Query 042875
Match_columns 432
No_of_seqs 226 out of 3187
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 18:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.1E-42 3.1E-46 346.8 28.4 403 10-426 205-742 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-41 6E-46 344.7 26.9 364 29-407 294-744 (768)
3 4eco_A Uncharacterized protein 100.0 8.1E-41 2.8E-45 332.4 24.2 413 7-423 83-599 (636)
4 3t6q_A CD180 antigen; protein- 100.0 8.5E-39 2.9E-43 317.8 33.2 379 8-401 36-511 (606)
5 4ecn_A Leucine-rich repeat pro 100.0 4.8E-39 1.6E-43 325.0 26.6 408 7-423 325-839 (876)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-39 1.6E-43 319.7 26.0 168 9-190 36-214 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.7E-38 9.3E-43 314.2 30.7 406 10-425 62-561 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 8E-38 2.7E-42 310.8 27.9 393 10-424 61-558 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 9.1E-38 3.1E-42 308.3 25.8 404 9-429 32-536 (570)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-36 3.8E-41 306.5 33.5 405 9-429 29-577 (680)
11 2z81_A CD282 antigen, TOLL-lik 100.0 7.9E-37 2.7E-41 300.1 27.2 402 9-428 30-489 (549)
12 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-35 4.8E-40 298.5 34.6 401 9-428 53-600 (680)
13 4eco_A Uncharacterized protein 100.0 2E-37 7E-42 307.9 20.4 380 29-429 81-583 (636)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-36 8.4E-41 294.5 24.5 371 9-401 25-479 (520)
15 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-36 3.4E-40 305.5 30.1 402 9-426 28-540 (844)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-36 1.5E-40 292.8 22.4 395 8-429 3-461 (520)
17 3j0a_A TOLL-like receptor 5; m 100.0 1E-35 3.5E-40 305.4 26.2 398 10-425 53-561 (844)
18 4ecn_A Leucine-rich repeat pro 100.0 3.7E-35 1.3E-39 296.7 26.1 379 29-429 323-823 (876)
19 2z63_A TOLL-like receptor 4, v 100.0 4.6E-35 1.6E-39 289.0 25.4 377 9-406 56-534 (570)
20 1jl5_A Outer protein YOPM; leu 100.0 2.5E-34 8.6E-39 273.7 25.9 334 10-383 16-371 (454)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-34 4.7E-39 284.2 24.2 392 9-425 54-511 (549)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.9E-34 2E-38 280.0 25.8 372 9-402 56-509 (562)
23 1o6v_A Internalin A; bacterial 100.0 4.6E-33 1.6E-37 267.2 28.6 342 26-401 43-386 (466)
24 1o6v_A Internalin A; bacterial 100.0 2.3E-32 7.9E-37 262.4 30.6 339 10-383 51-389 (466)
25 1jl5_A Outer protein YOPM; leu 100.0 5E-33 1.7E-37 264.7 25.2 358 21-431 4-376 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 8.9E-33 3E-37 264.9 23.4 358 10-386 15-412 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-32 6.3E-37 269.4 26.2 395 8-429 34-490 (562)
28 4fmz_A Internalin; leucine ric 100.0 3.9E-31 1.3E-35 244.3 26.9 306 24-381 39-345 (347)
29 3v47_A TOLL-like receptor 5B a 100.0 3.8E-31 1.3E-35 253.6 26.9 356 33-407 14-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3E-31 1E-35 252.7 24.5 307 20-381 33-351 (457)
31 4g8a_A TOLL-like receptor 4; l 100.0 8.6E-31 2.9E-35 261.8 27.7 379 9-401 56-578 (635)
32 4fmz_A Internalin; leucine ric 100.0 2E-30 6.7E-35 239.6 26.6 303 55-401 40-344 (347)
33 2id5_A Lingo-1, leucine rich r 100.0 8.4E-30 2.9E-34 245.6 26.4 295 60-382 32-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.2E-30 2.1E-34 243.6 23.9 323 9-387 46-392 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 1.1E-29 3.8E-34 244.8 22.9 310 10-337 16-334 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.6E-29 9.1E-34 235.7 22.6 301 28-381 44-351 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 5.1E-29 1.7E-33 233.7 23.8 304 57-401 43-350 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.3E-28 4.5E-33 243.3 22.6 299 61-382 52-358 (597)
39 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-27 5.1E-32 238.3 28.5 358 9-382 80-580 (635)
40 3oja_B Anopheles plasmodium-re 100.0 8.1E-28 2.8E-32 237.6 24.1 302 28-359 50-358 (597)
41 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-31 1.3E-35 254.0 -1.1 370 10-401 8-438 (461)
42 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-27 4.9E-32 216.5 15.3 247 158-406 51-307 (313)
43 1z7x_W Ribonuclease inhibitor; 99.9 4.2E-30 1.4E-34 246.8 -1.8 369 28-422 2-438 (461)
44 1xku_A Decorin; proteoglycan, 99.9 5.4E-26 1.9E-30 208.2 25.0 285 61-380 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-26 6.6E-31 211.3 22.0 284 61-380 34-331 (332)
46 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-27 8.3E-32 215.0 14.9 210 173-386 94-308 (313)
47 1xku_A Decorin; proteoglycan, 99.9 1.5E-25 5.1E-30 205.3 25.2 282 83-401 32-330 (330)
48 3ogk_B Coronatine-insensitive 99.9 9.2E-29 3.1E-33 245.0 4.0 364 26-401 109-524 (592)
49 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-25 4E-30 206.1 23.1 281 83-401 34-331 (332)
50 3ogk_B Coronatine-insensitive 99.9 7.9E-28 2.7E-32 238.3 -0.2 393 21-426 65-527 (592)
51 4fcg_A Uncharacterized protein 99.9 8.8E-25 3E-29 199.3 18.1 218 157-378 81-310 (328)
52 4fcg_A Uncharacterized protein 99.9 1.1E-24 3.8E-29 198.7 17.3 233 28-288 80-314 (328)
53 2z80_A TOLL-like receptor 2, v 99.9 4.7E-24 1.6E-28 197.1 18.3 242 158-401 53-312 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.9 5.6E-23 1.9E-27 201.5 25.8 261 60-385 40-300 (622)
55 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-24 1.7E-28 190.8 16.1 219 162-383 16-239 (285)
56 2z66_A Variable lymphocyte rec 99.9 1.3E-23 4.4E-28 190.3 18.2 242 139-383 10-262 (306)
57 2z66_A Variable lymphocyte rec 99.9 4.4E-24 1.5E-28 193.3 15.0 166 170-359 91-261 (306)
58 3g06_A SSPH2 (leucine-rich rep 99.9 9.4E-23 3.2E-27 199.9 24.9 264 29-365 40-304 (622)
59 2p1m_B Transport inhibitor res 99.9 2.2E-26 7.6E-31 228.0 -2.6 334 61-402 106-518 (594)
60 2z80_A TOLL-like receptor 2, v 99.9 1.4E-23 4.8E-28 193.9 15.1 274 26-337 28-315 (353)
61 1wwl_A Monocyte differentiatio 99.9 5.8E-25 2E-29 199.4 5.2 201 178-382 93-309 (312)
62 1ozn_A Reticulon 4 receptor; N 99.9 7.9E-23 2.7E-27 183.1 16.0 202 157-359 32-238 (285)
63 3zyj_A Leucine-rich repeat-con 99.9 3.8E-22 1.3E-26 189.9 21.3 223 157-381 64-291 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 5E-22 1.7E-26 189.7 21.9 223 157-381 75-302 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 6.7E-22 2.3E-26 188.2 22.2 238 159-401 45-290 (440)
66 3o53_A Protein LRIM1, AGAP0063 99.9 9.4E-24 3.2E-28 191.9 8.6 238 157-406 34-278 (317)
67 3zyi_A Leucine-rich repeat-con 99.9 8.3E-22 2.8E-26 188.2 22.4 238 159-401 56-301 (452)
68 2p1m_B Transport inhibitor res 99.9 2.7E-25 9.1E-30 220.3 -2.5 365 25-400 101-541 (594)
69 3o53_A Protein LRIM1, AGAP0063 99.9 4.1E-24 1.4E-28 194.3 4.5 237 30-311 11-250 (317)
70 1wwl_A Monocyte differentiatio 99.9 8.9E-24 3E-28 191.6 4.9 238 180-425 43-309 (312)
71 3oja_A Leucine-rich immune mol 99.9 3.5E-22 1.2E-26 191.9 11.1 213 61-311 35-250 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 4.5E-21 1.5E-25 170.8 17.1 214 168-384 18-239 (276)
73 3oja_A Leucine-rich immune mol 99.9 4.3E-21 1.5E-25 184.3 15.2 232 155-398 32-270 (487)
74 1p9a_G Platelet glycoprotein I 99.8 1.3E-19 4.5E-24 162.0 18.7 197 158-359 11-208 (290)
75 3rfs_A Internalin B, repeat mo 99.8 1.7E-20 6E-25 166.4 12.4 225 29-298 19-246 (272)
76 2xwt_C Thyrotropin receptor; s 99.8 5.5E-20 1.9E-24 160.0 14.7 195 158-380 32-237 (239)
77 3rfs_A Internalin B, repeat mo 99.8 3.2E-20 1.1E-24 164.7 13.2 211 23-275 35-246 (272)
78 2o6q_A Variable lymphocyte rec 99.8 2.6E-19 8.9E-24 158.7 19.1 197 159-381 18-217 (270)
79 1p9a_G Platelet glycoprotein I 99.8 2E-19 6.8E-24 160.8 18.4 202 175-382 5-208 (290)
80 2ast_B S-phase kinase-associat 99.8 3.5E-21 1.2E-25 176.7 7.1 228 157-388 70-312 (336)
81 2ast_B S-phase kinase-associat 99.8 7.2E-21 2.5E-25 174.6 9.1 251 83-365 48-313 (336)
82 2xwt_C Thyrotropin receptor; s 99.8 6E-20 2E-24 159.8 13.7 196 205-401 32-237 (239)
83 2z62_A TOLL-like receptor 4, v 99.8 1.7E-19 5.9E-24 160.5 16.3 36 324-359 201-237 (276)
84 2ca6_A RAN GTPase-activating p 99.8 1.2E-21 4E-26 183.3 1.0 242 105-359 24-316 (386)
85 4glp_A Monocyte differentiatio 99.8 1E-19 3.5E-24 164.7 12.9 201 179-382 90-307 (310)
86 1h6u_A Internalin H; cell adhe 99.8 6E-19 2E-23 159.3 16.7 176 175-362 58-233 (308)
87 2o6q_A Variable lymphocyte rec 99.8 1.8E-18 6.1E-23 153.3 19.5 88 176-263 129-217 (270)
88 4glp_A Monocyte differentiatio 99.8 1.2E-19 4E-24 164.3 12.1 218 181-400 65-304 (310)
89 1h6u_A Internalin H; cell adhe 99.8 6.9E-19 2.4E-23 158.9 16.0 194 177-383 38-231 (308)
90 2ca6_A RAN GTPase-activating p 99.8 4.5E-21 1.6E-25 179.3 1.6 63 321-383 214-288 (386)
91 3goz_A Leucine-rich repeat-con 99.8 2.9E-20 9.8E-25 172.2 2.1 36 299-334 226-264 (362)
92 3goz_A Leucine-rich repeat-con 99.8 9.6E-20 3.3E-24 168.6 5.4 210 175-384 45-299 (362)
93 4ay9_X Follicle-stimulating ho 99.8 1.4E-17 4.8E-22 153.3 16.7 233 161-399 13-255 (350)
94 4ay9_X Follicle-stimulating ho 99.8 3.8E-17 1.3E-21 150.4 18.3 238 63-332 12-255 (350)
95 3m19_A Variable lymphocyte rec 99.7 6.6E-17 2.2E-21 141.6 16.0 175 159-359 16-192 (251)
96 3m19_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 139.6 17.9 177 61-265 15-193 (251)
97 1h6t_A Internalin B; cell adhe 99.7 6.6E-17 2.2E-21 144.6 13.7 170 178-359 44-213 (291)
98 3cvr_A Invasion plasmid antige 99.7 7.5E-17 2.6E-21 156.2 15.0 177 158-359 60-243 (571)
99 3cvr_A Invasion plasmid antige 99.7 1.7E-16 5.9E-21 153.7 16.2 191 30-271 60-250 (571)
100 1h6t_A Internalin B; cell adhe 99.7 2.1E-16 7.3E-21 141.3 14.3 173 200-383 42-214 (291)
101 1m9s_A Internalin B; cell inva 99.7 1.4E-16 4.7E-21 156.0 13.4 171 55-242 39-211 (605)
102 4ezg_A Putative uncharacterize 99.7 4.2E-16 1.4E-20 131.0 12.7 86 175-262 107-192 (197)
103 4ezg_A Putative uncharacterize 99.7 3.4E-16 1.2E-20 131.5 12.1 150 226-381 42-193 (197)
104 2o6s_A Variable lymphocyte rec 99.7 7.7E-16 2.7E-20 130.7 13.6 152 252-408 29-183 (208)
105 2o6s_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 132.2 11.6 146 162-309 12-159 (208)
106 1m9s_A Internalin B; cell inva 99.7 1.3E-15 4.4E-20 149.2 15.5 172 177-360 40-211 (605)
107 3e6j_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 128.3 14.9 152 230-384 21-174 (229)
108 1xeu_A Internalin C; cellular 99.6 5E-16 1.7E-20 136.6 9.1 147 225-381 38-184 (263)
109 2v9t_B SLIT homolog 2 protein 99.6 4.9E-15 1.7E-19 126.7 13.6 147 232-381 15-164 (220)
110 1dce_A Protein (RAB geranylger 99.6 4.3E-17 1.5E-21 158.7 -0.2 179 177-361 346-548 (567)
111 2v9t_B SLIT homolog 2 protein 99.6 9E-15 3.1E-19 125.0 13.4 150 161-312 15-166 (220)
112 1xeu_A Internalin C; cellular 99.6 6.9E-15 2.4E-19 129.3 11.1 172 27-244 17-188 (263)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-14 6.8E-19 122.9 13.6 151 161-313 15-168 (220)
114 1dce_A Protein (RAB geranylger 99.6 1.9E-17 6.5E-22 161.2 -6.3 186 79-289 346-547 (567)
115 3e6j_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 122.7 13.7 149 160-311 22-172 (229)
116 2xot_A Amphoterin-induced prot 99.6 1.2E-14 4.1E-19 134.2 12.0 104 159-262 41-147 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 5.3E-14 1.8E-18 120.2 13.5 130 159-288 34-166 (220)
118 2ell_A Acidic leucine-rich nuc 99.5 2.8E-14 9.5E-19 116.6 10.9 129 251-381 24-159 (168)
119 2xot_A Amphoterin-induced prot 99.5 4.5E-14 1.5E-18 130.4 12.5 174 62-264 20-202 (361)
120 2ell_A Acidic leucine-rich nuc 99.5 2.9E-14 1E-18 116.4 9.4 135 228-364 24-165 (168)
121 2je0_A Acidic leucine-rich nuc 99.5 5.9E-14 2E-18 112.2 9.3 125 251-377 17-148 (149)
122 4b8c_D Glucose-repressible alc 99.5 7.5E-15 2.6E-19 147.4 3.7 119 196-316 216-334 (727)
123 3sb4_A Hypothetical leucine ri 99.5 2.9E-13 1E-17 123.2 12.9 258 24-304 43-327 (329)
124 3sb4_A Hypothetical leucine ri 99.5 2.6E-14 8.9E-19 130.2 5.7 55 179-234 100-154 (329)
125 2je0_A Acidic leucine-rich nuc 99.4 2E-13 6.8E-18 109.0 8.0 123 158-282 18-147 (149)
126 4b8c_D Glucose-repressible alc 99.4 4.5E-14 1.6E-18 141.7 4.6 155 240-400 213-369 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.4 3E-13 1E-17 111.3 8.6 129 249-381 17-152 (176)
128 1w8a_A SLIT protein; signaling 99.4 1.9E-12 6.4E-17 108.0 10.8 119 162-282 13-133 (192)
129 1a9n_A U2A', U2A'; complex (nu 99.4 6E-13 2E-17 109.5 5.9 129 228-359 19-153 (176)
130 4fs7_A Uncharacterized protein 99.3 1.9E-10 6.5E-15 107.4 21.4 312 17-378 59-375 (394)
131 4fdw_A Leucine rich hypothetic 99.3 1.4E-10 4.7E-15 108.0 20.3 109 17-146 124-236 (401)
132 1w8a_A SLIT protein; signaling 99.3 1E-11 3.5E-16 103.5 11.3 111 158-268 30-143 (192)
133 2wfh_A SLIT homolog 2 protein 99.3 1.3E-11 4.3E-16 103.0 11.4 107 158-264 32-139 (193)
134 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5.2E-16 102.5 11.3 125 161-311 14-139 (193)
135 1ds9_A Outer arm dynein; leuci 99.3 3.5E-14 1.2E-18 119.3 -5.4 125 223-375 43-180 (198)
136 2o6r_A Variable lymphocyte rec 99.3 2.4E-11 8.4E-16 99.9 11.6 61 181-241 29-89 (177)
137 2o6r_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 98.9 12.3 127 231-383 10-138 (177)
138 1ds9_A Outer arm dynein; leuci 99.3 7E-14 2.4E-18 117.5 -4.6 141 24-195 13-155 (198)
139 4fdw_A Leucine rich hypothetic 99.1 5.3E-09 1.8E-13 97.3 21.1 233 175-420 131-379 (401)
140 4fs7_A Uncharacterized protein 99.1 5.7E-09 2E-13 97.3 20.8 215 174-400 156-376 (394)
141 2r9u_A Variable lymphocyte rec 99.1 4.7E-10 1.6E-14 91.6 9.9 102 278-382 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.1 6.7E-10 2.3E-14 90.4 9.9 101 278-381 12-114 (170)
143 3g39_A Variable lymphocyte rec 99.1 7.1E-10 2.4E-14 90.3 9.9 106 159-266 11-117 (170)
144 2r9u_A Variable lymphocyte rec 99.1 7.3E-10 2.5E-14 90.5 9.8 104 160-265 15-119 (174)
145 4gt6_A Cell surface protein; l 99.0 4.7E-08 1.6E-12 91.1 22.2 128 245-379 259-388 (394)
146 3un9_A NLR family member X1; l 99.0 2.8E-11 9.7E-16 111.5 -0.4 38 322-359 210-252 (372)
147 3un9_A NLR family member X1; l 99.0 4.8E-11 1.6E-15 110.0 0.0 157 227-383 71-253 (372)
148 4gt6_A Cell surface protein; l 98.9 1E-07 3.6E-12 88.7 21.3 106 270-379 260-367 (394)
149 2ra8_A Uncharacterized protein 98.8 6.2E-09 2.1E-13 95.1 6.6 62 321-382 250-320 (362)
150 2ifg_A High affinity nerve gro 98.8 2.7E-08 9.3E-13 91.0 9.9 103 255-359 12-116 (347)
151 2ifg_A High affinity nerve gro 98.8 3.2E-08 1.1E-12 90.6 10.2 103 162-265 13-117 (347)
152 2ra8_A Uncharacterized protein 98.7 2.1E-08 7.2E-13 91.6 6.9 158 200-359 135-320 (362)
153 4h09_A Hypothetical leucine ri 98.7 4E-06 1.4E-10 77.5 21.8 150 176-331 190-341 (379)
154 4h09_A Hypothetical leucine ri 98.7 8.4E-06 2.9E-10 75.3 23.6 128 246-378 212-342 (379)
155 3e4g_A ATP synthase subunit S, 98.5 5.5E-08 1.9E-12 78.1 3.0 81 324-404 62-153 (176)
156 1io0_A Tropomodulin; LRR prote 98.4 1.2E-07 4E-12 78.1 2.5 59 323-381 93-163 (185)
157 1io0_A Tropomodulin; LRR prote 98.2 4.2E-07 1.4E-11 74.8 2.1 92 173-264 29-136 (185)
158 3e4g_A ATP synthase subunit S, 98.2 2.5E-06 8.7E-11 68.4 6.4 84 299-384 62-154 (176)
159 3rw6_A Nuclear RNA export fact 97.9 1.2E-06 4.3E-11 75.7 -0.4 110 23-143 135-258 (267)
160 3rw6_A Nuclear RNA export fact 97.8 2.1E-05 7.2E-10 68.0 5.7 65 321-386 168-237 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0003 1E-08 57.4 2.3 36 324-359 71-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00053 1.8E-08 56.0 2.4 109 272-380 38-168 (197)
163 3rfe_A Platelet glycoprotein I 95.7 0.015 5.1E-07 44.1 5.3 34 347-380 32-66 (130)
164 3rfe_A Platelet glycoprotein I 95.2 0.038 1.3E-06 41.8 5.9 35 83-124 32-66 (130)
165 2lz0_A Uncharacterized protein 35.7 40 0.0014 23.5 3.8 38 175-213 15-52 (100)
166 2lz0_A Uncharacterized protein 31.3 69 0.0024 22.3 4.4 11 80-90 18-28 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.1e-42 Score=346.78 Aligned_cols=403 Identities=21% Similarity=0.266 Sum_probs=229.6
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchh---------------------hhcceeecC
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLP---------------------EKLRYLHWD 68 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~---------------------~~L~~L~l~ 68 (432)
+|+++|.+....+. +..+++|++|++++|++.+ .+|..+..++ .+|++|+++
T Consensus 205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~ 277 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG------DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277 (768)
T ss_dssp EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS------CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECC
T ss_pred EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC------cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECc
Confidence 34455544443333 5555555555555555543 3333344443 144444444
Q ss_pred CCCCC-CCCCCC-C-CCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC--CCCCCCceEEEe
Q 042875 69 TYPLR-ILPSNF-K-PKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--NLHFVCPVTINF 143 (432)
Q Consensus 69 ~~~~~-~l~~~~-~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l 143 (432)
+|.++ .+|..+ . +++|++|++++|.++. . +|..++.+++|++|++++|...+.+|. +..+++|++|++
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~----~---~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYG----A---VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEE----C---CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCC----c---cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 44443 444443 2 3566666666666552 2 566677777777777777766655552 555666777777
Q ss_pred cCcccccccCCCC------------------------------CCccEEEecccccc-cccccccCCCCCCEEeeccccc
Q 042875 144 SYCVTLIEFPQIS------------------------------GKITRLYLDQSAIE-EVPSSIECLTDLEVLDLRDCKR 192 (432)
Q Consensus 144 ~~~~~~~~~~~~~------------------------------~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 192 (432)
++|.+.+.+|..+ .+++.|++.+|.+. .+|..+..+++|+.|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 6666554444322 23444444444443 3444555566666666666655
Q ss_pred cccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEEeecCCCCCCcccccc
Q 042875 193 LKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNI 271 (432)
Q Consensus 193 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 271 (432)
.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|.++
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 5555555666666666666666555556666666666666666666666 455556666666666666666666666666
Q ss_pred CCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhh-------------------------------
Q 042875 272 GNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLL------------------------------- 319 (432)
Q Consensus 272 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------------- 319 (432)
..+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|...+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 66666666666666665 5566666666666666666655444443221
Q ss_pred --------------------------------------cCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-
Q 042875 320 --------------------------------------LGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE- 359 (432)
Q Consensus 320 --------------------------------------~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~- 359 (432)
..++.|+.|++++|.++. +|..++.+++|+.|++++|.++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 113456666666666654 6666666666666666666666
Q ss_pred ccChhccCCCCCCeeeccCCCCCcccCCC---CCCccEEeccCCCCccccCC--CCCccceecccccccccc
Q 042875 360 SLPASIKQLSRLCSLDLRRCNMLQSLPAL---PLCLKYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQS 426 (432)
Q Consensus 360 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~ 426 (432)
.+|..++.+++|+.|++++|++.+.+|.. +++|++|++++|+.-..+|. .+..+....+.+++.+..
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 56666666666666666666666666633 24566666666554445554 233444455555555543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-41 Score=344.66 Aligned_cols=364 Identities=21% Similarity=0.277 Sum_probs=289.6
Q ss_pred ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCCC--CCCCCceeeeeccccccccCCCccccc
Q 042875 29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPSN--FKPKNLVELNLRFSKVEQPWEGEKACV 105 (432)
Q Consensus 29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~ 105 (432)
++|++|++++|++.+ .+|..+..++ +|++|++++|.+. .+|.. .++++|++|++++|.++ +. +
T Consensus 294 ~~L~~L~Ls~n~l~~------~~p~~~~~l~-~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~----~~---~ 359 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYG------AVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS----GE---L 359 (768)
T ss_dssp TTCSEEECCSSEEEE------CCCGGGGGCT-TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE----EC---C
T ss_pred CcCCEEECcCCcCCC------ccchHHhcCC-CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC----cc---c
Confidence 444444444444443 3444444443 5555555555443 44432 24555555555555554 22 5
Q ss_pred CCcccCcc-cCceEeccCCccCCcCCC-CCC--CCCceEEEecCcccccccCCC---CCCccEEEecccccc-ccccccc
Q 042875 106 PSSIQNFK-YLSALSFEGCKSLRSFPS-NLH--FVCPVTINFSYCVTLIEFPQI---SGKITRLYLDQSAIE-EVPSSIE 177 (432)
Q Consensus 106 ~~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~~~~~~~ 177 (432)
|..+..++ +|+.|++++|...+.++. +.. +++|++|++++|.+...+|.. +++|+.|++.+|.+. .+|..+.
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 55666665 677777777766655552 333 678999999999888777754 468999999999986 6788999
Q ss_pred CCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEE
Q 042875 178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEEL 256 (432)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L 256 (432)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 9999999999999999899999999999999999999999899999999999999999999999 788899999999999
Q ss_pred eecCCCCCCccccccCCccccccccccccccc-ccCcc------------------------------------------
Q 042875 257 FVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSS------------------------------------------ 293 (432)
Q Consensus 257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~------------------------------------------ 293 (432)
++++|.+.+.+|..+..+++|+.|++++|.+. .+|..
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999775 44432
Q ss_pred ----------------------------ccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-Cchhhhc
Q 042875 294 ----------------------------VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAY 344 (432)
Q Consensus 294 ----------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~ 344 (432)
++.+++|+.|++++|.+.+.+|.. +..++.|+.|++++|.++. +|..++.
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChHHhC
Confidence 334577899999999988888876 5589999999999999996 9999999
Q ss_pred CCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccccC
Q 042875 345 LSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRSLP 407 (432)
Q Consensus 345 ~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~ 407 (432)
+++|+.|++++|+++ .+|..+..+++|++|++++|++.+.+|. .+..+....+.+|+.+-..|
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 999999999999999 8999999999999999999999999995 34567777788888775443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-41 Score=332.35 Aligned_cols=413 Identities=15% Similarity=0.152 Sum_probs=325.2
Q ss_pred eEeeccCCceecccCchhhcccccceeeeeccccccccccc---------------------------cccCCccccchh
Q 042875 7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERF---------------------------PMQLPNGLEYLP 59 (432)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~---------------------------~~~~~~~l~~l~ 59 (432)
-..+|++++.+....|.+++++++|++|++++|.+...... ....+..+..+.
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence 34577788887777778999999999999999976210000 001111111110
Q ss_pred h------------------hcceeecC--CCCCCCCCCCC-CCCCceeeeeccccccccCCC--c-cc-------ccCCc
Q 042875 60 E------------------KLRYLHWD--TYPLRILPSNF-KPKNLVELNLRFSKVEQPWEG--E-KA-------CVPSS 108 (432)
Q Consensus 60 ~------------------~L~~L~l~--~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~--~-~~-------~~~~~ 108 (432)
. .++.+.+. .|.++.+|..+ ++++|++|++++|.++..... - .. .+|..
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~ 242 (636)
T 4eco_A 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242 (636)
T ss_dssp HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence 1 12222222 34555577765 889999999999998751000 0 00 06777
Q ss_pred cc--CcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcc-ccc-ccCCCC---------CCccEEEecccccccccc
Q 042875 109 IQ--NFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCV-TLI-EFPQIS---------GKITRLYLDQSAIEEVPS 174 (432)
Q Consensus 109 ~~--~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~-~~~~~~---------~~L~~L~l~~~~~~~~~~ 174 (432)
++ ++++|++|++++|...+.+| .+.++++|++|++++|. +.+ .+|..+ .+|+.|++.+|.+..+|.
T Consensus 243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 78 99999999999999888888 56679999999999998 665 566432 789999999999999998
Q ss_pred --cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCC-CCeeeeccccccccCcccCCCC
Q 042875 175 --SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEH-LKRINLDGTAITELPSSFENLP 251 (432)
Q Consensus 175 --~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~ 251 (432)
.++.+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..++
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~ 400 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTC
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcc
Confidence 89999999999999999887888 7888999999999998776 78888889999 9999999999998888777655
Q ss_pred --CccEEeecCCCCCCccccccC-------CcccccccccccccccccCccc-cCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875 252 --GLEELFVSDCSKLDKLPDNIG-------NLESLRHISAAGSAISQLPSSV-ADSNALLILDFSRCKGLVSLPRSLLLG 321 (432)
Q Consensus 252 --~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (432)
+|+.|++++|.+.+..|..+. .+++|++|++++|.+..+|..+ ..+++|++|++++|.+. .++...+..
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~ 479 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD 479 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc
Confidence 899999999999888888777 7889999999999999887654 45899999999999866 666654433
Q ss_pred CC-------CccEEEeeccCCCCCchhhh--cCCCCCEEEeeCCCCcccChhccCCCCCCeeecc------CCCCCcccC
Q 042875 322 LS-------SLGLLYIMNCAVMEIPQEIA--YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLR------RCNMLQSLP 386 (432)
Q Consensus 322 ~~-------~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~------~~~~~~~~~ 386 (432)
.. +|+.|++++|.++.+|..+. .+++|+.|++++|+++.+|..+..+++|++|+++ +|++.+.+|
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 32 89999999999999998887 8999999999999999999999999999999995 466677777
Q ss_pred CC---CCCccEEeccCCCCccccCC-CCCccceeccccccc
Q 042875 387 AL---PLCLKYLHLTGCNMLRSLPE-LPLCLQELDATNCNR 423 (432)
Q Consensus 387 ~~---~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~ 423 (432)
.. +++|++|++++|.. +.+|. ..+.|++|++++|+.
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 43 47899999999764 88887 668899999999743
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.5e-39 Score=317.79 Aligned_cols=379 Identities=18% Similarity=0.195 Sum_probs=227.6
Q ss_pred EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC-CC-CCCCce
Q 042875 8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS-NF-KPKNLV 85 (432)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~-~~-~~~~L~ 85 (432)
..+|+++|.+..+.+.+|.++++|++|++++|++.+ ..|..+..++ +|++|++++|.++.++. .+ ++++|+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCcc-ccCeeeCCCCcccccChhhhccccccc
Confidence 356778888888888899999999999999998875 4566778886 89999999998875533 33 888899
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCCCCCCCCCceEEEecCcccccccCC---CCCCcc-
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFPSNLHFVCPVTINFSYCVTLIEFPQ---ISGKIT- 160 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~- 160 (432)
+|++++|.++.+ .+..++.+++|++|++++|...+ ..+....+++|++|++++|.+....+. .+.+++
T Consensus 109 ~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 109 HLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp EEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred EeeccccCcccC-------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 999998888753 23446788888888888877665 345566677777777777755432221 222233
Q ss_pred ----------------------------------------------------------------------------EEEe
Q 042875 161 ----------------------------------------------------------------------------RLYL 164 (432)
Q Consensus 161 ----------------------------------------------------------------------------~L~l 164 (432)
.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 3333
Q ss_pred cccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-c
Q 042875 165 DQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-E 242 (432)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~ 242 (432)
.++.+..++. .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 3333333332 2455566666666666543 44555566666666666666555444555556666666666665554 3
Q ss_pred cCc-ccCCCCCccEEeecCCCCCCcc--ccccCCcccccccccccccccc-cCccccCCCCCcEEeccCCCCCCCCchhh
Q 042875 243 LPS-SFENLPGLEELFVSDCSKLDKL--PDNIGNLESLRHISAAGSAISQ-LPSSVADSNALLILDFSRCKGLVSLPRSL 318 (432)
Q Consensus 243 ~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 318 (432)
++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.. .+..+..+++|++|++++|......+...
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 332 2555566666666665554433 4445555666666666665542 23445555666666666655444333333
Q ss_pred hcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcc--c--ChhccCCCCCCeeeccCCCCCcccCC---CCC
Q 042875 319 LLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFES--L--PASIKQLSRLCSLDLRRCNMLQSLPA---LPL 390 (432)
Q Consensus 319 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~--l--~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~ 390 (432)
+..+++|++|++++|.+.. .+..++.+++|++|++++|.++. + +..+..+++|++|++++|++.+..|. .++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 4455556666666665555 34445555666666666665542 1 13455555666666666555444332 224
Q ss_pred CccEEeccCCC
Q 042875 391 CLKYLHLTGCN 401 (432)
Q Consensus 391 ~L~~L~l~~c~ 401 (432)
+|++|++++|.
T Consensus 501 ~L~~L~Ls~N~ 511 (606)
T 3t6q_A 501 MMNHVDLSHNR 511 (606)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 55566665543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-39 Score=325.03 Aligned_cols=408 Identities=16% Similarity=0.181 Sum_probs=313.0
Q ss_pred eEeeccCCceecccCchhhcccccceeeee-cccccccccccc-ccC---------------------------------
Q 042875 7 GIFLDLSKIKCINLDPGAFTNMSNLRLLKF-YVPKFYEIERFP-MQL--------------------------------- 51 (432)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~i~~~~~~~-~~~--------------------------------- 51 (432)
-..|+++++.+....|.+|+++++|++|+| ++|.+.+..... ...
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 455788888888777889999999999999 888776520000 000
Q ss_pred -----------CccccchhhhcceeecCC--CCCCCCCCCC-CCCCceeeeeccccccccC-------------CCcccc
Q 042875 52 -----------PNGLEYLPEKLRYLHWDT--YPLRILPSNF-KPKNLVELNLRFSKVEQPW-------------EGEKAC 104 (432)
Q Consensus 52 -----------~~~l~~l~~~L~~L~l~~--~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~-------------~~~~~~ 104 (432)
+...... ..++.+.+.. |.++.+|..+ ++++|++|++++|.++... .+.
T Consensus 405 ~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~--- 480 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY--- 480 (876)
T ss_dssp HHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH---
T ss_pred HHHhhhCccccccccccc-cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc---
Confidence 0000001 0233333333 4455577765 8889999999999887510 002
Q ss_pred cCCccc--CcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcc-ccc-ccCC----------CCCCccEEEeccccc
Q 042875 105 VPSSIQ--NFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCV-TLI-EFPQ----------ISGKITRLYLDQSAI 169 (432)
Q Consensus 105 ~~~~~~--~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~-~~~~----------~~~~L~~L~l~~~~~ 169 (432)
+|..++ ++++|+.|++++|...+.+| .+.++++|+.|++++|. +.+ .+|. .+++|+.|++.+|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 677777 99999999999998888888 46678999999999997 555 4553 234899999999999
Q ss_pred ccccc--cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCC-CCeeeeccccccccCcc
Q 042875 170 EEVPS--SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEH-LKRINLDGTAITELPSS 246 (432)
Q Consensus 170 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~ 246 (432)
..+|. .+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++.+|..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 99988 8999999999999998876 667 7888999999999998876 78878888888 99999999999988877
Q ss_pred cCCCCC--ccEEeecCCCCCCccccc---cC--CcccccccccccccccccCcccc-CCCCCcEEeccCCCCCCCCchhh
Q 042875 247 FENLPG--LEELFVSDCSKLDKLPDN---IG--NLESLRHISAAGSAISQLPSSVA-DSNALLILDFSRCKGLVSLPRSL 318 (432)
Q Consensus 247 ~~~l~~--L~~L~l~~~~~~~~~~~~---~~--~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 318 (432)
+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+..+|..+. .+++|+.|++++|.+. .++...
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 766654 999999999887755432 22 34589999999999988887654 7889999999998755 666654
Q ss_pred hcCC-------CCccEEEeeccCCCCCchhhh--cCCCCCEEEeeCCCCcccChhccCCCCCCeeeccC------CCCCc
Q 042875 319 LLGL-------SSLGLLYIMNCAVMEIPQEIA--YLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRR------CNMLQ 383 (432)
Q Consensus 319 ~~~~-------~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~------~~~~~ 383 (432)
+... ++|+.|++++|.++.+|..+. .+++|+.|++++|.++.+|..+..+++|+.|++++ |++.+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc
Confidence 4332 389999999999999888886 88999999999999998898889999999999976 66666
Q ss_pred ccCCC---CCCccEEeccCCCCccccCC-CCCccceeccccccc
Q 042875 384 SLPAL---PLCLKYLHLTGCNMLRSLPE-LPLCLQELDATNCNR 423 (432)
Q Consensus 384 ~~~~~---~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~ 423 (432)
.+|.. +++|+.|++++|.. +.+|. ..++|+.|++++|+.
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 77743 46899999999764 88887 667899999999754
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-39 Score=319.66 Aligned_cols=168 Identities=18% Similarity=0.098 Sum_probs=120.5
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCcee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLVE 86 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~ 86 (432)
.+|+++|.+..+.+..|+++++|++|++++|++.+ ..+..+..++ +|++|++++|.++.+ |..+ ++++|++
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET------IEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccc------cCHHHhhchh-hcCEeECCCCcccccChhhcCCcccCCE
Confidence 46778888888888899999999999999999885 3456677886 999999999988877 5444 8899999
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCC------
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGK------ 158 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 158 (432)
|++++|.++.+ .+..++++++|++|++++|...+ .+| .+.++++|++|++++|.+....+..+..
