCCC--CchhhhcCCCCCEEEeeCC
Q 042875 331 MNCAVME--IPQEIAYLSSLKSLDLRGN 356 (432)
Q Consensus 331 ~~~~~~~--~~~~~~~~~~L~~L~l~~n 356 (432)
+.|.... ....+...|+|.+|++.|+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8886443 3334567788888888887
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=2.2e-09 Score=98.96 Aligned_cols=170 Identities=19% Similarity=0.207 Sum_probs=120.4
Q ss_pred eEeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCcee
Q 042875 7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVE 86 (432)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~ 86 (432)
+.+.|++.|+...+. ..+..+--|+.+.++.|.+. .+|..+..+. .|.+++++.|.+..+|.....--|+.
T Consensus 77 t~~aDlsrNR~~elp-~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkv 147 (722)
T KOG0532|consen 77 TVFADLSRNRFSELP-EEACAFVSLESLILYHNCIR-------TIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKV 147 (722)
T ss_pred hhhhhccccccccCc-hHHHHHHHHHHHHHHhccce-------ecchhhhhhh-HHHHhhhccchhhcCChhhhcCccee
Confidence 455677777655553 55666667777777777776 5677777773 77788888887777777775556777
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCC--CccEEEe
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISG--KITRLYL 164 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l 164 (432)
|-+++|+++. +|..++....|..|+.+.|...+..+.+..+..|+.|++..|.+. ++|..+. .|..|++
T Consensus 148 li~sNNkl~~--------lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDf 218 (722)
T KOG0532|consen 148 LIVSNNKLTS--------LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDF 218 (722)
T ss_pred EEEecCcccc--------CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeec
Confidence 8888887754 666677777788888888766655556777777888887777655 3444333 4667777
Q ss_pred cccccccccccccCCCCCCEEeeccccccc
Q 042875 165 DQSAIEEVPSSIECLTDLEVLDLRDCKRLK 194 (432)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 194 (432)
++|++..+|..|.+|++|++|.+.+|.+..
T Consensus 219 ScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 219 SCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 788888888888888888888888776543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=8.6e-08 Score=63.71 Aligned_cols=59 Identities=36% Similarity=0.540 Sum_probs=43.0
Q ss_pred CCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCC
Q 042875 323 SSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~ 381 (432)
++|++|++++|++..++. .+..+++|++|++++|.++.++ ..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 357777777777777653 5677788888888888877654 4567788888888887763
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=6.8e-07 Score=88.72 Aligned_cols=107 Identities=25% Similarity=0.319 Sum_probs=77.9
Q ss_pred CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeecc
Q 042875 300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLR 377 (432)
Q Consensus 300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~ 377 (432)
++.|++++|.+.+.++.. +..+++|+.|++++|.+.. +|..++.+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 667777777776666665 4467788888888888775 7777888888888888888887 677778888888888888
Q ss_pred CCCCCcccCCCC----CCccEEeccCCCCccccC
Q 042875 378 RCNMLQSLPALP----LCLKYLHLTGCNMLRSLP 407 (432)
Q Consensus 378 ~~~~~~~~~~~~----~~L~~L~l~~c~~l~~l~ 407 (432)
+|.+.+.+|..+ ..+..+++.+|+.+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888777777432 345567777766554433
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=9.9e-07 Score=87.60 Aligned_cols=108 Identities=26% Similarity=0.389 Sum_probs=91.3
Q ss_pred CccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCC---CCCCccEEecc
Q 042875 324 SLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA---LPLCLKYLHLT 398 (432)
Q Consensus 324 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~ 398 (432)
.++.|++++|.+.. +|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|++.+.+|. .+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999987 8999999999999999999998 8898999999999999999999988885 45789999999
Q ss_pred CCCCccccCC----CCCccceeccccccccccCCCCC
Q 042875 399 GCNMLRSLPE----LPLCLQELDATNCNRLQSLPEIP 431 (432)
Q Consensus 399 ~c~~l~~l~~----~~~~L~~L~l~~c~~l~~lp~~p 431 (432)
+|..-..+|. ....+..+++.+++.+...|.++
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~ 535 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 535 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCC
Confidence 9876667775 23456688888887777666544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=8e-07 Score=59.00 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=23.5
Q ss_pred ccEEEecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCc
Q 042875 159 ITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC 214 (432)
Q Consensus 159 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (432)
++.|++.+|.+..++. .+..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444442 3334444444444444433333333444444444444443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=1.4e-07 Score=79.39 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=47.5
Q ss_pred CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCc------------CCCCCCCCCceEEEecCcc
Q 042875 80 KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS------------FPSNLHFVCPVTINFSYCV 147 (432)
Q Consensus 80 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~~~~~L~~L~l~~~~ 147 (432)
.+..++++++|+|.+..-.... ++..+.+-.+|+..+++. .+++. ++.+.+||+|+..+++.|-
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~---l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEE---LCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hhcceeEEeccCCcccHHHHHH---HHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3456667777777665321112 334455566677776665 22221 2345567777777777776
Q ss_pred cccccCCC-------CCCccEEEecccccc
Q 042875 148 TLIEFPQI-------SGKITRLYLDQSAIE 170 (432)
Q Consensus 148 ~~~~~~~~-------~~~L~~L~l~~~~~~ 170 (432)
+....+.- -..+.+|.+.+|+.+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 66554432 224555555555543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1e-07 Score=90.32 Aligned_cols=149 Identities=20% Similarity=0.194 Sum_probs=65.6
Q ss_pred CCCccEEEeccccccccccc-ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCC--CCCe
Q 042875 156 SGKITRLYLDQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKME--HLKR 232 (432)
Q Consensus 156 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~ 232 (432)
+..++.+++.+|.+..+... ...+.+++.+.+.++.....-. +..+..+..+.+..+.+...-+ +.... .|+.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~ 236 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRE 236 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHH
Confidence 34444444444444443332 3445566666666654332111 1112222222333332221110 11111 2666
Q ss_pred eeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc---cc-Cc-cccCCCCCcEEeccC
Q 042875 233 INLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS---QL-PS-SVADSNALLILDFSR 307 (432)
Q Consensus 233 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~-~~-~~~~~~~L~~L~l~~ 307 (432)
+.++++.+...+..+..++.+..+++.++.....- .+...+.+..+...++.+. .. .. .....+.++...+..
