AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>042877
HGHHQHAPHSKSLSRDVRAARPKFYWERIPIMKRKGAETLQIAGSSLPDCSHACGSCSPC
RLVMVSFVCASLEEAETCPMAYKCMCNNKSYPVP

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with EPF1 EPF1 EPF1 AT2G20875	protein from Arabidopsis thaliana	1.7e-27
BLAST match view associations BLAST with EPF2 EPF2 EPF2 AT1G34245	protein from Arabidopsis thaliana	2.1e-13
BLAST match view associations BLAST with CHAL CHAL CHAL AT2G30370	protein from Arabidopsis thaliana	2.3e-06
BLAST match view associations BLAST with CLL2 CLL2 CLL2 AT4G14723	protein from Arabidopsis thaliana	3.9e-05
BLAST match view associations BLAST with CLL1 CLL1 CLL1 AT3G22820	protein from Arabidopsis thaliana	0.00010

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042877
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:3436392 - symbol:EPF1 "AT2G20875" species:3702...   308  1.7e-27   1
TAIR|locus:505006168 - symbol:EPF2 "AT1G34245" species:37...   175  2.1e-13   1
TAIR|locus:2065719 - symbol:CHAL "AT2G30370" species:3702...   112  2.3e-06   1
TAIR|locus:1009023326 - symbol:CLL2 "AT4G14723" species:3...    97  3.9e-05   1
TAIR|locus:2094424 - symbol:CLL1 "AT3G22820" species:3702...    93  0.00010   1


>TAIR|locus:3436392 [details] [associations]
            symbol:EPF1 "AT2G20875" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0010375 "stomatal complex
            patterning" evidence=IMP] [GO:0010374 "stomatal complex
            development" evidence=IGI] [GO:2000122 "negative regulation of
            stomatal complex development" evidence=IMP] GO:GO:0005576
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0010374 EMBL:AC006234
            IPI:IPI00537528 RefSeq:NP_179684.1 UniGene:At.52849
            UniGene:At.69152 STRING:Q8S8I4 EnsemblPlants:AT2G20875.1
            GeneID:816621 KEGG:ath:AT2G20875 TAIR:At2g20875 eggNOG:NOG241289
            HOGENOM:HOG000240846 InParanoid:Q8S8I4 OMA:SHHHVGM PhylomeDB:Q8S8I4
            ProtClustDB:CLSN2913134 Genevestigator:Q8S8I4 GO:GO:2000122
            GO:GO:0010375 Uniprot:Q8S8I4
        Length = 104

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 53/62 (85%), Positives = 59/62 (95%)

Query:    33 KRKGAETLQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSYP 92
             +R+  +T+Q+AGS LPDCSHACGSCSPCRLVMVSFVCAS+EEAETCPMAYKCMCNNKSYP
Sbjct:    43 QRRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYP 102

Query:    93 VP 94
             VP
Sbjct:   103 VP 104


>TAIR|locus:505006168 [details] [associations]
            symbol:EPF2 "AT1G34245" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0010052 "guard cell
            differentiation" evidence=IMP] [GO:0010374 "stomatal complex
            development" evidence=IMP] [GO:0048730 "epidermis morphogenesis"
            evidence=IMP] [GO:2000122 "negative regulation of stomatal complex
            development" evidence=IMP] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005576 GO:GO:0048730 EMBL:AC007454 HOGENOM:HOG000240846
            GO:GO:2000122 EMBL:AB499311 EMBL:AY086790 IPI:IPI00518431
            RefSeq:NP_564442.1 UniGene:At.39780 STRING:Q8LC53
            EnsemblPlants:AT1G34245.1 GeneID:840324 KEGG:ath:AT1G34245
            TAIR:At1g34245 eggNOG:NOG235778 InParanoid:Q8LC53 OMA:VEMEMYP
            PhylomeDB:Q8LC53 ProtClustDB:CLSN2914950 Genevestigator:Q8LC53
            GO:GO:0010052 Uniprot:Q8LC53
        Length = 120

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query:    31 IMKRKGAET-LQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNK 89
             I K  G E  +   GSSLPDCS+ACG+CSPC+ VM+SF C+    AE+C + Y+C C  +
Sbjct:    56 ISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYRCTCRGR 112

Query:    90 SYPVP 94
              Y VP
Sbjct:   113 YYHVP 117


>TAIR|locus:2065719 [details] [associations]
            symbol:CHAL "AT2G30370" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:2000122 "negative
            regulation of stomatal complex development" evidence=IGI;IMP]
            EMBL:CP002685 GO:GO:2000122 IPI:IPI00992485 RefSeq:NP_850143.1
            UniGene:At.52976 EnsemblPlants:AT2G30370.1 GeneID:817587
            KEGG:ath:AT2G30370 OMA:HEDKDST Uniprot:F4IMT0
        Length = 230

 Score = 112 (44.5 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 26/62 (41%), Positives = 33/62 (53%)

Query:    33 KRKGAETLQIA---GSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNK 89
             + K AE  +I    GSS P CS  CG C+PC+ V V     +   AE  P A++C C NK
Sbjct:   167 RSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNK 226

Query:    90 SY 91
              Y
Sbjct:   227 LY 228


>TAIR|locus:1009023326 [details] [associations]
            symbol:CLL2 "AT4G14723" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010052 "guard cell differentiation" evidence=IMP]
            [GO:0010374 "stomatal complex development" evidence=IMP]
            GO:GO:0005576 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:Z97336
            EMBL:AL161539 EMBL:Z97337 GO:GO:0010052 EMBL:DQ487600
            IPI:IPI00656672 RefSeq:NP_001031641.1 UniGene:At.51142
            EnsemblPlants:AT4G14723.1 GeneID:3769880 KEGG:ath:AT4G14723
            KEGG:dosa:Os03t0161600-01 KEGG:dosa:Os11t0581700-01 TAIR:At4g14723
            eggNOG:NOG254545 HOGENOM:HOG000238413 OMA:RWIGQRT PhylomeDB:Q2V3I3
            ProtClustDB:CLSN2918741 Genevestigator:Q2V3I3 Uniprot:Q2V3I3
        Length = 109

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query:    44 GSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
             GSS P C   CG C PC+ V V          E  P A++C C NK +
Sbjct:    60 GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLF 107


>TAIR|locus:2094424 [details] [associations]
            symbol:CLL1 "AT3G22820" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0010052 "guard cell differentiation"
            evidence=IMP] [GO:0010374 "stomatal complex development"
            evidence=IMP] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005576
            EMBL:AB022223 GO:GO:0010052 HOGENOM:HOG000238413 EMBL:BT012590
            EMBL:BT014813 IPI:IPI00516230 RefSeq:NP_188921.1 UniGene:At.50215
            ProteinModelPortal:Q9LUH9 EnsemblPlants:AT3G22820.1 GeneID:821853
            KEGG:ath:AT3G22820 TAIR:At3g22820 eggNOG:NOG278824
            InParanoid:Q9LUH9 OMA:CEPCKAV PhylomeDB:Q9LUH9
            ProtClustDB:CLSN2913442 Genevestigator:Q9LUH9 Uniprot:Q9LUH9
        Length = 107

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query:    44 GSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
             GS  P C   CG C PC+ V V      +   E  P A++C C NK +
Sbjct:    58 GSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLF 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.131   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.47    29
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.34u 0.14s 11.48t   Elapsed:  00:00:01
  Total cpu time:  11.34u 0.14s 11.48t   Elapsed:  00:00:01
  Start:  Sat May 11 06:18:45 2013   End:  Sat May 11 06:18:46 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data