T Consensus 109 L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 109 LVAVETKLASL-------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp EECTTSCCCCS-------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred EEccCCccccc-------cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 99999998753 23457889999999999987765 456 4667889999999988766544433321
Q ss_pred -ccEEEecccccccccccccCCCCCCEEeeccc
Q 042875 159 -ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDC 190 (432)
Q Consensus 159 -L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 190 (432)
+..+++.+|.+..++.......+|+.|++++|
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred ccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 22455555555444443333334444444443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-38 Score=314.19 Aligned_cols=406 Identities=17% Similarity=0.157 Sum_probs=301.8
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCC-CC-CCCCCceee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILP-SN-FKPKNLVEL 87 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L 87 (432)
+|+++|.+..+.+.+|.++++|++|++++|++.+ ..|..+..++ +|++|++++|.++.++ .. .++++|++|
T Consensus 62 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF------MAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE------ECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred EECCCCccceeChhhccCccccCeeeCCCCcccc------cChhhhcccc-cccEeeccccCcccCCcchhccCCcccEE
Confidence 5667777777777888888888888888888775 3455566664 6777777666666542 22 256666666
Q ss_pred eeccccccccCCCccc----------------c-cCCcccCcccCc--eEeccCCccCCcCCCCCCCC------------
Q 042875 88 NLRFSKVEQPWEGEKA----------------C-VPSSIQNFKYLS--ALSFEGCKSLRSFPSNLHFV------------ 136 (432)
Q Consensus 88 ~l~~~~l~~~~~~~~~----------------~-~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~------------ 136 (432)
++++|.++.+...... . .+..++.+++|+ .|++++|...+..+......
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence 6666665542111000 0 122344455555 45555554443333333222
Q ss_pred ----------------------------------------CceEEEecCcccccccC---CCCCCccEEEeccccccccc
Q 042875 137 ----------------------------------------CPVTINFSYCVTLIEFP---QISGKITRLYLDQSAIEEVP 173 (432)
Q Consensus 137 ----------------------------------------~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~ 173 (432)
+|+.|++++|.+....+ ..+++|+.|++.+|.+..+|
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp 294 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP 294 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC
Confidence 34445555544432222 23568999999999999999
Q ss_pred ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchH-hhhcCCCCCeeeecccccccc---CcccCC
Q 042875 174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPE-ILEKMEHLKRINLDGTAITEL---PSSFEN 249 (432)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~---~~~~~~ 249 (432)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+.++. .+..+++|++|++++|.++.. +..+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 9999999999999999998877788899999999999999987766554 488899999999999999854 667899
Q ss_pred CCCccEEeecCCCCCCccccccCCccccccccccccccccc--CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875 250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL--PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL 327 (432)
Q Consensus 250 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 327 (432)
+++|++|++++|.+.+..+..+..+++|++|++++|.+... +..+..+++|++|++++|......+. .+..+++|++
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 453 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQH 453 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCE
Confidence 99999999999988887788889999999999999998743 33488899999999999986554443 4567899999
Q ss_pred EEeeccCCCC--C--chhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCCC---CCCccEEeccC
Q 042875 328 LYIMNCAVME--I--PQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPAL---PLCLKYLHLTG 399 (432)
Q Consensus 328 L~l~~~~~~~--~--~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~ 399 (432)
|++++|.+.+ + +..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.+..|.. ...| .|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 9999999876 2 25688999999999999999955 678899999999999999988777644 3567 999999
Q ss_pred CCCccccCC----CCCccceeccccccccc
Q 042875 400 CNMLRSLPE----LPLCLQELDATNCNRLQ 425 (432)
Q Consensus 400 c~~l~~l~~----~~~~L~~L~l~~c~~l~ 425 (432)
|. ++.++. ..+.|++|+++++|...
T Consensus 533 N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 533 NH-ISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp SC-CCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred Cc-ccccCHhhcccCCCCCEEeCCCCCccc
Confidence 75 444443 35689999999987543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-38 Score=310.80 Aligned_cols=393 Identities=18% Similarity=0.160 Sum_probs=279.6
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVEL 87 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L 87 (432)
+|+++|.+..+.+.+|.++++|++|++++|++.+ ..|..+..++ +|++|++++|.++.++.. .++++|++|
T Consensus 61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS------FSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC------CCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred EeCCCCcccccCHHHhhchhhcCEeECCCCcccc------cChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEE
Confidence 6778888889988999999999999999999985 4477888886 999999999998877733 388999999
Q ss_pred eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC----------------------------CCCCCCce
Q 042875 88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS----------------------------NLHFVCPV 139 (432)
Q Consensus 88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------------------~~~~~~L~ 139 (432)
++++|.++.. . +|..++++++|++|++++|...+..+. .....+|+
T Consensus 134 ~L~~n~l~~~---~---lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 134 NVAHNFIHSC---K---LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp ECCSSCCCCC---C---CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred eCCCCcccce---e---chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 9999998742 3 677889999999999998866543221 11223567
Q ss_pred EEEecCccccc----------------------------------------------------------ccC--CCCCCc
Q 042875 140 TINFSYCVTLI----------------------------------------------------------EFP--QISGKI 159 (432)
Q Consensus 140 ~L~l~~~~~~~----------------------------------------------------------~~~--~~~~~L 159 (432)
+|++++|.... ..+ ..+.++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 77776664320 000 123456
Q ss_pred cEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA 239 (432)
Q Consensus 160 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (432)
+.|++.++.+..++ .+..+++|+.|++++|.+ +.+|. + .+++|+.|++++|...... .+..+++|++|++++|.
T Consensus 288 ~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 288 SAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp SEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred CEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence 66777777776666 677777888888888776 55563 4 7777777777777544433 34567777888887777
Q ss_pred cccc---CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC--ccccCCCCCcEEeccCCCCCCCC
Q 042875 240 ITEL---PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP--SSVADSNALLILDFSRCKGLVSL 314 (432)
Q Consensus 240 ~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~ 314 (432)
++.. +..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+...+ ..+..+++|++|++++|......
T Consensus 362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp EEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred cCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 7743 5667777788888887776443 4566777788888888887776443 35677778888888887755544
Q ss_pred chhhhcCCCCccEEEeeccCCCC--CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---C
Q 042875 315 PRSLLLGLSSLGLLYIMNCAVME--IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---L 388 (432)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~ 388 (432)
+. .+..+++|++|++++|.+.+ +|..++.+++|++|++++|+++.+ |..+..+++|++|++++|++.+..|. .
T Consensus 441 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 441 DG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp TT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred hh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 43 34567778888888887775 566677778888888888877744 55677788888888888877665553 3
Q ss_pred CCCccEEeccCCCCccccCC---CC-Cccceecccccccc
Q 042875 389 PLCLKYLHLTGCNMLRSLPE---LP-LCLQELDATNCNRL 424 (432)
Q Consensus 389 ~~~L~~L~l~~c~~l~~l~~---~~-~~L~~L~l~~c~~l 424 (432)
+++|++|++++|. ++.+|. .. ++|++|+++++|..
T Consensus 520 l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 520 LYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 3568888888764 556655 22 35788888776544
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=308.28 Aligned_cols=404 Identities=21% Similarity=0.165 Sum_probs=277.1
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC-CC-CCCCcee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS-NF-KPKNLVE 86 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~ 86 (432)
.+|+++|.+..+.+.+|.++++|++|++++|++.+ ..+..+..++ +|++|++++|.++.++. .+ ++++|++
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCc------cCcccccCch-hCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 46778888888888899999999999999999875 3345677786 99999999998887764 33 8889999
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCC---CCc--
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQIS---GKI-- 159 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L-- 159 (432)
|++++|.++.+.. ..++.+++|++|++++|.... .+| .+.++++|++|++++|.+....+..+ .++
T Consensus 105 L~L~~n~l~~l~~-------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 105 LVAVETNLASLEN-------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp EECTTSCCCCSTT-------CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccCCC-------ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 9999998875321 237888999999999887665 455 45668899999998887664433322 233
Q ss_pred --cEEEecccccccccccccCCCCCCEEeecccc----------------------------------------------
Q 042875 160 --TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCK---------------------------------------------- 191 (432)
Q Consensus 160 --~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------------------------------- 191 (432)
+.+++.+|.+..++.......+|+.+++++|.
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence 45555555554433322222234444433321
Q ss_pred ------------ccccccchhcCCCCccEEEecCccCcccchHhhh--------------------cCCCCCeeeecccc
Q 042875 192 ------------RLKRISTRFCKLRSLVDLFVNGCLNLERFPEILE--------------------KMEHLKRINLDGTA 239 (432)
Q Consensus 192 ------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--------------------~l~~L~~L~l~~~~ 239 (432)
..+..+..+..+++|+.|++++|.+. .+|..+. .+++|++++++++.
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCB
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCc
Confidence 11112223333444555555444332 2333333 34445555555444
Q ss_pred ccccCcccCCCCCccEEeecCCCCCCcc--ccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875 240 ITELPSSFENLPGLEELFVSDCSKLDKL--PDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS 317 (432)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (432)
+...... ..+++|+.|++++|.+.... +..+..+++|++|++++|.+..++..+..+++|++|++++|......+..
T Consensus 337 ~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 337 GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp SCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchh
Confidence 4422111 56677777777777655432 45566778888888888888766666888889999999888765555544
Q ss_pred hhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc--ccChhccCCCCCCeeeccCCCCCcccCC---CCCC
Q 042875 318 LLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE--SLPASIKQLSRLCSLDLRRCNMLQSLPA---LPLC 391 (432)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~ 391 (432)
.+..+++|+.|++++|.+.. .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|. .+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 56678899999999998887 6667888999999999999887 5888889999999999999988766564 3468
Q ss_pred ccEEeccCCCCccccCC----CCCccceeccccccccccCCC
Q 042875 392 LKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRLQSLPE 429 (432)
Q Consensus 392 L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~lp~ 429 (432)
|++|++++|. ++.++. .+++|++|++++++.-.+.|.
T Consensus 496 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999974 555543 467899999999776655554
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-36 Score=306.53 Aligned_cols=405 Identities=22% Similarity=0.214 Sum_probs=227.3
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC-C-CCCCcee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN-F-KPKNLVE 86 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~ 86 (432)
.+|+++|.+..+.+..|.++++|++|++++|++.+ ..+..+..++ +|++|++++|.++.++.. + ++++|++
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------LEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------CCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------cCHHHHhccc-CcCEEECCCCccCccChhhhccCCCCCE
Confidence 46778888888887888899999999999888875 4456677775 888888888888887763 3 7888888
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC-----CCCCcc
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ-----ISGKIT 160 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~L~ 160 (432)
|++++|.++.+ .+..++.+++|++|++++|...+..+ .+..+++|++|++++|.+....+. ...+|+
T Consensus 102 L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 102 LHLMSNSIQKI-------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp EECCSSCCCCC-------CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred EECCCCccCcc-------ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 88888887643 33457788888888888877665544 345677777777777765433221 124555
Q ss_pred EEEecccccccccc----------------------------------------------------cccCC--CCCCEEe
Q 042875 161 RLYLDQSAIEEVPS----------------------------------------------------SIECL--TDLEVLD 186 (432)
Q Consensus 161 ~L~l~~~~~~~~~~----------------------------------------------------~~~~~--~~L~~L~ 186 (432)
.|++.+|.+..++. .+..+ ++|+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 66665554433221 12112 1244444
Q ss_pred eccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc------ccCc----ccCCCCCccEE
Q 042875 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT------ELPS----SFENLPGLEEL 256 (432)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~~~~----~~~~l~~L~~L 256 (432)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++++++++... .+|. .+..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 4444433333334444444444444444443333333333333333333322111 1111 23334444444
Q ss_pred eecCCCCCCccccccCCcccccccccccc----------------------------cccc-cCccccCCCCCcEEeccC
Q 042875 257 FVSDCSKLDKLPDNIGNLESLRHISAAGS----------------------------AISQ-LPSSVADSNALLILDFSR 307 (432)
Q Consensus 257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~----------------------------~~~~-~~~~~~~~~~L~~L~l~~ 307 (432)
++++|.+.+..+..+..+++|++|++++| .+.. .+..+..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 44444444333333444444444444332 2221 123344455556666655
Q ss_pred CCCCCCCchhhhcCCCCccEEEeeccCCCC---------------------------CchhhhcCCCCCEEEeeCCCCcc
Q 042875 308 CKGLVSLPRSLLLGLSSLGLLYIMNCAVME---------------------------IPQEIAYLSSLKSLDLRGNNFES 360 (432)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------------------------~~~~~~~~~~L~~L~l~~n~l~~ 360 (432)
|...+.++...+..+++|++|++++|.+.. +|..+..+++|+.|++++|+++.
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 554443333333344444444444444322 45556666777777777777775
Q ss_pred cCh-hccCCCCCCeeeccCCCCCcccC-----------CCCCCccEEeccCCCCccccCC----CCCccceecccccccc
Q 042875 361 LPA-SIKQLSRLCSLDLRRCNMLQSLP-----------ALPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNCNRL 424 (432)
Q Consensus 361 l~~-~~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l 424 (432)
+++ .+..+++|++|++++|++.+..+ ..+++|++|++++| .++.+|. ..+.|++|++++ +++
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l 572 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNL 572 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCC
Confidence 543 35667777777777776543211 12356777777775 4555553 456788888876 577
Q ss_pred ccCCC
Q 042875 425 QSLPE 429 (432)
Q Consensus 425 ~~lp~ 429 (432)
+.+|+
T Consensus 573 ~~l~~ 577 (680)
T 1ziw_A 573 NTLPA 577 (680)
T ss_dssp CCCCT
T ss_pred CcCCH
Confidence 76664
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.9e-37 Score=300.14 Aligned_cols=402 Identities=18% Similarity=0.168 Sum_probs=247.3
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCcee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVE 86 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~ 86 (432)
.+|+++|.+..+.+..|.++++|++|++++|++.+ ..+..+..++ +|++|++++|.++.++.. .++++|++
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINT------IEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCc------cChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcE
Confidence 46778888888888889999999999999999885 4456677886 999999999988877764 38889999
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCcccccccCCCC---CCccE
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVTLIEFPQIS---GKITR 161 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~ 161 (432)
|++++|.++.+ . +|..++.+++|++|++++|...+.++ .+..+++|++|++++|.+....+..+ .+++.
T Consensus 103 L~Ls~n~l~~~---~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 103 LNLMGNPYQTL---G---VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp EECTTCCCSSS---C---SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred EECCCCccccc---c---hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 99999988742 2 45678899999999999987666665 56778999999999998877666544 46778
Q ss_pred EEecccccccccccc-cCCCCCCEEeeccccccccc--c-chhcCCCCccEEEecCccCcccch----HhhhcCCCCCee
Q 042875 162 LYLDQSAIEEVPSSI-ECLTDLEVLDLRDCKRLKRI--S-TRFCKLRSLVDLFVNGCLNLERFP----EILEKMEHLKRI 233 (432)
Q Consensus 162 L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L 233 (432)
|++..+....++..+ ..+++|+.|++++|.+.+.. + .....+++|+.|++.++.+.+..+ ..+..+++++.+
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 888888877766644 46888999999988776531 1 223446788888888876654433 233556778888
Q ss_pred eeccccccccC-------cccCCCCCccEEeecCCCCC----------------------------Ccccccc-CCcccc
Q 042875 234 NLDGTAITELP-------SSFENLPGLEELFVSDCSKL----------------------------DKLPDNI-GNLESL 277 (432)
Q Consensus 234 ~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~----------------------------~~~~~~~-~~l~~L 277 (432)
+++++.+..++ ..+..+++++.+.+.++.+. ..+|..+ ..+++|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence 88777665321 12234445555555544322 1233222 234445
Q ss_pred cccccccccccc-c---CccccCCCCCcEEeccCCCCCCCCc-hhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEE
Q 042875 278 RHISAAGSAISQ-L---PSSVADSNALLILDFSRCKGLVSLP-RSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLD 352 (432)
Q Consensus 278 ~~L~l~~~~~~~-~---~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 352 (432)
++|++++|.+.. + +..++.+++|++|++++|.+.+..+ ...+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEE
Confidence 555555444431 1 1123344445555555444322110 1123344445555555555444444444444555555
Q ss_pred eeCCCCcccChhccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCCccccCC--CCCccceeccccccccccCC
Q 042875 353 LRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQSLP 428 (432)
Q Consensus 353 l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~lp 428 (432)
+++|+++.+|..+ .++|++|++++|++.+ ++..+++|++|++++| .++.+|. ..+.|+.|+++++ +++.+|
T Consensus 417 Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 417 LSSTGIRVVKTCI--PQTLEVLDVSNNNLDS-FSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp CTTSCCSCCCTTS--CTTCSEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCC
T ss_pred CCCCCcccccchh--cCCceEEECCCCChhh-hcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcC
Confidence 5555544444322 2345555555554332 2233445666666664 3445554 3455666666663 454443
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-35 Score=298.54 Aligned_cols=401 Identities=20% Similarity=0.209 Sum_probs=258.1
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCc-cccchhhhcceeecCCCCCCCCCCC-C-CCCCce
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPN-GLEYLPEKLRYLHWDTYPLRILPSN-F-KPKNLV 85 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~l~~l~~~L~~L~l~~~~~~~l~~~-~-~~~~L~ 85 (432)
.+|+++|.+..+.+..|.++++|++|++++|++. .+|. .+..++ +|++|++++|.++.++.. + ++++|+
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-------QLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-------CCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccC-------ccChhhhccCC-CCCEEECCCCccCccChhHccccCCCC
Confidence 3667888888888888999999999999999887 3454 467775 888999988888777643 3 788888
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC---CCCCCCceEEEecCc----------------
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS---NLHFVCPVTINFSYC---------------- 146 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~---------------- 146 (432)
+|++++|.++.. .+..+.++++|++|++++|...+..+. ...+++|++|++++|
T Consensus 125 ~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 125 TLDLSHNGLSST-------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp EEECCSSCCSCC-------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred EEECCCCccccc-------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 888888887643 344456666777777766654332221 122344444444444
Q ss_pred -----------------------------------ccccccCCCC-----CCccEEEeccccccccc-ccccCCCCCCEE
Q 042875 147 -----------------------------------VTLIEFPQIS-----GKITRLYLDQSAIEEVP-SSIECLTDLEVL 185 (432)
Q Consensus 147 -----------------------------------~~~~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 185 (432)
.+....+..+ .+|+.|++++|.+..++ ..++.+++|+.|
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence 3332222222 23888888888876654 467888889999
Q ss_pred eeccccccccccchhcCCCCccEEEecCccCcc-----cch----HhhhcCCCCCeeeeccccccccC-cccCCCCCccE
Q 042875 186 DLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE-----RFP----EILEKMEHLKRINLDGTAITELP-SSFENLPGLEE 255 (432)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~----~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~ 255 (432)
++++|.+.+..+..+..+++|+.|+++++.... .+| ..+..+++|++|++++|.++.++ ..+..+++|++
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp ECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred eCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence 998887766666556666666666665432221 111 13334445555555544444222 22333333333
Q ss_pred Eeec----------------------------CCCCCCccccccCCccccccccccccccc-ccC-ccccCCCCCcEEec
Q 042875 256 LFVS----------------------------DCSKLDKLPDNIGNLESLRHISAAGSAIS-QLP-SSVADSNALLILDF 305 (432)
Q Consensus 256 L~l~----------------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~-~~~~~~~~L~~L~l 305 (432)
|+++ +|.+.+..+..+..+++|+.|++++|.+. .++ ..+..+++|++|++
T Consensus 358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 3333 33333333444555566666666666554 232 34444555555555
Q ss_pred cCCC------------------------CC--CCCchhhhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCC
Q 042875 306 SRCK------------------------GL--VSLPRSLLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNF 358 (432)
Q Consensus 306 ~~~~------------------------~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l 358 (432)
++|. .. +..+. .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 5443 22 12222 35578899999999999999654 578999999999999999
Q ss_pred cccCh---------hccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCCCccccCC----CCCccceeccccc
Q 042875 359 ESLPA---------SIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNC 421 (432)
Q Consensus 359 ~~l~~---------~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c 421 (432)
+.++. .+..+++|++|++++|++. .+|. .+++|+.|++++| .++.+|. ..++|++|+++++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 86532 3688999999999999876 5552 3478999999885 5777775 4578999999995
Q ss_pred cccccCC
Q 042875 422 NRLQSLP 428 (432)
Q Consensus 422 ~~l~~lp 428 (432)
+++.+|
T Consensus 595 -~l~~~~ 600 (680)
T 1ziw_A 595 -LITSVE 600 (680)
T ss_dssp -CCCBCC
T ss_pred -cCCccC
Confidence 787765
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-37 Score=307.92 Aligned_cols=380 Identities=16% Similarity=0.196 Sum_probs=311.9
Q ss_pred ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCC----------------------------
Q 042875 29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFK---------------------------- 80 (432)
Q Consensus 29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~---------------------------- 80 (432)
.+++.|+|+++.+.+ .+|..++.++ +|++|++++|.+..-+..+.
T Consensus 81 ~~V~~L~L~~~~l~g------~lp~~l~~L~-~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFGASG------RVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTSCCEE------EECGGGGGCT-TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCC
T ss_pred CCEEEEEecCcccCC------cCChHHhcCc-cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccC
Confidence 589999999999988 8899999996 99999999996521111110
Q ss_pred --------------------------CCCceeeeec--cccccccCCCcccccCCcccCcccCceEeccCCccCCc----
Q 042875 81 --------------------------PKNLVELNLR--FSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS---- 128 (432)
Q Consensus 81 --------------------------~~~L~~L~l~--~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---- 128 (432)
...++.+.+. .|.++. +|..++++++|++|++++|.+.+.
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~--------ip~~l~~l~~L~~L~Ls~n~l~~~~~~~ 225 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--------VSKAVMRLTKLRQFYMGNSPFVAENICE 225 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--------ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc--------CCHHHhcccCCCEEECcCCccccccccc
Confidence 0111222221 233332 788899999999999999998774
Q ss_pred -------------CC-CCC--CCCCceEEEecCcccccccCCCC---CCccEEEecccc-cc--cccccccCC------C
Q 042875 129 -------------FP-SNL--HFVCPVTINFSYCVTLIEFPQIS---GKITRLYLDQSA-IE--EVPSSIECL------T 180 (432)
Q Consensus 129 -------------~~-~~~--~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~-~~--~~~~~~~~~------~ 180 (432)
+| .+. ++++|++|++++|.+.+.+|..+ ++|+.|++.+|. +. .+|..++.+ +
T Consensus 226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 77 455 79999999999999988888654 588999999998 76 488877765 9
Q ss_pred CCCEEeeccccccccccc--hhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCC-ccEEe
Q 042875 181 DLEVLDLRDCKRLKRIST--RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPG-LEELF 257 (432)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~ 257 (432)
+|++|++++|.+. .+|. .+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++.+|..+..+++ |++|+
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 9999999999887 7887 89999999999999999887888 888999999999999999999999999999 99999
Q ss_pred ecCCCCCCccccccCCcc--ccccccccccccc-ccCcccc-------CCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875 258 VSDCSKLDKLPDNIGNLE--SLRHISAAGSAIS-QLPSSVA-------DSNALLILDFSRCKGLVSLPRSLLLGLSSLGL 327 (432)
Q Consensus 258 l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 327 (432)
+++|.+. .+|..+..+. +|++|++++|.+. ..|..+. .+++|++|++++|.+. .++...+..+++|+.
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS 461 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence 9999877 7887776654 8999999999997 4556666 6789999999999866 677777778999999
Q ss_pred EEeeccCCCCCchhhhc--------CCCCCEEEeeCCCCcccChhcc--CCCCCCeeeccCCCCCcccCC---CCCCccE
Q 042875 328 LYIMNCAVMEIPQEIAY--------LSSLKSLDLRGNNFESLPASIK--QLSRLCSLDLRRCNMLQSLPA---LPLCLKY 394 (432)
Q Consensus 328 L~l~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~---~~~~L~~ 394 (432)
|++++|.++.+|..... +++|+.|++++|+++.+|..+. .+++|++|++++|++.+ +|. .+++|+.
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~ 540 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence 99999999988765433 2299999999999999999887 99999999999999876 774 3478999
Q ss_pred EeccC------CCCccccCC---CCCccceeccccccccccCCC
Q 042875 395 LHLTG------CNMLRSLPE---LPLCLQELDATNCNRLQSLPE 429 (432)
Q Consensus 395 L~l~~------c~~l~~l~~---~~~~L~~L~l~~c~~l~~lp~ 429 (432)
|++++ |.....+|. .+++|++|++++| +++.+|.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~ 583 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE 583 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCH
Confidence 99965 444455665 5678999999995 6688876
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=294.51 Aligned_cols=371 Identities=18% Similarity=0.182 Sum_probs=245.2
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELN 88 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~ 88 (432)
.+|+++|.+..+.+..|.++++|++|++++|++.+ ..|..+..++ +|++|++++|.++.+|.. .+++|++|+
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~ 96 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLD 96 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEE
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCC------cChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEe
Confidence 46778888888888899999999999999999885 4466788886 999999999999888887 889999999
Q ss_pred eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCc--eEEEecCccc--ccccCCCCCC------
Q 042875 89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP--VTINFSYCVT--LIEFPQISGK------ 158 (432)
Q Consensus 89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~------ 158 (432)
+++|.++.+ . +|..++.+++|++|++++|...+ ..+..+++| ++|++++|.+ ....+..++.
T Consensus 97 L~~N~l~~~---~---~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 97 LSFNAFDAL---P---ICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CCSSCCSSC---C---CCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred ccCCccccc---c---chhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 999998752 2 56778999999999999987654 234456666 8999988877 4444433333
Q ss_pred -----------------------ccEEEecccc-------cccccccccCCCCCCEEeecc-------------------
Q 042875 159 -----------------------ITRLYLDQSA-------IEEVPSSIECLTDLEVLDLRD------------------- 189 (432)
Q Consensus 159 -----------------------L~~L~l~~~~-------~~~~~~~~~~~~~L~~L~l~~------------------- 189 (432)
++.+++.+|. +......++.+++|+.|++++
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 3333444332 111111334444444444444
Q ss_pred --------ccccccccchh-----cCCCCccEEEecCccCcccch-HhhhcC---CCCCeeeeccccccccCcccCCCCC
Q 042875 190 --------CKRLKRISTRF-----CKLRSLVDLFVNGCLNLERFP-EILEKM---EHLKRINLDGTAITELPSSFENLPG 252 (432)
Q Consensus 190 --------~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~l---~~L~~L~l~~~~~~~~~~~~~~l~~ 252 (432)
|.+.+.+|..+ ..+++|+.++++++.+ .+| ..+..+ .+++.|+++++.+...+. ...+++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~ 325 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISP 325 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCc
Confidence 33333333333 3444444444444333 222 222222 445666666655553321 256677
Q ss_pred ccEEeecCCCCCCccccccCCcccccccccccccccc---cCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875 253 LEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ---LPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY 329 (432)
Q Consensus 253 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (432)
|++|++++|.+.+..|..+..+++|++|++++|.+.. ++..+..+++|++|++++|...+.++...+..+++|++|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 7788888777777677777777778888887777763 3455677777888888777766556655555667788888
Q ss_pred eeccCCCC-CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCC
Q 042875 330 IMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCN 401 (432)
Q Consensus 330 l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~ 401 (432)
+++|.++. +|..+. ++|+.|++++|+++.+|..+..+++|++|++++|++. .+|. .+++|++|++.+|+
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 88777765 443332 6777888888877777777777778888888877654 4443 23567777777765
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-36 Score=305.49 Aligned_cols=402 Identities=21% Similarity=0.202 Sum_probs=224.4
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccC-CccccchhhhcceeecCCCCCCCC-CCCC-CCCCce
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQL-PNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLV 85 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~-~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~ 85 (432)
.||+++|.+..+.+.+|.++++|++|++++|...+ .+ +..+..++ +|++|++++|.++.+ |..+ ++++|+
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~------~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL------TIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC------EECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCcc------ccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccC
Confidence 36678888888888888899999999998885443 44 56677886 899999998888755 4444 888899
Q ss_pred eeeeccccccccCCCcccccCC--cccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCcccccccCCCC-----
Q 042875 86 ELNLRFSKVEQPWEGEKACVPS--SIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYCVTLIEFPQIS----- 156 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~----- 156 (432)
+|++++|.++.. ++. .+.++++|++|++++|...+..+ .+.++++|++|++++|.+....+..+
T Consensus 101 ~L~Ls~n~l~~~-------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 101 ELRLYFCGLSDA-------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CEECTTCCCSSC-------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred EeeCcCCCCCcc-------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 999998888742 333 37888888888888887765433 46678888888888887665444322
Q ss_pred CCccEEEeccccccc-ccccccCCCC------CCEEeeccccccccccchh-----------------------------
Q 042875 157 GKITRLYLDQSAIEE-VPSSIECLTD------LEVLDLRDCKRLKRISTRF----------------------------- 200 (432)
Q Consensus 157 ~~L~~L~l~~~~~~~-~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~----------------------------- 200 (432)
.+|+.|++..|.+.. .+..++.++. |+.|++++|.+....+..+
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 455666666655432 2223333332 5566665553322211111
Q ss_pred -------cC--CCCccEEEecCccCcccchHhhhcCCCCCeeeecccccccc-CcccCCCCCccEEeecCCCCCCccccc
Q 042875 201 -------CK--LRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDN 270 (432)
Q Consensus 201 -------~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~ 270 (432)
.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+.+..+..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 01 13455555555554444444455555555555555555533 334455555555555555554444445
Q ss_pred cCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCC------------------CCc----------------
Q 042875 271 IGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLV------------------SLP---------------- 315 (432)
Q Consensus 271 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~------------------~~~---------------- 315 (432)
+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.. .++
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 5555555555555555543332 34445555555555544221 111
Q ss_pred -----hhhhcCCCCccEEEeeccCCCCCch--hhhcCCCCCEEEeeCCCCccc------ChhccCCCCCCeeeccCCCCC
Q 042875 316 -----RSLLLGLSSLGLLYIMNCAVMEIPQ--EIAYLSSLKSLDLRGNNFESL------PASIKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 316 -----~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l------~~~~~~l~~L~~L~l~~~~~~ 382 (432)
...+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+.
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 0112244555555555555554221 123344555555555544311 123444555555555555544
Q ss_pred cccCC---CCCCccEEeccCCCCccccCC--CCCccceecccccccccc
Q 042875 383 QSLPA---LPLCLKYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQS 426 (432)
Q Consensus 383 ~~~~~---~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~ 426 (432)
+..+. .+++|+.|++++| .++.++. ..++|+.|++++ ++++.
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~-N~l~~ 540 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR-NQLLA 540 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEE-ECCCC
T ss_pred ccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCC-CcCCC
Confidence 33332 2245666666664 3444443 335566666665 34433
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=292.82 Aligned_cols=395 Identities=17% Similarity=0.147 Sum_probs=275.8
Q ss_pred EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCce
Q 042875 8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLV 85 (432)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~ 85 (432)
-.+|++++.+..++. .+. ++|++|++++|++.+ ..+..+..++ +|++|++++|.++.+ |..+ ++++|+
T Consensus 3 ~~l~ls~n~l~~ip~-~~~--~~L~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK-DLS--QKTTILNISQNYISE------LWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCC-SCC--TTCSEEECCSSCCCC------CCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCcccccc-ccc--ccccEEECCCCcccc------cChhhccccc-cccEEecCCCccCCcChHHhhcccCCC
Confidence 468899998887764 444 899999999999985 3345778886 999999999999877 4344 899999
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCCc--cE
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGKI--TR 161 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L--~~ 161 (432)
+|++++|.++. +|.. .+++|++|++++|...+ .+| .+..+++|++|++++|.+.......+.++ +.
T Consensus 73 ~L~Ls~N~l~~--------lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 73 YLDLSHNKLVK--------ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142 (520)
T ss_dssp EEECCSSCCCE--------EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEE
T ss_pred EEecCCCceee--------cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeE
Confidence 99999999875 5555 89999999999998876 465 56779999999999998876555566777 99
Q ss_pred EEeccccc---cccccccc--------------------------CCCCCCEEeecccc-------ccccccchhcCCCC
Q 042875 162 LYLDQSAI---EEVPSSIE--------------------------CLTDLEVLDLRDCK-------RLKRISTRFCKLRS 205 (432)
Q Consensus 162 L~l~~~~~---~~~~~~~~--------------------------~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~ 205 (432)
|++.+|.+ ...|..+. .+++|+.+++++|. +.+.++ .+..+++
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~ 221 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK 221 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence 99999877 23333333 36667777777765 333333 5677788
Q ss_pred ccEEEecCccCcccchHhhh---cCCCCCeeeecccccc-ccCccc-----CCCCCccEEeecCCCCCCccc-cccCCc-
Q 042875 206 LVDLFVNGCLNLERFPEILE---KMEHLKRINLDGTAIT-ELPSSF-----ENLPGLEELFVSDCSKLDKLP-DNIGNL- 274 (432)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~-~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~~l- 274 (432)
|+.|++.++.+.+..+..+. ..++|++|++++|.++ .+|..+ ..+++|+.+++++|.+ .+| ..+..+
T Consensus 222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~ 299 (520)
T 2z7x_B 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIF 299 (520)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccc
Confidence 88888877765543222211 2468888888888888 677776 7788888888887766 444 222222
Q ss_pred --ccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC---CchhhhcCCCCC
Q 042875 275 --ESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME---IPQEIAYLSSLK 349 (432)
Q Consensus 275 --~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~ 349 (432)
.+|+.|++++|.+...+. ...+++|++|++++|...+..+.. +..+++|+.|++++|.+.. +|..++.+++|+
T Consensus 300 ~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 300 SNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377 (520)
T ss_dssp HTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC
T ss_pred ccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCC
Confidence 456677777666553321 246677777777777655544433 3466777777777777775 345566777777
Q ss_pred EEEeeCCCCcc-cChh-ccCCCCCCeeeccCCCCCcccCCCC-CCccEEeccCCCCccccCC---CCCccceeccccccc
Q 042875 350 SLDLRGNNFES-LPAS-IKQLSRLCSLDLRRCNMLQSLPALP-LCLKYLHLTGCNMLRSLPE---LPLCLQELDATNCNR 423 (432)
Q Consensus 350 ~L~l~~n~l~~-l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~ 423 (432)
+|++++|.++. +|.. +..+++|++|++++|++.+.++... ++|+.|++++| .++.+|. ..++|++|++++| +
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~ 455 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-Q 455 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-C
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-c
Confidence 77777777774 6653 5666777777777777666555433 56777777775 3555554 4556777777774 5
Q ss_pred cccCCC
Q 042875 424 LQSLPE 429 (432)
Q Consensus 424 l~~lp~ 429 (432)
++.+|+
T Consensus 456 l~~l~~ 461 (520)
T 2z7x_B 456 LKSVPD 461 (520)
T ss_dssp CCCCCT
T ss_pred CCccCH
Confidence 666654
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=305.36 Aligned_cols=398 Identities=21% Similarity=0.202 Sum_probs=254.0
Q ss_pred eccCCc-eecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCC-CCC---CCCCCCc
Q 042875 10 LDLSKI-KCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRI-LPS---NFKPKNL 84 (432)
Q Consensus 10 l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-l~~---~~~~~~L 84 (432)
||+++| ....+.+.+|.++++|++|+|++|++.+ ..|..+..++ +|++|++++|.++. ++. ..++++|
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~------~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF------LHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE------ECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc------cCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCC
Confidence 556666 3567778889999999999999999886 4577788886 99999999998764 333 2388899
Q ss_pred eeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CCCC--CC------------------------
Q 042875 85 VELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHF--VC------------------------ 137 (432)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~--~~------------------------ 137 (432)
++|++++|.++... .+..++++++|++|++++|.+....+. +..+ ++
T Consensus 126 ~~L~Ls~N~l~~~~------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 126 TRLDLSKNQIRSLY------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp CEEEEESCCCCCCC------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred CEEECCCCcccccc------cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 99999999887531 234578888888888888766543321 1111 33
Q ss_pred ------ceEEEecCcccccccCCC-----------------------------------------CCCccEEEecccccc
Q 042875 138 ------PVTINFSYCVTLIEFPQI-----------------------------------------SGKITRLYLDQSAIE 170 (432)
Q Consensus 138 ------L~~L~l~~~~~~~~~~~~-----------------------------------------~~~L~~L~l~~~~~~ 170 (432)
|+.|++++|.+....+.. ..+++.|++.+|.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 555555555332211110 123455555555444
Q ss_pred cc-cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccC
Q 042875 171 EV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFE 248 (432)
Q Consensus 171 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 248 (432)
.+ +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..++. .+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 33 2344555555555555555554444555555555555555555544444455555555555555555554332 345
Q ss_pred CCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc----------------------cccCCCCCcEEecc
Q 042875 249 NLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS----------------------SVADSNALLILDFS 306 (432)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~~L~~L~l~ 306 (432)
.+++|+.|++++|.+.. +..+++|+.+++++|.+..++. .+..+++|+.|+++
T Consensus 360 ~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434 (844)
T ss_dssp SCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred CCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence 55556666665554332 1113333333333333332221 23467889999999
Q ss_pred CCCCCCCCchhhhcCCCCccEEEeeccCCCC------CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCC
Q 042875 307 RCKGLVSLPRSLLLGLSSLGLLYIMNCAVME------IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRC 379 (432)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~ 379 (432)
+|.+....+...+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.++.+++ .+..+++|++|++++|
T Consensus 435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 9986654333334467899999999998864 33457788999999999999986654 4688999999999999
Q ss_pred CCCcccCCC-CCCccEEeccCCCCccccCCCCCccceeccccccccc
Q 042875 380 NMLQSLPAL-PLCLKYLHLTGCNMLRSLPELPLCLQELDATNCNRLQ 425 (432)
Q Consensus 380 ~~~~~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~ 425 (432)
++.+..+.. .++|+.|++++|.--...|..+..|+.|++++.|...
T Consensus 515 ~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 515 RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCccc
Confidence 876544433 3689999999976555555677789999998866543
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-35 Score=296.69 Aligned_cols=379 Identities=15% Similarity=0.156 Sum_probs=305.4
Q ss_pred ccceeeeeccccccccccccccCCccccchhhhcceeec-CCCCCCCC-CCC----------------------------
Q 042875 29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHW-DTYPLRIL-PSN---------------------------- 78 (432)
Q Consensus 29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l-~~~~~~~l-~~~---------------------------- 78 (432)
.+++.|+|+++.+.+ .+|..++.++ +|++|+| ++|.+... +..
