Query 042879
Match_columns 189
No_of_seqs 186 out of 1467
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 18:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 1.7E-30 5.9E-35 221.0 12.4 165 6-181 12-196 (454)
2 2acv_A Triterpene UDP-glucosyl 99.9 8.8E-25 3E-29 186.4 8.4 170 5-181 7-194 (463)
3 2pq6_A UDP-glucuronosyl/UDP-gl 99.9 4E-24 1.4E-28 183.0 10.5 173 1-181 1-205 (482)
4 2vch_A Hydroquinone glucosyltr 99.9 3.1E-23 1.1E-27 177.6 10.8 173 1-181 1-188 (480)
5 2c1x_A UDP-glucose flavonoid 3 99.9 6.5E-23 2.2E-27 174.6 12.3 170 1-180 1-192 (456)
6 2iya_A OLEI, oleandomycin glyc 99.7 4E-17 1.4E-21 136.7 11.6 115 6-134 11-141 (424)
7 4amg_A Snogd; transferase, pol 99.6 3.3E-15 1.1E-19 123.6 9.2 119 6-134 21-160 (400)
8 2iyf_A OLED, oleandomycin glyc 99.5 1.1E-13 3.6E-18 115.8 10.3 119 1-133 1-135 (430)
9 1iir_A Glycosyltransferase GTF 99.5 8.7E-14 3E-18 116.3 8.7 115 8-133 1-127 (415)
10 3ia7_A CALG4; glycosysltransfe 99.4 1.8E-13 6.1E-18 112.9 7.3 116 7-131 4-132 (402)
11 3rsc_A CALG2; TDP, enediyne, s 99.4 2E-13 6.9E-18 113.5 5.6 113 5-131 18-148 (415)
12 1rrv_A Glycosyltransferase GTF 99.3 3.3E-12 1.1E-16 106.6 8.3 116 8-133 1-128 (416)
13 2p6p_A Glycosyl transferase; X 99.2 1.3E-11 4.5E-16 101.6 6.3 116 8-132 1-137 (384)
14 2yjn_A ERYCIII, glycosyltransf 99.2 6E-12 2.1E-16 105.9 4.0 118 7-133 20-175 (441)
15 3oti_A CALG3; calicheamicin, T 99.2 6E-11 2E-15 98.3 7.4 117 6-132 19-160 (398)
16 4fzr_A SSFS6; structural genom 99.1 1.3E-10 4.3E-15 96.2 8.7 119 5-132 13-153 (398)
17 3tsa_A SPNG, NDP-rhamnosyltran 99.1 1.6E-10 5.5E-15 95.2 7.5 116 8-132 2-144 (391)
18 3h4t_A Glycosyltransferase GTF 99.1 5.7E-10 1.9E-14 92.9 9.4 115 8-134 1-127 (404)
19 3otg_A CALG1; calicheamicin, T 99.0 9.8E-10 3.3E-14 90.9 9.0 118 5-132 18-160 (412)
20 3s2u_A UDP-N-acetylglucosamine 98.5 3.5E-07 1.2E-11 75.2 9.0 111 7-130 2-122 (365)
21 1f0k_A MURG, UDP-N-acetylgluco 97.9 3.6E-05 1.2E-09 62.1 7.9 112 8-131 7-127 (364)
22 2r60_A Glycosyl transferase, g 96.3 0.02 7E-07 48.0 9.4 130 1-132 1-152 (499)
23 2jjm_A Glycosyl transferase, g 95.4 0.033 1.1E-06 45.1 6.7 114 7-132 15-134 (394)
24 3okp_A GDP-mannose-dependent a 95.0 0.04 1.4E-06 44.2 5.9 106 7-129 4-115 (394)
25 1v4v_A UDP-N-acetylglucosamine 91.2 0.3 1E-05 39.0 5.4 111 8-130 6-122 (376)
26 3c48_A Predicted glycosyltrans 90.0 0.4 1.4E-05 39.0 5.1 121 6-133 19-155 (438)
27 3fro_A GLGA glycogen synthase; 89.8 0.5 1.7E-05 38.2 5.6 39 7-45 2-45 (439)
28 3hbm_A UDP-sugar hydrolase; PS 89.8 0.28 9.6E-06 38.6 3.9 88 14-131 11-101 (282)
29 2iuy_A Avigt4, glycosyltransfe 87.6 0.83 2.8E-05 35.9 5.3 28 18-45 30-57 (342)
