Query 042879
Match_columns 189
No_of_seqs 186 out of 1467
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 5.7E-32 1.2E-36 232.1 17.8 176 5-180 6-197 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.9E-31 4.2E-36 228.7 17.4 173 1-181 1-194 (477)
3 PLN02555 limonoid glucosyltran 100.0 3.8E-30 8.1E-35 220.5 16.0 172 1-180 1-192 (480)
4 PLN02670 transferase, transfer 100.0 2.4E-29 5.2E-34 215.1 15.8 172 5-180 4-192 (472)
5 PLN02173 UDP-glucosyl transfer 100.0 3.4E-29 7.3E-34 213.1 14.9 157 5-182 3-174 (449)
6 PLN00164 glucosyltransferase; 100.0 4.9E-29 1.1E-33 214.3 14.1 170 6-182 2-189 (480)
7 PLN03007 UDP-glucosyltransfera 100.0 2.7E-28 5.8E-33 210.1 17.4 172 6-177 4-197 (482)
8 PLN02992 coniferyl-alcohol glu 100.0 6E-29 1.3E-33 212.9 13.2 169 6-182 4-183 (481)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.7E-29 1.7E-33 211.4 13.6 165 1-180 1-185 (451)
10 PLN02562 UDP-glycosyltransfera 100.0 5.4E-28 1.2E-32 206.3 15.7 165 5-181 4-185 (448)
11 PLN02152 indole-3-acetate beta 100.0 7E-28 1.5E-32 205.4 15.1 156 7-181 3-174 (455)
12 PLN03004 UDP-glycosyltransfera 100.0 6.1E-28 1.3E-32 205.5 14.4 173 7-182 3-191 (451)
13 PLN02210 UDP-glucosyl transfer 100.0 6E-28 1.3E-32 206.4 14.2 170 1-182 1-181 (456)
14 PLN03015 UDP-glucosyl transfer 100.0 7.6E-28 1.6E-32 205.3 14.3 171 7-182 3-187 (470)
15 PLN02207 UDP-glycosyltransfera 99.9 5.9E-27 1.3E-31 200.2 14.6 170 6-181 2-195 (468)
16 PLN02554 UDP-glycosyltransfera 99.9 2.5E-27 5.4E-32 204.0 11.6 169 7-181 2-194 (481)
17 PLN02208 glycosyltransferase f 99.9 9.6E-27 2.1E-31 198.1 13.8 158 5-178 2-173 (442)
18 PLN02167 UDP-glycosyltransfera 99.9 2.4E-26 5.3E-31 197.6 15.0 170 6-181 2-199 (475)
19 PLN02764 glycosyltransferase f 99.9 9.8E-26 2.1E-30 191.8 15.8 157 6-178 4-174 (453)
20 PLN02448 UDP-glycosyltransfera 99.9 1.2E-25 2.5E-30 192.8 15.1 165 4-181 7-190 (459)
21 PLN00414 glycosyltransferase f 99.9 6.7E-26 1.4E-30 193.1 13.5 131 6-142 3-146 (446)
22 cd03784 GT1_Gtf_like This fami 99.5 1.6E-14 3.6E-19 121.5 7.3 118 8-134 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.5 1.7E-13 3.6E-18 115.4 7.7 112 13-133 1-123 (392)
24 KOG1192 UDP-glucuronosyl and U 99.1 1.9E-11 4.2E-16 105.6 2.2 137 7-145 5-158 (496)
25 PF03033 Glyco_transf_28: Glyc 99.1 1.8E-11 4E-16 88.3 0.4 112 10-133 1-131 (139)
26 PF00201 UDPGT: UDP-glucoronos 98.8 1.8E-10 4E-15 99.8 -5.6 35 9-44 2-36 (500)
27 PHA03392 egt ecdysteroid UDP-g 98.6 7.8E-08 1.7E-12 83.9 7.3 121 7-134 20-169 (507)
28 COG1819 Glycosyl transferases, 98.3 1.1E-06 2.3E-11 74.8 4.7 47 7-53 1-47 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.2 5.4E-06 1.2E-10 67.6 8.5 113 9-135 2-126 (318)
30 TIGR00661 MJ1255 conserved hyp 98.2 1.4E-05 3E-10 65.7 9.4 110 13-133 6-123 (321)
31 PRK12446 undecaprenyldiphospho 97.4 0.0013 2.9E-08 54.9 9.8 118 9-138 3-129 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.0 0.0052 1.1E-07 51.5 8.7 116 9-136 2-127 (357)
33 TIGR03590 PseG pseudaminic aci 96.9 0.0072 1.6E-07 48.9 8.9 97 15-129 11-109 (279)
34 cd03785 GT1_MurG MurG is an N- 96.9 0.0055 1.2E-07 50.3 7.9 109 9-129 1-118 (350)
35 PRK00726 murG undecaprenyldiph 96.9 0.0049 1.1E-07 51.0 7.6 110 8-129 2-120 (357)
36 TIGR01133 murG undecaprenyldip 96.7 0.011 2.3E-07 48.6 8.2 110 9-129 2-119 (348)
37 TIGR00215 lpxB lipid-A-disacch 96.4 0.0019 4E-08 54.6 2.4 107 8-129 6-119 (385)
38 cd03814 GT1_like_2 This family 96.3 0.041 9E-07 44.5 9.7 99 18-131 14-115 (364)
39 PF13579 Glyco_trans_4_4: Glyc 96.2 0.0079 1.7E-07 43.0 4.3 96 23-132 6-105 (160)
40 PLN02871 UDP-sulfoquinovose:DA 95.9 0.11 2.3E-06 44.9 10.6 112 5-130 56-175 (465)
41 COG3980 spsG Spore coat polysa 95.2 0.12 2.7E-06 41.7 7.7 94 15-138 12-108 (318)
42 cd04962 GT1_like_5 This family 95.2 0.11 2.3E-06 42.7 7.8 37 9-45 2-39 (371)
43 PRK00025 lpxB lipid-A-disaccha 95.1 0.013 2.8E-07 48.9 2.2 109 8-131 2-117 (380)
44 COG4671 Predicted glycosyl tra 94.7 0.092 2E-06 43.7 5.9 58 6-71 8-69 (400)
45 cd03818 GT1_ExpC_like This fam 94.6 0.3 6.5E-06 41.0 9.1 95 23-130 12-116 (396)
46 PF13477 Glyco_trans_4_2: Glyc 94.6 0.34 7.4E-06 34.2 8.2 102 10-131 2-107 (139)
47 cd03808 GT1_cap1E_like This fa 94.4 0.2 4.3E-06 40.0 7.4 108 9-130 1-110 (359)
48 cd03796 GT1_PIG-A_like This fa 94.4 0.35 7.5E-06 40.7 9.0 101 19-129 15-119 (398)
49 cd03800 GT1_Sucrose_synthase T 94.2 0.23 5E-06 41.1 7.5 107 18-131 21-132 (398)
50 cd03823 GT1_ExpE7_like This fa 93.3 0.37 7.9E-06 38.8 7.0 107 18-131 15-128 (359)
51 cd03819 GT1_WavL_like This fam 92.8 0.69 1.5E-05 37.5 8.0 99 19-133 11-111 (355)
52 PF04007 DUF354: Protein of un 91.2 0.51 1.1E-05 39.3 5.4 110 19-144 11-124 (335)
53 PRK05749 3-deoxy-D-manno-octul 90.8 2.5 5.5E-05 35.8 9.5 99 9-130 51-154 (425)
54 PLN02846 digalactosyldiacylgly 90.7 3.8 8.3E-05 35.7 10.5 39 6-44 3-46 (462)
55 cd03820 GT1_amsD_like This fam 90.5 3.2 6.9E-05 32.8 9.4 100 18-131 13-113 (348)
56 PLN00142 sucrose synthase 88.3 1.2 2.7E-05 41.3 5.9 30 102-131 408-439 (815)
57 cd03816 GT1_ALG1_like This fam 88.3 0.87 1.9E-05 38.8 4.8 39 7-45 3-41 (415)
58 COG1519 KdtA 3-deoxy-D-manno-o 87.4 8.2 0.00018 33.1 9.9 100 9-131 50-154 (419)
59 PRK02261 methylaspartate mutas 87.3 2.5 5.3E-05 30.5 6.0 47 6-52 2-48 (137)
60 TIGR02472 sucr_P_syn_N sucrose 87.1 3.7 8.1E-05 35.1 8.0 106 20-131 28-145 (439)
61 cd02067 B12-binding B12 bindin 86.6 2 4.4E-05 29.7 5.1 44 9-52 1-44 (119)
62 PF13439 Glyco_transf_4: Glyco 85.0 1.2 2.5E-05 32.0 3.4 27 19-45 13-39 (177)
63 TIGR02853 spore_dpaA dipicolin 84.7 15 0.00032 29.9 10.0 101 25-127 14-117 (287)
64 cd03817 GT1_UGDG_like This fam 84.3 1.9 4.2E-05 34.6 4.7 33 14-46 10-42 (374)
65 PF02571 CbiJ: Precorrin-6x re 84.1 4.4 9.5E-05 32.3 6.5 95 9-133 2-103 (249)
66 PRK13609 diacylglycerol glucos 83.8 1.8 3.9E-05 36.1 4.5 37 7-43 4-41 (380)
67 TIGR02470 sucr_synth sucrose s 83.3 6.9 0.00015 36.4 8.2 111 18-129 279-414 (784)
68 cd03807 GT1_WbnK_like This fam 83.1 10 0.00023 30.1 8.6 97 16-128 10-109 (365)
69 TIGR00715 precor6x_red precorr 83.0 7.1 0.00015 31.3 7.3 81 24-130 12-99 (256)
70 smart00851 MGS MGS-like domain 82.7 11 0.00024 24.7 7.3 79 24-127 2-89 (90)
71 cd03812 GT1_CapH_like This fam 82.5 5.2 0.00011 32.4 6.6 99 16-130 10-110 (358)
72 cd01121 Sms Sms (bacterial rad 81.4 19 0.00041 30.5 9.6 103 9-130 84-207 (372)
73 cd03794 GT1_wbuB_like This fam 81.0 2.3 5E-05 34.2 4.0 29 18-46 14-42 (394)
74 cd01424 MGS_CPS_II Methylglyox 81.0 15 0.00032 25.0 8.5 84 19-128 10-100 (110)
75 COG1066 Sms Predicted ATP-depe 80.8 2.6 5.7E-05 36.1 4.2 42 9-51 95-136 (456)
76 COG1435 Tdk Thymidine kinase [ 80.3 17 0.00037 28.0 8.1 117 9-146 5-143 (201)
77 cd00532 MGS-like MGS-like doma 79.9 17 0.00036 25.0 8.4 85 20-129 10-105 (112)
78 COG2099 CobK Precorrin-6x redu 79.5 10 0.00022 30.3 6.9 81 24-131 14-101 (257)
79 PRK12342 hypothetical protein; 79.2 11 0.00024 30.2 7.1 99 21-132 33-145 (254)
80 PF04413 Glycos_transf_N: 3-De 78.9 9.1 0.0002 29.0 6.4 101 9-132 22-127 (186)
81 PRK08057 cobalt-precorrin-6x r 77.7 12 0.00027 29.7 7.0 91 8-131 3-100 (248)
82 cd04951 GT1_WbdM_like This fam 77.5 3.2 6.9E-05 33.6 3.8 27 18-44 12-38 (360)
83 COG1484 DnaC DNA replication p 76.8 4.9 0.00011 32.1 4.6 47 7-53 105-151 (254)
84 cd02070 corrinoid_protein_B12- 76.6 9 0.00019 29.3 5.8 47 7-53 82-128 (201)
85 PRK03359 putative electron tra 76.5 12 0.00027 29.9 6.7 100 20-132 33-148 (256)
86 TIGR02370 pyl_corrinoid methyl 76.2 9.4 0.0002 29.2 5.8 48 6-53 83-130 (197)
87 PRK10307 putative glycosyl tra 76.0 5.4 0.00012 33.6 4.9 22 24-45 21-42 (412)
88 cd03821 GT1_Bme6_like This fam 75.2 5.4 0.00012 31.9 4.5 30 17-46 13-42 (375)
89 TIGR02655 circ_KaiC circadian 73.6 23 0.00049 31.0 8.2 115 8-133 264-399 (484)
90 cd03802 GT1_AviGT4_like This f 72.4 9 0.0002 30.6 5.2 27 19-45 20-46 (335)
91 cd03805 GT1_ALG2_like This fam 72.4 7.4 0.00016 32.2 4.8 37 9-45 2-40 (392)
92 PRK11823 DNA repair protein Ra 72.3 43 0.00092 29.1 9.5 43 9-51 82-124 (446)
93 cd03825 GT1_wcfI_like This fam 72.0 7 0.00015 31.6 4.5 38 9-46 2-41 (365)
94 cd03811 GT1_WabH_like This fam 71.4 7.8 0.00017 30.5 4.6 99 17-133 11-114 (353)
95 TIGR02468 sucrsPsyn_pln sucros 70.9 26 0.00056 33.9 8.3 27 19-45 196-224 (1050)
96 cd01980 Chlide_reductase_Y Chl 70.9 23 0.00049 30.4 7.5 93 9-130 282-375 (416)
97 cd03795 GT1_like_4 This family 70.8 8.4 0.00018 31.0 4.7 30 17-46 13-42 (357)
98 COG0496 SurE Predicted acid ph 70.2 15 0.00034 29.3 5.8 97 24-132 16-126 (252)
99 PF01008 IF-2B: Initiation fac 69.8 14 0.0003 29.7 5.7 32 102-133 183-220 (282)
100 cd01635 Glycosyltransferase_GT 69.8 8.4 0.00018 28.5 4.2 26 17-42 12-37 (229)
101 cd01423 MGS_CPS_I_III Methylgl 69.7 30 0.00064 23.7 6.6 84 22-127 13-105 (116)
102 PF04244 DPRP: Deoxyribodipyri 69.6 5.5 0.00012 31.2 3.2 27 19-45 46-72 (224)
103 PRK08335 translation initiatio 69.5 28 0.0006 28.3 7.2 34 102-135 184-223 (275)
104 cd02069 methionine_synthase_B1 69.3 17 0.00037 28.2 5.8 48 6-53 87-134 (213)
105 PF02571 CbiJ: Precorrin-6x re 69.2 50 0.0011 26.3 8.6 104 22-130 116-226 (249)
106 PRK08535 translation initiatio 68.7 26 0.00057 28.8 7.1 34 102-135 195-234 (310)
107 cd02071 MM_CoA_mut_B12_BD meth 68.4 17 0.00038 25.3 5.3 43 9-51 1-43 (122)
108 cd04955 GT1_like_6 This family 68.1 9.5 0.00021 30.8 4.5 29 18-46 15-43 (363)
109 PF02310 B12-binding: B12 bind 68.0 24 0.00053 24.0 6.0 43 9-51 2-44 (121)
110 TIGR00416 sms DNA repair prote 66.9 42 0.00092 29.2 8.3 42 9-50 96-137 (454)
111 COG2099 CobK Precorrin-6x redu 66.3 47 0.001 26.6 7.7 39 92-130 186-229 (257)
112 PF02441 Flavoprotein: Flavopr 66.2 10 0.00022 26.7 3.7 42 9-51 2-43 (129)
113 PRK06372 translation initiatio 66.1 35 0.00075 27.4 7.1 17 115-131 177-193 (253)
114 PF07894 DUF1669: Protein of u 66.0 11 0.00024 30.6 4.3 43 91-133 132-184 (284)
115 PRK13932 stationary phase surv 66.0 51 0.0011 26.5 8.0 114 5-132 3-134 (257)
116 PF12000 Glyco_trans_4_3: Gkyc 65.2 31 0.00067 25.9 6.3 29 102-130 66-95 (171)
117 PRK00654 glgA glycogen synthas 64.8 12 0.00026 32.4 4.6 26 19-44 18-43 (466)
118 KOG2941 Beta-1,4-mannosyltrans 64.7 41 0.00089 28.5 7.3 63 5-73 10-72 (444)
119 cd03801 GT1_YqgM_like This fam 64.6 14 0.00031 29.1 4.8 103 18-133 14-118 (374)
120 cd01974 Nitrogenase_MoFe_beta 64.4 61 0.0013 27.9 8.9 34 93-129 368-401 (435)
121 TIGR03449 mycothiol_MshA UDP-N 64.4 8.3 0.00018 32.2 3.5 105 17-132 19-133 (405)
122 TIGR03088 stp2 sugar transfera 64.1 58 0.0013 26.7 8.5 100 12-128 7-108 (374)
123 TIGR00511 ribulose_e2b2 ribose 63.0 39 0.00085 27.7 7.1 35 102-136 190-230 (301)
124 TIGR00087 surE 5'/3'-nucleotid 62.0 75 0.0016 25.2 8.3 96 24-131 16-128 (244)
125 PF12146 Hydrolase_4: Putative 61.8 19 0.00042 23.1 4.1 35 8-42 16-50 (79)
126 cd03466 Nitrogenase_NifN_2 Nit 61.4 70 0.0015 27.5 8.7 35 92-129 362-396 (429)
127 COG0162 TyrS Tyrosyl-tRNA synt 61.1 9.7 0.00021 32.6 3.3 35 9-44 36-73 (401)
128 cd01968 Nitrogenase_NifE_I Nit 60.4 53 0.0011 28.0 7.7 32 94-128 348-379 (410)
129 PRK13935 stationary phase surv 58.5 86 0.0019 25.1 8.1 24 24-48 16-39 (253)
130 TIGR01285 nifN nitrogenase mol 57.9 67 0.0015 27.7 8.0 32 93-127 364-395 (432)
131 PF04127 DFP: DNA / pantothena 57.5 13 0.00028 28.3 3.1 30 14-45 24-53 (185)
132 PLN02275 transferase, transfer 57.2 1.1E+02 0.0024 25.3 11.7 58 6-71 5-63 (371)
133 COG1703 ArgK Putative periplas 56.3 28 0.0006 28.8 5.0 41 7-47 51-91 (323)
134 cd01018 ZntC Metal binding pro 55.5 45 0.00097 26.6 6.1 42 96-137 211-254 (266)
135 cd03791 GT1_Glycogen_synthase_ 55.4 13 0.00027 32.0 3.1 24 22-45 20-43 (476)
136 COG0299 PurN Folate-dependent 55.1 20 0.00043 27.6 3.7 33 102-134 29-61 (200)
137 COG2185 Sbm Methylmalonyl-CoA 54.8 40 0.00087 24.5 5.1 41 6-46 11-51 (143)
138 PRK06371 translation initiatio 54.5 59 0.0013 27.2 6.7 32 102-133 222-259 (329)
139 PF08323 Glyco_transf_5: Starc 52.9 12 0.00026 29.5 2.5 25 21-45 19-43 (245)
140 PF09314 DUF1972: Domain of un 52.8 22 0.00048 27.0 3.7 46 19-71 17-63 (185)
141 COG0467 RAD55 RecA-superfamily 52.3 45 0.00097 26.3 5.6 47 7-53 23-69 (260)
142 TIGR00524 eIF-2B_rel eIF-2B al 51.1 54 0.0012 26.9 6.0 34 102-135 204-243 (303)
143 cd01981 Pchlide_reductase_B Pc 50.8 27 0.00058 30.0 4.4 34 94-130 362-395 (430)
144 TIGR01990 bPGM beta-phosphoglu 50.2 80 0.0017 23.0 6.5 89 24-129 92-184 (185)
145 PRK08334 translation initiatio 50.2 84 0.0018 26.6 7.0 19 116-134 265-283 (356)
146 TIGR00512 salvage_mtnA S-methy 50.0 68 0.0015 26.8 6.4 34 102-135 232-271 (331)
147 PF00070 Pyr_redox: Pyridine n 49.6 29 0.00063 21.9 3.5 23 23-45 10-32 (80)
148 COG1817 Uncharacterized protei 49.3 56 0.0012 27.2 5.7 99 20-135 12-116 (346)
149 cd03798 GT1_wlbH_like This fam 49.2 32 0.0007 27.2 4.5 31 17-47 13-43 (377)
150 PF13450 NAD_binding_8: NAD(P) 49.1 24 0.00053 21.8 2.9 21 25-45 9-29 (68)
151 TIGR01283 nifE nitrogenase mol 48.6 61 0.0013 28.1 6.3 35 93-130 386-420 (456)
152 PF00448 SRP54: SRP54-type pro 48.4 42 0.0009 25.6 4.7 39 9-47 3-41 (196)
153 PRK12475 thiamine/molybdopteri 48.2 87 0.0019 26.1 6.9 33 7-44 24-57 (338)
154 TIGR00064 ftsY signal recognit 48.1 53 0.0011 26.4 5.5 39 8-46 73-111 (272)
155 TIGR00236 wecB UDP-N-acetylglu 47.8 34 0.00073 28.3 4.5 109 9-129 2-116 (365)
156 PRK01021 lpxB lipid-A-disaccha 47.6 40 0.00087 30.6 5.0 35 100-134 308-347 (608)
157 TIGR02095 glgA glycogen/starch 47.3 20 0.00044 30.9 3.2 27 19-45 18-44 (473)
158 PF02603 Hpr_kinase_N: HPr Ser 47.3 33 0.00072 24.2 3.8 42 92-133 72-115 (127)
159 PRK08305 spoVFB dipicolinate s 47.3 26 0.00056 26.9 3.4 38 9-47 7-45 (196)
160 cd02034 CooC The accessory pro 47.1 57 0.0012 22.5 4.9 37 9-45 1-37 (116)
161 cd03115 SRP The signal recogni 46.9 71 0.0015 23.2 5.7 39 10-48 3-41 (173)
162 PF08026 Antimicrobial_5: Bee 46.7 2.6 5.7E-05 22.7 -1.5 23 13-35 16-38 (39)
163 PF03808 Glyco_tran_WecB: Glyc 46.0 1.2E+02 0.0026 22.4 8.0 95 24-134 37-136 (172)
164 PF06925 MGDG_synth: Monogalac 46.0 42 0.00091 24.6 4.3 42 92-133 79-126 (169)
165 CHL00076 chlB photochlorophyll 45.7 37 0.00079 30.1 4.5 34 94-130 366-399 (513)
166 TIGR00234 tyrS tyrosyl-tRNA sy 45.7 22 0.00047 30.2 3.0 25 19-44 47-71 (377)
167 cd03799 GT1_amsK_like This is 45.4 50 0.0011 26.4 5.1 25 21-45 14-38 (355)
168 cd02065 B12-binding_like B12 b 44.9 73 0.0016 21.6 5.2 41 10-50 2-42 (125)
169 PRK05720 mtnA methylthioribose 44.6 94 0.002 26.1 6.5 20 116-135 252-271 (344)
170 PRK05973 replicative DNA helic 44.4 65 0.0014 25.5 5.3 44 9-52 66-109 (237)
171 PF02951 GSH-S_N: Prokaryotic 44.2 55 0.0012 23.0 4.4 25 22-46 18-42 (119)
172 PRK13931 stationary phase surv 43.7 1.2E+02 0.0026 24.4 6.8 97 24-131 16-129 (261)
173 cd03806 GT1_ALG11_like This fa 43.4 1.5E+02 0.0034 25.1 7.9 25 23-47 19-45 (419)
174 COG4081 Uncharacterized protei 43.3 51 0.0011 23.7 4.0 37 9-45 5-42 (148)
175 cd01141 TroA_d Periplasmic bin 42.9 47 0.001 24.5 4.2 37 93-130 61-99 (186)
176 PF07015 VirC1: VirC1 protein; 42.9 86 0.0019 24.8 5.7 41 9-49 3-44 (231)
177 TIGR01278 DPOR_BchB light-inde 42.4 43 0.00093 29.6 4.4 33 94-129 356-388 (511)
178 PRK05772 translation initiatio 41.8 1.2E+02 0.0025 25.8 6.7 20 116-135 273-292 (363)
179 cd01124 KaiC KaiC is a circadi 41.7 99 0.0021 22.5 5.8 42 10-51 2-43 (187)
180 cd03822 GT1_ecORF704_like This 41.4 48 0.001 26.5 4.4 28 18-45 13-40 (366)
181 PF03720 UDPG_MGDP_dh_C: UDP-g 41.3 38 0.00082 22.9 3.2 30 22-51 17-46 (106)
182 PTZ00445 p36-lilke protein; Pr 41.3 30 0.00064 27.1 2.9 28 19-46 74-102 (219)
183 PRK13933 stationary phase surv 41.1 1.9E+02 0.004 23.2 8.3 24 24-48 16-39 (253)
184 cd01966 Nitrogenase_NifN_1 Nit 40.9 2.3E+02 0.0051 24.3 10.1 124 7-137 116-261 (417)
185 PF01497 Peripla_BP_2: Peripla 40.7 43 0.00093 25.5 3.8 38 96-133 54-93 (238)
186 TIGR02195 heptsyl_trn_II lipop 40.7 2E+02 0.0043 23.4 8.2 101 9-127 1-104 (334)
187 PRK08939 primosomal protein Dn 40.0 57 0.0012 26.8 4.6 44 8-51 157-200 (306)
188 PRK09620 hypothetical protein; 39.6 33 0.00072 26.9 3.0 20 25-44 33-52 (229)
189 PRK00771 signal recognition pa 39.5 84 0.0018 27.3 5.7 42 7-48 95-136 (437)
190 COG2086 FixA Electron transfer 39.5 1.2E+02 0.0027 24.4 6.2 38 93-130 102-145 (260)
191 cd01983 Fer4_NifH The Fer4_Nif 39.1 95 0.0021 19.3 4.8 33 10-42 2-34 (99)
192 PRK02910 light-independent pro 38.4 55 0.0012 29.0 4.5 33 94-129 354-386 (519)
193 PRK06732 phosphopantothenate-- 38.4 35 0.00077 26.6 3.0 32 10-43 17-48 (229)
194 PRK13608 diacylglycerol glucos 38.4 56 0.0012 27.5 4.4 36 7-42 5-44 (391)
195 cd01147 HemV-2 Metal binding p 38.4 62 0.0013 25.1 4.4 39 93-132 66-107 (262)
196 COG4088 Predicted nucleotide k 38.1 43 0.00093 26.4 3.3 35 9-43 3-37 (261)
197 PF02702 KdpD: Osmosensitive K 38.1 75 0.0016 24.7 4.6 41 5-45 3-43 (211)
198 PF06506 PrpR_N: Propionate ca 38.1 48 0.001 24.6 3.6 39 93-134 113-154 (176)
199 PRK00346 surE 5'(3')-nucleotid 38.0 2.1E+02 0.0045 22.9 7.5 95 24-131 16-124 (250)
200 PF01975 SurE: Survival protei 38.0 35 0.00076 26.1 2.8 102 24-134 16-136 (196)
201 PF01555 N6_N4_Mtase: DNA meth 37.9 36 0.00078 25.6 3.0 40 94-133 181-223 (231)
202 PRK14974 cell division protein 37.5 92 0.002 26.0 5.5 40 7-46 140-179 (336)
203 TIGR01425 SRP54_euk signal rec 37.4 89 0.0019 27.1 5.5 40 8-47 101-140 (429)
204 PRK07313 phosphopantothenoylcy 37.3 51 0.0011 24.9 3.6 40 9-49 3-42 (182)
205 PRK13609 diacylglycerol glucos 37.1 58 0.0013 27.0 4.3 38 94-131 96-135 (380)
206 KOG0991 Replication factor C, 37.0 31 0.00067 27.8 2.4 32 3-34 44-75 (333)
207 cd00861 ProRS_anticodon_short 36.4 83 0.0018 20.1 4.2 35 9-43 3-39 (94)
208 TIGR02852 spore_dpaB dipicolin 35.7 57 0.0012 24.9 3.6 39 9-47 2-40 (187)
209 PF09001 DUF1890: Domain of un 35.6 36 0.00078 24.6 2.3 28 23-50 15-42 (139)
210 COG1255 Uncharacterized protei 35.5 44 0.00095 23.6 2.7 22 23-44 24-45 (129)
211 PF01695 IstB_IS21: IstB-like 35.5 63 0.0014 24.1 3.9 43 7-49 47-89 (178)
212 cd01122 GP4d_helicase GP4d_hel 35.4 1.1E+02 0.0024 24.0 5.5 43 8-50 31-74 (271)
213 PRK06222 ferredoxin-NADP(+) re 35.3 1.1E+02 0.0024 24.5 5.5 39 8-48 99-137 (281)
214 PRK10422 lipopolysaccharide co 35.1 70 0.0015 26.4 4.5 48 1-50 1-50 (352)
215 cd01965 Nitrogenase_MoFe_beta_ 34.9 65 0.0014 27.6 4.3 34 94-130 363-396 (428)
216 PRK14478 nitrogenase molybdenu 34.8 49 0.0011 29.0 3.6 31 94-127 385-415 (475)
217 PF03853 YjeF_N: YjeF-related 34.7 49 0.0011 24.4 3.1 35 7-42 25-59 (169)
218 COG2910 Putative NADH-flavin r 34.6 42 0.0009 25.9 2.7 32 9-44 2-33 (211)
219 COG0300 DltE Short-chain dehyd 34.3 42 0.00092 27.1 2.9 20 24-43 19-38 (265)
220 PRK09444 pntB pyridine nucleot 34.2 75 0.0016 27.8 4.5 36 7-44 306-346 (462)
221 PF03796 DnaB_C: DnaB-like hel 34.2 1.3E+02 0.0027 23.7 5.6 42 9-50 21-63 (259)
222 PRK14089 ipid-A-disaccharide s 33.8 89 0.0019 26.2 4.8 33 102-134 76-113 (347)
223 PF01380 SIS: SIS domain SIS d 33.8 94 0.002 21.1 4.4 31 17-47 62-92 (131)
224 PRK07206 hypothetical protein; 33.4 1.6E+02 0.0035 24.8 6.5 90 8-125 3-95 (416)
225 TIGR00421 ubiX_pad polyprenyl 33.3 68 0.0015 24.2 3.7 27 24-50 15-41 (181)
226 PF02374 ArsA_ATPase: Anion-tr 33.3 79 0.0017 25.9 4.4 40 9-48 2-42 (305)
227 TIGR01005 eps_transp_fam exopo 33.3 3.6E+02 0.0078 25.0 9.1 40 7-46 545-586 (754)
228 cd01452 VWA_26S_proteasome_sub 33.0 1.2E+02 0.0026 23.1 5.0 61 9-70 110-173 (187)
229 PF02558 ApbA: Ketopantoate re 32.9 48 0.001 23.5 2.8 20 26-45 12-31 (151)
230 PF00391 PEP-utilizers: PEP-ut 32.8 32 0.00069 22.0 1.6 30 102-131 30-61 (80)
231 cd00395 Tyr_Trp_RS_core cataly 32.6 45 0.00097 26.9 2.8 24 19-43 16-39 (273)
232 PRK09361 radB DNA repair and r 32.6 1.2E+02 0.0026 23.1 5.2 36 9-44 25-60 (225)
233 PRK10867 signal recognition pa 32.3 1.3E+02 0.0029 26.0 5.8 42 8-49 101-143 (433)
234 cd03786 GT1_UDP-GlcNAc_2-Epime 32.2 67 0.0014 26.2 3.9 37 94-130 80-119 (363)
235 PRK06128 oxidoreductase; Provi 32.2 1.4E+02 0.0029 23.9 5.6 19 25-43 69-87 (300)
236 PRK10916 ADP-heptose:LPS hepto 32.1 2.9E+02 0.0062 22.7 9.6 43 9-51 2-46 (348)
237 PF07355 GRDB: Glycine/sarcosi 31.7 97 0.0021 26.1 4.6 37 94-130 72-118 (349)
238 PF02142 MGS: MGS-like domain 31.7 47 0.001 21.9 2.4 84 24-127 2-94 (95)
239 TIGR00176 mobB molybdopterin-g 31.7 1.2E+02 0.0025 22.1 4.7 35 10-44 2-36 (155)
240 TIGR03499 FlhF flagellar biosy 31.6 1.4E+02 0.003 24.1 5.5 40 8-47 195-236 (282)
241 COG2085 Predicted dinucleotide 31.6 57 0.0012 25.4 3.1 23 25-47 14-36 (211)
242 cd00805 TyrRS_core catalytic c 31.5 58 0.0013 26.2 3.3 25 19-44 17-41 (269)
243 PRK13982 bifunctional SbtC-lik 31.5 50 0.0011 29.1 3.0 38 8-45 257-306 (475)
244 PF13460 NAD_binding_10: NADH( 31.3 54 0.0012 23.8 2.9 21 25-45 12-32 (183)
245 PRK06249 2-dehydropantoate 2-r 30.9 67 0.0014 26.2 3.6 34 7-45 5-38 (313)
246 TIGR01675 plant-AP plant acid 30.9 65 0.0014 25.4 3.3 25 22-46 123-147 (229)
247 TIGR00745 apbA_panE 2-dehydrop 30.8 44 0.00096 26.5 2.5 19 26-44 5-23 (293)
248 PF01210 NAD_Gly3P_dh_N: NAD-d 30.8 51 0.0011 23.9 2.6 21 25-45 12-32 (157)
249 TIGR03087 stp1 sugar transfera 30.7 45 0.00097 27.9 2.6 32 13-45 8-40 (397)
250 PLN00016 RNA-binding protein; 30.6 75 0.0016 26.5 3.9 36 7-44 52-89 (378)
251 PLN02605 monogalactosyldiacylg 30.6 1E+02 0.0022 25.7 4.7 33 11-43 3-38 (382)
252 PF03205 MobB: Molybdopterin g 30.3 1.3E+02 0.0027 21.5 4.6 35 8-42 1-35 (140)
253 cd00561 CobA_CobO_BtuR ATP:cor 30.2 1.4E+02 0.0029 22.1 4.8 33 9-41 4-36 (159)
254 PRK13354 tyrosyl-tRNA syntheta 30.0 66 0.0014 27.7 3.5 33 11-44 39-74 (410)
255 PRK05920 aromatic acid decarbo 29.9 86 0.0019 24.2 3.8 42 8-50 4-45 (204)
256 PRK11889 flhF flagellar biosyn 29.7 1.5E+02 0.0032 25.9 5.4 40 8-47 242-281 (436)
257 TIGR00679 hpr-ser Hpr(Ser) kin 29.6 2E+02 0.0042 23.8 6.0 40 96-135 77-118 (304)
258 TIGR02113 coaC_strep phosphopa 29.6 68 0.0015 24.1 3.2 31 17-47 9-39 (177)
259 PF01316 Arg_repressor: Argini 29.5 32 0.0007 21.7 1.2 19 25-43 23-41 (70)
260 TIGR03568 NeuC_NnaA UDP-N-acet 29.4 1E+02 0.0023 25.8 4.6 39 94-132 85-126 (365)
261 PLN02331 phosphoribosylglycina 29.4 72 0.0016 24.7 3.3 30 102-131 28-57 (207)
262 COG0543 UbiB 2-polyprenylpheno 29.3 80 0.0017 25.0 3.7 38 9-48 109-148 (252)
263 COG3433 Aryl carrier domain [S 29.2 30 0.00064 22.1 0.9 22 22-43 32-53 (74)
264 cd01120 RecA-like_NTPases RecA 29.2 2E+02 0.0042 19.9 5.7 42 9-50 1-42 (165)
265 PRK05294 carB carbamoyl phosph 29.1 4.3E+02 0.0092 25.9 9.1 83 20-128 948-1037(1066)
266 PLN02211 methyl indole-3-aceta 29.1 1.4E+02 0.003 23.6 5.1 39 6-45 17-55 (273)
267 cd00860 ThrRS_anticodon ThrRS 29.1 1.4E+02 0.003 18.8 4.3 34 9-43 3-36 (91)
268 PRK14106 murD UDP-N-acetylmura 29.0 99 0.0021 26.4 4.5 33 8-45 6-38 (450)
269 TIGR00959 ffh signal recogniti 28.9 1.8E+02 0.0039 25.2 6.0 41 8-48 100-141 (428)
270 PF13378 MR_MLE_C: Enolase C-t 28.9 1.5E+02 0.0033 19.7 4.7 54 93-146 9-69 (111)
271 PRK10416 signal recognition pa 28.7 1.6E+02 0.0035 24.3 5.5 40 7-46 114-153 (318)
272 TIGR01286 nifK nitrogenase mol 28.7 1E+02 0.0022 27.4 4.5 31 95-128 430-460 (515)
273 COG0332 FabH 3-oxoacyl-[acyl-c 28.7 1.3E+02 0.0029 25.0 5.0 52 93-144 59-121 (323)
274 cd01143 YvrC Periplasmic bindi 28.6 1.2E+02 0.0025 22.3 4.4 40 92-132 51-91 (195)
275 PRK05802 hypothetical protein; 28.5 91 0.002 25.7 4.0 38 9-48 174-211 (320)
276 TIGR02114 coaB_strep phosphopa 28.5 61 0.0013 25.3 2.9 19 24-42 28-46 (227)
277 PRK13604 luxD acyl transferase 28.4 1.4E+02 0.0031 24.6 5.1 34 9-42 38-71 (307)
278 PF10087 DUF2325: Uncharacteri 28.4 1.3E+02 0.0029 19.7 4.2 36 102-137 48-89 (97)
279 COG0569 TrkA K+ transport syst 28.4 56 0.0012 25.4 2.6 21 25-45 13-33 (225)
280 PF02233 PNTB: NAD(P) transhyd 28.3 87 0.0019 27.5 3.9 36 7-44 307-347 (463)
281 PRK06835 DNA replication prote 28.3 1E+02 0.0022 25.6 4.3 43 8-50 184-226 (329)
282 PRK13011 formyltetrahydrofolat 28.3 75 0.0016 25.9 3.4 37 92-130 101-144 (286)
283 PRK05986 cob(I)alamin adenolsy 28.2 1.9E+02 0.004 22.2 5.3 36 7-42 22-57 (191)
284 PF05728 UPF0227: Uncharacteri 28.2 1.2E+02 0.0026 22.9 4.3 45 93-137 48-95 (187)
285 TIGR00288 conserved hypothetic 28.1 97 0.0021 23.0 3.7 39 9-52 108-147 (160)
286 TIGR00640 acid_CoA_mut_C methy 28.1 90 0.002 22.2 3.4 38 6-43 52-90 (132)
287 cd02067 B12-binding B12 bindin 28.0 1E+02 0.0023 20.9 3.7 34 7-40 50-84 (119)
288 cd01017 AdcA Metal binding pro 28.0 1.3E+02 0.0027 24.2 4.7 37 96-132 214-252 (282)
289 PF00175 NAD_binding_1: Oxidor 27.9 98 0.0021 20.3 3.5 26 21-46 8-35 (109)
290 PF07972 Flavodoxin_NdrI: NrdI 27.9 49 0.0011 23.4 2.0 39 92-130 59-108 (122)
291 TIGR01428 HAD_type_II 2-haloal 27.8 2.2E+02 0.0047 21.0 5.8 91 25-130 98-192 (198)
292 PRK06849 hypothetical protein; 27.8 1.6E+02 0.0035 24.7 5.5 35 7-45 4-38 (389)
293 TIGR02015 BchY chlorophyllide 27.7 80 0.0017 27.2 3.7 88 9-128 287-378 (422)
294 cd01916 ACS_1 Acetyl-CoA synth 27.4 65 0.0014 30.0 3.2 33 102-134 265-299 (731)
295 TIGR01454 AHBA_synth_RP 3-amin 27.4 2.4E+02 0.0051 21.0 5.9 91 24-129 80-174 (205)
296 PF02684 LpxB: Lipid-A-disacch 27.3 1.4E+02 0.0031 25.3 5.0 33 99-131 79-116 (373)
297 PRK06079 enoyl-(acyl carrier p 27.2 1.3E+02 0.0028 23.3 4.6 18 25-42 23-40 (252)
298 cd01976 Nitrogenase_MoFe_alpha 27.2 78 0.0017 27.2 3.5 35 93-130 360-394 (421)
299 KOG1014 17 beta-hydroxysteroid 27.1 64 0.0014 26.7 2.8 19 25-43 63-81 (312)
300 cd00550 ArsA_ATPase Oxyanion-t 26.8 1.2E+02 0.0027 23.9 4.4 37 10-46 3-39 (254)
301 PRK12921 2-dehydropantoate 2-r 26.6 81 0.0018 25.3 3.4 30 9-43 2-31 (305)
302 PF12695 Abhydrolase_5: Alpha/ 26.5 1.8E+02 0.0038 19.7 4.8 36 10-46 2-37 (145)
303 COG0052 RpsB Ribosomal protein 26.3 88 0.0019 25.0 3.3 31 103-133 157-189 (252)
304 PF13167 GTP-bdg_N: GTP-bindin 26.3 1.7E+02 0.0036 19.7 4.3 36 92-127 47-84 (95)
305 cd02032 Bchl_like This family 26.0 1.5E+02 0.0032 23.4 4.7 36 9-44 2-37 (267)
306 TIGR02193 heptsyl_trn_I lipopo 26.0 1.1E+02 0.0023 24.7 4.0 43 9-51 1-45 (319)