T Consensus 323 ~~V~~L~Ls~~~L~G------~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~ 395 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKG------RVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395 (876)
T ss_dssp SCEEEEECTTTCCEE------EECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred CCEEEEECccCCCCC------cCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence 579999999999998 8999999997 9999999 66643211 000
Q ss_pred ------------------------CCCCCceeeeecc--ccccccCCCcccccCCcccCcccCceEeccCCccCC-----
Q 042875 79 ------------------------FKPKNLVELNLRF--SKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR----- 127 (432)
Q Consensus 79 ------------------------~~~~~L~~L~l~~--~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----- 127 (432)
.....++.+.+.. |.++. +|..++++++|+.|++++|.+.+
T Consensus 396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--------IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~ 467 (876)
T 4ecn_A 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF--------ISKAIQRLTKLQIIYFANSPFTYDNIAV 467 (876)
T ss_dssp GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--------ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc--------hhHHHhcCCCCCEEECcCCcCCCCcccc
Confidence 0112233333332 44442 78889999999999999998877
Q ss_pred ------------cCCC-CC--CCCCceEEEecCcccccccCCC---CCCccEEEecccc-cc--cccccccCC-------
Q 042875 128 ------------SFPS-NL--HFVCPVTINFSYCVTLIEFPQI---SGKITRLYLDQSA-IE--EVPSSIECL------- 179 (432)
Q Consensus 128 ------------~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-~~--~~~~~~~~~------- 179 (432)
.+|. +. .+++|++|++++|.+.+.+|.. +++|+.|++++|. +. .+|..++.+
T Consensus 468 ~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547 (876)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred cccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence 2774 44 7999999999999988888864 4589999999997 76 477655544
Q ss_pred CCCCEEeeccccccccccc--hhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCC-ccEE
Q 042875 180 TDLEVLDLRDCKRLKRIST--RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPG-LEEL 256 (432)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L 256 (432)
++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.++.+|..+..+++ |+.|
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 59999999999887 7888 8999999999999999877 777 888999999999999999999988999999 9999
Q ss_pred eecCCCCCCccccccCCcc--cccccccccccccccCc----ccc--CCCCCcEEeccCCCCCCCCchhhhcCCCCccEE
Q 042875 257 FVSDCSKLDKLPDNIGNLE--SLRHISAAGSAISQLPS----SVA--DSNALLILDFSRCKGLVSLPRSLLLGLSSLGLL 328 (432)
Q Consensus 257 ~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 328 (432)
++++|.+. .+|..+..+. +|+.|++++|.+...++ .+. ..++|+.|++++|.+. .++...+..+++|+.|
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI 702 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence 99999877 7787776654 49999999999874322 222 3458999999999866 7787777788999999
Q ss_pred EeeccCCCCCchhhhc--------CCCCCEEEeeCCCCcccChhcc--CCCCCCeeeccCCCCCcccCC---CCCCccEE
Q 042875 329 YIMNCAVMEIPQEIAY--------LSSLKSLDLRGNNFESLPASIK--QLSRLCSLDLRRCNMLQSLPA---LPLCLKYL 395 (432)
Q Consensus 329 ~l~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~---~~~~L~~L 395 (432)
++++|.+..+|..+.. +++|+.|++++|+++.+|..+. .+++|+.|++++|++.+ +|. .+++|+.|
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred ECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 9999999998876543 2389999999999999999887 99999999999999766 664 34789999
Q ss_pred eccCC------CCccccCC---CCCccceeccccccccccCCC
Q 042875 396 HLTGC------NMLRSLPE---LPLCLQELDATNCNRLQSLPE 429 (432)
Q Consensus 396 ~l~~c------~~l~~l~~---~~~~L~~L~l~~c~~l~~lp~ 429 (432)
++++| .....+|. .+++|++|++++| +++.+|.
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~ 823 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDE 823 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCH
Confidence 99873 33445564 5778999999996 6688886
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=288.95 Aligned_cols=377 Identities=22% Similarity=0.213 Sum_probs=291.0
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC--CCCCCCcee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS--NFKPKNLVE 86 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~--~~~~~~L~~ 86 (432)
.+|+++|.+..+.+..|.++++|++|++++|++.+ ..+..+..++ +|++|++++|.++.++. ..++++|++
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCc------cCHhhhcCcc-ccccccccccccccCCCccccccccccE
Confidence 36778888888988999999999999999999985 3346677886 99999999999988876 348899999
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCC---------------------------Cc
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFV---------------------------CP 138 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~---------------------------~L 138 (432)
|++++|.++.+ . +|..++++++|++|++++|......+ .+..++ +|
T Consensus 129 L~L~~n~l~~~---~---lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L 202 (570)
T 2z63_A 129 LNVAHNLIQSF---K---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (570)
T ss_dssp EECCSSCCCCC---C---CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred EecCCCcccee---c---ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence 99999988742 2 57778899999999998876543222 111222 45
Q ss_pred eEEEecCccc----------------------------------------------------------ccccCC---CCC
Q 042875 139 VTINFSYCVT----------------------------------------------------------LIEFPQ---ISG 157 (432)
Q Consensus 139 ~~L~l~~~~~----------------------------------------------------------~~~~~~---~~~ 157 (432)
+.|++++|.. ....+. .++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 5555544310 011111 235
Q ss_pred CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237 (432)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (432)
+++.|++.++.+..+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++.+|......+. ..+++|++|++++
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 6777888888777777777777 8888888887655 4443 4678888898888876655543 6789999999999
Q ss_pred cccccc---CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC--ccccCCCCCcEEeccCCCCCC
Q 042875 238 TAITEL---PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP--SSVADSNALLILDFSRCKGLV 312 (432)
Q Consensus 238 ~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 312 (432)
|.++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+...+ ..+..+++|++|++++|....
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 998854 5677889999999999997665443 4788999999999999988543 367889999999999998655
Q ss_pred CCchhhhcCCCCccEEEeeccCCCC--CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC--
Q 042875 313 SLPRSLLLGLSSLGLLYIMNCAVME--IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA-- 387 (432)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-- 387 (432)
..+. .+..+++|++|++++|.+.. +|..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.+..+.
T Consensus 436 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 436 AFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp CCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 5443 45678999999999999873 888889999999999999999965 77889999999999999987666553
Q ss_pred -CCCCccEEeccCCCCcccc
Q 042875 388 -LPLCLKYLHLTGCNMLRSL 406 (432)
Q Consensus 388 -~~~~L~~L~l~~c~~l~~l 406 (432)
.+++|+.|++.+|+.-...
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCT
T ss_pred hcccCCcEEEecCCcccCCC
Confidence 3478999999998754433
No 20
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-34 Score=273.66 Aligned_cols=334 Identities=18% Similarity=0.169 Sum_probs=182.2
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhh-------------cceeecCCCCCCCCC
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEK-------------LRYLHWDTYPLRILP 76 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~-------------L~~L~l~~~~~~~l~ 76 (432)
+++++|.++.+ |.+++++++|++|++++|++.+ .+|..++.+. + +++|+++++.++.+|
T Consensus 16 L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~------~~p~~~~~l~-~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 16 PLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWER------NAPPGNGEQR-EMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHH------TSCTTSCCCH-HHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred hhcccCchhhC-ChhHhcccchhhhhccCCcccc------cCCcccccch-hcchhhhhhhhccCCCEEEecCCccccCC
Confidence 56677877554 5789999999999999999987 7787777664 4 477888888777776
Q ss_pred CCCCCCCceeeeeccccccccCCCccc--------ccCCcccCc-ccCceEeccCCccCCcCCCCCCCCCceEEEecCcc
Q 042875 77 SNFKPKNLVELNLRFSKVEQPWEGEKA--------CVPSSIQNF-KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCV 147 (432)
Q Consensus 77 ~~~~~~~L~~L~l~~~~l~~~~~~~~~--------~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 147 (432)
.. .++|++|++++|.++.+...... +-...+... ++|++|++++|...+ +|.+..+++|++|++++|.
T Consensus 88 ~~--~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 88 EL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp SC--CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred CC--cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc
Confidence 63 35677777777776642110000 000000011 456666666654443 5555556666666666665
Q ss_pred cccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcC
Q 042875 148 TLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKM 227 (432)
Q Consensus 148 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 227 (432)
+. .+|....+++.|++.+|.+..+| .++.+++|+.|++++|.+.+ ++.. .++|+.|++++|.+. .+| .+..+
T Consensus 165 l~-~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l 236 (454)
T 1jl5_A 165 LK-KLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNL 236 (454)
T ss_dssp CS-CCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTC
T ss_pred Cc-ccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCC
Confidence 44 24555556666666666666555 45666666666666665433 2221 235666666665444 444 25566
Q ss_pred CCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccC
Q 042875 228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSR 307 (432)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 307 (432)
++|++|++++|+++.+|.. +++|+.|++++|.+.+ +|.. +++|++|++++|.+..++.. .++|++|++++
T Consensus 237 ~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~ 306 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASS 306 (454)
T ss_dssp TTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCS
T ss_pred CCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcC
Confidence 6666666666666655432 3556666666665443 3322 25666666666665544321 14566666666
Q ss_pred CCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc
Q 042875 308 CKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~ 383 (432)
|.+.+ ++ ...++|+.|++++|.+.++|.. +++|+.|++++|.++.+|. .+++|++|++++|++.+
T Consensus 307 N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 307 NEIRS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SCCSE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred CcCCc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc
Confidence 65432 11 1124666777777666665543 4666777777776666665 35667777777666544
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-34 Score=284.16 Aligned_cols=392 Identities=18% Similarity=0.214 Sum_probs=268.9
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC--CCCC-CCCCce
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL--PSNF-KPKNLV 85 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l--~~~~-~~~~L~ 85 (432)
.+++++|.+..+.+.+|.++++|++|++++|++.+ ..+..++.++ +|++|++++|.++.+ +..+ ++++|+
T Consensus 54 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 54 VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS------LSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS------CCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred EEECCCCCcCccChhhccccccCCEEECCCCccCc------cCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCcc
Confidence 36778998999998999999999999999999985 3334478886 999999999998754 4444 899999
Q ss_pred eeeecccc-ccccCCCcccccC-CcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccC----CCCCC
Q 042875 86 ELNLRFSK-VEQPWEGEKACVP-SSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFP----QISGK 158 (432)
Q Consensus 86 ~L~l~~~~-l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~----~~~~~ 158 (432)
+|++++|. +.. ++ ..+..+++|++|++++|...+..+ .+..+++|++|+++++.... ++ ..+.+
T Consensus 127 ~L~L~~n~~~~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~ 197 (549)
T 2z81_A 127 TLRIGNVETFSE--------IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSS 197 (549)
T ss_dssp EEEEEESSSCCE--------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTT
T ss_pred EEECCCCccccc--------cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhccc
Confidence 99999997 432 43 468899999999999998877666 45668888888888876542 22 23567
Q ss_pred ccEEEeccccccccc----ccccCCCCCCEEeecccccccccc----chhcCCCCccEEEecCccCcc------------
Q 042875 159 ITRLYLDQSAIEEVP----SSIECLTDLEVLDLRDCKRLKRIS----TRFCKLRSLVDLFVNGCLNLE------------ 218 (432)
Q Consensus 159 L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~------------ 218 (432)
++.|++.+|.+...+ .....+++|+.|++++|.+.+..+ ..+..+++|+.+++.+|...+
T Consensus 198 L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 277 (549)
T 2z81_A 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277 (549)
T ss_dssp BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhh
Confidence 888888888776542 122345667777777665543222 222334445555544443221
Q ss_pred -----------------------cchHhhhcCCCCCeeeeccccccccCccc-CCCCCccEEeecCCCCCCccc---ccc
Q 042875 219 -----------------------RFPEILEKMEHLKRINLDGTAITELPSSF-ENLPGLEELFVSDCSKLDKLP---DNI 271 (432)
Q Consensus 219 -----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~ 271 (432)
.++.......+|+++++++|.+..+|..+ ..+++|+.|++++|.+.+..+ ..+
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 11122233456777777777777777655 467788888888887766543 235
Q ss_pred CCcccccccccccccccccC---ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCC
Q 042875 272 GNLESLRHISAAGSAISQLP---SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSL 348 (432)
Q Consensus 272 ~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 348 (432)
..+++|++|++++|.+..++ ..+..+++|++|++++|.+. .+|.. +..+++|+.|++++|.+..++..+ .++|
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L 433 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS-CQWPEKMRFLNLSSTGIRVVKTCI--PQTL 433 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC-CCCCTTCCEEECTTSCCSCCCTTS--CTTC
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh-hcccccccEEECCCCCcccccchh--cCCc
Confidence 66788888888888776544 34677788888888887654 44443 345677888888888877766543 3578
Q ss_pred CEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCCCccEEeccCCCCccccCC----CCCccceecccccc
Q 042875 349 KSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPLCLKYLHLTGCNMLRSLPE----LPLCLQELDATNCN 422 (432)
Q Consensus 349 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~ 422 (432)
++|++++|+++.++ ..+++|++|++++|++. .+|. .+++|++|++++|. ++.++. ..+.|++|++++++
T Consensus 434 ~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 434 EVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred eEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCC
Confidence 88888888777654 46777888888887754 5553 34678888888753 444433 45677788887766
Q ss_pred ccc
Q 042875 423 RLQ 425 (432)
Q Consensus 423 ~l~ 425 (432)
...
T Consensus 509 ~~~ 511 (549)
T 2z81_A 509 WDC 511 (549)
T ss_dssp BCC
T ss_pred ccC
Confidence 443
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.9e-34 Score=280.04 Aligned_cols=372 Identities=17% Similarity=0.135 Sum_probs=253.0
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELN 88 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~ 88 (432)
.+|+++|.+..+.+.+|.++++|++|++++|++.+ ..|..+..++ +|++|++++|.++.+|.. .+++|++|+
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~ 127 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS------LDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMASLRHLD 127 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE------ECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTTCSEEE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCc------CCHHHhCCCC-CCCEEECCCCcCCccCcc-ccccCCEEE
Confidence 46678888888877888888888888888888875 3456677775 888888888888888777 788888888
Q ss_pred eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCc--eEEEecCccc--ccccCCCCC-------
Q 042875 89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP--VTINFSYCVT--LIEFPQISG------- 157 (432)
Q Consensus 89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~------- 157 (432)
+++|.++.+. +|..++++++|++|++++|..... .+..+++| ++|++++|.+ ....+..+.
T Consensus 128 Ls~N~l~~l~------~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 128 LSFNDFDVLP------VCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp CCSSCCSBCC------CCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred CCCCCccccC------chHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 8888877521 346688888888888888766542 33334444 8888888776 333333222
Q ss_pred ----------------------CccEEEecccc-----cccccccccCCC---------------------------CCC
Q 042875 158 ----------------------KITRLYLDQSA-----IEEVPSSIECLT---------------------------DLE 183 (432)
Q Consensus 158 ----------------------~L~~L~l~~~~-----~~~~~~~~~~~~---------------------------~L~ 183 (432)
+++.+++.+|. +......+..++ +|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 33344444332 011111222233 344
Q ss_pred EEeeccccccccccchh-----cCCCCccEEEecCccCcccch-Hhhh---cCCCCCeeeeccccccccCcccCCCCCcc
Q 042875 184 VLDLRDCKRLKRISTRF-----CKLRSLVDLFVNGCLNLERFP-EILE---KMEHLKRINLDGTAITELPSSFENLPGLE 254 (432)
Q Consensus 184 ~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~---~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 254 (432)
+|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...++++|+++++.+...+. ...+++|+
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~ 356 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFT 356 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCC
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCce
Confidence 44444444333333332 2222333333322222 112 1111 12467778887777764331 26788999
Q ss_pred EEeecCCCCCCccccccCCcccccccccccccccccC---ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee
Q 042875 255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP---SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM 331 (432)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 331 (432)
+|++++|.+.+..|..+..+++|++|++++|.+..++ ..+..+++|++|++++|...+.++...+..+++|+.|+++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 9999999888888888889999999999999888554 4578889999999999987766776667778899999999
Q ss_pred ccCCCC-CchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC----CCCCccEEeccCCCC
Q 042875 332 NCAVME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA----LPLCLKYLHLTGCNM 402 (432)
Q Consensus 332 ~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~c~~ 402 (432)
+|.++. +|..+. ++|+.|++++|+++.+|..+..+++|++|++++|++. .+|. .+++|+.|++.+|+.
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 999876 443332 6899999999999999888888999999999998865 4553 246789999998764
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.6e-33 Score=267.23 Aligned_cols=342 Identities=17% Similarity=0.233 Sum_probs=245.6
Q ss_pred cccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCccccc
Q 042875 26 TNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACV 105 (432)
Q Consensus 26 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 105 (432)
..+++++.|+++++.+. .++ .+..++ +|++|++++|.++.++....+++|++|++++|.++. +
T Consensus 43 ~~l~~l~~L~l~~~~i~-------~l~-~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------~ 105 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-------SID-GVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--------I 105 (466)
T ss_dssp HHHHTCCEEECCSSCCC-------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------C
T ss_pred hHhccccEEecCCCCCc-------cCc-chhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCcccc--------C
Confidence 44677888888877775 334 356665 888888888887777765577888888888887764 3
Q ss_pred CCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCccccccc-CCCCCCccEEEecccccccccccccCCCCCCE
Q 042875 106 PSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEF-PQISGKITRLYLDQSAIEEVPSSIECLTDLEV 184 (432)
Q Consensus 106 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 184 (432)
+. +.++++|++|++++|...+ ++.+..+++|++|++++|.+...- ...+.+|+.|++.+ ....++ .+..+++|+.
T Consensus 106 ~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~ 181 (466)
T 1o6v_A 106 TP-LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLK-PLANLTTLER 181 (466)
T ss_dssp GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCE
T ss_pred hh-hcCCCCCCEEECCCCCCCC-ChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCch-hhccCCCCCE
Confidence 33 6778888888888865443 445677888888888887655321 13456777887753 333333 3777888888
Q ss_pred EeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCC
Q 042875 185 LDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKL 264 (432)
Q Consensus 185 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 264 (432)
|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++ .+..+++|+.|++++|.+.
T Consensus 182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred EECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc
Confidence 88888775442 236778888888888876655443 567788888888888877653 4677788888888888766
Q ss_pred CccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhc
Q 042875 265 DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAY 344 (432)
Q Consensus 265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 344 (432)
+..+ +..+++|++|++++|.+..++. +..+++|++|++++|...+..+ +..+++|+.|++++|.+.+++. +..
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~ 329 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-VSS 329 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-GGG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-hcc
Confidence 5443 6778888888888888776655 6778888888888887554333 4467888888888888887654 677
Q ss_pred CCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccC-CCCCCccEEeccCCC
Q 042875 345 LSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLP-ALPLCLKYLHLTGCN 401 (432)
Q Consensus 345 ~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~c~ 401 (432)
+++|+.|++++|.++.+ +.+..+++|++|++++|++.+..| ..+++|+.|++.+|+
T Consensus 330 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 88888888888888876 467788888888888888766555 345678888888864
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-32 Score=262.38 Aligned_cols=339 Identities=18% Similarity=0.250 Sum_probs=257.5
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNL 89 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l 89 (432)
+++.++.+..+. .+..+++|++|++++|++.+ ++. +..++ +|++|++++|.+..++...++++|++|++
T Consensus 51 L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 51 LQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-------ITP-LKNLT-KLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-------CGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred EecCCCCCccCc--chhhhcCCCEEECCCCccCC-------chh-hhccc-cCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 445666555553 47888899999999888874 343 67775 89999998888887777568888999999
Q ss_pred ccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccccc
Q 042875 90 RFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAI 169 (432)
Q Consensus 90 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 169 (432)
++|.++. ++. +..+++|++|++++|... .++.+..+++|++|+++++.........+++|+.|++.+|.+
T Consensus 120 ~~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 120 FNNQITD--------IDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CSSCCCC--------CGG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCCCCCC--------ChH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC
Confidence 8888764 332 788888999999887654 356677788888888864322211123556888888888888
Q ss_pred ccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCC
Q 042875 170 EEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFEN 249 (432)
Q Consensus 170 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 249 (432)
..++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ + ..+..+++|++|++++|.++..+. +..
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 263 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LSG 263 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hhc
Confidence 7764 47778889999998887665444 6678889999998876554 3 356788889999998888886654 778
Q ss_pred CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875 250 LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY 329 (432)
Q Consensus 250 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (432)
+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++|...+..+ +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCEeE
Confidence 8889999998887665433 6778889999998888876654 6788889999998887665444 34778899999
Q ss_pred eeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc
Q 042875 330 IMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 330 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~ 383 (432)
+++|.+..++ .+..+++|+.|++++|+++.+++ +..+++|++|++++|++.+
T Consensus 338 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 9988888874 57788889999999988886655 7888889999998887654
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5e-33 Score=264.71 Aligned_cols=358 Identities=20% Similarity=0.218 Sum_probs=227.5
Q ss_pred CchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCCCC-CCCC-------------ce
Q 042875 21 DPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPSNF-KPKN-------------LV 85 (432)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~~~-~~~~-------------L~ 85 (432)
.|+.+. .++|++|++++|.+ + .+|..++.+. +|++|++++|.+. .+|..+ ++.+ ++
T Consensus 4 ~p~~~~-~~~L~~L~l~~n~l-~------~iP~~i~~L~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~ 74 (454)
T 1jl5_A 4 NPRNVS-NTFLQEPLRHSSNL-T------EMPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74 (454)
T ss_dssp --------------------------------------C-CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred cccccc-cccchhhhcccCch-h------hCChhHhccc-chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCC
Confidence 344554 58999999999999 4 7899999996 9999999999775 777765 5554 59
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEec
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLD 165 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~ 165 (432)
+|++++|.++. +|. -.++|+.|++++|...+ +|.. .++|++|++++|.+. .++...++++.|++.
T Consensus 75 ~L~l~~~~l~~--------lp~---~~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~-~l~~~~~~L~~L~L~ 139 (454)
T 1jl5_A 75 ELELNNLGLSS--------LPE---LPPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLK-ALSDLPPLLEYLGVS 139 (454)
T ss_dssp EEECTTSCCSC--------CCS---CCTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCS-CCCSCCTTCCEEECC
T ss_pred EEEecCCcccc--------CCC---CcCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccC-cccCCCCCCCEEECc
Confidence 99999999875 443 23789999999987765 6643 479999999998766 355555789999999
Q ss_pred ccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc
Q 042875 166 QSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS 245 (432)
Q Consensus 166 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 245 (432)
+|.+..+| .++.+++|++|++++|.+.+ +|.. ..+|+.|++++|.+.+ +| .+..+++|++|++++|.++.+|.
T Consensus 140 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 140 NNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC
Confidence 99999888 68999999999999987654 4443 3589999999987665 55 57889999999999998887765
Q ss_pred ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCc
Q 042875 246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSL 325 (432)
Q Consensus 246 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 325 (432)
. .++|++|++++|.+. .+|. +..+++|++|++++|.+..++.. .++|++|++++|.+.+ ++. .+++|
T Consensus 213 ~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~----~~~~L 279 (454)
T 1jl5_A 213 L---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPE----LPQSL 279 (454)
T ss_dssp C---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCC----CCTTC
T ss_pred C---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCc----ccCcC
Confidence 3 258899999988766 5664 78889999999999888876653 3678888888887543 332 24667
Q ss_pred cEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCCccc
Q 042875 326 GLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRS 405 (432)
Q Consensus 326 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 405 (432)
+.|++++|.+..++.. .++|+.|++++|.++.++.. .++|++|++++|++.+ +|..+++|++|++++| .++.
T Consensus 280 ~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N-~l~~ 351 (454)
T 1jl5_A 280 TFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPALPPRLERLIASFN-HLAE 351 (454)
T ss_dssp CEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSC
T ss_pred CEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-ccccCCcCCEEECCCC-cccc
Confidence 7777777777664321 24555555555555543311 1355555555554332 4444455555555553 3344
Q ss_pred cCCCCCccceeccccccccccCCCCC
Q 042875 406 LPELPLCLQELDATNCNRLQSLPEIP 431 (432)
Q Consensus 406 l~~~~~~L~~L~l~~c~~l~~lp~~p 431 (432)
+|..+++|++|++++ ++++.+|.+|
T Consensus 352 lp~~l~~L~~L~L~~-N~l~~l~~ip 376 (454)
T 1jl5_A 352 VPELPQNLKQLHVEY-NPLREFPDIP 376 (454)
T ss_dssp CCCCCTTCCEEECCS-SCCSSCCCCC
T ss_pred ccchhhhccEEECCC-CCCCcCCCCh
Confidence 444444555555554 2444444444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.9e-33 Score=264.94 Aligned_cols=358 Identities=14% Similarity=0.127 Sum_probs=260.6
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCC-CCCC-CC-CCCCcee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLR-ILPS-NF-KPKNLVE 86 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~l~~-~~-~~~~L~~ 86 (432)
++.++..+..++. + .++|++|++++|++.+ ..+..+..++ +|++|++++|.+. .++. .+ ++++|++
T Consensus 15 ~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~------~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 15 AICINRGLHQVPE--L--PAHVNYVDLSLNSIAE------LNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp EECCSSCCSSCCC--C--CTTCCEEECCSSCCCE------ECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred cCcCCCCcccCCC--C--CCccCEEEecCCccCc------CChhHhccCc-cccEEECcCCcccceECcccccccccCCE
Confidence 5556655555543 2 2688999999988875 4466778886 8999999988764 4433 23 7888999
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-C--CCCCCCceEEEecCcccccccCC----CCCCc
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-S--NLHFVCPVTINFSYCVTLIEFPQ----ISGKI 159 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~----~~~~L 159 (432)
|++++|.++.. .|..+..+++|++|++++|...+..+ . +..+++|++|++++|.+....+. .+++|
T Consensus 84 L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 84 LKLDYNQFLQL-------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp EECTTCTTCEE-------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred EeCCCCccCcc-------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 99999888753 46678888999999999887765443 2 66688899999998887755443 35678
Q ss_pred cEEEeccccccccc-ccccCC--CCCCEEeeccccccccccc--------hhcCCCCccEEEecCccCcccchHhhhcC-
Q 042875 160 TRLYLDQSAIEEVP-SSIECL--TDLEVLDLRDCKRLKRIST--------RFCKLRSLVDLFVNGCLNLERFPEILEKM- 227 (432)
Q Consensus 160 ~~L~l~~~~~~~~~-~~~~~~--~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~l~~l- 227 (432)
+.|++.+|.+..++ ..+..+ .+++.+++++|.+....+. .+..+++|+.|++++|.+.+..+..+...
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 88888888776543 344433 5778888888776543222 13355788888888887777666665543
Q ss_pred --CCCCeeeeccccccccC-----------ccc--CCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-C
Q 042875 228 --EHLKRINLDGTAITELP-----------SSF--ENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-P 291 (432)
Q Consensus 228 --~~L~~L~l~~~~~~~~~-----------~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~ 291 (432)
.+++.++++++...... ..+ ...++|+.|++++|.+.+..+..+..+++|++|++++|.+..+ +
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 77888888876543110 011 1235788999998888877788888888999999998888854 5
Q ss_pred ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCC
Q 042875 292 SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLS 369 (432)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~ 369 (432)
..+..+++|++|++++|.+.. ++...+..+++|++|++++|.+.. .|..+..+++|++|++++|+++.+|. .+..++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 577888889999998887543 433446678889999999998888 46678888899999999998887765 457888
Q ss_pred CCCeeeccCCCCCcccC
Q 042875 370 RLCSLDLRRCNMLQSLP 386 (432)
Q Consensus 370 ~L~~L~l~~~~~~~~~~ 386 (432)
+|++|++++|++....|
T Consensus 396 ~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCCcccCCC
Confidence 89999999888776665
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-32 Score=269.39 Aligned_cols=395 Identities=15% Similarity=0.130 Sum_probs=228.8
Q ss_pred EeeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCC-CC-CCCCce
Q 042875 8 IFLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPS-NF-KPKNLV 85 (432)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~-~~-~~~~L~ 85 (432)
..+|++++.+..++. .+. ++|++|++++|++.+ ..+..+..++ +|++|++++|.++.++. .+ ++++|+
T Consensus 34 ~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISE------LRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCC------CCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccc------cChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 457788887777654 333 788999999998875 3345677886 89999999998886643 33 788999
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCCc--cE
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGKI--TR 161 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L--~~ 161 (432)
+|++++|.++. +|.. .+++|++|++++|.... .+| .+.++++|++|++++|.+.......+.++ +.
T Consensus 104 ~L~Ls~N~l~~--------lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~ 173 (562)
T 3a79_B 104 YLDVSHNRLQN--------ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173 (562)
T ss_dssp EEECTTSCCCE--------ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEE
T ss_pred EEECCCCcCCc--------cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeE
Confidence 99999998874 5555 78889999999887655 333 56678899999999888765444445555 88
Q ss_pred EEeccccc--c-cccccccC--------------------------CCCCCEEeeccccc----cccccchhcCCCCccE
Q 042875 162 LYLDQSAI--E-EVPSSIEC--------------------------LTDLEVLDLRDCKR----LKRISTRFCKLRSLVD 208 (432)
Q Consensus 162 L~l~~~~~--~-~~~~~~~~--------------------------~~~L~~L~l~~~~~----~~~~~~~~~~~~~L~~ 208 (432)
|++.+|.+ . ..|..+.. +++|+.+++++|.. .......+..+++|+.
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 88888776 2 22333333 33444444444320 1111223344445555
Q ss_pred EEecCccCccc----chHhhhcCCCCCeeeecccccc-ccCccc-----CCCCCccEEeecCCCCCCcccc-ccCC---c
Q 042875 209 LFVNGCLNLER----FPEILEKMEHLKRINLDGTAIT-ELPSSF-----ENLPGLEELFVSDCSKLDKLPD-NIGN---L 274 (432)
Q Consensus 209 L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~-~~~~---l 274 (432)
+++.++...+. ++.. ....+|++|++++|.++ .+|..+ ..++.|+.+++..+.+ .+|. .+.. .
T Consensus 254 L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~ 330 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred EEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence 55544433221 1111 12346677777776666 555444 4444444444444332 2221 1100 1
Q ss_pred ccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCc---hhhhcCCCCCEE
Q 042875 275 ESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIP---QEIAYLSSLKSL 351 (432)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L 351 (432)
.+|++|++++|.+...+. ...+++|++|++++|...+..+.. +..+++|+.|++++|.+..++ ..+..+++|+.|
T Consensus 331 ~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 335555555555442221 145566666666666654433332 345566666666666666532 345566666666
Q ss_pred EeeCCCCcc-cChh-ccCCCCCCeeeccCCCCCcccCCCC-CCccEEeccCCCCccccCC---CCCccceeccccccccc
Q 042875 352 DLRGNNFES-LPAS-IKQLSRLCSLDLRRCNMLQSLPALP-LCLKYLHLTGCNMLRSLPE---LPLCLQELDATNCNRLQ 425 (432)
Q Consensus 352 ~l~~n~l~~-l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~ 425 (432)
++++|.++. +|.. +..+++|++|++++|++.+.++... ++|++|++++| .++.+|. ..+.|++|++++ ++++
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~ 486 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLK 486 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCC
Confidence 666666664 5543 4556666666666666555555433 46666666664 4455544 345566666666 3555
Q ss_pred cCCC
Q 042875 426 SLPE 429 (432)
Q Consensus 426 ~lp~ 429 (432)
.+|+
T Consensus 487 ~l~~ 490 (562)
T 3a79_B 487 SVPD 490 (562)
T ss_dssp CCCT
T ss_pred CCCH
Confidence 5553
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.9e-31 Score=244.27 Aligned_cols=306 Identities=20% Similarity=0.252 Sum_probs=157.6
Q ss_pred hhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCccc
Q 042875 24 AFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA 103 (432)
Q Consensus 24 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 103 (432)
.+..+++|++|+++++.+.+ ++ .+..++ +|++|++++|.++.++....+++|++|++++|.++.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-------~~-~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~------- 102 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-------IQ-GIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD------- 102 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-------CT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-------
T ss_pred cchhcccccEEEEeCCcccc-------ch-hhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccC-------
Confidence 44556666666666666652 22 345554 666666666666665554466666666666666553
Q ss_pred ccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCC
Q 042875 104 CVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLE 183 (432)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 183 (432)
+ +.+..+++|++|++++|... .++.+..+++|++|++++|..... +..+..+++|+
T Consensus 103 -~-~~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~---------------------~~~~~~l~~L~ 158 (347)
T 4fmz_A 103 -I-SALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSD---------------------LSPLSNMTGLN 158 (347)
T ss_dssp -C-GGGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCC---------------------CGGGTTCTTCC
T ss_pred -c-hHHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCccc---------------------ccchhhCCCCc
Confidence 2 13556666666666665433 233344555555555555543321 12244555555
Q ss_pred EEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCC
Q 042875 184 VLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSK 263 (432)
Q Consensus 184 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 263 (432)
+|++++|......+ +..+++|+.|++++|.+.+. +. +..+++|+.+++++|.++..+. +..+++|++|++++|.+
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCcc
Confidence 55555554333221 44555555555555543322 21 4455555555555555554333 44555555555555544
Q ss_pred CCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-Cchhh
Q 042875 264 LDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEI 342 (432)
Q Consensus 264 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~ 342 (432)
....+ +..+++|++|++++|.+..+ ..+..+++|++|++++|...+ ++ .+..+++|+.|++++|.+.. .+..+
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHh
Confidence 33222 44555555555555555443 234445555555555554322 21 13345555555555555554 33445
Q ss_pred hcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875 343 AYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 343 ~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~ 381 (432)
+.+++|+.|++++|.++.+++ +..+++|++|++++|++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred hccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 555556666666655554443 45555555555555553
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-31 Score=253.58 Aligned_cols=356 Identities=16% Similarity=0.132 Sum_probs=262.5
Q ss_pred eeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCceeeeeccccccccCCCccccc-CCcc
Q 042875 33 LLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLVELNLRFSKVEQPWEGEKACV-PSSI 109 (432)
Q Consensus 33 ~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~-~~~~ 109 (432)
.++.+++.+. .+|. +|.+|++|++++|.++.+ +..+ ++++|++|++++|.+.. . + +..|
T Consensus 14 ~~~c~~~~l~-------~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~---i~~~~~ 75 (455)
T 3v47_A 14 NAICINRGLH-------QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----V---IRNNTF 75 (455)
T ss_dssp EEECCSSCCS-------SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----E---ECTTTT
T ss_pred ccCcCCCCcc-------cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----e---ECcccc
Confidence 4566666665 4554 335899999999998866 3333 89999999999998752 1 3 4568
Q ss_pred cCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccC-----CCCCCccEEEecccccccc-ccc-ccCCCC
Q 042875 110 QNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFP-----QISGKITRLYLDQSAIEEV-PSS-IECLTD 181 (432)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~ 181 (432)
..+++|++|++++|......+ .+..+++|++|++++|.+....+ ..+.+|+.|++.+|.+..+ |.. +..+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 899999999999988776656 56679999999999998875332 3456899999999988776 444 788999
Q ss_pred CCEEeeccccccccccchhcCC--CCccEEEecCccCcccchHh--------hhcCCCCCeeeecccccc-ccCccc---
Q 042875 182 LEVLDLRDCKRLKRISTRFCKL--RSLVDLFVNGCLNLERFPEI--------LEKMEHLKRINLDGTAIT-ELPSSF--- 247 (432)
Q Consensus 182 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~-~~~~~~--- 247 (432)
|++|++++|.+.+..+..+..+ .+|+.++++++.+....+.. +..+++|++|++++|.++ ..+..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 9999999998877767666655 68899999988765433222 235578999999999887 233322
Q ss_pred CCCCCccEEeecCCCCCCccc----------cccC--Cccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCC
Q 042875 248 ENLPGLEELFVSDCSKLDKLP----------DNIG--NLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSL 314 (432)
Q Consensus 248 ~~l~~L~~L~l~~~~~~~~~~----------~~~~--~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 314 (432)
...++++.|++++|...+... ..+. ..++|+++++++|.+. ..+..+..+++|++|++++|.+.+..
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 234789999998875443211 1111 2367888999998887 44666788889999999888865443
Q ss_pred chhhhcCCCCccEEEeeccCCCCC-chhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---CC
Q 042875 315 PRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---LP 389 (432)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~ 389 (432)
+. .+..+++|++|++++|.+.++ +..+..+++|++|++++|+++.+ |..+..+++|++|++++|++.+..+. .+
T Consensus 316 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DN-AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TT-TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hh-HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 33 355788899999999988874 66778889999999999988855 67788889999999999886654332 34
Q ss_pred CCccEEeccCCCCccccC
Q 042875 390 LCLKYLHLTGCNMLRSLP 407 (432)
Q Consensus 390 ~~L~~L~l~~c~~l~~l~ 407 (432)
++|++|++++|+.-...|
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 678899998876544433
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-31 Score=252.66 Aligned_cols=307 Identities=16% Similarity=0.099 Sum_probs=206.4
Q ss_pred cCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCC
Q 042875 20 LDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWE 99 (432)
Q Consensus 20 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~ 99 (432)
..+..+..+++|++|++++|.+.+ +| .+..++ +|++|++++|.++.++ ...+++|++|++++|.++.
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-------~~-~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~--- 99 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-------MT-GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN--- 99 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-------CT-TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC---
T ss_pred ccccChhHcCCCCEEEccCCCccc-------Ch-hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce---
Confidence 344577888999999999998874 34 577776 8999999999888876 5588889999999998875
Q ss_pred CcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccc-ccccccccccC
Q 042875 100 GEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQS-AIEEVPSSIEC 178 (432)
Q Consensus 100 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~ 178 (432)
++ ++.+++|++|++++|...+ ++ +..+++|++|++++|.+...-...+.+|+.|++.+| .++.+ .+..
T Consensus 100 -----~~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~ 168 (457)
T 3bz5_A 100 -----LD--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTP 168 (457)
T ss_dssp -----CC--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTT
T ss_pred -----ee--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--cccc
Confidence 32 6788899999999886654 44 677888999999888776533345667888888887 34444 4667
Q ss_pred CCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEee
Q 042875 179 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFV 258 (432)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 258 (432)
+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+.+. .+..+++|++|++++|+++.+| +..+++|+.|++
T Consensus 169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDC 240 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEEC
T ss_pred CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEe
Confidence 7888888888887655 33 66778888888888766553 2667788888888888888776 677888888888
Q ss_pred cCCCCCCccccccCCccccc----------cccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875 259 SDCSKLDKLPDNIGNLESLR----------HISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL 327 (432)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~L~----------~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 327 (432)
++|.+.+..+ ..+++|+ .+++++|... .+| .+.+++|+.|++++|...+.++.. ...|+.
