BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042877
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S8I4|EPF1_ARATH Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana
GN=EPF1 PE=2 SV=1
Length = 104
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 59/62 (95%)
Query: 33 KRKGAETLQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSYP 92
+R+ +T+Q+AGS LPDCSHACGSCSPCRLVMVSFVCAS+EEAETCPMAYKCMCNNKSYP
Sbjct: 43 QRRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYP 102
Query: 93 VP 94
VP
Sbjct: 103 VP 104
>sp|Q8LC53|EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana
GN=EPF2 PE=2 SV=1
Length = 120
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 31 IMKRKGAET-LQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNK 89
I K G E + GSSLPDCS+ACG+CSPC+ VM+SF C+ AE+C + Y+C C +
Sbjct: 56 ISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYRCTCRGR 112
Query: 90 SYPVP 94
Y VP
Sbjct: 113 YYHVP 117
>sp|C4B8C5|EPFL7_ARATH EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana
GN=EPFL7 PE=2 SV=1
Length = 172
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 43 AGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSYPVP 94
+GSS+PDCS+ACG C PC+LV++S C++ +E CP+ YKC+C K Y VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169
>sp|Q1PEY6|EPFL6_ARATH EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana
GN=EPFL6 PE=2 SV=1
Length = 156
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 40 LQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
L+ GSS P CS CG C+PC+ V V + AE P A++C C NK Y
Sbjct: 103 LRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLY 154
>sp|Q2V3I3|EPFL4_ARATH EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana
GN=EPFL4 PE=3 SV=1
Length = 109
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 44 GSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
GSS P C CG C PC+ V V E P A++C C NK +
Sbjct: 60 GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLF 107
>sp|Q9LUH9|EPFL5_ARATH EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana
GN=EPFL5 PE=3 SV=1
Length = 107
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 44 GSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
GS P C CG C PC+ V V + E P A++C C NK +
Sbjct: 58 GSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLF 105
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 35 KGAETLQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
KG T SS P+C + C C PC+ ++ + + + P + C C+NK Y
Sbjct: 458 KGDSTCISLSSSPPNCKNKCKGCQPCKPKLI--IVHPNKPQDYYPQKWVCSCHNKIY 512
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 45 SSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
SS P+C + C C PC+ ++ + + + P + C C+NK Y
Sbjct: 461 SSPPNCKNKCKGCQPCKPKLI--IVHPNQPEDYYPQRWVCSCHNKIY 505
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 35 KGAETLQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCNNKSY 91
KG T + GS P+C++ C CSPC+ +V + + E P + C + K Y
Sbjct: 458 KGNRTRILLGSRPPNCTNKCHGCSPCKAKLV--IVHRIMPQEYYPQRWMCSRHGKIY 512
>sp|P0AEW6|INGK_ECOLI Inosine-guanosine kinase OS=Escherichia coli (strain K12) GN=gsk
PE=1 SV=1
Length = 434
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 7 APHSKSLSRDVRAARPKFYWERIPIMKRKGAETLQIAGSSLPDCSHACGSCSPCRLVMVS 66
A HS + DV A Y E +K+K T Q AG ++ + H + R V++
Sbjct: 62 AGHSLVIEDDVAEA---LYQE----LKQKNLITHQFAGGTIGNTMHNYSVLADDRSVLLG 114
Query: 67 FVCASLEEAETCPMAYKCMCNNKS 90
+C+++E AY+ +CN S
Sbjct: 115 VMCSNIEIGS---YAYRYLCNTSS 135
>sp|P0AEW7|INGK_ECOL6 Inosine-guanosine kinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=gsk PE=3 SV=1
Length = 434
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 7 APHSKSLSRDVRAARPKFYWERIPIMKRKGAETLQIAGSSLPDCSHACGSCSPCRLVMVS 66
A HS + DV A Y E +K+K T Q AG ++ + H + R V++
Sbjct: 62 AGHSLVIEDDVAEA---LYQE----LKQKNLITHQFAGGTIGNTMHNYSVLADDRSVLLG 114
Query: 67 FVCASLEEAETCPMAYKCMCNNKS 90
+C+++E AY+ +CN S
Sbjct: 115 VMCSNIEIGS---YAYRYLCNTSS 135
>sp|P0AEW8|INGK_ECO57 Inosine-guanosine kinase OS=Escherichia coli O157:H7 GN=gsk PE=3
SV=1
Length = 434
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 7 APHSKSLSRDVRAARPKFYWERIPIMKRKGAETLQIAGSSLPDCSHACGSCSPCRLVMVS 66
A HS + DV A Y E +K+K T Q AG ++ + H + R V++
Sbjct: 62 AGHSLVIEDDVAEA---LYQE----LKQKNLITHQFAGGTIGNTMHNYSVLADDRSVLLG 114
Query: 67 FVCASLEEAETCPMAYKCMCNNKS 90
+C+++E AY+ +CN S
Sbjct: 115 VMCSNIEIGS---YAYRYLCNTSS 135
>sp|P34706|SDC3_CAEEL Zinc finger protein sdc-3 OS=Caenorhabditis elegans GN=sdc-3 PE=2
SV=2
Length = 2150
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 60 CRLVMVSFVCASLEEAETCPM 80
CR+V +F C S+EE ET P+
Sbjct: 1777 CRIVQANFNCKSVEEHETLPL 1797
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.131 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,408,989
Number of Sequences: 539616
Number of extensions: 975804
Number of successful extensions: 2858
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2843
Number of HSP's gapped (non-prelim): 17
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)