Query 042877
Match_columns 94
No_of_seqs 101 out of 131
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 18:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2liy_A Epidermal patterning fa 97.2 0.00033 1.1E-08 42.5 3.7 42 43-87 1-44 (45)
2 2l3i_A Aoxki4A, antimicrobial 65.4 1.4 4.8E-05 24.3 0.2 8 78-85 4-11 (30)
3 3bl5_A Queuosine biosynthesis 36.7 5.2 0.00018 27.1 -0.8 47 16-62 151-203 (219)
4 1ag7_A Conotoxin GS; neurotoxi 32.7 16 0.00056 20.5 1.0 10 41-50 3-13 (34)
5 1tfi_A Transcriptional elongat 31.4 69 0.0024 18.5 3.7 36 52-89 10-46 (50)
6 3h0g_I DNA-directed RNA polyme 26.8 1.2E+02 0.0039 19.8 4.6 43 46-90 67-110 (113)
7 1eyo_A Conotoxin TVIIA; cystin 26.2 25 0.00087 19.3 1.1 10 41-50 3-13 (30)
8 1qyp_A RNA polymerase II; tran 22.2 1.2E+02 0.004 17.2 4.6 37 51-89 15-52 (57)
9 1twf_I B12.6, DNA-directed RNA 19.8 1.5E+02 0.0051 19.5 4.2 41 47-89 68-109 (122)
10 2gjv_A Putative cytoplasmic pr 16.7 36 0.0012 25.1 0.5 15 40-54 113-127 (175)
No 1
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=97.22 E-value=0.00033 Score=42.46 Aligned_cols=42 Identities=29% Similarity=0.731 Sum_probs=35.8
Q ss_pred cCCCCCccc-CCCCCCCC-CeeeEEeccCCCCCCCCcccceeeeecC
Q 042877 43 AGSSLPDCS-HACGSCSP-CRLVMVSFVCASLEEAETCPMAYKCMCN 87 (94)
Q Consensus 43 iGS~PP~C~-~KC~~C~P-C~aVqVp~~~~~~~~seYyPl~WKCkCg 87 (94)
|||+-|.|. |-|.+|.. |.+.|||+..+...++.| -|||.|+
T Consensus 1 igS~APtCTYNECrgCr~~C~aeqvPvd~~dP~~SAY---hY~CvCh 44 (45)
T 2liy_A 1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY---HYRCVCH 44 (45)
T ss_dssp CCSCTTTTCGGGGTTCCSEEEEEEEESSCSSSCSCCE---EEEEEEE
T ss_pred CCccCCceeehhhcCcccccceeeccccCCCcccchh---eeEeEec
Confidence 799999997 68999975 999999998877667777 4899985
No 2
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=65.37 E-value=1.4 Score=24.32 Aligned_cols=8 Identities=50% Similarity=1.505 Sum_probs=7.1
Q ss_pred ccceeeee
Q 042877 78 CPMAYKCM 85 (94)
Q Consensus 78 yPl~WKCk 85 (94)
+|-+|||+
T Consensus 4 cpkswkck 11 (30)
T 2l3i_A 4 CPKSWKCK 11 (30)
T ss_dssp SSSCSCCC
T ss_pred CCcchhHH
Confidence 78999997
No 3
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=36.65 E-value=5.2 Score=27.10 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=29.3
Q ss_pred cceecCccccchhhHHHHhhCccce-eccCCCCCccc-----CCCCCCCCCee
Q 042877 16 DVRAARPKFYWERIPIMKRKGAETL-QIAGSSLPDCS-----HACGSCSPCRL 62 (94)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~iGS~PP~C~-----~KC~~C~PC~a 62 (94)
+..+.+|=+.+.+.++..-.-.... ..+=...|+|. .-|+.|.+|..
