Query 042877
Match_columns 94
No_of_seqs 101 out of 131
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 10:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03207 stomagen; Provisional 95.4 0.011 2.3E-07 42.5 2.0 45 40-87 66-112 (113)
2 PF09749 HVSL: Uncharacterised 62.8 2.7 5.8E-05 31.8 0.2 19 76-94 220-238 (239)
3 cd01995 ExsB ExsB is a transcr 48.4 9.3 0.0002 26.4 1.0 45 16-62 114-162 (169)
4 PF10589 NADH_4Fe-4S: NADH-ubi 42.8 3.8 8.3E-05 24.4 -1.4 10 53-62 15-24 (46)
5 PF01096 TFIIS_C: Transcriptio 41.3 41 0.00088 19.2 2.8 35 53-89 2-37 (39)
6 PF05207 zf-CSL: CSL zinc fing 33.7 15 0.00032 22.6 0.1 10 80-89 17-26 (55)
7 smart00731 SprT SprT homologue 32.9 55 0.0012 22.9 2.9 12 80-91 132-144 (146)
8 PF12837 Fer4_6: 4Fe-4S bindin 32.9 6.5 0.00014 20.7 -1.4 12 52-63 7-18 (24)
9 PF08094 Toxin_24: Conotoxin T 26.1 39 0.00084 19.7 1.0 10 41-50 3-13 (33)
10 PF12797 Fer4_2: 4Fe-4S bindin 25.3 24 0.00051 18.8 0.0 11 52-62 8-18 (22)
11 PF11635 Med16: Mediator compl 25.2 39 0.00084 30.0 1.3 51 40-91 700-752 (753)
12 TIGR03831 YgiT_finger YgiT-typ 22.1 34 0.00074 18.8 0.3 12 81-92 32-44 (46)
13 PF12800 Fer4_4: 4Fe-4S bindin 21.6 49 0.0011 16.0 0.7 11 52-62 2-12 (17)
14 COG1150 HdrC Heterodisulfide r 21.5 60 0.0013 25.3 1.6 44 14-62 4-49 (195)
No 1
>PLN03207 stomagen; Provisional
Probab=95.36 E-value=0.011 Score=42.54 Aligned_cols=45 Identities=29% Similarity=0.695 Sum_probs=36.1
Q ss_pred eeccCCCCCccc-CCCCCCC-CCeeeEEeccCCCCCCCCcccceeeeecC
Q 042877 40 LQIAGSSLPDCS-HACGSCS-PCRLVMVSFVCASLEEAETCPMAYKCMCN 87 (94)
Q Consensus 40 ~~~iGS~PP~C~-~KC~~C~-PC~aVqVp~~~~~~~~seYyPl~WKCkCg 87 (94)
+..|||+-|.|. |-|.+|. -|.+.|||+.....-++.| -+||-|+
T Consensus 66 r~~igs~aptctynecrgcr~kc~~eqvpv~~~dp~nsay---hy~cvch 112 (113)
T PLN03207 66 RLMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY---HYKCVCH 112 (113)
T ss_pred hhhhcCcCCccccccccCccccccceeccccCCCCCcccc---ccccCCC
Confidence 458999999997 6899997 4999999998776555555 4778775
No 2
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=62.83 E-value=2.7 Score=31.80 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.4
Q ss_pred CcccceeeeecCCCCccCC
Q 042877 76 ETCPMAYKCMCNNKSYPVP 94 (94)
Q Consensus 76 eYyPl~WKCkCgnklf~vp 94 (94)
+.+--.=|||+||++|.||
T Consensus 220 ~~~v~~Ik~kiGn~v~~ip 238 (239)
T PF09749_consen 220 SFKVNSIKCKIGNKVFSIP 238 (239)
T ss_pred EEEeeEEEEEECCEEEEec
Confidence 4455667999999999987
No 3
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=48.44 E-value=9.3 Score=26.45 Aligned_cols=45 Identities=20% Similarity=0.497 Sum_probs=28.0
Q ss_pred cceecCccccchhhHHHHhhCccceeccCCCCCcccC----CCCCCCCCee
Q 042877 16 DVRAARPKFYWERIPIMKRKGAETLQIAGSSLPDCSH----ACGSCSPCRL 62 (94)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~g~~~~~~iGS~PP~C~~----KC~~C~PC~a 62 (94)
+..+.+|=++|++.++.+..........-| =+|.+ -||.|.||..
