Query 042877
Match_columns 94
No_of_seqs 101 out of 131
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 18:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042877.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042877hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qypa_ g.41.3.1 (A:) RBP9 sub 43.1 19 0.0014 20.3 4.1 42 46-89 10-52 (57)
2 d1ag7a_ g.3.6.1 (A:) Conotoxin 32.7 7.7 0.00056 20.5 1.0 10 41-50 3-13 (34)
3 d2fug11 a.29.12.1 (1:334-438) 25.5 4.3 0.00031 25.3 -1.0 9 53-61 19-27 (105)
4 d2j0141 d.325.1.2 (4:1-50) Rib 19.5 9.3 0.00068 21.3 -0.3 17 74-90 6-22 (50)
5 d1twfi2 g.41.3.1 (I:50-121) RB 18.1 89 0.0065 18.0 4.4 41 47-89 19-60 (72)
6 d2dmda2 g.37.1.1 (A:8-33) Zinc 16.9 23 0.0017 17.6 0.9 10 52-61 2-11 (26)
7 d1ywsa1 g.41.17.1 (A:1-82) Dip 16.9 15 0.0011 22.5 0.2 12 80-92 21-32 (82)
8 d2gjva1 d.323.1.2 (A:1-134) Pu 16.8 17 0.0012 24.2 0.5 15 40-54 89-103 (134)
9 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 15.5 17 0.0013 22.3 0.3 10 81-90 40-49 (85)
10 d1wfla_ g.80.1.1 (A:) Zinc fin 15.0 18 0.0013 21.7 0.2 10 81-90 39-48 (74)
No 1
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=43.10 E-value=19 Score=20.30 Aligned_cols=42 Identities=21% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCCcccCCCCCCCCCeeeEEeccCCCCCCCCcccceeee-ecCCC
Q 042877 46 SLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKC-MCNNK 89 (94)
Q Consensus 46 ~PP~C~~KC~~C~PC~aVqVp~~~~~~~~seYyPl~WKC-kCgnk 89 (94)
..|.-.-+|..|+.=+++-+-.+.++ ..|--.+-+.| .||.+
T Consensus 10 ~~pt~~~~CpkC~~~~a~~~~~QtRs--aDE~~T~fy~C~~Cg~~ 52 (57)
T d1qypa_ 10 TLPTTKITCPKCGNDTAYWWEMQTRA--GDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp SSCEEECCCTTTCCSEEEEEEECCSS--SSCSSEEEEEESSSCCE
T ss_pred cCCcccCCCCCCCCCceEEEEeeccc--ccCCCeEEEEeCCCCCc
Confidence 35667789999999999998887765 34555666777 57765
No 2
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS}
Probab=32.67 E-value=7.7 Score=20.46 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=7.9
Q ss_pred eccCCC-CCcc
Q 042877 41 QIAGSS-LPDC 50 (94)
Q Consensus 41 ~~iGS~-PP~C 50 (94)
+..||+ ||.|
T Consensus 3 sgrgsrcppqc 13 (34)
T d1ag7a_ 3 SGRGSRCPPQC 13 (34)
T ss_dssp BCTTSCSSSCB
T ss_pred cCCCCCCChhh
Confidence 467898 8887
No 3
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=25.52 E-value=4.3 Score=25.31 Aligned_cols=9 Identities=67% Similarity=2.073 Sum_probs=7.6
Q ss_pred CCCCCCCCe
Q 042877 53 ACGSCSPCR 61 (94)
Q Consensus 53 KC~~C~PC~ 61 (94)
-||.|.||.