307 PF00289 CPSase_L_chain: Carba 26.0 53 0.0011 22.6 1.9 29 14-44 78-106 (110)
308 COG3046 Uncharacterized protei 26.0 90 0.002 27.1 3.5 26 20-45 51-76 (505)
309 PF10657 RC-P840_PscD: Photosy 25.9 1E+02 0.0022 21.9 3.2 40 7-46 46-85 (144)
310 cd00984 DnaB_C DnaB helicase C 25.8 2E+02 0.0044 22.0 5.5 43 9-51 15-58 (242)
311 PRK06067 flagellar accessory p 25.8 2.7E+02 0.0059 21.3 6.1 43 8-50 26-68 (234)
312 TIGR01862 N2-ase-Ialpha nitrog 25.8 81 0.0018 27.3 3.4 32 95-129 380-411 (443)
313 COG1618 Predicted nucleotide k 25.7 1.6E+02 0.0034 22.3 4.4 38 7-44 5-42 (179)
314 TIGR01449 PGP_bact 2-phosphogl 25.6 2.8E+02 0.0061 20.5 6.5 92 24-130 90-185 (213)
315 PLN02695 GDP-D-mannose-3',5'-e 25.5 1.7E+02 0.0038 24.3 5.3 34 6-43 20-53 (370)
316 TIGR02699 archaeo_AfpA archaeo 25.5 1.2E+02 0.0026 22.8 3.8 32 17-48 8-41 (174)
317 PLN02778 3,5-epimerase/4-reduc 25.4 1.2E+02 0.0027 24.4 4.2 33 6-42 8-40 (298)
318 PF03446 NAD_binding_2: NAD bi 25.4 82 0.0018 22.9 2.9 20 25-44 14-33 (163)
319 PLN03050 pyridoxine (pyridoxam 25.2 73 0.0016 25.3 2.8 34 8-43 61-95 (246)
320 PF09140 MipZ: ATPase MipZ; I 25.2 1.9E+02 0.0041 23.3 5.0 35 16-50 10-44 (261)
321 COG2120 Uncharacterized protei 25.1 1.5E+02 0.0033 23.2 4.6 36 7-43 10-46 (237)
322 PRK07077 hypothetical protein; 25.0 72 0.0016 25.3 2.7 32 102-133 135-166 (238)
323 PF01738 DLH: Dienelactone hyd 25.0 1.8E+02 0.0039 21.9 4.9 37 6-43 13-49 (218)
324 PF07801 DUF1647: Protein of u 24.9 2.8E+02 0.006 20.2 6.0 63 5-71 57-121 (142)
325 TIGR02700 flavo_MJ0208 archaeo 24.9 1.2E+02 0.0027 23.6 4.0 34 16-49 7-43 (234)
326 PF08897 DUF1841: Domain of un 24.8 52 0.0011 23.8 1.7 17 16-32 57-73 (137)
327 PLN02316 synthase/transferase 24.7 78 0.0017 30.8 3.2 41 6-46 586-632 (1036)
328 PF05724 TPMT: Thiopurine S-me 24.6 87 0.0019 24.3 3.1 29 10-44 40-68 (218)
329 PF01297 TroA: Periplasmic sol 24.6 80 0.0017 24.8 2.9 37 96-132 193-231 (256)
330 cd06167 LabA_like LabA_like pr 24.6 1.4E+02 0.003 21.1 4.0 31 9-44 102-132 (149)
331 PF02780 Transketolase_C: Tran 24.4 1.4E+02 0.0031 20.4 3.9 35 7-43 9-43 (124)
332 TIGR00708 cobA cob(I)alamin ad 24.4 2.1E+02 0.0045 21.5 4.9 35 7-41 5-39 (173)
333 cd03789 GT1_LPS_heptosyltransf 24.3 1.4E+02 0.0029 23.6 4.3 43 9-51 1-45 (279)
334 PF01935 DUF87: Domain of unkn 24.1 1.7E+02 0.0037 22.3 4.7 39 7-45 23-62 (229)
335 PRK05541 adenylylsulfate kinas 23.9 2.5E+02 0.0055 20.3 5.4 42 1-42 1-42 (176)
336 PRK03379 vitamin B12-transport 23.9 1.6E+02 0.0035 23.1 4.6 42 92-134 63-106 (260)
337 PF03537 Glyco_hydro_114: Glyc 23.8 1.3E+02 0.0029 18.9 3.3 33 101-133 25-59 (74)
338 PRK15411 rcsA colanic acid cap 23.8 1.6E+02 0.0034 22.4 4.3 36 97-132 42-86 (207)
339 PRK12377 putative replication 23.7 1.5E+02 0.0032 23.6 4.3 43 8-50 102-144 (248)
340 PRK08229 2-dehydropantoate 2-r 23.6 85 0.0018 25.7 3.0 32 8-44 3-34 (341)
341 PRK14098 glycogen synthase; Pr 23.6 84 0.0018 27.5 3.1 39 7-45 5-49 (489)
342 TIGR01281 DPOR_bchL light-inde 23.6 1.8E+02 0.0038 22.9 4.8 36 9-44 2-37 (268)
343 TIGR01680 Veg_Stor_Prot vegeta 23.5 1.1E+02 0.0023 25.0 3.4 27 20-46 146-172 (275)
344 PLN02828 formyltetrahydrofolat 23.5 1.3E+02 0.0027 24.4 3.8 40 92-131 82-131 (268)
345 PF08357 SEFIR: SEFIR domain; 23.5 1.3E+02 0.0028 21.4 3.6 30 11-40 5-35 (150)
346 PRK05234 mgsA methylglyoxal sy 23.5 2.9E+02 0.0062 19.9 9.2 93 17-133 12-116 (142)
347 PF13614 AAA_31: AAA domain; P 23.4 2.7E+02 0.0058 19.5 5.7 36 14-49 8-43 (157)
348 TIGR03264 met_CoM_red_C methyl 23.3 1.1E+02 0.0024 23.2 3.2 36 7-42 33-69 (194)
349 smart00382 AAA ATPases associa 23.3 1.3E+02 0.0027 19.9 3.5 39 7-45 2-40 (148)
350 PRK00889 adenylylsulfate kinas 23.2 2.1E+02 0.0045 20.8 4.8 37 8-44 5-41 (175)
351 cd03809 GT1_mtfB_like This fam 23.2 83 0.0018 25.0 2.9 28 19-46 16-43 (365)
352 PRK04148 hypothetical protein; 23.1 93 0.002 22.3 2.7 33 8-46 18-50 (134)
353 TIGR03880 KaiC_arch_3 KaiC dom 23.1 3.2E+02 0.007 20.7 6.0 44 9-52 18-61 (224)
354 PRK06719 precorrin-2 dehydroge 23.0 1E+02 0.0022 22.5 3.0 31 8-43 14-44 (157)
355 PF03767 Acid_phosphat_B: HAD 23.0 76 0.0016 24.8 2.5 23 23-45 119-141 (229)
356 TIGR01369 CPSaseII_lrg carbamo 22.8 5.7E+02 0.012 25.0 8.7 84 19-128 947-1038(1050)
357 PLN00141 Tic62-NAD(P)-related 22.7 2.3E+02 0.005 21.9 5.2 33 7-43 17-49 (251)
358 TIGR01284 alt_nitrog_alph nitr 22.7 84 0.0018 27.4 2.9 33 94-129 387-419 (457)
359 PRK06029 3-octaprenyl-4-hydrox 22.7 1.6E+02 0.0034 22.4 4.0 42 9-51 3-45 (185)
360 PRK06603 enoyl-(acyl carrier p 22.7 2.2E+02 0.0047 22.2 5.1 34 8-42 8-41 (260)
361 PRK12726 flagellar biosynthesi 22.6 2.7E+02 0.0058 24.1 5.7 39 9-47 208-246 (407)
362 PRK07231 fabG 3-ketoacyl-(acyl 22.6 96 0.0021 23.6 3.0 32 9-44 7-38 (251)
363 PRK13886 conjugal transfer pro 22.5 2.9E+02 0.0062 22.0 5.6 41 7-47 3-43 (241)
364 COG1090 Predicted nucleoside-d 22.4 91 0.002 25.5 2.8 21 25-45 12-32 (297)
365 cd02069 methionine_synthase_B1 22.3 1.4E+02 0.003 23.1 3.8 40 5-44 137-176 (213)
366 PF12846 AAA_10: AAA-like doma 22.3 1.8E+02 0.0038 22.8 4.6 39 8-46 2-40 (304)
367 PF06745 KaiC: KaiC; InterPro 22.3 2.2E+02 0.0047 21.7 4.9 46 8-53 20-66 (226)
368 PRK09545 znuA high-affinity zi 22.2 1.8E+02 0.0038 23.9 4.6 37 96-132 246-284 (311)
369 PF01266 DAO: FAD dependent ox 22.2 92 0.002 25.0 2.9 20 25-44 12-31 (358)
370 TIGR02329 propionate_PrpR prop 22.2 1.9E+02 0.0042 25.8 5.1 37 93-132 133-172 (526)
371 TIGR02622 CDP_4_6_dhtase CDP-g 21.8 1.7E+02 0.0037 23.9 4.5 31 8-42 5-35 (349)
372 PRK13768 GTPase; Provisional 21.8 2E+02 0.0044 22.7 4.7 37 9-45 4-40 (253)
373 PRK10490 sensor protein KdpD; 21.8 1.6E+02 0.0034 28.1 4.7 40 5-44 22-61 (895)
374 COG0784 CheY FOG: CheY-like re 21.8 1.9E+02 0.0042 19.1 4.2 39 97-136 45-91 (130)
375 PRK06526 transposase; Provisio 21.7 91 0.002 24.8 2.7 38 7-44 98-135 (254)
376 PRK10964 ADP-heptose:LPS hepto 21.7 1.6E+02 0.0036 23.8 4.3 40 9-48 2-43 (322)
377 cd03114 ArgK-like The function 21.7 2.4E+02 0.0053 20.2 4.8 36 10-45 2-37 (148)
378 TIGR03172 probable selenium-de 21.6 2.1E+02 0.0046 22.6 4.7 29 18-46 8-36 (232)
379 PRK05703 flhF flagellar biosyn 21.6 2.2E+02 0.0047 24.6 5.1 39 9-47 223-263 (424)
380 TIGR01689 EcbF-BcbF capsule bi 21.4 1.4E+02 0.003 21.1 3.3 25 23-47 28-52 (126)
381 cd02037 MRP-like MRP (Multiple 21.3 2E+02 0.0043 20.8 4.4 32 14-45 7-38 (169)
382 TIGR02237 recomb_radB DNA repa 21.2 3.6E+02 0.0077 20.1 6.1 43 9-51 14-57 (209)
383 PRK15043 transcriptional regul 21.2 1.7E+02 0.0038 23.3 4.1 37 8-45 163-199 (243)
384 TIGR01917 gly_red_sel_B glycin 21.2 1.9E+02 0.0041 25.1 4.6 37 94-130 68-114 (431)
385 KOG1838 Alpha/beta hydrolase [ 21.1 3E+02 0.0065 23.8 5.7 40 6-45 124-164 (409)
386 PRK07952 DNA replication prote 21.1 1.8E+02 0.004 23.0 4.3 39 9-47 101-139 (244)
387 cd02040 NifH NifH gene encodes 21.1 2.2E+02 0.0048 22.2 4.8 37 9-45 3-39 (270)
388 PF09334 tRNA-synt_1g: tRNA sy 21.0 1E+02 0.0022 26.3 3.0 28 19-46 17-47 (391)
389 cd00806 TrpRS_core catalytic c 21.0 1.1E+02 0.0024 24.7 3.1 27 19-45 15-41 (280)
390 TIGR01860 VNFD nitrogenase van 21.0 1.2E+02 0.0026 26.5 3.5 29 96-127 391-419 (461)
391 TIGR01918 various_sel_PB selen 20.9 1.9E+02 0.0042 25.1 4.6 37 94-130 68-114 (431)
392 TIGR00750 lao LAO/AO transport 20.9 3E+02 0.0064 22.3 5.7 41 6-46 33-73 (300)
393 cd02033 BchX Chlorophyllide re 20.7 2.5E+02 0.0053 23.4 5.1 38 8-45 32-69 (329)
394 PRK06101 short chain dehydroge 20.6 1.1E+02 0.0024 23.4 3.0 19 25-43 15-33 (240)
395 PF07755 DUF1611: Protein of u 20.6 2.5E+02 0.0054 23.2 5.0 38 7-44 112-150 (301)
396 TIGR01007 eps_fam capsular exo 20.6 3.7E+02 0.0079 20.0 6.2 39 9-47 19-58 (204)
397 PF03403 PAF-AH_p_II: Platelet 20.6 96 0.0021 26.3 2.8 36 7-42 99-134 (379)
398 PF07302 AroM: AroM protein; 20.6 2.1E+02 0.0046 22.4 4.4 37 99-135 175-214 (221)
399 PRK07454 short chain dehydroge 20.6 1.1E+02 0.0024 23.3 3.0 21 24-44 19-39 (241)
400 TIGR03029 EpsG chain length de 20.6 2.7E+02 0.006 21.9 5.3 38 7-44 102-141 (274)
401 CHL00072 chlL photochlorophyll 20.5 2.3E+02 0.0051 22.9 4.9 36 9-44 2-37 (290)
402 TIGR03018 pepcterm_TyrKin exop 20.5 3E+02 0.0064 20.7 5.3 38 9-46 37-76 (207)
403 PLN02735 carbamoyl-phosphate s 20.5 7.9E+02 0.017 24.3 9.1 84 19-128 982-1073(1102)
404 PRK06194 hypothetical protein; 20.4 1.1E+02 0.0023 24.1 2.9 20 24-43 19-38 (287)
405 PRK07666 fabG 3-ketoacyl-(acyl 20.4 1.1E+02 0.0025 23.2 3.0 21 24-44 20-40 (239)
406 PRK08181 transposase; Validate 20.3 1.7E+02 0.0037 23.5 4.1 38 8-45 107-144 (269)
407 TIGR03877 thermo_KaiC_1 KaiC d 20.3 3.3E+02 0.0071 21.1 5.6 44 8-51 22-65 (237)
408 cd05014 SIS_Kpsf KpsF-like pro 20.3 2.3E+02 0.005 19.1 4.3 31 17-47 56-86 (128)
409 cd05844 GT1_like_7 Glycosyltra 20.3 1.9E+02 0.0042 23.2 4.5 38 93-130 73-112 (367)
410 PF03308 ArgK: ArgK protein; 20.2 2.4E+02 0.0051 22.9 4.7 41 7-47 29-69 (266)
411 PRK05634 nucleosidase; Provisi 20.2 1E+02 0.0022 23.3 2.6 30 104-133 126-155 (185)
412 PRK14494 putative molybdopteri 20.2 2.4E+02 0.0053 22.1 4.8 34 9-42 3-36 (229)
413 PF01494 FAD_binding_3: FAD bi 20.2 1.1E+02 0.0024 24.5 3.0 20 24-43 13-32 (356)
414 PRK13234 nifH nitrogenase redu 20.0 2.6E+02 0.0056 22.6 5.1 36 9-44 6-41 (295)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=5.7e-32 Score=232.14 Aligned_cols=176 Identities=45% Similarity=0.824 Sum_probs=131.8
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCc
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSEN 84 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~ 84 (189)
.++.||+++|+|+|||+|||++|||+|++||+.|||++|+.+..++.+........+..|+++.+|+|..++++|++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 34579999999999999999999999999999999999999877665543211111124999999987655688876554
Q ss_pred ccCCCC--------------CCCHHHhhhhc--CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCC
Q 042879 85 LNEMTS--------------QPDMPVNLQEH--KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEP 148 (189)
Q Consensus 85 ~~~~~~--------------~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~ 148 (189)
...++. .+.++++|++. +++|||+|.|++|+.+||+++|||+++||+++++++++++++....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 332221 13344666543 68999999999999999999999999999999999998877654333
Q ss_pred CCCCCCCCCceecCCCCCCcccccccCCcccc
Q 042879 149 HKKVSSVSEPFVIPNLPGDIKLTRNQLPDTMK 180 (189)
Q Consensus 149 ~~~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~ 180 (189)
.....++...+.+||+|+.+.++.+|||+++.
T Consensus 166 ~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~ 197 (491)
T PLN02534 166 HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFV 197 (491)
T ss_pred cccCCCCCceeecCCCCccccccHHHCChhhc
Confidence 22222233457799998645688899998654
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.98 E-value=1.9e-31 Score=228.71 Aligned_cols=173 Identities=28% Similarity=0.490 Sum_probs=130.2
Q ss_pred CCCC--CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCC
Q 042879 1 MAGE--IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGL 78 (189)
Q Consensus 1 m~~~--~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~ 78 (189)
|.+. ++++||+++|||+|||+|||++|||+|+++|++|||++|+.+.+++.+... ....++++.+|+|.. +++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCC
Confidence 5553 457899999999999999999999999999999999999999877654421 113588888887653 477
Q ss_pred CCCCCcccCCCC-------------CCCHHHhhhhc--CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHH
Q 042879 79 PEGSENLNEMTS-------------QPDMPVNLQEH--KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACL 143 (189)
Q Consensus 79 p~~~~~~~~~~~-------------~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~ 143 (189)
|++.+....++. .+.+.+++++. +++|||+|+|++|+.+||+++|||++.|||++|+++++|+++
T Consensus 76 PdG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~ 155 (477)
T PLN02863 76 PSGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSL 155 (477)
T ss_pred CCCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHH
Confidence 777654433221 22344556553 679999999999999999999999999999999999999998
Q ss_pred HhhCCCCC-CCCCCCc---eecCCCCCCcccccccCCccccC
Q 042879 144 MLYEPHKK-VSSVSEP---FVIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 144 ~~~~~~~~-~~~~~~~---~~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
+...+... ..+..+. ..+||+|+ ++.+|||.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~ 194 (477)
T PLN02863 156 WREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRS 194 (477)
T ss_pred hhcccccccccccccccccCCCCCCCC---cChHhCchhhhc
Confidence 75433211 1111112 24889886 788999987753
No 3
>PLN02555 limonoid glucosyltransferase
Probab=99.97 E-value=3.8e-30 Score=220.54 Aligned_cols=172 Identities=22% Similarity=0.398 Sum_probs=122.9
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh--c-ccc-ccCC-CceEEEEeeCCCCC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA--I-PRA-NELG-IEIDIKTIKFPSVE 75 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~--~-~~~-~~~~-~~i~~~~lp~~~~~ 75 (189)
|.|+..++||+++|+|+|||+|||++|||+|++||+.|||++|+.+..++.+. . ... ...+ ..+++..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 78888889999999999999999999999999999999999999877665421 1 100 0000 124444443
Q ss_pred CCCCCCCCcccCCC---------CCCCHHHhhhhc-----CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHH
Q 042879 76 VGLPEGSENLNEMT---------SQPDMPVNLQEH-----KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATA 141 (189)
Q Consensus 76 ~~~p~~~~~~~~~~---------~~~~l~~ll~~~-----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~ 141 (189)
+|+|++.+....+. ..+.++++|+++ +++|||+|+|++|+.+||+++|||+++||+++++++++++
T Consensus 76 dglp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~ 155 (480)
T PLN02555 76 DGWAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYY 155 (480)
T ss_pred CCCCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHH
Confidence 46765533211110 123455666542 3599999999999999999999999999999999999999
Q ss_pred HHHhhC-CCCCCCCCCCceecCCCCCCcccccccCCcccc
Q 042879 142 CLMLYE-PHKKVSSVSEPFVIPNLPGDIKLTRNQLPDTMK 180 (189)
Q Consensus 142 ~~~~~~-~~~~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~ 180 (189)
+++... +.....+.+..+.+||+|+ ++.+|||+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~ 192 (480)
T PLN02555 156 HYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLH 192 (480)
T ss_pred HHhhcCCCcccccCCCceeecCCCCC---cCHhhCccccc
Confidence 885421 1111111123467999987 88899998775
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=99.96 E-value=2.4e-29 Score=215.07 Aligned_cols=172 Identities=26% Similarity=0.458 Sum_probs=124.0
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCc
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSEN 84 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~ 84 (189)
+.++||+++|+|+|||+|||++|||+|++||++|||++|+.+..++.+.... ....|+++.+|+|.. +|+|++.+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~~~~~ 79 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPSSAES 79 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCCCccc
Confidence 4467999999999999999999999999999999999999987666532111 113599999998754 477765443
Q ss_pred ccCCCC-------------CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCCC
Q 042879 85 LNEMTS-------------QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHKK 151 (189)
Q Consensus 85 ~~~~~~-------------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 151 (189)
..++.. .+.+++++++.+++|||+|.|++|+.+||+++|||+++||++++++++++++++.+...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~ 159 (472)
T PLN02670 80 STDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGD 159 (472)
T ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhccc
Confidence 222210 1334466666688999999999999999999999999999999999999876653322211
Q ss_pred CCCCCCce-ecCCCCC---CcccccccCCcccc
Q 042879 152 VSSVSEPF-VIPNLPG---DIKLTRNQLPDTMK 180 (189)
Q Consensus 152 ~~~~~~~~-~iPg~p~---~~~~~~~dlp~~~~ 180 (189)
..+..+.. .+||+++ .+.++.+|||+++.
T Consensus 160 ~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~ 192 (472)
T PLN02670 160 LRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVE 192 (472)
T ss_pred CCCccccccCCCCcCCCCccccccHHHhhHHHh
Confidence 11111122 3676532 12367789998774
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.96 E-value=3.4e-29 Score=213.11 Aligned_cols=157 Identities=24% Similarity=0.345 Sum_probs=117.3
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCC-CC
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEG-SE 83 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~-~~ 83 (189)
++++||+++|+|+|||+|||++|||+|+++|++|||++|+.+.+++... ...+|+++.+| +|+|++ .+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccc
Confidence 3467999999999999999999999999999999999999876554321 11359998886 367652 22
Q ss_pred cccCCC---------CCCCHHHhhhhc----C-CCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCC
Q 042879 84 NLNEMT---------SQPDMPVNLQEH----K-PNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPH 149 (189)
Q Consensus 84 ~~~~~~---------~~~~l~~ll~~~----~-~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~ 149 (189)
...... ..+.++++|++. + ++|||+|+|++|+.+||+++|||+|.||++++++++++++.. ..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~-~~-- 148 (449)
T PLN02173 72 SAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY-IN-- 148 (449)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH-hc--
Confidence 211110 134566777653 3 499999999999999999999999999999999887776532 11
Q ss_pred CCCCCCCCceecCCCCCCcccccccCCccccCC
Q 042879 150 KKVSSVSEPFVIPNLPGDIKLTRNQLPDTMKQD 182 (189)
Q Consensus 150 ~~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~~~ 182 (189)
. +...+.+||+|+ ++.+|||+++.+.
T Consensus 149 -~---~~~~~~~pg~p~---l~~~dlp~~~~~~ 174 (449)
T PLN02173 149 -N---GSLTLPIKDLPL---LELQDLPTFVTPT 174 (449)
T ss_pred -c---CCccCCCCCCCC---CChhhCChhhcCC
Confidence 1 112356899987 7889999987653
No 6
>PLN00164 glucosyltransferase; Provisional
Probab=99.96 E-value=4.9e-29 Score=214.27 Aligned_cols=170 Identities=16% Similarity=0.330 Sum_probs=121.5
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCC----CeEEEEeCCcchH----HHhhhccccccCCCceEEEEeeCCCCCCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRG----VKTTVITTPANAT----LFSKAIPRANELGIEIDIKTIKFPSVEVG 77 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G----~~Vt~~t~~~~~~----~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 77 (189)
.++|||++|||+|||++||++|||+|++|| +.|||+++..+.. ++.+.+......+..|+++.+|++.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---- 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---- 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----
Confidence 367999999999999999999999999996 8999999886532 3333322111111258999987531
Q ss_pred CCCCCCcccC-CC-----CCCCHHHhhhhc--CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCC
Q 042879 78 LPEGSENLNE-MT-----SQPDMPVNLQEH--KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPH 149 (189)
Q Consensus 78 ~p~~~~~~~~-~~-----~~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~ 149 (189)
.|++.+.... +. ..+.++++++++ +++|||+|+|++|+.+||+++|||++.|||+++++++++++++.....
T Consensus 78 ~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 157 (480)
T PLN00164 78 PPTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEE 157 (480)
T ss_pred CCCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccc
Confidence 3333322211 10 134566777765 569999999999999999999999999999999999999998764211
Q ss_pred C--CCCCCCCceecCCCCCCcccccccCCccccCC
Q 042879 150 K--KVSSVSEPFVIPNLPGDIKLTRNQLPDTMKQD 182 (189)
Q Consensus 150 ~--~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~~~ 182 (189)
. +..+....+.+||+|+ ++.+|||.++++.
T Consensus 158 ~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~ 189 (480)
T PLN00164 158 VAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDK 189 (480)
T ss_pred ccCcccccCcceecCCCCC---CChHHCCchhcCC
Confidence 1 1111113467999986 7889999877643
No 7
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.96 E-value=2.7e-28 Score=210.10 Aligned_cols=172 Identities=60% Similarity=1.078 Sum_probs=121.1
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccc--cCCCceEEEEeeCCCCCCCCCCCCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRAN--ELGIEIDIKTIKFPSVEVGLPEGSE 83 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~--~~~~~i~~~~lp~~~~~~~~p~~~~ 83 (189)
++.||+++|+|++||+|||++|||+|++||++|||++|+.+...+++...... ..+..+++..++++..++++|++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46799999999999999999999999999999999999988766654432110 0112346666666544346776543
Q ss_pred cccCCC----------------C----CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHH
Q 042879 84 NLNEMT----------------S----QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACL 143 (189)
Q Consensus 84 ~~~~~~----------------~----~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~ 143 (189)
....+. . .+.+++++++.++||||+|.|++|+.++|+++|||+|+||+++++++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 322110 0 11233444444799999999999999999999999999999999999988877
Q ss_pred HhhCCCCCCCCCCCceecCCCCCCcccccccCCc
Q 042879 144 MLYEPHKKVSSVSEPFVIPNLPGDIKLTRNQLPD 177 (189)
Q Consensus 144 ~~~~~~~~~~~~~~~~~iPg~p~~~~~~~~dlp~ 177 (189)
....+.....++...+.+||+|+.++++.+++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~ 197 (482)
T PLN03007 164 RVHKPQKKVASSSEPFVIPDLPGDIVITEEQIND 197 (482)
T ss_pred HhcccccccCCCCceeeCCCCCCccccCHHhcCC
Confidence 6432222211122345699998546677788885
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.96 E-value=6e-29 Score=212.91 Aligned_cols=169 Identities=18% Similarity=0.288 Sum_probs=123.8
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHh-hCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCC-CCCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFG-SRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLP-EGSE 83 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La-~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p-~~~~ 83 (189)
.++||+++|+|+|||++||++|||+|+ ++|++|||++|+.+.+++.+... ...+|+++.+|++.. +++| ++..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~-~glp~~~~~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDI-SGLVDPSAH 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccc-cCCCCCCcc
Confidence 467999999999999999999999998 78999999999988765533211 112589999987653 3564 2221
Q ss_pred cccCCC-----CCCCHHHhhhhc--CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCCCCC--C
Q 042879 84 NLNEMT-----SQPDMPVNLQEH--KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHKKVS--S 154 (189)
Q Consensus 84 ~~~~~~-----~~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~--~ 154 (189)
....+. ..+.+++++++. +++|||+|+|++|+.+||+++|||+|.||+++|++++++++++.+....... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~ 158 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTV 158 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccccc
Confidence 111110 124566777764 6899999999999999999999999999999999999988887542211111 1
Q ss_pred CCCceecCCCCCCcccccccCCccccCC
Q 042879 155 VSEPFVIPNLPGDIKLTRNQLPDTMKQD 182 (189)
Q Consensus 155 ~~~~~~iPg~p~~~~~~~~dlp~~~~~~ 182 (189)
..+.+.+||+|+ ++.+|||..+.++
T Consensus 159 ~~~~~~iPg~~~---l~~~dlp~~~~~~ 183 (481)
T PLN02992 159 QRKPLAMPGCEP---VRFEDTLDAYLVP 183 (481)
T ss_pred CCCCcccCCCCc---cCHHHhhHhhcCC
Confidence 123467999987 7889999765543
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.96 E-value=7.7e-29 Score=211.40 Aligned_cols=165 Identities=21% Similarity=0.314 Sum_probs=119.1
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPE 80 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~ 80 (189)
|+++.++.||+++|+|+|||+|||++|||+|++||++|||++|+.+..+ .. . ...+|++..+| +++|+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-~----~~~~i~~~~ip-----~glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-D----DFTDFQFVTIP-----ESLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-c----CCCCeEEEeCC-----CCCCc
Confidence 7766778899999999999999999999999999999999999987521 11 0 11258888876 35665
Q ss_pred C-CCccc---CCC-----CCCCHHHhhhhc------CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHh
Q 042879 81 G-SENLN---EMT-----SQPDMPVNLQEH------KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLML 145 (189)
Q Consensus 81 ~-~~~~~---~~~-----~~~~l~~ll~~~------~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~ 145 (189)
+ .+... .+. ..+.++++++++ +++|||+|+|++|+.++|+++|||++.||++++++++++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~ 148 (451)
T PLN02410 69 SDFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDK 148 (451)
T ss_pred ccccccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHH
Confidence 3 22110 000 012344555442 57999999999999999999999999999999999999888765
Q ss_pred hCCCC---CCCC--CCCceecCCCCCCcccccccCCcccc
Q 042879 146 YEPHK---KVSS--VSEPFVIPNLPGDIKLTRNQLPDTMK 180 (189)
Q Consensus 146 ~~~~~---~~~~--~~~~~~iPg~p~~~~~~~~dlp~~~~ 180 (189)
+...+ ...+ +...+.+||+|+ ++.+|+|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~ 185 (451)
T PLN02410 149 LYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHW 185 (451)
T ss_pred HHhccCCCCccccccCccccCCCCCC---CChHHCcchhc
Confidence 42210 1111 122356999987 77899997653
No 10
>PLN02562 UDP-glycosyltransferase
Probab=99.96 E-value=5.4e-28 Score=206.32 Aligned_cols=165 Identities=24% Similarity=0.373 Sum_probs=120.1
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCC-
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSE- 83 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~- 83 (189)
..++||+++|+|+|||+|||++|||+|+++|++||++||..+.+++.+.... ..+|+++.+|. +++++..