30 1vgv_A UDP-N-acetylglucosamine 87.4 0.42 1.4E-05 38.2 3.5 110 9-131 2-118 (384)
31 3s28_A Sucrose synthase 1; gly 84.8 0.88 3E-05 41.2 4.4 123 8-131 279-438 (816)
32 2iw1_A Lipopolysaccharide core 84.2 0.97 3.3E-05 35.7 4.1 36 9-44 2-40 (374)
33 2gek_A Phosphatidylinositol ma 83.5 1.7 5.9E-05 34.6 5.4 113 6-132 19-139 (406)
34 2x6q_A Trehalose-synthase TRET 82.8 2.3 7.9E-05 34.2 5.9 41 6-46 39-81 (416)
35 2x0d_A WSAF; GT4 family, trans 82.6 0.98 3.4E-05 37.2 3.6 40 6-45 45-89 (413)
36 3vue_A GBSS-I, granule-bound s 82.5 1.9 6.6E-05 36.8 5.5 40 5-44 7-52 (536)
37 2wqk_A 5'-nucleotidase SURE; S 82.0 1.8 6.3E-05 33.4 4.7 111 8-132 2-128 (251)
38 4hwg_A UDP-N-acetylglucosamine 81.0 1.7 5.7E-05 35.5 4.4 110 9-131 11-125 (385)
39 1y80_A Predicted cobalamin bin 77.6 5.1 0.00018 29.5 5.9 47 6-52 87-133 (210)
40 1rzu_A Glycogen synthase 1; gl 76.7 3.2 0.00011 34.2 4.9 37 9-45 2-44 (485)
41 1ccw_A Protein (glutamate muta 75.9 5.3 0.00018 27.5 5.2 44 7-50 3-46 (137)
42 2qzs_A Glycogen synthase; glyc 75.0 3.9 0.00013 33.7 5.0 37 9-45 2-44 (485)
43 3vot_A L-amino acid ligase, BL 74.9 2.5 8.5E-05 34.6 3.8 32 95-126 68-101 (425)
44 2yxb_A Coenzyme B12-dependent 74.4 5 0.00017 28.5 4.8 46 6-51 17-62 (161)
45 3e2i_A Thymidine kinase; Zn-bi 73.6 25 0.00084 26.5 8.6 38 8-45 28-66 (219)
46 2i2x_B MTAC, methyltransferase 73.1 6.5 0.00022 30.2 5.5 45 6-50 122-166 (258)
47 2r8r_A Sensor protein; KDPD, P 72.1 8.6 0.00029 29.2 5.9 41 5-45 4-44 (228)
48 3to5_A CHEY homolog; alpha(5)b 71.8 5.3 0.00018 27.4 4.3 39 96-134 51-98 (134)
49 3dzc_A UDP-N-acetylglucosamine 71.3 3.1 0.00011 33.8 3.5 111 7-130 25-142 (396)
50 3ezx_A MMCP 1, monomethylamine 71.3 8.6 0.00029 28.7 5.7 46 6-51 91-136 (215)
51 1psw_A ADP-heptose LPS heptosy 70.5 27 0.00091 27.2 8.8 102 9-129 2-107 (348)
52 1id1_A Putative potassium chan 69.9 5.4 0.00019 27.5 4.1 33 7-44 3-35 (153)
53 1kjn_A MTH0777; hypotethical p 68.1 9.7 0.00033 27.0 4.9 50 2-51 2-52 (157)
54 2phj_A 5'-nucleotidase SURE; S 66.4 6.8 0.00023 30.2 4.2 97 24-132 17-128 (251)
55 2yvq_A Carbamoyl-phosphate syn 65.8 22 0.00074 24.6 6.5 97 11-129 27-131 (143)
56 3ot5_A UDP-N-acetylglucosamine 64.1 5.1 0.00017 32.7 3.4 111 7-130 27-145 (403)
57 3pdi_A Nitrogenase MOFE cofact 63.4 22 0.00074 29.9 7.2 34 93-129 392-425 (483)
58 3gl9_A Response regulator; bet 63.0 13 0.00045 23.9 4.8 37 97-133 41-86 (122)
59 2lpm_A Two-component response 62.6 6.6 0.00023 26.5 3.2 35 96-130 47-86 (123)
60 3zqu_A Probable aromatic acid 60.3 14 0.00049 27.5 5.0 44 7-51 4-47 (209)
61 1mvl_A PPC decarboxylase athal 59.5 14 0.00047 27.6 4.7 39 7-47 19-57 (209)