T Consensus 114 ~~~v~~PL~~~~K~ei~~~~~~~g~~~~~s--~sC~~~~~~~CG~C~~C~~ 162 (169)
T cd01995 114 GIKIHAPLIDLSKAEIVRLGGELGVPLELT--WSCYNGGEKHCGECDSCLL 162 (169)
T ss_pred CeEEEeCcccCCHHHHHHHHhHcCCChhhe--eeccCCCCCCCCCCHHHHH
Confidence 457889988888888765543322222211 13443 7999999964
No 4
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=42.75 E-value=3.8 Score=24.38 Aligned_cols=10 Identities=60% Similarity=1.773 Sum_probs=4.7
Q ss_pred CCCCCCCCee
Q 042877 53 ACGSCSPCRL 62 (94)
Q Consensus 53 KC~~C~PC~a 62 (94)
-|+.|.||+-
T Consensus 15 SCGkC~PCR~ 24 (46)
T PF10589_consen 15 SCGKCTPCRE 24 (46)
T ss_dssp --S--HHHHC
T ss_pred CCCCCCCcHh
Confidence 5899999963
No 5
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=41.27 E-value=41 Score=19.23 Aligned_cols=35 Identities=23% Similarity=0.553 Sum_probs=22.0
Q ss_pred CCCCCCCCeeeEEeccCCCCCCCCcccceeee-ecCCC
Q 042877 53 ACGSCSPCRLVMVSFVCASLEEAETCPMAYKC-MCNNK 89 (94)
Q Consensus 53 KC~~C~PC~aVqVp~~~~~~~~seYyPl~WKC-kCgnk 89 (94)
+|..|+.=+++-+-++..+ .+|--.+-++| .||.+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rs--aDE~~T~fy~C~~C~~~ 37 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRS--ADEPMTLFYVCCNCGHR 37 (39)
T ss_dssp --SSS-SSEEEEEEESSSS--SSSSSEEEEEESSSTEE
T ss_pred CCcCCCCCeEEEEEeeccC--CCCCCeEEEEeCCCCCe
Confidence 5788888788777666654 34556677888 77754
No 6
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=33.67 E-value=15 Score=22.63 Aligned_cols=10 Identities=30% Similarity=1.046 Sum_probs=9.0
Q ss_pred ceeeeecCCC
Q 042877 80 MAYKCMCNNK 89 (94)
Q Consensus 80 l~WKCkCgnk 89 (94)
..+.|+||+.
T Consensus 17 ~~y~CRCG~~ 26 (55)
T PF05207_consen 17 YSYPCRCGGE 26 (55)
T ss_dssp EEEEETTSSE
T ss_pred EEEcCCCCCE
Confidence 6789999998
No 7
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=32.92 E-value=55 Score=22.87 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=8.2
Q ss_pred ceeee-ecCCCCc
Q 042877 80 MAYKC-MCNNKSY 91 (94)
Q Consensus 80 l~WKC-kCgnklf 91 (94)
.-++| +|+++|-
T Consensus 132 ~~y~C~~C~g~l~ 144 (146)
T smart00731 132 SRYRCGKCGGKLI 144 (146)
T ss_pred ceEEcCCCCCEEE
Confidence 55777 7777664
No 8
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=32.86 E-value=6.5 Score=20.68 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=9.1
Q ss_pred CCCCCCCCCeee
Q 042877 52 HACGSCSPCRLV 63 (94)
Q Consensus 52 ~KC~~C~PC~aV 63 (94)
+||.+|+-|..+
T Consensus 7 ~~C~~Cg~C~~~ 18 (24)
T PF12837_consen 7 DKCIGCGDCVRV 18 (24)
T ss_pred hhCcChhHHHHh
Confidence 588889888653
No 9
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=26.06 E-value=39 Score=19.69 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=7.2
Q ss_pred eccCCC-CCcc
Q 042877 41 QIAGSS-LPDC 50 (94)
Q Consensus 41 ~~iGS~-PP~C 50 (94)
+..||+ ||.|
T Consensus 3 sgr~srcpp~c 13 (33)
T PF08094_consen 3 SGRGSRCPPQC 13 (33)
T ss_dssp B-TTSSSSSSB
T ss_pred cCCCCCCCchh
Confidence 467888 8887
No 10
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=25.32 E-value=24 Score=18.77 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=8.8
Q ss_pred CCCCCCCCCee
Q 042877 52 HACGSCSPCRL 62 (94)
Q Consensus 52 ~KC~~C~PC~a 62 (94)
+||.+|+-|+.