T Consensus 241 ~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~----~~~L~~ 311 (457)
T 3bz5_A 241 SVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ----AAGITE 311 (457)
T ss_dssp CSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT----TCCCSC
T ss_pred eCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC----CCcceE
Confidence 8887765432 3344444 4444444322 222 345566777777766654444321 112222
Q ss_pred EEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875 328 LYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 328 L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~ 381 (432)
++ ++.+++|++|++++|+++.++ ++.+++|+.|++++|++
T Consensus 312 L~------------l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 312 LD------------LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CC------------CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ec------------hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCC
Confidence 21 223345555555555555442 45555555555555554
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=8.6e-31 Score=261.79 Aligned_cols=379 Identities=18% Similarity=0.125 Sum_probs=249.3
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--CCCCcee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLVE 86 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~ 86 (432)
.||+++|.+..+.+.+|.++++|++|+|++|++.+ .-+..+..++ +|++|+|++|.++.++... ++++|++
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~------i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC------cChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 57889999999999999999999999999999985 2234577886 9999999999999888653 8999999
Q ss_pred eeeccccccccCCCcccccCCcccCcccCceEeccCCccCC-cCC-CCCCCCCceEEEecCcccccccCCCCCC------
Q 042875 87 LNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLR-SFP-SNLHFVCPVTINFSYCVTLIEFPQISGK------ 158 (432)
Q Consensus 87 L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 158 (432)
|++++|.++.+ .+..|+++++|++|++++|.... .++ .+..+++|++|++++|.+....+..+..
T Consensus 129 L~Ls~N~l~~l-------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 129 LVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp EECTTSCCCCS-------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred EECCCCcCCCC-------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 99999999864 23348899999999999987754 345 3456899999999998765332211110
Q ss_pred -ccEEEecccccccccc---------------------------------------------------------------
Q 042875 159 -ITRLYLDQSAIEEVPS--------------------------------------------------------------- 174 (432)
Q Consensus 159 -L~~L~l~~~~~~~~~~--------------------------------------------------------------- 174 (432)
...+++..+.+..++.
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 0111111111111000
Q ss_pred -----------------------------------------cccCCCCCCEEeecccccccccc----------------
Q 042875 175 -----------------------------------------SIECLTDLEVLDLRDCKRLKRIS---------------- 197 (432)
Q Consensus 175 -----------------------------------------~~~~~~~L~~L~l~~~~~~~~~~---------------- 197 (432)
.+.....++.|++.+|.+.....
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 01112233334333332211100
Q ss_pred ---chhcCCCCccEEEecCccCcc--cchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccc-ccc
Q 042875 198 ---TRFCKLRSLVDLFVNGCLNLE--RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLP-DNI 271 (432)
Q Consensus 198 ---~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 271 (432)
.....+++|+.++++++.... ..+.....+.+++++++..+.....+..+..+++++.+++..+......+ ..+
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence 001123444444444443321 12333444555555555555555445556666777777777665443332 345
Q ss_pred CCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCC
Q 042875 272 GNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLK 349 (432)
Q Consensus 272 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~ 349 (432)
..+++++.++++.|.+. ..+..+..++.++.|++++|..........+..+++|++|++++|++.. .|..+..+++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 66778888888888776 3445567778888888888875555444456677888888888888888 456678888888
Q ss_pred EEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccCCC----CCCccEEeccCCC
Q 042875 350 SLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLPAL----PLCLKYLHLTGCN 401 (432)
Q Consensus 350 ~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~c~ 401 (432)
+|+|++|+++.++ ..++.+++|++|++++|++.+..|.. +++|+.|++.+|+
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8888888888664 45778888888888888877766643 2578888888765
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2e-30 Score=239.58 Aligned_cols=303 Identities=18% Similarity=0.184 Sum_probs=231.1
Q ss_pred ccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCC
Q 042875 55 LEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLH 134 (432)
Q Consensus 55 l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 134 (432)
+..++ +|++|+++++.+..++....+++|++|++++|.++. ++. +..+++|++|++++|... .++.+..
T Consensus 40 ~~~l~-~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~--------~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~ 108 (347)
T 4fmz_A 40 QEELE-SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--------ISP-LSNLVKLTNLYIGTNKIT-DISALQN 108 (347)
T ss_dssp HHHHT-TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCC-CCGGGTT
T ss_pred chhcc-cccEEEEeCCccccchhhhhcCCccEEEccCCcccc--------chh-hhcCCcCCEEEccCCccc-CchHHcC
Confidence 34564 888888888888888776688888888888888764 333 778888888888887543 3555666
Q ss_pred CCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCc
Q 042875 135 FVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGC 214 (432)
Q Consensus 135 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (432)
+++|++|++++|.+. .++. +..+++|+.|++++|......+. +..+++|+.|++++|
T Consensus 109 l~~L~~L~l~~n~i~---------------------~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 109 LTNLRELYLNEDNIS---------------------DISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165 (347)
T ss_dssp CTTCSEEECTTSCCC---------------------CCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCcCCEEECcCCccc---------------------Cchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC
Confidence 777777777766533 3333 67789999999999876665544 788999999999998
Q ss_pred cCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc
Q 042875 215 LNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV 294 (432)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 294 (432)
......+ +..+++|++|++++|.++.++. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+..++. +
T Consensus 166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~ 239 (347)
T 4fmz_A 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-L 239 (347)
T ss_dssp CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred CcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-h
Confidence 7654433 7788999999999998887665 7788899999999987665443 6778899999999998886665 7
Q ss_pred cCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCe
Q 042875 295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCS 373 (432)
Q Consensus 295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~ 373 (432)
..+++|++|++++|.... ++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++ ..+..+..+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 788889999998887544 32 3557788999999988888874 4778888999999998888 44566788888888
Q ss_pred eeccCCCCCcccC-CCCCCccEEeccCCC
Q 042875 374 LDLRRCNMLQSLP-ALPLCLKYLHLTGCN 401 (432)
Q Consensus 374 L~l~~~~~~~~~~-~~~~~L~~L~l~~c~ 401 (432)
|++++|++.+..| ..+++|++|++++|+
T Consensus 316 L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 316 LFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred EEccCCccccccChhhhhccceeehhhhc
Confidence 9888888665555 345677777777764
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8.4e-30 Score=245.61 Aligned_cols=295 Identities=20% Similarity=0.194 Sum_probs=190.0
Q ss_pred hhcceeecCCCCCCCCCC-CC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCC
Q 042875 60 EKLRYLHWDTYPLRILPS-NF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFV 136 (432)
Q Consensus 60 ~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~ 136 (432)
.+++.|++++|.++.++. .+ ++++|++|++++|.++.+ .|..|.++++|+.|++++|......+ .+.+++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-------EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-------ChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 366667777666665533 22 666677777777666542 34456666777777776655433222 234566
Q ss_pred CceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccC
Q 042875 137 CPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLN 216 (432)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 216 (432)
+|++|++++|.+... .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 105 ~L~~L~Ls~n~i~~~--------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 105 NLTKLDISENKIVIL--------------------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp TCCEEECTTSCCCEE--------------------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCEEECCCCccccC--------------------ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 666666666654421 233455666777777777666555555666677777777777666
Q ss_pred cccchHhhhcCCCCCeeeeccccccccC-cccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccc
Q 042875 217 LERFPEILEKMEHLKRINLDGTAITELP-SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSV 294 (432)
Q Consensus 217 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~ 294 (432)
....+..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|...+.++.......+|++|++++|.+..++ ..+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 5555556667777777777777776443 35666777777777777766666665555567777777777777665 346
Q ss_pred cCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCC
Q 042875 295 ADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLC 372 (432)
Q Consensus 295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~ 372 (432)
..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.++. .+..+++|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred cCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 66777777777777643 3333345566777777777777777 45566777777777777777776654 346677777
Q ss_pred eeeccCCCCC
Q 042875 373 SLDLRRCNML 382 (432)
Q Consensus 373 ~L~l~~~~~~ 382 (432)
+|++++|++.
T Consensus 324 ~L~l~~N~l~ 333 (477)
T 2id5_A 324 TLILDSNPLA 333 (477)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcc
Confidence 7777777653
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.2e-30 Score=243.62 Aligned_cols=323 Identities=16% Similarity=0.148 Sum_probs=247.4
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeee
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELN 88 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~ 88 (432)
.+|++++.+..+. .+..+++|++|++++|++.+ ++ ++.++ +|++|++++|.++.++ ..++++|++|+
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-------LD--LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLN 112 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-------CC--CTTCT-TCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-------Ec--cccCC-CCCEEECcCCCCceee-cCCCCcCCEEE
Confidence 3677888777763 79999999999999999985 33 67786 9999999999999886 55899999999
Q ss_pred eccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccC-CCCCCccEEEeccc
Q 042875 89 LRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFP-QISGKITRLYLDQS 167 (432)
Q Consensus 89 l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~ 167 (432)
+++|.++. ++ ++.+++|++|++++|...+ + ++..+++|++|++++|...+.++ ..+++|+.|++++|
T Consensus 113 L~~N~l~~--------l~--~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 113 CDTNKLTK--------LD--VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CCSSCCSC--------CC--CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred CCCCcCCe--------ec--CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 99999875 33 7889999999999987765 3 47789999999999997665553 35678999999999
Q ss_pred ccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCccc
Q 042875 168 AIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSF 247 (432)
Q Consensus 168 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 247 (432)
.+..+| +..+++|+.|++++|.+.+. .+..+++|+.|++++|.+.+ +| +..+++|++|++++|.++.++ .
T Consensus 181 ~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~ 250 (457)
T 3bz5_A 181 KITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--V 250 (457)
T ss_dssp CCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--H
Confidence 999887 88899999999999987664 37789999999999998776 55 778999999999999999765 3
Q ss_pred CCCCCcc----------EEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCch
Q 042875 248 ENLPGLE----------ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPR 316 (432)
Q Consensus 248 ~~l~~L~----------~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 316 (432)
..+++|+ .+++++|...+.+| +..+++|+.|++++|... .++. ..++++.+++++|
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------- 317 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------- 317 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC--------
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc--------
Confidence 4455554 55555665555555 467899999999999754 3332 3345555555443
Q ss_pred hhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh------------ccCCCCCCeeeccCCCCCcc
Q 042875 317 SLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS------------IKQLSRLCSLDLRRCNMLQS 384 (432)
Q Consensus 317 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~------------~~~l~~L~~L~l~~~~~~~~ 384 (432)
++|+.|++++|.++.++ ++.+++|+.|++++|+++.++.. ...+..|..+++++|++.+.
T Consensus 318 ------~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ 389 (457)
T 3bz5_A 318 ------PKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389 (457)
T ss_dssp ------TTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEE
T ss_pred ------ccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccCcEEEE
Confidence 46777777777777763 67777788888887777654310 01234455666666666666
Q ss_pred cCC
Q 042875 385 LPA 387 (432)
Q Consensus 385 ~~~ 387 (432)
+|.
T Consensus 390 ip~ 392 (457)
T 3bz5_A 390 VSP 392 (457)
T ss_dssp CCT
T ss_pred cCh
Confidence 653
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=244.76 Aligned_cols=310 Identities=16% Similarity=0.149 Sum_probs=194.6
Q ss_pred eccCCceecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCC-CCCC-CCCCceee
Q 042875 10 LDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRIL-PSNF-KPKNLVEL 87 (432)
Q Consensus 10 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L 87 (432)
++.+++.+..+. ..+. +++++|++++|++.+ ..+..+..++ +|++|++++|.++.+ +..+ ++++|++|
T Consensus 16 v~c~~~~l~~ip-~~~~--~~l~~L~L~~n~l~~------~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 16 VLCHRKRFVAVP-EGIP--TETRLLDLGKNRIKT------LNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTL 85 (477)
T ss_dssp EECCSCCCSSCC-SCCC--TTCSEEECCSSCCCE------ECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred EEeCCCCcCcCC-CCCC--CCCcEEECCCCccce------ECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEE
Confidence 444555444443 2332 467778888877765 3345666675 788888887777655 3333 77778888
Q ss_pred eeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCC---CCCCccEEE
Q 042875 88 NLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQ---ISGKITRLY 163 (432)
Q Consensus 88 ~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~ 163 (432)
++++|.++.+. +..+..+++|+.|++++|......+ .+..+++|++|++++|.+....+. .+.+|+.|+
T Consensus 86 ~L~~n~l~~~~-------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 86 GLRSNRLKLIP-------LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp ECCSSCCCSCC-------TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred ECCCCcCCccC-------cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 88877776431 2236777788888888776655544 455677788888877766543332 334666777
Q ss_pred ecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccc
Q 042875 164 LDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE 242 (432)
Q Consensus 164 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 242 (432)
+.+|.+..++. .+..+++|+.|++++|.+....+..+..+++|+.|++++|...+.++.......+|++|++++|.++.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 77766666554 46667777777777776655555566667777777777766666555555555577777777777766
Q ss_pred cC-cccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchhhhc
Q 042875 243 LP-SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRSLLL 320 (432)
Q Consensus 243 ~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 320 (432)
++ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+. .++...+.
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~ 317 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH 317 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBS
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcC
Confidence 55 3456667777777777666555555566666677777776666633 445556666666666666533 33433444
Q ss_pred CCCCccEEEeeccCCCC
Q 042875 321 GLSSLGLLYIMNCAVME 337 (432)
Q Consensus 321 ~~~~L~~L~l~~~~~~~ 337 (432)
.+++|+.|++++|.+..
T Consensus 318 ~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 318 SVGNLETLILDSNPLAC 334 (477)
T ss_dssp CGGGCCEEECCSSCEEC
T ss_pred CCcccCEEEccCCCccC
Confidence 55666666666665543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.6e-29 Score=235.67 Aligned_cols=301 Identities=16% Similarity=0.178 Sum_probs=149.6
Q ss_pred cccceeeeeccccccccccccccCCcc-ccchhhhcceeecCCCCCCCCCCC-C-CCCCceeeeeccccccccCCCcccc
Q 042875 28 MSNLRLLKFYVPKFYEIERFPMQLPNG-LEYLPEKLRYLHWDTYPLRILPSN-F-KPKNLVELNLRFSKVEQPWEGEKAC 104 (432)
Q Consensus 28 l~~L~~L~l~~~~i~~~~~~~~~~~~~-l~~l~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~l~~~~~~~~~~ 104 (432)
++++++|+++++.+. .+|.. +..++ +|++|+++++.++.++.. + .+++|++|++++|.++.+
T Consensus 44 l~~l~~l~l~~~~l~-------~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 108 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-------KLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL------- 108 (390)
T ss_dssp GCCCSEEEEESCEES-------EECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-------
T ss_pred cCCceEEEecCCchh-------hCChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-------
Confidence 345555555555554 23332 23343 555555555555444331 1 445555555555554432
Q ss_pred cCCcccCcccCceEeccCCccCCcCC-C-CCCCCCceEEEecCcccccccCCCCCCccEEEecccccccc-cccccCCCC
Q 042875 105 VPSSIQNFKYLSALSFEGCKSLRSFP-S-NLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEV-PSSIECLTD 181 (432)
Q Consensus 105 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 181 (432)
.|..++.+++|++|++++|... .++ . +..+++|++|++++|.+. .+ +..+..+++
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~~~~l~~ 166 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE---------------------RIEDDTFQATTS 166 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC---------------------BCCTTTTSSCTT
T ss_pred CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC---------------------ccChhhccCCCC
Confidence 2233445555555555554333 222 1 233444444444444322 22 234555666
Q ss_pred CCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCC
Q 042875 182 LEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDC 261 (432)
Q Consensus 182 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 261 (432)
|++|++++|.+... .+..+++|+.+++++|.+.. +....+|++|++++|.+..++.. ..++|+.|++++|
T Consensus 167 L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n 236 (390)
T 3o6n_A 167 LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN 236 (390)
T ss_dssp CCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSS
T ss_pred CCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCC
Confidence 67777766654432 13445666666666654332 12334566666666666644332 2356666666666
Q ss_pred CCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch
Q 042875 262 SKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ 340 (432)
Q Consensus 262 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 340 (432)
.+.+. ..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.. ++.. +..+++|++|++++|.+..+|.
T Consensus 237 ~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~n~l~~~~~ 312 (390)
T 3o6n_A 237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLLHVER 312 (390)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECS-SSCCTTCCEEECCSSCCCCCGG
T ss_pred CCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcc-cCCCCCCCEEECCCCcceecCc
Confidence 55432 2345556666666666655532 4445555555555555554322 2221 2244555555555555555555
Q ss_pred hhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875 341 EIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 341 ~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~ 381 (432)
.+..+++|+.|++++|.++.++ +..+++|++|++++|++
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred cccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCc
Confidence 5555555555555555555443 34455555555555554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.1e-29 Score=233.75 Aligned_cols=304 Identities=16% Similarity=0.099 Sum_probs=246.8
Q ss_pred chhhhcceeecCCCCCCCCCCCC--CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CC
Q 042875 57 YLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NL 133 (432)
Q Consensus 57 ~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 133 (432)
.++ +++.|+++++.++.+|... .+++|++|++++|.++.+ .+..+..+++|++|++++|......+. +.
T Consensus 43 ~l~-~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGC-CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccC-CceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-------ChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 344 8999999999999888864 789999999999998753 334688999999999999877665554 56
Q ss_pred CCCCceEEEecCcccccccCCCCCCccEEEeccccccccccc-ccCCCCCCEEeeccccccccccchhcCCCCccEEEec
Q 042875 134 HFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVN 212 (432)
Q Consensus 134 ~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 212 (432)
.+++|++|++++|.+. .+|.. +..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 115 ~l~~L~~L~L~~n~l~---------------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLS---------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCTTCCEEECCSSCCC---------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CCCCCCEEECCCCccC---------------------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 7889999999887644 23333 5778999999999998877777778899999999999
Q ss_pred CccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc
Q 042875 213 GCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS 292 (432)
Q Consensus 213 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 292 (432)
+|.+... .+..+++|+++++++|.++.++ ..++++.|++++|.+... +. ...++|+.|++++|.+... .
T Consensus 174 ~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~ 242 (390)
T 3o6n_A 174 SNRLTHV---DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A 242 (390)
T ss_dssp SSCCSBC---CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G
T ss_pred CCcCCcc---ccccccccceeecccccccccC----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H
Confidence 9876553 2567889999999999887543 346899999999876543 33 2357899999999998865 5
Q ss_pred cccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCC
Q 042875 293 SVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC 372 (432)
Q Consensus 293 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~ 372 (432)
.+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+..++..+..+++|++|++++|+++.+|..+..+++|+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred HHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 678899999999999986554343 4668899999999999999988877889999999999999999988888999999
Q ss_pred eeeccCCCCCcccCCCCCCccEEeccCCC
Q 042875 373 SLDLRRCNMLQSLPALPLCLKYLHLTGCN 401 (432)
Q Consensus 373 ~L~l~~~~~~~~~~~~~~~L~~L~l~~c~ 401 (432)
+|++++|++...-...+++|++|++.+|+
T Consensus 322 ~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 322 NLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred EEECCCCccceeCchhhccCCEEEcCCCC
Confidence 99999999765544667899999999975
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-28 Score=243.30 Aligned_cols=299 Identities=14% Similarity=0.097 Sum_probs=164.7
Q ss_pred hcceeecCCCCCCCCCCCC--CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CCCCCC
Q 042875 61 KLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVC 137 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 137 (432)
+++.++++++.++.+|... .+++|++|++++|.++.+ .+..|+.+++|+.|++++|.+.+..+. +..+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 4444445444444444432 444555555555544432 222344455555555555443332222 233445
Q ss_pred ceEEEecCcccccccC---CCCCCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecC
Q 042875 138 PVTINFSYCVTLIEFP---QISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNG 213 (432)
Q Consensus 138 L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 213 (432)
|++|++++|.+....+ ..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+... .+..+++|+.|++++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 201 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhccc
Confidence 5555554444331111 11223334444444333333 3566677777777777765443 144466777777777
Q ss_pred ccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCc
Q 042875 214 CLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPS 292 (432)
Q Consensus 214 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~ 292 (432)
|.+.+ +....+|++|++++|.++.++... .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.. .+.
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred Ccccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 64432 223456777777777776554322 3567777777776554 2446666777777777777663 355
Q ss_pred cccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCC
Q 042875 293 SVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLC 372 (432)
Q Consensus 293 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~ 372 (432)
.++.+++|+.|++++|.+.+ ++.. +..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++ +..+++|+
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 348 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECS-SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred HhcCccCCCEEECCCCCCCC-CCcc-cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCC
Confidence 66667777777777766433 2322 23456677777777777666666666677777777777766554 45566777
Q ss_pred eeeccCCCCC
Q 042875 373 SLDLRRCNML 382 (432)
Q Consensus 373 ~L~l~~~~~~ 382 (432)
+|++++|++.
T Consensus 349 ~L~l~~N~~~ 358 (597)
T 3oja_B 349 NLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCEE
T ss_pred EEEeeCCCCC
Confidence 7777776653
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.5e-27 Score=238.30 Aligned_cols=358 Identities=21% Similarity=0.196 Sum_probs=266.8
Q ss_pred eeccCCceecccCchhhcccccceeeeeccccccccccccccCCc-cccchhhhcceeecCCCCCCCCCCCC--CCCCce
Q 042875 9 FLDLSKIKCINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPN-GLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLV 85 (432)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~ 85 (432)
.||+++|.+..+.+.+|.++++|++|+|++|++.+ +|. .+..++ +|++|++++|.++.++... ++++|+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-------l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-------LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-------ECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-------CCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccC
Confidence 36779999999999999999999999999999984 454 467786 9999999999999888753 899999
Q ss_pred eeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC----------------------------CCCCCC
Q 042875 86 ELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS----------------------------NLHFVC 137 (432)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------------------~~~~~~ 137 (432)
+|++++|.++.+ . +|..++.+++|++|++++|.+.+..+. ......
T Consensus 152 ~L~Ls~N~l~~~---~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~ 225 (635)
T 4g8a_A 152 ELNVAHNLIQSF---K---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225 (635)
T ss_dssp EEECCSSCCCCC---C---CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred eeccccCccccC---C---CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence 999999998753 2 566788999999999998865432110 011112
Q ss_pred ceEEEecCcccccc------------------------------------------------------------------
Q 042875 138 PVTINFSYCVTLIE------------------------------------------------------------------ 151 (432)
Q Consensus 138 L~~L~l~~~~~~~~------------------------------------------------------------------ 151 (432)
++.+++.++.....
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence 23333332210000
Q ss_pred ---------------c--CCCCCCccEEEeccccccccc--------------------ccccCCCCCCEEeeccccccc
Q 042875 152 ---------------F--PQISGKITRLYLDQSAIEEVP--------------------SSIECLTDLEVLDLRDCKRLK 194 (432)
Q Consensus 152 ---------------~--~~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~ 194 (432)
. .....+++.|++.++.+..++ .....+++|+.++++.|....
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 0 001123455555554433221 122357788999998887643
Q ss_pred --cccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccccc--CcccCCCCCccEEeecCCCCCCccccc
Q 042875 195 --RISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL--PSSFENLPGLEELFVSDCSKLDKLPDN 270 (432)
Q Consensus 195 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~ 270 (432)
..+..+....+|+.+++..+.... .+..+..+++|+.+++..+..... ...+..+++++.++++.|......+..
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred ccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccc
Confidence 345556778899999998875443 344567889999999988776632 345778899999999999888888888
Q ss_pred cCCccccccccccccccc--ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCC-chhhhcCCC
Q 042875 271 IGNLESLRHISAAGSAIS--QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSS 347 (432)
Q Consensus 271 ~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 347 (432)
+..++.++.|++++|.+. ..+..+..+++|++|++++|.+.+. +...+.++++|++|++++|+++.+ +..+..+++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc-ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 889999999999999754 4677889999999999999985544 444567899999999999999995 456889999
Q ss_pred CCEEEeeCCCCccc-ChhccCC-CCCCeeeccCCCCC
Q 042875 348 LKSLDLRGNNFESL-PASIKQL-SRLCSLDLRRCNML 382 (432)
Q Consensus 348 L~~L~l~~n~l~~l-~~~~~~l-~~L~~L~l~~~~~~ 382 (432)
|++|++++|+++.+ |..+..+ ++|++|++++|++.
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999999955 5567777 68999999999863
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=8.1e-28 Score=237.61 Aligned_cols=302 Identities=15% Similarity=0.149 Sum_probs=186.4
Q ss_pred cccceeeeeccccccccccccccCCcc-ccchhhhcceeecCCCCCCCCCC-C-CCCCCceeeeeccccccccCCCcccc
Q 042875 28 MSNLRLLKFYVPKFYEIERFPMQLPNG-LEYLPEKLRYLHWDTYPLRILPS-N-FKPKNLVELNLRFSKVEQPWEGEKAC 104 (432)
Q Consensus 28 l~~L~~L~l~~~~i~~~~~~~~~~~~~-l~~l~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~l~~~~~~~~~~ 104 (432)
+++++.++++++.+. .+|.. +..++ +|++|++++|.++.++. . ..+++|++|++++|.++.+
T Consensus 50 l~~l~~l~l~~~~l~-------~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 114 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-------KLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL------- 114 (597)
T ss_dssp GCCCSEEEESSCEES-------EECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-------
T ss_pred CCCceEEEeeCCCCC-------CcCHHHHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-------
Confidence 445555555555554 23332 23343 56666666655554443 2 2555566666666555432
Q ss_pred cCCcccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCC---CCCCccEEEecccccccccccccCCC
Q 042875 105 VPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQ---ISGKITRLYLDQSAIEEVPSSIECLT 180 (432)
Q Consensus 105 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~ 180 (432)
.|..++.+++|++|++++|.+....+. +..+++|++|++++|.+....+. .+.+|+.|++.+|.+..++ +..++
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~ 192 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP 192 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCT
T ss_pred CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhh
Confidence 233345556666666665544322222 24455666666666555443332 2345566666666555543 34466
Q ss_pred CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecC
Q 042875 181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSD 260 (432)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 260 (432)
+|+.|++++|.+.+ +...+.|+.|++++|.+....+ . ..++|+.|++++|.++.. ..+..+++|+.|++++
T Consensus 193 ~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 193 SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSY 263 (597)
T ss_dssp TCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCS
T ss_pred hhhhhhcccCcccc-----ccCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCC
Confidence 77777777765432 2234567777777765543221 1 135677777777777754 4567777888888888
Q ss_pred CCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch
Q 042875 261 CSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ 340 (432)
Q Consensus 261 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 340 (432)
|.+.+..|..+..+++|+.|++++|.+..++..+..+++|+.|++++|.+. .++.. +..+++|+.|++++|.+..++
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~-~~~l~~L~~L~L~~N~l~~~~- 340 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIVTLK- 340 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGG-HHHHTTCSEEECCSSCCCCCC-
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcc-cccCCCCCEEECCCCCCCCcC-
Confidence 877777777777788888888888887777777777788888888888754 45544 346788888888888888765
Q ss_pred hhhcCCCCCEEEeeCCCCc
Q 042875 341 EIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 341 ~~~~~~~L~~L~l~~n~l~ 359 (432)
+..+++|+.|++++|.+.
T Consensus 341 -~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp -CCTTCCCSEEECCSSCEE
T ss_pred -hhhcCCCCEEEeeCCCCC
Confidence 567788888999888876
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.8e-31 Score=254.04 Aligned_cols=370 Identities=17% Similarity=0.145 Sum_probs=221.3
Q ss_pred eccCCceecccCchh-hcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCC--CCC-CCC---
Q 042875 10 LDLSKIKCINLDPGA-FTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILP--SNF-KPK--- 82 (432)
Q Consensus 10 l~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~--~~~-~~~--- 82 (432)
+|++++.+.+..... +..+++|++|++++|++.+. ....++..+..++ +|++|++++|.++... ... .+.
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--HHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 455555544333232 56677777777777766531 1112344445554 6777777666654211 111 222
Q ss_pred -CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC----C--CCCCCCceEEEecCcccccccCCC
Q 042875 83 -NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP----S--NLHFVCPVTINFSYCVTLIEFPQI 155 (432)
Q Consensus 83 -~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~--~~~~~~L~~L~l~~~~~~~~~~~~ 155 (432)
+|++|++++|.++...... ++..+..+++|++|++++|......+ . ....++|++|++++|.+.....
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~---l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGV---LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHH---HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred CceeEEEccCCCCCHHHHHH---HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 5666666666665432222 45556666666666666665432211 0 1113345555555554332110
Q ss_pred CCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhc-----CCCCccEEEecCccCccc----chHhhhc
Q 042875 156 SGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFC-----KLRSLVDLFVNGCLNLER----FPEILEK 226 (432)
Q Consensus 156 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~ 226 (432)
..++..+..+++|++|++++|.+....+..+. ..++|+.|++++|.+... ++..+..
T Consensus 160 --------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 160 --------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp --------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred --------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence 12345566678888888888876543333232 255888888888876653 4666777
Q ss_pred CCCCCeeeecccccccc------CcccCCCCCccEEeecCCCCCCc----cccccCCcccccccccccccccc-----cC
Q 042875 227 MEHLKRINLDGTAITEL------PSSFENLPGLEELFVSDCSKLDK----LPDNIGNLESLRHISAAGSAISQ-----LP 291 (432)
Q Consensus 227 l~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~~ 291 (432)
+++|++|++++|.++.. +.....+++|++|++++|.+... ++..+..+++|++|++++|.+.. +.
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 88888888888877632 22234578888888888866543 45556667888888888887752 11
Q ss_pred ccc-cCCCCCcEEeccCCCCCCCCch---hhhcCCCCccEEEeeccCCCC-Cchhhhc-----CCCCCEEEeeCCCCc--
Q 042875 292 SSV-ADSNALLILDFSRCKGLVSLPR---SLLLGLSSLGLLYIMNCAVME-IPQEIAY-----LSSLKSLDLRGNNFE-- 359 (432)
Q Consensus 292 ~~~-~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-----~~~L~~L~l~~n~l~-- 359 (432)
..+ ...++|++|++++|.+...... ..+..+++|++|++++|.+.+ .+..+.. .++|++|++++|.++
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 385 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh
Confidence 111 1235888888888875544221 123356788888888888776 2333322 678888888888887
Q ss_pred ---ccChhccCCCCCCeeeccCCCCCcc--------cCCCCCCccEEeccCCC
Q 042875 360 ---SLPASIKQLSRLCSLDLRRCNMLQS--------LPALPLCLKYLHLTGCN 401 (432)
Q Consensus 360 ---~l~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~~~L~~L~l~~c~ 401 (432)
.+|..+..+++|++|++++|++... ++.....|+.|.+.++.
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred hHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 5677777888888888888876442 33344567777776654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.4e-27 Score=216.54 Aligned_cols=247 Identities=20% Similarity=0.281 Sum_probs=194.4
Q ss_pred CccEEEecccccc---cccccccCCCCCCEEeecc-ccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCee
Q 042875 158 KITRLYLDQSAIE---EVPSSIECLTDLEVLDLRD-CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRI 233 (432)
Q Consensus 158 ~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 233 (432)
+++.|++.++.+. .+|..+..+++|++|++++ +.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 3444555554443 4677788888888888885 77777788888888888888888888877788888888888888
Q ss_pred eecccccc-ccCcccCCCCCccEEeecCCCCCCccccccCCcc-ccccccccccccc-ccCccccCCCCCcEEeccCCCC
Q 042875 234 NLDGTAIT-ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLE-SLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKG 310 (432)
Q Consensus 234 ~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 310 (432)
++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+. ..+..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 88888888 6777888888889999888888777888888877 8888888888887 6677777776 88888888876
Q ss_pred CCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccCCC-
Q 042875 311 LVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLPAL- 388 (432)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~- 388 (432)
.+..+. .+..+++|+.|++++|.++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..
T Consensus 210 ~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGG-GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCH-HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 554443 356788899999988888875555778888999999999888 78888888899999999998887777743
Q ss_pred -CCCccEEeccCCCCcccc
Q 042875 389 -PLCLKYLHLTGCNMLRSL 406 (432)
Q Consensus 389 -~~~L~~L~l~~c~~l~~l 406 (432)
+++|+.+++.+|+.+...
T Consensus 289 ~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TGGGSCGGGTCSSSEEEST
T ss_pred cccccChHHhcCCCCccCC
Confidence 456777777777655443
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=4.2e-30 Score=246.80 Aligned_cols=369 Identities=18% Similarity=0.139 Sum_probs=260.0
Q ss_pred cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCC-----CCCCC-CCCCceeeeeccccccccCCCc
Q 042875 28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRI-----LPSNF-KPKNLVELNLRFSKVEQPWEGE 101 (432)
Q Consensus 28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~l~~~~~~~ 101 (432)
.++|++||++++++.+. .....+..++ +|++|++++|.++. ++..+ .+++|++|++++|.+++.....
T Consensus 2 ~~~l~~L~Ls~~~l~~~-----~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDA-----RWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp CEEEEEEEEESCCCCHH-----HHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred CccceehhhhhcccCch-----hHHHHHhhcC-CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 46889999999988751 2222356676 89999999998763 33333 6788999999998876421111
Q ss_pred ccccCCcccCcc-cCceEeccCCccCC----cCC-CCCCCCCceEEEecCcccccccCCCCCCccEEEeccccccccccc
Q 042875 102 KACVPSSIQNFK-YLSALSFEGCKSLR----SFP-SNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSS 175 (432)
Q Consensus 102 ~~~~~~~~~~l~-~L~~L~l~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 175 (432)
+...+.... +|++|++++|.... .++ .+..+++|++|++++|.+....+ ..+...
T Consensus 76 ---l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~----------------~~l~~~ 136 (461)
T 1z7x_W 76 ---VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL----------------QLLCEG 136 (461)
T ss_dssp ---HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH----------------HHHHHH
T ss_pred ---HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH----------------HHHHHH
Confidence 111122211 68889998887653 233 45567888888888876542211 111122
Q ss_pred -ccCCCCCCEEeecccccccc----ccchhcCCCCccEEEecCccCcccchHhhh-----cCCCCCeeeeccccccc---
Q 042875 176 -IECLTDLEVLDLRDCKRLKR----ISTRFCKLRSLVDLFVNGCLNLERFPEILE-----KMEHLKRINLDGTAITE--- 242 (432)
Q Consensus 176 -~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~--- 242 (432)
....++|++|++++|.+... ++..+..+++|+.|++++|.+....+..+. ..++|++|++++|.++.
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 22356899999999987653 456667789999999999886654333333 36799999999999884
Q ss_pred --cCcccCCCCCccEEeecCCCCCCcc-----ccccCCcccccccccccccccc-----cCccccCCCCCcEEeccCCCC
Q 042875 243 --LPSSFENLPGLEELFVSDCSKLDKL-----PDNIGNLESLRHISAAGSAISQ-----LPSSVADSNALLILDFSRCKG 310 (432)
Q Consensus 243 --~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~ 310 (432)
++..+..+++|++|++++|.+.+.. +.....+++|++|++++|.+.. ++..+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 5667788999999999999765432 2223358999999999998874 667778899999999999975
Q ss_pred CCCCchh----hhcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCccc-Chhc----cC-CCCCCeee
Q 042875 311 LVSLPRS----LLLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFESL-PASI----KQ-LSRLCSLD 375 (432)
Q Consensus 311 ~~~~~~~----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~l-~~~~----~~-l~~L~~L~ 375 (432)
.+..+.. .....++|+.|++++|.++. ++..+..+++|++|++++|.++.. +..+ .. .++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 4432222 22234699999999999986 466678889999999999998832 2323 22 77999999
Q ss_pred ccCCCCCc----ccCC---CCCCccEEeccCCCCccc---------cCCCCCccceecccccc
Q 042875 376 LRRCNMLQ----SLPA---LPLCLKYLHLTGCNMLRS---------LPELPLCLQELDATNCN 422 (432)
Q Consensus 376 l~~~~~~~----~~~~---~~~~L~~L~l~~c~~l~~---------l~~~~~~L~~L~l~~c~ 422 (432)
+++|.+.. .++. .+++|++|++++|+ ++. ++.....|++|++.++.
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 99998764 5553 35789999999985 332 34445568888887753
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5.4e-26 Score=208.15 Aligned_cols=285 Identities=18% Similarity=0.231 Sum_probs=173.2
Q ss_pred hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCce
Q 042875 61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPV 139 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 139 (432)
+++.++++++.++.+|.... +++++|++++|.++.+ .+..+..+++|++|++++|......+ .+..+++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEI-------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCB-------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEe-------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 67777777777776665442 5677777777777643 22346777777777777766555434 445567777
Q ss_pred EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc-
Q 042875 140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE- 218 (432)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 218 (432)
+|++++|.+. .++ ..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 104 ~L~Ls~n~l~-~l~--------------------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 104 RLYLSKNQLK-ELP--------------------EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp EEECCSSCCS-BCC--------------------SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred EEECCCCcCC-ccC--------------------hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence 7777766543 222 2221 355555555555444444445555556666665554432
Q ss_pred -cchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccC
Q 042875 219 -RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVAD 296 (432)
Q Consensus 219 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~ 296 (432)
..+..+..+++|++|++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..++ ..+..
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred CcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 334455566666666666666665554432 56777777776665555556666677777777777666443 35666
Q ss_pred CCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hh------cCCCCCEEEeeCCCCc---ccChhcc
Q 042875 297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IA------YLSSLKSLDLRGNNFE---SLPASIK 366 (432)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~------~~~~L~~L~l~~n~l~---~l~~~~~ 366 (432)
+++|++|++++|.+. .++.. +..+++|+.|++++|.++.++.. +. ..+.++.|++.+|.+. ..|..+.