62 4dim_A Phosphoribosylglycinami 58.7 50 0.0017 26.3 8.5 87 7-125 7-97 (403)
63 3qjg_A Epidermin biosynthesis 58.2 15 0.00053 26.5 4.7 40 8-48 6-45 (175)
64 3tov_A Glycosyl transferase fa 57.7 24 0.00082 28.0 6.3 101 7-134 185-291 (349)
65 3lyu_A Putative hydrogenase; t 57.2 11 0.00037 25.9 3.6 36 8-46 19-54 (142)
66 2yvk_A Methylthioribose-1-phos 57.0 44 0.0015 27.2 7.7 34 102-135 259-298 (374)
67 1t5o_A EIF2BD, translation ini 54.0 35 0.0012 27.5 6.6 33 102-135 232-270 (351)
68 3t6k_A Response regulator rece 53.3 25 0.00084 23.0 4.9 37 97-133 43-88 (136)
69 3mc3_A DSRE/DSRF-like family p 53.2 34 0.0011 23.2 5.6 31 17-47 28-58 (134)
70 1w2w_B 5-methylthioribose-1-ph 53.2 27 0.00091 25.6 5.3 22 114-135 76-97 (191)
71 2hy7_A Glucuronosyltransferase 53.0 9.7 0.00033 30.8 3.3 36 7-44 14-52 (406)
72 1lss_A TRK system potassium up 52.8 22 0.00074 23.4 4.6 33 7-44 4-36 (140)
73 2g1u_A Hypothetical protein TM 52.7 18 0.00063 24.8 4.3 34 6-44 18-51 (155)
74 1t9k_A Probable methylthioribo 52.2 54 0.0018 26.4 7.4 34 102-135 234-273 (347)
75 2q5c_A NTRC family transcripti 50.7 14 0.00048 27.0 3.5 41 92-135 129-172 (196)
76 2bru_C NAD(P) transhydrogenase 49.4 22 0.00076 25.7 4.2 35 8-44 31-70 (186)
77 3bul_A Methionine synthase; tr 49.3 30 0.001 29.9 5.8 47 6-52 97-143 (579)
78 4b4o_A Epimerase family protei 49.0 12 0.0004 28.7 3.0 31 9-43 2-32 (298)
79 3kkj_A Amine oxidase, flavin-c 48.4 11 0.00038 27.0 2.7 18 25-42 15-32 (336)
80 2a0u_A Initiation factor 2B; S 48.4 54 0.0018 26.8 6.9 21 115-135 282-302 (383)
81 3f6p_A Transcriptional regulat 48.3 32 0.0011 21.8 4.8 39 96-134 40-84 (120)
82 1p3y_1 MRSD protein; flavoprot 46.4 25 0.00087 25.7 4.3 40 7-47 8-47 (194)
83 3m6m_D Sensory/regulatory prot 46.2 26 0.00088 23.2 4.1 38 96-133 52-100 (143)
84 3lrx_A Putative hydrogenase; a 45.3 12 0.00041 26.2 2.3 36 8-46 24-59 (158)
85 3p0j_A Tyrosyl-tRNA synthetase 45.1 36 0.0012 30.1 5.7 42 5-46 380-426 (690)
86 1sbz_A Probable aromatic acid 44.6 32 0.0011 25.3 4.6 42 9-51 2-44 (197)
87 2qs7_A Uncharacterized protein 44.0 39 0.0013 23.2 4.8 33 16-48 17-49 (144)
88 3lqk_A Dipicolinate synthase s 43.9 30 0.001 25.5 4.4 40 7-47 7-47 (201)
89 3pdi_B Nitrogenase MOFE cofact 43.7 24 0.00081 29.5 4.2 33 94-129 367-399 (458)
90 1qgu_B Protein (nitrogenase mo 43.2 40 0.0014 28.6 5.6 34 93-129 425-465 (519)
91 2ejb_A Probable aromatic acid 43.2 36 0.0012 24.8 4.7 42 9-51 3-44 (189)
92 4g6h_A Rotenone-insensitive NA 42.9 14 0.00046 31.2 2.6 34 6-44 41-74 (502)
93 3mcu_A Dipicolinate synthase, 41.9 29 0.00098 25.8 4.0 39 8-47 6-45 (207)
94 2gk4_A Conserved hypothetical 40.5 24 0.00081 26.7 3.4 22 24-45 32-53 (232)