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~~~ 74 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDPPR 74 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCccc
Confidence 4467999999999999999999999999999999999999887666543211 12589988863 3332211
Q ss_pred ccc----CC--CCCCCHHHhhhhc----CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCCCC-
Q 042879 84 NLN----EM--TSQPDMPVNLQEH----KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHKKV- 152 (189)
Q Consensus 84 ~~~----~~--~~~~~l~~ll~~~----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~- 152 (189)
... .+ ...+.++++++++ +++|||+|+|++|+.++|+++|||+++||++++++++++++++.+...+..
T Consensus 75 ~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 154 (448)
T PLN02562 75 DFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLIS 154 (448)
T ss_pred cHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccc
Confidence 010 00 0134466777654 358999999999999999999999999999999999999888754221111
Q ss_pred ----CCC-CCceecCCCCCCcccccccCCccccC
Q 042879 153 ----SSV-SEPFVIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 153 ----~~~-~~~~~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
..+ +..+.+||+|+ ++.+|+|+++.+
T Consensus 155 ~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~ 185 (448)
T PLN02562 155 ETGCPRQLEKICVLPEQPL---LSTEDLPWLIGT 185 (448)
T ss_pred cccccccccccccCCCCCC---CChhhCcchhcC
Confidence 011 11236999986 788999987654
No 11
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.95 E-value=7e-28 Score=205.36 Aligned_cols=156 Identities=20% Similarity=0.336 Sum_probs=115.6
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhh-CCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCc-
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGS-RGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSEN- 84 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~-~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~- 84 (189)
++||+++|+|+|||+|||++|||+|++ +|+.|||++|..+.. +....... ...+++++.++ +|+|++.+.
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~~-~~~~i~~~~i~-----dglp~g~~~~ 74 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNHN-NVENLSFLTFS-----DGFDDGVISN 74 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccCC-CCCCEEEEEcC-----CCCCCccccc
Confidence 569999999999999999999999996 799999999986521 11111111 11258888885 467655321
Q ss_pred ccCCC---------CCCCHHHhhhhc-----CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCC
Q 042879 85 LNEMT---------SQPDMPVNLQEH-----KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHK 150 (189)
Q Consensus 85 ~~~~~---------~~~~l~~ll~~~-----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~ 150 (189)
..... ..+.++++++++ +++|||+|.|++|+.+||+++|||++.||+++|++++++++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~---- 150 (455)
T PLN02152 75 TDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG---- 150 (455)
T ss_pred cccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc----
Confidence 11110 124566666642 459999999999999999999999999999999999999887631
Q ss_pred CCCCCCCceecCCCCCCcccccccCCccccC
Q 042879 151 KVSSVSEPFVIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 151 ~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
. ...+.+||+|+ ++.+|||++++.
T Consensus 151 ~----~~~~~iPglp~---l~~~dlp~~~~~ 174 (455)
T PLN02152 151 N----NSVFEFPNLPS---LEIRDLPSFLSP 174 (455)
T ss_pred C----CCeeecCCCCC---CchHHCchhhcC
Confidence 1 12467999987 788999998754
No 12
>PLN03004 UDP-glycosyltransferase
Probab=99.95 E-value=6.1e-28 Score=205.52 Aligned_cols=173 Identities=15% Similarity=0.238 Sum_probs=114.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCC--CeEEE--EeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRG--VKTTV--ITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGS 82 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~Vt~--~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~ 82 (189)
+.|||++|+|+|||+|||++|||+|++|| +.||+ +++..+...+.+.........++|+++.+|++...++.++..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 44554 555544333222211111111359999987542111111110
Q ss_pred CcccC-C-----CCCCCHHHhhhhc----CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCC--
Q 042879 83 ENLNE-M-----TSQPDMPVNLQEH----KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHK-- 150 (189)
Q Consensus 83 ~~~~~-~-----~~~~~l~~ll~~~----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~-- 150 (189)
..... + ...+.+.++++++ +++|||+|.|++|+.++|+++|||++.|||++|++++++++++......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPG 162 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccccc
Confidence 01000 0 0123455666654 4599999999999999999999999999999999999999987532111
Q ss_pred CCCCCCCceecCCCCCCcccccccCCccccCC
Q 042879 151 KVSSVSEPFVIPNLPGDIKLTRNQLPDTMKQD 182 (189)
Q Consensus 151 ~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~~~ 182 (189)
...++...+.+||+|+ ++.+|||++++++
T Consensus 163 ~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~ 191 (451)
T PLN03004 163 KNLKDIPTVHIPGVPP---MKGSDMPKAVLER 191 (451)
T ss_pred cccccCCeecCCCCCC---CChHHCchhhcCC
Confidence 1001223467999997 7889999987654
No 13
>PLN02210 UDP-glucosyl transferase
Probab=99.95 E-value=6e-28 Score=206.38 Aligned_cols=170 Identities=19% Similarity=0.361 Sum_probs=120.4
Q ss_pred CCCC-CCccEEEEecCCCCcChHHHHHHHHH--HhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCC
Q 042879 1 MAGE-IRKLHIIFFPLMAHGHMIPLVDMAKL--FGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVG 77 (189)
Q Consensus 1 m~~~-~~~~hvl~~p~p~~GH~~P~l~La~~--La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 77 (189)
|++. ..+.||+++|+|+|||+|||++|||+ |++||++|||++|+.+..++.+.. . ....+++..+| ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-~---~~~~~~~~~~~-----~g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-K---PRRPVDLVFFS-----DG 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-C---CCCceEEEECC-----CC
Confidence 5554 45679999999999999999999999 558999999999998876543211 0 11235555443 36
Q ss_pred CCCCCCc-ccC----CC--CCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhC-CC
Q 042879 78 LPEGSEN-LNE----MT--SQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYE-PH 149 (189)
Q Consensus 78 ~p~~~~~-~~~----~~--~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~-~~ 149 (189)
+|++.+. ... +. ..+.+++++++.++||||+|.|++|+.+||+++|||++.||++++++++++++++... ..
T Consensus 72 lp~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~ 151 (456)
T PLN02210 72 LPKDDPRAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSF 151 (456)
T ss_pred CCCCcccCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCC
Confidence 6655321 110 00 0234556666668999999999999999999999999999999999999988875321 11
Q ss_pred CCCCCCCCceecCCCCCCcccccccCCccccCC
Q 042879 150 KKVSSVSEPFVIPNLPGDIKLTRNQLPDTMKQD 182 (189)
Q Consensus 150 ~~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~~~ 182 (189)
....+..+.+.+||+|+ ++.+|||+.+++.
T Consensus 152 ~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~ 181 (456)
T PLN02210 152 PDLEDLNQTVELPALPL---LEVRDLPSFMLPS 181 (456)
T ss_pred CcccccCCeeeCCCCCC---CChhhCChhhhcC
Confidence 11111123467999986 7779999877653
No 14
>PLN03015 UDP-glucosyl transferase
Probab=99.95 E-value=7.6e-28 Score=205.32 Aligned_cols=171 Identities=18% Similarity=0.300 Sum_probs=122.0
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHHh--hhccccccCCCceEEEEeeCCCCCCCC-CCCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLFS--KAIPRANELGIEIDIKTIKFPSVEVGL-PEGS 82 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~~--~~~~~~~~~~~~i~~~~lp~~~~~~~~-p~~~ 82 (189)
++||+++|+|+|||+|||++|||+|+++ |+.|||+++..+...+. ....... ...+|+++.+|++.. +++ +.+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~~ 80 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPDA 80 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCCc
Confidence 5799999999999999999999999987 99999999887664431 1111110 112599999986543 344 3221
Q ss_pred CcccCC-----CCCCCHHHhhhhc--CCCEEEeCCCcchHHHHHHHhCCC-eEEEechhHHHHHHHHHHHhhCCC-CC-C
Q 042879 83 ENLNEM-----TSQPDMPVNLQEH--KPNCLVADMLFPWATDAAAKFGIP-RLVFHGTSFLSLCATACLMLYEPH-KK-V 152 (189)
Q Consensus 83 ~~~~~~-----~~~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP-~v~f~~~~a~~~~~~~~~~~~~~~-~~-~ 152 (189)
.....+ ...+.++++|+++ +++|||+|+|++|+.+||+++||| +++|++++++.++++++++.+... .. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~ 160 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEY 160 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccccc
Confidence 110000 0134567777765 689999999999999999999999 699999999999999998764321 11 0
Q ss_pred CCCCCceecCCCCCCcccccccCCccccCC
Q 042879 153 SSVSEPFVIPNLPGDIKLTRNQLPDTMKQD 182 (189)
Q Consensus 153 ~~~~~~~~iPg~p~~~~~~~~dlp~~~~~~ 182 (189)
.+..+.+.+||+|+ ++.+|||..++++
T Consensus 161 ~~~~~~~~vPg~p~---l~~~dlp~~~~~~ 187 (470)
T PLN03015 161 VDIKEPLKIPGCKP---VGPKELMETMLDR 187 (470)
T ss_pred CCCCCeeeCCCCCC---CChHHCCHhhcCC
Confidence 11123467999987 8889999877653
No 15
>PLN02207 UDP-glycosyltransferase
Probab=99.95 E-value=5.9e-27 Score=200.19 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=116.6
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCC--CeEEEEeCCcch-HHHhhhccccccCCCceEEEEeeCCCCCCCCCC--
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRG--VKTTVITTPANA-TLFSKAIPRANELGIEIDIKTIKFPSVEVGLPE-- 80 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~Vt~~t~~~~~-~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~-- 80 (189)
+++||+++|+|+|||+|||++|||+|++|| +.|||++|+.+. ......+.+.......|+++.+|.... .++
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTLG 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCccc
Confidence 357999999999999999999999999998 999999999875 223322221111113599999984211 111
Q ss_pred CCCccc--------CCCC--CCCHHHhhhhc-----CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHh
Q 042879 81 GSENLN--------EMTS--QPDMPVNLQEH-----KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLML 145 (189)
Q Consensus 81 ~~~~~~--------~~~~--~~~l~~ll~~~-----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~ 145 (189)
+.+... .+.. .+.+.+++++. +++|||+|.|++|+.+||+++|||++.||+++|++++++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 111111 0100 12244555432 34899999999999999999999999999999999999998875
Q ss_pred hCC-CCCC--CCCCCceecCCC-CCCcccccccCCccccC
Q 042879 146 YEP-HKKV--SSVSEPFVIPNL-PGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 146 ~~~-~~~~--~~~~~~~~iPg~-p~~~~~~~~dlp~~~~~ 181 (189)
... .... .+.+..+.+||+ |+ ++.+|||+++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~ 195 (468)
T PLN02207 159 RHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFV 195 (468)
T ss_pred ccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcC
Confidence 321 1111 111234779999 44 888999987753
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.95 E-value=2.5e-27 Score=203.99 Aligned_cols=169 Identities=20% Similarity=0.297 Sum_probs=115.1
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCC--CeEEEEeCCcchHHH---hhhcccccc-CCCceEEEEeeCCCCCCCCCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRG--VKTTVITTPANATLF---SKAIPRANE-LGIEIDIKTIKFPSVEVGLPE 80 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~Vt~~t~~~~~~~~---~~~~~~~~~-~~~~i~~~~lp~~~~~~~~p~ 80 (189)
|.|||++|+|+|||++||++|||+|++|| +.|||++|+.+.+++ .+...+... ...+|+++.+|++.. ++
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 67999999999999999999999999998 899999999876532 111111110 123599999875421 11
Q ss_pred C-CCcc-cCCCC-----CCCHHHhhhhc------CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhC
Q 042879 81 G-SENL-NEMTS-----QPDMPVNLQEH------KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYE 147 (189)
Q Consensus 81 ~-~~~~-~~~~~-----~~~l~~ll~~~------~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 147 (189)
. .... ..+.. .+.+++++++. +++|||+|+|++|+.+||+++|||++.|||++|++++++++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 78 TEDPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 1 0000 00000 12233444321 2489999999999999999999999999999999999999987643
Q ss_pred CCC-----CCCCCCCceecCCCCCCcccccccCCccccC
Q 042879 148 PHK-----KVSSVSEPFVIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 148 ~~~-----~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
... +..+..+.+.+||++. +++.+|||+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~ 194 (481)
T PLN02554 158 DEKKYDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLS 194 (481)
T ss_pred cccccCccccCCCCceeECCCCCC--CCCHHHCCCcccC
Confidence 211 1111223467999952 2788999987643
No 17
>PLN02208 glycosyltransferase family protein
Probab=99.94 E-value=9.6e-27 Score=198.10 Aligned_cols=158 Identities=19% Similarity=0.366 Sum_probs=114.5
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCc
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSEN 84 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~ 84 (189)
+.++||+++|+|++||++||++|||+|++||++|||+|+..+..++.+.. .....+++..+|.++ .+++|++.+.
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~-~dgLp~g~~~ 76 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPP-VNGLPAGAET 76 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCC-ccCCCCCccc
Confidence 35789999999999999999999999999999999999987766554321 112357888777642 2477766442
Q ss_pred ccCCC-------------CCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCCC
Q 042879 85 LNEMT-------------SQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHKK 151 (189)
Q Consensus 85 ~~~~~-------------~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 151 (189)
...+. ..+.+++++++.++||||+| +++|+.++|+++|||++.||++++++++ +++++. ..
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~ 150 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GK 150 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cc
Confidence 22111 02345566766689999999 6899999999999999999999998765 555442 11
Q ss_pred CCCCCCceecCCCCCC-cccccccCCcc
Q 042879 152 VSSVSEPFVIPNLPGD-IKLTRNQLPDT 178 (189)
Q Consensus 152 ~~~~~~~~~iPg~p~~-~~~~~~dlp~~ 178 (189)
. . ..+||+|.. +.++.+|+|.+
T Consensus 151 ~---~--~~~pglp~~~~~~~~~~~~~~ 173 (442)
T PLN02208 151 L---G--VPPPGYPSSKVLFRENDAHAL 173 (442)
T ss_pred c---C--CCCCCCCCcccccCHHHcCcc
Confidence 1 1 226899851 23678899963
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.94 E-value=2.4e-26 Score=197.60 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=111.3
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCC---eEEEEeCCcchH-HHhhhccccccCCCceEEEEeeCCCCCCCCCCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGV---KTTVITTPANAT-LFSKAIPRANELGIEIDIKTIKFPSVEVGLPEG 81 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~---~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~ 81 (189)
+++||+++|+|+|||+|||++|||+|++||. .||++++..+.. ..+..+.......++|+++.+|++. + +++
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~~ 77 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PPP 77 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Ccc
Confidence 4679999999999999999999999999984 567777654432 1111111111112359999998642 1 211
Q ss_pred CC----cc-cCCC-----CCCCHHHhhhhc----------CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHH
Q 042879 82 SE----NL-NEMT-----SQPDMPVNLQEH----------KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATA 141 (189)
Q Consensus 82 ~~----~~-~~~~-----~~~~l~~ll~~~----------~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~ 141 (189)
.+ .. ..+. ..+.+++.++++ +++|||+|+|++|+.+||+++|||+++||+++++++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 11 00 0000 012233333321 3589999999999999999999999999999999999999
Q ss_pred HHHhhCCC-C-CC--CCCCCceecCCCCCCcccccccCCccccC
Q 042879 142 CLMLYEPH-K-KV--SSVSEPFVIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 142 ~~~~~~~~-~-~~--~~~~~~~~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
+++..... . +. .+..+.+.+||+|+ .++..|||..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~iPgl~~--~l~~~dlp~~~~~ 199 (475)
T PLN02167 158 YLPERHRKTASEFDLSSGEEELPIPGFVN--SVPTKVLPPGLFM 199 (475)
T ss_pred HHHHhccccccccccCCCCCeeECCCCCC--CCChhhCchhhhC
Confidence 88753211 1 11 11123467999953 2788999986654
No 19
>PLN02764 glycosyltransferase family protein
Probab=99.94 E-value=9.8e-26 Score=191.75 Aligned_cols=157 Identities=19% Similarity=0.396 Sum_probs=112.4
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
.+.||+++|+|+|||+|||++|||+|++||++|||++|+.+.+.+.+. . . ...++++..+++|. .+|+|++.+.+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~--~~~~~~v~~~~~p~-~~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-L--FPHNIVFRSVTVPH-VDGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-c--CCCCceEEEEECCC-cCCCCCccccc
Confidence 368999999999999999999999999999999999999887655432 1 0 11134444444432 24787765543
Q ss_pred cCCCC-------------CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCCCC
Q 042879 86 NEMTS-------------QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHKKV 152 (189)
Q Consensus 86 ~~~~~-------------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 152 (189)
.+++. .+.++++|++.+++|||+|+ ++|+.+||+++|||++.||++++++++++++ + ....
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~~~ 152 (453)
T PLN02764 79 SEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GGEL 152 (453)
T ss_pred ccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cccC
Confidence 22220 23455667666789999995 8999999999999999999999999998863 1 1111
Q ss_pred CCCCCceecCCCCC-CcccccccCCcc
Q 042879 153 SSVSEPFVIPNLPG-DIKLTRNQLPDT 178 (189)
Q Consensus 153 ~~~~~~~~iPg~p~-~~~~~~~dlp~~ 178 (189)
. ..+||+|. .+.++.+|+|+.
T Consensus 153 ---~--~~~pglp~~~v~l~~~~l~~~ 174 (453)
T PLN02764 153 ---G--VPPPGYPSSKVLLRKQDAYTM 174 (453)
T ss_pred ---C--CCCCCCCCCcccCcHhhCcch
Confidence 1 22589983 112677899874
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.94 E-value=1.2e-25 Score=192.79 Aligned_cols=165 Identities=20% Similarity=0.262 Sum_probs=120.2
Q ss_pred CCCccEEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCC
Q 042879 4 EIRKLHIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEG 81 (189)
Q Consensus 4 ~~~~~hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~ 81 (189)
+..+.||+++|+|++||+|||++||++|++| |++|||++++.+.+++.+... ..+++|+.+|. ++|++
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~~ 76 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPSE 76 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCCc
Confidence 3567899999999999999999999999999 999999999988776655321 13589988863 23322
Q ss_pred CCcccCC----C-----CCCCHHHhhhhc--CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCC
Q 042879 82 SENLNEM----T-----SQPDMPVNLQEH--KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHK 150 (189)
Q Consensus 82 ~~~~~~~----~-----~~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~ 150 (189)
.+..... . ..+.+++++++. ++||||+|.+++|+.++|+++|||+|.||++++++++++++++.+....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~ 156 (459)
T PLN02448 77 LVRAADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNG 156 (459)
T ss_pred cccccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhcc
Confidence 1110000 0 123455666654 6799999999999999999999999999999999999998887543211
Q ss_pred C--CCC---CCCce-ecCCCCCCcccccccCCccccC
Q 042879 151 K--VSS---VSEPF-VIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 151 ~--~~~---~~~~~-~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
. ... ..+.+ .+||+++ ++.+|||..+.+
T Consensus 157 ~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~ 190 (459)
T PLN02448 157 HFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHG 190 (459)
T ss_pred CCCCccccccCCccccCCCCCC---CChHHCchhhcC
Confidence 1 110 11222 4899986 788999987654
No 21
>PLN00414 glycosyltransferase family protein
Probab=99.94 E-value=6.7e-26 Score=193.14 Aligned_cols=131 Identities=21% Similarity=0.431 Sum_probs=101.1
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
+++||+++|+|+|||+|||++|||+|+++|++|||++|..+..++.+... ....|++..+++|. .+++|++.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~-~dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPP-VDGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCC-cCCCCCccccc
Confidence 36899999999999999999999999999999999999987665543210 11258887777654 25787764433
Q ss_pred cCCCC-------------CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHH
Q 042879 86 NEMTS-------------QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATAC 142 (189)
Q Consensus 86 ~~~~~-------------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 142 (189)
..+.. .+.+++++++.+++|||+|+ ++|+.+||+++|||++.||++++++++++++
T Consensus 78 ~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 78 SDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 22210 12344555555789999995 8999999999999999999999999998876
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.53 E-value=1.6e-14 Score=121.55 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=79.5
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCC-CCCCc--
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLP-EGSEN-- 84 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p-~~~~~-- 84 (189)
+||+++++|+.||++|++.||++|++|||+|+|+++......+.. .++++..++......... .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 489999999999999999999999999999999999866554443 246666554210000000 00000
Q ss_pred ---ccCCCC---------CCCH---HHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhH
Q 042879 85 ---LNEMTS---------QPDM---PVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 85 ---~~~~~~---------~~~l---~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 134 (189)
...... ...+ .+.+++.++||||+|.+..++..+|+++|||++.++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 000000 0111 1223334899999999999999999999999999988763
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.46 E-value=1.7e-13 Score=115.37 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=74.8
Q ss_pred ecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCC-CC-cccCCCC
Q 042879 13 FPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEG-SE-NLNEMTS 90 (189)
Q Consensus 13 ~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~-~~-~~~~~~~ 90 (189)
+.+|++||++|+++||++|.++||+||+++++.+.+.+++. ++++..++......+..+. .. ....+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 35789999999999999999999999999998877666543 4666666431110001100 00 0000000
Q ss_pred ---------CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 91 ---------QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 91 ---------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
.+.+.+++++.++||||+|.++.|+..+|+++|||++.+++..
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 0112233334489999999999999999999999999887643
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.13 E-value=1.9e-11 Score=105.64 Aligned_cols=137 Identities=26% Similarity=0.309 Sum_probs=84.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCccc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLN 86 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~ 86 (189)
+.|++++++|++||++|+++||++|+++||+||++++..+........ ... ....+.....++....++++.+.+...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSS-KSK-SIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcc-cce-eeeeeecChHHhhhhhhhhccchHHHH
Confidence 579999999999999999999999999999999999987654322110 000 000011111111111123333221100
Q ss_pred -CCCC---------CCCHHH----hhhhc--CCCEEEeCCCcchHHHHHHHhC-CCeEEEechhHHHHHHHHHHHh
Q 042879 87 -EMTS---------QPDMPV----NLQEH--KPNCLVADMLFPWATDAAAKFG-IPRLVFHGTSFLSLCATACLML 145 (189)
Q Consensus 87 -~~~~---------~~~l~~----ll~~~--~~d~vI~D~~~~~~~~vA~~lg-iP~v~f~~~~a~~~~~~~~~~~ 145 (189)
.... ...+++ +.... ++||+|+|.|+.|...+|.+.+ |+...+++.++...++....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 0000 011111 11111 3999999999999998888775 9999999999988777765543
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.09 E-value=1.8e-11 Score=88.34 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=72.3
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCC
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMT 89 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~ 89 (189)
|++...+..||++|++.|+++|.+|||+|++.+.......+.+ .+++++.++.. ..++........+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~---------~Gl~~~~~~~~---~~~~~~~~~~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA---------AGLEFVPIPGD---SRLPRSLEPLANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH---------TT-EEEESSSC---GGGGHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc---------cCceEEEecCC---cCcCcccchhhhhh
Confidence 6888999999999999999999999999999999887766644 25888887531 01111000000000
Q ss_pred C-------CCCHHHhhhh------------cCCCEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 90 S-------QPDMPVNLQE------------HKPNCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 90 ~-------~~~l~~ll~~------------~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
. ...+.+.+++ ...++++.+.....+..+|+++|||++.....+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 69 RLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 0 0011122211 146778888877788899999999999876654
No 26
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.75 E-value=1.8e-10 Score=99.84 Aligned_cols=35 Identities=31% Similarity=0.578 Sum_probs=22.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+|+++|+ +.||+++|..++++|++|||+||++++.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~ 36 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPS 36 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEee
Confidence 6888985 7899999999999999999999999874
No 27
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.64 E-value=7.8e-08 Score=83.85 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=74.6
Q ss_pred ccEEEEe-cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCC-C-CCCC-C-
Q 042879 7 KLHIIFF-PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVE-V-GLPE-G- 81 (189)
Q Consensus 7 ~~hvl~~-p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~-~~p~-~- 81 (189)
..+|+++ |.++.||++-+..++++|++|||+||+++..... ..... ...+++...++..... . .... +
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 3467755 8899999999999999999999999999765311 00000 0123444433211000 0 0000 0
Q ss_pred CC---c------------------ccCCCCCCCHHHhhh--hcCCCEEEeCCCcchHHHHHHHh-CCCeEEEechhH
Q 042879 82 SE---N------------------LNEMTSQPDMPVNLQ--EHKPNCLVADMLFPWATDAAAKF-GIPRLVFHGTSF 134 (189)
Q Consensus 82 ~~---~------------------~~~~~~~~~l~~ll~--~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~~~~a 134 (189)
.. . ++.+-..+.+.++|+ +.++|++|+|.+..++..+|+.+ |+|.|..++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00 0 000001344567776 44799999999988888899999 999877766443
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.26 E-value=1.1e-06 Score=74.78 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=42.0
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA 53 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~ 53 (189)
+.+|+++..|..||++|.+.|+++|..+||+|+++++......+.+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a 47 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA 47 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh
Confidence 35899999999999999999999999999999999999877666654
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.25 E-value=5.4e-06 Score=67.62 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=65.6
Q ss_pred EEEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCc---
Q 042879 9 HIIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSEN--- 84 (189)
Q Consensus 9 hvl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~--- 84 (189)
||++... -|.||+.-.+.|+++| +||+|+|++.......+.. .+....++..... .-......
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~ 68 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPI-QENGRLDRWKT 68 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEe-ccCCccchHHH
Confidence 5555554 4789999999999999 6999999998754433321 1222223211000 00000000
Q ss_pred ccCCC----C----CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHH
Q 042879 85 LNEMT----S----QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 85 ~~~~~----~----~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
..... . ...+.+++++.++|+||+|. .+.+...|+..|||++.+......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 00000 0 01122344445999999995 444678899999999987766644
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.17 E-value=1.4e-05 Score=65.71 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=64.2
Q ss_pred ecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceE-EEEeeCCCC--CCCCCCCCCccc---
Q 042879 13 FPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEID-IKTIKFPSV--EVGLPEGSENLN--- 86 (189)
Q Consensus 13 ~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~-~~~lp~~~~--~~~~p~~~~~~~--- 86 (189)
+...|.||+.|.+.++++|.+ ||+|+++++......++... +. +...|.... .++--.......
T Consensus 6 ~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~---------~~~~~~~p~~~~~~~~~~~~~~~~l~~~~ 75 (321)
T TIGR00661 6 VCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG---------FKVFETFPGIKLKGEDGKVNIVKTLRNKE 75 (321)
T ss_pred EeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc---------CcceeccCCceEeecCCcCcHHHHHHhhc
Confidence 556777999999999999999 99999998766222222221 11 111110000 001000000000
Q ss_pred CCC--CCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 87 EMT--SQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 87 ~~~--~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
.+. ......+++++.+||+||+| +-+.+..+|+.+|||.+.+.-+.
T Consensus 76 ~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 76 YSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 110 01112356666799999999 66667889999999999766544
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.43 E-value=0.0013 Score=54.88 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=72.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEM 88 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 88 (189)
+|++..--.-||+.|.+.+|++|.++||+|.|+++...... ...+ ..++.+..++. .++.- ......+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~-----~~g~~~~~~~~----~~l~~-~~~~~~~ 70 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE-----KENIPYYSISS----GKLRR-YFDLKNI 70 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc-----ccCCcEEEEec----cCcCC-CchHHHH
Confidence 57777766679999999999999999999999987653321 1111 12466666642 12210 0000000
Q ss_pred C-------CCCCHHHhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEechhHHHHH
Q 042879 89 T-------SQPDMPVNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFHGTSFLSLC 138 (189)
Q Consensus 89 ~-------~~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~~~~ 138 (189)
. ..-....++++.+||+||...-... +...|+-+|+|.+++-......++
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~ 129 (352)
T PRK12446 71 KDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLA 129 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHH
Confidence 0 0011224566669999999764443 467789999999887665544333
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0052 Score=51.51 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=70.1
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCC-eEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGV-KTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~-~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
.|++.....-||+.|-+.|+++|.++|+ +|.++.+......... ....+.++.++.. ++.. ......
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~----~~~~-~~~~~~ 69 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSG----GLRR-KGSLKL 69 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEecc----cccc-cCcHHH
Confidence 4666666777999999999999999999 5777755443221110 1124666666531 1111 001110
Q ss_pred CC-------CCCCHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEEechhHHH
Q 042879 88 MT-------SQPDMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVFHGTSFLS 136 (189)
Q Consensus 88 ~~-------~~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~~ 136 (189)
+. .....++++++.+||+||.=.-+. .+...|..+|||.+..-+-....
T Consensus 70 ~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G 127 (357)
T COG0707 70 LKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPG 127 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcc
Confidence 10 012234677777999999954443 34567789999999876655443
No 33
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.92 E-value=0.0072 Score=48.86 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=58.3
Q ss_pred CCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCH
Q 042879 15 LMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDM 94 (189)
Q Consensus 15 ~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l 94 (189)
--|.||+.=.+.||++|.++|++|+|++......... .+. ..++.+..++... +..+ ..+.+
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~-~i~-----~~g~~v~~~~~~~---~~~~---------d~~~~ 72 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLID-LLL-----SAGFPVYELPDES---SRYD---------DALEL 72 (279)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHH-HHH-----HcCCeEEEecCCC---chhh---------hHHHH
Confidence 4578999999999999999999999999875443222 111 1245665564210 0000 01224
Q ss_pred HHhhhhcCCCEEEeCCCcchH--HHHHHHhCCCeEEE
Q 042879 95 PVNLQEHKPNCLVADMLFPWA--TDAAAKFGIPRLVF 129 (189)
Q Consensus 95 ~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f 129 (189)
.+++++.++|+||.|...... ....++.+.+.+++
T Consensus 73 ~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~i 109 (279)
T TIGR03590 73 INLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVI 109 (279)
T ss_pred HHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEE
Confidence 566666689999999864322 23334455554443
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.86 E-value=0.0055 Score=50.34 Aligned_cols=109 Identities=21% Similarity=0.245 Sum_probs=65.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEM 88 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 88 (189)
+|++...-..||......|++.|.++||+|++++...... . ... ...++++..++.. +.... .....+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~~-----~~~~~~~~~~~~~----~~~~~-~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RLV-----PKAGIPLHTIPVG----GLRRK-GSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hcc-----cccCCceEEEEec----CcCCC-ChHHHH
Confidence 3566665566999999999999999999999998764221 1 110 0124666666542 11100 000000
Q ss_pred -------CCCCCHHHhhhhcCCCEEEeCCC--cchHHHHHHHhCCCeEEE
Q 042879 89 -------TSQPDMPVNLQEHKPNCLVADML--FPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 89 -------~~~~~l~~ll~~~~~d~vI~D~~--~~~~~~vA~~lgiP~v~f 129 (189)
.....+++++++.++|+|++..- ..++..+|+..|+|.+..
T Consensus 69 ~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 69 KAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 00112445666668999998752 223456788889999864
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.86 E-value=0.0049 Score=51.04 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=67.1
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
++|+++.....||..-++.|++.|.++||+|++++...... .... ...+++++.++.+ +.... .....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~-----~~~g~~~~~~~~~----~~~~~-~~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLV-----PKAGIEFHFIPSG----GLRRK-GSLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhcc-----ccCCCcEEEEecc----CcCCC-ChHHH
Confidence 47888876666999999999999999999999998754211 1110 0124566666532 11100 00000
Q ss_pred -------CCCCCCHHHhhhhcCCCEEEeCCCc-ch-HHHHHHHhCCCeEEE
Q 042879 88 -------MTSQPDMPVNLQEHKPNCLVADMLF-PW-ATDAAAKFGIPRLVF 129 (189)
Q Consensus 88 -------~~~~~~l~~ll~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f 129 (189)
+.....+++++++.+||+|++.... .| +..+++..++|.+..
T Consensus 70 l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 70 LKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 0001223456666689999999632 33 345677889999865
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.65 E-value=0.011 Score=48.57 Aligned_cols=110 Identities=21% Similarity=0.248 Sum_probs=65.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCC-CCC-Cccc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLP-EGS-ENLN 86 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p-~~~-~~~~ 86 (189)
+|+++..-..||+.....|++.|.++||+|++++.+.... .... ...+++++.++.. ... .+. ..+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~----~~~~~~~~~~l~ 70 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVG----GLRRKGSFRLIK 70 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEecc----CcCCCChHHHHH
Confidence 6888887777999977899999999999999998643211 1110 0124666666531 110 000 0000
Q ss_pred ----CCCCCCCHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEE
Q 042879 87 ----EMTSQPDMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVF 129 (189)
Q Consensus 87 ----~~~~~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f 129 (189)
.+.....+++++++.+||+|++..-.. ++..+++..|+|.+.+
T Consensus 71 ~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 000112344666777899999875332 2345677889999764
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.45 E-value=0.0019 Score=54.64 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=63.8
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
++|++..--..||+.|- .|+++|.++|.+++++..... .+++... ...+.+..++. .|+. +.+..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~v----~G~~---~~l~~ 70 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELSV----MGLR---EVLGR 70 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhhh----ccHH---HHHHH
Confidence 57888777777999999 999999999999999987643 3433210 01123333321 1221 11111
Q ss_pred CC----CCCCHHHhhhhcCCCEEEe-CCCcch--HHHHHHHhCCCeEEE
Q 042879 88 MT----SQPDMPVNLQEHKPNCLVA-DMLFPW--ATDAAAKFGIPRLVF 129 (189)
Q Consensus 88 ~~----~~~~l~~ll~~~~~d~vI~-D~~~~~--~~~vA~~lgiP~v~f 129 (189)
+. .....++++++.+||+||. |+-... ....|+.+|||.+.+
T Consensus 71 ~~~~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 71 LGRLLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 10 0123345666669998765 642212 234778999999987
No 38
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.34 E-value=0.041 Score=44.51 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=57.1
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHh
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVN 97 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~l 97 (189)
.|+-+.+..|+++|+++||+|++++....... ... ....++...+.+ ... ...........+.+.
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-~~~-------~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ 78 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRES-EGP-------ARVVPVPSVPLP----GYP---EIRLALPPRRRVRRL 78 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhc-cCC-------CCceeecccccC----ccc---ceEecccchhhHHHH
Confidence 69999999999999999999999998643211 000 001121111110 000 000001112334556
Q ss_pred hhhcCCCEEEeCCCcc--h-HHHHHHHhCCCeEEEec
Q 042879 98 LQEHKPNCLVADMLFP--W-ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~--~-~~~vA~~lgiP~v~f~~ 131 (189)
+++.++|+|++..... + +..+++..++|++....