T Consensus 237 l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (414)
T KOG0531|consen 237 LYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLEL 314 (414)
T ss_pred HhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccccccc
Confidence 66777666655455566666777777665543321 1223344444444444433 11 11 133445556666655
Q ss_pred CCC
Q 042875 308 CKG 310 (432)
Q Consensus 308 ~~~ 310 (432)
+..
T Consensus 315 ~~~ 317 (414)
T KOG0531|consen 315 NPI 317 (414)
T ss_pred Ccc
Confidence 553
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=5.5e-06 Score=75.86 Aligned_cols=159 Identities=24% Similarity=0.360 Sum_probs=90.3
Q ss_pred cCCCCCccEEeecCCCCCCccccccCCcccccccccccc-cccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCc
Q 042875 247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSL 325 (432)
Q Consensus 247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 325 (432)
+..+.+++.|++++|. ...+|. + ..+|++|.++++ .+..+|..+ .++|++|++++|.....+| ..|
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence 3446788899999884 344452 2 246888888764 344555433 2578888888875444333 457
Q ss_pred cEEEeeccCCCCCchhhhcCCCCCEEEeeCCC-Cc--ccChhccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCC
Q 042875 326 GLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNN-FE--SLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNM 402 (432)
Q Consensus 326 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 402 (432)
+.|++..+....++. -+++|+.|.+.+++ .. .+|.. -.++|++|++.+|......+..+.+|+.|.+..+..
T Consensus 115 e~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~ 189 (426)
T PRK15386 115 RSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQK 189 (426)
T ss_pred ceEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEeccccc
Confidence 777776655433211 12356677765432 11 12211 125788888888876543334566888888876431
Q ss_pred cc-ccC--CCCCccceecccccccc
Q 042875 403 LR-SLP--ELPLCLQELDATNCNRL 424 (432)
Q Consensus 403 l~-~l~--~~~~~L~~L~l~~c~~l 424 (432)
.. .++ ..++++ .|++.+|-.+
T Consensus 190 ~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 190 TTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred ccccCccccccccc-Eechhhhccc
Confidence 11 111 144556 7777776443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=3.6e-08 Score=93.73 Aligned_cols=122 Identities=21% Similarity=0.181 Sum_probs=96.0
Q ss_pred EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--CCCCce
Q 042875 8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLV 85 (432)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~ 85 (432)
.+.++++|.+..++ .++.-++.|+.|||+.|++++ .. .+.+++ .|+.|+|+.|.++.+|... .|. |.
T Consensus 167 ~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~-------v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 167 ATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTK-------VD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhh-------hH-HHHhcc-cccccccccchhccccccchhhhh-he
Confidence 34677888776665 789999999999999999985 22 677887 9999999999999988876 554 99
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC--cCCCCCCCCCceEEEecCcccc
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR--SFPSNLHFVCPVTINFSYCVTL 149 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~ 149 (432)
.|.+++|.++.+ ..+.++.+|+.||+++|-+.. ++.++..+..|+.|.+.+|..-
T Consensus 236 ~L~lrnN~l~tL---------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL---------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh---------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999998753 235789999999999976544 3446666778888888888543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=9.2e-07 Score=75.59 Aligned_cols=208 Identities=18% Similarity=0.215 Sum_probs=115.0
Q ss_pred CCCCCEEeecccccccc--ccchhcCCCCccEEEecCccCcc--cchHhhhcCCCCCeeeeccccccccCccc-CCCCCc
Q 042875 179 LTDLEVLDLRDCKRLKR--ISTRFCKLRSLVDLFVNGCLNLE--RFPEILEKMEHLKRINLDGTAITELPSSF-ENLPGL 253 (432)
Q Consensus 179 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L 253 (432)
...++.+.+.+|.+... ....-..+..++++++.+|.+.. ++...+.+++.|+.|+++.|.+..--..+ ....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 33444555555544322 11212346777888888876553 24445567888888888887776221122 234567
Q ss_pred cEEeecCCCCCCcc-ccccCCccccccccccccccccc----CccccCCCCCcEEeccCCCCCCCCch-hhhcCCCCccE
Q 042875 254 EELFVSDCSKLDKL-PDNIGNLESLRHISAAGSAISQL----PSSVADSNALLILDFSRCKGLVSLPR-SLLLGLSSLGL 327 (432)
Q Consensus 254 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~ 327 (432)
+.|.+.+....... ...+..+|.++++.++.|....+ ...-.+.+.++.++...|....-... ....-++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 77777776543221 12234566777777777643311 11111223455555555432110000 01124677888
Q ss_pred EEeeccCCCCCc--hhhhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCcccC
Q 042875 328 LYIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQSLP 386 (432)
Q Consensus 328 L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~ 386 (432)
+.+..|.+.+.. .....+|.+-.|+++.++|.... +.+.++++|..|.+.++++...+.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 888777666522 22345567777888888777332 456778888888888888766654
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=3.5e-07 Score=86.68 Aligned_cols=231 Identities=17% Similarity=0.132 Sum_probs=143.6
Q ss_pred cCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeecc
Q 042875 12 LSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRF 91 (432)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 91 (432)
+..|.+..+ ...+..+..|+.|++.+|+|.. +...+..++ +|++|++++|.++.+.....++.|+.|++++
T Consensus 79 l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~-------i~~~l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 79 LRQNLIAKI-LNHLSKLKSLEALDLYDNKIEK-------IENLLSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred cchhhhhhh-hcccccccceeeeeccccchhh-------cccchhhhh-cchheeccccccccccchhhccchhhheecc
Confidence 344434432 2447888999999999999984 333367786 9999999999999999888888899999999
Q ss_pred ccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC--CCCCCCceEEEecCcccccccC-CCCCCccEEEecccc
Q 042875 92 SKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINFSYCVTLIEFP-QISGKITRLYLDQSA 168 (432)
Q Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~ 168 (432)
|.++.+ ..+..++.|+.+++++|.... +.. ...+..++.+.+..|.+...-. .....+..+++..+.