95 1g63_A Epidermin modifying enz 40.4 28 0.00096 25.2 3.7 38 9-47 4-41 (181)
96 3p9x_A Phosphoribosylglycinami 40.1 22 0.00077 26.5 3.2 32 102-133 31-62 (211)
97 3c3m_A Response regulator rece 39.9 50 0.0017 21.4 4.8 33 99-131 44-85 (138)
98 3cg0_A Response regulator rece 39.4 45 0.0016 21.4 4.5 36 98-133 50-92 (140)
99 4hn9_A Iron complex transport 38.1 32 0.0011 26.9 4.1 37 96-132 110-146 (335)
100 3vps_A TUNA, NAD-dependent epi 38.0 25 0.00084 26.8 3.3 40 1-44 1-40 (321)
101 3gt7_A Sensor protein; structu 37.6 52 0.0018 21.9 4.7 31 7-41 7-37 (154)
102 1dbw_A Transcriptional regulat 37.3 58 0.002 20.6 4.7 35 99-133 44-85 (126)
103 3dm5_A SRP54, signal recogniti 36.9 60 0.0021 27.0 5.6 41 7-47 100-140 (443)
104 2etv_A Iron(III) ABC transport 36.9 36 0.0012 26.8 4.2 39 92-131 87-126 (346)
105 3oy2_A Glycosyltransferase B73 36.6 41 0.0014 26.6 4.5 36 9-45 2-40 (413)
106 3beo_A UDP-N-acetylglucosamine 36.4 37 0.0013 26.4 4.2 113 7-131 8-127 (375)
107 2pju_A Propionate catabolism o 36.0 40 0.0014 25.2 4.1 35 94-131 143-180 (225)
108 1qzu_A Hypothetical protein MD 35.8 39 0.0014 24.9 3.9 40 7-47 19-59 (206)
109 1tmy_A CHEY protein, TMY; chem 35.7 65 0.0022 20.0 4.7 37 97-133 42-85 (120)
110 1wcv_1 SOJ, segregation protei 35.5 32 0.0011 25.7 3.5 38 9-46 8-46 (257)
111 2rjn_A Response regulator rece 35.3 55 0.0019 21.6 4.5 32 5-40 5-36 (154)
112 2a9o_A Response regulator; ess 35.2 65 0.0022 19.9 4.7 36 98-133 41-82 (120)
113 4egb_A DTDP-glucose 4,6-dehydr 35.1 84 0.0029 24.1 6.1 32 7-42 24-57 (346)
114 1g5t_A COB(I)alamin adenosyltr 35.1 53 0.0018 24.1 4.5 38 7-44 28-65 (196)
115 3lzw_A Ferredoxin--NADP reduct 34.9 16 0.00056 27.9 1.8 34 6-44 6-39 (332)
116 2r6j_A Eugenol synthase 1; phe 34.3 52 0.0018 25.1 4.6 34 8-45 12-45 (318)
117 3a10_A Response regulator; pho 34.2 82 0.0028 19.3 5.2 36 97-132 40-82 (116)
118 3kjh_A CO dehydrogenase/acetyl 33.6 40 0.0014 24.5 3.8 37 9-45 2-38 (254)
119 3i7m_A XAA-Pro dipeptidase; st 33.6 20 0.00068 24.2 1.9 35 19-53 1-35 (140)
120 3g0o_A 3-hydroxyisobutyrate de 33.4 28 0.00096 26.9 2.9 39 1-44 1-39 (303)
121 3nhm_A Response regulator; pro 33.4 87 0.003 19.8 5.2 37 96-132 41-86 (133)
122 3md9_A Hemin-binding periplasm 32.8 48 0.0016 24.6 4.1 38 92-130 50-89 (255)
123 2qr3_A Two-component system re 32.7 59 0.002 20.9 4.2 10 102-111 47-56 (140)
124 3eag_A UDP-N-acetylmuramate:L- 32.6 51 0.0018 25.8 4.4 35 7-45 4-38 (326)
125 3b2n_A Uncharacterized protein 32.1 62 0.0021 20.8 4.2 37 97-133 44-87 (133)
126 2rdm_A Response regulator rece 31.9 81 0.0028 19.9 4.8 38 96-133 43-89 (132)