T Consensus 151 ~~~ii~PL~~~~K~ei~~~a~~~glp~~~~~~t~sc~~~~~~~~CG~C~~C~~ 203 (219)
T 3bl5_A 151 PFVIHTPLMWLNKAETWKLADELGALDFVKNNTLTCYNGIIADGCGECPACHL 203 (219)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCHHHHHHHCCCSTTSCCSSCCSCSHHHHH
T ss_pred CeEEEeccccCCHHHHHHHHHHcCCCccchhheeeccCCCCCCCCCCCHHHHH
Confidence 5678899788888876543222222 11224567884 34999999964
No 4
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=32.67 E-value=16 Score=20.46 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=7.9
Q ss_pred eccCCC-CCcc
Q 042877 41 QIAGSS-LPDC 50 (94)
Q Consensus 41 ~~iGS~-PP~C 50 (94)
+..||+ ||.|
T Consensus 3 sgrgsrcppqc 13 (34)
T 1ag7_A 3 SGRGSRCPPQC 13 (34)
T ss_dssp BCTTSCSSSCB
T ss_pred cCCCCCCChhh
Confidence 467898 8887
No 5
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.37 E-value=69 Score=18.48 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCCCCCCCCeeeEEeccCCCCCCCCcccceeeee-cCCC
Q 042877 52 HACGSCSPCRLVMVSFVCASLEEAETCPMAYKCM-CNNK 89 (94)
Q Consensus 52 ~KC~~C~PC~aVqVp~~~~~~~~seYyPl~WKCk-Cgnk 89 (94)
.+|..|+.=+++-+-++..+ .+|--.+-++|. ||.+
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~Rs--aDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRS--ADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSS--SSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcC--CCCCceEEEEcCCCCCe
Confidence 47889999999888777665 334455667774 7764
No 6
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.82 E-value=1.2e+02 Score=19.84 Aligned_cols=43 Identities=19% Similarity=0.436 Sum_probs=31.6
Q ss_pred CCCcccCCCCCCCCCeeeEEeccCCCCCCCCcccceeeee-cCCCC
Q 042877 46 SLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCM-CNNKS 90 (94)
Q Consensus 46 ~PP~C~~KC~~C~PC~aVqVp~~~~~~~~seYyPl~WKCk-Cgnkl 90 (94)
..|+-..+|..|+.=+++-+-.+..+ ..|--.+-++|. ||.+.
T Consensus 67 tlp~~~~~Cp~C~~~~a~~~q~q~rs--ade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 67 TLPRSDKECPRCHQHEAVFYQTHSRR--GDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SSCBCCSCCSSSCCSCEEEECCCCSS--CCCCCCCEEEESSSCCCC
T ss_pred cCCCcccCCCCCCCceEEEEEEeccc--CCCCCeeEEEcCCCCCEE
Confidence 35788889999999898887666554 345566778885 88763
No 7
>1eyo_A Conotoxin TVIIA; cystine knot motif; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1
Probab=26.17 E-value=25 Score=19.26 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=7.7
Q ss_pred eccCCC-CCcc
Q 042877 41 QIAGSS-LPDC 50 (94)
Q Consensus 41 ~~iGS~-PP~C 50 (94)
+..||+ ||.|
T Consensus 3 sgr~srcpp~c 13 (30)
T 1eyo_A 3 SGRDSRCPPVC 13 (30)
T ss_dssp BCTTSSCSSSB
T ss_pred cCCCCCCCchh
Confidence 467888 8887
No 8
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.19 E-value=1.2e+02 Score=17.25 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=25.2
Q ss_pred cCCCCCCCCCeeeEEeccCCCCCCCCcccceeeee-cCCC
Q 042877 51 SHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCM-CNNK 89 (94)
Q Consensus 51 ~~KC~~C~PC~aVqVp~~~~~~~~seYyPl~WKCk-Cgnk 89 (94)
..+|..|+.=+++-.-++..+ ..|-..+-|+|. ||.+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rs--adep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRA--GDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSS--SSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeeccc--CCCCCcEEEEcCCCCCE
Confidence 568899998666666565543 335556788994 8865
No 9
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=19.83 E-value=1.5e+02 Score=19.53 Aligned_cols=41 Identities=17% Similarity=0.460 Sum_probs=30.1
Q ss_pred CCcccCCCCCCCCCeeeEEeccCCCCCCCCcccceeeee-cCCC
Q 042877 47 LPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCM-CNNK 89 (94)
Q Consensus 47 PP~C~~KC~~C~PC~aVqVp~~~~~~~~seYyPl~WKCk-Cgnk 89 (94)
.|.-..+|..|+.=+++-+-++..+ ..|--.+-++|. ||.+
T Consensus 68 ~p~t~~~Cp~C~~~~a~~~q~q~rs--ade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 68 LPRSDRECPKCHSRENVFFQSQQRR--KDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp SCCCCCCCTTTCCCCEEEEECSSCC--TTCCCCEEEEETTTCCE
T ss_pred ccccCCCCCCCCCCEEEEEEecCcc--CCCCceEEEEeCCCCCE
Confidence 5666789999999999888777665 345556677885 8764
No 10
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=16.68 E-value=36 Score=25.14 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=12.3
Q ss_pred eeccCCCCCcccCCC
Q 042877 40 LQIAGSSLPDCSHAC 54 (94)
Q Consensus 40 ~~~iGS~PP~C~~KC 54 (94)
+.+.|=+||+|..+|
T Consensus 113 laL~Gf~ppdC~r~~ 127 (175)
T 2gjv_A 113 RSLGGIELPDCDRPL 127 (175)
T ss_dssp HHHTTCCCTTCSSCC
T ss_pred HHHcCccCCCCCCcc
Confidence 568899999998665
Done!