T Consensus 150 N~i~~~---------~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 150 NLISDI---------SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred Ccchhc---------cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccccc
Confidence 998853 235568899999999976543 333 5778899999998886553222 223334444566666
Q ss_pred cccccccccCCC--CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccc---c
Q 042875 169 IEEVPSSIECLT--DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE---L 243 (432)
Q Consensus 169 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~ 243 (432)
+..+.. +.... +|+.+++.+++.... +..+..+..+..+++..+..... ..+.....+..+....+.+.. .
T Consensus 220 i~~~~~-l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 220 ISKLEG-LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred ceeccC-cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 554322 22223 378888888765432 23455567777777776544322 112222333333333333331 1
Q ss_pred -C-cccCCCCCccEEeecCCCCCC
Q 042875 244 -P-SSFENLPGLEELFVSDCSKLD 265 (432)
Q Consensus 244 -~-~~~~~l~~L~~L~l~~~~~~~ 265 (432)
. ......+.++.+.+..++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hccccccccccccccccccCcccc
Confidence 1 113344556666666655443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=1.9e-06 Score=72.72 Aligned_cols=107 Identities=21% Similarity=0.149 Sum_probs=65.6
Q ss_pred cCCCCCcEEeccCCCCCCCC---chhhhcCCCCccEEEeeccCCCC------CchhhhcCCCCCEEEeeCCCCcc-----
Q 042875 295 ADSNALLILDFSRCKGLVSL---PRSLLLGLSSLGLLYIMNCAVME------IPQEIAYLSSLKSLDLRGNNFES----- 360 (432)
Q Consensus 295 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~----- 360 (432)
.+-|.|+.+....|++-..- ....+.+-..|+++.+..|.|.. +...+..+.+|+.|++.+|-++.
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 34567888887777643321 11222233578888888888875 12234567888888888887762
Q ss_pred cChhccCCCCCCeeeccCCCCCcccC---------CCCCCccEEeccCCC
Q 042875 361 LPASIKQLSRLCSLDLRRCNMLQSLP---------ALPLCLKYLHLTGCN 401 (432)
Q Consensus 361 l~~~~~~l~~L~~L~l~~~~~~~~~~---------~~~~~L~~L~l~~c~ 401 (432)
+...+...+.|++|.+.+|-+...-. ...+.|..|...++.