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 677777777777644 44443 34567777777777777775432 21 2467888999998876 2345677
Q ss_pred CCCCCCeeeccCCC
Q 042875 367 QLSRLCSLDLRRCN 380 (432)
Q Consensus 367 ~l~~L~~L~l~~~~ 380 (432)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 78888889888874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.9e-26 Score=211.27 Aligned_cols=284 Identities=15% Similarity=0.194 Sum_probs=165.5
Q ss_pred hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCce
Q 042875 61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPV 139 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 139 (432)
+++.++++++.++.+|..+ .++|++|++++|.++.+ .+..+..+++|++|++++|......+ .+..+++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISEL-------RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCcc-------CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 5677777777776666554 25677777777776642 23456777777777777766554434 345566777
Q ss_pred EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc-
Q 042875 140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE- 218 (432)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 218 (432)
+|++++|.+. .++. .+. ++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 106 ~L~L~~n~l~-~l~~--------------------~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 106 KLYISKNHLV-EIPP--------------------NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp EEECCSSCCC-SCCS--------------------SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred EEECCCCcCC-ccCc--------------------ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence 7777666544 2222 211 344444444444433333334445555555555544421
Q ss_pred -cchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccC
Q 042875 219 -RFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVAD 296 (432)
Q Consensus 219 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 296 (432)
..+..+..+ +|++|++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 233334444 56666666666665554332 566666666666655555556666777777777776664443 5666
Q ss_pred CCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhc------CCCCCEEEeeCCCCc--c-cChhcc
Q 042875 297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAY------LSSLKSLDLRGNNFE--S-LPASIK 366 (432)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~------~~~L~~L~l~~n~l~--~-l~~~~~ 366 (432)
+++|++|++++|.+. .+|.. +..+++|+.|++++|.++.++.. +.. .++++.|++++|.+. . .|..+.
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 677777777776644 44443 34567777777777777764432 221 467888888888776 3 345677
Q ss_pred CCCCCCeeeccCCC
Q 042875 367 QLSRLCSLDLRRCN 380 (432)
Q Consensus 367 ~l~~L~~L~l~~~~ 380 (432)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 78888888888775
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.4e-27 Score=215.00 Aligned_cols=210 Identities=20% Similarity=0.266 Sum_probs=139.4
Q ss_pred cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCC
Q 042875 173 PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLP 251 (432)
Q Consensus 173 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~ 251 (432)
|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..++
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 344444555555555555554455555555555555555555555455555555556666666665555 4555555555
Q ss_pred -CccEEeecCCCCCCccccccCCccccccccccccccc-ccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875 252 -GLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS-QLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY 329 (432)
Q Consensus 252 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (432)
+|+.|++++|.+.+.+|..+..+. |++|++++|.+. ..+..+..+++|+.|++++|.+....+. +..+++|++|+
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~ 250 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLD 250 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEE
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEE
Confidence 566666666655555555555554 666666666665 4445566677777777777765544443 45678899999
Q ss_pred eeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccCCCCCcccC
Q 042875 330 IMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRRCNMLQSLP 386 (432)
Q Consensus 330 l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~ 386 (432)
+++|.++. +|..+..+++|+.|++++|+++ .+|.. ..+++|+.+++.+|+.....|
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999984 8888999999999999999998 66665 889999999999998554433
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.5e-25 Score=205.25 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=217.9
Q ss_pred CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCCCCCccE
Q 042875 83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQISGKITR 161 (432)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 161 (432)
+++.++++++.++. +|..+. ++++.|++++|...+..+ .+..+++|++|++++|.+.
T Consensus 32 ~l~~l~~~~~~l~~--------lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------ 89 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--------VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------ 89 (330)
T ss_dssp ETTEEECTTSCCCS--------CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------
T ss_pred CCeEEEecCCCccc--------cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------
Confidence 68888888888765 444332 578888888876655433 4566788888888777654
Q ss_pred EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT 241 (432)
Q Consensus 162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (432)
...|..+..+++|++|++++|.+. .++..+. ++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus 90 --------~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 90 --------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp --------CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred --------eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 223567888999999999998765 4554443 79999999999888777778999999999999999987
Q ss_pred ---ccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchh
Q 042875 242 ---ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRS 317 (432)
Q Consensus 242 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (432)
..+..+..+++|+.|++++|.+.. +|..+. ++|++|++++|.+..+ +..+..+++|++|++++|.+.+..+ .
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 234 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-G 234 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-T
T ss_pred ccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-h
Confidence 345678889999999999987654 554443 8999999999999855 5778899999999999998655333 3
Q ss_pred hhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh-cc------CCCCCCeeeccCCCCCc--ccCC-
Q 042875 318 LLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IK------QLSRLCSLDLRRCNMLQ--SLPA- 387 (432)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-~~------~l~~L~~L~l~~~~~~~--~~~~- 387 (432)
.+..+++|+.|++++|.+..+|..+..+++|++|++++|.++.++.. +. ....++.+++.+|++.. ..|.
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 45678999999999999999999999999999999999999977643 22 34788999999999743 2222
Q ss_pred --CCCCccEEeccCCC
Q 042875 388 --LPLCLKYLHLTGCN 401 (432)
Q Consensus 388 --~~~~L~~L~l~~c~ 401 (432)
....++.+++.+|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 23568888888763
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=9.2e-29 Score=245.01 Aligned_cols=364 Identities=15% Similarity=0.104 Sum_probs=216.4
Q ss_pred cccccceeeeeccccccccccccccCCccccc-hhhhcceeecCCCC-CC--CCCCCC-CCCCceeeeeccccccccCCC
Q 042875 26 TNMSNLRLLKFYVPKFYEIERFPMQLPNGLEY-LPEKLRYLHWDTYP-LR--ILPSNF-KPKNLVELNLRFSKVEQPWEG 100 (432)
Q Consensus 26 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~-l~~~L~~L~l~~~~-~~--~l~~~~-~~~~L~~L~l~~~~l~~~~~~ 100 (432)
..+++|++|++++|.+.+ ..+..+.. ++.+|++|++++|. +. .++... ++++|++|++++|.+++....
T Consensus 109 ~~~~~L~~L~L~~~~i~~------~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSD------LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHCTTCCEEEEESCBCCH------HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred hhCCCCCeEEeeccEecH------HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence 378999999999998765 33333433 44349999998875 22 222222 778999999999887643211
Q ss_pred cccccCCcccCcccCceEeccCCccCC----cCCC-CCCCCCceEEEecCcccccccC---CCCCCccEEEeccccc---
Q 042875 101 EKACVPSSIQNFKYLSALSFEGCKSLR----SFPS-NLHFVCPVTINFSYCVTLIEFP---QISGKITRLYLDQSAI--- 169 (432)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~-~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~--- 169 (432)
. ++.....+++|++|+++++.... .++. +..+++|+.|++++|.... ++ ...++|+.|.+.....
T Consensus 183 ~---l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 183 W---LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp H---HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT
T ss_pred H---HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc
Confidence 1 23334677888889888876641 2222 3357888899888876553 22 2445777777764221
Q ss_pred -ccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc-chHhhhcCCCCCeeeecccccc--ccCc
Q 042875 170 -EEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER-FPEILEKMEHLKRINLDGTAIT--ELPS 245 (432)
Q Consensus 170 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~--~~~~ 245 (432)
...+..+..+++|+.++++++ ....++..+..+++|++|++++|.+.+. +...+..+++|++|+++ +.+. .++.
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~ 336 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV 336 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHH
T ss_pred hHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHH
Confidence 223345666777777777764 2344555666677788888877764333 22345677777777777 3333 3333
Q ss_pred ccCCCCCccEEeecC----------CCCCCc--cccccCCccccccccccccccc-ccCcccc-CCCCCcEEeccC---C
Q 042875 246 SFENLPGLEELFVSD----------CSKLDK--LPDNIGNLESLRHISAAGSAIS-QLPSSVA-DSNALLILDFSR---C 308 (432)
Q Consensus 246 ~~~~l~~L~~L~l~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~---~ 308 (432)
....+++|++|++++ |..... +......+++|++|+++.+.+. .....+. .+++|++|++++ +
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 345567777777773 333221 1122234677777777666665 2222233 367777777753 2
Q ss_pred CCCCCCc-----hhhhcCCCCccEEEeeccC--CCC-Cchhh-hcCCCCCEEEeeCCCCc--ccChhccCCCCCCeeecc
Q 042875 309 KGLVSLP-----RSLLLGLSSLGLLYIMNCA--VME-IPQEI-AYLSSLKSLDLRGNNFE--SLPASIKQLSRLCSLDLR 377 (432)
Q Consensus 309 ~~~~~~~-----~~~~~~~~~L~~L~l~~~~--~~~-~~~~~-~~~~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~ 377 (432)
...+..| ...+.++++|+.|++++|. ++. .+..+ ..+++|+.|++++|+++ .++..+..+++|++|+++
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 2233221 1123456777777776543 333 22223 34677777777777776 344555667777777777
Q ss_pred CCCCCcc-cC---CCCCCccEEeccCCC
Q 042875 378 RCNMLQS-LP---ALPLCLKYLHLTGCN 401 (432)
Q Consensus 378 ~~~~~~~-~~---~~~~~L~~L~l~~c~ 401 (432)
+|++... ++ ..+++|++|++++|.
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 7774322 11 234577777777775
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.2e-25 Score=206.09 Aligned_cols=281 Identities=15% Similarity=0.135 Sum_probs=215.9
Q ss_pred CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccccccCCCCCCccE
Q 042875 83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTLIEFPQISGKITR 161 (432)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 161 (432)
+++.++++++.++. +|..+ .++++.|++++|......+ .+..+++|++|++++|.+.
T Consensus 34 ~l~~l~~~~~~l~~--------ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--------VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------ 91 (332)
T ss_dssp ETTEEECCSSCCSS--------CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------
T ss_pred cCCEEECCCCCccc--------cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------
Confidence 68888888888765 45444 2678888888876554434 4566777888877777544
Q ss_pred EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT 241 (432)
Q Consensus 162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (432)
...|..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus 92 --------~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 92 --------KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp --------EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred --------ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 223567888999999999998765 4554443 89999999999887666667899999999999999987
Q ss_pred ---ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchh
Q 042875 242 ---ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRS 317 (432)
Q Consensus 242 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (432)
..+..+..+ +|+.|++++|.+.. +|..+. ++|++|++++|.+..++ ..+..+++|++|++++|.+... +..
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~ 235 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENG 235 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTT
T ss_pred cCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-Chh
Confidence 334556666 99999999997665 555443 79999999999998655 6788999999999999986554 333
Q ss_pred hhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh-ccC------CCCCCeeeccCCCCC--cccCC-
Q 042875 318 LLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IKQ------LSRLCSLDLRRCNML--QSLPA- 387 (432)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-~~~------l~~L~~L~l~~~~~~--~~~~~- 387 (432)
.+..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++.. +.. ...|+.+++++|+.. +..+.
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 46688999999999999999999999999999999999999976532 222 467999999999975 33332
Q ss_pred --CCCCccEEeccCCC
Q 042875 388 --LPLCLKYLHLTGCN 401 (432)
Q Consensus 388 --~~~~L~~L~l~~c~ 401 (432)
.+++|+.+++.+|.
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 34678999998875
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=7.9e-28 Score=238.32 Aligned_cols=393 Identities=13% Similarity=0.070 Sum_probs=272.4
Q ss_pred CchhhcccccceeeeeccccccccccccccCCcccc------------chhhhcceeecCCCCCCCCC-CCC-C-CCC-c
Q 042875 21 DPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLE------------YLPEKLRYLHWDTYPLRILP-SNF-K-PKN-L 84 (432)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~------------~l~~~L~~L~l~~~~~~~l~-~~~-~-~~~-L 84 (432)
.+..+.++++|++|+++++.... ....+|..++ .++ +|++|+++++.++... ..+ . +++ |
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~L 140 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAA---MFNLIPENWGGYVTPWVTEISNNLR-QLKSVHFRRMIVSDLDLDRLAKARADDL 140 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGG---GGTCSCTTSCCBCHHHHHHHHHHCT-TCCEEEEESCBCCHHHHHHHHHHHGGGC
T ss_pred hHHHHHhCCCCeEEEecCCcchh---hcccccccccccchHHHHHHHhhCC-CCCeEEeeccEecHHHHHHHHHhccccC
Confidence 34567889999999998864321 0012222222 565 8999999988664221 111 2 344 9
Q ss_pred eeeeecccc-ccccCCCcccccCCcccCcccCceEeccCCccCCc----CC-CCCCCCCceEEEecCcccc----cccC-
Q 042875 85 VELNLRFSK-VEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS----FP-SNLHFVCPVTINFSYCVTL----IEFP- 153 (432)
Q Consensus 85 ~~L~l~~~~-l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~- 153 (432)
++|+++++. ++. .. ++.....+++|++|++++|...+. ++ ....+++|++|+++++... ..++
T Consensus 141 ~~L~L~~~~~~~~---~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 141 ETLKLDKCSGFTT---DG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp CEEEEESCEEEEH---HH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred cEEECcCCCCcCH---HH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 999999876 221 11 333345889999999999876443 22 1234789999999988765 2222
Q ss_pred --CCCCCccEEEecccccccccccccCCCCCCEEeecccccc---ccccchhcCCCCccEEEecCccCcccchHhhhcCC
Q 042875 154 --QISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRL---KRISTRFCKLRSLVDLFVNGCLNLERFPEILEKME 228 (432)
Q Consensus 154 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 228 (432)
...++|+.|++.++.+..++..+..+++|+.|+++.+... ......+..+++|+.+.+.++ ....++..+..++
T Consensus 215 ~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA 293 (592)
T ss_dssp HHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG
T ss_pred HHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC
Confidence 2457899999999988888888888999999999864332 233345677889999999874 3455677778899
Q ss_pred CCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccc-----------cccc--ccCcc
Q 042875 229 HLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG-----------SAIS--QLPSS 293 (432)
Q Consensus 229 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------~~~~--~~~~~ 293 (432)
+|++|+++++.++ .+...+..+++|++|++.++.....++.....+++|++|++++ +.+. .+...
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 9999999998876 3334468899999999984322223333345678999999993 4554 34444
Q ss_pred ccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee----ccCCCCC------chhhhcCCCCCEEEeeCCC--Cc-c
Q 042875 294 VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM----NCAVMEI------PQEIAYLSSLKSLDLRGNN--FE-S 360 (432)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~------~~~~~~~~~L~~L~l~~n~--l~-~ 360 (432)
...+++|++|+++.+...+.....+...+++|+.|+++ .+.++.. +..+..+++|+.|++++|. ++ .
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 56689999999977776555555544458899999997 4456653 3346779999999998754 55 2
Q ss_pred cChhc-cCCCCCCeeeccCCCCCc-ccC---CCCCCccEEeccCCCCccc--cC---CCCCccceecccccccccc
Q 042875 361 LPASI-KQLSRLCSLDLRRCNMLQ-SLP---ALPLCLKYLHLTGCNMLRS--LP---ELPLCLQELDATNCNRLQS 426 (432)
Q Consensus 361 l~~~~-~~l~~L~~L~l~~~~~~~-~~~---~~~~~L~~L~l~~c~~l~~--l~---~~~~~L~~L~l~~c~~l~~ 426 (432)
.+..+ ..+++|++|++++|++.. .++ ..+++|++|++++|+ ++. ++ ..+++|++|++++|+ +++
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 23333 458999999999998654 222 456899999999998 442 22 257899999999986 654
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.8e-25 Score=199.34 Aligned_cols=218 Identities=22% Similarity=0.344 Sum_probs=112.4
Q ss_pred CCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875 157 GKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD 236 (432)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (432)
.+++.|++.++.+..+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3455555555555556666666666666666666554 55555666666666666665544 455556666666666666
Q ss_pred ccccc-ccCcccCC---------CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEecc
Q 042875 237 GTAIT-ELPSSFEN---------LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFS 306 (432)
Q Consensus 237 ~~~~~-~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 306 (432)
+|... .+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+..++..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 54333 34433322 445555555554433 44444444555555555555554444444455555555555
Q ss_pred CCCCCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCc-ccChhccCCCCCCeeeccC
Q 042875 307 RCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLSRLCSLDLRR 378 (432)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~~L~~L~l~~ 378 (432)
+|...+.++.. +..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+. .+|..+..+++|+.+.+..
T Consensus 238 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 238 GCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 54444443332 2344445555555544333 4444445555555555554433 4455555555555544443
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.1e-24 Score=198.70 Aligned_cols=233 Identities=25% Similarity=0.351 Sum_probs=167.4
Q ss_pred cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC-CCCCceeeeeccccccccCCCcccccC
Q 042875 28 MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF-KPKNLVELNLRFSKVEQPWEGEKACVP 106 (432)
Q Consensus 28 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~ 106 (432)
.++++.|++++|.+. .+|..++.++ +|++|++++|.++.+|..+ ++++|++|++++|.++. +|
T Consensus 80 ~~~l~~L~L~~n~l~-------~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~--------lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-------QFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA--------LP 143 (328)
T ss_dssp STTCCEEEEESSCCS-------SCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC--------CC
T ss_pred ccceeEEEccCCCch-------hcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc--------Cc
Confidence 366777777777775 4666666665 7777777777776666654 66777777777776653 56
Q ss_pred CcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEe
Q 042875 107 SSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186 (432)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 186 (432)
..++.+++|++|++++|...+.+|.... ...+. .....+.+|+.|++.+|.+..+|..+..+++|++|+
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~-----~~~~~------~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLA-----STDAS------GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSE-----EEC-C------CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHh-----hccch------hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE
Confidence 6667777777777777666655553221 00000 000124456666666666667777788888888888
Q ss_pred eccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc-ccCcccCCCCCccEEeecCCCCCC
Q 042875 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT-ELPSSFENLPGLEELFVSDCSKLD 265 (432)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 265 (432)
+++|.+.+ ++..+..+++|+.|++++|...+.+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+..+
T Consensus 213 L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 213 IRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp EESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred ccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 88887664 5666888888889999888888888888888888999998887665 677778888999999999998888
Q ss_pred ccccccCCccccccccccccccc
Q 042875 266 KLPDNIGNLESLRHISAAGSAIS 288 (432)
Q Consensus 266 ~~~~~~~~l~~L~~L~l~~~~~~ 288 (432)
.+|..+.++++|+.+++..+.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hccHHHhhccCceEEeCCHHHHH
Confidence 99988889999988888766544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=197.09 Aligned_cols=242 Identities=18% Similarity=0.172 Sum_probs=145.0
Q ss_pred CccEEEecccccccccc-cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875 158 KITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD 236 (432)
Q Consensus 158 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (432)
+++.|++.++.+..++. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555555544 56666777777777766555555556666777777777666554444446667777777777
Q ss_pred cccccccCc--ccCCCCCccEEeecCCCCCCc-cccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCC
Q 042875 237 GTAITELPS--SFENLPGLEELFVSDCSKLDK-LPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLV 312 (432)
Q Consensus 237 ~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 312 (432)
+|.++.++. .+..+++|++|++++|..... .+..+..+++|++|++++|.+... +..+..+++|++|++++|.. .
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~ 211 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-I 211 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-T
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-c
Confidence 776666654 566667777777776643332 344566667777777777766633 55666667777777776663 3
Q ss_pred CCchhhhcCCCCccEEEeeccCCCCCch----hhhcCCCCCEEEeeCCCCc-----ccChhccCCCCCCeeeccCCCCCc
Q 042875 313 SLPRSLLLGLSSLGLLYIMNCAVMEIPQ----EIAYLSSLKSLDLRGNNFE-----SLPASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~-----~l~~~~~~l~~L~~L~l~~~~~~~ 383 (432)
.++...+..+++|+.|++++|.+..++. .....+.++.++++++.++ .+|..+..+++|++|++++|++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 4444444456667777777776665321 1223455666666666555 34555666666666666666644
Q ss_pred ccCC----CCCCccEEeccCCC
Q 042875 384 SLPA----LPLCLKYLHLTGCN 401 (432)
Q Consensus 384 ~~~~----~~~~L~~L~l~~c~ 401 (432)
.+|. .+++|++|++.+|+
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHHhcCCCCCEEEeeCCC
Confidence 3432 23456666666664
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.6e-23 Score=201.46 Aligned_cols=261 Identities=18% Similarity=0.230 Sum_probs=155.9
Q ss_pred hhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCce
Q 042875 60 EKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPV 139 (432)
Q Consensus 60 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 139 (432)
.+++.|+++++.++.+|..+. ++|++|++++|.++. +|. .+++|++|++++|.+. .+|. .+++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~--------lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS--------LPA---LPPELRTLEVSGNQLT-SLPV--LPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC--------CCC---CCTTCCEEEECSCCCS-CCCC--CCTTCC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC--------CCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCC
Confidence 368999999999999988765 799999999999875 554 5688999999987654 4555 677888
Q ss_pred EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875 140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219 (432)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 219 (432)
+|++++|.+. .++..+.+|+.|++.+|.+..+|.. +++|++|++++|.+.+ ++. ...+|+.|++++|.+..
T Consensus 105 ~L~Ls~N~l~-~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 105 ELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp EEEECSCCCC-CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred EEECcCCcCC-CCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 8888887655 3444556666666666666666553 2566666666664432 221 23445555555543332
Q ss_pred chHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCC
Q 042875 220 FPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNA 299 (432)
Q Consensus 220 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (432)
+| ..+++|+.|++++|.++.+|.. +++|+.|+ +++|.+..++.. +++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~------------------------L~~N~l~~l~~~---~~~ 222 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLW------------------------AYNNRLTSLPAL---PSG 222 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEE------------------------CCSSCCSSCCCC---CTT
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEE------------------------CcCCcccccCCC---CCC
Confidence 22 2334455555555554444321 23444444 444444433321 244
Q ss_pred CcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875 300 LLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC 379 (432)
Q Consensus 300 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~ 379 (432)
|+.|++++|.+.. ++ ..+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus 223 L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSC
T ss_pred CCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCC
Confidence 5555555554322 22 134556666666666665554 445666666666666666666666666666666666
Q ss_pred CCCccc
Q 042875 380 NMLQSL 385 (432)
Q Consensus 380 ~~~~~~ 385 (432)
++.+..
T Consensus 295 ~l~~~~ 300 (622)
T 3g06_A 295 PLSERT 300 (622)
T ss_dssp CCCHHH
T ss_pred CCCCcC
Confidence 654433
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=5.1e-24 Score=190.82 Aligned_cols=219 Identities=22% Similarity=0.286 Sum_probs=134.0
Q ss_pred EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc-c
Q 042875 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA-I 240 (432)
Q Consensus 162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~ 240 (432)
++..++++..+|..+ .+++++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|. +
T Consensus 16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 344444444454433 2456666666655544444455556666666666655544445555666666666666664 5
Q ss_pred ccc-CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCCCCchhh
Q 042875 241 TEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLVSLPRSL 318 (432)
Q Consensus 241 ~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~ 318 (432)
+.+ +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++. .+..+++|++|++++|.+. .++...
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHH
Confidence 544 4455666666666666666555555556666666666666666664443 3556666777777766533 333333
Q ss_pred hcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCCCc
Q 042875 319 LLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 319 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~ 383 (432)
+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 4566777777777777776 36667777777777777777776653 46777777777777777644
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.3e-23 Score=190.27 Aligned_cols=242 Identities=22% Similarity=0.251 Sum_probs=164.1
Q ss_pred eEEEecCcccccccCC-CCCCccEEEeccccccccccc-ccCCCCCCEEeeccccccc--cccchhcCCCCccEEEecCc
Q 042875 139 VTINFSYCVTLIEFPQ-ISGKITRLYLDQSAIEEVPSS-IECLTDLEVLDLRDCKRLK--RISTRFCKLRSLVDLFVNGC 214 (432)
Q Consensus 139 ~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 214 (432)
+.++.+++... .+|. ...+++.|++.++.+..+|.. +..+++|++|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCS-SCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcc-cCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45566555433 4444 334788888888888777764 5778888888888876543 23455666788888888877
Q ss_pred cCcccchHhhhcCCCCCeeeeccccccccCc--ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc--c
Q 042875 215 LNLERFPEILEKMEHLKRINLDGTAITELPS--SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ--L 290 (432)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~ 290 (432)
.+. .++..+..+++|++|++++|.++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 554 355556777888888888887776553 56777788888888877766666667777788888888777763 5
Q ss_pred CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCc-ccChhccCC
Q 042875 291 PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFE-SLPASIKQL 368 (432)
Q Consensus 291 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~-~l~~~~~~l 368 (432)
+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.++ ..|..+..+
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 6667777777777777776444323 234466777777777777776433 4666777777777777776 344555666
Q ss_pred -CCCCeeeccCCCCCc
Q 042875 369 -SRLCSLDLRRCNMLQ 383 (432)
Q Consensus 369 -~~L~~L~l~~~~~~~ 383 (432)
++|++|++++|++..
T Consensus 247 ~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 247 PSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTCCEEC
T ss_pred hccCCEEEccCCCeec
Confidence 377777777776543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=4.4e-24 Score=193.32 Aligned_cols=166 Identities=25% Similarity=0.317 Sum_probs=89.4
Q ss_pred ccccccccCCCCCCEEeecccccccccc-chhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccc--cCcc
Q 042875 170 EEVPSSIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITE--LPSS 246 (432)
Q Consensus 170 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~ 246 (432)
..++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++. .|..
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 3344445556666666666665544322 345556666666666665554455555556666666666665553 4555
Q ss_pred cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCcc
Q 042875 247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLG 326 (432)
Q Consensus 247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 326 (432)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++. ..+..+++|+
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~ 226 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT------------------------FPYKCLNSLQ 226 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS------------------------GGGTTCTTCC
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh------------------------hhccCcccCC
Confidence 5556666666666655544444444455555555555554443322 1123445555
Q ss_pred EEEeeccCCCC-CchhhhcCC-CCCEEEeeCCCCc
Q 042875 327 LLYIMNCAVME-IPQEIAYLS-SLKSLDLRGNNFE 359 (432)
Q Consensus 327 ~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~~n~l~ 359 (432)
.|++++|.+.. .+..+..++ +|+.|++++|.++
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555555554 333444443 6666666666655
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=9.4e-23 Score=199.86 Aligned_cols=264 Identities=19% Similarity=0.210 Sum_probs=200.5
Q ss_pred ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCc
Q 042875 29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSS 108 (432)
Q Consensus 29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 108 (432)
.+++.|+++++.+. .+|..+. + +|++|++++|.++.+|. .+++|++|++++|.++. +|.
T Consensus 40 ~~l~~L~ls~n~L~-------~lp~~l~--~-~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--------lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLT-------TLPDCLP--A-HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--------LPV- 98 (622)
T ss_dssp HCCCEEECCSSCCS-------CCCSCCC--T-TCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--------CCC-
T ss_pred CCCcEEEecCCCcC-------ccChhhC--C-CCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--------CCC-
Confidence 46999999999997 5676654 4 99999999999999988 67899999999999875 554
Q ss_pred ccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeec
Q 042875 109 IQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLR 188 (432)
Q Consensus 109 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 188 (432)
.+++|++|++++|.... ++. .+++|+.|++++|.+. .+|..+++|+.|++++|.+..+|.. +++|+.|+++
T Consensus 99 --~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~ 169 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAY 169 (622)
T ss_dssp --CCTTCCEEEECSCCCCC-CCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred --CCCCCCEEECcCCcCCC-CCC--CCCCcCEEECCCCCCC-cCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECC
Confidence 67899999999986544 555 6789999999999765 5777889999999999999988763 4789999999
Q ss_pred cccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccc
Q 042875 189 DCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLP 268 (432)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 268 (432)
+|.+.. ++ ..+++|+.|++++|.+.+ +|. ..++|+.|++++|.++.+|.. +++|+.|++++|.+.+ +|
T Consensus 170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP 237 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC
T ss_pred CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC
Confidence 987655 44 457899999999987654 443 357899999999999877643 4677778887775543 33
Q ss_pred cccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCC
Q 042875 269 DNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSL 348 (432)
Q Consensus 269 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 348 (432)
..+++|++|++++|.+..+|. .+++|+.|++++|.++.+|..+..+++|
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~----------------------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM----------------------------LPSGLLSLSVYRNQLTRLPESLIHLSSE 286 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC----------------------------CCTTCCEEECCSSCCCSCCGGGGGSCTT
T ss_pred ---CCCCcCcEEECCCCCCCcCCc----------------------------ccccCcEEeCCCCCCCcCCHHHhhcccc
Confidence 233455555555554443332 3456777777777777777777777888
Q ss_pred CEEEeeCCCCc-ccChhc
Q 042875 349 KSLDLRGNNFE-SLPASI 365 (432)
Q Consensus 349 ~~L~l~~n~l~-~l~~~~ 365 (432)
+.|++++|.++ ..|..+
T Consensus 287 ~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CEEECCSCCCCHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHH
Confidence 88888888777 334433
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.2e-26 Score=228.02 Aligned_cols=334 Identities=12% Similarity=0.092 Sum_probs=156.1
Q ss_pred hcceeecCCCCCCCC--CCCC-CCCCceeeeeccc-cccccCCCcccccCCcccCcccCceEeccCCccCCc----CCCC
Q 042875 61 KLRYLHWDTYPLRIL--PSNF-KPKNLVELNLRFS-KVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRS----FPSN 132 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l--~~~~-~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~ 132 (432)
+|++|+++++.++.. .... .+++|++|++++| .++.. . ++..+.++++|++|++++|...+. ++.+
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~---l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---G---LAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---H---HHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---H---HHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 566666665544311 1111 3556666666655 33210 1 222233555666666665553321 1111
Q ss_pred -CCCCCceEEEecCcc--ccc----ccCCCCCCccEEEeccc-ccccccccccCCCCCCEEeecccc-------------
Q 042875 133 -LHFVCPVTINFSYCV--TLI----EFPQISGKITRLYLDQS-AIEEVPSSIECLTDLEVLDLRDCK------------- 191 (432)
Q Consensus 133 -~~~~~L~~L~l~~~~--~~~----~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~------------- 191 (432)
..+++|++|++++|. ... .+....++|+.|++.++ ....++..+..+++|+.|++..+.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 135566666665554 110 01112345556665554 233344444445555555543321
Q ss_pred -----------------ccccccchhcCCCCccEEEecCccCccc-chHhhhcCCCCCeeeecccccc--ccCcccCCCC
Q 042875 192 -----------------RLKRISTRFCKLRSLVDLFVNGCLNLER-FPEILEKMEHLKRINLDGTAIT--ELPSSFENLP 251 (432)
Q Consensus 192 -----------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~ 251 (432)
....++..+..+++|+.|++++|.+... +...+..+++|++|+++++ +. .++.....++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 1112333333456666666666653322 2223445666666666665 33 2222223456
Q ss_pred CccEEeecCC--------C-CCCcccccc-CCccccccccccccccc--ccCccccCCCCCcEEecc-----CCCCCCCC
Q 042875 252 GLEELFVSDC--------S-KLDKLPDNI-GNLESLRHISAAGSAIS--QLPSSVADSNALLILDFS-----RCKGLVSL 314 (432)
Q Consensus 252 ~L~~L~l~~~--------~-~~~~~~~~~-~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~-----~~~~~~~~ 314 (432)
+|++|++.++ . ..+.....+ ..+++|++|.+..+.+. .+......+++|++|+++ +|...+..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 6666666332 1 111111111 23566666666555554 111222345667777666 22223322
Q ss_pred ch-----hhhcCCCCccEEEeeccCCCC-Cchhhhc-CCCCCEEEeeCCCCc--ccChhccCCCCCCeeeccCCCCCccc
Q 042875 315 PR-----SLLLGLSSLGLLYIMNCAVME-IPQEIAY-LSSLKSLDLRGNNFE--SLPASIKQLSRLCSLDLRRCNMLQSL 385 (432)
Q Consensus 315 ~~-----~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-~~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~ 385 (432)
+. ..+..+++|+.|++++ .++. .+..+.. +++|+.|++++|.++ .+......+++|++|++++|++....
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 11 1233456677777755 3333 2233333 666777777777665 22222245667777777777652211
Q ss_pred ----CCCCCCccEEeccCCCC
Q 042875 386 ----PALPLCLKYLHLTGCNM 402 (432)
Q Consensus 386 ----~~~~~~L~~L~l~~c~~ 402 (432)
...+++|++|++++|+.
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhCCCCCEEeeeCCCC
Confidence 12345677777777654
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=193.92 Aligned_cols=274 Identities=14% Similarity=0.116 Sum_probs=162.5
Q ss_pred cccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceeeeeccccccccCCCccc
Q 042875 26 TNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVELNLRFSKVEQPWEGEKA 103 (432)
Q Consensus 26 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~ 103 (432)
-.|+.....+.+++.++ .+|..+. .+|++|+++++.++.++.. .++++|++|++++|.++.+
T Consensus 28 ~~C~~~~~c~~~~~~l~-------~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~------ 91 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-------SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI------ 91 (353)
T ss_dssp CEECTTSEEECCSTTCS-------SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE------
T ss_pred CCCCCCeEeeCCCCCcc-------ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc------
Confidence 35666667777777776 4565443 3788888888888877662 3788888888888888753
Q ss_pred ccCCcccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCC-----CCCCccEEEeccc-ccccc-ccc
Q 042875 104 CVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQ-----ISGKITRLYLDQS-AIEEV-PSS 175 (432)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-----~~~~L~~L~l~~~-~~~~~-~~~ 175 (432)
.+..+..+++|++|++++|......+. +..+++|++|++++|.+.. ++. .+++|+.|++.+| .+..+ +..
T Consensus 92 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 92 -EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred -CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 345578888888888888766543223 5668888888888876552 221 2345555555554 23333 234
Q ss_pred ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcc----cCCCC
Q 042875 176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSS----FENLP 251 (432)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~l~ 251 (432)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.++.++.. ....+
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 55566666666666655555555566666666666666554322222233456666666666655533210 11122
Q ss_pred CccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee
Q 042875 252 GLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM 331 (432)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 331 (432)
.++.++++++ .+.++.+..+|..+..+++|+.|++++|.+. .++...+..+++|+.|+++
T Consensus 250 ~l~~l~L~~~-------------------~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 250 LIKKFTFRNV-------------------KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCCEEEEESC-------------------BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred hhhccccccc-------------------cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEee
Confidence 3333333333 2333333345555666667777777766643 4555545566777777777
Q ss_pred ccCCCC
Q 042875 332 NCAVME 337 (432)
Q Consensus 332 ~~~~~~ 337 (432)
+|.+..
T Consensus 310 ~N~~~~ 315 (353)
T 2z80_A 310 TNPWDC 315 (353)
T ss_dssp SSCBCC
T ss_pred CCCccC
Confidence 776655
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=5.8e-25 Score=199.40 Aligned_cols=201 Identities=18% Similarity=0.187 Sum_probs=142.1
Q ss_pred CCCCCCEEeeccccccccccchh--cCCCCccEEEecCccCcccchHhhhcC-----CCCCeeeeccccccccC-cccCC
Q 042875 178 CLTDLEVLDLRDCKRLKRISTRF--CKLRSLVDLFVNGCLNLERFPEILEKM-----EHLKRINLDGTAITELP-SSFEN 249 (432)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~~~~ 249 (432)
.+++|++|++++|.+.+..|..+ ..+++|+.|++++|.+.+. |..+..+ ++|++|++++|+++.++ ..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56777788887777766666654 6777788888887766655 5555555 78888888888887655 56777
Q ss_pred CCCccEEeecCCCCCCc--ccccc--CCcccccccccccccccccC----ccccCCCCCcEEeccCCCCCCCCchhhhcC
Q 042875 250 LPGLEELFVSDCSKLDK--LPDNI--GNLESLRHISAAGSAISQLP----SSVADSNALLILDFSRCKGLVSLPRSLLLG 321 (432)
Q Consensus 250 l~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (432)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+...+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 88888888888876554 22233 66778888888887776332 223456778888888877666554333445
Q ss_pred CCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875 322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~ 382 (432)
+++|+.|++++|.++.+|..+. ++|++|++++|+++.+|. +..+++|++|++++|++.
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 6778888888888877776655 778888888888887765 777788888888887754
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=7.9e-23 Score=183.07 Aligned_cols=202 Identities=23% Similarity=0.321 Sum_probs=163.1
Q ss_pred CCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc-CcccchHhhhcCCCCCeee
Q 042875 157 GKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL-NLERFPEILEKMEHLKRIN 234 (432)
Q Consensus 157 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~ 234 (432)
.+++.|++.++.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 35566666666665555 357788999999999988777667788889999999999886 4444467788899999999
Q ss_pred ecccccccc-CcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCC
Q 042875 235 LDGTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLV 312 (432)
Q Consensus 235 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 312 (432)
+++|.++.+ +..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 999998865 5567888999999999988776666668889999999999999886665 47888999999999998655
Q ss_pred CCchhhhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCc
Q 042875 313 SLPRSLLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~ 359 (432)
..+. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 192 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHh-HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4444 35678999999999999999664 5888999999999999887
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=189.88 Aligned_cols=223 Identities=22% Similarity=0.263 Sum_probs=171.5
Q ss_pred CCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875 157 GKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235 (432)
Q Consensus 157 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (432)
.+++.|++.+|.+..++ ..+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 35666666666666554 46778888888888888877666677888888888888888766555556788888888888
Q ss_pred ccccccccCc-ccCCCCCccEEeecCCCCCCcccc-ccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCC
Q 042875 236 DGTAITELPS-SFENLPGLEELFVSDCSKLDKLPD-NIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVS 313 (432)
Q Consensus 236 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 313 (432)
++|.++.++. .+..+++|+.|++++|+....++. .+.++++|++|++++|.+..++ .+..+++|+.|++++|.+..
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~- 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA- 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE-
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc-
Confidence 8888886654 677888888998888766665554 5778888888998888888776 46778888888888887544
Q ss_pred CchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875 314 LPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~ 381 (432)
++...+..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.+|. .+..+++|++|++++|++
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 333346678888899988888888 45567788889999998888886654 457788888888888875
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=5e-22 Score=189.70 Aligned_cols=223 Identities=26% Similarity=0.283 Sum_probs=176.2
Q ss_pred CCccEEEecccccccc-cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875 157 GKITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235 (432)
Q Consensus 157 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (432)
.+++.|++.+|.+..+ +..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 3566666666666655 456788889999999998877766777888899999999988776656666788889999999
Q ss_pred ccccccccCc-ccCCCCCccEEeecCCCCCCcccc-ccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCC
Q 042875 236 DGTAITELPS-SFENLPGLEELFVSDCSKLDKLPD-NIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVS 313 (432)
Q Consensus 236 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 313 (432)
++|.++.++. .+..+++|+.|++++|+....++. .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCccc
Confidence 9998886654 677888999999998766666654 4778889999999999888775 467788899999998886554
Q ss_pred CchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875 314 LPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~ 381 (432)
.+. .+..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.+|. .+..+++|++|++++|+.