T Consensus 8 ~rCiGC~~C~~ 18 (22)
T PF12797_consen 8 ERCIGCGACEV 18 (22)
T ss_pred ccccCchhHHH
Confidence 68999998863
No 11
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=25.16 E-value=39 Score=30.04 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=30.3
Q ss_pred eeccCCCCCcccCCCCCCCCCeeeEEeccCCCCCCCCccccee--eeecCCCCc
Q 042877 40 LQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAY--KCMCNNKSY 91 (94)
Q Consensus 40 ~~~iGS~PP~C~~KC~~C~PC~aVqVp~~~~~~~~seYyPl~W--KCkCgnklf 91 (94)
+..||.+|.. ..+...|.-|-+|.+...+......-.-++.| +|-|||..+
T Consensus 700 k~~l~~~~~~-~~~~RrC~RC~~vs~~~~~~~s~~~~~w~~~~~R~C~CGG~W~ 752 (753)
T PF11635_consen 700 KVHLGRSPTS-TGKWRRCVRCGSVSEDEDPFTSRATKRWTMRWQRNCICGGMWV 752 (753)
T ss_pred eeeeeecccC-CCceEEeccCCCcccccCCCCcchhhhhhhheeeeeccCCeeC
Confidence 3466777644 55666666666666544443322233456666 799999654
No 12
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=22.09 E-value=34 Score=18.79 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=7.7
Q ss_pred eeeee-cCCCCcc
Q 042877 81 AYKCM-CNNKSYP 92 (94)
Q Consensus 81 ~WKCk-Cgnklf~ 92 (94)
+|+|. ||..+|+
T Consensus 32 ~~~C~~CGE~~~~ 44 (46)
T TIGR03831 32 ALVCPQCGEEYLD 44 (46)
T ss_pred ccccccCCCEeeC
Confidence 46665 7777665
No 13
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=21.58 E-value=49 Score=15.99 Aligned_cols=11 Identities=27% Similarity=0.758 Sum_probs=7.6
Q ss_pred CCCCCCCCCee
Q 042877 52 HACGSCSPCRL 62 (94)
Q Consensus 52 ~KC~~C~PC~a 62 (94)
++|..|+-|..
T Consensus 2 ~~C~~C~~C~~ 12 (17)
T PF12800_consen 2 ERCIGCGSCVD 12 (17)
T ss_dssp CCCTTSSSSTT
T ss_pred CcCCCCchHHh
Confidence 56777777754
No 14
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=21.47 E-value=60 Score=25.28 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=26.2
Q ss_pred cccceecCccccchhhHHHHhhCcc--ceeccCCCCCcccCCCCCCCCCee
Q 042877 14 SRDVRAARPKFYWERIPIMKRKGAE--TLQIAGSSLPDCSHACGSCSPCRL 62 (94)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~iGS~PP~C~~KC~~C~PC~a 62 (94)
.++....+-++.||+...+.+.... +...++ ++ ..|.+||-|.+
T Consensus 4 ~~~~~~~~~~v~~e~~~~~ve~~~~~~~e~~~~-~l----~~C~QCG~CT~ 49 (195)
T COG1150 4 PDMEVIDGEDVSPEEKEEAVERTEEVKGEGRLD-YL----EGCYQCGTCTG 49 (195)
T ss_pred hhhhhhcccccChHHHHHHHHHHHHhcCchhhh-hH----hHhhccCcccC
Confidence 3455566677899999877664421 111111 11 12999999987
Done!