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 22334455668888888887654332 123566666666653
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=2.6e-08 Score=94.63 Aligned_cols=179 Identities=23% Similarity=0.204 Sum_probs=107.1
Q ss_pred cccccCCCCCCEEeeccccccccccchhcCC-CCccEEEecCcc---------CcccchHhhhcCCCCCeeeeccccccc
Q 042875 173 PSSIECLTDLEVLDLRDCKRLKRISTRFCKL-RSLVDLFVNGCL---------NLERFPEILEKMEHLKRINLDGTAITE 242 (432)
Q Consensus 173 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~---------~~~~~~~~l~~l~~L~~L~l~~~~~~~ 242 (432)
|-.+..+.+|++|.+++|.+.... .+..+ -+|++|.-.+.. -.+++...+. -..|...+++.|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHHh
Confidence 556778889999999998765411 11111 233443332210 0011111111 1246666777777776
Q ss_pred cCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCC
Q 042875 243 LPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGL 322 (432)
Q Consensus 243 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (432)
...++.-++.++.|+++.|++...- .+..+++|++||+++|++..+|..-..-..|..|.+++|...+-... ..+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gi---e~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGI---ENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhH---Hhh
Confidence 6666677788888888888776543 56778888888888888887765443334477777777764332222 255
Q ss_pred CCccEEEeeccCCCCCc--hhhhcCCCCCEEEeeCCCCc
Q 042875 323 SSLGLLYIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 323 ~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~ 359 (432)
.+|+.|++++|-+.+.. ..+..+..|+.|.|.||.+-
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66777777777665511 12344556777777777654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.7e-06 Score=51.08 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=19.2
Q ss_pred CccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCccc
Q 042875 324 SLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESL 361 (432)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l 361 (432)
+|++|++++|+++++|..++.+++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 35555555555555554455555555555555555543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=2.3e-05 Score=71.82 Aligned_cols=32 Identities=34% Similarity=0.391 Sum_probs=18.2
Q ss_pred CCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875 346 SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC 379 (432)
Q Consensus 346 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~ 379 (432)
++|++|++++|....+|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 466666666666554443332 46666666554
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.7e-06 Score=74.03 Aligned_cols=197 Identities=16% Similarity=0.102 Sum_probs=95.2
Q ss_pred CCCCCEEeeccccccc--cccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc--ccCcccCCCCCcc
Q 042875 179 LTDLEVLDLRDCKRLK--RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT--ELPSSFENLPGLE 254 (432)
Q Consensus 179 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~ 254 (432)
+++++.+++.+|.+.. .+...+.++|.|+.|+++.|.+...+...-....+|+.+-+.+..+. .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3444555555544322 23333444555555555554443332111122345555555444433 2233344455555
Q ss_pred EEeecCCCCCC---ccccccCCccccccccccccccc---ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEE
Q 042875 255 ELFVSDCSKLD---KLPDNIGNLESLRHISAAGSAIS---QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLL 328 (432)
Q Consensus 255 ~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 328 (432)
.|.++.|.... +-...-..-+.++++.+..|... ..-....-++++..+.+..|+.-+.-....+..++.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 55555542210 00000001134444444444322 1112223356677777777764443333334455667778
Q ss_pred EeeccCCCCCc--hhhhcCCCCCEEEeeCCCCcc-cC------hhccCCCCCCeee
Q 042875 329 YIMNCAVMEIP--QEIAYLSSLKSLDLRGNNFES-LP------ASIKQLSRLCSLD 375 (432)
Q Consensus 329 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~-l~------~~~~~l~~L~~L~ 375 (432)
+++.++|..+. .++..++.|+-|-++++.+.+ +- -.++.+++++.|+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 88888887733 456778888888888876651 11 1345666766663
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.1e-05 Score=48.99 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=32.3
Q ss_pred CCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875 346 SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 346 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~ 382 (432)
++|++|++++|+++.+|+.++++++|++|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999854
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.1e-05 Score=65.37 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=36.6
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC---CCCCCCCCCCcee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR---ILPSNFKPKNLVE 86 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~---~l~~~~~~~~L~~ 86 (432)
+|+++|.+.+. ..|..+++|..|.+..|+|+. +.+.+..+..+|..|.|++|++. .+.....|++|++
T Consensus 47 iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~-------I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 47 IDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR-------IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ecccccchhhc--ccCCCccccceEEecCCccee-------eccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 45555544444 355555555555555555552 23333332224555555555443 2222335555555
Q ss_pred eeecccccc
Q 042875 87 LNLRFSKVE 95 (432)
Q Consensus 87 L~l~~~~l~ 95 (432)
|.+-+|.++
T Consensus 118 Ltll~Npv~ 126 (233)
T KOG1644|consen 118 LTLLGNPVE 126 (233)
T ss_pred eeecCCchh
Confidence 555555443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=1.2e-06 Score=66.11 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=64.7
Q ss_pred CCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeee
Q 042875 296 DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLD 375 (432)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~ 375 (432)
....|...++++|. ..++|..+...++.++.+++++|.+.++|..++.++.|+.|+++.|.+...|..+..+.++-.|+
T Consensus 51 ~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 33445555666655 34445544556778899999999999999999999999999999999998888887788888887
Q ss_pred ccCCCC
Q 042875 376 LRRCNM 381 (432)
Q Consensus 376 l~~~~~ 381 (432)
.-+|..
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 777653
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=8.6e-06 Score=80.92 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=38.5