T Consensus 234 ~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 234 RPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred Ccc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 443 46678889999999998888 45667888899999999998887664 457788899999998875
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6.7e-22 Score=188.16 Aligned_cols=238 Identities=18% Similarity=0.225 Sum_probs=200.8
Q ss_pred ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875 159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT 238 (432)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (432)
.+.++..+.++..+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3456666677788888775 68999999999988777788999999999999999887777788999999999999999
Q ss_pred cccccCc-ccCCCCCccEEeecCCCCCCccccccCCcccccccccccc-cccccCc-cccCCCCCcEEeccCCCCCCCCc
Q 042875 239 AITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AISQLPS-SVADSNALLILDFSRCKGLVSLP 315 (432)
Q Consensus 239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 315 (432)
.++.++. .+..+++|++|++++|.+....+..+..+++|++|+++++ .+..++. .+..+++|++|++++|.+. .++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 9997765 5889999999999999887666667889999999999985 4555444 6788999999999999854 444
Q ss_pred hhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---CCC
Q 042875 316 RSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---LPL 390 (432)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~ 390 (432)
. +..+++|+.|++++|.+.. .+..+..+++|+.|++++|+++.+ +..+..+++|++|++++|++.+..+. .++
T Consensus 202 ~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 N--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 3 5578999999999999999 477889999999999999999955 56788999999999999987654443 347
Q ss_pred CccEEeccCCC
Q 042875 391 CLKYLHLTGCN 401 (432)
Q Consensus 391 ~L~~L~l~~c~ 401 (432)
+|+.|++.+|+
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 89999999986
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=9.4e-24 Score=191.89 Aligned_cols=238 Identities=13% Similarity=0.132 Sum_probs=180.0
Q ss_pred CCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875 157 GKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235 (432)
Q Consensus 157 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (432)
++++.|++++|.+..++ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ...++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEEC
Confidence 34555555555555544 467788889999998887765443 77888899999988765432 23478899999
Q ss_pred ccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccc-cCCCCCcEEeccCCCCCCC
Q 042875 236 DGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSV-ADSNALLILDFSRCKGLVS 313 (432)
Q Consensus 236 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~ 313 (432)
++|.++.++. ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..++ ..+ ..+++|++|++++|.+...
T Consensus 107 ~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 9988886553 34678999999998887776767788899999999999887433 333 4678999999999885443
Q ss_pred CchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC-cccCC---CC
Q 042875 314 LPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML-QSLPA---LP 389 (432)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~---~~ 389 (432)
+. ...+++|++|++++|.++.++..+..+++|+.|++++|.++.+|..+..+++|++|++++|++. ..++. .+
T Consensus 185 -~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 185 -KG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp -EC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred -cc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 32 2247889999999999999887888899999999999999988888888999999999999876 33432 34
Q ss_pred CCccEEeccCCCCcccc
Q 042875 390 LCLKYLHLTGCNMLRSL 406 (432)
Q Consensus 390 ~~L~~L~l~~c~~l~~l 406 (432)
+.|+.+++.+|+.++..
T Consensus 262 ~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred ccceEEECCCchhccCC
Confidence 56778888776655543
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=8.3e-22 Score=188.20 Aligned_cols=238 Identities=20% Similarity=0.202 Sum_probs=199.7
Q ss_pred ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875 159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT 238 (432)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (432)
...++..+.++..+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3455666666777887664 68999999999988877888999999999999999888777788999999999999999
Q ss_pred cccccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccc-cccccCc-cccCCCCCcEEeccCCCCCCCCc
Q 042875 239 AITELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGS-AISQLPS-SVADSNALLILDFSRCKGLVSLP 315 (432)
Q Consensus 239 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 315 (432)
.++.++.. +..+++|++|++++|.+....+..+..+++|++|+++++ .+..++. .+..+++|++|++++|.+.. ++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence 99977654 788999999999999887655667889999999999984 5555544 57889999999999998654 34
Q ss_pred hhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCccc-ChhccCCCCCCeeeccCCCCCcccCC---CCC
Q 042875 316 RSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFESL-PASIKQLSRLCSLDLRRCNMLQSLPA---LPL 390 (432)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~ 390 (432)
. +..+++|+.|++++|.+.. .|..+..+++|+.|++++|+++.+ +..+..+++|++|++++|++.+..+. .++
T Consensus 213 ~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 N--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 2 5578999999999999999 577889999999999999999955 56788999999999999987654443 347
Q ss_pred CccEEeccCCC
Q 042875 391 CLKYLHLTGCN 401 (432)
Q Consensus 391 ~L~~L~l~~c~ 401 (432)
+|+.|++.+|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 89999999986
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=2.7e-25 Score=220.26 Aligned_cols=365 Identities=14% Similarity=0.104 Sum_probs=240.4
Q ss_pred hcccccceeeeeccccccccccccccCCcccc-chhhhcceeecCCC-CCCC--CCCCC-CCCCceeeeeccccccccCC
Q 042875 25 FTNMSNLRLLKFYVPKFYEIERFPMQLPNGLE-YLPEKLRYLHWDTY-PLRI--LPSNF-KPKNLVELNLRFSKVEQPWE 99 (432)
Q Consensus 25 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~-~~~~--l~~~~-~~~~L~~L~l~~~~l~~~~~ 99 (432)
...+++|++|++++|.+.+ ..+..+. .++ +|++|++++| .++. ++... ++++|++|++++|.+++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~------~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTD------DCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HHHCTTCCEEEEESCBCCH------HHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred HHhCCCCCeEEeeCcEEcH------HHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 4578999999999998875 3333443 465 9999999988 5543 44444 78899999999998775432
Q ss_pred CcccccCCcccCcccCceEeccCCcc-CC--cCCC-CCCCCCceEEEecCcccccccCC---CCCCccEEEeccc-----
Q 042875 100 GEKACVPSSIQNFKYLSALSFEGCKS-LR--SFPS-NLHFVCPVTINFSYCVTLIEFPQ---ISGKITRLYLDQS----- 167 (432)
Q Consensus 100 ~~~~~~~~~~~~l~~L~~L~l~~~~~-~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~----- 167 (432)
.. ++.....+++|+.|++++|.. .+ .+.. ...+++|++|++++|.....++. ..++|+.|.+..+
T Consensus 174 ~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 174 HW---LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp GG---GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred HH---HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccc
Confidence 22 344445788999999998761 11 1111 23378999999998844333332 3346666664332
Q ss_pred --------------------------ccccccccccCCCCCCEEeecccccccc-ccchhcCCCCccEEEecCccCcccc
Q 042875 168 --------------------------AIEEVPSSIECLTDLEVLDLRDCKRLKR-ISTRFCKLRSLVDLFVNGCLNLERF 220 (432)
Q Consensus 168 --------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~ 220 (432)
....++..+..+++|+.|++++|.+... +...+..+++|+.|++.+|.....+
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l 330 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHH
Confidence 1123343444678999999999985443 3334568899999999987221223
Q ss_pred hHhhhcCCCCCeeeecc---------cccc--ccCcccCCCCCccEEeecCCCCCCccccccC-Ccccccccccc--c--
Q 042875 221 PEILEKMEHLKRINLDG---------TAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIG-NLESLRHISAA--G-- 284 (432)
Q Consensus 221 ~~~l~~l~~L~~L~l~~---------~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~-- 284 (432)
+.....+++|++|++.+ +.++ .+......+++|+.|.+..+.+.+.....+. .+++|+.|+++ +
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 34445689999999943 4444 2222223478999998877766554444443 57899999998 3
Q ss_pred --cccccc------CccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC-Cchhh-hcCCCCCEEEee
Q 042875 285 --SAISQL------PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEI-AYLSSLKSLDLR 354 (432)
Q Consensus 285 --~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~-~~~~~L~~L~l~ 354 (432)
+.+... +..+..+++|++|++++ ...+.....+...+++|+.|++++|.++. .+..+ ..+++|++|+++
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 344422 22367789999999977 43333333333347899999999999876 33333 679999999999
Q ss_pred CCCCc--ccChhccCCCCCCeeeccCCCCCccc----CCCCCCccEEeccCC
Q 042875 355 GNNFE--SLPASIKQLSRLCSLDLRRCNMLQSL----PALPLCLKYLHLTGC 400 (432)
Q Consensus 355 ~n~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~c 400 (432)
+|.++ .+...+..+++|++|++++|+..... ...++.|+...+...
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 99987 23345567899999999999873321 123355655555443
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.1e-24 Score=194.30 Aligned_cols=237 Identities=13% Similarity=-0.015 Sum_probs=138.6
Q ss_pred cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCC--CCCCCceeeeeccccccccCCCcccccCC
Q 042875 30 NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSN--FKPKNLVELNLRFSKVEQPWEGEKACVPS 107 (432)
Q Consensus 30 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 107 (432)
.++..+++.+.+.. ........++ +|++|++++|.++.++.. ..+++|++|++++|.++. +++
T Consensus 11 ~l~i~~ls~~~l~~------~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~ 75 (317)
T 3o53_A 11 RYKIEKVTDSSLKQ------ALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--------TLD 75 (317)
T ss_dssp EEEEESCCTTTHHH------HHHHHHTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--------EEE
T ss_pred ceeEeeccccchhh------hHHHHhccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--------chh
Confidence 45566666666543 1222223343 788888888877766532 277778888888777763 222
Q ss_pred cccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEee
Q 042875 108 SIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDL 187 (432)
Q Consensus 108 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 187 (432)
+..+++|++|++++|...+ ++ ..++|++|++++|.+. .++.. .+++|+.|++
T Consensus 76 -~~~l~~L~~L~Ls~n~l~~-l~---~~~~L~~L~l~~n~l~---------------------~~~~~--~~~~L~~L~l 127 (317)
T 3o53_A 76 -LESLSTLRTLDLNNNYVQE-LL---VGPSIETLHAANNNIS---------------------RVSCS--RGQGKKNIYL 127 (317)
T ss_dssp -ETTCTTCCEEECCSSEEEE-EE---ECTTCCEEECCSSCCS---------------------EEEEC--CCSSCEEEEC
T ss_pred -hhhcCCCCEEECcCCcccc-cc---CCCCcCEEECCCCccC---------------------CcCcc--ccCCCCEEEC
Confidence 6677777777777765432 11 1245555555555433 33321 2456777777
Q ss_pred ccccccccccchhcCCCCccEEEecCccCcccchHhh-hcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCc
Q 042875 188 RDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEIL-EKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDK 266 (432)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 266 (432)
++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.++.++. ...+++|++|++++|.+.+
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~- 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF- 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc-
Confidence 7766655555556667777777777766655544444 356777777777777765532 2346667777777665543
Q ss_pred cccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCC
Q 042875 267 LPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGL 311 (432)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (432)
++..+..+++|++|++++|.+..+|..+..+++|+.|++++|...
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 333455566666666666666655555555555555555555543
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=8.9e-24 Score=191.61 Aligned_cols=238 Identities=22% Similarity=0.199 Sum_probs=130.9
Q ss_pred CCCCEEeeccccccccccchhcCCCCccEEEecCccCc-ccchHhhh-------cCCCCCeeeecccccc-ccCccc--C
Q 042875 180 TDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNL-ERFPEILE-------KMEHLKRINLDGTAIT-ELPSSF--E 248 (432)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~-~~~~~~--~ 248 (432)
++|+.+++++|.+ .+|..+... |+.|+++++.+. ..++..+. .+++|++|++++|.++ .+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3445555555544 333333222 555555554442 22333332 4556666666666665 344443 5
Q ss_pred CCCCccEEeecCCCCCCccccccCCc-----ccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCC--chh-hh
Q 042875 249 NLPGLEELFVSDCSKLDKLPDNIGNL-----ESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSL--PRS-LL 319 (432)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~-~~ 319 (432)
.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.+.. +.. .+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 566666666666655544 4444444 56666666666666444 45566666666666666644331 111 12
Q ss_pred cCCCCccEEEeeccCCCCCc---h-hhhcCCCCCEEEeeCCCCcccC--hhccCCCCCCeeeccCCCCCcccCCC-CCCc
Q 042875 320 LGLSSLGLLYIMNCAVMEIP---Q-EIAYLSSLKSLDLRGNNFESLP--ASIKQLSRLCSLDLRRCNMLQSLPAL-PLCL 392 (432)
Q Consensus 320 ~~~~~L~~L~l~~~~~~~~~---~-~~~~~~~L~~L~l~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~L 392 (432)
..+++|++|++++|.+..++ . .+..+++|++|++++|+++..+ ..+..+++|++|++++|.+. .+|.. +++|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L 276 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL 276 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCc
Confidence 45667777777777766422 2 2245667777777777776433 33445667777777777654 45532 2567
Q ss_pred cEEeccCCCCccccCC--CCCccceeccccccccc
Q 042875 393 KYLHLTGCNMLRSLPE--LPLCLQELDATNCNRLQ 425 (432)
Q Consensus 393 ~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~ 425 (432)
++|++++| .++.+|. ..+.|++|++++ +.++
T Consensus 277 ~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~-N~l~ 309 (312)
T 1wwl_A 277 SVLDLSYN-RLDRNPSPDELPQVGNLSLKG-NPFL 309 (312)
T ss_dssp EEEECCSS-CCCSCCCTTTSCEEEEEECTT-CTTT
T ss_pred eEEECCCC-CCCCChhHhhCCCCCEEeccC-CCCC
Confidence 77777774 3454443 456677777777 3443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.5e-22 Score=191.87 Aligned_cols=213 Identities=14% Similarity=0.023 Sum_probs=126.0
Q ss_pred hcceeecCCCCCCCCCC-CC-CCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCc
Q 042875 61 KLRYLHWDTYPLRILPS-NF-KPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCP 138 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 138 (432)
+|++|++++|.++.++. .+ .+++|++|++++|.++.. .| +..+++|++|++++|.+.+ ++ ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~--l~~l~~L~~L~Ls~N~l~~-l~---~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-------LD--LESLSTLRTLDLNNNYVQE-LL---VGPSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-------EE--CTTCTTCCEEECCSSEEEE-EE---ECTTC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-------cc--cccCCCCCEEEecCCcCCC-CC---CCCCc
Confidence 66666666666655543 22 566666666666665531 11 5556666666666654322 11 11444
Q ss_pred eEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc
Q 042875 139 VTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE 218 (432)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 218 (432)
++|++++ |.+..++.. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 102 ~~L~L~~---------------------N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 102 ETLHAAN---------------------NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CEEECCS---------------------SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CEEECcC---------------------CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 4444444 444443332 34567777777776666556666667777777777776666
Q ss_pred cchHhhh-cCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCC
Q 042875 219 RFPEILE-KMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADS 297 (432)
Q Consensus 219 ~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 297 (432)
..|..+. .+++|++|++++|.++.++. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+..+|..+..+
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred cChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence 5555554 56777777777777765533 3346677777777766554 3334566667777777777666666666666
Q ss_pred CCCcEEeccCCCCC
Q 042875 298 NALLILDFSRCKGL 311 (432)
Q Consensus 298 ~~L~~L~l~~~~~~ 311 (432)
++|+.|++++|.+.
T Consensus 237 ~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 237 QNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEcCCCCCc
Confidence 66666666666544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=4.5e-21 Score=170.78 Aligned_cols=214 Identities=22% Similarity=0.196 Sum_probs=142.2
Q ss_pred ccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC-cc
Q 042875 168 AIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP-SS 246 (432)
Q Consensus 168 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~ 246 (432)
.+..+|..+. +++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++ ..
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 3344555442 45677777776655544445666777777777776655544555666777777777777776544 45
Q ss_pred cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc--cCccccCCCCCcEEeccCCCCCCCCchhhhcCCCC
Q 042875 247 FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ--LPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSS 324 (432)
Q Consensus 247 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 324 (432)
+..+++|++|++++|.+....+..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+. .+..+.+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhh
Confidence 6677777777777776655555456677777777777777764 566777777778888777765443222 2223334
Q ss_pred cc----EEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChh-ccCCCCCCeeeccCCCCCcc
Q 042875 325 LG----LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDLRRCNMLQS 384 (432)
Q Consensus 325 L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~ 384 (432)
++ .+++++|.+..++.......+|+.|++++|.++.+|.. +..+++|++|++++|++...
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 44 78888888888666655566888888888888877654 47788888888888876543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.3e-21 Score=184.33 Aligned_cols=232 Identities=13% Similarity=0.129 Sum_probs=176.9
Q ss_pred CCCCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCee
Q 042875 155 ISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRI 233 (432)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 233 (432)
..++++.|++++|.+..++ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 3447889999998887765 578888899999999888766544 778888999999888655322 33788899
Q ss_pred eeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCcccc-CCCCCcEEeccCCCCC
Q 042875 234 NLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPSSVA-DSNALLILDFSRCKGL 311 (432)
Q Consensus 234 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~ 311 (432)
++++|.++.++. ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.. .+..+. .+++|+.|++++|.+.
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999888886554 346788999999888887777778888889999999888874 344443 6788999999888855
Q ss_pred CCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC-cccCC---
Q 042875 312 VSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML-QSLPA--- 387 (432)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~--- 387 (432)
+. +. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++. ..+|.
T Consensus 183 ~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DV-KG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE-EC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc-cc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 43 22 2257888899999988888777788888899999999888888888888888888999888876 33332
Q ss_pred CCCCccEEecc
Q 042875 388 LPLCLKYLHLT 398 (432)
Q Consensus 388 ~~~~L~~L~l~ 398 (432)
.++.|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 23445555554
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=1.3e-19 Score=161.98 Aligned_cols=197 Identities=19% Similarity=0.209 Sum_probs=123.3
Q ss_pred CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237 (432)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (432)
+++.+++.++++..+|..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.+.... . ...+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-V-DGTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-C-CSCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-C-CCCCCcCCEEECCC
Confidence 34444455555555555443 56677777777665555566666777777777776554322 2 15667777777777
Q ss_pred ccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEeccCCCCCCCCch
Q 042875 238 TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDFSRCKGLVSLPR 316 (432)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~ 316 (432)
|.++.+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+. .++.
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~ 165 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCT
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCH
Confidence 77777776667777777777777766655555566677777777777766655433 355666666666666533 3444
Q ss_pred hhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875 317 SLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 317 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
..+..+++|+.|++++|.+..+|..+...++|+.+++++|.+.
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 4445566666666666666666666666666666666666554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.7e-20 Score=166.41 Aligned_cols=225 Identities=14% Similarity=0.085 Sum_probs=147.9
Q ss_pred ccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCc
Q 042875 29 SNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSS 108 (432)
Q Consensus 29 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 108 (432)
.++..+++..+.+.+ ......++ +|+.|+++++.++.++....+++|++|++++|.++. + ..
T Consensus 19 ~~l~~l~l~~~~~~~--------~~~~~~l~-~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--------~-~~ 80 (272)
T 3rfs_A 19 AETIKANLKKKSVTD--------AVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--------I-SA 80 (272)
T ss_dssp HHHHHHHHTCSCTTS--------EECHHHHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--------C-GG
T ss_pred HHHHHHHhcCccccc--------cccccccc-ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--------c-hh
Confidence 344555666555543 12344554 777888887777777766677788888888877764 2 24
Q ss_pred ccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEee
Q 042875 109 IQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDL 187 (432)
Q Consensus 109 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 187 (432)
+..+++|++|++++|...+..+. +..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------------~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--------------------PDGVFDKLTNLTYLNL 140 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC--------------------CTTTTTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc--------------------CHHHhccCCCCCEEEC
Confidence 67777888888887765543333 45677788887777765421 1223556677777777
Q ss_pred ccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccCCCCCccEEeecCCCCCCc
Q 042875 188 RDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLDK 266 (432)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~ 266 (432)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|+.|++++|++.+
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 219 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 219 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-
Confidence 7776655444556667777777777776665555556777788888888877775544 35777888888888876543
Q ss_pred cccccCCccccccccccccccc-ccCccccCCC
Q 042875 267 LPDNIGNLESLRHISAAGSAIS-QLPSSVADSN 298 (432)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~ 298 (432)
.+++++.++++.|.+. .+|..++.++
T Consensus 220 ------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 220 ------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 3567788888777766 5565555443
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=5.5e-20 Score=160.03 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=109.7
Q ss_pred CccEEEecccccccccc-cccCCCCCCEEeecccc-ccccccchhcCCCCccEEEecC-ccCcccchHhhhcCCCCCeee
Q 042875 158 KITRLYLDQSAIEEVPS-SIECLTDLEVLDLRDCK-RLKRISTRFCKLRSLVDLFVNG-CLNLERFPEILEKMEHLKRIN 234 (432)
Q Consensus 158 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 234 (432)
+++.|++.++.+..++. .+..+++|+.|++++|. +....+..+..+++|+.|++++ |.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555555554444 45566666666666664 3333333455566666666665 444333334455556666666
Q ss_pred eccccccccCcccCCCCCcc---EEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCc-EEeccCCC
Q 042875 235 LDGTAITELPSSFENLPGLE---ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALL-ILDFSRCK 309 (432)
Q Consensus 235 l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~L~l~~~~ 309 (432)
+++|.++.+|. +..+++|+ .|++++|. .+..++. .+..+++|+ +|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~-----------------------~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCT-----------------------TCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCc-----------------------chhhcCcccccchhcceeEEEcCCCC
Confidence 66665555544 44445444 55555551 3333322 244445555 55555554
Q ss_pred CCCCCchhhhcCCCCccEEEeeccC-CCCCc-hhhhcC-CCCCEEEeeCCCCcccChhccCCCCCCeeeccCCC
Q 042875 310 GLVSLPRSLLLGLSSLGLLYIMNCA-VMEIP-QEIAYL-SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCN 380 (432)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~ 380 (432)
+. .++...+.. ++|+.|++++|. +..++ ..+..+ ++|+.|++++|+++.+|.. .+++|+.|++.++.
T Consensus 168 l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 168 FT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred Cc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 33 333333333 567777777774 66654 345667 7888888888888877765 57788888887754
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=3.2e-20 Score=164.73 Aligned_cols=211 Identities=16% Similarity=0.112 Sum_probs=123.6
Q ss_pred hhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcc
Q 042875 23 GAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEK 102 (432)
Q Consensus 23 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~ 102 (432)
..+..+++|+.|+++++.+.+ ...+..++ +|++|++++|.++.++....+++|++|++++|.++.+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~--------~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~----- 100 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKS--------VQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL----- 100 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCC--------CTTGGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-----
T ss_pred cccccccceeeeeeCCCCccc--------ccccccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-----
Confidence 345566666777766666652 22355564 6777777766666665445666677777776666532
Q ss_pred cccCCcccCcccCceEeccCCccCCcCCC-CCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCC
Q 042875 103 ACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTD 181 (432)
Q Consensus 103 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 181 (432)
.+..+..+++|++|++++|...+..+. +..+++|++|++++|.+.. ..+..+..+++
T Consensus 101 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------------~~~~~~~~l~~ 158 (272)
T 3rfs_A 101 --PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--------------------LPKGVFDKLTN 158 (272)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------CCTTTTTTCTT
T ss_pred --ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--------------------cCHHHhccCcc
Confidence 223356666677777766655433332 3446666666666654331 11123455666
Q ss_pred CCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCC
Q 042875 182 LEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDC 261 (432)
Q Consensus 182 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 261 (432)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+++++.+++..|
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence 677777766655544444566666777777666665555555566666777776666544 23455666666666
Q ss_pred CCCCccccccCCcc
Q 042875 262 SKLDKLPDNIGNLE 275 (432)
Q Consensus 262 ~~~~~~~~~~~~l~ 275 (432)
.+.+.+|.+++.++
T Consensus 233 ~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 233 KHSGVVRNSAGSVA 246 (272)
T ss_dssp HTGGGBBCTTSCBC
T ss_pred hCCCcccCcccccC
Confidence 66666666555443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.6e-19 Score=158.69 Aligned_cols=197 Identities=23% Similarity=0.330 Sum_probs=101.8
Q ss_pred ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875 159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT 238 (432)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (432)
.+.+++.++.+..+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4445555555555555443 45666666666554444445555666666666665544333333455566666666666
Q ss_pred cccccCc-ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875 239 AITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS 317 (432)
Q Consensus 239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (432)
.++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+..++. .
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~ 151 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK------------------------G 151 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------T
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH------------------------h
Confidence 5554442 23455555666665555444444444455555555555554443332 2
Q ss_pred hhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875 318 LLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~ 381 (432)
.+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 23344555555555555555333 24455555555555555554443 244555555555555553
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2e-19 Score=160.83 Aligned_cols=202 Identities=20% Similarity=0.179 Sum_probs=174.1
Q ss_pred cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875 175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE 254 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 254 (432)
.+.++++++.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.++.++.. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 3567889999999997654 455544 37899999999988877788899999999999999999977654 7899999
Q ss_pred EEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeecc
Q 042875 255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333 (432)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (432)
.|++++|.+. .+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC
Confidence 9999998765 67777889999999999999999776 56888999999999999855 455556678899999999999
Q ss_pred CCCCCchh-hhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875 334 AVMEIPQE-IAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 334 ~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~ 382 (432)
+++.+|.. +..+++|+.|++++|+++.+|..+...++|+.+++++|+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99997765 57799999999999999999999999999999999999864
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=3.5e-21 Score=176.73 Aligned_cols=228 Identities=18% Similarity=0.236 Sum_probs=137.5
Q ss_pred CCccEEEecccccccccccccCCCCCCEEeecccccccc-ccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875 157 GKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKR-ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235 (432)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (432)
.+++.+++.++.+...+..+..+++|++|++++|.+... ++..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 345555555555554444555677888888888776544 6666777788888888887766666667777778888888
Q ss_pred ccc-ccc--ccCcccCCCCCccEEeecCC-CCCCc-cccccCCcc-ccccccccccc--cc--ccCccccCCCCCcEEec
Q 042875 236 DGT-AIT--ELPSSFENLPGLEELFVSDC-SKLDK-LPDNIGNLE-SLRHISAAGSA--IS--QLPSSVADSNALLILDF 305 (432)
Q Consensus 236 ~~~-~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l 305 (432)
++| .++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|. +. .++..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 777 566 35555666777777777777 54432 344455666 77777777763 32 44555566677777777
Q ss_pred cCCCCCC-CCchhhhcCCCCccEEEeeccC-CCC-CchhhhcCCCCCEEEeeCCCCcccChhccCC-CCCCeeeccCCCC
Q 042875 306 SRCKGLV-SLPRSLLLGLSSLGLLYIMNCA-VME-IPQEIAYLSSLKSLDLRGNNFESLPASIKQL-SRLCSLDLRRCNM 381 (432)
Q Consensus 306 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l-~~L~~L~l~~~~~ 381 (432)
++|...+ ..+. .+..+++|+.|++++|. +.. ....++.+++|+.|++++| ++. ..+..+ ..++.|++++|.+
T Consensus 230 ~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCS
T ss_pred CCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccC
Confidence 7766332 2232 23455667777777664 222 2224556677777777766 331 111222 2344555666665
Q ss_pred CcccCCC
Q 042875 382 LQSLPAL 388 (432)
Q Consensus 382 ~~~~~~~ 388 (432)
.+..|..
T Consensus 306 ~~~~~~~ 312 (336)
T 2ast_B 306 TTIARPT 312 (336)
T ss_dssp CCTTCSS
T ss_pred ccccCCc
Confidence 5555543
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=7.2e-21 Score=174.59 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=157.0
Q ss_pred CceeeeeccccccccCCCcccccCCcccCc--ccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCcc
Q 042875 83 NLVELNLRFSKVEQPWEGEKACVPSSIQNF--KYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKIT 160 (432)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~ 160 (432)
.++.++++++.+.. ..+..+ ++++.++++++...+..+....+++|++|++++|.+...
T Consensus 48 ~~~~l~l~~~~~~~----------~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~--------- 108 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS--------- 108 (336)
T ss_dssp TSSEEECTTCBCCH----------HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---------
T ss_pred hheeeccccccCCH----------HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---------
Confidence 46778887776542 224555 778888888877766666667778888888887764421
Q ss_pred EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc-Ccc-cchHhhhcCCCCCeeeeccc
Q 042875 161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL-NLE-RFPEILEKMEHLKRINLDGT 238 (432)
Q Consensus 161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l~~L~~L~l~~~ 238 (432)
.++..+..+++|++|++++|.+....+..+..+++|+.|++++|. +.+ .++..+..+++|++|++++|
T Consensus 109 ----------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 109 ----------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ----------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ----------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 134445566677777777766555555566667777777777763 332 24555666777777777776
Q ss_pred -cccc--cCcccCCCC-CccEEeecCCC--CC-CccccccCCccccccccccccc-cc-ccCccccCCCCCcEEeccCCC
Q 042875 239 -AITE--LPSSFENLP-GLEELFVSDCS--KL-DKLPDNIGNLESLRHISAAGSA-IS-QLPSSVADSNALLILDFSRCK 309 (432)
Q Consensus 239 -~~~~--~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~ 309 (432)
.++. ++..+..++ +|++|++++|. +. ..++..+..+++|++|++++|. +. ..+..+..+++|++|++++|.
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 6662 455556666 77777777763 22 3344445566777777777776 43 445566777888888888875
Q ss_pred CCCCCchhhhcCCCCccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCCCcc-cChhc
Q 042875 310 GLVSLPRSLLLGLSSLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNNFES-LPASI 365 (432)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~-l~~~~ 365 (432)
...+.....+..+++|+.|++++| +.. ....+. ..++.|++++|.++. .|..+
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 333332223456788888888888 443 222222 235555688888884 44443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6e-20 Score=159.80 Aligned_cols=196 Identities=16% Similarity=0.148 Sum_probs=109.8
Q ss_pred CccEEEecCccCcccchHhhhcCCCCCeeeecccc-ccccCc-ccCCCCCccEEeecC-CCCCCccccccCCcccccccc
Q 042875 205 SLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA-ITELPS-SFENLPGLEELFVSD-CSKLDKLPDNIGNLESLRHIS 281 (432)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 281 (432)
+++.|++++|.+.+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++ |.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444443333333334444455555555543 443332 344555555555554 443333333455566666666
Q ss_pred cccccccccCccccCCCCCc---EEeccCCCCCCCCchhhhcCCCCcc-EEEeeccCCCCCchhhhcCCCCCEEEeeCCC
Q 042875 282 AAGSAISQLPSSVADSNALL---ILDFSRCKGLVSLPRSLLLGLSSLG-LLYIMNCAVMEIPQEIAYLSSLKSLDLRGNN 357 (432)
Q Consensus 282 l~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 357 (432)
+++|.+..+|. +..+++|+ +|++++|.....++...+..+++|+ .|++++|.+..+|......++|+.|++++|+
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 66666655554 55555665 7777777334445554455677777 7777777777766544344677777777774
Q ss_pred -CcccC-hhccCC-CCCCeeeccCCCCCcccCCCCCCccEEeccCCC
Q 042875 358 -FESLP-ASIKQL-SRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCN 401 (432)
Q Consensus 358 -l~~l~-~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~ 401 (432)
++.++ ..+..+ ++|++|++++|++.+..+..+.+|+.|++.++.
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 76554 345666 777777777766543323345666666666654
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.7e-19 Score=160.50 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=23.2
Q ss_pred CccEEEeeccCCCCCchh-hhcCCCCCEEEeeCCCCc
Q 042875 324 SLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~ 359 (432)
+|+.|++++|.++.++.. +..+++|+.|++++|.++
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 566666666666665443 456677777777777665
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.2e-21 Score=183.31 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=128.2
Q ss_pred cCCcccCcccCceEeccCCccCCc----CC-CCCCCCCceEEEecCcccc---cccCCCCCCccEEEecccccccccccc
Q 042875 105 VPSSIQNFKYLSALSFEGCKSLRS----FP-SNLHFVCPVTINFSYCVTL---IEFPQISGKITRLYLDQSAIEEVPSSI 176 (432)
Q Consensus 105 ~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~ 176 (432)
++..+..+++|+.|++++|..... ++ .+..+++|++|++++|... ..+|..+ ..+...+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~-------------~~l~~~l 90 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL-------------RLLLQAL 90 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH-------------HHHHHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH-------------HHHHHHH
Confidence 344455556666666666544432 11 2334556666666554221 1111111 2222344
Q ss_pred cCCCCCCEEeeccccccc----cccchhcCCCCccEEEecCccCcccch----HhhhcC---------CCCCeeeecccc
Q 042875 177 ECLTDLEVLDLRDCKRLK----RISTRFCKLRSLVDLFVNGCLNLERFP----EILEKM---------EHLKRINLDGTA 239 (432)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l---------~~L~~L~l~~~~ 239 (432)
..+++|++|++++|.+.. .++..+..+++|+.|++++|.+....+ ..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 566777777777776655 355556667777777777766543322 223233 677777777766
Q ss_pred cc--ccC---cccCCCCCccEEeecCCCCCC-----ccccccCCcccccccccccccc-----cccCccccCCCCCcEEe
Q 042875 240 IT--ELP---SSFENLPGLEELFVSDCSKLD-----KLPDNIGNLESLRHISAAGSAI-----SQLPSSVADSNALLILD 304 (432)
Q Consensus 240 ~~--~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~ 304 (432)
++ .++ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+ ..++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 222 344556667777777665542 1222455566666666666665 23444555566666666
Q ss_pred ccCCCCCCC----Cchhhh-cCCCCccEEEeeccCCCC-----Cchhh-hcCCCCCEEEeeCCCCc
Q 042875 305 FSRCKGLVS----LPRSLL-LGLSSLGLLYIMNCAVME-----IPQEI-AYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 305 l~~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~n~l~ 359 (432)
+++|.+... ++..+. ..+++|+.|++++|.++. +|..+ ..+++|+.|++++|.++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 666654332 111110 125566666666666655 55444 44566666666666655
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=164.73 Aligned_cols=201 Identities=17% Similarity=0.161 Sum_probs=131.6
Q ss_pred CCCCCEEeeccccccccccchh--cCCCCccEEEecCccCcccch----HhhhcCCCCCeeeeccccccccC-cccCCCC
Q 042875 179 LTDLEVLDLRDCKRLKRISTRF--CKLRSLVDLFVNGCLNLERFP----EILEKMEHLKRINLDGTAITELP-SSFENLP 251 (432)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~ 251 (432)
+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++.++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557888888877776666665 677788888888777665432 23346778888888888887544 5667788
Q ss_pred CccEEeecCCCCCCc--c--ccccCCcccccccccccccccccCc----cccCCCCCcEEeccCCCCCCCCchhhh--cC
Q 042875 252 GLEELFVSDCSKLDK--L--PDNIGNLESLRHISAAGSAISQLPS----SVADSNALLILDFSRCKGLVSLPRSLL--LG 321 (432)
Q Consensus 252 ~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~ 321 (432)
+|++|++++|.+.+. + +..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+..|.... ..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 888888888775542 2 1223567778888888877764433 235567777777777775554443221 12
Q ss_pred CCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCC
Q 042875 322 LSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~ 382 (432)
+++|++|++++|.++.+|..+. ++|+.|++++|+++.+|. +..+++|++|++++|++.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 3577777777777777665543 677777777777776644 456677777777776653
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=6e-19 Score=159.32 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=96.1
Q ss_pred cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875 175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE 254 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 254 (432)
.+..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.++.++. +..+++|+
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ 132 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence 355566666666666654332 22 5566666666666655433 22 45566666666666666665443 55666666
Q ss_pred EEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccC
Q 042875 255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA 334 (432)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 334 (432)
.|++++|.+.+..+ +..+++|++|++++|.+..++. +..+++|++|++++|...+. +. +..+++|+.|++++|.
T Consensus 133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI-SP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECTTSC
T ss_pred EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC-hh--hcCCCCCCEEEccCCc
Confidence 66666665443222 4455566666666665554433 45555555555555553322 21 3345555555655555
Q ss_pred CCCCchhhhcCCCCCEEEeeCCCCcccC
Q 042875 335 VMEIPQEIAYLSSLKSLDLRGNNFESLP 362 (432)
Q Consensus 335 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 362 (432)
+..++. +..+++|+.|++++|.++..|
T Consensus 207 l~~~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 207 ISDVSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred cCcccc-ccCCCCCCEEEccCCeeecCC
Confidence 555442 455555666666655555443
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-18 Score=153.30 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=40.2
Q ss_pred ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCc-ccCCCCCcc
Q 042875 176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPS-SFENLPGLE 254 (432)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 254 (432)
+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 3445555555555554433333334445555555555544433333334444455555555544443332 233444444
Q ss_pred EEeecCCCC
Q 042875 255 ELFVSDCSK 263 (432)
Q Consensus 255 ~L~l~~~~~ 263 (432)
.|++++|++
T Consensus 209 ~L~l~~N~~ 217 (270)
T 2o6q_A 209 MLQLQENPW 217 (270)
T ss_dssp EEECCSSCB
T ss_pred EEEecCCCe
Confidence 444444443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=164.34 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=123.1
Q ss_pred CCCEEeeccccccccc-cc--hhcCCCCccEEEecCccCcccchHhh--hcCCCCCeeeecccccccc-C----cccCCC
Q 042875 181 DLEVLDLRDCKRLKRI-ST--RFCKLRSLVDLFVNGCLNLERFPEIL--EKMEHLKRINLDGTAITEL-P----SSFENL 250 (432)
Q Consensus 181 ~L~~L~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~-~----~~~~~l 250 (432)
.++.+.+.++...... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.++.. + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4666677665543211 11 12234568888888777766666655 6777788888887777632 1 223456
Q ss_pred CCccEEeecCCCCCCccccccCCcccccccccccccccc---c--CccccCCCCCcEEeccCCCCCC--CCchhhhcCCC
Q 042875 251 PGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ---L--PSSVADSNALLILDFSRCKGLV--SLPRSLLLGLS 323 (432)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 323 (432)
++|++|++++|.+....+..+..+++|++|++++|.+.. + ...+..+++|++|++++|.+.. ..+...+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 777777777777666555666677777777777776531 2 1223455666666666665421 11111233455
Q ss_pred CccEEEeeccCCCCC-chhhhcC---CCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc-ccCCCCCCccEEecc
Q 042875 324 SLGLLYIMNCAVMEI-PQEIAYL---SSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ-SLPALPLCLKYLHLT 398 (432)
Q Consensus 324 ~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~L~~L~l~ 398 (432)
+|++|++++|.+... |..+..+ ++|++|++++|+++.+|..+. ++|++|++++|++.+ ..+..+++|+.|+++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 666666666666553 4444443 466666666666665555442 566666666665443 222333455555555
Q ss_pred CC
Q 042875 399 GC 400 (432)
Q Consensus 399 ~c 400 (432)
+|
T Consensus 303 ~N 304 (310)
T 4glp_A 303 GN 304 (310)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=6.9e-19 Score=158.91 Aligned_cols=194 Identities=17% Similarity=0.241 Sum_probs=161.7
Q ss_pred cCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEE
Q 042875 177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEEL 256 (432)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 256 (432)
..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.++.++ .+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 346789999999987544 34 578899999999999876544 44 889999999999999998775 68889999999
Q ss_pred eecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCC
Q 042875 257 FVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM 336 (432)
Q Consensus 257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (432)
++++|.+.+ ++. +..+++|++|++++|.+..++. +..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccC
Confidence 999998765 333 7889999999999999987665 7888999999999997554 333 568899999999999999
Q ss_pred CCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCc
Q 042875 337 EIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 337 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~ 383 (432)
.++. +..+++|+.|++++|+++.+++ +..+++|++|++++|++..
