BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042879
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN-ATLFSKAIPRANELGIEI 64
RK H++ P GH+ PL +AKL RG T + T N L P+A +
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFD----- 61
Query: 65 DIKTIKFPSVEVGLP--EGSENLNEMTSQPDMPVNLQEHKPN------------------ 104
F S+ GL EG ++++ D+P Q + N
Sbjct: 62 GFTDFNFESIPDGLTPMEGDGDVSQ-----DVPTLCQSVRKNFLKPYCELLTRLNHSTNV 116
Query: 105 ----CLVADMLFPWATDAAAKFGIPRLVFHGTSFLSL 137
CLV+D + AA +F +P +++ +S SL
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSL 153
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEID 65
R+ HI+F + HGH+ P + + RG + T +TTP LF+ + A G E+
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTP----LFADEVKAA---GAEVV 55
Query: 66 IKTIKFPSVEV 76
+ +F + V
Sbjct: 56 LYKSEFDTFHV 66
>pdb|3DSH|A Chain A, Crystal Structure Of Dimeric Interferon Regulatory
Factor 5 (irf-5) Transactivation Domain
Length = 246
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 15 LMAHGHMIPLVDMAKLFGSRGV--KTTVITTPANATLFS---KAIPRANELGIEIDIKTI 69
L+ HM+PL D+ F RG + I+ P LF +A EL I ++ +
Sbjct: 7 LLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQV 66
Query: 70 KFPSVE 75
+FPS E
Sbjct: 67 RFPSPE 72
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPR 56
HI F + AHGH+ P +++ + +RG + T P A + PR
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPR 56
>pdb|1TUU|A Chain A, Acetate Kinase Crystallized With Atpgs
pdb|1TUU|B Chain B, Acetate Kinase Crystallized With Atpgs
pdb|1TUY|A Chain A, Acetate Kinase Complexed With Adp, Alf3 And Acetate
pdb|1TUY|B Chain B, Acetate Kinase Complexed With Adp, Alf3 And Acetate
Length = 399
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 111 LFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHKKVSSVS 156
++ D K G+ + FHGTS + A LML +P ++ ++
Sbjct: 161 MYALPYDLYEKHGVRKYGFHGTSHKYVAERAALMLGKPAEETKIIT 206
>pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
pdb|1G99|B Chain B, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
Length = 408
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 111 LFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHKKVSSVS 156
++ D K G+ + FHGTS + A LML +P ++ ++
Sbjct: 161 MYALPYDLYEKHGVRKYGFHGTSHKYVAERAALMLGKPAEETKIIT 206
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 4 EIRKLHIIFFPLMAHGHMIPLVDMAK-LFGSRGVKTTVITTPANATLFSKAIPRANELGI 62
E + H+ P GH+IPLV+ AK L G+ T + A SKA R +
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVI--AGEGPPSKA-QRTVLDSL 59
Query: 63 EIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHK-----------PNCLVADML 111
I ++ P V++ S + S N + K P LV D+
Sbjct: 60 PSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLF 119
Query: 112 FPWATDAAAKFGIPRLVFHGTS 133
A D A +F +P +F+ T+
Sbjct: 120 GTDAFDVAVEFHVPPYIFYPTT 141
>pdb|1USY|E Chain E, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|F Chain F, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|G Chain G, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 122 FGIPRLVFHGTSFLSLCATACLMLYEPHKKVSSVSEPFVIPN 163
F +P + HG + + C T L+ +K +S+ +PF IP
Sbjct: 47 FDVPTYLVHGVADIGFCGTDVLL-----EKETSLIQPFFIPT 83
>pdb|1USY|H Chain H, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 122 FGIPRLVFHGTSFLSLCATACLMLYEPHKKVSSVSEPFVIPN 163
F +P + HG + + C T L+ +K +S+ +PF IP
Sbjct: 47 FDVPTYLVHGVADIGFCGTDVLL-----EKETSLIQPFFIPT 83
>pdb|1O64|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O64|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 122 FGIPRLVFHGTSFLSLCATACLMLYEPHKKVSSVSEPFVIPN 163
F +P + HG + + C T L+ +K +S+ +PF IP
Sbjct: 48 FDVPTYLVHGVADIGFCGTDVLL-----EKETSLIQPFFIPT 84
>pdb|1O63|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O63|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 122 FGIPRLVFHGTSFLSLCATACLMLYEPHKKVSSVSEPFVIP 162
F +P + HG + + C T L+ +K +S+ +PF IP
Sbjct: 48 FDVPTYLVHGVADIGFCGTDVLL-----EKETSLIQPFFIP 83
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDI 66
+ ++F + + H+ LV +A F + G + V+ +PA + A A +G ++D+
Sbjct: 21 MRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAGLTAVPVGTDVDL 79
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKT 68
HI FF + HGH+ P + + + +RG + + T F+ + A + D
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDE----FAAQVKAAGATPVVYDSIL 69
Query: 69 IKFPSVEVGLPEGSEN-----LNEMTSQ-PDMPVNLQEHKPNCLVADM 110
K + E PE E+ L+E P + + +P+ +V D+
Sbjct: 70 PKESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDI 117
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 104 NCLVADMLFPWATDAAAKFGIPRLVF 129
+CLVAD +A D AA+ G+ L F
Sbjct: 114 SCLVADAFIWFAADMAAEMGVAWLPF 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,579,600
Number of Sequences: 62578
Number of extensions: 208036
Number of successful extensions: 505
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 16
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)