Q ss_pred CCccEEEecCccCcc-cchHhhh-cCCCCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCcccccc
Q 042875 204 RSLVDLFVNGCLNLE-RFPEILE-KMEHLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279 (432)
Q Consensus 204 ~~L~~L~l~~~~~~~-~~~~~l~-~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 279 (432)
.+|+.|+++|..... .++..++ .+|+|+.|.+.+..+. ++.....++|+|..||+++++...- ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666665543221 2333333 2556666666554443 3334445555555566555544322 23445555555
Q ss_pred cccccc
Q 042875 280 ISAAGS 285 (432)
Q Consensus 280 L~l~~~ 285 (432)
|.+.+=
T Consensus 200 L~mrnL 205 (699)
T KOG3665|consen 200 LSMRNL 205 (699)
T ss_pred HhccCC
Confidence 555443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=9.7e-06 Score=80.57 Aligned_cols=150 Identities=20% Similarity=0.252 Sum_probs=100.3
Q ss_pred CCCCCeeeecccccc--ccCcc-cCCCCCccEEeecCCCCC-CccccccCCcccccccccccccccccCccccCCCCCcE
Q 042875 227 MEHLKRINLDGTAIT--ELPSS-FENLPGLEELFVSDCSKL-DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLI 302 (432)
Q Consensus 227 l~~L~~L~l~~~~~~--~~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 302 (432)
-.+|++|++++...- ..+.. -..+|+|+.|.+.+-.+. +++.....++|+|+.||++++++..+ ...+++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 358999999885433 22222 246789999999986553 33444556789999999999999877 67888899999
Q ss_pred EeccCCCCCC-CCchhhhcCCCCccEEEeeccCCCCCc---h----hhhcCCCCCEEEeeCCCCc-c-cChhccCCCCCC
Q 042875 303 LDFSRCKGLV-SLPRSLLLGLSSLGLLYIMNCAVMEIP---Q----EIAYLSSLKSLDLRGNNFE-S-LPASIKQLSRLC 372 (432)
Q Consensus 303 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~---~----~~~~~~~L~~L~l~~n~l~-~-l~~~~~~l~~L~ 372 (432)
|.+.+-.+.. ..-.. ...+++|+.||++.......+ . .-..+|.|+.||.+++.+. . +...+..-++|+
T Consensus 200 L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 9888766544 22223 337899999999877655422 1 2235788999999888777 2 222333445555
Q ss_pred eeeccC
Q 042875 373 SLDLRR 378 (432)
Q Consensus 373 ~L~l~~ 378 (432)
.+..-+
T Consensus 279 ~i~~~~ 284 (699)
T KOG3665|consen 279 QIAALD 284 (699)
T ss_pred hhhhhh
Confidence 554443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=8.8e-05 Score=60.19 Aligned_cols=131 Identities=13% Similarity=-0.034 Sum_probs=88.5
Q ss_pred cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcc
Q 042875 30 NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSI 109 (432)
Q Consensus 30 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 109 (432)
+=+.+++.+.++.. ...++..-.+...++|++|.+..++..-.++.|..|.+.+|.|+.+..+. -
T Consensus 20 ~e~e~~LR~lkip~--------ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L-------~ 84 (233)
T KOG1644|consen 20 RERELDLRGLKIPV--------IENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDL-------D 84 (233)
T ss_pred cccccccccccccc--------hhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccch-------h
Confidence 34567777776652 12233333478888999998888888888889999999999998753221 2
Q ss_pred cCcccCceEeccCCccC--CcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEee
Q 042875 110 QNFKYLSALSFEGCKSL--RSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDL 187 (432)
Q Consensus 110 ~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 187 (432)
.-+++|+.|.+.+|.+. +++.++..||.|++|.+-+|.....-..- -..+..+|+|+.||+
T Consensus 85 ~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR-----------------~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 85 TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR-----------------LYVLYKLPSLRTLDF 147 (233)
T ss_pred hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCce-----------------eEEEEecCcceEeeh
Confidence 35677899999887654 35667888889999988888755321110 013445677888887
Q ss_pred ccccc
Q 042875 188 RDCKR 192 (432)
Q Consensus 188 ~~~~~ 192 (432)
.....
T Consensus 148 ~kVt~ 152 (233)
T KOG1644|consen 148 QKVTR 152 (233)
T ss_pred hhhhH
Confidence 76543
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.55 E-value=8.4e-06 Score=79.34 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=17.8
Q ss_pred CCCCCEEeecccccccc--ccchhcCCCCccEEEecC
Q 042875 179 LTDLEVLDLRDCKRLKR--ISTRFCKLRSLVDLFVNG 213 (432)
Q Consensus 179 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~ 213 (432)
++.|+.+.+.+|..... .......+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45555555555544333 223344555666666554
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=2.6e-05 Score=59.09 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=6.9
Q ss_pred CCCeeeeccccccccC
Q 042875 229 HLKRINLDGTAITELP 244 (432)
Q Consensus 229 ~L~~L~l~~~~~~~~~ 244 (432)
.|+..++++|.+..+|
T Consensus 54 el~~i~ls~N~fk~fp 69 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFP 69 (177)
T ss_pred eEEEEecccchhhhCC
Confidence 3334444444444443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=9.1e-06 Score=68.99 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=73.9
Q ss_pred cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCC
Q 042875 28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPS 107 (432)
Q Consensus 28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 107 (432)
+.+.+.|+.-||.+.+| ....++| .|+.|.|+-|.+.++.....|++|++|.|..|.|.++. . ..
T Consensus 18 l~~vkKLNcwg~~L~DI--------sic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sld--E----L~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--------SICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLD--E----LE 82 (388)
T ss_pred HHHhhhhcccCCCccHH--------HHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHH--H----HH
Confidence 45677888888888753 2345676 89999999999999988889999999999999887542 1 12
Q ss_pred cccCcccCceEeccCCccCCcCCC------CCCCCCceEEE
Q 042875 108 SIQNFKYLSALSFEGCKSLRSFPS------NLHFVCPVTIN 142 (432)
Q Consensus 108 ~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~ 142 (432)
.+.++++|++|+|..|.-.+.-+. +-.+|+|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 467889999999988877665432 22366776664
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=9.5e-05 Score=71.96 Aligned_cols=131 Identities=29% Similarity=0.308 Sum_probs=67.8
Q ss_pred ccCCCCCcEEeccCCCCCCCCchh-hhcCCCCccEEEeeccC-CCC--CchhhhcCCCCCEEEeeCCCCc---ccChhcc
Q 042875 294 VADSNALLILDFSRCKGLVSLPRS-LLLGLSSLGLLYIMNCA-VME--IPQEIAYLSSLKSLDLRGNNFE---SLPASIK 366 (432)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~n~l~---~l~~~~~ 366 (432)
...+++++.++++.+...++.... ....+++|+.|.+.+|. +++ +......+++|++|++++|... .+.....