T Consensus 19 SCGkC~PCR 27 (105)
T d2fug11 19 SCGKCTPCR 27 (105)
T ss_dssp CCSCCHHHH
T ss_pred cCCCCCcch
Confidence 599999994
No 4
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=19.48 E-value=9.3 Score=21.33 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=13.8
Q ss_pred CCCcccceeeeecCCCC
Q 042877 74 EAETCPMAYKCMCNNKS 90 (94)
Q Consensus 74 ~seYyPl~WKCkCgnkl 90 (94)
.-+|++..-+|.||+.+
T Consensus 6 HP~y~~v~~~cscg~~f 22 (50)
T d2j0141 6 HPKLVPARIICGCGNVI 22 (50)
T ss_dssp CCCCTTTTTCTTSCGGG
T ss_pred CCCCEEEEEEECCCCEE
Confidence 34789999999999863
No 5
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.12 E-value=89 Score=18.01 Aligned_cols=41 Identities=17% Similarity=0.426 Sum_probs=29.1
Q ss_pred CCcccCCCCCCCCCeeeEEeccCCCCCCCCcccceeee-ecCCC
Q 042877 47 LPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKC-MCNNK 89 (94)
Q Consensus 47 PP~C~~KC~~C~PC~aVqVp~~~~~~~~seYyPl~WKC-kCgnk 89 (94)
.|+=...|..|+.=+++-+-.+..+ ..|--.+-+.| .||.+
T Consensus 19 lp~t~~~CpkCg~~~a~~~q~QtRs--aDE~mT~Fy~C~~C~h~ 60 (72)
T d1twfi2 19 LPRSDRECPKCHSRENVFFQSQQRR--KDTSMVLFFVCLSCSHI 60 (72)
T ss_dssp SCCCCCCCTTTCCCCEEEEECSSCC--TTCCCCEEEEETTTCCE
T ss_pred CCccCCCCCCCCCCeEEEEEeecCc--cCCCceEEEEcCCCCCC
Confidence 4666889999999888888777665 34555566777 47653
No 6
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.88 E-value=23 Score=17.60 Aligned_cols=10 Identities=40% Similarity=1.162 Sum_probs=8.3
Q ss_pred CCCCCCCCCe
Q 042877 52 HACGSCSPCR 61 (94)
Q Consensus 52 ~KC~~C~PC~ 61 (94)
+||..|+-|+
T Consensus 2 hkc~~c~kcf 11 (26)
T d2dmda2 2 HKCEVCGKCF 11 (26)
T ss_dssp CCBTTTTBCC
T ss_pred CccchhhhHh
Confidence 6888898886
No 7
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.85 E-value=15 Score=22.49 Aligned_cols=12 Identities=25% Similarity=1.115 Sum_probs=8.5
Q ss_pred ceeeeecCCCCcc
Q 042877 80 MAYKCMCNNKSYP 92 (94)
Q Consensus 80 l~WKCkCgnklf~ 92 (94)
..+-|.|||+ |.
T Consensus 21 ~~ypCrCGd~-F~ 32 (82)
T d1ywsa1 21 FTYPCPCGDR-FQ 32 (82)
T ss_dssp EEECCSSSSC-EE
T ss_pred EEeccccCCe-EE
Confidence 3456999997 54
No 8
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]}
Probab=16.77 E-value=17 Score=24.19 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=12.4
Q ss_pred eeccCCCCCcccCCC
Q 042877 40 LQIAGSSLPDCSHAC 54 (94)
Q Consensus 40 ~~~iGS~PP~C~~KC 54 (94)
+.+.|-+||+|..||
T Consensus 89 ~aL~Gf~ppdC~~~l 103 (134)
T d2gjva1 89 RSLGGIELPDCDRPL 103 (134)
T ss_dssp HHHTTCCCTTCSSCC
T ss_pred HHHcCccCCCCCccc
Confidence 567899999998776
No 9
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.53 E-value=17 Score=22.31 Aligned_cols=10 Identities=30% Similarity=1.029 Sum_probs=7.6
Q ss_pred eeeeecCCCC
Q 042877 81 AYKCMCNNKS 90 (94)
Q Consensus 81 ~WKCkCgnkl 90 (94)
.++|+||+.|
T Consensus 40 ~~~CrCg~~F 49 (85)
T d1wffa_ 40 SFECRCGNNF 49 (85)
T ss_dssp CEECTTCCEE
T ss_pred CeecCCCCEe
Confidence 4699999754
No 10
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.95 E-value=18 Score=21.74 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=7.8
Q ss_pred eeeeecCCCC
Q 042877 81 AYKCMCNNKS 90 (94)
Q Consensus 81 ~WKCkCgnkl 90 (94)
..+|+||+.|
T Consensus 39 ~~~CrCg~~F 48 (74)
T d1wfla_ 39 GFDCRCGNLF 48 (74)
T ss_dssp CEECTTSCEE
T ss_pred eeEccCCCEe
Confidence 4589999865
Done!