T Consensus 79 ~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 115 (364)
T cd03814 79 LDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYH 115 (364)
T ss_pred HHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEe
Confidence 6666999998764332 2 35777889999987554
No 39
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.20 E-value=0.0079 Score=42.98 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhh--hh
Q 042879 23 PLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNL--QE 100 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll--~~ 100 (189)
=+.+|++.|+++||+|++++......... . ...++++..++.+... . ..........+.+++ ++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~ 71 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-E------EEDGVRVHRLPLPRRP----W---PLRLLRFLRRLRRLLAARR 71 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-E------EETTEEEEEE--S-SS----S---GGGHCCHHHHHHHHCHHCT
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-c------ccCCceEEeccCCccc----h---hhhhHHHHHHHHHHHhhhc
Confidence 36789999999999999999654432111 0 1135777777643211 0 011111112345666 44
Q ss_pred cCCCEEEeCCCcc-hHHHHHH-HhCCCeEEEech
Q 042879 101 HKPNCLVADMLFP-WATDAAA-KFGIPRLVFHGT 132 (189)
Q Consensus 101 ~~~d~vI~D~~~~-~~~~vA~-~lgiP~v~f~~~ 132 (189)
.++|+|.+-.... +...+++ ..++|.+...-.
T Consensus 72 ~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 72 ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp ---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 5899988776432 3345555 889999886654
No 40
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=95.91 E-value=0.11 Score=44.94 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCccEEEEecCC----C-CcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCC
Q 042879 5 IRKLHIIFFPLM----A-HGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLP 79 (189)
Q Consensus 5 ~~~~hvl~~p~p----~-~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p 79 (189)
.++.||+++..+ . .|=-+=+.+|++.|.++||+|+++++...... . ..++++..+... ..+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~--~--------~~g~~v~~~~~~----~~~ 121 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ--E--------FHGAKVIGSWSF----PCP 121 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc--c--------ccCceeeccCCc----CCc
Confidence 346789888422 1 23336778999999999999999997643210 0 012333222100 000
Q ss_pred CCCCcccCCCCCCCHHHhhhhcCCCEEEeCCC--cch-HHHHHHHhCCCeEEEe
Q 042879 80 EGSENLNEMTSQPDMPVNLQEHKPNCLVADML--FPW-ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 80 ~~~~~~~~~~~~~~l~~ll~~~~~d~vI~D~~--~~~-~~~vA~~lgiP~v~f~ 130 (189)
........+.....+.+++++.++|+|.+-.. ..+ +..+|+..|+|.++.+
T Consensus 122 ~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~ 175 (465)
T PLN02871 122 FYQKVPLSLALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSY 175 (465)
T ss_pred cCCCceeeccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEE
Confidence 00000000111123556777779999865432 223 3467889999998743
No 41
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.21 E-value=0.12 Score=41.75 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCH
Q 042879 15 LMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDM 94 (189)
Q Consensus 15 ~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l 94 (189)
--|+||+.=++.||+.|.++|+.++|++......-+..... .+.+... .. .
T Consensus 12 ~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~-------~f~~~~~------------~~--------~-- 62 (318)
T COG3980 12 EIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYE-------GFKVLEG------------RG--------N-- 62 (318)
T ss_pred ccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhh-------hccceee------------ec--------c--
Confidence 35789999999999999999999999998764432222100 0111000 00 0
Q ss_pred HHhhhhcCCCEEEeCCCcchH---HHHHHHhCCCeEEEechhHHHHH
Q 042879 95 PVNLQEHKPNCLVADMLFPWA---TDAAAKFGIPRLVFHGTSFLSLC 138 (189)
Q Consensus 95 ~~ll~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~~~~a~~~~ 138 (189)
+.+.+.++|++|.|.....+ ..+..|.|.+.+.|-.-..-.+.
T Consensus 63 -n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~ 108 (318)
T COG3980 63 -NLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK 108 (318)
T ss_pred -cccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh
Confidence 13444489999999887655 46777999999999877665444
No 42
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.19 E-value=0.11 Score=42.75 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=29.6
Q ss_pred EEEEecCCC-CcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPLMA-HGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~p~-~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+|+++.+|. .|.-.-+.+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 455555544 4788889999999999999999998764
No 43
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.14 E-value=0.013 Score=48.88 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=61.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
.+|++..---.||+.|-. +++.|.++++++.++..... .+..... ...+.++.++. .++. +....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~l~~----~g~~---~~~~~ 66 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-----ESLFDMEELAV----MGLV---EVLPR 66 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-----ccccCHHHhhh----ccHH---HHHHH
Confidence 367877777779999998 99999988888877765432 2332210 01122222221 0110 11000
Q ss_pred C----CCCCCHHHhhhhcCCCEEEe-CCCcchH--HHHHHHhCCCeEEEec
Q 042879 88 M----TSQPDMPVNLQEHKPNCLVA-DMLFPWA--TDAAAKFGIPRLVFHG 131 (189)
Q Consensus 88 ~----~~~~~l~~ll~~~~~d~vI~-D~~~~~~--~~vA~~lgiP~v~f~~ 131 (189)
+ .....+++++++.+||+|+. +.-..|. ...|++.|||.+.+..
T Consensus 67 ~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~ 117 (380)
T PRK00025 67 LPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVS 117 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeC
Confidence 0 01233556777779999765 4322343 3447788999887643
No 44
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.70 E-value=0.092 Score=43.73 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=44.8
Q ss_pred CccEEEEecC--CCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeC
Q 042879 6 RKLHIIFFPL--MAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKF 71 (189)
Q Consensus 6 ~~~hvl~~p~--p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 71 (189)
+.++|+|+.. -|-||+-=+..+|+.|++. |++|++++.......+. ...+++++.+|.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LPs 69 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLPS 69 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecCc
Confidence 3559999886 5669999999999999996 99999999876543222 124688888873
No 45
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=94.62 E-value=0.3 Score=41.05 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCC-----CCCHH--
Q 042879 23 PLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTS-----QPDMP-- 95 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~-----~~~l~-- 95 (189)
++.+||+.|+++||+|+++|....... .. +++.+.++....... ........... ...++
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~----------~~-~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPP----------PG-GVRVVRYRPPRGPTS--GTHPYLREFEEAVLRGQAVARAL 78 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCC----------CC-CeeEEEecCCCCCCC--CCCccchhHHHHHHHHHHHHHHH
Confidence 367899999999999999987654210 11 367666653211100 00000000000 00011
Q ss_pred -Hhh-hhcCCCEEEeCCCcchHHHHHHHh-CCCeEEEe
Q 042879 96 -VNL-QEHKPNCLVADMLFPWATDAAAKF-GIPRLVFH 130 (189)
Q Consensus 96 -~ll-~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~ 130 (189)
.+. +..+||+|++-.-+.++..+.+.+ ++|.+.+.
T Consensus 79 ~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 79 LALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 111 123799999997666666777665 48887744
No 46
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=94.59 E-value=0.34 Score=34.16 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=59.5
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCC
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMT 89 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~ 89 (189)
|+++.--...| ..++++.|.++|++|++++.......... ..++.+..++.+ ... ....+.
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~-----~k~---~~~~~~ 62 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP-----RKS---PLNYIK 62 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC-----CCc---cHHHHH
Confidence 55665544445 56889999999999999998543311111 135777776421 000 011111
Q ss_pred CCCCHHHhhhhcCCCEEEeCCCcc-hH--HHHHHHhC-CCeEEEec
Q 042879 90 SQPDMPVNLQEHKPNCLVADMLFP-WA--TDAAAKFG-IPRLVFHG 131 (189)
Q Consensus 90 ~~~~l~~ll~~~~~d~vI~D~~~~-~~--~~vA~~lg-iP~v~f~~ 131 (189)
.-.++.++++.+||.|.+-.... +. ..+++..| +|.+....
T Consensus 63 -~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 63 -YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred -HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 11355667777999997776654 22 23456777 88875443
No 47
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=94.42 E-value=0.2 Score=40.01 Aligned_cols=108 Identities=14% Similarity=0.270 Sum_probs=61.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEM 88 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 88 (189)
+|+++.....|+..-+.++++.|.++||+|++++....... .. ...+++.+.++.... .. .....+
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~--~~----~~~~~~ 66 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--EL------EALGVKVIPIPLDRR--GI----NPFKDL 66 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--cc------ccCCceEEecccccc--cc----ChHhHH
Confidence 35666655778899999999999999999999998754432 00 112466655543110 00 000000
Q ss_pred CCCCCHHHhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEe
Q 042879 89 TSQPDMPVNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 89 ~~~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 130 (189)
.....+.+++++.++|+|++...... +...++..+.+.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 67 KALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred HHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 00112345555668999888765443 2334443666655544
No 48
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=94.38 E-value=0.35 Score=40.73 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=56.1
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhh
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNL 98 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll 98 (189)
|--.-+.+|++.|+++||+|++++.......-... ...+++++.+|... ................+++++
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~------~~~~i~v~~~p~~~----~~~~~~~~~~~~~~~~l~~~~ 84 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY------LTNGLKVYYLPFVV----FYNQSTLPTFFGTFPLLRNIL 84 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc------ccCceeEEEeccee----ccCCccccchhhhHHHHHHHH
Confidence 55567899999999999999999975321110000 01246666665321 100000000011122344555
Q ss_pred hhcCCCEEEeCCCc-ch---HHHHHHHhCCCeEEE
Q 042879 99 QEHKPNCLVADMLF-PW---ATDAAAKFGIPRLVF 129 (189)
Q Consensus 99 ~~~~~d~vI~D~~~-~~---~~~vA~~lgiP~v~f 129 (189)
.+.++|+|-+-... .+ +..+++.+|+|.+..
T Consensus 85 ~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 85 IRERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 55689988655422 22 346688899998764
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.19 E-value=0.23 Score=41.06 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=57.8
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCC-CCCHHH
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTS-QPDMPV 96 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~-~~~l~~ 96 (189)
.|+-..+.+|++.|+++||+|++++........... ....++.+..++.... ...+.. .....+.. ...+.+
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 93 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPA-EYLPKE-ELWPYLDEFADDLLR 93 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccccc-cCCChh-hcchhHHHHHHHHHH
Confidence 478889999999999999999999865432111100 0113466655542110 000000 00000000 011223
Q ss_pred hhhhc--CCCEEEeCCCcc--hHHHHHHHhCCCeEEEec
Q 042879 97 NLQEH--KPNCLVADMLFP--WATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 97 ll~~~--~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~ 131 (189)
.+++. ++|+|++..... .+..+++.+|+|++....
T Consensus 94 ~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h 132 (398)
T cd03800 94 FLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFH 132 (398)
T ss_pred HHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEee
Confidence 44444 899998875332 345778899999876433
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=93.27 E-value=0.37 Score=38.75 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=55.9
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCC-CCCCCCCCCcccCCCC---CCC
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSV-EVGLPEGSENLNEMTS---QPD 93 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-~~~~p~~~~~~~~~~~---~~~ 93 (189)
.|+-.-...|++.|.++||+|+++++.......... .............. ................ ...
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKE-------VIGVVVYGRPIDEVLRSALPRDLFHLSDYDNPAVVAE 87 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccc-------cccceeeccccccccCCCchhhhhHHHhccCHHHHHH
Confidence 588888999999999999999999876543211100 00111111100000 0000000000000000 123
Q ss_pred HHHhhhhcCCCEEEeCCCcchH---HHHHHHhCCCeEEEec
Q 042879 94 MPVNLQEHKPNCLVADMLFPWA---TDAAAKFGIPRLVFHG 131 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~~ 131 (189)
+++++++.++|+|++.....+. ...+++.++|.+....
T Consensus 88 ~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h 128 (359)
T cd03823 88 FARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLH 128 (359)
T ss_pred HHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEe
Confidence 4456666689999888754433 3457888999987544
No 51
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=92.80 E-value=0.69 Score=37.54 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=56.9
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhh
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNL 98 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll 98 (189)
|--.-..+|++.|+++||+|++++.......... ..+++++.++... . .....+.....+..++
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~~---~-----~~~~~~~~~~~l~~~~ 74 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAELE--------AEGSRHIKLPFIS---K-----NPLRILLNVARLRRLI 74 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHH--------hcCCeEEEccccc---c-----chhhhHHHHHHHHHHH
Confidence 5556778999999999999999987543221111 0235555543210 0 0000010112234556
Q ss_pred hhcCCCEEEeCCC-cchH-HHHHHHhCCCeEEEechh
Q 042879 99 QEHKPNCLVADML-FPWA-TDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 99 ~~~~~d~vI~D~~-~~~~-~~vA~~lgiP~v~f~~~~ 133 (189)
++.++|+|++... ..|. ..+++..++|.+..+...
T Consensus 75 ~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 111 (355)
T cd03819 75 REEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGF 111 (355)
T ss_pred HHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCc
Confidence 6668999988753 3344 355678899988765543
No 52
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=91.19 E-value=0.51 Score=39.31 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=64.7
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCC----CCCCCH
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEM----TSQPDM 94 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~----~~~~~l 94 (189)
.|+.-+-.+.++|-++||+|.+.+-.... ....+. -.++.+..+-. .+ .+ ....+ .....+
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~--~~~LL~-----~yg~~y~~iG~----~g--~~--~~~Kl~~~~~R~~~l 75 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDE--TEELLD-----LYGIDYIVIGK----HG--DS--LYGKLLESIERQYKL 75 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccch--HHHHHH-----HcCCCeEEEcC----CC--CC--HHHHHHHHHHHHHHH
Confidence 38888999999999999999887765322 222211 12466655521 01 00 00111 011123
Q ss_pred HHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHH
Q 042879 95 PVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLM 144 (189)
Q Consensus 95 ~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 144 (189)
.+++++.+||++|+= ....+..+|.-+|+|.+.|.=+--+.....+.+|
T Consensus 76 ~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P 124 (335)
T PF04007_consen 76 LKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP 124 (335)
T ss_pred HHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehh
Confidence 344555589999962 3345678999999999999887655433333333
No 53
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=90.81 E-value=2.5 Score=35.85 Aligned_cols=99 Identities=15% Similarity=0.259 Sum_probs=59.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCC--eEEEEeCCcchHH-HhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGV--KTTVITTPANATL-FSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~--~Vt~~t~~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
.++-+-..+.|.++-...|+++|.+++. +|.+.++...... ..... +..+....+|. +.+
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~------~~~~~~~~~P~-----d~~------ 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALF------GDDVEHRYLPY-----DLP------ 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhc------CCCceEEEecC-----CcH------
Confidence 4556667778999999999999998764 4443332222222 22211 12344444442 111
Q ss_pred cCCCCCCCHHHhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEe
Q 042879 86 NEMTSQPDMPVNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 130 (189)
..++++++.++||+++.-....| ....+++.|+|.+...
T Consensus 114 ------~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 ------GAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred ------HHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 24668888889998875422334 3456788999998764
No 54
>PLN02846 digalactosyldiacylglycerol synthase
Probab=90.68 E-value=3.8 Score=35.72 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=30.5
Q ss_pred CccEEEEecC---CCC-cChHHHHHHHHHHhhCC-CeEEEEeCC
Q 042879 6 RKLHIIFFPL---MAH-GHMIPLVDMAKLFGSRG-VKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~---p~~-GH~~P~l~La~~La~~G-~~Vt~~t~~ 44 (189)
++.||++++- |.. |=.+..+.++..|+++| |+|+++.+.
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~ 46 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPW 46 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecC
Confidence 4678988864 444 66577788888999999 799999874
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=90.54 E-value=3.2 Score=32.80 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=53.9
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHh
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVN 97 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~l 97 (189)
.|.-.-+..|++.|.++||+|++++..... .... ....++.+..++.. ... ...........++++
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~---~~~~----~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ 78 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE---PPFY----ELDPKIKVIDLGDK----RDS---KLLARFKKLRRLRKL 78 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC---CCcc----ccCCccceeecccc----ccc---chhccccchHHHHHh
Confidence 466677889999999999999999876543 0000 01123444333211 000 000011112345566
Q ss_pred hhhcCCCEEEeCCCcchHHHHHHHhCC-CeEEEec
Q 042879 98 LQEHKPNCLVADMLFPWATDAAAKFGI-PRLVFHG 131 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~~~~vA~~lgi-P~v~f~~ 131 (189)
+++.++|+|+...........+...+. |.+...-
T Consensus 79 l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 113 (348)
T cd03820 79 LKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEH 113 (348)
T ss_pred hcccCCCEEEEcCchHHHHHHHHhhccccEEEecC
Confidence 666789999888755222333344554 6665443
No 56
>PLN00142 sucrose synthase
Probab=88.30 E-value=1.2 Score=41.35 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCCEEEeCCCcc-h-HHHHHHHhCCCeEEEec
Q 042879 102 KPNCLVADMLFP-W-ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 102 ~~d~vI~D~~~~-~-~~~vA~~lgiP~v~f~~ 131 (189)
+||+|.+-+... + +..+|+++|||.+...-
T Consensus 408 ~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 408 KPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 699999997665 4 35889999999986554
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=88.27 E-value=0.87 Score=38.76 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=31.1
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+|.++.....|+-.=+..+|+.|+++||+|++++...
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 346666666667777788999999999999999998653
No 58
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=87.42 E-value=8.2 Score=33.10 Aligned_cols=100 Identities=16% Similarity=0.331 Sum_probs=66.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEe-CCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVIT-TPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t-~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
-.+-+-..+.|=.+-...|.++|.++ +.++++-| |+......+... +..+...-+|+ +++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~-----D~~------ 112 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPL-----DLP------ 112 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCc-----Cch------
Confidence 45666677889999999999999998 88887766 443343444332 22345455553 121
Q ss_pred cCCCCCCCHHHhhhhcCCCE-EEeCCCc-chHHHHHHHhCCCeEEEec
Q 042879 86 NEMTSQPDMPVNLQEHKPNC-LVADMLF-PWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~-vI~D~~~-~~~~~vA~~lgiP~v~f~~ 131 (189)
..++++++.++||+ ||.+.=+ +....-+++.|+|.+....
T Consensus 113 ------~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 113 ------IAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred ------HHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 34678888888985 5666533 2345667899999998765
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.31 E-value=2.5 Score=30.49 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=40.3
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSK 52 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~ 52 (189)
++++|++...++.+|-.=..-++..|.++|++|+++...-....+..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 46799999999999999999999999999999999998766555443
No 60
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=87.06 E-value=3.7 Score=35.14 Aligned_cols=106 Identities=9% Similarity=0.141 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHhhCCC--eEEEEeCCcchHHH-hhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCC-----C
Q 042879 20 HMIPLVDMAKLFGSRGV--KTTVITTPANATLF-SKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTS-----Q 91 (189)
Q Consensus 20 H~~P~l~La~~La~~G~--~Vt~~t~~~~~~~~-~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~-----~ 91 (189)
=-.=+.+|+++|+.+|| +|+++|........ ............+++++.++.... .. .....+.. .
T Consensus 28 ~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~--~~----~~~~~~~~~~~~~~ 101 (439)
T TIGR02472 28 QTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPR--RY----LRKELLWPYLDELA 101 (439)
T ss_pred cchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCC--CC----cChhhhhhhHHHHH
Confidence 33557899999999997 99999964221100 000000000113577777754211 00 00000000 0
Q ss_pred CCHHHhhhhc--CCCEEEeCCCc-ch-HHHHHHHhCCCeEEEec
Q 042879 92 PDMPVNLQEH--KPNCLVADMLF-PW-ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 92 ~~l~~ll~~~--~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~~ 131 (189)
..+.+++++. ++|+|-+-.+. .+ +..+++.+|+|++...-
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H 145 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGH 145 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecc
Confidence 1233455543 69999887533 22 34667889999876544
No 61
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=86.58 E-value=2 Score=29.69 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=36.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSK 52 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~ 52 (189)
+|++...++..|-..+.-++..|..+|++|.++......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 47888999999999999999999999999988876655444433
No 62
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=84.95 E-value=1.2 Score=32.04 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
|==.-+.+|+++|+++||+||+++...
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 556778999999999999999997764
No 63
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.74 E-value=15 Score=29.88 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=53.1
Q ss_pred HHHHHHHhhCCCeEEEEeCCcchHHHhhhcc-ccc-cCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcC
Q 042879 25 VDMAKLFGSRGVKTTVITTPANATLFSKAIP-RAN-ELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHK 102 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~-~~~-~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~ 102 (189)
+.+++.|+++|++|..+..+.....+..... ... ..-...+.+-+|.|-..++- .......-.....-+++++..+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~--~i~~~~~~~~~~l~~~~l~~~~ 91 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDG--KVATVFSNEKVVLTPELLESTK 91 (287)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCc--eEecccccCCccccHHHHHhcC
Confidence 5789999999999999987622111111100 000 00123455556654211110 0000000000111256777777
Q ss_pred CCEEEeCCCcchHHH-HHHHhCCCeE
Q 042879 103 PNCLVADMLFPWATD-AAAKFGIPRL 127 (189)
Q Consensus 103 ~d~vI~D~~~~~~~~-vA~~lgiP~v 127 (189)
..|+++=.+...-.+ .|++.||+++
T Consensus 92 ~~~~~~~G~~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 92 GHCTIYVGISNPYLEQLAADAGVKLI 117 (287)
T ss_pred CCCEEEEecCCHHHHHHHHHCCCeEE
Confidence 777777666666555 8899999988
No 64
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=84.34 E-value=1.9 Score=34.58 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=28.0
Q ss_pred cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 14 PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 14 p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
|....|+-.-...+++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 444569999999999999999999999987643
No 65
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=84.09 E-value=4.4 Score=32.32 Aligned_cols=95 Identities=20% Similarity=0.305 Sum_probs=52.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEM 88 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 88 (189)
||+++.--..| .+|++.|.++|+ |++-++.+........ ......+.. .++
T Consensus 2 ~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~------~~~~~~v~~-------G~l---------- 52 (249)
T PF02571_consen 2 KILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKP------ELPGLEVRV-------GRL---------- 52 (249)
T ss_pred EEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhcc------ccCCceEEE-------CCC----------
Confidence 45555444334 468999999998 6655444433332211 001111111 111
Q ss_pred CCCCCHHHhhhhcCCCEEEeCCCcch-------HHHHHHHhCCCeEEEechh
Q 042879 89 TSQPDMPVNLQEHKPNCLVADMLFPW-------ATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 89 ~~~~~l~~ll~~~~~d~vI~D~~~~~-------~~~vA~~lgiP~v~f~~~~ 133 (189)
...+.+.+++++.++++|| |.-.+. +..+|+++|||++-|--..
T Consensus 53 g~~~~l~~~l~~~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~eRp~ 103 (249)
T PF02571_consen 53 GDEEGLAEFLRENGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFERPS 103 (249)
T ss_pred CCHHHHHHHHHhCCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEEcCC
Confidence 1124567788777888765 765554 3467889999988876543
No 66
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=83.85 E-value=1.8 Score=36.06 Aligned_cols=37 Identities=14% Similarity=0.386 Sum_probs=29.7
Q ss_pred ccEEEEecCCC-CcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 7 KLHIIFFPLMA-HGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 7 ~~hvl~~p~p~-~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
.++|+++..-. .||..+...|+++|.++|++|.++..
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d 41 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCD 41 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 44777777644 49999999999999999998666644
No 67
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=83.26 E-value=6.9 Score=36.43 Aligned_cols=111 Identities=17% Similarity=0.107 Sum_probs=55.8
Q ss_pred CcChHHHHHHHHH--------HhhCCC----eEEEEeCCcchHHHhhhccc--cccCCCceEEEEeeCCCCCC-CCCCCC
Q 042879 18 HGHMIPLVDMAKL--------FGSRGV----KTTVITTPANATLFSKAIPR--ANELGIEIDIKTIKFPSVEV-GLPEGS 82 (189)
Q Consensus 18 ~GH~~P~l~La~~--------La~~G~----~Vt~~t~~~~~~~~~~~~~~--~~~~~~~i~~~~lp~~~~~~-~~p~~~ 82 (189)
.|+..=.+++|++ |+++|| +|+++|-......-...... ......+.+++.+|+-+... .++ .+
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~-~~ 357 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILR-NW 357 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCCCcccccc-cc
Confidence 4677777888886 468899 77788864322110000000 00112467787787532110 011 00
Q ss_pred CcccC-CCCCC----CHH-Hhhhhc--CCCEEEeCCCcc-h-HHHHHHHhCCCeEEE
Q 042879 83 ENLNE-MTSQP----DMP-VNLQEH--KPNCLVADMLFP-W-ATDAAAKFGIPRLVF 129 (189)
Q Consensus 83 ~~~~~-~~~~~----~l~-~ll~~~--~~d~vI~D~~~~-~-~~~vA~~lgiP~v~f 129 (189)
-..+. .+..+ .+. .+.++. +||+|++-+... + +..+|+++|||.+..
T Consensus 358 i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 358 ISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 00011 01011 111 222232 699999987654 3 358889999996543
No 68
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=83.14 E-value=10 Score=30.07 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=55.2
Q ss_pred CCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHH
Q 042879 16 MAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMP 95 (189)
Q Consensus 16 p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~ 95 (189)
...|.-..+..|++.|.+.|++|.+++........... . ..++.+..++... +. .. ......+.
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~-----~~~i~v~~~~~~~---~~----~~---~~~~~~~~ 73 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEEL-E-----EAGVPVYCLGKRP---GR----PD---PGALLRLY 73 (365)
T ss_pred cCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHH-H-----hcCCeEEEEeccc---cc----cc---HHHHHHHH
Confidence 34689999999999999999999999875443221111 0 1246666554210 10 00 00012244
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHH-hCCCeEE
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAK-FGIPRLV 128 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~-lgiP~v~ 128 (189)
+++++.++|.|++..+... ....+.. .++|.+.
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~ 109 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAARLAGVPPVIW 109 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHHhcCCCcEEE
Confidence 5666668999988654432 2333333 4666654
No 69
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=82.96 E-value=7.1 Score=31.26 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHKP 103 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~~ 103 (189)
-.+|+++|.++|++|+..+........-.. . ....++ . +.+ . .+.+++++++.++
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~------~-g~~~v~-~------g~l----------~-~~~l~~~l~~~~i 66 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPI------H-QALTVH-T------GAL----------D-PQELREFLKRHSI 66 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccc------c-CCceEE-E------CCC----------C-HHHHHHHHHhcCC
Confidence 467899999999999987765433211100 0 011111 0 111 1 1336778887788
Q ss_pred CEEEeCCCcch-------HHHHHHHhCCCeEEEe
Q 042879 104 NCLVADMLFPW-------ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 104 d~vI~D~~~~~-------~~~vA~~lgiP~v~f~ 130 (189)
++|| |.-.+. +..+|+++|||++-|-
T Consensus 67 ~~VI-DAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 67 DILV-DATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred CEEE-EcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 8655 655543 3477899999999883
No 70
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=82.69 E-value=11 Score=24.66 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=44.7
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHKP 103 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~~ 103 (189)
++++++.|.+.|+++ +.|......++.. ++.+..+-. ...++ .+.+.+++++-++
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~~~~-----ki~~~---------~~~i~~~i~~g~i 56 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLREA---------GLPVKTLHP-----KVHGG---------ILAILDLIKNGEI 56 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHHC---------CCcceeccC-----CCCCC---------CHHHHHHhcCCCe
Confidence 568999999999887 3444444445432 233321100 01011 1224456666688
Q ss_pred CEEEeCCC---------cchHHHHHHHhCCCeE
Q 042879 104 NCLVADML---------FPWATDAAAKFGIPRL 127 (189)
Q Consensus 104 d~vI~D~~---------~~~~~~vA~~lgiP~v 127 (189)
|+||.-.. ..+....|.+.|||.+
T Consensus 57 d~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 57 DLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred EEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 88887432 1234577889999975
No 71
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=82.47 E-value=5.2 Score=32.41 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=54.9
Q ss_pred CCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHH
Q 042879 16 MAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMP 95 (189)
Q Consensus 16 p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~ 95 (189)
...|.-.-+..+++.|.++|++|++++............. ..++.+..++.. .. .... ....+.
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~---~~~~---~~~~~~ 73 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIE-----KLGGKIYYIPAR-----KK---NPLK---YFKKLY 73 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHH-----HcCCeEEEecCC-----Cc---cHHH---HHHHHH
Confidence 3458888999999999999999999987643321111110 012344333210 00 0000 011233
Q ss_pred HhhhhcCCCEEEeCCCc-ch-HHHHHHHhCCCeEEEe
Q 042879 96 VNLQEHKPNCLVADMLF-PW-ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~ 130 (189)
+++++.++|+|.+-... .+ ...+++.+++|.++++
T Consensus 74 ~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~ 110 (358)
T cd03812 74 KLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAH 110 (358)
T ss_pred HHHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEE
Confidence 45555689998775543 22 3355667889886543
No 72
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=81.38 E-value=19 Score=30.50 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=63.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEM 88 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~ 88 (189)
-+++.--||.|--.=+++++..++.+|.+|.+++.+.....+.....+......++.+ + .+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l--~---------~e-------- 144 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYL--L---------AE-------- 144 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEE--E---------cc--------
Confidence 4567777899999999999999999988999998876554443221110000001111 0 00
Q ss_pred CCCCCHHHhhhhcCCCEEEeCCCcch---------------------HHHHHHHhCCCeEEEe
Q 042879 89 TSQPDMPVNLQEHKPNCLVADMLFPW---------------------ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 89 ~~~~~l~~ll~~~~~d~vI~D~~~~~---------------------~~~vA~~lgiP~v~f~ 130 (189)
...+.+.+.+++.+++.||.|.+..- ...+|++.|++.+...
T Consensus 145 ~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 145 TNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred CcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 00123445555558999999986321 1256889999988764
No 73
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=81.04 E-value=2.3 Score=34.22 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=26.0
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.|+-.-+..+++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 58999999999999999999999987643
No 74
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=81.02 E-value=15 Score=25.00 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=53.4
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhh
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNL 98 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll 98 (189)
++-.=++++++.|.+.|+++ +.|+.....+... ++.+..+..+ .. ..+.+.+++
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~---------gi~~~~v~~~------~~---------~~~~i~~~i 63 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQEA---------GIPVEVVNKV------SE---------GRPNIVDLI 63 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHc---------CCeEEEEeec------CC---------CchhHHHHH
Confidence 34556889999999999887 3555555455432 3444433211 00 124466777
Q ss_pred hhcCCCEEEeCCC-------cchHHHHHHHhCCCeEE
Q 042879 99 QEHKPNCLVADML-------FPWATDAAAKFGIPRLV 128 (189)
Q Consensus 99 ~~~~~d~vI~D~~-------~~~~~~vA~~lgiP~v~ 128 (189)
++-++|+||.-.- ..+....|-++|||.+.
T Consensus 64 ~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 64 KNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 7778999987321 23566789999999983
No 75
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.82 E-value=2.6 Score=36.12 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=35.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
-|++=--||.|--.=++|++.+|+++| +|-+++.+....+++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 456666799999999999999999999 999999987766544
No 76
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=80.27 E-value=17 Score=27.99 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=66.8
Q ss_pred EEEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 9 HIIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 9 hvl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
.+-++.. ...|--.-+++-+++...+|-+|.++++....+.-.+.+. ++.++......
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~----Sr~G~~~~A~~----------------- 63 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVS----SRIGLSSEAVV----------------- 63 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceee----eccCCccccee-----------------
Confidence 4434433 4459999999999999999999999988754432111110 00111111110
Q ss_pred CCCCCCHHHhhhhc----CCCEEEeCCCcc------h-HHHHHHHhCCCeEEEe----------chhHHHHHHHHHHHhh
Q 042879 88 MTSQPDMPVNLQEH----KPNCLVADMLFP------W-ATDAAAKFGIPRLVFH----------GTSFLSLCATACLMLY 146 (189)
Q Consensus 88 ~~~~~~l~~ll~~~----~~d~vI~D~~~~------~-~~~vA~~lgiP~v~f~----------~~~a~~~~~~~~~~~~ 146 (189)
++....+.+.+.+. +.+||+.|-..+ | ...+|+++|||++.+- ..+...+++-..+-++
T Consensus 64 i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL 143 (201)
T COG1435 64 IPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKL 143 (201)
T ss_pred cCChHHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEeccccccccCCCccHHHHHHHHHHHHHH
Confidence 11112334444443 368999996332 3 3488999999998853 3445555555544443
No 77
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=79.93 E-value=17 Score=24.95 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhh
Q 042879 20 HMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQ 99 (189)
Q Consensus 20 H~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~ 99 (189)
.=.=+++++++|...|+++ +.|......++.. ++.+..+.. .+++ ..+.+.++++
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~---------Gi~~~~v~~------~~~~--------g~~~i~~~i~ 64 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA---------GIPVRAVSK------RHED--------GEPTVDAAIA 64 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc---------CCceEEEEe------cCCC--------CCcHHHHHHh
Confidence 3345789999999999877 4555555455432 344444321 1110 1244667777
Q ss_pred h-cCCCEEEe--CCCc--------chHHHHHHHhCCCeEEE
Q 042879 100 E-HKPNCLVA--DMLF--------PWATDAAAKFGIPRLVF 129 (189)
Q Consensus 100 ~-~~~d~vI~--D~~~--------~~~~~vA~~lgiP~v~f 129 (189)
+ -++|+||. |... .-....|-+.|||.+.-
T Consensus 65 ~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 65 EKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 7 68898877 4332 12246788999998753
No 78
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=79.48 E-value=10 Score=30.30 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHKP 103 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~~ 103 (189)
-..|+++|...+..+++.++.......... .+ . ..+ .|. + ..+.+++++++.++
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~~------~~-~---~~~------~G~---------l-~~e~l~~~l~e~~i 67 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAEQ------IG-P---VRV------GGF---------L-GAEGLAAFLREEGI 67 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchhc------cC-C---eee------cCc---------C-CHHHHHHHHHHcCC
Confidence 367888888888777776665433222111 00 0 111 011 1 13567888888777
Q ss_pred CEEEeCCCcch-------HHHHHHHhCCCeEEEec
Q 042879 104 NCLVADMLFPW-------ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 104 d~vI~D~~~~~-------~~~vA~~lgiP~v~f~~ 131 (189)
|+|| |.-.+. +..+|++.|||++.|--
T Consensus 68 ~llI-DATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 68 DLLI-DATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred CEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 7554 766554 35788999999998754
No 79
>PRK12342 hypothetical protein; Provisional
Probab=79.18 E-value=11 Score=30.18 Aligned_cols=99 Identities=8% Similarity=0.113 Sum_probs=54.6
Q ss_pred hHHH----HHHHHHHhhCCCeEEEEeCCcch--HH-H-hhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCC
Q 042879 21 MIPL----VDMAKLFGSRGVKTTVITTPANA--TL-F-SKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQP 92 (189)
Q Consensus 21 ~~P~----l~La~~La~~G~~Vt~~t~~~~~--~~-~-~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~ 92 (189)
+||+ ++.|-+|.++|.+||+++..... .. + +..+.. +-+ +-+.+. ++.+. +. +.+....