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 344466666777666643333322 22236677777766666 444 4444566777777777777443 2333344
Q ss_pred CCCCCCeeeccCCC---CCcccC-----CCC-CCccEEeccCCCCccccCC---CCCccc-eecccccccc
Q 042875 367 QLSRLCSLDLRRCN---MLQSLP-----ALP-LCLKYLHLTGCNMLRSLPE---LPLCLQ-ELDATNCNRL 424 (432)
Q Consensus 367 ~l~~L~~L~l~~~~---~~~~~~-----~~~-~~L~~L~l~~c~~l~~l~~---~~~~L~-~L~l~~c~~l 424 (432)
.+++++.+.+..+. .++... ... ..++.+.+.+|+.++.+.- ...... .+.+.+|+.+
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 56655555444333 222221 111 2455666666666554332 111222 5677777776
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.002 Score=54.71 Aligned_cols=86 Identities=24% Similarity=0.247 Sum_probs=44.1
Q ss_pred cCCcccccccccccc--ccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc----hhhh
Q 042875 271 IGNLESLRHISAAGS--AIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP----QEIA 343 (432)
Q Consensus 271 ~~~l~~L~~L~l~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~ 343 (432)
+..+++|++|.+++| ++. .++..+..+++|+++++++|+....-...-...+.+|..|++.+|..+.+- ..+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 344556666666666 332 444455555666666666665322111111224456666666666655521 1244
Q ss_pred cCCCCCEEEeeCC
Q 042875 344 YLSSLKSLDLRGN 356 (432)
Q Consensus 344 ~~~~L~~L~l~~n 356 (432)
.+++|++|+-...
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 5566666655444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00019 Score=61.21 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=68.0
Q ss_pred ccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC---CCCCceee
Q 042875 11 DLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF---KPKNLVEL 87 (432)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~---~~~~L~~L 87 (432)
+.-+..+.++ ....+|+.|+.|.||.|+|.. ...+..+. +|++|+|+.|.+.++.... ++++||.|
T Consensus 25 Ncwg~~L~DI--sic~kMp~lEVLsLSvNkIss--------L~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 25 NCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--------LAPLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred cccCCCccHH--HHHHhcccceeEEeecccccc--------chhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3344434444 455899999999999999974 44677885 9999999999998888775 89999999
Q ss_pred eeccccccccCCCcccccCCcccCcccCceEe
Q 042875 88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALS 119 (432)
Q Consensus 88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 119 (432)
+|..|.-... +....-...+.-+++|+.|+
T Consensus 94 WL~ENPCc~~--ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGE--AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccc--cchhHHHHHHHHcccchhcc
Confidence 9998864321 11011112355677888775
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.0045 Score=52.69 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=56.9
Q ss_pred hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccC--CcCCCCCCCCCc
Q 042875 61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL--RSFPSNLHFVCP 138 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L 138 (432)
.|+.|++.+..++++...-.+++|+.|.++.|..... +. ++.....+++|+++++++|.+. +++.++..+++|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~--~~---l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS--GG---LEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCccccc--cc---ceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 6777777777777777777778888888888844321 12 3333445688888888887654 345566667778
Q ss_pred eEEEecCcccc
Q 042875 139 VTINFSYCVTL 149 (432)
Q Consensus 139 ~~L~l~~~~~~ 149 (432)
..|++..|...
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 88888777544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.89 E-value=0.039 Score=42.67 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=31.9
Q ss_pred cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC-cccCCCCCc
Q 042875 175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGL 253 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L 253 (432)
.+..+++|+.+.+.. .....-...|..+.+|+.+.+... ........+..+.+++.+.+.. .+..++ ..+..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 444555666666653 222222334555556666666542 2222223344454555555543 222222 233445555
Q ss_pred cEEeecC
Q 042875 254 EELFVSD 260 (432)
Q Consensus 254 ~~L~l~~ 260 (432)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.004 Score=31.30 Aligned_cols=19 Identities=53% Similarity=0.857 Sum_probs=11.0
Q ss_pred CCEEEeeCCCCcccChhcc
Q 042875 348 LKSLDLRGNNFESLPASIK 366 (432)
Q Consensus 348 L~~L~l~~n~l~~l~~~~~ 366 (432)
|++|++++|+++.+|+.++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666665555443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.54 E-value=0.061 Score=41.56 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=19.5
Q ss_pred hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC-cccCCCCCccEEeec
Q 042875 200 FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVS 259 (432)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 259 (432)
|..+.+|+.+.+.. .....-...+..+++++.+.+..+ +..++ ..+..+++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44455555555543 122112223444445555555442 33221 223344444444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.96 E-value=0.018 Score=26.78 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=5.8
Q ss_pred CCCEEEeeCCCCccc
Q 042875 347 SLKSLDLRGNNFESL 361 (432)
Q Consensus 347 ~L~~L~l~~n~l~~l 361 (432)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555554443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.0039 Score=50.91 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=47.5
Q ss_pred CCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcc-----cCCCCCCccEEeccCCCCccccCC----CCCccceec