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred cChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 8775 7889999999999999998774 7899999999999988633
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=4.5e-21 Score=179.32 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCCCccEEEeeccCCC-----CCchhhhcCCCCCEEEeeCCCCcc-----cChhcc--CCCCCCeeeccCCCCCc
Q 042875 321 GLSSLGLLYIMNCAVM-----EIPQEIAYLSSLKSLDLRGNNFES-----LPASIK--QLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 321 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~-----l~~~~~--~l~~L~~L~l~~~~~~~ 383 (432)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++. ++..+. .+++|++|++++|.+..
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 3445555555555542 144444455555555555555441 233332 24555555555554433
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=2.9e-20 Score=172.17 Aligned_cols=36 Identities=14% Similarity=-0.043 Sum_probs=15.4
Q ss_pred CCcEEeccCCCCCCCCch---hhhcCCCCccEEEeeccC
Q 042875 299 ALLILDFSRCKGLVSLPR---SLLLGLSSLGLLYIMNCA 334 (432)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~ 334 (432)
+|++|++++|.+...... ..+..+++|+.|++++|.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 455555555543332221 112334455555555554
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=9.6e-20 Score=168.64 Aligned_cols=210 Identities=13% Similarity=0.093 Sum_probs=122.2
Q ss_pred cccCCC-CCCEEeeccccccccccchhcCC-----CCccEEEecCccCcccchHh----hhcC-CCCCeeeecccccccc
Q 042875 175 SIECLT-DLEVLDLRDCKRLKRISTRFCKL-----RSLVDLFVNGCLNLERFPEI----LEKM-EHLKRINLDGTAITEL 243 (432)
Q Consensus 175 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~ 243 (432)
.+..++ +|++|++++|.+....+..+..+ ++|++|++++|.+.+..+.. +..+ ++|++|++++|.++..
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 344444 55555555555544333333332 55666666665544433332 2223 5666666666666533
Q ss_pred Cc-----ccCC-CCCccEEeecCCCCCCc----cccccCCcc-cccccccccccccccC-----ccccCC-CCCcEEecc
Q 042875 244 PS-----SFEN-LPGLEELFVSDCSKLDK----LPDNIGNLE-SLRHISAAGSAISQLP-----SSVADS-NALLILDFS 306 (432)
Q Consensus 244 ~~-----~~~~-l~~L~~L~l~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~-----~~~~~~-~~L~~L~l~ 306 (432)
+. .+.. .++|++|++++|.+.+. ++..+...+ +|++|++++|.+.... ..+..+ ++|++|+++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 21 2333 24666666666655432 222233333 6777777777665332 234445 478888888
Q ss_pred CCCCCCC----CchhhhcCCCCccEEEeeccCCCCCc-----hhhhcCCCCCEEEeeCCCCc--------ccChhccCCC
Q 042875 307 RCKGLVS----LPRSLLLGLSSLGLLYIMNCAVMEIP-----QEIAYLSSLKSLDLRGNNFE--------SLPASIKQLS 369 (432)
Q Consensus 307 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~--------~l~~~~~~l~ 369 (432)
+|.+... ++.......++|++|++++|.++..+ ..+..+++|+.|++++|.+. .++..+..++
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 8875442 22222223468999999999988733 33467788999999999743 2334566788
Q ss_pred CCCeeeccCCCCCcc
Q 042875 370 RLCSLDLRRCNMLQS 384 (432)
Q Consensus 370 ~L~~L~l~~~~~~~~ 384 (432)
+|++|++++|++...
T Consensus 285 ~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 285 KIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEECTTSCBCCGG
T ss_pred ceEEEecCCCcCCCc
Confidence 889999999887554
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1.4e-17 Score=153.29 Aligned_cols=233 Identities=19% Similarity=0.183 Sum_probs=155.7
Q ss_pred EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccch-HhhhcCCCCCee-eeccc
Q 042875 161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFP-EILEKMEHLKRI-NLDGT 238 (432)
Q Consensus 161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L-~l~~~ 238 (432)
.++.++++++++|..+ .+++++|++++|++...-+.+|.++++|++|++++|.+.+.++ .++..+++++++ .+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 4455556667777665 3577888888877655444567778888888888877666554 345677777654 45567
Q ss_pred ccccc-CcccCCCCCccEEeecCCCCCCccccccCCccccccccccc-ccccccCc-cccCC-CCCcEEeccCCCCCCCC
Q 042875 239 AITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAG-SAISQLPS-SVADS-NALLILDFSRCKGLVSL 314 (432)
Q Consensus 239 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~ 314 (432)
+++.+ +..+..+++|+.|++++|.+....+..+....++..+++.+ +.+..++. .+..+ ..++.|++++|.+. .+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence 88866 45678889999999998877665554555566677777755 35554443 23333 45777888887643 34
Q ss_pred chhhhcCCCCccEEEeec-cCCCCCch-hhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCCCcccCC--CCC
Q 042875 315 PRSLLLGLSSLGLLYIMN-CAVMEIPQ-EIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNMLQSLPA--LPL 390 (432)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~ 390 (432)
+...+ ...+++++++.+ |.++.+|. .+..+++|++|++++|+++.+|.. .+.+|+.|.+.++...+.+|. .++
T Consensus 170 ~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 170 HNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLV 246 (350)
T ss_dssp CTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred Chhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCc
Confidence 44433 345677787764 56666665 357778888888888888877753 366777777777777777773 346
Q ss_pred CccEEeccC
Q 042875 391 CLKYLHLTG 399 (432)
Q Consensus 391 ~L~~L~l~~ 399 (432)
+|+.+++.+
T Consensus 247 ~L~~l~l~~ 255 (350)
T 4ay9_X 247 ALMEASLTY 255 (350)
T ss_dssp SCCEEECSC
T ss_pred ChhhCcCCC
Confidence 777777754
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=3.8e-17 Score=150.35 Aligned_cols=238 Identities=18% Similarity=0.187 Sum_probs=150.7
Q ss_pred ceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceE
Q 042875 63 RYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVT 140 (432)
Q Consensus 63 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~ 140 (432)
+.++.+++.++.+|..+ .+++++|++++|+++.+.. ..|..+++|++|++++|...+.++ .+.+++++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~-------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQK-------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECT-------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCH-------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 34555566666666554 3567777777777765321 236777777777777776655544 2344555544
Q ss_pred EEecCcccccccCCCCCCccEEEecccccccc-cccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875 141 INFSYCVTLIEFPQISGKITRLYLDQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219 (432)
Q Consensus 141 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 219 (432)
+.+..+ |.+..+ +..+..+++|++|++++|.+....+..+....++..+++.++.....
T Consensus 84 ~l~~~~--------------------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 84 IRIEKA--------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EEEEEE--------------------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred hhcccC--------------------CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 333222 222333 34566778888888888776555444455566777777766444443
Q ss_pred ch-HhhhcC-CCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCcccc-ccCCcccccccccccccccccCccccC
Q 042875 220 FP-EILEKM-EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPD-NIGNLESLRHISAAGSAISQLPSSVAD 296 (432)
Q Consensus 220 ~~-~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~ 296 (432)
++ ..+..+ ..++.|++++|+++.++......++++.+.+.+++....+|. .+..+++|++|++++|.+..+|.. .
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~ 221 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--G 221 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--S
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--h
Confidence 33 334444 357788888888888887777778888998887666666664 467888888888888888877653 3
Q ss_pred CCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeec
Q 042875 297 SNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN 332 (432)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 332 (432)
+.+|++|.+.++.....+|. +..+++|+.+++.+
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred hccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 55666776666555555553 34566666666654
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=6.6e-17 Score=141.55 Aligned_cols=175 Identities=19% Similarity=0.310 Sum_probs=97.0
Q ss_pred ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875 159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT 238 (432)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (432)
.+.+++.++.+..+|..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3445555555566665543 46667777776665555555666666666666666555544445555666666666666
Q ss_pred cccccCc-ccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875 239 AITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS 317 (432)
Q Consensus 239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (432)
.++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+..+ +..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~ 149 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI------------------------PAG 149 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------CTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc------------------------CHH
Confidence 5554432 334555555555555544433333333444444444444443333 222
Q ss_pred hhcCCCCccEEEeeccCCCCCch-hhhcCCCCCEEEeeCCCCc
Q 042875 318 LLLGLSSLGLLYIMNCAVMEIPQ-EIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~ 359 (432)
.+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 34455666666666666666443 4566677777777777665
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=1.3e-16 Score=139.64 Aligned_cols=177 Identities=15% Similarity=0.110 Sum_probs=95.4
Q ss_pred hcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCC-CCCCCCce
Q 042875 61 KLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS-NLHFVCPV 139 (432)
Q Consensus 61 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~ 139 (432)
+.++++++++.++.+|..+. +++++|++++|.++.+ .+..+..+++|++|++++|.+....+. +..+++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATL-------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCC-------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCcc-------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 44555555555555554443 4566666666665532 223355566666666666544433222 33455555
Q ss_pred EEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCccc
Q 042875 140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLER 219 (432)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 219 (432)
+|++++|.+... .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 87 ~L~L~~n~l~~~--------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 87 TLGLANNQLASL--------------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp EEECTTSCCCCC--------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEECCCCccccc--------------------ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 555555443311 112344555666666666655443334455566666666666655444
Q ss_pred chHhhhcCCCCCeeeeccccccccCc-ccCCCCCccEEeecCCCCCC
Q 042875 220 FPEILEKMEHLKRINLDGTAITELPS-SFENLPGLEELFVSDCSKLD 265 (432)
Q Consensus 220 ~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 265 (432)
.+..+..+++|++|++++|+++.++. .+..+++|+.|++++|++..
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 44455666666666666666665443 45566667777777666544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=6.6e-17 Score=144.60 Aligned_cols=170 Identities=20% Similarity=0.279 Sum_probs=79.4
Q ss_pred CCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEe
Q 042875 178 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELF 257 (432)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 257 (432)
.+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++.++. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 345566666666543322 2 24455556666665554433222 5555555555555555554432 45555555555
Q ss_pred ecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCC
Q 042875 258 VSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVME 337 (432)
Q Consensus 258 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (432)
+++|.+.+. ..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCC
Confidence 555544331 2244445555555555544433 334444444444444444322211 2234444444444444444
Q ss_pred CchhhhcCCCCCEEEeeCCCCc
Q 042875 338 IPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 338 ~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
++. +..+++|+.|++++|.++
T Consensus 193 l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEEEE
T ss_pred Chh-hccCCCCCEEECcCCccc
Confidence 332 344444444444444443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=7.5e-17 Score=156.21 Aligned_cols=177 Identities=22% Similarity=0.257 Sum_probs=91.8
Q ss_pred CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237 (432)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (432)
+++.|++.++.+..+|..+. ++|+.|++++|.+. .+| ..+++|+.|++++|.+.+ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 56666666666666665442 56666666666544 334 235566666666655443 443 332 566666666
Q ss_pred ccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchh
Q 042875 238 TAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRS 317 (432)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (432)
|.++.+|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+..+|. +. ++|+.|++++|.+. .+|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-
Confidence 66665554 45556666666655443 333 34555555555555555444 32 55555555555432 3332
Q ss_pred hhcCCCCc-------cEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875 318 LLLGLSSL-------GLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 318 ~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
+.. +| +.|++++|.++.+|..+..+++|+.|++++|.++
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 111 33 5555555555555544444555555555555544
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.7e-16 Score=153.65 Aligned_cols=191 Identities=16% Similarity=0.210 Sum_probs=109.2
Q ss_pred cceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcc
Q 042875 30 NLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSI 109 (432)
Q Consensus 30 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 109 (432)
+|+.|++++|.+. .+|..+. + +|++|++++|.++.+| ..+++|++|++++|.++. +|. +
T Consensus 60 ~L~~L~Ls~n~L~-------~lp~~l~--~-~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--------ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLS-------SLPDNLP--P-QITVLEITQNALISLP--ELPASLEYLDACDNRLST--------LPE-L 118 (571)
T ss_dssp TCSEEECCSSCCS-------CCCSCCC--T-TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--------CCC-C
T ss_pred CccEEEeCCCCCC-------ccCHhHc--C-CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--------cch-h
Confidence 7777888777776 3455442 3 7788888887777777 446778888888777764 444 3
Q ss_pred cCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeecc
Q 042875 110 QNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRD 189 (432)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 189 (432)
.. +|+.|++++|.+.+ +|. .+++|+.|++++|.+.. +|..+.+|+.|++++|.+..+|. +. ++|+.|++++
T Consensus 119 ~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST 189 (571)
T ss_dssp CT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS
T ss_pred hc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC
Confidence 33 77777777766544 555 56677777777766553 44444555555555555555554 33 5555555555
Q ss_pred ccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCcccc
Q 042875 190 CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPD 269 (432)
Q Consensus 190 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 269 (432)
|.+. .+|. +.. +| ....+.|+.|++++|.++.+|..+..+++|+.|++++|.+.+..|.
T Consensus 190 N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCS-SCCC-CC---------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5433 3332 221 23 0001112555555555555555555555566666666555554444
Q ss_pred cc
Q 042875 270 NI 271 (432)
Q Consensus 270 ~~ 271 (432)
.+
T Consensus 249 ~l 250 (571)
T 3cvr_A 249 SL 250 (571)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.1e-16 Score=141.28 Aligned_cols=173 Identities=23% Similarity=0.295 Sum_probs=125.0
Q ss_pred hcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccc
Q 042875 200 FCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRH 279 (432)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 279 (432)
...+++|+.|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.+.. ++ .+..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3456778888888765543 33 36677888888888888876665 7778888888888876554 33 3677788888
Q ss_pred cccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875 280 ISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
|++++|.+..+ ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.++
T Consensus 117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 88888877765 4566778888888888775443 234567788888888888877665 777788888888888887
Q ss_pred ccChhccCCCCCCeeeccCCCCCc
Q 042875 360 SLPASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 360 ~l~~~~~~l~~L~~L~l~~~~~~~ 383 (432)
.++. +..+++|+.|++++|++..
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CChh-hccCCCCCEEECcCCcccC
Confidence 7754 6778888888888877543
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.4e-16 Score=156.04 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=99.1
Q ss_pred ccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCC
Q 042875 55 LEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLH 134 (432)
Q Consensus 55 l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 134 (432)
+..++ +|+.|+++++.+..++....+++|++|+|++|.++. ++. +..+++|+.|++++|.+. .++.+..
T Consensus 39 ~~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~--------~~~-l~~l~~L~~L~Ls~N~l~-~l~~l~~ 107 (605)
T 1m9s_A 39 QNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP-LTNLKNLGWLFLDENKIK-DLSSLKD 107 (605)
T ss_dssp HHHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC--------CGG-GGGCTTCCEEECCSSCCC-CCTTSTT
T ss_pred hhcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC--------Chh-hccCCCCCEEECcCCCCC-CChhhcc
Confidence 34554 677777777777666655567777777777776654 222 667777777777776543 3455666
Q ss_pred CCCceEEEecCcccccccC--CCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEec
Q 042875 135 FVCPVTINFSYCVTLIEFP--QISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVN 212 (432)
Q Consensus 135 ~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 212 (432)
+++|+.|++++|.+.. ++ ..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+....+ +..+++|+.|+++
T Consensus 108 l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp CTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 6677777776665442 11 1233444444444444444 345556666666666665544333 5556666666666
Q ss_pred CccCcccchHhhhcCCCCCeeeeccccccc
Q 042875 213 GCLNLERFPEILEKMEHLKRINLDGTAITE 242 (432)
Q Consensus 213 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 242 (432)
+|.+.+ ++ .+..+++|+.|++++|.+..
T Consensus 184 ~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 184 KNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 655443 22 35556666666666665553
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=4.2e-16 Score=131.02 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=45.1
Q ss_pred cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875 175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE 254 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 254 (432)
.+..+++|++|++++|.+....+..+..+++|+.|++++|...+.++ .+..+++|++|++++|.++.++ .+..+++|+
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence 34445555555555555544444455555555555555554333333 3555555556655555555444 445555555
Q ss_pred EEeecCCC
Q 042875 255 ELFVSDCS 262 (432)
Q Consensus 255 ~L~l~~~~ 262 (432)
.|++++|+
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 55555554
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=3.4e-16 Score=131.55 Aligned_cols=150 Identities=18% Similarity=0.274 Sum_probs=88.9
Q ss_pred cCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCccccCCCCCcEEe
Q 042875 226 KMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPSSVADSNALLILD 304 (432)
Q Consensus 226 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~ 304 (432)
.+++|++|+++++.++.++ .+..+++|++|++++|... .+ ..+..+++|++|++++|.+.. .+..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3445555555555555444 4555555555555555221 11 234555666666666665552 445555666666666
Q ss_pred ccCCCCCCCCchhhhcCCCCccEEEeeccC-CCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875 305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCA-VMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~ 381 (432)
+++|.+.+..+. .+..+++|++|++++|. +..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|++
T Consensus 119 Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 666664443333 24466777777777776 66665 4677777777777777777665 566777777777777764
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=7.7e-16 Score=130.66 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=70.7
Q ss_pred CccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEe
Q 042875 252 GLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYI 330 (432)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 330 (432)
++++|++++|.+....+..+..+++|++|++++|.+..++.. +..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence 444444444444333333334444444444444444433322 344455555555554432 222222334555555555
Q ss_pred eccCCCCCchh-hhcCCCCCEEEeeCCCCcccChh-ccCCCCCCeeeccCCCCCcccCCCCCCccEEeccCCCCccccCC
Q 042875 331 MNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDLRRCNMLQSLPALPLCLKYLHLTGCNMLRSLPE 408 (432)
Q Consensus 331 ~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 408 (432)
++|.+..++.. +..+++|+.|++++|.++.++.. +..+++|++|++++|+.... ++.|++|+++.|..-..+|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHHHHHHHHHCTTTBBC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----CCCHHHHHHHHHhCCceeec
Confidence 55555553332 44555555555555555544432 45555555555555543322 22455555555443334443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=4.3e-16 Score=132.25 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=83.0
Q ss_pred EEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT 241 (432)
Q Consensus 162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (432)
++..++++..+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 344444445555444 346777777776655444444566667777777666555444444556666666666666666
Q ss_pred ccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCcc-ccCCCCCcEEeccCCC
Q 042875 242 ELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSS-VADSNALLILDFSRCK 309 (432)
Q Consensus 242 ~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 309 (432)
.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 55433 45666666666666655544444455566666666666655544432 3445555555555553
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.3e-15 Score=149.21 Aligned_cols=172 Identities=20% Similarity=0.301 Sum_probs=100.0
Q ss_pred cCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEE
Q 042875 177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEEL 256 (432)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 256 (432)
..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++ .+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 445667777777765433 22 36667777777777765544332 666777777777777766654 46666677777
Q ss_pred eecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCC
Q 042875 257 FVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVM 336 (432)
Q Consensus 257 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (432)
++++|.+.. + ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCC
Confidence 777665543 2 2355566666666666665544 345555555555555555433222 334555555555555555
Q ss_pred CCchhhhcCCCCCEEEeeCCCCcc
Q 042875 337 EIPQEIAYLSSLKSLDLRGNNFES 360 (432)
Q Consensus 337 ~~~~~~~~~~~L~~L~l~~n~l~~ 360 (432)
.++ .+..+++|+.|+|++|.+..
T Consensus 189 ~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 DLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp BCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCh-HHccCCCCCEEEccCCcCcC
Confidence 543 34555555555555555543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=3.8e-15 Score=128.25 Aligned_cols=152 Identities=20% Similarity=0.273 Sum_probs=120.0
Q ss_pred CCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCC
Q 042875 230 LKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRC 308 (432)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 308 (432)
.+.++.+++.++.+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+..++. .+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 456677777777776544 3778888888887777767777788888888888888876664 3577888888888888
Q ss_pred CCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCCCcc
Q 042875 309 KGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNMLQS 384 (432)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~~~~ 384 (432)
.+. .++...+..+++|+.|++++|.+..+|..+..+++|+.|++++|+++.++. .+..+++|++|++++|++...
T Consensus 99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCC-ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 744 455555667889999999999999999888999999999999999997764 578889999999999986544
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=5e-16 Score=136.62 Aligned_cols=147 Identities=23% Similarity=0.315 Sum_probs=71.5
Q ss_pred hcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEe
Q 042875 225 EKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILD 304 (432)
Q Consensus 225 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 304 (432)
..+++|++|+++++.++.++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+..++.... ++|+.|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 33444444444444444433 34444444444444443332221 4444445555555444444333222 4555555
Q ss_pred ccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCCCC
Q 042875 305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~~~ 381 (432)
+++|.+.+ ++ .+..+++|+.|++++|.++.++ .++.+++|+.|++++|+++.+ ..+..+++|++|++++|++
T Consensus 113 L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 113 LDNNELRD-TD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred ccCCccCC-Ch--hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 55554332 22 1334555666666665555554 355556666666666655544 4455556666666666554
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=4.9e-15 Score=126.65 Aligned_cols=147 Identities=22% Similarity=0.329 Sum_probs=82.4
Q ss_pred eeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCC
Q 042875 232 RINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKG 310 (432)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 310 (432)
.++.+++.++.+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34444444444443322 3455555555544443333445555555555555555533 34455555666666665553
Q ss_pred CCCCchhhhcCCCCccEEEeeccCCCCC-chhhhcCCCCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCCC
Q 042875 311 LVSLPRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~~ 381 (432)
. .++...+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|++|++++|++
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 3 34444445566677777777766663 4456666777777777777775543 356667777777777664
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4.3e-17 Score=158.66 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=97.0
Q ss_pred cCCCCCCEEeeccccccccccchhcCCCCccEEEecCcc-------------CcccchHhhhcCCCCCeee-eccccccc
Q 042875 177 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCL-------------NLERFPEILEKMEHLKRIN-LDGTAITE 242 (432)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~ 242 (432)
..+++|+.|++++|.+ +.+|..+..+++|+.|+++++. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 5567778888887765 4567777778888888776653 3344556666666777666 44443321
Q ss_pred cCcc------cCC--CCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCC
Q 042875 243 LPSS------FEN--LPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSL 314 (432)
Q Consensus 243 ~~~~------~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 314 (432)
++.. +.. ...|+.|++++|.+.+ +|. +..+++|+.|++++|.+..+|..++.+++|+.|++++|.+.+ +
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-C
Confidence 1100 000 0135666666655443 443 555566666666666555555555555555555555554332 3
Q ss_pred chhhhcCCCCccEEEeeccCCCCC--chhhhcCCCCCEEEeeCCCCccc
Q 042875 315 PRSLLLGLSSLGLLYIMNCAVMEI--PQEIAYLSSLKSLDLRGNNFESL 361 (432)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~l 361 (432)
| .+..+++|+.|++++|.++.+ |..++.+++|+.|++++|.++.+
T Consensus 502 p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 502 D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 3 233445555555555555543 44455555555555555554433
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=9e-15 Score=125.00 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=110.0
Q ss_pred EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875 161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI 240 (432)
Q Consensus 161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 240 (432)
.+++.++++..+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45555566666666554 5778888888776665555677788888888888777666677778888888888888888
Q ss_pred cccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCCC
Q 042875 241 TELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGLV 312 (432)
Q Consensus 241 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 312 (432)
+.++.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 876654 4678888888888887777667777778888888888888775554 46667777777777776443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=6.9e-15 Score=129.33 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=112.6
Q ss_pred ccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccC
Q 042875 27 NMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVP 106 (432)
Q Consensus 27 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 106 (432)
.+.++..++++++.+.+ ++ .+..++ +|++|++++|.++.++....+++|++|++++|.++. ++
T Consensus 17 ~l~~l~~l~l~~~~i~~-------~~-~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--------~~ 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-------LV-SQKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--------LS 79 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-------EE-CHHHHT-TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CG
T ss_pred HHHHHHHHHhcCCCccc-------cc-chhhcC-cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--------Ch
Confidence 56677778888887763 33 456675 888888888888888755577888888888888764 33
Q ss_pred CcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEe
Q 042875 107 SSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLD 186 (432)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 186 (432)
. +..+++|+.|++++|...+ ++.... ++|++|++++|. +..++ .+..+++|+.|+
T Consensus 80 ~-l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~---------------------l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 80 P-LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNE---------------------LRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp G-GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSC---------------------CSBSG-GGTTCTTCCEEE
T ss_pred h-hccCCCCCEEECCCCccCC-cCcccc-CcccEEEccCCc---------------------cCCCh-hhcCcccccEEE
Confidence 3 6777888888888765433 333333 555555555554 33332 466677777777
Q ss_pred eccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccC
Q 042875 187 LRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELP 244 (432)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 244 (432)
+++|++.+. + .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++..+
T Consensus 135 Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 135 IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 777765443 2 466677777777777665544 44566677777777777666443
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=122.86 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=90.6
Q ss_pred EEEecccccccccccccCCCCCCEEeecccccccccc-chhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875 161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA 239 (432)
Q Consensus 161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (432)
.++++++.+..+|..+. +.++.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44455555555555442 345666666666544422 335566666666666666555444556666666666666666
Q ss_pred ccccCc-ccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCC
Q 042875 240 ITELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVS 313 (432)
Q Consensus 240 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 313 (432)
++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 665443 356666677777776666665566666666677777776666644 45566666666666666664443
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.9e-17 Score=161.19 Aligned_cols=186 Identities=16% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCCCCceeeeeccccccccCCCcccccCCcccCcccCceEeccCCccC-------------CcCC-CCCCCCCceEEE-e
Q 042875 79 FKPKNLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSL-------------RSFP-SNLHFVCPVTIN-F 143 (432)
Q Consensus 79 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------~~~~-~~~~~~~L~~L~-l 143 (432)
..+++|+.|++++|.++. +|..++++++|+.|++++|... +..| .+..+++|+.|+ +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~--------Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV--------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp STTTTSSSCCCCHHHHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred ccCccceeccCChhhHHh--------hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 367788889999988864 7788888888888888664311 1111 112233333333 2
Q ss_pred cCcccccccCCCCCCccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHh
Q 042875 144 SYCVTLIEFPQISGKITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEI 223 (432)
Q Consensus 144 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 223 (432)
+.+.+ ..++.+.+.+|.+..++. ..|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..
T Consensus 418 ~~n~~--------~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 418 RAAYL--------DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp GHHHH--------HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred hhccc--------chhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchh
Confidence 22211 012222222222222221 135555555554333 333 455555555555554443 44445
Q ss_pred hhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCcc-ccccCCcccccccccccccccc
Q 042875 224 LEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKL-PDNIGNLESLRHISAAGSAISQ 289 (432)
Q Consensus 224 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~ 289 (432)
++.+++|+.|++++|.++.+| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+..
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 482 LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 555555555555555555544 4555555555555555444433 4444555555555555554443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=2.9e-14 Score=122.66 Aligned_cols=149 Identities=22% Similarity=0.274 Sum_probs=85.7
Q ss_pred cEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA 239 (432)
Q Consensus 160 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (432)
+.++..++++..+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555566665443 567777777766665555666666667777776665543333445566666666666666
Q ss_pred ccccCcc-cCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCC
Q 042875 240 ITELPSS-FENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGL 311 (432)
Q Consensus 240 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 311 (432)
++.++.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6655432 455666666666665544 445555555666666666655554432 3444555555555555433
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.2e-14 Score=134.19 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=45.1
Q ss_pred ccEEEeccccccccccc-cc-CCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875 159 ITRLYLDQSAIEEVPSS-IE-CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD 236 (432)
Q Consensus 159 L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (432)
++.|++++|.+..++.. +. .+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44455554444444332 22 44444444444444433333334444444444444444333333334444444444444
Q ss_pred ccccccc-CcccCCCCCccEEeecCCC
Q 042875 237 GTAITEL-PSSFENLPGLEELFVSDCS 262 (432)
Q Consensus 237 ~~~~~~~-~~~~~~l~~L~~L~l~~~~ 262 (432)
+|.++.+ +..+..+++|+.|++++|.
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCc
Confidence 4444432 2334444444444444443
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=5.3e-14 Score=120.18 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=92.8
Q ss_pred ccEEEeccccccccc--ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeec
Q 042875 159 ITRLYLDQSAIEEVP--SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLD 236 (432)
Q Consensus 159 L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (432)
++.|++++|.+..++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 445555555555542 236677778888888777666555567777788888888777766666667777888888888
Q ss_pred ccccccc-CcccCCCCCccEEeecCCCCCCccccccCCccccccccccccccc
Q 042875 237 GTAITEL-PSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAIS 288 (432)
Q Consensus 237 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 288 (432)
+|.++.+ +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8877755 556777778888888887777766777777788888888877665
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=2.8e-14 Score=116.59 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=81.4
Q ss_pred CCccEEeecCCCCC-CccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875 251 PGLEELFVSDCSKL-DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY 329 (432)
Q Consensus 251 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (432)
++++.|++++|.+. +.+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+....+. .+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEEe
Confidence 55666666666554 34555555666666666666666544 4555566666666666665443333 233466777777
Q ss_pred eeccCCCCCc--hhhhcCCCCCEEEeeCCCCcccCh----hccCCCCCCeeeccCCCC
Q 042875 330 IMNCAVMEIP--QEIAYLSSLKSLDLRGNNFESLPA----SIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 330 l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~~~~ 381 (432)
+++|.+..++ ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777777654 556677777777777777776665 566777777777777664
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=4.5e-14 Score=130.35 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=109.7
Q ss_pred cceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCcccccCCccc-CcccCceEeccCCccCCcCC-CCCCCCCce
Q 042875 62 LRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKACVPSSIQ-NFKYLSALSFEGCKSLRSFP-SNLHFVCPV 139 (432)
Q Consensus 62 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 139 (432)
-+.++++++.++.+|..+ ...++.|++++|.++.+ .+..+. .+++|+.|++++|.+....+ .+..+++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l-------~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRL-------RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEE-------CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCcc-------ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 357788888888887654 24688888888888754 223355 77888888888876544333 345566666
Q ss_pred EEEecCcccccccCCCCCCccEEEeccccccccc-ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcc
Q 042875 140 TINFSYCVTLIEFPQISGKITRLYLDQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLE 218 (432)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 218 (432)
+|++++|.+. .++ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 92 ~L~Ls~N~l~---------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 92 YLDLSSNHLH---------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp EEECCSSCCC---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEECCCCcCC---------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 6666665433 222 245667777777777777666656667777777777777766554
Q ss_pred cchHhh---hcCCCCCeeeeccccccccCc-ccCCCCC--ccEEeecCCCCC
Q 042875 219 RFPEIL---EKMEHLKRINLDGTAITELPS-SFENLPG--LEELFVSDCSKL 264 (432)
Q Consensus 219 ~~~~~l---~~l~~L~~L~l~~~~~~~~~~-~~~~l~~--L~~L~l~~~~~~ 264 (432)
..+..+ ..+++|+.|++++|.++.++. .+..++. ++.|++.+|++.
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 333333 456777777777777775552 3444444 356677766554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=2.9e-14 Score=116.45 Aligned_cols=135 Identities=20% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCCCeeeecccccc--ccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccc-cCccccCCCCCcEEe
Q 042875 228 EHLKRINLDGTAIT--ELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQ-LPSSVADSNALLILD 304 (432)
Q Consensus 228 ~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~ 304 (432)
+++++|++++|.++ .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 4444445555555555555544332 344555566666666665554 444455566677777
Q ss_pred ccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch----hhhcCCCCCEEEeeCCCCcccChh
Q 042875 305 FSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ----EIAYLSSLKSLDLRGNNFESLPAS 364 (432)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~l~~~ 364 (432)
+++|.+.+......+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 766654332222335567788888888888877665 677888888888888888777653
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=5.9e-14 Score=112.15 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=76.1
Q ss_pred CCccEEeecCCCCC-CccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEE
Q 042875 251 PGLEELFVSDCSKL-DKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLY 329 (432)
Q Consensus 251 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (432)
++++.|++++|.+. +.+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.++. .+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEE
Confidence 44555555555544 34454455555666666665555544 4455566666666666665443333 233466777777
Q ss_pred eeccCCCCCc--hhhhcCCCCCEEEeeCCCCcccCh----hccCCCCCCeeecc
Q 042875 330 IMNCAVMEIP--QEIAYLSSLKSLDLRGNNFESLPA----SIKQLSRLCSLDLR 377 (432)
Q Consensus 330 l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~ 377 (432)
+++|.++.++ ..++.+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776643 566777777777777777776654 56677777777665
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=7.5e-15 Score=147.38 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=79.0
Q ss_pred ccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcc
Q 042875 196 ISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLE 275 (432)
Q Consensus 196 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 275 (432)
.+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 3455666677777777776554 5555556677777777777777777766777777777777777665 5666677777
Q ss_pred cccccccccccccccCccccCCCCCcEEeccCCCCCCCCch
Q 042875 276 SLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPR 316 (432)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 316 (432)
+|++|++++|.+..+|..++.+++|+.|++++|.+.+..+.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 77777777777777776677777777777777776554444
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=2.9e-13 Score=123.25 Aligned_cols=258 Identities=12% Similarity=0.087 Sum_probs=131.1
Q ss_pred hhcc-cccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--C--------CCCceeeeeccc
Q 042875 24 AFTN-MSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--K--------PKNLVELNLRFS 92 (432)
Q Consensus 24 ~~~~-l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~--------~~~L~~L~l~~~ 92 (432)
.+.. +++|+.|||++|++....... +.++ .++.+.+..+ .+|... + |++|++|++..
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~~~~~-------~~~~-~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~- 110 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMYSGKA-------GTYP-NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE- 110 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCEEESS-------SSSG-GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-
T ss_pred HHHHhhccCeEEecCcceeEEecCcc-------cccc-cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-
Confidence 3444 677888888888876210111 1111 1222222222 233332 4 67777777776
Q ss_pred cccccCCCcccccCCcccCcccCceEeccCCccCCcCC-CCCCCCCceEEEecCcccc---cccC----CCCCCcc-EEE
Q 042875 93 KVEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP-SNLHFVCPVTINFSYCVTL---IEFP----QISGKIT-RLY 163 (432)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~----~~~~~L~-~L~ 163 (432)
.++.+..+. |..+++|+.+++.++....--+ .+..+.++..+........ ..+. .....++ .+.
T Consensus 111 ~i~~I~~~a-------F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~ 183 (329)
T 3sb4_A 111 KIKNIEDAA-------FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ 183 (329)
T ss_dssp TCCEECTTT-------TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEE
T ss_pred cccchhHHH-------hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEE
Confidence 665543333 6777777777777654432212 3444555655555442110 0000 0011222 122
Q ss_pred ecccccccccc----cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875 164 LDQSAIEEVPS----SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA 239 (432)
Q Consensus 164 l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (432)
+... ..++. ......+++.+.+.+.-...........+++|+.+++.+|.+......+|..+.+|+++++..+
T Consensus 184 ~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 184 VGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp ECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred ecCC--CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence 2211 11111 1112344555555543211111111123677777777776554444456667777777777766
Q ss_pred ccccC-cccCCCCCcc-EEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEe
Q 042875 240 ITELP-SSFENLPGLE-ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILD 304 (432)
Q Consensus 240 ~~~~~-~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 304 (432)
++.++ .+|..+++|+ .+.+.+ .....-+.++.++++|+.+++..+.+..++. .+..+++|+.+.