127 2qzj_A Two-component response 31.8 59 0.002 21.1 4.1 37 97-133 43-85 (136)
128 3grc_A Sensor protein, kinase; 31.8 72 0.0025 20.5 4.5 38 96-133 44-90 (140)
129 3u7q_A Nitrogenase molybdenum- 31.7 44 0.0015 28.1 4.0 33 93-128 408-440 (492)
130 1mb3_A Cell division response 31.7 62 0.0021 20.2 4.1 36 97-132 40-84 (124)
131 2xci_A KDO-transferase, 3-deox 31.3 1.1E+02 0.0039 24.1 6.4 93 9-129 42-137 (374)
132 1xhf_A DYE resistance, aerobic 31.2 77 0.0026 19.7 4.5 37 97-133 42-84 (123)
133 1xx6_A Thymidine kinase; NESG, 31.2 1E+02 0.0034 22.2 5.5 38 7-44 7-45 (191)
134 4f0j_A Probable hydrolytic enz 31.1 75 0.0026 23.2 5.0 38 6-44 45-82 (315)
135 2q8p_A Iron-regulated surface 31.0 48 0.0016 24.6 3.8 39 93-132 52-91 (260)
136 2qxy_A Response regulator; reg 31.0 66 0.0023 20.7 4.3 34 98-132 44-84 (142)
137 2rh8_A Anthocyanidin reductase 30.8 54 0.0019 25.2 4.2 31 8-42 10-40 (338)
138 1pq4_A Periplasmic binding pro 30.8 63 0.0022 25.0 4.6 41 96-136 231-273 (291)
139 3ew7_A LMO0794 protein; Q8Y8U8 30.7 35 0.0012 24.2 3.0 32 9-44 2-33 (221)
140 4ds3_A Phosphoribosylglycinami 30.5 39 0.0013 25.1 3.1 30 102-131 36-65 (209)
141 1pno_A NAD(P) transhydrogenase 30.5 61 0.0021 23.4 3.9 36 7-44 23-63 (180)
142 1p9o_A Phosphopantothenoylcyst 30.5 36 0.0012 27.0 3.1 21 25-45 69-89 (313)
143 3e8x_A Putative NAD-dependent 30.5 35 0.0012 24.8 3.0 33 8-44 22-54 (236)
144 4as2_A Phosphorylcholine phosp 30.3 42 0.0014 26.6 3.5 24 21-44 145-168 (327)
145 3end_A Light-independent proto 30.1 79 0.0027 24.1 5.1 38 8-45 42-79 (307)
146 3e61_A Putative transcriptiona 30.0 1.6E+02 0.0055 21.5 9.2 36 12-47 14-50 (277)
147 3lte_A Response regulator; str 29.9 95 0.0032 19.6 4.9 17 97-113 45-61 (132)
148 3kht_A Response regulator; PSI 29.8 1.1E+02 0.0039 19.6 5.3 12 102-113 51-62 (144)
149 3p32_A Probable GTPase RV1496/ 29.6 77 0.0026 25.0 5.0 38 7-44 79-116 (355)
150 1d4o_A NADP(H) transhydrogenas 29.5 64 0.0022 23.3 3.9 35 8-44 23-62 (184)
151 1u7z_A Coenzyme A biosynthesis 29.5 45 0.0016 25.0 3.4 21 24-44 37-57 (226)
152 3crn_A Response regulator rece 29.5 78 0.0027 20.2 4.4 37 97-133 42-85 (132)
153 1srr_A SPO0F, sporulation resp 29.3 64 0.0022 20.2 3.8 36 98-133 43-85 (124)
154 3cz5_A Two-component response 29.3 1E+02 0.0035 20.1 5.1 38 96-133 45-89 (153)
155 1meo_A Phosophoribosylglycinam 29.0 53 0.0018 24.2 3.6 40 93-132 13-59 (209)
156 1mio_B Nitrogenase molybdenum 29.0 52 0.0018 27.3 4.0 33 94-129 377-409 (458)
157 2pl1_A Transcriptional regulat 28.9 1E+02 0.0036 18.9 5.1 37 97-133 39-82 (121)
158 1zgz_A Torcad operon transcrip 28.9 79 0.0027 19.6 4.2 38 96-133 40-83 (122)
159 3h2s_A Putative NADH-flavin re 28.8 40 0.0014 24.1 3.0 20 25-44 14-33 (224)