Q 042875 348 LKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQS-----LPALPLCLKYLHLTGCNMLRSLPE----LPLCLQELD 417 (432)
Q Consensus 348 L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~ 417 (432)
++.++-+++.|. +--..+..+++++.|.+.+|..... +....++|+.|+|++|+.+++-.- .+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555555 2224455666677777777765443 334556788888888887775432 566777777
Q ss_pred ccccccc
Q 042875 418 ATNCNRL 424 (432)
Q Consensus 418 l~~c~~l 424 (432)
+++.+.+
T Consensus 183 l~~l~~v 189 (221)
T KOG3864|consen 183 LYDLPYV 189 (221)
T ss_pred hcCchhh
Confidence 7776655
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.29 E-value=0.021 Score=28.64 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=9.6
Q ss_pred cceeeeecccccc
Q 042875 30 NLRLLKFYVPKFY 42 (432)
Q Consensus 30 ~L~~L~l~~~~i~ 42 (432)
+|++||+++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677788777776
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.38 E-value=0.00083 Score=64.12 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=45.4
Q ss_pred cccccccccccccccc-----cCccccCCCC-CcEEeccCCCCCCCCchhh---hcCC-CCccEEEeeccCCCC-----C
Q 042875 274 LESLRHISAAGSAISQ-----LPSSVADSNA-LLILDFSRCKGLVSLPRSL---LLGL-SSLGLLYIMNCAVME-----I 338 (432)
Q Consensus 274 l~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~-----~ 338 (432)
..++++|++.++.+.. +...+...+. +..+++..|...+...... +..+ ..+++++++.|.+++ +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4556666666665441 1122333333 4556666665333212111 2222 455677777777665 4
Q ss_pred chhhhcCCCCCEEEeeCCCCc
Q 042875 339 PQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 339 ~~~~~~~~~L~~L~l~~n~l~ 359 (432)
...+..++.++.+.+..|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 445566667777777777665
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.37 E-value=0.0021 Score=61.36 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=72.5
Q ss_pred ccCCccccccccccccccc-----ccCcccc----CCCCCcEEeccCCCCCCCCchh---hhcCCCC-ccEEEeeccCCC
Q 042875 270 NIGNLESLRHISAAGSAIS-----QLPSSVA----DSNALLILDFSRCKGLVSLPRS---LLLGLSS-LGLLYIMNCAVM 336 (432)
Q Consensus 270 ~~~~l~~L~~L~l~~~~~~-----~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-L~~L~l~~~~~~ 336 (432)
.+....+++.+++..|.+. .++..+. ...+++.|+++.|......... .....+. +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 3444566666666666553 1222233 4677888999888755322211 1223334 666888888877
Q ss_pred C-----CchhhhcC-CCCCEEEeeCCCCc-----ccChhccCCCCCCeeeccCCCCCc
Q 042875 337 E-----IPQEIAYL-SSLKSLDLRGNNFE-----SLPASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 337 ~-----~~~~~~~~-~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~L~l~~~~~~~ 383 (432)
+ +...+..+ +.++.+++.+|.++ .+...+..++.++++.+..|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 5 33445555 67889999999887 345666778888889888887644
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.23 E-value=0.089 Score=27.56 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=12.1
Q ss_pred Cccceecccccccccc
Q 042875 411 LCLQELDATNCNRLQS 426 (432)
Q Consensus 411 ~~L~~L~l~~c~~l~~ 426 (432)
+.|++|++++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5678888888887765
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=0.037 Score=45.43 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=36.7
Q ss_pred cccCCCCCcEEeccCCCCCCCCchhhhc-CCCCccEEEeeccC-CCC-CchhhhcCCCCCEEEeeC
Q 042875 293 SVADSNALLILDFSRCKGLVSLPRSLLL-GLSSLGLLYIMNCA-VME-IPQEIAYLSSLKSLDLRG 355 (432)
Q Consensus 293 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~ 355 (432)
.+..++.++.|.+..|...++....... ..++|+.|++++|. |++ -...+..+++|+.|.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3455566666777777666555544332 24667777777664 444 344556666666666655
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.86 E-value=0.15 Score=26.50 Aligned_cols=19 Identities=53% Similarity=0.842 Sum_probs=14.0
Q ss_pred CccceeccccccccccCCCC
Q 042875 411 LCLQELDATNCNRLQSLPEI 430 (432)
Q Consensus 411 ~~L~~L~l~~c~~l~~lp~~ 430 (432)
++|++|++++ ++++.+|++
T Consensus 2 ~~L~~L~vs~-N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPEL 20 (26)
T ss_pred cccceeecCC-CccccCccc
Confidence 4677778876 678788775
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.88 E-value=0.3 Score=25.46 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=12.5
Q ss_pred CCCCEEEeeCCCCcccChh
Q 042875 346 SSLKSLDLRGNNFESLPAS 364 (432)
Q Consensus 346 ~~L~~L~l~~n~l~~l~~~ 364 (432)
++|+.|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4667777777777766654
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.88 E-value=0.3 Score=25.46 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=12.5
Q ss_pred CCCCEEEeeCCCCcccChh
Q 042875 346 SSLKSLDLRGNNFESLPAS 364 (432)
Q Consensus 346 ~~L~~L~l~~n~l~~l~~~ 364 (432)
++|+.|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4667777777777766654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.18 E-value=0.032 Score=46.78 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=66.8
Q ss_pred ecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeecccccc
Q 042875 17 CINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVE 95 (432)
Q Consensus 17 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~ 95 (432)
..++.-..++...+.+.||++.|+.. .+-..++.+. .+..|+++.+.+..+|..+ ....++.+++..|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~v-------n~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLV-------NLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHH-------hhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh
Confidence 33444456777888889999888876 3444555564 7888888888777777776 5566777788877776
Q ss_pred ccCCCcccccCCcccCcccCceEeccCCccC
Q 042875 96 QPWEGEKACVPSSIQNFKYLSALSFEGCKSL 126 (432)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (432)
. .|..+++.++++.+++.++.+.