T Consensus 33 iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alam----GaD-~avli~----d~~~~-g~---D~~ata~ 99 (254)
T PRK12342 33 ISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSR----GPH-SLYLVQ----DAQLE-HA---LPLDTAK 99 (254)
T ss_pred CChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHc----CCC-EEEEEe----cCccC-CC---CHHHHHH
Confidence 5565 56667777679999999877543 22 2 333211 111 122221 11111 11 1011113
Q ss_pred CHHHhhhhcCCCEEEeCCCcc------hHHHHHHHhCCCeEEEech
Q 042879 93 DMPVNLQEHKPNCLVADMLFP------WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~ 132 (189)
.+.+.+++..+|+|++---.. -+..+|+.||+|.+.+-..
T Consensus 100 ~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 355667766899999854332 2569999999999887643
No 80
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=78.91 E-value=9.1 Score=29.00 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=50.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHH-HhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATL-FSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
.++-+-..+.|=++-..+|+++|.++ |++|.+-++...... ..+... ..+....+|. +.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~-----D~~------ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPL-----DFP------ 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE--------SSH------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCc-----cCH------
Confidence 45556667789999999999999986 888887766544333 332211 1233333442 111
Q ss_pred cCCCCCCCHHHhhhhcCCCEEEeCCCcchH--HHHHHHhCCCeEEEech
Q 042879 86 NEMTSQPDMPVNLQEHKPNCLVADMLFPWA--TDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~~~ 132 (189)
..++.+++.++|+++|.=---.|. ...|++.|||.+....-
T Consensus 85 ------~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 85 ------WAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ------HHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred ------HHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 236688888888865443333444 56788999999987653
No 81
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=77.68 E-value=12 Score=29.74 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=55.1
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
.+|+++.--+.| .+|++.|..+|+.|++.+...... .. .....+.. .+
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~---------~~~~~v~~-------G~---------- 50 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PA---------DLPGPVRV-------GG---------- 50 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cc---------cCCceEEE-------CC----------
Confidence 366666655555 468889988999888766554321 00 01111111 11
Q ss_pred CCCCCCHHHhhhhcCCCEEEeCCCcch-------HHHHHHHhCCCeEEEec
Q 042879 88 MTSQPDMPVNLQEHKPNCLVADMLFPW-------ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 88 ~~~~~~l~~ll~~~~~d~vI~D~~~~~-------~~~vA~~lgiP~v~f~~ 131 (189)
+...+.+++++++.++++|| |.-.+. +..+|+++|||++-|--
T Consensus 51 l~~~~~l~~~l~~~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 51 FGGAEGLAAYLREEGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred CCCHHHHHHHHHHCCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 11135577888887888754 766554 34778899999998874
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=77.54 E-value=3.2 Score=33.56 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.5
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.|+-.....|++.|.++||+|++++..
T Consensus 12 gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 12 GGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 588999999999999999999999754
No 83
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.79 E-value=4.9 Score=32.05 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=39.8
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA 53 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~ 53 (189)
..-++++-.||.|--.=...++++|..+|++|+|++++.....++..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34788999999888888999999999889999999998877666654
No 84
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.64 E-value=9 Score=29.28 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=39.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA 53 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~ 53 (189)
+.+|++.+.++..|-.-..=++..|..+|++|+++...-....+...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 56999999999999999999999999999999988876555555443
No 85
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=76.50 E-value=12 Score=29.94 Aligned_cols=100 Identities=8% Similarity=0.051 Sum_probs=55.2
Q ss_pred ChHHH----HHHHHHHhhC-C-CeEEEEeCCcch----HHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCC
Q 042879 20 HMIPL----VDMAKLFGSR-G-VKTTVITTPANA----TLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMT 89 (189)
Q Consensus 20 H~~P~----l~La~~La~~-G-~~Vt~~t~~~~~----~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~ 89 (189)
=+||. ++.|-+|.++ | .+||+++..... ..++..+.. |-+ +-+.+.. +.+. +. +...
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAm----GaD-~avli~d----~~~~-g~---D~~~ 99 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSR----GPD-ELIVVID----DQFE-QA---LPQQ 99 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHc----CCC-EEEEEec----Cccc-Cc---CHHH
Confidence 35665 5667777775 3 799999976543 224444321 111 1222211 1111 11 1111
Q ss_pred CCCCHHHhhhhcCCCEEEeCCCcc------hHHHHHHHhCCCeEEEech
Q 042879 90 SQPDMPVNLQEHKPNCLVADMLFP------WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 90 ~~~~l~~ll~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~ 132 (189)
....+.+.+++..+|+|++-.-.. -+..+|+.||+|.+.+-..
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 113355677776899999854332 2468999999999887654
No 86
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=76.18 E-value=9.4 Score=29.16 Aligned_cols=48 Identities=6% Similarity=-0.062 Sum_probs=41.0
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA 53 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~ 53 (189)
.+.+|++.+.++..|-.-..=++..|.++|++|+++...-....+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 356999999999999999999999999999999999887766655544
No 87
>PRK10307 putative glycosyl transferase; Provisional
Probab=75.96 E-value=5.4 Score=33.57 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCCeEEEEeCCc
Q 042879 24 LVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+|++.|.++||+|+++|...
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999763
No 88
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=75.24 E-value=5.4 Score=31.91 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=26.5
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
..|+..-...|++.|.++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 458999999999999999999999987654
No 89
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.65 E-value=23 Score=31.05 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=70.5
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhcccc----c--cCCCceEEEEeeCCCCCCCCCCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRA----N--ELGIEIDIKTIKFPSVEVGLPEG 81 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~----~--~~~~~i~~~~lp~~~~~~~~p~~ 81 (189)
.-+++.-.||-|--+=.++++...+.+|.++.+++.+.....+.....+. . .....+.+.... |..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~--------p~~ 335 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAY--------PES 335 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcc--------ccc
Confidence 36788888999999999999999999999999999988776654432110 0 000124443321 100
Q ss_pred CCcccCCCCCCCHHHhhhhcCCCEEEeCCCcch---------------HHHHHHHhCCCeEEEechh
Q 042879 82 SENLNEMTSQPDMPVNLQEHKPNCLVADMLFPW---------------ATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 82 ~~~~~~~~~~~~l~~ll~~~~~d~vI~D~~~~~---------------~~~vA~~lgiP~v~f~~~~ 133 (189)
. ..+. ....+.+.+++.+++.||.|.+..- ....+++.||..+....+.
T Consensus 336 ~-~~~~--~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~~~ 399 (484)
T TIGR02655 336 A-GLED--HLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTSD 399 (484)
T ss_pred C-ChHH--HHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeeccc
Confidence 0 0000 0123445555558999999997642 1234567777777665544
No 90
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=72.39 E-value=9 Score=30.63 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=23.3
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
|--.-..+|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 555778999999999999999999754
No 91
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=72.36 E-value=7.4 Score=32.18 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=25.7
Q ss_pred EEEEec-CCCC-cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFP-LMAH-GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p-~p~~-GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+|+++- .... |=-.-+..||++|+++||+|++++...
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 455543 3222 323456899999999999999999753
No 92
>PRK11823 DNA repair protein RadA; Provisional
Probab=72.25 E-value=43 Score=29.09 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=36.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
-+++.--||.|--.=+++++..++.+|.+|.+++++.....+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 5677788999999999999999998899999999887655443
No 93
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=72.00 E-value=7 Score=31.62 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=30.5
Q ss_pred EEEEecCC-C-CcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 9 HIIFFPLM-A-HGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 9 hvl~~p~p-~-~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
+|+++... + .|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56666543 3 58889999999999999999999987654
No 94
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=71.42 E-value=7.8 Score=30.51 Aligned_cols=99 Identities=17% Similarity=0.291 Sum_probs=55.1
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCce---EEEEeeCCCCCCCCCCCCCcccCCCCCCC
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEI---DIKTIKFPSVEVGLPEGSENLNEMTSQPD 93 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i---~~~~lp~~~~~~~~p~~~~~~~~~~~~~~ 93 (189)
..|+-.-+..|++.|.+.|++|++++........... .... ...... . ...........
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~------~-----~~~~~~~~~~~ 72 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELL-------PSNVKLIPVRVLK------L-----KSLRDLLAILR 72 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccccc-------ccchhhhceeeee------c-----ccccchhHHHH
Confidence 5688899999999999999999999876433211100 0000 000000 0 00000000123
Q ss_pred HHHhhhhcCCCEEEeCCC-cch-HHHHHHHhCCCeEEEechh
Q 042879 94 MPVNLQEHKPNCLVADML-FPW-ATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~-~~~-~~~vA~~lgiP~v~f~~~~ 133 (189)
+++++++.++|+|++... ..+ ...++...++|.+......
T Consensus 73 ~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 114 (353)
T cd03811 73 LRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNS 114 (353)
T ss_pred HHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCc
Confidence 456666668999988876 332 2344445578887655444
No 95
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=70.94 E-value=26 Score=33.89 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=22.6
Q ss_pred cChHHHHHHHHHHhhCC--CeEEEEeCCc
Q 042879 19 GHMIPLVDMAKLFGSRG--VKTTVITTPA 45 (189)
Q Consensus 19 GH~~P~l~La~~La~~G--~~Vt~~t~~~ 45 (189)
|+..=.++||++|+++| |+|.++|-..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~ 224 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQV 224 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 46667799999999998 8999999654
No 96
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=70.89 E-value=23 Score=30.38 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=51.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhh-hccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSK-AIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~-~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
+++++..++. .+.+++.|.+-|.+|..+.+......... ..... ...++ .. ..
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l--~~~~~------------~v-------~~ 335 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWL--SALGV------------EV-------RY 335 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHH--HhcCC------------cc-------cc
Confidence 5666665543 55588889999999999887632111111 10000 00000 00 00
Q ss_pred CCCCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 88 MTSQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 88 ~~~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
....+...+.+++.++|++|.. +-+..+|+++|||.+.+.
T Consensus 336 ~~~~~~~~~~~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 336 RKSLEDDIAAVEEYRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred CCCHHHHHHHHhhcCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 0000112244556699999977 346789999999996643
No 97
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.77 E-value=8.4 Score=31.02 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=26.3
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
..|.-.-..+|++.|..+||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 558888889999999999999999988654
No 98
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=70.22 E-value=15 Score=29.31 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCC-CCCCCCCCCcccCCCCCCCHHHhhhhcC
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSV-EVGLPEGSENLNEMTSQPDMPVNLQEHK 102 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-~~~~p~~~~~~~~~~~~~~l~~ll~~~~ 102 (189)
+..|++.|. .+.+|+++.+..+.+-....+. ....+++..+..... -.|-|.++- .-.+..++++.+
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~s~slT----l~~Plr~~~~~~~~~av~GTPaDCV-------~lal~~l~~~~~ 83 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGASHSLT----LHEPLRVRQVDNGAYAVNGTPADCV-------ILGLNELLKEPR 83 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCcccccccc----cccCceeeEeccceEEecCChHHHH-------HHHHHHhccCCC
Confidence 345666666 8999999998876543322211 011234333311000 012121110 012335554546
Q ss_pred CCEEEeCCCcc----------h---HHHHHHHhCCCeEEEech
Q 042879 103 PNCLVADMLFP----------W---ATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 103 ~d~vI~D~~~~----------~---~~~vA~~lgiP~v~f~~~ 132 (189)
||+||+-.... . +..=|.-+|||.+.++-.
T Consensus 84 pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 84 PDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred CCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 89998855432 2 223356789999998765
No 99
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=69.80 E-value=14 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=19.3
Q ss_pred CCCEEEeCCCc-c-----hHHHHHHHhCCCeEEEechh
Q 042879 102 KPNCLVADMLF-P-----WATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 102 ~~d~vI~D~~~-~-----~~~~vA~~lgiP~v~f~~~~ 133 (189)
..|+|..|.-. . ....+|+++++|+|+...+.
T Consensus 183 Gad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 183 GADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp E-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GG
T ss_pred eeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccc
Confidence 56777777632 1 23578899999999986553
No 100
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.77 E-value=8.4 Score=28.50 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=24.5
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999998
No 101
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=69.67 E-value=30 Score=23.74 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhc
Q 042879 22 IPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEH 101 (189)
Q Consensus 22 ~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~ 101 (189)
.=+.++++.|.+.|+++ +.|......+... ++....+-.. . +.... ..+.+.+++++-
T Consensus 13 ~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~---------gi~~~~v~~~--~-~~~~~--------~~~~i~~~i~~~ 70 (116)
T cd01423 13 PELLPTAQKLSKLGYKL--YATEGTADFLLEN---------GIPVTPVAWP--S-EEPQN--------DKPSLRELLAEG 70 (116)
T ss_pred hhHHHHHHHHHHCCCEE--EEccHHHHHHHHc---------CCCceEeeec--c-CCCCC--------CchhHHHHHHcC
Confidence 34789999999999877 4555555555432 2322222100 0 10000 014466777777
Q ss_pred CCCEEEeCCC---------cchHHHHHHHhCCCeE
Q 042879 102 KPNCLVADML---------FPWATDAAAKFGIPRL 127 (189)
Q Consensus 102 ~~d~vI~D~~---------~~~~~~vA~~lgiP~v 127 (189)
++|+||.-.- ..+....|-++|||.+
T Consensus 71 ~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 71 KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred CceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 8999987322 2345678889999996
No 102
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=69.60 E-value=5.5 Score=31.24 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=21.1
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
-|+..|.++|.+|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367899999999999999999999874
No 103
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=69.50 E-value=28 Score=28.25 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=22.0
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
.-|.|..|.-.. -...+|+++|||+|+..++.-+
T Consensus 184 GAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~ 223 (275)
T PRK08335 184 GADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFKF 223 (275)
T ss_pred CccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECcccee
Confidence 456666665321 2346789999999997665544
No 104
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=69.31 E-value=17 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=40.7
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA 53 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~ 53 (189)
.+.+|++...++..|-.-..=++..|..+|++|+++...-....+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 457999999999999999999999999999999999987666555443
No 105
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=69.20 E-value=50 Score=26.32 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCCc-chHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCccc-CCC-CCCCHHHhh
Q 042879 22 IPLVDMAKLFGSRGVKTTVITTPA-NATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLN-EMT-SQPDMPVNL 98 (189)
Q Consensus 22 ~P~l~La~~La~~G~~Vt~~t~~~-~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~-~~~-~~~~l~~ll 98 (189)
.-+-+.++.|.+.+..-.|+|+.+ +...+.. .. ..+.++-+..+|.+...-+++.. +... .-+ +.+.-++++
T Consensus 116 ~~~~eA~~~l~~~~~~~iflttGsk~L~~f~~-~~---~~~~r~~~RvLp~~~~~~g~~~~-~iia~~GPfs~e~n~al~ 190 (249)
T PF02571_consen 116 DSYEEAAELLKELGGGRIFLTTGSKNLPPFVP-AP---LPGERLFARVLPTPESALGFPPK-NIIAMQGPFSKELNRALF 190 (249)
T ss_pred CCHHHHHHHHhhcCCCCEEEeCchhhHHHHhh-cc---cCCCEEEEEECCCccccCCCChh-hEEEEeCCCCHHHHHHHH
Confidence 346677788877774455555554 3333322 10 11223444556654332233221 0000 001 123344788
Q ss_pred hhcCCCEEEeCCCcc---hH-HHHHHHhCCCeEEEe
Q 042879 99 QEHKPNCLVADMLFP---WA-TDAAAKFGIPRLVFH 130 (189)
Q Consensus 99 ~~~~~d~vI~D~~~~---~~-~~vA~~lgiP~v~f~ 130 (189)
++.+.|+||+=---. .. ...|+++|||.++.-
T Consensus 191 ~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 191 RQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 888999999854322 12 478999999998753
No 106
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=68.72 E-value=26 Score=28.82 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=23.0
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
..|+|..|.-.. -...+|+++|+|+|+...+.-+
T Consensus 195 GAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K~ 234 (310)
T PRK08535 195 GADAITANGAVINKIGTSQIALAAHEARVPFMVAAETYKF 234 (310)
T ss_pred CccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEeccccee
Confidence 566777775322 2346789999999998766544
No 107
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.36 E-value=17 Score=25.26 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=36.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
||++...++..|-.=..=++..|..+|++|..+......+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~ 43 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIV 43 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 5788889999999999999999999999999998876554443
No 108
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.07 E-value=9.5 Score=30.84 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=23.5
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.|=-.-..+|++.|.++||+|++++....
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 34456678999999999999999987643
No 109
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=67.96 E-value=24 Score=23.97 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=35.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
++++...+..-|-.-+.-++..|.++||+|.++........+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~ 44 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELV 44 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHH
Confidence 6888889999999999999999999999999997665444443
No 110
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=66.89 E-value=42 Score=29.21 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=35.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
-+++.--||.|--.=+++++..++.+|.+|.+++.+.....+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 567777899999999999999999999899999987665444
No 111
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=66.27 E-value=47 Score=26.64 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCHHHhhhhcCCCEEEeCCCcch-----HHHHHHHhCCCeEEEe
Q 042879 92 PDMPVNLQEHKPNCLVADMLFPW-----ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~~-----~~~vA~~lgiP~v~f~ 130 (189)
+.-+.++++++.|+||+=-.-.. =...|+++|||++..-
T Consensus 186 ~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 186 EDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 44457888889999998644322 2488999999998764
No 112
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=66.22 E-value=10 Score=26.73 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=29.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
||++.-..+ ++..-..++.++|.++|++|+++.++.-.+.+.
T Consensus 2 ~i~l~vtGs-~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~ 43 (129)
T PF02441_consen 2 RILLGVTGS-IAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVT 43 (129)
T ss_dssp EEEEEE-SS-GGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSH
T ss_pred EEEEEEECH-HHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhh
Confidence 555555544 444449999999999999999999886544333
No 113
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=66.10 E-value=35 Score=27.37 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCeEEEec
Q 042879 115 ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 115 ~~~vA~~lgiP~v~f~~ 131 (189)
....|+++|+|+++...
T Consensus 177 ~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 177 LALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHHcCCCEEEEee
Confidence 34678999999998544
No 114
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=66.04 E-value=11 Score=30.63 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCCHHHhhhhc-----CCCEEEeCCCcch-----HHHHHHHhCCCeEEEechh
Q 042879 91 QPDMPVNLQEH-----KPNCLVADMLFPW-----ATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 91 ~~~l~~ll~~~-----~~d~vI~D~~~~~-----~~~vA~~lgiP~v~f~~~~ 133 (189)
...+|+++|+. ++-+||.|.|.-- ..++|.+.+||+|++.-..
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 34566666553 7899999999752 4577889999999987654
No 115
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=65.96 E-value=51 Score=26.49 Aligned_cols=114 Identities=24% Similarity=0.270 Sum_probs=57.7
Q ss_pred CCccEEEEecCCCCcChHH-HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCC
Q 042879 5 IRKLHIIFFPLMAHGHMIP-LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSE 83 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P-~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~ 83 (189)
.++++||+.- --|-..| +..|++.|.+.| +|+++.+....+.....+. .+..+++..+... .+.. .+.
T Consensus 3 ~~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait----~~~pl~~~~~~~~---~~~~-~y~ 71 (257)
T PRK13932 3 DKKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMT----LGVPLRIKEYQKN---NRFF-GYT 71 (257)
T ss_pred CCCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCccccc----CCCCeEEEEEccC---CCce-EEE
Confidence 3456888766 3444444 456778887778 7998887765433222211 1234565554210 0100 000
Q ss_pred cccCCCCCCCHH----HhhhhcCCCEEEeCCC----------cch---HHHHHHHhCCCeEEEech
Q 042879 84 NLNEMTSQPDMP----VNLQEHKPNCLVADML----------FPW---ATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 84 ~~~~~~~~~~l~----~ll~~~~~d~vI~D~~----------~~~---~~~vA~~lgiP~v~f~~~ 132 (189)
..-.+ .+-++ .++. .+||+||+-.. ... +..-|.-+|||.+.++-.
T Consensus 72 -v~GTP-aDCV~lal~~~~~-~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 72 -VSGTP-VDCIKVALSHILP-EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred -EcCcH-HHHHHHHHHhhcC-CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 00000 11122 2222 26899887543 222 334456789999999863
No 116
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=65.15 E-value=31 Score=25.89 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCCEEEeCCCcchHHHHHHHh-CCCeEEEe
Q 042879 102 KPNCLVADMLFPWATDAAAKF-GIPRLVFH 130 (189)
Q Consensus 102 ~~d~vI~D~~~~~~~~vA~~l-giP~v~f~ 130 (189)
.||+||.-.-+..++-+-+.+ ++|.+.|.
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 689999999888888888988 89988764
No 117
>PRK00654 glgA glycogen synthase; Provisional
Probab=64.77 E-value=12 Score=32.36 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
|.-.-.-.|+++|+++||+|++++..
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 45566688999999999999999965
No 118
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.69 E-value=41 Score=28.51 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=45.1
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCC
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPS 73 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~ 73 (189)
.++.|+.++-..-.||---|--=|.-|+..|++|+++.-....+ ....+ .+++|+++.++.++
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p-~e~l~-----~hprI~ih~m~~l~ 72 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIP-LEELL-----NHPRIRIHGMPNLP 72 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCC-hHHHh-----cCCceEEEeCCCCc
Confidence 34567777777778999888888999999999999987654321 11111 24789999987543
No 119
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=64.65 E-value=14 Score=29.12 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=56.1
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHh
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVN 97 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~l 97 (189)
.|+-.-+..|++.|.+.||+|++++............ .......... ..... ...........+..+
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~ 80 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-------GGIVVVRPPP----LLRVR--RLLLLLLLALRLRRL 80 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-------cCcceecCCc----ccccc--hhHHHHHHHHHHHHH
Confidence 6899999999999999999999999864332111000 0000000000 00000 000000001123344
Q ss_pred hhhcCCCEEEeCCCcchHH--HHHHHhCCCeEEEechh
Q 042879 98 LQEHKPNCLVADMLFPWAT--DAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~~~--~vA~~lgiP~v~f~~~~ 133 (189)
+++.++|.|+......+.. ..+...++|.+...-..
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 118 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGL 118 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccc
Confidence 5555899988887665443 57788899988765543
No 120
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=64.42 E-value=61 Score=27.90 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=26.8
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
.+.+.+++.++|++|... +...+|+++|||.+.+
T Consensus 368 e~~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~ 401 (435)
T cd01974 368 HLRSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEe
Confidence 355667777899999876 4678999999998754
No 121
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=64.40 E-value=8.3 Score=32.21 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCC------
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTS------ 90 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~------ 90 (189)
..|--.-..+|+++|+++||+|+++++......-... ....++++..++..... +.. ...+..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~-~~~-----~~~~~~~~~~~~ 87 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVV-----EVAPGVRVRNVVAGPYE-GLD-----KEDLPTQLCAFT 87 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCcc-----ccCCCcEEEEecCCCcc-cCC-----HHHHHHHHHHHH
Confidence 3466678899999999999999999975431110000 01135676666421100 000 000000
Q ss_pred CCCHHHhhhhc--CCCEEEeCCCc-c-hHHHHHHHhCCCeEEEech
Q 042879 91 QPDMPVNLQEH--KPNCLVADMLF-P-WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 91 ~~~l~~ll~~~--~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f~~~ 132 (189)
...++.+++.. ++|+|-+-.+. . ++..+++.+++|.+..+-.
T Consensus 88 ~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~ 133 (405)
T TIGR03449 88 GGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHT 133 (405)
T ss_pred HHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccc
Confidence 01122333322 68988665432 2 2346677889998875543
No 122
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=64.08 E-value=58 Score=26.68 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=55.7
Q ss_pred EecCCCC-cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCC
Q 042879 12 FFPLMAH-GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTS 90 (189)
Q Consensus 12 ~~p~p~~-GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~ 90 (189)
+++.... |--+-++.|++.|.++|+++++++..... ....... ..+++++.++.. .. ..+..
T Consensus 7 ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~~-----~~~i~~~~~~~~----~~-------~~~~~ 69 (374)
T TIGR03088 7 VVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRIQ-----RPDVAFYALHKQ----PG-------KDVAV 69 (374)
T ss_pred EeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHHH-----hcCceEEEeCCC----CC-------CChHH
Confidence 3444444 55588999999999999999888753322 1221110 124666666421 00 00111
Q ss_pred CCCHHHhhhhcCCCEEEeCCCcc-hHHHHHHHhCCCeEE
Q 042879 91 QPDMPVNLQEHKPNCLVADMLFP-WATDAAAKFGIPRLV 128 (189)
Q Consensus 91 ~~~l~~ll~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~ 128 (189)
...+.+++++.++|+|-+-.... ++..++...++|..+
T Consensus 70 ~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 70 YPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred HHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 12345666667899887654322 234556778888633
No 123
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=63.01 E-value=39 Score=27.69 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=23.0
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFLS 136 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~~ 136 (189)
..|.|..|.-.. -...+|+++++|.|+...+.-+.
T Consensus 190 Gad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~ 230 (301)
T TIGR00511 190 GADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFH 230 (301)
T ss_pred CccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceec
Confidence 456666665321 23467899999999987665443
No 124
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=62.04 E-value=75 Score=25.24 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCC----HHHhhh
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPD----MPVNLQ 99 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~----l~~ll~ 99 (189)
+..|++.|.+.| +|+++.+....+.....+. ....+++..++.. ++. ..+ ..+-.+ .+- +..++.
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait----~~~pl~~~~~~~~---~~~-~~~-~v~GTP-aDcv~~gl~~l~~ 84 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQRSGTGHSLT----LFEPLRVGQVKVK---NGA-HIY-AVDGTP-TDCVILGINELMP 84 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCccccccCcC----CCCCeEEEEeccC---CCc-cEE-EEcCcH-HHHHHHHHHHhcc
Confidence 456788888778 8999988766543322211 1234566555310 010 000 000001 011 122222
Q ss_pred hcCCCEEEeCCCc----------ch---HHHHHHHhCCCeEEEec
Q 042879 100 EHKPNCLVADMLF----------PW---ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 100 ~~~~d~vI~D~~~----------~~---~~~vA~~lgiP~v~f~~ 131 (189)
.+||+||+-... .. +..-|.-+|||.+.++-
T Consensus 85 -~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 85 -EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred -CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 268888875432 22 23445678999999886
No 125
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=61.76 E-value=19 Score=23.08 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=27.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
.-++++......|..-.-++|+.|+++|+.|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35555555667999999999999999999887653
No 126
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=61.37 E-value=70 Score=27.52 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=28.2
Q ss_pred CCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 92 PDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
..+.+++++.++|++|.+.. ...+|+++|||.+..
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 34567777779999999874 678999999998754
No 127
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.07 E-value=9.7 Score=32.59 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=26.0
Q ss_pred EEEEecCC-C--CcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLM-A--HGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p-~--~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
-+.+=|.. . -||+.|++.|. +|...||+|+++...
T Consensus 36 Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 36 YIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred EEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 44555554 2 29999999885 678899999998765
No 128
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=60.44 E-value=53 Score=28.00 Aligned_cols=32 Identities=34% Similarity=0.284 Sum_probs=25.5
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLV 128 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 128 (189)
+.+.+++.++|++|... +...+|+++|||.+.
T Consensus 348 ~~~~i~~~~pDl~ig~s---~~~~~a~~~gip~~~ 379 (410)
T cd01968 348 LKKLLKEKKADLLVAGG---KERYLALKLGIPFCD 379 (410)
T ss_pred HHHHHhhcCCCEEEECC---cchhhHHhcCCCEEE
Confidence 45667777899999884 456899999999874
No 129
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=58.48 E-value=86 Score=25.13 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
+..|++.|. .+++|+++.+....+
T Consensus 16 i~aL~~~l~-~~~~V~VvAP~~~qS 39 (253)
T PRK13935 16 IIILAEYLS-EKHEVFVVAPDKERS 39 (253)
T ss_pred HHHHHHHHH-hCCcEEEEccCCCCc
Confidence 456777775 457999998876554
No 130
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.87 E-value=67 Score=27.72 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=26.3
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeE
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRL 127 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 127 (189)
.+.+++++.++|+||... +...+|+++|||.+
T Consensus 364 ~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~i 395 (432)
T TIGR01285 364 DLEDLACAAGADLLITNS---HGRALAQRLALPLV 395 (432)
T ss_pred HHHHHHhhcCCCEEEECc---chHHHHHHcCCCEE
Confidence 456777777899999876 46889999999987
No 131
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=57.51 E-value=13 Score=28.25 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 14 PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 14 p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.-.+.|.+ -..||+.+..+|++||++..+.
T Consensus 24 tN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 24 TNRSSGKM--GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EES--SHH--HHHHHHHHHHTT-EEEEEE-TT
T ss_pred cCCCcCHH--HHHHHHHHHHCCCEEEEEecCc
Confidence 33344443 3578999999999999999874
No 132
>PLN02275 transferase, transferring glycosyl groups
Probab=57.17 E-value=1.1e+02 Score=25.35 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=37.6
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCC-eEEEEeCCcchHHHhhhccccccCCCceEEEEeeC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGV-KTTVITTPANATLFSKAIPRANELGIEIDIKTIKF 71 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~-~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 71 (189)
.+.||++. +-.|.---|..++++|+++|+ +||+++....... ... ....+++++.++.
T Consensus 5 ~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~-~~~-----~~~~~v~v~r~~~ 63 (371)
T PLN02275 5 GRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPI-PAL-----LNHPSIHIHLMVQ 63 (371)
T ss_pred cEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCC-HHH-----hcCCcEEEEECCC
Confidence 35566666 567788888999999999875 7999976433211 111 0123578877753
No 133
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=56.28 E-value=28 Score=28.78 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=35.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
...|.+--.||.|--.-.-.|.++|..+||+|-++..+...
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 44777888899999999999999999999999998766443
No 134
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=55.45 E-value=45 Score=26.57 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=31.2
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEechhHHHH
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFHGTSFLSL 137 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~~~ 137 (189)
+.+++.++.||+++..... +..+|++.|++.+.+-+.+...+
T Consensus 211 ~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~ 254 (266)
T cd01018 211 DLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWE 254 (266)
T ss_pred HHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHH
Confidence 4445558999999987653 46899999999988876654333
No 135
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=55.36 E-value=13 Score=32.02 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 22 IPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 22 ~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.-+-.|+++|+++||+|++++...
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 455779999999999999999653
No 136
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=55.07 E-value=20 Score=27.61 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=27.2
Q ss_pred CCCEEEeCCCcchHHHHHHHhCCCeEEEechhH
Q 042879 102 KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 102 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 134 (189)
.+.+||+|----.+.+-|++.|||.+++..-..
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~ 61 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRKEF 61 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEeccccC
Confidence 478999998766789999999999988776443
No 137
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.81 E-value=40 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=35.4
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
++++|++.+...-||=.=.--+++.|++.|++|........
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~t 51 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQT 51 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCC
Confidence 68899999988779999999999999999999988765543
No 138
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=54.45 E-value=59 Score=27.15 Aligned_cols=32 Identities=22% Similarity=0.096 Sum_probs=20.9
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechh
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~ 133 (189)
..|.|..|.-.. -...+|+++|||+|+..+++
T Consensus 222 GAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~ 259 (329)
T PRK06371 222 GADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGS 259 (329)
T ss_pred CccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecccc
Confidence 445555555221 23467899999999987753
No 139
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=52.91 E-value=12 Score=29.49 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 21 MIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 21 ~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
-.-.-.|+|+|+++||+|+++++..
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3556789999999999999999864
No 140
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=52.81 E-value=22 Score=27.03 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=29.0
Q ss_pred cChHHH-HHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeC
Q 042879 19 GHMIPL-VDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKF 71 (189)
Q Consensus 19 GH~~P~-l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 71 (189)
|=+-.+ -+|+.+|+++|++||+.........-.. .-.+++...+|.
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~~ 63 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIPA 63 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeCC
Confidence 445443 4589999999999999987544321111 113577777764
No 141
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=52.27 E-value=45 Score=26.34 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=40.6
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA 53 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~ 53 (189)
..-+++.-.||.|+-+=.++++.+.+++|..|-++++......+...
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 34788888999999999999999999999999999998876655443
No 142
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=51.13 E-value=54 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=22.3
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
..|.|..|.-.. -...+|+++|+|+|+...+.-+
T Consensus 204 GAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~ 243 (303)
T TIGR00524 204 GADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPLSTF 243 (303)
T ss_pred cccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecccccc
Confidence 455666665221 2346789999999998766554
No 143
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=50.84 E-value=27 Score=29.98 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=25.9
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
+++++++.+||++|.+. +...+|+++|+|.+.+.
T Consensus 362 ~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 362 VGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 44556666899999887 46678999999998763
No 144
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=50.24 E-value=80 Score=22.95 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcC-
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHK- 102 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~- 102 (189)
+.++-+.|.++|..+.++|...+......... -...+....-. +... ..-+..+.+...+++..
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~----l~~~f~~~~~~-----~~~~------~~kp~p~~~~~~~~~~~~ 156 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNAPTVLEKLG----LIDYFDAIVDP-----AEIK------KGKPDPEIFLAAAEGLGV 156 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccHHHHHHhcC----cHhhCcEEEeh-----hhcC------CCCCChHHHHHHHHHcCC
Confidence 46677888889999999986544322211100 00012211110 0000 01111233455555553
Q ss_pred -C--CEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 103 -P--NCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 103 -~--d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
+ .++|-|. .+-...|++.|++.+..
T Consensus 157 ~~~~~v~vgD~--~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 157 SPSECIGIEDA--QAGIEAIKAAGMFAVGV 184 (185)
T ss_pred CHHHeEEEecC--HHHHHHHHHcCCEEEec
Confidence 2 3567776 46788899999988753
No 145
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=50.18 E-value=84 Score=26.56 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=14.9
Q ss_pred HHHHHHhCCCeEEEechhH
Q 042879 116 TDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 116 ~~vA~~lgiP~v~f~~~~a 134 (189)
..+|+++|||+|+..+.+-
T Consensus 265 A~~Ak~~~vPfyV~Ap~~t 283 (356)
T PRK08334 265 AVLAKEHGIPFFTVAPLST 283 (356)
T ss_pred HHHHHHhCCCEEEEcccCc
Confidence 4678999999999875443
No 146
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=50.00 E-value=68 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=22.4
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
.-|.|..|.... -...+|+++|+|+|+..++.-+
T Consensus 232 GAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kf 271 (331)
T TIGR00512 232 GADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTI 271 (331)
T ss_pred cccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecccccc
Confidence 455565555321 2347789999999998776554
No 147
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=49.62 E-value=29 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCc
Q 042879 23 PLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.-+++|..|+..|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45799999999999999998654
No 148
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.34 E-value=56 Score=27.23 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHhhCCCeEEEEeCCcch-HHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCccc-CCC----CCCC
Q 042879 20 HMIPLVDMAKLFGSRGVKTTVITTPANA-TLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLN-EMT----SQPD 93 (189)
Q Consensus 20 H~~P~l~La~~La~~G~~Vt~~t~~~~~-~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~-~~~----~~~~ 93 (189)
|+--+-.+-+.|..+||+|-+-+-.... ..+-.. .++.+..+-- .+ ...+. .+- ..-.