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55443 3566777777 777776 3433334567777777777777777765543 566677777764
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=2.6e-14 Score=130.25 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=29.6
Q ss_pred CCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeee
Q 042875 179 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRIN 234 (432)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 234 (432)
+++|+.+++.. .....-..+|.+|++|+.+++.++......+.+|..+.++..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 66666666666 44433344566666677776666554443444444444444443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2e-13 Score=109.04 Aligned_cols=123 Identities=20% Similarity=0.261 Sum_probs=72.9
Q ss_pred CccEEEecccccc--cccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875 158 KITRLYLDQSAIE--EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235 (432)
Q Consensus 158 ~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (432)
+++.|++.++.+. .+|..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444444 5555666677777777777765443 45666777777777777666556666666777777777
Q ss_pred ccccccccC--cccCCCCCccEEeecCCCCCCccc---cccCCccccccccc
Q 042875 236 DGTAITELP--SSFENLPGLEELFVSDCSKLDKLP---DNIGNLESLRHISA 282 (432)
Q Consensus 236 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l 282 (432)
++|.++.++ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 777666543 455566666666666665443322 23444455555544
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=4.5e-14 Score=141.71 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=90.9
Q ss_pred ccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhh
Q 042875 240 ITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLL 319 (432)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 319 (432)
+...+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+..+|..++.+++|+.|+|++|.+. .+|.. +
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~ 289 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-L 289 (727)
T ss_dssp ---------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-G
T ss_pred eecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-h
Confidence 3334455666677777777776654 4555555677777777777777777777777777777777777754 45544 4
Q ss_pred cCCCCccEEEeeccCCCCCchhhhcCCCCCEEEeeCCCCc-ccChhccCCC-CCCeeeccCCCCCcccCCCCCCccEEec
Q 042875 320 LGLSSLGLLYIMNCAVMEIPQEIAYLSSLKSLDLRGNNFE-SLPASIKQLS-RLCSLDLRRCNMLQSLPALPLCLKYLHL 397 (432)
Q Consensus 320 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~L~~L~l 397 (432)
..+++|+.|++++|.++.+|..++.+++|+.|+|++|.++ .+|..+.... .+..+++++|.+...+|. .|+.|++
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l 366 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEI 366 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C------
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEe
Confidence 4667777777777777777777777788888888888777 3444443221 112356677766655553 4555555
Q ss_pred cCC
Q 042875 398 TGC 400 (432)
Q Consensus 398 ~~c 400 (432)
.++
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=3e-13 Score=111.30 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=79.7
Q ss_pred CCCCccEEeecCCCCCCccccccCCc-ccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccE
Q 042875 249 NLPGLEELFVSDCSKLDKLPDNIGNL-ESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGL 327 (432)
Q Consensus 249 ~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 327 (432)
.+++++.|++++|.+.. ++. +..+ ++|+.|++++|.+..+ ..+..+++|++|++++|.+. .++...+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 44555555555554432 222 2222 3566666666655544 44555666666666666543 233333446677777
Q ss_pred EEeeccCCCCCch--hhhcCCCCCEEEeeCCCCcccChh----ccCCCCCCeeeccCCCC
Q 042875 328 LYIMNCAVMEIPQ--EIAYLSSLKSLDLRGNNFESLPAS----IKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 328 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l~~~----~~~l~~L~~L~l~~~~~ 381 (432)
|++++|.+..+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777665 667777888888888877777664 67777788777777764
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=1.9e-12 Score=108.04 Aligned_cols=119 Identities=23% Similarity=0.260 Sum_probs=48.1
Q ss_pred EEecccccccccccccCCCCCCEEeeccccccccccc-hhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875 162 LYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIST-RFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI 240 (432)
Q Consensus 162 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 240 (432)
+++++++++.+|..+.. +++.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++
T Consensus 13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 33444444444443321 445555555443332221 234444444444444444433344444444444444444444
Q ss_pred cccCc-ccCCCCCccEEeecCCCCCCccccccCCccccccccc
Q 042875 241 TELPS-SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISA 282 (432)
Q Consensus 241 ~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 282 (432)
+.++. .+..+++|++|++++|.+.+..|..+..+++|+++++
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 43222 2333444444444444333333333333333333333
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=6e-13 Score=109.47 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccc-cCCCCCcEEecc
Q 042875 228 EHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSV-ADSNALLILDFS 306 (432)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~ 306 (432)
.+|++|++++|.++.++......++|+.|++++|.+.+. ..+..+++|++|++++|.+..++..+ ..+++|++|+++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 344444444444443332222222455555555443332 23445555555555555555444333 556666666666
Q ss_pred CCCCCCCCch-hhhcCCCCccEEEeeccCCCCCchh----hhcCCCCCEEEeeCCCCc
Q 042875 307 RCKGLVSLPR-SLLLGLSSLGLLYIMNCAVMEIPQE----IAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 307 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~n~l~ 359 (432)
+|.+ +.++. ..+..+++|+.|++++|.+..+|.. +..+++|+.|++++|...
T Consensus 97 ~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6654 33332 2344677788888888877776664 778888888888888765
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.32 E-value=1.9e-10 Score=107.35 Aligned_cols=312 Identities=11% Similarity=0.066 Sum_probs=149.6
Q ss_pred ecccCchhhcccccceeeeeccccccccccccccCCc-cccchhhhcceeecCCCCCCCCCCCC--CCCCceeeeecccc
Q 042875 17 CINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPN-GLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSK 93 (432)
Q Consensus 17 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~ 93 (432)
+..+...+|.+|.+|+.+.+..+ +.. +.. .+..+. +|+.+++..+ ++.++... ++.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~-------I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~- 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VRE-------IGEFAFENCS-KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM- 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCE-------ECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccC-------cchhHhhCCC-CCcEEEeCCC-ceEccchhhcccccchhhcccCc-
Confidence 45566677778888887777532 432 222 344454 7777777543 44444443 6666766665433
Q ss_pred ccccCCCcccccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccccccccc
Q 042875 94 VEQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVP 173 (432)
Q Consensus 94 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 173 (432)
+..+... .|..+..++.......... .-..+..|.+|+.+.+..+... --.
T Consensus 128 l~~i~~~-------aF~~~~~~~~~~~~~~~~i-~~~aF~~c~~L~~i~l~~~~~~---------------------I~~ 178 (394)
T 4fs7_A 128 LKSIGVE-------AFKGCDFKEITIPEGVTVI-GDEAFATCESLEYVSLPDSMET---------------------LHN 178 (394)
T ss_dssp CCEECTT-------TTTTCCCSEEECCTTCCEE-CTTTTTTCTTCCEEECCTTCCE---------------------ECT
T ss_pred eeeecce-------eeecccccccccCcccccc-chhhhcccCCCcEEecCCccce---------------------ecc
Confidence 2222111 1333332222222211110 1113445666666665432211 111
Q ss_pred ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCc
Q 042875 174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGL 253 (432)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 253 (432)
..+..+.+|+.+.+..+ ........+..+..|+.+.+..+.. .+........+|+.+.+....-.--...+..+..+
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSC
T ss_pred ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCCceecccccccccccc
Confidence 24455566666665543 2222223455566666655544221 11122223345555555432211112334555666
Q ss_pred cEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeecc
Q 042875 254 EELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333 (432)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (432)
+.+.+..+. .......+..+..++.+......+. ...+..+.+|+.+.+..+ ...+....|.++.+|+.+.+..+
T Consensus 256 ~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 256 ESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp CEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred eeEEcCCCc-ceeeccccccccccceeccCceeec--cccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc
Confidence 666665432 1112223444555555544333222 123445566666666443 33344444556667777766432
Q ss_pred CCCCC-chhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccC
Q 042875 334 AVMEI-PQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRR 378 (432)
Q Consensus 334 ~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~ 378 (432)
+..+ ..++..|.+|+.+.+..+ ++.+. ..+..|++|+.+.+..
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4443 345666777777777655 55442 4566777777777654
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=1.4e-10 Score=107.95 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=66.1
Q ss_pred ecccCchhhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC--CCCCceeeeeccccc
Q 042875 17 CINLDPGAFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF--KPKNLVELNLRFSKV 94 (432)
Q Consensus 17 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~l 94 (432)
+..+...+|.++ +|+.+++..+ +. .+....+.-. +|+.+.+.. .++.++... +|++|+.+++..|.+
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~-------~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l 192 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LK-------SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI 192 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CC-------EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC
T ss_pred cCEehHhhcccC-CccEEEeCCC-cc-------EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc
Confidence 555666777775 6777777654 43 2333322222 677777765 555555443 777888888887777
Q ss_pred cccCCCcccccCCcccCcccCceEeccCCccCCcCC--CCCCCCCceEEEecCc
Q 042875 95 EQPWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFP--SNLHFVCPVTINFSYC 146 (432)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~ 146 (432)
+.+..+. |. +.+|+.+.+..+ ...++ .+.+|++|+.+.+..+
T Consensus 193 ~~I~~~a-------F~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 193 TKLPAST-------FV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp SEECTTT-------TT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred eEechhh-------Ee-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence 7644333 33 567777777643 33333 4556777777777653
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=1e-11 Score=103.52 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=92.7
Q ss_pred CccEEEecccccccccc--cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeee
Q 042875 158 KITRLYLDQSAIEEVPS--SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINL 235 (432)
Q Consensus 158 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (432)
+++.|++.+|.+..++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 56666666666666665 3788999999999999888877888999999999999999888777777888999999999
Q ss_pred cccccccc-CcccCCCCCccEEeecCCCCCCccc
Q 042875 236 DGTAITEL-PSSFENLPGLEELFVSDCSKLDKLP 268 (432)
Q Consensus 236 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~ 268 (432)
++|+++.+ |..+..+++|++|++++|++....+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999954 6678899999999999998876543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.3e-11 Score=102.97 Aligned_cols=107 Identities=21% Similarity=0.380 Sum_probs=73.3
Q ss_pred CccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecc
Q 042875 158 KITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDG 237 (432)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (432)
+++.|++.+|.+..+|..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 55666666666666666777777777777777776665556677777777777777766665555667777777777777
Q ss_pred ccccccCc-ccCCCCCccEEeecCCCCC
Q 042875 238 TAITELPS-SFENLPGLEELFVSDCSKL 264 (432)
Q Consensus 238 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 264 (432)
|.++.++. .+..+++|+.|++++|++.
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77776654 3566677777777776554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.5e-11 Score=102.48 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=63.1
Q ss_pred EEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccc
Q 042875 161 RLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAI 240 (432)
Q Consensus 161 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 240 (432)
.++++++++..+|..+. ++++.|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444555555554432 45666666665543 3444455555555555555554444444444555555555555555
Q ss_pred cccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCc-cccCCCCCcEEeccCCCCC
Q 042875 241 TELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPS-SVADSNALLILDFSRCKGL 311 (432)
Q Consensus 241 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 311 (432)
+ ...+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|...
T Consensus 91 ~-----------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 R-----------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp C-----------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred C-----------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 4 3333344444555555555555544433 2444555666666655533
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=3.5e-14 Score=119.29 Aligned_cols=125 Identities=24% Similarity=0.269 Sum_probs=64.5
Q ss_pred hhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcE
Q 042875 223 ILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLI 302 (432)
Q Consensus 223 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 302 (432)
.+..+++|++|++++|.++.+| .+..+++|+.|++++| .+..++..+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n------------------------~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN------------------------LIKKIENLDAVADTLEE 97 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE------------------------EECSCSSHHHHHHHCSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC------------------------CcccccchhhcCCcCCE
Confidence 4555555555555555555444 3444444444444444 33333333333344444
Q ss_pred EeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCch--hhhcCCCCCEEEeeCCCCccc-Ch----------hccCCC
Q 042875 303 LDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQ--EIAYLSSLKSLDLRGNNFESL-PA----------SIKQLS 369 (432)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l-~~----------~~~~l~ 369 (432)
|++++|.+.+ ++ .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++.. |. .+..++
T Consensus 98 L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 98 LWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 4444443222 22 13345566666666666666443 456667777777777766532 21 256677
Q ss_pred CCCeee
Q 042875 370 RLCSLD 375 (432)
Q Consensus 370 ~L~~L~ 375 (432)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777665
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.4e-11 Score=99.86 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=24.2
Q ss_pred CCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccc
Q 042875 181 DLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAIT 241 (432)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 241 (432)
+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 4444444444433322223334444444444444333222222333444444444444443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.5e-11 Score=98.89 Aligned_cols=127 Identities=20% Similarity=0.307 Sum_probs=66.0
Q ss_pred CeeeeccccccccCcccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCC
Q 042875 231 KRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKG 310 (432)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 310 (432)
+.++++++.++.+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+..++.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------ 69 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------------ 69 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT------------------
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh------------------
Confidence 45555555555555322 2456666666665544333334455555555555555443332
Q ss_pred CCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCCCCcccChh-ccCCCCCCeeeccCCCCCc
Q 042875 311 LVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGNNFESLPAS-IKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~ 383 (432)
..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|++..
T Consensus 70 ------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 70 ------GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 2233445555555555555553332 35556666666666666655443 3456666666666665443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=7e-14 Score=117.47 Aligned_cols=141 Identities=13% Similarity=0.008 Sum_probs=88.8
Q ss_pred hhcccccceeeeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCCCCCCceeeeeccccccccCCCccc
Q 042875 24 AFTNMSNLRLLKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNFKPKNLVELNLRFSKVEQPWEGEKA 103 (432)
Q Consensus 24 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 103 (432)
.+...+.++.++++.+.+.+.......+|..+..++ +|++|++++|.++.+|...++++|++|++++|.++.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~------- 84 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK------- 84 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS-------
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCCCccc-------
Confidence 466777888888888888762111122223667775 888888888888777733377888888888888764
Q ss_pred ccCCcccCcccCceEeccCCccCCcCCCCCCCCCceEEEecCcccccccCCCCCCccEEEeccccccccc--ccccCCCC
Q 042875 104 CVPSSIQNFKYLSALSFEGCKSLRSFPSNLHFVCPVTINFSYCVTLIEFPQISGKITRLYLDQSAIEEVP--SSIECLTD 181 (432)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~ 181 (432)
+|..+..+++|+.|++++|...+ ++.+..+++|++|++++|.+. .++ ..+..+++
T Consensus 85 -l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~---------------------~~~~~~~l~~l~~ 141 (198)
T 1ds9_A 85 -IENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKIT---------------------NWGEIDKLAALDK 141 (198)
T ss_dssp -CSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECC---------------------CHHHHHHHTTTTT
T ss_pred -ccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCC---------------------chhHHHHHhcCCC
Confidence 55556667778888877765433 333334455555555554332 222 24556666
Q ss_pred CCEEeecccccccc
Q 042875 182 LEVLDLRDCKRLKR 195 (432)
Q Consensus 182 L~~L~l~~~~~~~~ 195 (432)
|++|++++|.+...
T Consensus 142 L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 142 LEDLLLAGNPLYND 155 (198)
T ss_dssp CSEEEECSCHHHHH
T ss_pred CCEEEecCCccccc
Confidence 77777776665443
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=5.3e-09 Score=97.28 Aligned_cols=233 Identities=12% Similarity=0.124 Sum_probs=143.6
Q ss_pred cccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCcc
Q 042875 175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLE 254 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 254 (432)
+|.++ +|+.+.+..+ ....-..+|.++ +|+.+.+.. .....-..+|..+.+|+.+++..+.++.++.....+.+|+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 45554 6777777664 333233345553 588888775 3333334567778888888888887877766555567888
Q ss_pred EEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccC
Q 042875 255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA 334 (432)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 334 (432)
.+.+..+ ....-..++.++++|+.+.+..+ +..+........+|+.+.+..+ ...+....|..+++|+.+.+.++.
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSC
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCcc
Confidence 8888754 33333455677888888888764 3433333222267888877442 344555566678888888887776
Q ss_pred CC-----C-CchhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccC----CCCCCccEEeccCCCCc
Q 042875 335 VM-----E-IPQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLP----ALPLCLKYLHLTGCNML 403 (432)
Q Consensus 335 ~~-----~-~~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~c~~l 403 (432)
+. . -...+..|++|+.+.+.+ .++.++ ..+..|++|+.+.+..+ ++.++ ..+ +|+.+++.++. .
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~ 357 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-P 357 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-C
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-C
Confidence 54 2 334567788888888874 466543 45677888888888553 34443 223 78888887753 3
Q ss_pred cccCC-----CCCccceecccc
Q 042875 404 RSLPE-----LPLCLQELDATN 420 (432)
Q Consensus 404 ~~l~~-----~~~~L~~L~l~~ 420 (432)
..++. ....++.|++..
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECG
T ss_pred cccccccccCCCCCccEEEeCH
Confidence 33322 223456666654
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=5.7e-09 Score=97.29 Aligned_cols=215 Identities=16% Similarity=0.118 Sum_probs=148.5
Q ss_pred ccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccccccccCcccCCCCCc
Q 042875 174 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITELPSSFENLPGL 253 (432)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 253 (432)
.++.++++|+.+.+..+ ........|..+.+|+.+.+..+ .......++..+..|+.+.+..+... +.........|
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence 46888999999999764 23333456788999999999764 33333456778888998887665333 33344556789
Q ss_pred cEEeecCCCCCCccccccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeecc
Q 042875 254 EELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNC 333 (432)
Q Consensus 254 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (432)
+.+.+... ........+..+..++.+.+..+...-....+..+..++.+...... ++...+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee----eccccccccccccccccccc
Confidence 99988754 22222345667888988888776544334556777888888775543 34445668899999998654
Q ss_pred CCCCC-chhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccCCCCCcccC----CCCCCccEEeccCC
Q 042875 334 AVMEI-PQEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRRCNMLQSLP----ALPLCLKYLHLTGC 400 (432)
Q Consensus 334 ~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~c 400 (432)
+..+ ..++..|.+|+.+++..+ ++.+. ..+..|++|+.+.+..+ ++.+. ..+.+|+.+++..+
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 5554 445788999999999754 66554 56789999999999765 45554 23467888887653
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=4.7e-10 Score=91.62 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=59.0
Q ss_pred cccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCC
Q 042875 278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGN 356 (432)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n 356 (432)
+.++++++.+..+|..+. +++++|++++|.+.+ ++...+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 344555555555544332 556666666655333 2222344566666666666666665544 356667777777777
Q ss_pred CCcccChh-ccCCCCCCeeeccCCCCC
Q 042875 357 NFESLPAS-IKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 357 ~l~~l~~~-~~~l~~L~~L~l~~~~~~ 382 (432)
+++.+|.. +..+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666553 566667777777776643
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=6.7e-10 Score=90.40 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=53.2
Q ss_pred cccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCCchh-hhcCCCCCEEEeeCC
Q 042875 278 RHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEIPQE-IAYLSSLKSLDLRGN 356 (432)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n 356 (432)
+.++++++.+..+|..+ .+++++|++++|.+....+ ..+..+++|+.|++++|++..++.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34444444444444333 2455555555554332222 2234555666666666666664443 355666666666666
Q ss_pred CCcccCh-hccCCCCCCeeeccCCCC
Q 042875 357 NFESLPA-SIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 357 ~l~~l~~-~~~~l~~L~~L~l~~~~~ 381 (432)
+++.+|+ .+..+++|++|++++|++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 6665544 355666666666666654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=7.1e-10 Score=90.25 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=78.6
Q ss_pred ccEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeeccc
Q 042875 159 ITRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGT 238 (432)
Q Consensus 159 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (432)
.+.++++++.+..+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3456666666777776653 67888888888777766777778888888888887776555556677888888888888
Q ss_pred cccccCc-ccCCCCCccEEeecCCCCCCc
Q 042875 239 AITELPS-SFENLPGLEELFVSDCSKLDK 266 (432)
Q Consensus 239 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~ 266 (432)
+++.++. .+..+++|+.|++++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8887665 467788888888888876543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=7.3e-10 Score=90.51 Aligned_cols=104 Identities=21% Similarity=0.299 Sum_probs=73.2
Q ss_pred cEEEecccccccccccccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875 160 TRLYLDQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA 239 (432)
Q Consensus 160 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (432)
+.+++.++++..+|..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666666776553 677888888877766666677777788888888776655444455677788888888887
Q ss_pred ccccCcc-cCCCCCccEEeecCCCCCC
Q 042875 240 ITELPSS-FENLPGLEELFVSDCSKLD 265 (432)
Q Consensus 240 ~~~~~~~-~~~l~~L~~L~l~~~~~~~ 265 (432)
++.++.. +..+++|+.|++++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 7766654 6777777888877776543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=4.7e-08 Score=91.06 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=75.5
Q ss_pred cccCCCCCccEEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCC
Q 042875 245 SSFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLS 323 (432)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 323 (432)
.++..+..|+.+.+.+.. .......+.++..|+.+.+.. .+..++ ..+..|.+|+.+.+..+ ...+....|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 345666777777765432 222233455667777777643 233222 34666788888887653 4455555677888
Q ss_pred CccEEEeeccCCCCC-chhhhcCCCCCEEEeeCCCCcccChhccCCCCCCeeeccCC
Q 042875 324 SLGLLYIMNCAVMEI-PQEIAYLSSLKSLDLRGNNFESLPASIKQLSRLCSLDLRRC 379 (432)
Q Consensus 324 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~~ 379 (432)
+|+.+.+-.+ ++.+ ..++..|.+|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 8999888543 5554 3567889999999998874331 34556778887777654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=2.8e-11 Score=111.49 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=19.2
Q ss_pred CCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc
Q 042875 322 LSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 322 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
.++|++|++++|.++. ++..+...++|++|++++|.++
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3455555555555543 2233344455555555555554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=4.8e-11 Score=109.96 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=108.4
Q ss_pred CCCCCeeeeccccccc-----cCcccC-CCCCccEEeecCCCCCCcccccc-CCcccccccccccccccc-----cCccc
Q 042875 227 MEHLKRINLDGTAITE-----LPSSFE-NLPGLEELFVSDCSKLDKLPDNI-GNLESLRHISAAGSAISQ-----LPSSV 294 (432)
Q Consensus 227 l~~L~~L~l~~~~~~~-----~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-----~~~~~ 294 (432)
+++++++++++|.++. +...+. ..++|++|++++|.+.......+ ..+++|++|++++|.+.. +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4689999999999872 233333 34689999999997754333222 245788999999998862 11222
Q ss_pred -cCCCCCcEEeccCCCCCCCCchh---hhcCCCCccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCcc-----
Q 042875 295 -ADSNALLILDFSRCKGLVSLPRS---LLLGLSSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFES----- 360 (432)
Q Consensus 295 -~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~----- 360 (432)
...++|++|++++|.+....... .+...++|++|++++|.++. ++..+..+++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 34678899999888754322111 12456788999999888876 34556777889999999988872
Q ss_pred cChhccCCCCCCeeeccCCCCCc
Q 042875 361 LPASIKQLSRLCSLDLRRCNMLQ 383 (432)
Q Consensus 361 l~~~~~~l~~L~~L~l~~~~~~~ 383 (432)
+...+...++|++|++++|++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 34455677888999999888644
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.95 E-value=1e-07 Score=88.72 Aligned_cols=106 Identities=18% Similarity=0.278 Sum_probs=53.6
Q ss_pred ccCCcccccccccccccccccCccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccCCCCC-chhhhcCCCC
Q 042875 270 NIGNLESLRHISAAGSAISQLPSSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCAVMEI-PQEIAYLSSL 348 (432)
Q Consensus 270 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L 348 (432)
++..+..|+.+.+..+...--...+..++.|+.+.+.. ....++...|.++.+|+.+.+..+ ++.+ ..++..|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 34555666666554433222223445556666666542 133344444555666666666432 3332 2345556666
Q ss_pred CEEEeeCCCCcccC-hhccCCCCCCeeeccCC
Q 042875 349 KSLDLRGNNFESLP-ASIKQLSRLCSLDLRRC 379 (432)
Q Consensus 349 ~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~~ 379 (432)
+.+.+..+ ++.+. ..+.+|++|+.+.+.++
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 66666443 44332 34556666666666554
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=6.2e-09 Score=95.08 Aligned_cols=62 Identities=13% Similarity=0.263 Sum_probs=36.4
Q ss_pred CCCCccEEEeeccCCCC-Cchhh---hcCCCCCEEEeeCCCCcc-----cChhccCCCCCCeeeccCCCCC
Q 042875 321 GLSSLGLLYIMNCAVME-IPQEI---AYLSSLKSLDLRGNNFES-----LPASIKQLSRLCSLDLRRCNML 382 (432)
Q Consensus 321 ~~~~L~~L~l~~~~~~~-~~~~~---~~~~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~~~~~ 382 (432)
.+++|+.|++.+|.+.. .+..+ ..+++|++|+|+.|.++. ++..+..+++|+.|++++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35667777776666654 22222 245667777777776662 3334455677777777776543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=2.7e-08 Score=91.02 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=63.4
Q ss_pred EEeecCCCCCCccccccCCccccccccccc-ccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEeec
Q 042875 255 ELFVSDCSKLDKLPDNIGNLESLRHISAAG-SAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMN 332 (432)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 332 (432)
.++.++++....+|. +..+.+|++|++++ |.+..++ ..+..+++|+.|+|++|.+.+ ++...+..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCC
Confidence 345555423334666 66777777777775 7776555 356667777777777776433 3333455667777777777
Q ss_pred cCCCCCchhhhcCCCCCEEEeeCCCCc
Q 042875 333 CAVMEIPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
|.+..+|........|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 777766554333333777777777665
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=3.2e-08 Score=90.57 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=80.0
Q ss_pred EEeccc-ccccccccccCCCCCCEEeecc-ccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccc
Q 042875 162 LYLDQS-AIEEVPSSIECLTDLEVLDLRD-CKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTA 239 (432)
Q Consensus 162 L~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (432)
+++.++ ++..+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 6677887 88888889999986 77666666778888899999999888777777788888899999999998
Q ss_pred ccccCcccCCCCCccEEeecCCCCCC
Q 042875 240 ITELPSSFENLPGLEELFVSDCSKLD 265 (432)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~l~~~~~~~ 265 (432)
++.+|........|+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 88777654444448899998887754
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=2.1e-08 Score=91.56 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=83.9
Q ss_pred hcCCCCccEEEecCccC---------cccchHhhhcCCCCCeeeeccccccccCcccCCCCCccEEeecCCCCCCccccc
Q 042875 200 FCKLRSLVDLFVNGCLN---------LERFPEILEKMEHLKRINLDGTAITELPSSFENLPGLEELFVSDCSKLDKLPDN 270 (432)
Q Consensus 200 ~~~~~~L~~L~l~~~~~---------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 270 (432)
...+++|+.|.+.+... ...+...+..+++|+.|.++++.-..++. + .+++|+.|++..|.+.......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 34567777777754321 11244555666777777776652122332 2 2567777777766543322222
Q ss_pred c--CCcccccccccccc--c------ccccCccc--cCCCCCcEEeccCCCCCCCCchhhh--cCCCCccEEEeeccCCC
Q 042875 271 I--GNLESLRHISAAGS--A------ISQLPSSV--ADSNALLILDFSRCKGLVSLPRSLL--LGLSSLGLLYIMNCAVM 336 (432)
Q Consensus 271 ~--~~l~~L~~L~l~~~--~------~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~ 336 (432)
+ ..+|+|+.|+++.+ . +..+...+ ..+++|++|++.+|...+......+ ..+++|++|+++.|.+.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 2 24667777766421 1 11111112 2456777777776664433222222 23566777777777666
Q ss_pred C-----CchhhhcCCCCCEEEeeCCCCc
Q 042875 337 E-----IPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 337 ~-----~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
. ++..+..+++|+.|++++|.++
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5 2333345667777777777665
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.67 E-value=4e-06 Score=77.55 Aligned_cols=150 Identities=12% Similarity=0.037 Sum_probs=85.6
Q ss_pred ccCCCCCCEEeeccccccccccchhcCCCCccEEEecCccCcccchHhhhcCCCCCeeeecccccccc-CcccCCCCCcc
Q 042875 176 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNGCLNLERFPEILEKMEHLKRINLDGTAITEL-PSSFENLPGLE 254 (432)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~ 254 (432)
+..+..+..+.+.... .......+..+..++.+.+... ........+..+..|+.+.+..+ ++.+ ..++..+.+++
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 3344455555444321 1222334555667777776542 22222344556677777777554 3333 23456677777
Q ss_pred EEeecCCCCCCccccccCCcccccccccccccccccC-ccccCCCCCcEEeccCCCCCCCCchhhhcCCCCccEEEee
Q 042875 255 ELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQLP-SSVADSNALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIM 331 (432)
Q Consensus 255 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 331 (432)
.+.+... ....-...+..+.+|+.+.+.++.+..+. ..+..|.+|+.+.+..+ ...+....|.++.+|+.+.+.
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 7777653 22222334667778888877776666443 45667788888887543 344555556677778877764
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.65 E-value=8.4e-06 Score=75.35 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=67.3
Q ss_pred ccCCCCCccEEeecCCCCCCccccccCCccccccccccccccccc-CccccCCCCCcEEeccCCCCCCCCchhhhcCCCC
Q 042875 246 SFENLPGLEELFVSDCSKLDKLPDNIGNLESLRHISAAGSAISQL-PSSVADSNALLILDFSRCKGLVSLPRSLLLGLSS 324 (432)
Q Consensus 246 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 324 (432)
.+..+..++.+.+..+ ........+..+..|+.+.+..+ +..+ ...+..+.+++.+.+... ...++...+.++.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 3444555555555432 11111223445555665555443 2211 223445566666666432 33344444556677
Q ss_pred ccEEEeeccCCCCCc-hhhhcCCCCCEEEeeCCCCcccC-hhccCCCCCCeeeccC
Q 042875 325 LGLLYIMNCAVMEIP-QEIAYLSSLKSLDLRGNNFESLP-ASIKQLSRLCSLDLRR 378 (432)
Q Consensus 325 L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~ 378 (432)
|+.+.+.++.+..+. .++..|.+|+.+.+..+ ++.+. ..+.+|++|+++.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777777666666533 44666777777777543 44443 3456677777666643
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=5.5e-08 Score=78.07 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=42.9
Q ss_pred CccEEEeeccCCCC-CchhhhcCCCCCEEEeeCCC-Ccc-cChhccCC----CCCCeeeccCCCCCcccC----CCCCCc
Q 042875 324 SLGLLYIMNCAVME-IPQEIAYLSSLKSLDLRGNN-FES-LPASIKQL----SRLCSLDLRRCNMLQSLP----ALPLCL 392 (432)
Q Consensus 324 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~n~-l~~-l~~~~~~l----~~L~~L~l~~~~~~~~~~----~~~~~L 392 (432)
.|+.|++++|.++. -...+..+++|+.|+|++|. ++. --..+... ++|++|++++|..++.-. ..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47777777777655 23335566777777777763 541 11223332 356666666665433211 123455
Q ss_pred cEEeccCCCCcc
Q 042875 393 KYLHLTGCNMLR 404 (432)
Q Consensus 393 ~~L~l~~c~~l~ 404 (432)
+.|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 555555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=1.2e-07 Score=78.09 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCccEEEeeccCCCC-----CchhhhcCCCCCEEEe--eCCCCc-----ccChhccCCCCCCeeeccCCCC
Q 042875 323 SSLGLLYIMNCAVME-----IPQEIAYLSSLKSLDL--RGNNFE-----SLPASIKQLSRLCSLDLRRCNM 381 (432)
Q Consensus 323 ~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l--~~n~l~-----~l~~~~~~l~~L~~L~l~~~~~ 381 (432)
++|++|++++|.+.. +...+...++|++|++ ++|.+. .+...+...++|++|++++|.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 455555555555554 3334455556666666 556555 1334444555666666665543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=4.2e-07 Score=74.79 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=56.0
Q ss_pred cccccCCCCCCEEeeccc-cccc----cccchhcCCCCccEEEecCccCccc----chHhhhcCCCCCeeeeccccccc-
Q 042875 173 PSSIECLTDLEVLDLRDC-KRLK----RISTRFCKLRSLVDLFVNGCLNLER----FPEILEKMEHLKRINLDGTAITE- 242 (432)
Q Consensus 173 ~~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~- 242 (432)
...+...+.|++|++++| .+.. .+...+...++|++|++++|.+... +...+...++|++|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345556777777888777 5533 2344455667777777777765533 33444555677777777777662
Q ss_pred ----cCcccCCCCCccEEee--cCCCCC
Q 042875 243 ----LPSSFENLPGLEELFV--SDCSKL 264 (432)
Q Consensus 243 ----~~~~~~~l~~L~~L~l--~~~~~~ 264 (432)
+...+...++|++|++ ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 3445555666667766 555443
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=2.5e-06 Score=68.36 Aligned_cols=84 Identities=12% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCcEEeccCCCCCCCCchhhhcCCCCccEEEeeccC-CCC-Cchhhhc----CCCCCEEEeeCC-CCc--ccChhccCCC
Q 042875 299 ALLILDFSRCKGLVSLPRSLLLGLSSLGLLYIMNCA-VME-IPQEIAY----LSSLKSLDLRGN-NFE--SLPASIKQLS 369 (432)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~----~~~L~~L~l~~n-~l~--~l~~~~~~l~ 369 (432)
.|++|++++|. +++.....+..+++|++|++++|. +++ ....++. +++|++|++++| +++ .+ ..+..++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 46666666665 232222233466666677776664 443 2222333 246777777776 355 22 3445677
Q ss_pred CCCeeeccCCCCCcc
Q 042875 370 RLCSLDLRRCNMLQS 384 (432)
Q Consensus 370 ~L~~L~l~~~~~~~~ 384 (432)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777765543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=1.2e-06 Score=75.71 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=63.6
Q ss_pred hhhccccccee--eeeccccccccccccccCCccccchhhhcceeecCCCCCCCCCCCC----CCCCceeeeeccccccc
Q 042875 23 GAFTNMSNLRL--LKFYVPKFYEIERFPMQLPNGLEYLPEKLRYLHWDTYPLRILPSNF----KPKNLVELNLRFSKVEQ 96 (432)
Q Consensus 23 ~~~~~l~~L~~--L~l~~~~i~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~l~~ 96 (432)
+.|...+.|+. ++++.|+.... .+.+...-..+| +|+.|+|++|.++.++... .+++|++|+|++|.++.
T Consensus 135 s~l~~dp~L~~~~l~l~~N~~~~~---~~~l~i~~~~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 135 KGLRSDPDLVAQNIDVVLNRRSCM---AATLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TTGGGCHHHHHTTCCCCTTSHHHH---HHHHHHHHHHCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred HHcCCCcchhhcCccccCCHHHHH---HHHHHHHHhhCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 45666666766 66666643311 001111113455 7888888888777655322 67788888888888765
Q ss_pred cCCCcccccCCcccCcccCceEeccCCccCCcCCC--------CCCCCCceEEEe
Q 042875 97 PWEGEKACVPSSIQNFKYLSALSFEGCKSLRSFPS--------NLHFVCPVTINF 143 (432)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~L~~L~l 143 (432)
.. . + ..+..+ +|+.|++++|...+.++. +..+|+|+.|+-
T Consensus 211 ~~--~---l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 211 ER--E---L-DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GG--G---G-GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ch--h---h-hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 31 1 1 112333 788888888777665441 334777777753
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=2.1e-05 Score=68.02 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCCccEEEeeccCCCCC---chhhhcCCCCCEEEeeCCCCcccChhccCCC--CCCeeeccCCCCCcccC
Q 042875 321 GLSSLGLLYIMNCAVMEI---PQEIAYLSSLKSLDLRGNNFESLPASIKQLS--RLCSLDLRRCNMLQSLP 386 (432)
Q Consensus 321 ~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~l~~~~~~l~--~L~~L~l~~~~~~~~~~ 386 (432)
.+++|+.|++++|.+..+ +..+..+++|+.|+|++|+++.+ ..+..++ +|++|++++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 456677777777776663 34456777777777777777754 2233344 77777777777665443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.0003 Score=57.44 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=15.3
Q ss_pred CccEEEeeccCCCC-----CchhhhcCCCCCEEEeeCCCCc
Q 042875 324 SLGLLYIMNCAVME-----IPQEIAYLSSLKSLDLRGNNFE 359 (432)
Q Consensus 324 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~ 359 (432)
.|+.|++++|.+.+ +...+..-+.|+.|+|++|.|.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34444444444443 2233333344444444444444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.78 E-value=0.00053 Score=56.00 Aligned_cols=109 Identities=12% Similarity=0.132 Sum_probs=63.1
Q ss_pred CCcccccccccccc-ccc-----ccCccccCCCCCcEEeccCCCCCCCCchhh---hcCCCCccEEEeeccCCCC-----
Q 042875 272 GNLESLRHISAAGS-AIS-----QLPSSVADSNALLILDFSRCKGLVSLPRSL---LLGLSSLGLLYIMNCAVME----- 337 (432)
Q Consensus 272 ~~l~~L~~L~l~~~-~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~----- 337 (432)
..-+.|++|+++++ .+. .+...+..-+.|+.|+|++|.+.+.....+ +..-+.|++|+|+.|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33466777777764 554 233445556677777777776543322221 1123567777777777776
Q ss_pred CchhhhcCCCCCEEEeeCCC---Cc-----ccChhccCCCCCCeeeccCCC
Q 042875 338 IPQEIAYLSSLKSLDLRGNN---FE-----SLPASIKQLSRLCSLDLRRCN 380 (432)
Q Consensus 338 ~~~~~~~~~~L~~L~l~~n~---l~-----~l~~~~~~l~~L~~L~l~~~~ 380 (432)
+...+..-+.|++|+|++|. +. .+...+..-+.|++|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 44445555667777776543 23 233445556667777766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.72 E-value=0.015 Score=44.11 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCCEEEeeCCCCcccCh-hccCCCCCCeeeccCCC
Q 042875 347 SLKSLDLRGNNFESLPA-SIKQLSRLCSLDLRRCN 380 (432)
Q Consensus 347 ~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~~~ 380 (432)
+++.|+|++|+|+.+|. .+..+++|+.|+|.+|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555555554432 23444555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.18 E-value=0.038 Score=41.80 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=16.9
Q ss_pred CceeeeeccccccccCCCcccccCCcccCcccCceEeccCCc
Q 042875 83 NLVELNLRFSKVEQPWEGEKACVPSSIQNFKYLSALSFEGCK 124 (432)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (432)
+|++|+|++|.|+.+..+ .|..+++|+.|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~-------~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPG-------LLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTT-------TGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChh-------hhhhccccCEEEecCCC
Confidence 455555555555543221 24445555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.66 E-value=40 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=17.0
Q ss_pred cccCCCCCCEEeeccccccccccchhcCCCCccEEEecC
Q 042875 175 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFVNG 213 (432)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 213 (432)
.|.+|..|+.+.|-.+ ....-..+|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4445555555555442 1222223344455555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.26 E-value=69 Score=22.26 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=5.5
Q ss_pred CCCCceeeeec
Q 042875 80 KPKNLVELNLR 90 (432)
Q Consensus 80 ~~~~L~~L~l~ 90 (432)
+|.+|+++.+-
T Consensus 18 ~c~~L~~i~iP 28 (100)
T 2lz0_A 18 GNTVIREITVQ 28 (100)
T ss_dssp TCTTCCCEEEC
T ss_pred CCCCCcEEEcC
Confidence 44555555543
Done!