T Consensus 102 ~--------~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 102 Q--------QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred h--------CCccccccCCcchhhhccCcch
Confidence 5 5666778888888777776543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.31 E-value=0.38 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=10.9
Q ss_pred cccceeeeeccccccc
Q 042875 28 MSNLRLLKFYVPKFYE 43 (432)
Q Consensus 28 l~~L~~L~l~~~~i~~ 43 (432)
+++|++|+|++|+|.+
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 4788899999998875
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.18 E-value=0.21 Score=42.11 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=69.2
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVEL 87 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L 87 (432)
.||++.|+..... ..|.-++++..||++.|++. -+|...+... .++.++++.|.....|-.+ ..++++++
T Consensus 46 vld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~-------~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 46 VLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIK-------FLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred eehhhhhHHHhhc-cchHHHHHHHHHhccHhhHh-------hChhhHHHHH-HHHHHHhhccchhhCCccccccCCcchh
Confidence 4888888776665 67888999999999999986 6788888884 8999999999888888887 88999999
Q ss_pred eeccccccccCCC
Q 042875 88 NLRFSKVEQPWEG 100 (432)
Q Consensus 88 ~l~~~~l~~~~~~ 100 (432)
++.++.+..-+.+
T Consensus 117 e~k~~~~~~~~~~ 129 (326)
T KOG0473|consen 117 EQKKTEFFRKLFG 129 (326)
T ss_pred hhccCcchHHHHh
Confidence 9999987654433
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.82 E-value=2.2 Score=22.30 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=11.3
Q ss_pred CCceeeeeccccccc
Q 042875 82 KNLVELNLRFSKVEQ 96 (432)
Q Consensus 82 ~~L~~L~l~~~~l~~ 96 (432)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567888888887764
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.19 E-value=2.1 Score=41.03 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=44.4
Q ss_pred CCCCccEEEeeccCCCC---CchhhhcCCCCCEEEeeCC--CCcccChhcc--CCCCCCeeeccCCCCCcccC-------
Q 042875 321 GLSSLGLLYIMNCAVME---IPQEIAYLSSLKSLDLRGN--NFESLPASIK--QLSRLCSLDLRRCNMLQSLP------- 386 (432)
Q Consensus 321 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~n--~l~~l~~~~~--~l~~L~~L~l~~~~~~~~~~------- 386 (432)
..+.+..+.+++|++.. +.......|+|..|+|++| .+... .++. +...|++|.+.||++.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 44566666677766555 2222345577888888887 33321 2233 33456788888888765443
Q ss_pred ---CCCCCccEEecc
Q 042875 387 ---ALPLCLKYLHLT 398 (432)
Q Consensus 387 ---~~~~~L~~L~l~ 398 (432)
+.+++|..||=.
T Consensus 295 ~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHhcchheeecCc
Confidence 345666666533
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.81 E-value=1.4 Score=42.22 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=7.3
Q ss_pred ccccceeeeecccccc
Q 042875 27 NMSNLRLLKFYVPKFY 42 (432)
Q Consensus 27 ~l~~L~~L~l~~~~i~ 42 (432)
+.|.+..++|++|++.
T Consensus 216 n~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY 231 (585)
T ss_pred CCcceeeeecccchhh
Confidence 3444444444444443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.12 E-value=3.4 Score=21.95 Aligned_cols=15 Identities=27% Similarity=0.281 Sum_probs=11.6
Q ss_pred ccceeeeeccccccc
Q 042875 29 SNLRLLKFYVPKFYE 43 (432)
Q Consensus 29 ~~L~~L~l~~~~i~~ 43 (432)
+.|++|||++|.+.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578888888888763
No 89
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=45.60 E-value=32 Score=20.49 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=13.4
Q ss_pred hhhcceeecCCCCCCCCCCCCCCCCceeeee
Q 042875 59 PEKLRYLHWDTYPLRILPSNFKPKNLVELNL 89 (432)
Q Consensus 59 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l 89 (432)
|.++++|.+....-..+....-..+|++|.+
T Consensus 11 P~~l~~L~~g~~fn~~i~~~~lP~sl~~L~f 41 (44)
T PF05725_consen 11 PSSLKSLIFGSSFNQPIEPGSLPNSLKSLSF 41 (44)
T ss_pred CCCCeEEEECCccCccCCCCccCCCceEEEe
Confidence 3455555554333333333333334555544
No 90
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=30.38 E-value=37 Score=16.51 Aligned_cols=18 Identities=67% Similarity=1.184 Sum_probs=11.3
Q ss_pred CceeeeeccccccccCCC
Q 042875 83 NLVELNLRFSKVEQPWEG 100 (432)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~ 100 (432)
+|.+|++.+.++..+|.|
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 356677777666666554
No 91
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=20.61 E-value=20 Score=22.97 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=14.5
Q ss_pred cceeccccccccccCCCCCC
Q 042875 413 LQELDATNCNRLQSLPEIPS 432 (432)
Q Consensus 413 L~~L~l~~c~~l~~lp~~p~ 432 (432)
|..|.+..+..+..+|++|+
T Consensus 33 LtfLhLKEaGALd~Lp~lp~ 52 (62)
T PF06540_consen 33 LTFLHLKEAGALDNLPDLPS 52 (62)
T ss_pred HHHHHHHHhcchhccCCCcc
Confidence 45667777777778887774
Done!