T Consensus 12 hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~--------ygf~~~~Igk----~g----~~tl~~Kl~~~~eR~~~ 75 (346)
T COG1817 12 HVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL--------YGFPYKSIGK----HG----GVTLKEKLLESAERVYK 75 (346)
T ss_pred hhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH--------hCCCeEeecc----cC----CccHHHHHHHHHHHHHH
Confidence 4555788999999999998776644322 122211 1344443310 11 00111 100 0112
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHH
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
+.+++.+.++|+.+. -....+..+|--+|+|.+.|.-.--+
T Consensus 76 L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 76 LSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 335555668999998 66778899999999999999865543
No 149
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=49.18 E-value=32 Score=27.16 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
..|+-.-+..+++.|.+.|++|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4788889999999999999999999986543
No 150
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=49.09 E-value=24 Score=21.79 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.1
Q ss_pred HHHHHHHhhCCCeEEEEeCCc
Q 042879 25 VDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~ 45 (189)
+..|..|+++|++|+++-...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567889999999999996543
No 151
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.61 E-value=61 Score=28.11 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=27.1
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
.+.+++++.++|++|.. .+...+|+++|||.+.+.
T Consensus 386 e~~~~i~~~~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 386 ELLKLLLEYKADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred HHHHHHhhcCCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 45567777799999976 456788999999988653
No 152
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.36 E-value=42 Score=25.57 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
.|+++-..|.|--.-...||.++..+|.+|.+++.+.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 467777789999999999999999999999999988653
No 153
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=48.25 E-value=87 Score=26.10 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCC-eEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGV-KTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~-~Vt~~t~~ 44 (189)
+.+|+++-.-+-| -.+++.|+..|+ ++|++-..
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 4689998876665 568899999998 78887554
No 154
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=48.11 E-value=53 Score=26.44 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=34.3
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
..++++..+|.|--.-...||..|+.+|.+|.++..+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 466777888999999999999999999999999998754
No 155
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=47.78 E-value=34 Score=28.26 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=58.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHHhhhccccccCCCceEE-EEeeCCCCCCCCCCCCCccc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLFSKAIPRANELGIEIDI-KTIKFPSVEVGLPEGSENLN 86 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~~p~~~~~~~ 86 (189)
+|+++. ....++.=+..+.++|.++ ++++.++.|............ . -+|.. +.+.. .+ . +.....
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-~----~~i~~~~~~~~----~~-~-~~~~~~ 69 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-L----FHLPPDYDLNI----MS-P-GQTLGE 69 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-h----cCCCCCeeeec----CC-C-CCCHHH
Confidence 444443 3567888889999999886 677777776654322222110 0 11211 11110 01 1 100001
Q ss_pred CCC-CCCCHHHhhhhcCCCEEEeC--CCcc-hHHHHHHHhCCCeEEE
Q 042879 87 EMT-SQPDMPVNLQEHKPNCLVAD--MLFP-WATDAAAKFGIPRLVF 129 (189)
Q Consensus 87 ~~~-~~~~l~~ll~~~~~d~vI~D--~~~~-~~~~vA~~lgiP~v~f 129 (189)
... ....+.+++++.+||+|++- .+.. ++..+|..+|||++..
T Consensus 70 ~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 70 ITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 110 01335577777799998774 4433 3567889999999865
No 156
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=47.61 E-value=40 Score=30.56 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=24.1
Q ss_pred hcCCCEEEe-CC--CcchHHHHHHHhCC--CeEEEechhH
Q 042879 100 EHKPNCLVA-DM--LFPWATDAAAKFGI--PRLVFHGTSF 134 (189)
Q Consensus 100 ~~~~d~vI~-D~--~~~~~~~vA~~lgi--P~v~f~~~~a 134 (189)
+.+||++|. |+ |......-+++.|+ |.+.|.+-..
T Consensus 308 ~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqV 347 (608)
T PRK01021 308 KTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSI 347 (608)
T ss_pred hcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc
Confidence 348998654 86 55556677889996 9877765443
No 157
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=47.33 E-value=20 Score=30.91 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
|=-.-+-.|+++|+++||+|.+++...
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 334556789999999999999999754
No 158
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=47.29 E-value=33 Score=24.16 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEEechh
Q 042879 92 PDMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~ 133 (189)
+.++++++...|.+||++.+.. +..++|++.|+|.....-.+
T Consensus 72 ~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 72 ERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp CHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS-H
T ss_pred HHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcH
Confidence 3455555554788899998864 55799999999988765443
No 159
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=47.27 E-value=26 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=28.8
Q ss_pred EEEEecCCCCcChHH-HHHHHHHHhhCCCeEEEEeCCcch
Q 042879 9 HIIFFPLMAHGHMIP-LVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~p~p~~GH~~P-~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
+|++-= .|.+...- ..+|+++|.++|++|+++.|..-.
T Consensus 7 ~IllgV-TGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 7 RIGFGL-TGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred EEEEEE-cCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 554433 35666666 699999999999999999987644
No 160
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=47.15 E-value=57 Score=22.53 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=32.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
||++..-+|.|--.....+++.|+++|.+|-++.+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999988775
No 161
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=46.89 E-value=71 Score=23.22 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=34.0
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
+++.-.||.|--.....|++.++++|.+|.++..+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 567788999999999999999999999999999876543
No 162
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=46.72 E-value=2.6 Score=22.74 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=15.8
Q ss_pred ecCCCCcChHHHHHHHHHHhhCC
Q 042879 13 FPLMAHGHMIPLVDMAKLFGSRG 35 (189)
Q Consensus 13 ~p~p~~GH~~P~l~La~~La~~G 35 (189)
=.|||||-+||-.++-.-|-+.|
T Consensus 16 PTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CcCCCCCCCCccccccccCCCCC
Confidence 35789999998777655444444
No 163
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.05 E-value=1.2e+02 Score=22.41 Aligned_cols=95 Identities=9% Similarity=0.162 Sum_probs=54.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcch-HHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcC
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANA-TLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHK 102 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~-~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~ 102 (189)
+..|.+....+|.+|.++.+.... ..+...+.. ..++++++-... +.-+.. ..+.+.+.|++.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~---~yP~l~ivg~~~-----g~f~~~-------~~~~i~~~I~~~~ 101 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRR---RYPGLRIVGYHH-----GYFDEE-------EEEAIINRINASG 101 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH---HCCCeEEEEecC-----CCCChh-------hHHHHHHHHHHcC
Confidence 445666666688999999876432 222222221 224677764421 110000 0233445566669
Q ss_pred CCEEEeCCCcc----hHHHHHHHhCCCeEEEechhH
Q 042879 103 PNCLVADMLFP----WATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 103 ~d~vI~D~~~~----~~~~vA~~lgiP~v~f~~~~a 134 (189)
+|+|++-+-++ |.....++++.+ +.+...++
T Consensus 102 pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 102 PDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 99999988776 777888888888 44444433
No 164
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=45.97 E-value=42 Score=24.62 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCHHHhhhhcCCCEEEeCCCcchHH--H-H--HHHh-CCCeEEEechh
Q 042879 92 PDMPVNLQEHKPNCLVADMLFPWAT--D-A--AAKF-GIPRLVFHGTS 133 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~~~~--~-v--A~~l-giP~v~f~~~~ 133 (189)
+.+.++|++.+||+||+=..+.... . + ...+ ++|.+...|=.
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 3466777788999999998764322 2 2 2234 57877766643
No 165
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=45.71 E-value=37 Score=30.09 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
++++|++.+||+||.+. |...+|+++|||.+..+
T Consensus 366 i~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 34566666899999987 56678999999997644
No 166
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=45.71 E-value=22 Score=30.19 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=20.5
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
||+.|++.+ ++|.+.||++.++...
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 999997765 6788899999887654
No 167
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=45.38 E-value=50 Score=26.39 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 21 MIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 21 ~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
-.-+..+++.|.++||+|++++...
T Consensus 14 ~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 14 ETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred hHHHHHHHHHHHhCCCeEEEEEecC
Confidence 3567889999999999999998654
No 168
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=44.90 E-value=73 Score=21.56 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=32.8
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
++....++..|-.-..-++..|.++|++|.++........+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56666778899999999999999999999998765544433
No 169
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=44.58 E-value=94 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHhCCCeEEEechhHH
Q 042879 116 TDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 116 ~~vA~~lgiP~v~f~~~~a~ 135 (189)
..+|+++|||.|+..++.-+
T Consensus 252 Al~Ak~~~vPfyV~a~~~kf 271 (344)
T PRK05720 252 AIAAKYHGVPFYVAAPSSTI 271 (344)
T ss_pred HHHHHHhCCCEEEecccccc
Confidence 47789999999997766543
No 170
>PRK05973 replicative DNA helicase; Provisional
Probab=44.41 E-value=65 Score=25.49 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=37.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSK 52 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~ 52 (189)
-+++..-||.|--+=.++++...+.+|..|.|++.+.....+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 56777889999999999999999999999999999877655543
No 171
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=44.18 E-value=55 Score=22.99 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 22 IPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 22 ~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
...+.|+++..+|||+|.+++....
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 4678899999999999999987643
No 172
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=43.73 E-value=1.2e+02 Score=24.40 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHHHHHHhhC---CCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCC-CCCCCCCCCCcccCCCCCCCHHHhhh
Q 042879 24 LVDMAKLFGSR---GVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPS-VEVGLPEGSENLNEMTSQPDMPVNLQ 99 (189)
Q Consensus 24 ~l~La~~La~~---G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~~~p~~~~~~~~~~~~~~l~~ll~ 99 (189)
+..|++.|... |++|+++.+....+.....+. ....+++..+.... .-+|-|.++- .-.+..++.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT----~~~pl~~~~~~~~~yav~GTPaDCV-------~lal~~~~~ 84 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS----YTHPMMIAELGPRRFAAEGSPADCV-------LAALYDVMK 84 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc----CCCCeEEEEeCCCeEEEcCchHHHH-------HHHHHHhcC
Confidence 34566666552 369999888765543222211 11235555442000 0011111110 011223443
Q ss_pred hcCCCEEEeCC----------CcchH---HHHHHHhCCCeEEEec
Q 042879 100 EHKPNCLVADM----------LFPWA---TDAAAKFGIPRLVFHG 131 (189)
Q Consensus 100 ~~~~d~vI~D~----------~~~~~---~~vA~~lgiP~v~f~~ 131 (189)
..+||+||+-. +...+ ..-|.-+|||.+.++-
T Consensus 85 ~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 85 DAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 23689998744 33332 3445678999999985
No 173
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=43.35 E-value=1.5e+02 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhC--CCeEEEEeCCcch
Q 042879 23 PLVDMAKLFGSR--GVKTTVITTPANA 47 (189)
Q Consensus 23 P~l~La~~La~~--G~~Vt~~t~~~~~ 47 (189)
-+.+.++.|.++ |++|+++|+....
T Consensus 19 vl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 19 VLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 456778888887 8999999988654
No 174
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.29 E-value=51 Score=23.67 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=27.1
Q ss_pred EEEEecCCCC-cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPLMAH-GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~p~~-GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
-++++-.|-. --+-..+-++++|-.+|++||+..++.
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateA 42 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEA 42 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHh
Confidence 4555555544 344556778999999999999998874
No 175
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=42.92 E-value=47 Score=24.47 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred CHHHhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEe
Q 042879 93 DMPVNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 130 (189)
++++++ +++||+||....... ..+--++.|||++.+.
T Consensus 61 n~E~ll-~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 61 NVELIV-ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CHHHHh-ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 344444 458999988653322 3344578999998875
No 176
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=42.86 E-value=86 Score=24.79 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=33.8
Q ss_pred EEEEecCC-CCcChHHHHHHHHHHhhCCCeEEEEeCCcchHH
Q 042879 9 HIIFFPLM-AHGHMIPLVDMAKLFGSRGVKTTVITTPANATL 49 (189)
Q Consensus 9 hvl~~p~p-~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~ 49 (189)
-|.+...- |.|--.-.+-||-.|+++|-+|+++-++.|.+-
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 45555554 459999999999999999999999999887653
No 177
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.36 E-value=43 Score=29.59 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=25.7
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
+.+.+++.+||+||.+. +...+|+++|||.+..
T Consensus 356 i~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 356 VADAIAALEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred HHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 34555666899999887 5678899999998755
No 178
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=41.79 E-value=1.2e+02 Score=25.79 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.1
Q ss_pred HHHHHHhCCCeEEEechhHH
Q 042879 116 TDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 116 ~~vA~~lgiP~v~f~~~~a~ 135 (189)
..+|+++|||.|+..+++-+
T Consensus 273 A~~Ak~~~vPfyV~ap~~k~ 292 (363)
T PRK05772 273 AVIAHELGIPFYALAPTSTF 292 (363)
T ss_pred HHHHHHhCCCEEEEcccccc
Confidence 46789999999998876644
No 179
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=41.71 E-value=99 Score=22.52 Aligned_cols=42 Identities=10% Similarity=-0.052 Sum_probs=35.7
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
+++.-.||.|--.=.++++...+.+|..|.++++......+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 567778899999999999999999999999999987665543
No 180
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=41.37 E-value=48 Score=26.46 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.9
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.|--.-...|++.|+++||+|+++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 4667788899999999999999998654
No 181
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=41.31 E-value=38 Score=22.88 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 22 IPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 22 ~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
.|.+.+++.|.++|.+|.+.-+.-......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~ 46 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIK 46 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHH
Confidence 588999999999999999987765554443
No 182
>PTZ00445 p36-lilke protein; Provisional
Probab=41.27 E-value=30 Score=27.08 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.4
Q ss_pred cChHH-HHHHHHHHhhCCCeEEEEeCCcc
Q 042879 19 GHMIP-LVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 19 GH~~P-~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
+|..| +..|.++|.++|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56667 88899999999999999997544
No 183
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=41.08 E-value=1.9e+02 Score=23.20 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
+..|++.|.+ +++|+++.+..+.+
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 5667777754 67999998876554
No 184
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=40.89 E-value=2.3e+02 Score=24.27 Aligned_cols=124 Identities=10% Similarity=0.128 Sum_probs=62.3
Q ss_pred ccEEEEecCCCC------cChHHHHHHHHHHhhCC-------CeEEEEeCC----cchHHHhhhccccccCCCceEEEEe
Q 042879 7 KLHIIFFPLMAH------GHMIPLVDMAKLFGSRG-------VKTTVITTP----ANATLFSKAIPRANELGIEIDIKTI 69 (189)
Q Consensus 7 ~~hvl~~p~p~~------GH~~P~l~La~~La~~G-------~~Vt~~t~~----~~~~~~~~~~~~~~~~~~~i~~~~l 69 (189)
...|+.+..|+. ||-.-+..|.+.|+... ..|-++... .+...++..+.. -+++...+
T Consensus 116 ~~~vi~v~t~gf~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~-----~Gl~v~~l 190 (417)
T cd01966 116 DVPVVYVSTPDFEGSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEA-----FGLEPIIL 190 (417)
T ss_pred CCeEEEecCCCCCCcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHH-----cCCceEEe
Confidence 457888888874 56677777777776532 347777422 222334433321 24666666
Q ss_pred eCCCCC-CCCCCCCCcccCCC-CCCCHHHhhhhc--CCCEEEeCCCcchHHHHHHHhCCCeEEE-echhHHHH
Q 042879 70 KFPSVE-VGLPEGSENLNEMT-SQPDMPVNLQEH--KPNCLVADMLFPWATDAAAKFGIPRLVF-HGTSFLSL 137 (189)
Q Consensus 70 p~~~~~-~~~p~~~~~~~~~~-~~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f-~~~~a~~~ 137 (189)
|..+.. |+ |...+ ...+. ....+.++-+.. ...+++.+.....+..+.+++|+|++.+ .+.+....
T Consensus 191 ~d~s~~~d~-~~~~~-~~~~~~ggt~leei~~~~~A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G~~~T 261 (417)
T cd01966 191 PDLSGSLDG-HLADD-WSPTTTGGTTLEDIRQMGRSAATLAIGESMRKAAEALEERTGVPYYVFPSLTGLEAV 261 (417)
T ss_pred cCcccccCC-CCCCC-ccccCCCCCcHHHHHhhccCeEEEEECHHHHHHHHHHHHHHCCCeeecCCCcchHHH
Confidence 532110 11 10000 00000 112344443332 4555665544444567888999999876 45555433
No 185
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=40.70 E-value=43 Score=25.49 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=26.8
Q ss_pred HhhhhcCCCEEEeCCCc--chHHHHHHHhCCCeEEEechh
Q 042879 96 VNLQEHKPNCLVADMLF--PWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~--~~~~~vA~~lgiP~v~f~~~~ 133 (189)
+.+.+++||+||..... .....-..+.|||.+.+....
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 33445589999988777 345566678899999998876
No 186
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=40.68 E-value=2e+02 Score=23.39 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=59.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHhhhccccccCCCceE-EEEeeCCCCCCCCCCCCCcc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFSKAIPRANELGIEID-IKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~-~~~lp~~~~~~~~p~~~~~~ 85 (189)
+|+++-.-+.|=+.=...+.+.|.++ +.+|++++.+.+..-++.. +.++ ++.++. ..+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~-------~~~~--- 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPL-------GHGA--- 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCC-------cccc---
Confidence 58888888899999999999999885 8999999987654433321 2343 222221 0000
Q ss_pred cCCCCCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeE
Q 042879 86 NEMTSQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRL 127 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 127 (189)
..+.....+...+++.++|++|.=........++.-.|++.-
T Consensus 63 ~~~~~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 63 LELTERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred hhhhHHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 000000112244455589987764443345566666677653
No 187
>PRK08939 primosomal protein DnaI; Reviewed
Probab=39.99 E-value=57 Score=26.78 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=36.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
..+++.-.+|-|--.=+..+|+.|+.+|.+|++++.+.....++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 46888888899888889999999999999999998875544444
No 188
>PRK09620 hypothetical protein; Provisional
Probab=39.59 E-value=33 Score=26.89 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=17.5
Q ss_pred HHHHHHHhhCCCeEEEEeCC
Q 042879 25 VDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~ 44 (189)
..||++|..+|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 67899999999999998754
No 189
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.50 E-value=84 Score=27.31 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=36.3
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
+..|+++..+|.|--.-...||+.|.++|++|.+++.+....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 346788888999999999999999999999999998876543
No 190
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=39.49 E-value=1.2e+02 Score=24.37 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=26.8
Q ss_pred CHHHhhhhcCCCEEEe-----CCCcc-hHHHHHHHhCCCeEEEe
Q 042879 93 DMPVNLQEHKPNCLVA-----DMLFP-WATDAAAKFGIPRLVFH 130 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~-----D~~~~-~~~~vA~~lgiP~v~f~ 130 (189)
.+.+.+++.++++|+. |.-.. -+..+|+.||+|.+.+-
T Consensus 102 ~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 102 ALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 3556666668898875 33333 35699999999998765
No 191
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=39.07 E-value=95 Score=19.30 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=27.1
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
+++....|.|--.-...|++.|++.|.+|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445556678888899999999999999998775
No 192
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=38.42 E-value=55 Score=29.02 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
+.+.+++.+||+||.+. +...+|+++|||.+.+
T Consensus 354 l~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 354 VEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 44566666899999876 4677999999998754
No 193
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.42 E-value=35 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=21.9
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
|-++.-.+.|-+ -.+||++|+++|++|+++..
T Consensus 17 VR~itN~SSG~i--G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 17 VRGITNHSTGQL--GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred ceeecCccchHH--HHHHHHHHHhCCCEEEEEEC
Confidence 334444444433 35788999999999999874
No 194
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=38.36 E-value=56 Score=27.47 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=26.8
Q ss_pred ccEEEEecC-CCCcChHHHHHHHHHHhhCC---CeEEEEe
Q 042879 7 KLHIIFFPL-MAHGHMIPLVDMAKLFGSRG---VKTTVIT 42 (189)
Q Consensus 7 ~~hvl~~p~-p~~GH~~P~l~La~~La~~G---~~Vt~~t 42 (189)
.++|++++. -|.||.-.--.|.++|..+| .+|.++-
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D 44 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHD 44 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEee
Confidence 347777775 45699999999999998875 4566553
No 195
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.36 E-value=62 Score=25.14 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=24.9
Q ss_pred CHHHhhhhcCCCEEEeCCCcch--HH-HHHHHhCCCeEEEech
Q 042879 93 DMPVNLQEHKPNCLVADMLFPW--AT-DAAAKFGIPRLVFHGT 132 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~--~~-~vA~~lgiP~v~f~~~ 132 (189)
.++++ .+++||+||....... .. .+.+..|||++.+...
T Consensus 66 n~E~i-~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKI-AALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHH-HhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 34444 4558999998755433 23 3444589999888754
No 196
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.11 E-value=43 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=30.0
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
=|++--+|+.|--.-.-+|||.|.+++++|..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 46777889999999999999999999998876654
No 197
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=38.10 E-value=75 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+.+|.+=..||.|--.-|++=|++|.++|.+|.+-....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 34678888899999999999999999999999998865543
No 198
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=38.10 E-value=48 Score=24.61 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=26.0
Q ss_pred CHHHhhhhc---CCCEEEeCCCcchHHHHHHHhCCCeEEEechhH
Q 042879 93 DMPVNLQEH---KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 93 ~l~~ll~~~---~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 134 (189)
.+++.+.+. ++|+||.+.. +...|+++|+|++.+.++--
T Consensus 113 e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 113 EIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred HHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 344555443 7999999974 57999999999988877443
No 199
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=38.02 E-value=2.1e+02 Score=22.87 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCC-CCCCCCCCCCcccCCCCCCCHHHhhhhcC
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPS-VEVGLPEGSENLNEMTSQPDMPVNLQEHK 102 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~~~p~~~~~~~~~~~~~~l~~ll~~~~ 102 (189)
+..|++.|.+. ++|+++.+....+-....+. ....+++..+.... .-+|-|.++-. -.+..++.+ +
T Consensus 16 i~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait----~~~pl~~~~~~~~~~~v~GTPaDcV~-------~gl~~l~~~-~ 82 (250)
T PRK00346 16 IRALAEALREL-ADVTVVAPDRERSGASHSLT----LTRPLRVEKVDNGFYAVDGTPTDCVH-------LALNGLLDP-K 82 (250)
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCcCCccccc----CCCCeEEEEecCCeEEECCcHHHHHH-------HHHHhhccC-C
Confidence 55678888777 68999888765433222211 11235554441000 00111111100 011222222 6
Q ss_pred CCEEEeCCC----------cchH---HHHHHHhCCCeEEEec
Q 042879 103 PNCLVADML----------FPWA---TDAAAKFGIPRLVFHG 131 (189)
Q Consensus 103 ~d~vI~D~~----------~~~~---~~vA~~lgiP~v~f~~ 131 (189)
||+||+-.. ...+ ..-|.-.|||.+.++-
T Consensus 83 pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 83 PDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred CCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 898887543 3332 3445678999999986
No 200
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=37.99 E-value=35 Score=26.13 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc--cCCCCCCCHH----Hh
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL--NEMTSQPDMP----VN 97 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~--~~~~~~~~l~----~l 97 (189)
+..|.+.|.+.||+|+++.+..+.+.....+. ....+++...... ..+.+.... +-.+ .+.++ .+
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit----~~~pl~~~~~~~~----~~~~~~~~~~v~GTP-aDcv~~al~~~ 86 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSGTGHSIT----LHKPLRVTEVEPG----HDPGGVEAYAVSGTP-ADCVKLALDGL 86 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-T----TCCSTTEEEEESS-H-HHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcCcceeec----CCCCeEEEEEEec----ccCCCCCEEEEcCcH-HHHHHHHHHhh
Confidence 56788999777899999998876543322211 1223555333100 001111100 0000 11122 33
Q ss_pred hhhcCCCEEEeCC----------Ccch---HHHHHHHhCCCeEEEechhH
Q 042879 98 LQEHKPNCLVADM----------LFPW---ATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 98 l~~~~~d~vI~D~----------~~~~---~~~vA~~lgiP~v~f~~~~a 134 (189)
+.+.+||+||+-. +... +..-|...|||.+.++...-
T Consensus 87 ~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 87 LPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp STTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred hccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 3333599999853 2222 23445678999999887543
No 201
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=37.92 E-value=36 Score=25.62 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=25.8
Q ss_pred HHHhhhhc-CCCEEEeCCCcch--HHHHHHHhCCCeEEEechh
Q 042879 94 MPVNLQEH-KPNCLVADMLFPW--ATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 94 l~~ll~~~-~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~ 133 (189)
++.+|+.. ++.-+|.|.|++. +..+|.++|--++.+=...
T Consensus 181 ~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 181 IERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 34555443 7788999999985 4688899998888765444
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=37.52 E-value=92 Score=26.02 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=35.1
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
...|+++-.+|.|--.-...||..|..+|++|.++++...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3478888899999999999999999999999999887644
No 203
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=37.38 E-value=89 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=35.3
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
..|+++-.+|.|--.-...||..|..+|.+|.+++++.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3677888899999999999999999999999999987654
No 204
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.29 E-value=51 Score=24.86 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATL 49 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~ 49 (189)
+|++.-.. ..-..-..++.++|.++|++|.++.|+.-...
T Consensus 3 ~Ill~vtG-siaa~~~~~li~~L~~~g~~V~vv~T~~A~~f 42 (182)
T PRK07313 3 NILLAVSG-SIAAYKAADLTSQLTKRGYQVTVLMTKAATKF 42 (182)
T ss_pred EEEEEEeC-hHHHHHHHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 45555443 33444589999999999999999998864433
No 205
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=37.08 E-value=58 Score=26.99 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHH--HHHhCCCeEEEec
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDA--AAKFGIPRLVFHG 131 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~v--A~~lgiP~v~f~~ 131 (189)
+++++++.+||+||++.-......+ +..+++|.+...+
T Consensus 96 l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 96 LKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred HHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 3456666699999998543322222 2346689875443
No 206
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.97 E-value=31 Score=27.76 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=28.1
Q ss_pred CCCCccEEEEecCCCCcChHHHHHHHHHHhhC
Q 042879 3 GEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSR 34 (189)
Q Consensus 3 ~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~ 34 (189)
+....+|+++--.||-|......-||++|.-.
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 34567899999999999999999999999763
No 207
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=36.39 E-value=83 Score=20.13 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=26.4
Q ss_pred EEEEecCCCC--cChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAH--GHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~--GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+|+++|.... .+..-.++++..|.+.|.+|.+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 6788886542 4566788889999889999987543
No 208
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=35.66 E-value=57 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=26.0
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
+|++-=..+.|=+--.+++.++|.+.|++|+++.|..-.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 344433333343433459999999999999999887543
No 209
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=35.56 E-value=36 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 23 PLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
-.+-|+.+|.++|++|++..++.-...+
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 3567899999999999999987644333
No 210
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.54 E-value=44 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhCCCeEEEEeCC
Q 042879 23 PLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~ 44 (189)
-.+..|++|+.+|++|+..-..
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 3578999999999988876543
No 211
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=35.52 E-value=63 Score=24.12 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=32.1
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHH
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATL 49 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~ 49 (189)
...++++-.+|-|--.=...+++++..+|..|.|++.......
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 4578888889998888889999999999999999987654433
No 212
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=35.42 E-value=1.1e+02 Score=24.04 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=35.7
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLF 50 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~ 50 (189)
.-+++...||.|--.-+++++..++.. |..|.+++.+.....+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 356777788999999999999999877 9999999997665443
No 213
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=35.30 E-value=1.1e+02 Score=24.49 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=29.3
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
.+++++. .|.| +.|++.+++.|+++|.+|+++-...+..
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 3677766 2334 7899999999999999999887665443
No 214
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=35.13 E-value=70 Score=26.41 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=39.4
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHH
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLF 50 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~ 50 (189)
|++. ..+|+++-.-+.|-+.=...+.+.|.++ +.+|++++.+.+..-+
T Consensus 1 ~~~~--~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 1 MDKP--FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CCCC--CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 5543 4589999999999999999999999886 8999999988765444
No 215
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.95 E-value=65 Score=27.61 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
+.+++++.++|+||.+. +...+|+++|+|.+.+.
T Consensus 363 l~~~i~~~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 363 LESLAKEEPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHhhccCCCEEEECc---hhHHHHHhcCCCEEEec
No 216
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=34.77 E-value=49 Score=28.95 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=25.4
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRL 127 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 127 (189)
+.+.+++.++|++|.. .+...+|+++|||.+
T Consensus 385 ~~~~i~~~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 385 LYKMLKEAKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred HHHHHhhcCCCEEEec---CchhhhhhhcCCCEE
Confidence 4456666789999997 567799999999997
No 217
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.67 E-value=49 Score=24.44 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=23.0
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
..+|+++.-++. .=-=-+.+||.|+++|++|+++.
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 457777775432 01134678999999999999944
No 218
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=34.57 E-value=42 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=21.4
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+|.++.. .|+.- -++.++...|||+||-++-.
T Consensus 2 KIaiIgA--sG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 2 KIAIIGA--SGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred eEEEEec--CchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 4555553 33332 35788888999999988754
No 219
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=34.32 E-value=42 Score=27.07 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
-.++|++|+.||++|.++.=
T Consensus 19 G~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 19 GAELAKQLARRGYNLILVAR 38 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 37899999999999988864
No 220
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=34.23 E-value=75 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=29.2
Q ss_pred ccEEEEecCCCCcCh-----HHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHM-----IPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~-----~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|+++| |+|=- ....+|++.|.+||.+|.|..-+
T Consensus 306 A~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHP 346 (462)
T PRK09444 306 SHSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHP 346 (462)
T ss_pred CCcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 34888888 55543 67899999999999999998765
No 221
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=34.16 E-value=1.3e+02 Score=23.68 Aligned_cols=42 Identities=7% Similarity=-0.032 Sum_probs=34.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLF 50 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~ 50 (189)
=+++-..|+.|.-.-++++|..++.+ |+.|.+++.+-....+
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 35667779999999999999999987 6999999998665543
No 222
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=33.81 E-value=89 Score=26.19 Aligned_cols=33 Identities=6% Similarity=-0.074 Sum_probs=23.0
Q ss_pred CCCEE-EeCC--CcchHHHHHHHh--CCCeEEEechhH
Q 042879 102 KPNCL-VADM--LFPWATDAAAKF--GIPRLVFHGTSF 134 (189)
Q Consensus 102 ~~d~v-I~D~--~~~~~~~vA~~l--giP~v~f~~~~a 134 (189)
+||++ ..|+ |......-+++. |||.+.|.+-..
T Consensus 76 ~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pqv 113 (347)
T PRK14089 76 QADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQV 113 (347)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc
Confidence 89985 5586 555566667778 799988766543
No 223
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.77 E-value=94 Score=21.09 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=26.2
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
..|+-..+.+.++.+.++|..|..+|.....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 5688899999999999999999888876544
No 224
>PRK07206 hypothetical protein; Provisional
Probab=33.44 E-value=1.6e+02 Score=24.84 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=47.6
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHH-HhhhccccccCCCceEEEEeeCCCCCCCCCCCCCccc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATL-FSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLN 86 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~ 86 (189)
.+++++-. . ..-..+++.+.++|+++.+++....... .... ...... ....+.
T Consensus 3 k~~liv~~-~----~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~----------~~~~~~-----~~~i~~------ 56 (416)
T PRK07206 3 KKVVIVDP-F----SSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYAS----------FDTSDF-----IEVIIN------ 56 (416)
T ss_pred CeEEEEcC-C----chHHHHHHHHHHcCCeEEEEEcCCCCchhhhcc----------cCcccc-----hhhhcC------
Confidence 36676663 2 2234688888889999988886643211 0000 000000 000000
Q ss_pred CCCCCCCHHHhhhhcCCCEEE--eCCCcchHHHHHHHhCCC
Q 042879 87 EMTSQPDMPVNLQEHKPNCLV--ADMLFPWATDAAAKFGIP 125 (189)
Q Consensus 87 ~~~~~~~l~~ll~~~~~d~vI--~D~~~~~~~~vA~~lgiP 125 (189)
...+.+.+++++.++|.|| +|.....+..+++++|+|
T Consensus 57 --~~~~~l~~~~~~~~~d~vi~~~e~~~~~~a~l~~~l~l~ 95 (416)
T PRK07206 57 --GDIDDLVEFLRKLGPEAIIAGAESGVELADRLAEILTPQ 95 (416)
T ss_pred --CCHHHHHHHHHHcCCCEEEECCCccHHHHHHHHHhcCCC
Confidence 0123455666666888888 444444556677788887
No 225
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=33.32 E-value=68 Score=24.18 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
..+|.++|.++|++|.++.|+.-...+
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 478999999999999999998655444
No 226
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=33.30 E-value=79 Score=25.91 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=30.3
Q ss_pred EEEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 9 HIIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 9 hvl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
++++|.- .|.|--.--..+|.+++++|.+|-+++++..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 3444444 455999999999999999999999999886543
No 227
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.28 E-value=3.6e+02 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=31.7
Q ss_pred ccEEEEecC--CCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 7 KLHIIFFPL--MAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 7 ~~hvl~~p~--p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
+.+++.|.. +|.|--.-...||..|+..|.+|-++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345555544 6779999999999999999999999877644
No 228
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=33.04 E-value=1.2e+02 Score=23.06 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=39.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc---chHHHhhhccccccCCCceEEEEee
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA---NATLFSKAIPRANELGIEIDIKTIK 70 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~---~~~~~~~~~~~~~~~~~~i~~~~lp 70 (189)
-|+|+..++.-|=--+.+.+++|++.|.+|.++.... +.+.++....... .+.+-+++.+|
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~ 173 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVP 173 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeC
Confidence 3788888878887667789999999999998887543 3444444433221 12234666665
No 229
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=32.93 E-value=48 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.6
Q ss_pred HHHHHHhhCCCeEEEEeCCc
Q 042879 26 DMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 26 ~La~~La~~G~~Vt~~t~~~ 45 (189)
-+|.+|++.|++|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999876
No 230
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=32.82 E-value=32 Score=22.01 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCCEEEeCCCc--chHHHHHHHhCCCeEEEec
Q 042879 102 KPNCLVADMLF--PWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 102 ~~d~vI~D~~~--~~~~~vA~~lgiP~v~f~~ 131 (189)
+...||.+.-. .-+.-+|+++|||.++-..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 68888888643 3467899999999997553
No 231
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=32.63 E-value=45 Score=26.92 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.7
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
||+.| +...++|.+.||++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7777788888999887654
No 232
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=32.58 E-value=1.2e+02 Score=23.09 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=32.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
-+.+.-.||.|.-.=.++++...+.+|.+|.|++++
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 457778899999999999999999999999999998
No 233
>PRK10867 signal recognition particle protein; Provisional
Probab=32.30 E-value=1.3e+02 Score=26.05 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=36.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATL 49 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~ 49 (189)
.-|+++-.+|.|--.-...||..|+.+ |.+|.+++.+.....
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 356778888999999999999999998 999999998865543
No 234
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=32.24 E-value=67 Score=26.20 Aligned_cols=37 Identities=30% Similarity=0.245 Sum_probs=24.4
Q ss_pred HHHhhhhcCCCEEEeCC--Ccch-HHHHHHHhCCCeEEEe
Q 042879 94 MPVNLQEHKPNCLVADM--LFPW-ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~--~~~~-~~~vA~~lgiP~v~f~ 130 (189)
+.+.+++.+||+|++-. +..+ +..+|+.+|||++...
T Consensus 80 l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 80 LEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 33555555899877643 2223 4577888999998754
No 235
>PRK06128 oxidoreductase; Provisional
Probab=32.19 E-value=1.4e+02 Score=23.95 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCCeEEEEeC
Q 042879 25 VDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~ 43 (189)
..++++|+++|++|.+...
T Consensus 69 ~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 69 RATAIAFAREGADIALNYL 87 (300)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 6789999999999977643
No 236
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=32.14 E-value=2.9e+02 Score=22.69 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=36.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~ 51 (189)
+|+++-.-+.|=+.=...+.+.|.++ +.+|++++.+....-++
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 46 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS 46 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh
Confidence 68999999999999999999999885 89999999876554443
No 237
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=31.75 E-value=97 Score=26.09 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred HHHhhhhcCCCEEEeCCCcch----------HHHHHHHhCCCeEEEe
Q 042879 94 MPVNLQEHKPNCLVADMLFPW----------ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 130 (189)
+.+++++.++|++|+-..+.. +..|.+++|||.+.-.
T Consensus 72 i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 72 ILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 446667779999999975542 2346679999998643
No 238
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.74 E-value=47 Score=21.86 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHKP 103 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~~ 103 (189)
++++||+|.+.|++ ++.|......+++. ++....+-......+.+.+ ...+.+++++.++
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~g---------~~~i~~~i~~~~I 61 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH---------GIEVTEVVNKIGEGESPDG---------RVQIMDLIKNGKI 61 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT---------T--EEECCEEHSTG-GGTH---------CHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc---------CCCceeeeeecccCccCCc---------hhHHHHHHHcCCe
Confidence 57899999999954 56666555555543 3443222100000000000 0125677777788
Q ss_pred CEEEeCCCcc---------hHHHHHHHhCCCeE
Q 042879 104 NCLVADMLFP---------WATDAAAKFGIPRL 127 (189)
Q Consensus 104 d~vI~D~~~~---------~~~~vA~~lgiP~v 127 (189)
|+||.-.--. .....|.+.|||.+
T Consensus 62 dlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 62 DLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp EEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred EEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 9887654322 12467788888875
No 239
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=31.68 E-value=1.2e+02 Score=22.12 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=29.2
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.++-+.+.|--.=+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45667788898888999999999999999988643
No 240
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=31.55 E-value=1.4e+02 Score=24.08 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=33.7
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhC-C-CeEEEEeCCcch
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSR-G-VKTTVITTPANA 47 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~-G-~~Vt~~t~~~~~ 47 (189)
..++++-..|.|--.-...||..++.+ | ++|.+++++...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 356777778889999999999999886 5 999999988653
No 241
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.55 E-value=57 Score=25.38 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCeEEEEeCCcch
Q 042879 25 VDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
-.||++|+..||+|++.+.....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCChh
Confidence 56899999999999999877654
No 242
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=31.55 E-value=58 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=20.5
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
||+.+++ ..++|.+.|+++.++...
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D 41 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGD 41 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECC
Confidence 9999986 677787889999887665
No 243
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.45 E-value=50 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=27.6
Q ss_pred cEEEEecCCCCcChHHH------------HHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPL------------VDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~------------l~La~~La~~G~~Vt~~t~~~ 45 (189)
.+|++-.-|-.--+.|. ..||+++..+|++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 36666665555555554 468899999999999998654
No 244
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.34 E-value=54 Score=23.83 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.8
Q ss_pred HHHHHHHhhCCCeEEEEeCCc
Q 042879 25 VDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~ 45 (189)
..++++|.++|++|+.++-..
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSG
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 468999999999999998653
No 245
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=30.92 E-value=67 Score=26.18 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=25.9
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+|+++-..+.|= -+|.+|++.||+|+++.-..
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 45888886665553 47888999999999997654
No 246
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=30.91 E-value=65 Score=25.40 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 22 IPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 22 ~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
-++++|.+.|.++|+.|.++|.-..
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 5788999999999999999998654
No 247
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=30.83 E-value=44 Score=26.52 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=16.4
Q ss_pred HHHHHHhhCCCeEEEEeCC
Q 042879 26 DMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 26 ~La~~La~~G~~Vt~~t~~ 44 (189)
-+|..|++.||+||++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 3788899999999999875
No 248
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=30.76 E-value=51 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.5
Q ss_pred HHHHHHHhhCCCeEEEEeCCc
Q 042879 25 VDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 368999999999999999874
No 249
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=30.69 E-value=45 Score=27.89 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=26.2
Q ss_pred ecCCCC-cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 13 FPLMAH-GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 13 ~p~p~~-GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+|+|.. |.-.=+.++++.|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 566655 8889999999999765 8999998754
No 250
>PLN00016 RNA-binding protein; Provisional
Probab=30.57 E-value=75 Score=26.51 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=24.5
Q ss_pred ccEEEEecC--CCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPL--MAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~--p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+|+++.. .+-|.+ -..|+++|+++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 346777711 122333 467889999999999998754
No 251
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=30.56 E-value=1e+02 Score=25.75 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=24.0
Q ss_pred EEecCCCCcChHHHHHHHHHHhhC-C--CeEEEEeC
Q 042879 11 IFFPLMAHGHMIPLVDMAKLFGSR-G--VKTTVITT 43 (189)
Q Consensus 11 l~~p~p~~GH~~P~l~La~~La~~-G--~~Vt~~t~ 43 (189)
++-..-|.||.-.--.|.+.|.++ | .+|+++..
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~ 38 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDL 38 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEeh
Confidence 344557889999999999999764 4 55666543
No 252
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=30.30 E-value=1.3e+02 Score=21.54 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.2
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
+.|.++-+...|--.=+..|.++|.++|++|.++-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 35777888888999999999999999999988543
No 253
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=30.22 E-value=1.4e+02 Score=22.11 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=29.4
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEE
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVI 41 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~ 41 (189)
-|.++..+|.|-....+.+|-+.+.+|.+|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467788889999999999999999999999983
No 254
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=30.00 E-value=66 Score=27.69 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=23.4
Q ss_pred EEecCCC---CcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 11 IFFPLMA---HGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 11 l~~p~p~---~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+=|... -||+.|++. .++|...||++.++...
T Consensus 39 G~dPT~~sLHlGhlv~l~~-l~~lq~~G~~~~~ligd 74 (410)
T PRK13354 39 GFDPTAPSLHIGHLVPLMK-LKRFQDAGHRPVILIGG 74 (410)
T ss_pred cccCCCCCcchhhHHHHHH-HHHHHHcCCeEEEEEcc
Confidence 4445532 299999666 55788899999888744
No 255
>PRK05920 aromatic acid decarboxylase; Validated
Probab=29.94 E-value=86 Score=24.21 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=30.7
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
.+|++-- .|.....=..++.++|.+.|++|+++.|..-...+
T Consensus 4 krIllgI-TGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAI-TGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEE-eCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 3555443 35555578889999999999999999988654433
No 256
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.65 E-value=1.5e+02 Score=25.85 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=35.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
..|+++-..|.|--.-+..||..|..+|.+|.+++++...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4778888899999999999999999999999999987653
No 257
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=29.60 E-value=2e+02 Score=23.82 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=27.6
Q ss_pred HhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEEechhHH
Q 042879 96 VNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
++++...|.+||++.+.. +...+|++.++|.+...-.+..
T Consensus 77 ~~~~~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 77 NLLTLNPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 333333677788887765 4569999999999875554433
No 258
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=29.59 E-value=68 Score=24.08 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=24.9
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
|.+...-..+|.++|.++|++|.++.|+.-.
T Consensus 9 Gs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~ 39 (177)
T TIGR02113 9 GSIAAYKAADLTSQLTKLGYDVTVLMTQAAT 39 (177)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEChHHH
Confidence 4555667779999999999999999887544
No 259
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=29.52 E-value=32 Score=21.74 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=12.6
Q ss_pred HHHHHHHhhCCCeEEEEeC
Q 042879 25 VDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~ 43 (189)
-+|...|..+|++||=.|.
T Consensus 23 ~eL~~~L~~~Gi~vTQaTi 41 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATI 41 (70)
T ss_dssp HHHHHHHHHTT-T--HHHH
T ss_pred HHHHHHHHHcCCCcchhHH
Confidence 4789999999998775553
No 260
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=29.38 E-value=1e+02 Score=25.75 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHhhhhcCCCEEEeC--CCcc-hHHHHHHHhCCCeEEEech
Q 042879 94 MPVNLQEHKPNCLVAD--MLFP-WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D--~~~~-~~~~vA~~lgiP~v~f~~~ 132 (189)
+.+++++.+||+|++= -+.. .+..+|..+|||.+.+...
T Consensus 85 ~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 85 FSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 4466666689987654 3433 3468889999999976654
No 261
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=29.35 E-value=72 Score=24.66 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCCEEEeCCCcchHHHHHHHhCCCeEEEec
Q 042879 102 KPNCLVADMLFPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 102 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 131 (189)
.+.+||+|-=.-.+...|++.|||++.+..
T Consensus 28 ~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 28 DVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 456888885444568899999999987644
No 262
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=29.26 E-value=80 Score=24.98 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=28.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCC--CeEEEEeCCcchH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRG--VKTTVITTPANAT 48 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G--~~Vt~~t~~~~~~ 48 (189)
+|+++. .|-| +.|+.++++++.++| .+|+++.......
T Consensus 109 ~vllia-gGtG-~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~ 148 (252)
T COG0543 109 PVLLIA-GGTG-IAPLYAIAKELKEKGDANKVTLLYGARTAK 148 (252)
T ss_pred cEEEEe-cccC-HhHHHHHHHHHHhcCCCceEEEEEeccChh
Confidence 366655 2445 459999999999999 9999998765543
No 263
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.21 E-value=30 Score=22.11 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEeC
Q 042879 22 IPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 22 ~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+-||.|..++..+|.+|+|..-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 4689999999999999999754
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=29.20 E-value=2e+02 Score=19.89 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=35.1
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
+++++-.+|.|.-.=...+++.++.+|..|.++..+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 467788899999999999999999999999999887655433
No 265
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.14 E-value=4.3e+02 Score=25.87 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhh
Q 042879 20 HMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQ 99 (189)
Q Consensus 20 H~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~ 99 (189)
.-.=+.+++++|.+.|+++ ++|......++.. ++.+..+..+ .+ ..+.+.++++
T Consensus 948 dK~~l~~~a~~l~~~G~~i--~aT~gT~~~l~~~---------gi~~~~v~~~------~~---------~~~~i~~~i~ 1001 (1066)
T PRK05294 948 DKEEVVELAKRLLELGFKI--LATSGTAKFLREA---------GIPVELVNKV------HE---------GRPHIVDLIK 1001 (1066)
T ss_pred cHHHHHHHHHHHHHcCCEE--EEccHHHHHHHHC---------CCeeEEEeec------cC---------cCccHHHHHH
Confidence 4566888999999988754 5665555555432 3554444211 01 1245778888
Q ss_pred hcCCCEEEeCCCc-------chHHHHHHHhCCCeEE
Q 042879 100 EHKPNCLVADMLF-------PWATDAAAKFGIPRLV 128 (189)
Q Consensus 100 ~~~~d~vI~D~~~-------~~~~~vA~~lgiP~v~ 128 (189)
+.++|+||.-.-- ++....|-++|||.+.
T Consensus 1002 ~~~idlvIn~~~~~~~~~~g~~iRr~Av~~~ip~~T 1037 (1066)
T PRK05294 1002 NGEIDLVINTPTGRQAIRDGFSIRRAALEYKVPYIT 1037 (1066)
T ss_pred cCCeEEEEECCCCcccccccHHHHHHHHHcCCCEEe
Confidence 7789999886422 2356788899999984
No 266
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=29.11 E-value=1.4e+02 Score=23.62 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.0
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+++.|++++-.+.+.. -...+++.|.++|++|..+.-..
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccC
Confidence 3568999987665443 35677888888999998876543
No 267
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.08 E-value=1.4e+02 Score=18.77 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=26.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+|++++. ..++..-.+.+++.|.+.|.+|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5666665 567888899999999999999988543
No 268
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.98 E-value=99 Score=26.43 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=24.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.+++++ |.|+ .-+ .+|+.|+++|++|+++....
T Consensus 6 k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 456555 5666 444 99999999999999987653
No 269
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.87 E-value=1.8e+02 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=34.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHh-hCCCeEEEEeCCcchH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFG-SRGVKTTVITTPANAT 48 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La-~~G~~Vt~~t~~~~~~ 48 (189)
.-++++..+|.|--.-...||..|. .+|.+|.++..+....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3677888899999999999999997 5799999999886544
No 270
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=28.85 E-value=1.5e+02 Score=19.73 Aligned_cols=54 Identities=19% Similarity=0.079 Sum_probs=35.6
Q ss_pred CHHHhhhhcCCCEEEeCCCcc-----h--HHHHHHHhCCCeEEEechhHHHHHHHHHHHhh
Q 042879 93 DMPVNLQEHKPNCLVADMLFP-----W--ATDAAAKFGIPRLVFHGTSFLSLCATACLMLY 146 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~-----~--~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~ 146 (189)
.++++++....|++..|.... + ...+|+++|+++..-...+...+++..|+-..
T Consensus 9 ~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hlaaa 69 (111)
T PF13378_consen 9 DFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHLAAA 69 (111)
T ss_dssp HHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHHHHh
Confidence 456777766789999995332 2 24778999999877665555555666665543
No 271
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=28.75 E-value=1.6e+02 Score=24.33 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=35.0
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
...++++-.+|.|--.-...||..+..+|.+|.++..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 3467788889999999999999999999999999988754
No 272
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=28.70 E-value=1e+02 Score=27.43 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=23.2
Q ss_pred HHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEE
Q 042879 95 PVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLV 128 (189)
Q Consensus 95 ~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 128 (189)
++++.+.++|++|... +...+|+++|||.+.
T Consensus 430 ~~~l~~~~~DlliG~s---~~k~~a~~~giPlir 460 (515)
T TIGR01286 430 RSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIR 460 (515)
T ss_pred HHHHhhcCCCEEEECc---hHHHHHHHcCCCEEE
Confidence 3444455789999775 467899999999863
No 273
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=28.67 E-value=1.3e+02 Score=24.99 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=35.4
Q ss_pred CHHHhhhhc-----CCCEEEe-----CCCcch-HHHHHHHhCCCeEEEechhHHHHHHHHHHH
Q 042879 93 DMPVNLQEH-----KPNCLVA-----DMLFPW-ATDAAAKFGIPRLVFHGTSFLSLCATACLM 144 (189)
Q Consensus 93 ~l~~ll~~~-----~~d~vI~-----D~~~~~-~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 144 (189)
..+++|++. .+|+||+ |.+++. +..|.++||+-.+.-+-.+++|.++.+.+.
T Consensus 59 Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG~~~~~afDl~aaCsgf~yaL~ 121 (323)
T COG0332 59 AARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFLYALS 121 (323)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhCCCCcceeechhhhHHHHHHHH
Confidence 345666654 4799886 555565 469999999999666666666656665544
No 274
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.64 E-value=1.2e+02 Score=22.27 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCHHHhhhhcCCCEEEeCCCcch-HHHHHHHhCCCeEEEech
Q 042879 92 PDMPVNLQEHKPNCLVADMLFPW-ATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~~-~~~vA~~lgiP~v~f~~~ 132 (189)
.++++++ +++||+||....... ..+--++.|+|++.+...
T Consensus 51 ~n~E~l~-~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 51 PNVEKIV-ALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred CCHHHHh-ccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 3454444 458999988653332 334457889999887643
No 275
>PRK05802 hypothetical protein; Provisional
Probab=28.51 E-value=91 Score=25.72 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=28.4
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
+++++. +-.=+.|++.+++.|.++|.+|+++-......
T Consensus 174 ~~llIa--GGiGIaPl~~l~~~l~~~~~~v~li~g~r~~~ 211 (320)
T PRK05802 174 KSLVIA--RGIGQAPGVPVIKKLYSNGNKIIVIIDKGPFK 211 (320)
T ss_pred eEEEEE--eEEeHHHHHHHHHHHHHcCCcEEEEEeCCCHH
Confidence 666665 33337899999999999988999887655443
No 276
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=28.48 E-value=61 Score=25.26 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.3
Q ss_pred HHHHHHHHhhCCCeEEEEe
Q 042879 24 LVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t 42 (189)
-..+|++|+++|++|+++.
T Consensus 28 G~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHHCCCEEEEEc
Confidence 3578999999999999875
No 277
>PRK13604 luxD acyl transferase; Provisional
Probab=28.41 E-value=1.4e+02 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=23.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
..+++.....++-.-+..+|+.|+++|+.|.-+-
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3444443344565669999999999999887654
No 278
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.39 E-value=1.3e+02 Score=19.75 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=25.7
Q ss_pred CCCEE--EeCCCcc---h-HHHHHHHhCCCeEEEechhHHHH
Q 042879 102 KPNCL--VADMLFP---W-ATDAAAKFGIPRLVFHGTSFLSL 137 (189)
Q Consensus 102 ~~d~v--I~D~~~~---~-~~~vA~~lgiP~v~f~~~~a~~~ 137 (189)
+.|+| +.|...- | +...|++.|+|.+..-..+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 56765 6676543 3 45889999999999886666543
No 279
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.35 E-value=56 Score=25.44 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCeEEEEeCCc
Q 042879 25 VDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+|+.|.+.||+|+.+-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 578999999999999997754
No 280
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=28.33 E-value=87 Score=27.46 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=27.4
Q ss_pred ccEEEEecCCCCcC-----hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGH-----MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH-----~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|+++| |+|= -....+|++.|.++|.+|.|..-+
T Consensus 307 A~~VvIVP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 347 (463)
T PF02233_consen 307 AKKVVIVP--GYGMAVAQAQHAVAELADLLEERGVEVKFAIHP 347 (463)
T ss_dssp -SEEEEEE--SHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred cCceEEec--CchHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 34899988 5543 368999999999999999998866
No 281
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.29 E-value=1e+02 Score=25.60 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=34.6
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
..++++-.+|.|--.=+..+|+++..+|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5688888888888877888999999999999999876544433
No 282
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.26 E-value=75 Score=25.87 Aligned_cols=37 Identities=24% Similarity=0.109 Sum_probs=26.0
Q ss_pred CCHHHhhhhc-------CCCEEEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 92 PDMPVNLQEH-------KPNCLVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 92 ~~l~~ll~~~-------~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
..++++++.. .+.+||+|- ..+..+|+++|||++.+.
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 4566777432 456788874 346677999999999863
No 283
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=28.20 E-value=1.9e+02 Score=22.17 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=32.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
+--|.++...|.|-....+.+|.+.+.+|.+|.++-
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 458899999999999999999999999999998875
No 284
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.18 E-value=1.2e+02 Score=22.93 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=31.4
Q ss_pred CHHHhhhhcCC--CEEEeCCCcc-hHHHHHHHhCCCeEEEechhHHHH
Q 042879 93 DMPVNLQEHKP--NCLVADMLFP-WATDAAAKFGIPRLVFHGTSFLSL 137 (189)
Q Consensus 93 ~l~~ll~~~~~--d~vI~D~~~~-~~~~vA~~lgiP~v~f~~~~a~~~ 137 (189)
.+.+++++... .++|--.+-+ ++..+|+++|+|.+.+.|+--...
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~ 95 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYE 95 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHH
Confidence 34566666543 3666666654 567899999999999988765543
No 285
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.09 E-value=97 Score=23.02 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=27.1
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc-hHHHhh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN-ATLFSK 52 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~-~~~~~~ 52 (189)
+++++. +-|.+.| |+.+|.++|.+|..+..+.. ...+.+
T Consensus 108 ~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~ 147 (160)
T TIGR00288 108 AVALVT--RDADFLP---VINKAKENGKETIVIGAEPGFSTALQN 147 (160)
T ss_pred EEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHH
Confidence 666666 7788866 55667788999999997643 334444
No 286
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.07 E-value=90 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.5
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCC-eEEEEeC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGV-KTTVITT 43 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~-~Vt~~t~ 43 (189)
.+++++.+.....+|.--+-++.++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678888888888899889999999998886 5656554
No 287
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.04 E-value=1e+02 Score=20.87 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=18.1
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCC-eEEE
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGV-KTTV 40 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~-~Vt~ 40 (189)
++.++.+..-...|+....++++++.+++. ++.+
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i 84 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPV 84 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeE
Confidence 445555555545555555555555555544 4443
No 288
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=28.03 E-value=1.3e+02 Score=24.18 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=28.0
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEech
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 132 (189)
+.+++.++.||+++..... +..+|++.|++.+.+.+.
T Consensus 214 ~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 214 EFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 4445558999999987663 458999999998876653
No 289
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=27.92 E-value=98 Score=20.27 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhh--CCCeEEEEeCCcc
Q 042879 21 MIPLVDMAKLFGS--RGVKTTVITTPAN 46 (189)
Q Consensus 21 ~~P~l~La~~La~--~G~~Vt~~t~~~~ 46 (189)
+.||+.+.+.+.+ .+.+|+++-...+
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~ 35 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGART 35 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEcc
Confidence 6899999999995 5678998765543
No 290
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=27.88 E-value=49 Score=23.38 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCHHHhhh--hc--CCCEEEe-------CCCcchHHHHHHHhCCCeEEEe
Q 042879 92 PDMPVNLQ--EH--KPNCLVA-------DMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 92 ~~l~~ll~--~~--~~d~vI~-------D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
+.+.++|+ +. ..--||. +.|+..+..+|++++||.+.=+
T Consensus 59 ~~v~~FL~~~~N~~~l~GVigSGNrNfg~~f~~aa~~ia~ky~VPll~kf 108 (122)
T PF07972_consen 59 KQVIRFLENPDNRKLLRGVIGSGNRNFGDNFCLAADKIAEKYGVPLLYKF 108 (122)
T ss_dssp HHHHHHHHSHHHGGGEEEEEEEE-GGGGGGTTHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHHHHhhheeEEecCCcHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44667776 22 2334554 4466667799999999997643
No 291
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.84 E-value=2.2e+02 Score=21.00 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhc--C
Q 042879 25 VDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEH--K 102 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~--~ 102 (189)
.++.++|.++|+.+.++|..... .+...+.... -...+..+... +... ..-+..+.+..+++++ +
T Consensus 98 ~~~L~~L~~~g~~~~i~Sn~~~~-~~~~~l~~~g-l~~~fd~i~~s-----~~~~------~~KP~~~~~~~~~~~~~~~ 164 (198)
T TIGR01428 98 PAGLRALKERGYRLAILSNGSPA-MLKSLVKHAG-LDDPFDAVLSA-----DAVR------AYKPAPQVYQLALEALGVP 164 (198)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHH-HHHHHHHHCC-ChhhhheeEeh-----hhcC------CCCCCHHHHHHHHHHhCCC
Confidence 45667788899999999876432 2222211100 00012211110 0000 0011123345555554 3
Q ss_pred C-CE-EEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 103 P-NC-LVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 103 ~-d~-vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
+ +| +|-|.. +-...|++.|+..+.+.
T Consensus 165 p~~~~~vgD~~--~Di~~A~~~G~~~i~v~ 192 (198)
T TIGR01428 165 PDEVLFVASNP--WDLGGAKKFGFKTAWVN 192 (198)
T ss_pred hhhEEEEeCCH--HHHHHHHHCCCcEEEec
Confidence 3 45 566664 55677999999988654
No 292
>PRK06849 hypothetical protein; Provisional
Probab=27.79 E-value=1.6e+02 Score=24.66 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=26.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+|++.- -+ ..--+++++.|.++|++|.++....
T Consensus 4 ~~~VLI~G---~~-~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITG---AR-APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeC---CC-cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45677763 22 2357899999999999999997764
No 293
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=27.67 E-value=80 Score=27.20 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=49.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch----HHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA----TLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSEN 84 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~----~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~ 84 (189)
++.++..|+. ...+++.|.+-|.+|..+.|.... +....... .+. .....+
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~------------~~~-----~~v~~~--- 341 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLE------------MLG-----VEVKYR--- 341 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHH------------hcC-----CCceec---
Confidence 6777776665 677788888889988887665321 11111100 000 000000
Q ss_pred ccCCCCCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEE
Q 042879 85 LNEMTSQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLV 128 (189)
Q Consensus 85 ~~~~~~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 128 (189)
.++ .+.+ +.+++.++|++|... -...+|+++|||.+.
T Consensus 342 -~dl--~~~~-~~l~~~~pDllig~s---~~~~~A~k~gIP~vr 378 (422)
T TIGR02015 342 -ASL--EDDM-EAVLEFEPDLAIGTT---PLVQFAKEHGIPALY 378 (422)
T ss_pred -cCH--HHHH-HHHhhCCCCEEEcCC---cchHHHHHcCCCEEE
Confidence 000 0111 444556999999873 356789999999877
No 294
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=27.42 E-value=65 Score=29.97 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCEEEeCCCcch--HHHHHHHhCCCeEEEechhH
Q 042879 102 KPNCLVADMLFPW--ATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 102 ~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a 134 (189)
-+|++|+|.-+.. ...+|+++|.+.|.+.+-..
T Consensus 265 ~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 265 IADVVVVDEQCIRADILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred CCcEEEEecccCcccHHHHHHHhCCCEEEechhhh
Confidence 5899999997764 57999999999999887544
No 295
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=27.35 E-value=2.4e+02 Score=20.98 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcC-
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHK- 102 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~- 102 (189)
..++.++|.++|+.+.++|...... +...+.... -...+..+.. .+... ..-+..+.+..++++++
T Consensus 80 ~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~~-l~~~f~~i~~-----~~~~~------~~KP~~~~~~~~~~~~~~ 146 (205)
T TIGR01454 80 VPELLAELRADGVGTAIATGKSGPR-ARSLLEALG-LLPLFDHVIG-----SDEVP------RPKPAPDIVREALRLLDV 146 (205)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHcC-ChhheeeEEe-----cCcCC------CCCCChHHHHHHHHHcCC
Confidence 4566777888999999998764332 222211100 0001121110 00000 00111234556666653
Q ss_pred -C-CE-EEeCCCcchHHHHHHHhCCCeEEE
Q 042879 103 -P-NC-LVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 103 -~-d~-vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
+ +| +|-|. ..-...|++.|++.+..
T Consensus 147 ~~~~~l~igD~--~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 147 PPEDAVMVGDA--VTDLASARAAGTATVAA 174 (205)
T ss_pred ChhheEEEcCC--HHHHHHHHHcCCeEEEE
Confidence 3 34 56664 35678899999998765
No 296
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=27.28 E-value=1.4e+02 Score=25.30 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=21.8
Q ss_pred hhcCCCE-EEeCC--CcchHHHHHHHhCCC--eEEEec
Q 042879 99 QEHKPNC-LVADM--LFPWATDAAAKFGIP--RLVFHG 131 (189)
Q Consensus 99 ~~~~~d~-vI~D~--~~~~~~~vA~~lgiP--~v~f~~ 131 (189)
.+.+||+ |..|+ |......-+++.|++ .+.|.+
T Consensus 79 ~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~ 116 (373)
T PF02684_consen 79 KEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS 116 (373)
T ss_pred HHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC
Confidence 3348997 56786 555566777899998 444433
No 297
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.24 E-value=1.3e+02 Score=23.30 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=15.6
Q ss_pred HHHHHHHhhCCCeEEEEe
Q 042879 25 VDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t 42 (189)
..+|++|+++|++|.+..
T Consensus 23 ~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 23 WGCAQAIKDQGATVIYTY 40 (252)
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 789999999999988763
No 298
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.18 E-value=78 Score=27.19 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=27.2
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
.+.+++++.++|++|.... ...+|+++|||...+.
T Consensus 360 e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3556777779999998875 5678999999997554
No 299
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=27.08 E-value=64 Score=26.67 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHhhCCCeEEEEeC
Q 042879 25 VDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~ 43 (189)
-+.|++||.||.+|.++.=
T Consensus 63 KayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 4689999999999887763
No 300
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=26.80 E-value=1.2e+02 Score=23.89 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=31.2
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
+++..-+|.|.-.-...+|..++++|.+|-++.++..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3445567889999999999999999999999988754
No 301
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=26.57 E-value=81 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=21.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+|.++-.-+.| ..+|..|+++||+|+++.-
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 45666444334 3478889999999999986
No 302
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=26.53 E-value=1.8e+02 Score=19.73 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=25.8
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
|++++- ..|.-.-+..+++.|+++|+.|..+.....
T Consensus 2 vv~~HG-~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 37 (145)
T PF12695_consen 2 VVLLHG-WGGSRRDYQPLAEALAEQGYAVVAFDYPGH 37 (145)
T ss_dssp EEEECT-TTTTTHHHHHHHHHHHHTTEEEEEESCTTS
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 344443 334566789999999999999888865543
No 303
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=26.27 E-value=88 Score=25.03 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=22.5
Q ss_pred CCE-EEeCCCcc-hHHHHHHHhCCCeEEEechh
Q 042879 103 PNC-LVADMLFP-WATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 103 ~d~-vI~D~~~~-~~~~vA~~lgiP~v~f~~~~ 133 (189)
||+ +|.|.-.- -+..=|+++|||++.+.-++
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 886 57776543 24566889999999987655
No 304
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=26.26 E-value=1.7e+02 Score=19.68 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCHHHhhhhcCCCEEEeCCCcchH--HHHHHHhCCCeE
Q 042879 92 PDMPVNLQEHKPNCLVADMLFPWA--TDAAAKFGIPRL 127 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v 127 (189)
+.++++++...+|+||.|--.+.. ..+.+.+|++++
T Consensus 47 eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 47 EEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 456677777789999999876655 377888888764
No 305
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=26.03 E-value=1.5e+02 Score=23.38 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=29.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.|.+..=.|.|.-.-...||..|+.+|.+|-++-..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 355565567799999999999999999999888654
No 306
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.01 E-value=1.1e+02 Score=24.74 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=36.1
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~ 51 (189)
+|+++-..+.|=+.-...+.+.|.++ +.+||+++.+.+..-++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 57888888889999999999999986 99999999876654443
No 307
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=25.98 E-value=53 Score=22.58 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=22.7
Q ss_pred cCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 14 PLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 14 p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
-+||+|+++=-.+|++++.+.| ++|+.+.
T Consensus 78 i~pGyg~lse~~~fa~~~~~~g--i~fiGp~ 106 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAG--IIFIGPS 106 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT---EESSS-
T ss_pred cccccchhHHHHHHHHHHHHCC--CEEECcC
Confidence 3689999999999999999877 5666543
No 308
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=25.97 E-value=90 Score=27.06 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 20 HMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 20 H~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
|+..|.+++.+|.++|++|++.....
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 46789999999999999999988776
No 309
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=25.87 E-value=1e+02 Score=21.87 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=35.8
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
+..+-+.|..|.+.+.|.-++.++|.+.-.++.++|+...
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 5688899999999999999999999998899999998654
No 310
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=25.81 E-value=2e+02 Score=21.97 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=35.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~~ 51 (189)
-+++...|+.|--.-.++++..++.+ |..|.+++.+.....+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 45667778999999999999999887 99999999987665443
No 311
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.77 E-value=2.7e+02 Score=21.31 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=35.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
.-+++.-.||.|.-.-..+++...+.+|..|.++++......+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 3567778899999999999998888899999999998765544
No 312
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.76 E-value=81 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=25.0
Q ss_pred HHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 95 PVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 95 ~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
.+.+++.++|++|... +...+|+++|||.+-.
T Consensus 380 ~~~i~~~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 380 EEILEKLKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHhcCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 3455666899999765 5678999999999864
No 313
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.67 E-value=1.6e+02 Score=22.27 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=33.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|.+--.||.|--.-...++..|.++|++|-=+.++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 56899999999999999999999999999998755544
No 314
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=25.57 E-value=2.8e+02 Score=20.52 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhc--
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEH-- 101 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~-- 101 (189)
+.++.+.|.++|+.+.++|..... .+...+.... -...+..+.- .+... ..-+..+.+..+++..
T Consensus 90 ~~~~L~~l~~~g~~~~i~S~~~~~-~~~~~l~~~~-l~~~f~~~~~-----~~~~~------~~Kp~p~~~~~~~~~~~~ 156 (213)
T TIGR01449 90 VEATLGALRAKGLRLGLVTNKPTP-LARPLLELLG-LAKYFSVLIG-----GDSLA------QRKPHPDPLLLAAERLGV 156 (213)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHH-HHHHHHHHcC-cHhhCcEEEe-----cCCCC------CCCCChHHHHHHHHHcCC
Confidence 456667788899999999876432 2222221100 0001111100 00000 0011123455666655
Q ss_pred CC-CE-EEeCCCcchHHHHHHHhCCCeEEEe
Q 042879 102 KP-NC-LVADMLFPWATDAAAKFGIPRLVFH 130 (189)
Q Consensus 102 ~~-d~-vI~D~~~~~~~~vA~~lgiP~v~f~ 130 (189)
++ +| +|-|. ......|++.|++.+.+.
T Consensus 157 ~~~~~~~igDs--~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 157 APQQMVYVGDS--RVDIQAARAAGCPSVLLT 185 (213)
T ss_pred ChhHeEEeCCC--HHHHHHHHHCCCeEEEEc
Confidence 33 34 56675 357788999999998764
No 315
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=25.50 E-value=1.7e+02 Score=24.32 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=24.7
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
++++|++.- +-|.+ =.+|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVtG--gtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICITG--AGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEEC--CccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 356788764 33443 45789999999999998863
No 316
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=25.46 E-value=1.2e+02 Score=22.82 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=25.5
Q ss_pred CCcChHH-HHHHHHHHhh-CCCeEEEEeCCcchH
Q 042879 17 AHGHMIP-LVDMAKLFGS-RGVKTTVITTPANAT 48 (189)
Q Consensus 17 ~~GH~~P-~l~La~~La~-~G~~Vt~~t~~~~~~ 48 (189)
|.||... ..++.+.|.+ +|++|.++.|+.-..
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 4578866 8899999985 699999999986554
No 317
>PLN02778 3,5-epimerase/4-reductase
Probab=25.38 E-value=1.2e+02 Score=24.38 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=22.3
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
.+.+|++.-.-|. + =-.|+++|.++|++|++..
T Consensus 8 ~~~kiLVtG~tGf--i--G~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 8 ATLKFLIYGKTGW--I--GGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCeEEEECCCCH--H--HHHHHHHHHhCCCEEEEec
Confidence 3567887764443 3 2357888999999998643
No 318
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=25.37 E-value=82 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCeEEEEeCC
Q 042879 25 VDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|++|+++|++|++..-.
T Consensus 14 ~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp HHHHHHHHHTTTEEEEEESS
T ss_pred HHHHHHHHhcCCeEEeeccc
Confidence 46899999999999998743
No 319
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=25.20 E-value=73 Score=25.31 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=25.1
Q ss_pred cEEEEecCCCC-cChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 8 LHIIFFPLMAH-GHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 8 ~hvl~~p~p~~-GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
.+|+++.-+|- | -=-+-+|+.|+++|++|+++..
T Consensus 61 ~~V~VlcG~GNNG--GDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNG--GDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCc--hhHHHHHHHHHHCCCeEEEEEc
Confidence 47888876554 1 1236689999999999999874
No 320
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=25.18 E-value=1.9e+02 Score=23.32 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=24.9
Q ss_pred CCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 16 MAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 16 p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
.|.|--+-.++||-.|+..|++|-++-.+...+.+
T Consensus 10 GGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~ 44 (261)
T PF09140_consen 10 GGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSL 44 (261)
T ss_dssp TTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HH
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCH
Confidence 45688899999999999999999999877544433
No 321
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=25.13 E-value=1.5e+02 Score=23.23 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=20.3
Q ss_pred ccEEEEe-cCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 7 KLHIIFF-PLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 7 ~~hvl~~-p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
..+|+++ |.|--= ..-+-.-...++++|++|++++.
T Consensus 10 ~~~vL~v~aHPDDe-~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 10 PLRVLVVFAHPDDE-EIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred CCcEEEEecCCcch-hhccHHHHHHHHHCCCeEEEEEc
Confidence 3455444 444321 12233444556889999999764
No 322
>PRK07077 hypothetical protein; Provisional
Probab=24.97 E-value=72 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCCEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 102 KPNCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 102 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
.++++..|+=......+|++.|||++.+-..+
T Consensus 135 ~~gA~aVDMEsaAvA~va~~~giPf~viR~IS 166 (238)
T PRK07077 135 ATGALAVDMESHIAAAFAAARGLPFAACRVIV 166 (238)
T ss_pred hCCCEEEehhHHHHHHHHHHcCCCEEEEEEEE
Confidence 57999999877677899999999999987665
No 323
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=24.96 E-value=1.8e+02 Score=21.86 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=25.3
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+.+-|++++- ..|--.-+..+|.+|+++|+.|.+.-.
T Consensus 13 ~~~~Vvv~~d-~~G~~~~~~~~ad~lA~~Gy~v~~pD~ 49 (218)
T PF01738_consen 13 PRPAVVVIHD-IFGLNPNIRDLADRLAEEGYVVLAPDL 49 (218)
T ss_dssp SEEEEEEE-B-TTBS-HHHHHHHHHHHHTT-EEEEE-C
T ss_pred CCCEEEEEcC-CCCCchHHHHHHHHHHhcCCCEEeccc
Confidence 3456666653 568778888999999999988876543
No 324
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=24.92 E-value=2.8e+02 Score=20.18 Aligned_cols=63 Identities=8% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeC
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKF 71 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 71 (189)
+...+|++|.....+|+.-.+++.+.+... .+.+.+..-.-....+...-. ...++++..+++
T Consensus 57 ~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~----~~~n~evr~Fn~ 121 (142)
T PF07801_consen 57 KNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKK----NFCNVEVRKFNF 121 (142)
T ss_pred ccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHh----cCCceEEEECCC
Confidence 345699999999999999999999999886 577888777665555443311 114677777753
No 325
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=24.88 E-value=1.2e+02 Score=23.64 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCCcCh-HHHHHHHHHHhhC--CCeEEEEeCCcchHH
Q 042879 16 MAHGHM-IPLVDMAKLFGSR--GVKTTVITTPANATL 49 (189)
Q Consensus 16 p~~GH~-~P~l~La~~La~~--G~~Vt~~t~~~~~~~ 49 (189)
-|.|+. .=..+|.++|.++ |++|.++.|..-...
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~ 43 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEV 43 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhH
Confidence 355666 5788999999998 999999998754433
No 326
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=24.76 E-value=52 Score=23.79 Aligned_cols=17 Identities=12% Similarity=0.338 Sum_probs=15.1
Q ss_pred CCCcChHHHHHHHHHHh
Q 042879 16 MAHGHMIPLVDMAKLFG 32 (189)
Q Consensus 16 p~~GH~~P~l~La~~La 32 (189)
|-+|-.||+++|+-.|+
T Consensus 57 pe~G~tNPFLHlsmHLs 73 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLS 73 (137)
T ss_pred cccCccchhHHHHHHHH
Confidence 67899999999998886
No 327
>PLN02316 synthase/transferase
Probab=24.72 E-value=78 Score=30.75 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=29.6
Q ss_pred CccEEEEecC---C--CCcChH-HHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 6 RKLHIIFFPL---M--AHGHMI-PLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 6 ~~~hvl~~p~---p--~~GH~~-P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
...||+++.. | -.|-+. -+-.|+++|+.+||+|.+++....
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 3468888763 2 124443 447899999999999999998643
No 328
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=24.63 E-value=87 Score=24.32 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=22.2
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
=+++|.-|.||= +..|+++||+|+=+-..
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvDls 68 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVDLS 68 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEES-
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEecC
Confidence 467799999987 56678999999877544
No 329
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.63 E-value=80 Score=24.79 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=25.9
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEech
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 132 (189)
+.+++.++.||+++..... +..+|++.|++.+.+.+.
T Consensus 193 ~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 193 KLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 4455558999999987664 458899999999877665
No 330
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.58 E-value=1.4e+02 Score=21.06 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=19.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+++++ +-|.+.|.++- |.++|.+|.++...
T Consensus 102 ~ivLvS--gD~Df~~~i~~---lr~~G~~V~v~~~~ 132 (149)
T cd06167 102 TIVLVS--GDSDFVPLVER---LRELGKRVIVVGFE 132 (149)
T ss_pred EEEEEE--CCccHHHHHHH---HHHcCCEEEEEccC
Confidence 555555 56766665544 44558888888776
No 331
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.42 E-value=1.4e+02 Score=20.40 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=24.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
...+.++.+... +...++.++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 346777775444 34567888888888888888654
No 332
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=24.39 E-value=2.1e+02 Score=21.48 Aligned_cols=35 Identities=26% Similarity=0.146 Sum_probs=30.3
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEE
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVI 41 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~ 41 (189)
+.-|.++.-.|.|-..-.+.+|-+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34677788899999999999999999999999654
No 333
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.30 E-value=1.4e+02 Score=23.64 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=35.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~ 51 (189)
+|+++-.-+.|=+.-+..+.+.|.++ +.+|++++...+...++
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 57888888899999999999999986 58999999986654443
No 334
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=24.12 E-value=1.7e+02 Score=22.30 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=34.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHh-hCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFG-SRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La-~~G~~Vt~~t~~~ 45 (189)
..|++++-.-|.|--+-+..|.+++. .+|..|.++-...
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 35999999999999999999999999 7888888876654
No 335
>PRK05541 adenylylsulfate kinase; Provisional
Probab=23.88 E-value=2.5e+02 Score=20.32 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=33.2
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
|....+..-|++.-.+|.|--.-.-.|+++|..+|..+.++.
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 555555668899999999999888889999987777776664
No 336
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=23.87 E-value=1.6e+02 Score=23.14 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=26.0
Q ss_pred CCHHHhhhhcCCCEEEeCCC--cchHHHHHHHhCCCeEEEechhH
Q 042879 92 PDMPVNLQEHKPNCLVADML--FPWATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~--~~~~~~vA~~lgiP~v~f~~~~a 134 (189)
.++++++ +++||+||.... .....+--++.|||++.+...+.
T Consensus 63 ~n~E~il-~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~ 106 (260)
T PRK03379 63 MNLERIV-ALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSI 106 (260)
T ss_pred CCHHHHH-hcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCH
Confidence 3454444 458999997532 22233444689999999875443
No 337
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=23.81 E-value=1.3e+02 Score=18.90 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=19.8
Q ss_pred cCCCEEEeCCCcchHHHHH--HHhCCCeEEEechh
Q 042879 101 HKPNCLVADMLFPWATDAA--AKFGIPRLVFHGTS 133 (189)
Q Consensus 101 ~~~d~vI~D~~~~~~~~vA--~~lgiP~v~f~~~~ 133 (189)
.++++++.|.+......|+ +..|.-++.++..+
T Consensus 25 ~~~~v~~iD~~~~~~~~I~~L~~~G~~vicY~s~G 59 (74)
T PF03537_consen 25 PDVDVVVIDLFDFSKEEIARLKAQGKKVICYFSIG 59 (74)
T ss_dssp SS-SEEEE-SBS--HHHHHHHHHTT-EEEEEEESS
T ss_pred CCCCEEEECCccCCHHHHHHHHHCCCEEEEEEeCc
Confidence 3799999999987655555 56787777666544
No 338
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=23.79 E-value=1.6e+02 Score=22.43 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=21.4
Q ss_pred hhhhcCCCEEEeC----CCcchHHHHHHHh-----CCCeEEEech
Q 042879 97 NLQEHKPNCLVAD----MLFPWATDAAAKF-----GIPRLVFHGT 132 (189)
Q Consensus 97 ll~~~~~d~vI~D----~~~~~~~~vA~~l-----giP~v~f~~~ 132 (189)
.+++.+|||||.| .-...+.++.+++ +++.++|...
T Consensus 42 ~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 42 ACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 3444479999999 3233344454433 4677777654
No 339
>PRK12377 putative replication protein; Provisional
Probab=23.71 E-value=1.5e+02 Score=23.59 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=31.2
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
..+++.-.||-|--.=+..+++.|..+|..|.+++.......+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 3577777788887777888888888888888777765444333
No 340
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=23.64 E-value=85 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=23.5
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|.++-.-..| ..+|..|+++||+|+++.-.
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 367777554444 34788899999999998753
No 341
>PRK14098 glycogen synthase; Provisional
Probab=23.62 E-value=84 Score=27.52 Aligned_cols=39 Identities=3% Similarity=0.154 Sum_probs=28.5
Q ss_pred ccEEEEecC-----CCC-cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPL-----MAH-GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~-----p~~-GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+|+++.. .=. |=-.-+-.|.|+|+++||+|.++.+.-
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 467887653 111 444667789999999999999998853
No 342
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=23.61 E-value=1.8e+02 Score=22.87 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=28.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.|.++.=.|.|--+-...||..|+++|++|-++-.+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 355565566788899999999999999999888544
No 343
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=23.55 E-value=1.1e+02 Score=24.99 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 20 HMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 20 H~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.+-++++|.+.|.++|+.|.++|.-..
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 355899999999999999999998654
No 344
>PLN02828 formyltetrahydrofolate deformylase
Probab=23.52 E-value=1.3e+02 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=27.4
Q ss_pred CCHHHhhhhc-------CCCEEEeCCC---cchHHHHHHHhCCCeEEEec
Q 042879 92 PDMPVNLQEH-------KPNCLVADML---FPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 92 ~~l~~ll~~~-------~~d~vI~D~~---~~~~~~vA~~lgiP~v~f~~ 131 (189)
..+.+++... .+.+||++-- ...+...|+++|||.+.+..
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 3466666543 3567888862 22467899999999986654
No 345
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=23.50 E-value=1.3e+02 Score=21.35 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=24.2
Q ss_pred EEecCCCCcChHHHHHHHHHHhhC-CCeEEE
Q 042879 11 IFFPLMAHGHMIPLVDMAKLFGSR-GVKTTV 40 (189)
Q Consensus 11 l~~p~p~~GH~~P~l~La~~La~~-G~~Vt~ 40 (189)
+.++.=...|..-+++||..|.+. |++|.+
T Consensus 5 I~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 5 ISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 344444558999999999999998 998885
No 346
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=23.48 E-value=2.9e+02 Score=19.89 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCH
Q 042879 17 AHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDM 94 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l 94 (189)
.-+.-.-+++++++|.+. |+++ +.|......+... .++.+..+ . . + +.+ ..+.+
T Consensus 12 ~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~v-i---~-~-~~g--------g~~~i 67 (142)
T PRK05234 12 HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRL-L---S-G-PLG--------GDQQI 67 (142)
T ss_pred eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEE-E---c-C-CCC--------CchhH
Confidence 456677899999999998 9985 4555555555432 13443333 1 0 1 111 12345
Q ss_pred HHhhhhcCCCEEEe--CCCcc--------hHHHHHHHhCCCeEEEechh
Q 042879 95 PVNLQEHKPNCLVA--DMLFP--------WATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 95 ~~ll~~~~~d~vI~--D~~~~--------~~~~vA~~lgiP~v~f~~~~ 133 (189)
.+++++-++++||. |.... .....|-+.|||++.-..+.
T Consensus 68 ~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA 116 (142)
T PRK05234 68 GALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATA 116 (142)
T ss_pred HHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHH
Confidence 67777668998887 43321 12356889999987654433
No 347
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=23.42 E-value=2.7e+02 Score=19.48 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.5
Q ss_pred cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHH
Q 042879 14 PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATL 49 (189)
Q Consensus 14 p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~ 49 (189)
|.++.|=-.-.+.||+.|+++|.+|-++-.......
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~ 43 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS 43 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 467778888999999999999999888877655443
No 348
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=23.33 E-value=1.1e+02 Score=23.22 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=29.2
Q ss_pred ccEEEEecCCCCcCh-HHHHHHHHHHhhCCCeEEEEe
Q 042879 7 KLHIIFFPLMAHGHM-IPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~-~P~l~La~~La~~G~~Vt~~t 42 (189)
.--+++.++|+.=|+ -|..+++..|...|..+..+.
T Consensus 33 ~eV~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 33 NDVVAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred CCEEEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 346777888999998 599999999999998765554
No 349
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=23.31 E-value=1.3e+02 Score=19.88 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=31.0
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+++++..||-|.-.-+..+++.+...+..+.++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 458899999999999999999999888765565555543
No 350
>PRK00889 adenylylsulfate kinase; Provisional
Probab=23.23 E-value=2.1e+02 Score=20.79 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=31.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.-|++.-.+|.|--.-...|++.|...|.++.++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 3677888899999999999999998889999888765
No 351
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=23.17 E-value=83 Score=25.03 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
|--.-+.+|++.|+++|+.|++++....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4445579999999999999999987643
No 352
>PRK04148 hypothetical protein; Provisional
Probab=23.08 E-value=93 Score=22.35 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=22.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.+++.+-.. .| ..+|+.|++.|++|+.+-....
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHH
Confidence 467766543 33 3468888899999998876543
No 353
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=23.05 E-value=3.2e+02 Score=20.72 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=35.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSK 52 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~ 52 (189)
-+++.--||.|--.=.++++..-+.+|..|.++++......+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 45666678999988889999888888999999999877665543
No 354
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.98 E-value=1e+02 Score=22.50 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
.+|+++- .|.+ -...++.|.+.|++||++..
T Consensus 14 ~~vlVvG---GG~v--a~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIG---GGKI--AYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEEC---CCHH--HHHHHHHHHhCCCEEEEEcC
Confidence 4666653 4544 37788999999999999953
No 355
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=22.95 E-value=76 Score=24.82 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCc
Q 042879 23 PLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
++++|.+.+.++|..|.|+|.-.
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~ 141 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRP 141 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCC
Confidence 38899999999999999999743
No 356
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=22.82 E-value=5.7e+02 Score=25.01 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=50.9
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhh
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNL 98 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll 98 (189)
..=.-+++++++|.+.|+++ +.|......+... ++....+... .++ .+.+.+++
T Consensus 947 ~~k~~~~~~~~~l~~~g~~~--~at~gta~~l~~~---------gi~~~~~~~~------~~~---------~~~~~~~i 1000 (1050)
T TIGR01369 947 KDKEELLDLARKLAEKGYKL--YATEGTAKFLGEA---------GIKPELVLKV------SEG---------RPNILDLI 1000 (1050)
T ss_pred CchHHHHHHHHHHHHCCCEE--EEechHHHHHHHC---------CCceEEEeec------CCC---------CccHHHHH
Confidence 34556888888888888765 3344444444432 2443333211 111 14566888
Q ss_pred hhcCCCEEEeCCCc--------chHHHHHHHhCCCeEE
Q 042879 99 QEHKPNCLVADMLF--------PWATDAAAKFGIPRLV 128 (189)
Q Consensus 99 ~~~~~d~vI~D~~~--------~~~~~vA~~lgiP~v~ 128 (189)
++-++|+||...-- .+....|-++|||.++
T Consensus 1001 ~~~~i~lvin~~~~~~~~~~~g~~iRr~Ai~~~ip~~t 1038 (1050)
T TIGR01369 1001 KNGEIELVINTTSKGAGTATDGYKIRREALDYGVPLIT 1038 (1050)
T ss_pred HcCCeEEEEECCCCCcccccccHHHHHHHHHcCCCEEe
Confidence 87789999986531 2345778899999984
No 357
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=22.74 E-value=2.3e+02 Score=21.85 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=22.9
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
..+|+++-.. |. --..++++|+++|++|+.++-
T Consensus 17 ~~~ilItGas--G~--iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGAT--GR--TGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCC--cH--HHHHHHHHHHhCCCEEEEEec
Confidence 4577776633 32 245688899999999987653
No 358
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.73 E-value=84 Score=27.36 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=26.1
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
+.+.+++.++|++|... +...+|+++|||.+-.
T Consensus 387 ~~~~i~~~~pDllig~~---~~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 387 LEEIIEKYKPDIILTGI---REGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHhcCCCEEEecC---CcchhhhhcCCCEEEc
Confidence 44666777999999775 4578999999999874
No 359
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=22.72 E-value=1.6e+02 Score=22.38 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=29.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhh-CCCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGS-RGVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~-~G~~Vt~~t~~~~~~~~~ 51 (189)
+|++.-..+.| ..=..+|+++|.+ .|++|.++.|+.-...+.
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 45554444444 6668999999998 499999999986554443
No 360
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.68 E-value=2.2e+02 Score=22.17 Aligned_cols=34 Identities=12% Similarity=-0.067 Sum_probs=23.5
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
.+++++.-.+.|.= ==.++|++|+++|++|.+..
T Consensus 8 ~k~~lITGas~~~G-IG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 8 GKKGLITGIANNMS-ISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CcEEEEECCCCCcc-hHHHHHHHHHHcCCEEEEEe
Confidence 46777776654210 23578899999999988764
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.58 E-value=2.7e+02 Score=24.09 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=32.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
-++++-..|.|--.-+..||..+..+|++|.+++++...
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 456666678899999999999998899999999988653
No 362
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.57 E-value=96 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=21.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
++++.- +-|.+ -.++++.|+++|++|+++.-.
T Consensus 7 ~vlItG--asg~i--G~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 7 VAIVTG--ASSGI--GEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEEEC--CCChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 455543 33433 368999999999998877654
No 363
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=22.54 E-value=2.9e+02 Score=21.96 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.9
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
+.|++.-.-.|.|--.....||..|+.+|.+|.++-+....
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 34555556678899999999999999999999999776433
No 364
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=22.38 E-value=91 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCeEEEEeCCc
Q 042879 25 VDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~ 45 (189)
.+|..+|...||+||+++=..
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 357788888999999998654
No 365
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.34 E-value=1.4e+02 Score=23.09 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=33.9
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+++++.+.+....|..-+.++.++|.+.|.++.++...
T Consensus 137 ~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG 176 (213)
T cd02069 137 EHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGG 176 (213)
T ss_pred HcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 3478999999998999999999999999988888776654
No 366
>PF12846 AAA_10: AAA-like domain
Probab=22.28 E-value=1.8e+02 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=34.6
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.|++++-.+|.|--.-+..+.+.+..+|..|.++-....
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 599999999999999999999999999999988855433
No 367
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=22.26 E-value=2.2e+02 Score=21.70 Aligned_cols=46 Identities=7% Similarity=-0.068 Sum_probs=35.6
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHHhhh
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLFSKA 53 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~~~~ 53 (189)
.-+++.-.||.|--.=.++++.+-+.+ |..|.++++......+...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 467888889999999999999888888 9999999998877655443
No 368
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=22.20 E-value=1.8e+02 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=27.3
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEech
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 132 (189)
+.+++.++.||+++..... +..+|++.|++.+.+-+.
T Consensus 246 ~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl 284 (311)
T PRK09545 246 TQLVEQKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPL 284 (311)
T ss_pred HHHHHcCCCEEEecCCCChHHHHHHHHhcCCeEEEeccc
Confidence 3444458999999987764 468999999988776443
No 369
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=22.20 E-value=92 Score=24.97 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCCeEEEEeCC
Q 042879 25 VDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~ 44 (189)
+..|..|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 55788899999999999765
No 370
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.16 E-value=1.9e+02 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=28.0
Q ss_pred CHHHhhhhc---CCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 93 DMPVNLQEH---KPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 93 ~l~~ll~~~---~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
.+++.++++ ++++||.|.. +.+.|+++|++.+.....
T Consensus 133 e~~~~~~~l~~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 133 DARSCVNDLRARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 344444443 8999999974 579999999999987764
No 371
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=21.83 E-value=1.7e+02 Score=23.93 Aligned_cols=31 Identities=6% Similarity=-0.070 Sum_probs=22.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
.+|++.-. -|.+ -..|+++|+++|++|+.+.
T Consensus 5 k~ilItGa--tG~I--G~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGH--TGFK--GSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred CEEEEECC--CChh--HHHHHHHHHHCCCEEEEEe
Confidence 35666553 3433 2678999999999998775
No 372
>PRK13768 GTPase; Provisional
Probab=21.78 E-value=2e+02 Score=22.66 Aligned_cols=37 Identities=8% Similarity=0.238 Sum_probs=31.4
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
-+++...+|.|--+-...++..|+.+|.+|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4667777888999989999999999999999997653
No 373
>PRK10490 sensor protein KdpD; Provisional
Probab=21.78 E-value=1.6e+02 Score=28.11 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=34.6
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+.+|.+=-.||.|--.-|++=|++|.++|++|.+-..+
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 3567999999999999999999999999999999874433
No 374
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=21.77 E-value=1.9e+02 Score=19.11 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=24.0
Q ss_pred hhhhc-CCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechhHHH
Q 042879 97 NLQEH-KPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTSFLS 136 (189)
Q Consensus 97 ll~~~-~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~a~~ 136 (189)
.+++. .+|+||.|..++. +..+++++ .+| +++.+.....
T Consensus 45 ~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p-vv~~t~~~~~ 91 (130)
T COG0784 45 LLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIP-VILLTAYADE 91 (130)
T ss_pred HHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC-EEEEEcCcCH
Confidence 34444 3999999998883 44444433 588 4555555443
No 375
>PRK06526 transposase; Provisional
Probab=21.73 E-value=91 Score=24.81 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=31.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
...++++-.+|-|--.=...++.++..+|++|-|.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~ 135 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence 45788888889988888888999999999998776554
No 376
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=21.73 E-value=1.6e+02 Score=23.80 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=34.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANAT 48 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~ 48 (189)
||+++-.-+.|=+.=...+.+.|.++ +.+||+++.+.+..
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 79999999999999888999999885 99999999876544
No 377
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=21.71 E-value=2.4e+02 Score=20.16 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=31.1
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+.-.+|.|--+.+..+++.+..+|.+|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 566777888999999999999999999999987663
No 378
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=21.61 E-value=2.1e+02 Score=22.57 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.7
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.|--.-|.+|+++|.++|.+|.+-||...
T Consensus 8 gGKTtl~~~l~~~~~~~g~~v~~TTTT~m 36 (232)
T TIGR03172 8 GGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEECCccc
Confidence 68888999999999999999999888754
No 379
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.57 E-value=2.2e+02 Score=24.63 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=32.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHh--hCCCeEEEEeCCcch
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFG--SRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La--~~G~~Vt~~t~~~~~ 47 (189)
.++|+-..|.|--.-...||.+++ ..|.+|.+++++...
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 566777788899999999999998 468999999998753
No 380
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.44 E-value=1.4e+02 Score=21.12 Aligned_cols=25 Identities=4% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 23 PLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
...+..++|.++|+.|+++|.-...
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 5566777777899999999976543
No 381
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=21.34 E-value=2e+02 Score=20.75 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=27.3
Q ss_pred cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 14 PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 14 p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+-+|.|--.-...||..|+++|++|.++-.+.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34677999999999999999999999987653
No 382
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=21.21 E-value=3.6e+02 Score=20.10 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=35.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc-chHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA-NATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~-~~~~~~ 51 (189)
-+.+.-.||.|--.=.++++...+.+|.+|.++.++. ...++.
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~ 57 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFK 57 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHH
Confidence 5677778899999999999999998999999999985 333443
No 383
>PRK15043 transcriptional regulator MirA; Provisional
Probab=21.16 E-value=1.7e+02 Score=23.27 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=25.5
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..++++.+++... .-+.=-|..|.+.|++|+++..+-
T Consensus 163 ~~~Ll~~~~~~~~-~~lwl~a~~l~~~g~~v~vl~~~~ 199 (243)
T PRK15043 163 KDALVVGWNIHDT-TRLWLEGWIASQQGWRIDVLAHSL 199 (243)
T ss_pred CCEEEEeCCCCCc-HHHHHHHHHHhcCCceEEEeCCcc
Confidence 4789999887772 233334556667899999987653
No 384
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.15 E-value=1.9e+02 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHhhhhcCCCEEEeCCCcch----------HHHHHHHhCCCeEEEe
Q 042879 94 MPVNLQEHKPNCLVADMLFPW----------ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 130 (189)
+.+++++.++|++|+-.-+.. +..|.+++|||.+.-.
T Consensus 68 i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 68 VLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 345666679999999875541 2245678999998755
No 385
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=21.08 E-value=3e+02 Score=23.82 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=32.5
Q ss_pred CccEEEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 6 RKLHIIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 6 ~~~hvl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+-|+++|- .+.||=-=+++|+.++.++|+++.+++.-.
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 3577888886 555888888999999999999999987643
No 386
>PRK07952 DNA replication protein DnaC; Validated
Probab=21.07 E-value=1.8e+02 Score=22.99 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=31.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
.+++.-.+|-|--.=...+++.|..+|..|.+++.....
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 577777788888888889999999899999888765433
No 387
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=21.06 E-value=2.2e+02 Score=22.19 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=30.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.|.++.=.|.|--+-...||..|+++|++|-++-...
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4666655677999999999999999999999986553
No 388
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=21.05 E-value=1e+02 Score=26.29 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=21.3
Q ss_pred cChHHHHH---HHHHHhhCCCeEEEEeCCcc
Q 042879 19 GHMIPLVD---MAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 19 GH~~P~l~---La~~La~~G~~Vt~~t~~~~ 46 (189)
||+.|++. ++|.+..+|++|-+++....
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 99988774 77888889999999986543
No 389
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=21.01 E-value=1.1e+02 Score=24.71 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=23.2
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
||+.+.+...++|.+.|+++.++....
T Consensus 15 G~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 15 GHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 999998888889988899998887654
No 390
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=21.01 E-value=1.2e+02 Score=26.46 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=23.1
Q ss_pred HhhhhcCCCEEEeCCCcchHHHHHHHhCCCeE
Q 042879 96 VNLQEHKPNCLVADMLFPWATDAAAKFGIPRL 127 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 127 (189)
+.+++.++|++|... +...+|+++|||.+
T Consensus 391 ~~~~~~~pDliig~s---~~~~~A~klgiP~v 419 (461)
T TIGR01860 391 EVLDLIKPDVIFTGP---RVGELVKKLHIPYV 419 (461)
T ss_pred HHHHhcCCCEEEeCC---cchhhHhhcCCCEE
Confidence 445666899999875 45679999999997
No 391
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=20.94 E-value=1.9e+02 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=26.2
Q ss_pred HHHhhhhcCCCEEEeCCCcch----------HHHHHHHhCCCeEEEe
Q 042879 94 MPVNLQEHKPNCLVADMLFPW----------ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 130 (189)
+.+++++.++|++|+-.-+.. +..|.+++|||.+.-.
T Consensus 68 i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 68 VLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 345666679999999875541 2245678999998755
No 392
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=20.93 E-value=3e+02 Score=22.30 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=34.9
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
....|.+.-.+|.|--.-+..|+..+..+|.+|.++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34577888889999999999999999999999999887643
No 393
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=20.74 E-value=2.5e+02 Score=23.43 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=31.2
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..|.+..-+|.|--.-...||..|+++|.+|-++-...
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~ 69 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDP 69 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeee
Confidence 35566666778999999999999999999999986653
No 394
>PRK06101 short chain dehydrogenase; Provisional
Probab=20.63 E-value=1.1e+02 Score=23.38 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=16.2
Q ss_pred HHHHHHHhhCCCeEEEEeC
Q 042879 25 VDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~ 43 (189)
.+++++|+++|++|.++.-
T Consensus 15 ~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 15 KQLALDYAKQGWQVIACGR 33 (240)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 6789999999999888754
No 395
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.63 E-value=2.5e+02 Score=23.19 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=29.4
Q ss_pred ccEEEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.++|+++-. -+.|-+.-.+.|.+.|.++|.++.|+.|.
T Consensus 112 ~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 112 AKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 456666655 55699999999999999999999999886
No 396
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=20.63 E-value=3.7e+02 Score=20.01 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=29.4
Q ss_pred EEEEe-cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 9 HIIFF-PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~-p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
.|.+. +-.+.|--.-...||+.|+++|.+|.++-.....
T Consensus 19 vI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 19 VLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 34444 2356688889999999999999999998765433
No 397
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=20.61 E-value=96 Score=26.28 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=24.3
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
+--|++|.....|+-+-.-.+|..||++|+-|.-+-
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aie 134 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIE 134 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE-
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEec
Confidence 446788887777999999999999999998765543
No 398
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=20.61 E-value=2.1e+02 Score=22.44 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=27.3
Q ss_pred hhcCCCEEEeCCCcchH---HHHHHHhCCCeEEEechhHH
Q 042879 99 QEHKPNCLVADMLFPWA---TDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 99 ~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~~~~a~ 135 (189)
++...|+||.|.+.+.. ..+++..|+|++.-.+.-+-
T Consensus 175 ~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr 214 (221)
T PF07302_consen 175 AEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVAR 214 (221)
T ss_pred HhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHH
Confidence 33489999999887643 37788999999876554443
No 399
>PRK07454 short chain dehydrogenase; Provisional
Probab=20.59 E-value=1.1e+02 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-..++++|+++|++|+++.-.
T Consensus 19 G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 19 GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 567899999999998887643
No 400
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=20.56 E-value=2.7e+02 Score=21.88 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=29.3
Q ss_pred ccEEEEecC--CCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPL--MAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~--p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+++.+.. +|.|--.-...||..|+..|.+|-++-..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 345544443 66688888999999999999999998664
No 401
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=20.54 E-value=2.3e+02 Score=22.85 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=30.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+|.+.-=.|.|--+-...||..|+++|.+|.++-.+
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 366677678899999999999999999999888654
No 402
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=20.53 E-value=3e+02 Score=20.74 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=29.2
Q ss_pred EEEEec-CCCCcChHHHHHHHHHHhh-CCCeEEEEeCCcc
Q 042879 9 HIIFFP-LMAHGHMIPLVDMAKLFGS-RGVKTTVITTPAN 46 (189)
Q Consensus 9 hvl~~p-~p~~GH~~P~l~La~~La~-~G~~Vt~~t~~~~ 46 (189)
.|.+.. -.|.|--.-...||+.|+. +|.+|.++-....
T Consensus 37 vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 37 LIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 344443 3677999999999999997 6999999876643
No 403
>PLN02735 carbamoyl-phosphate synthase
Probab=20.49 E-value=7.9e+02 Score=24.31 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=51.0
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhh
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNL 98 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll 98 (189)
.+-.=+.++|++|.+.|+++ +.|......++.. ++....+... .++ .+.+.+++
T Consensus 982 ~~K~~~~~~a~~L~~lG~~i--~aT~GTa~~L~~~---------Gi~~~~v~~~--~~~-------------~~~~~~~i 1035 (1102)
T PLN02735 982 LTKPHLVPIARGFLELGFRI--VSTSGTAHFLELA---------GIPVERVLKL--HEG-------------RPHAGDML 1035 (1102)
T ss_pred CCchhHHHHHHHHHHCCCEE--EEccHHHHHHHHC---------CCceEEEeec--cCC-------------CccHHHHH
Confidence 34556788899998888765 4555544445432 3444333211 011 24567888
Q ss_pred hhcCCCEEEeCCCc--------chHHHHHHHhCCCeEE
Q 042879 99 QEHKPNCLVADMLF--------PWATDAAAKFGIPRLV 128 (189)
Q Consensus 99 ~~~~~d~vI~D~~~--------~~~~~vA~~lgiP~v~ 128 (189)
++.++|+||.-.-. +.....|-++|||.+.
T Consensus 1036 ~~~~i~~vin~~~~~~~~~~d~~~iRr~a~~~~ip~~t 1073 (1102)
T PLN02735 1036 ANGQIQLMVITSSGDALDQKDGRQLRRMALAYKVPIIT 1073 (1102)
T ss_pred HcCCeEEEEECCCCccccccccHHHHHHHHHcCCCEEe
Confidence 87789999874321 1234678899999984
No 404
>PRK06194 hypothetical protein; Provisional
Probab=20.40 E-value=1.1e+02 Score=24.14 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
-.+++++|+++|++|+++.-
T Consensus 19 G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 19 GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 46789999999999987754
No 405
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.38 E-value=1.1e+02 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-..++++|+++|++|.++.-.
T Consensus 20 G~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 20 GRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467889999999999887654
No 406
>PRK08181 transposase; Validated
Probab=20.34 E-value=1.7e+02 Score=23.52 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=28.6
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..++++-.+|-|--.=...+++++..+|+.|.|++...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD 144 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence 46778877888777667778888888888888777643
No 407
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=20.33 E-value=3.3e+02 Score=21.07 Aligned_cols=44 Identities=7% Similarity=-0.141 Sum_probs=36.5
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
.-+++.-.||.|.-.=.++++..-+.+|-.+.++++......+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~ 65 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVR 65 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHH
Confidence 46778888999999999999888778899999999987665543
No 408
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.29 E-value=2.3e+02 Score=19.14 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.2
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
..|.---+.+.++.+.++|..|..+|.....
T Consensus 56 ~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 56 NSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4577778999999999999999888876543
No 409
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=20.25 E-value=1.9e+02 Score=23.22 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=25.7
Q ss_pred CHHHhhhhcCCCEEEeCCCc-c-hHHHHHHHhCCCeEEEe
Q 042879 93 DMPVNLQEHKPNCLVADMLF-P-WATDAAAKFGIPRLVFH 130 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f~ 130 (189)
.+..++++.++|+|.+-... . .+..+++++|+|.+..+
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~ 112 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTF 112 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEE
Confidence 34456777799988764322 2 34577899999998743
No 410
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=20.24 E-value=2.4e+02 Score=22.88 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
...|-+--.||.|--.=.-+|+++|.++|++|-++..+...
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 45777888899999999999999999999999998876443
No 411
>PRK05634 nucleosidase; Provisional
Probab=20.21 E-value=1e+02 Score=23.26 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=24.1
Q ss_pred CEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 104 NCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 104 d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
++.+.|+=......+|+++|||++.+-..+
T Consensus 126 ~a~~vDME~aAva~va~~~~vPf~~iR~IS 155 (185)
T PRK05634 126 RADLVDMEGYAVAAVAAEFGVPCRLVKHVS 155 (185)
T ss_pred cCeEEecHHHHHHHHHHHhCCCEEEEEEec
Confidence 567788866667899999999999876654
No 412
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=20.20 E-value=2.4e+02 Score=22.13 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=28.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
-+-++-..+.|--.-+..|+++|..+|++|-++-
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3556666788999999999999999999999984
No 413
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=20.17 E-value=1.1e+02 Score=24.49 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
=+-+|..|+++|++|+++=-
T Consensus 13 Gl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 13 GLAAALALARAGIDVTIIER 32 (356)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHhcccccccchh
Confidence 35688889999999999854
No 414
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=20.05 E-value=2.6e+02 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=30.0
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.|.+..-.|.|--+-...||..|+++|.+|-++-..
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 555666677799999999999999999999998544
Done!