160 3hv2_A Response regulator/HD d 28.7 70 0.0024 21.1 4.1 13 101-113 57-69 (153)
161 1ycd_A Hypothetical 27.3 kDa p 28.6 98 0.0034 22.1 5.2 38 7-44 5-45 (243)
162 1xjc_A MOBB protein homolog; s 28.3 1.3E+02 0.0043 21.3 5.5 39 7-45 4-42 (169)
163 3f67_A Putative dienelactone h 28.3 1.1E+02 0.0038 21.4 5.4 35 8-43 33-67 (241)
164 3kto_A Response regulator rece 28.3 43 0.0015 21.7 2.9 12 102-113 50-61 (136)
165 2gkg_A Response regulator homo 28.2 85 0.0029 19.4 4.3 33 97-129 44-86 (127)
166 3noh_A Putative peptide bindin 28.2 41 0.0014 22.8 2.6 18 25-42 78-95 (139)
167 2fsv_C NAD(P) transhydrogenase 28.1 68 0.0023 23.6 3.9 35 8-44 47-86 (203)
168 3l6d_A Putative oxidoreductase 28.0 40 0.0014 26.1 3.0 34 6-44 8-41 (306)
169 3llv_A Exopolyphosphatase-rela 27.9 41 0.0014 22.3 2.7 33 7-44 6-38 (141)
170 1qkk_A DCTD, C4-dicarboxylate 27.8 83 0.0028 20.7 4.4 16 25-40 17-32 (155)
171 1yrb_A ATP(GTP)binding protein 27.7 1.1E+02 0.0037 22.5 5.3 38 7-45 14-51 (262)
172 1djl_A Transhydrogenase DIII; 27.7 70 0.0024 23.6 3.9 35 8-44 46-85 (207)
173 1kgs_A DRRD, DNA binding respo 27.7 89 0.003 22.1 4.7 13 101-113 45-57 (225)
174 1n2z_A Vitamin B12 transport p 27.7 78 0.0027 23.2 4.5 39 93-132 49-89 (245)
175 2r7a_A Bacterial heme binding 27.5 66 0.0023 23.8 4.1 37 93-130 51-89 (256)
176 4e7p_A Response regulator; DNA 27.5 91 0.0031 20.4 4.5 38 96-133 60-104 (150)
177 2gwr_A DNA-binding response re 27.5 81 0.0028 22.8 4.5 11 102-112 49-59 (238)
178 3kcq_A Phosphoribosylglycinami 27.5 55 0.0019 24.3 3.5 30 102-131 37-66 (215)
179 3q9s_A DNA-binding response re 27.5 97 0.0033 22.8 5.0 37 97-133 76-118 (249)
180 1byi_A Dethiobiotin synthase; 27.4 89 0.003 22.3 4.7 33 10-42 4-37 (224)
181 2b4a_A BH3024; flavodoxin-like 27.4 82 0.0028 20.2 4.2 35 96-130 53-95 (138)
182 3n0r_A Response regulator; sig 27.3 75 0.0026 24.3 4.4 36 97-132 200-242 (286)
183 2ts1_A Tyrosyl-tRNA synthetase 27.3 64 0.0022 26.6 4.2 25 19-44 47-71 (419)
184 1hdo_A Biliverdin IX beta redu 27.3 45 0.0015 23.3 3.0 33 8-44 4-36 (206)
185 2hy5_B Intracellular sulfur ox 27.2 1.1E+02 0.0037 20.7 4.8 35 11-45 10-46 (136)
186 3oz2_A Digeranylgeranylglycero 27.0 38 0.0013 26.4 2.7 18 25-42 17-34 (397)
187 3ug7_A Arsenical pump-driving 27.0 1E+02 0.0036 24.3 5.3 39 8-46 26-65 (349)
188 3cu5_A Two component transcrip 26.9 79 0.0027 20.5 4.1 34 98-131 45-85 (141)
189 3ouz_A Biotin carboxylase; str 26.8 1.2E+02 0.0043 24.5 5.9 34 7-45 6-39 (446)
190 1p6q_A CHEY2; chemotaxis, sign 26.7 76 0.0026 20.0 3.9 36 97-132 46-90 (129)
191 2fuk_A XC6422 protein; A/B hyd 26.7 1.3E+02 0.0045 20.7 5.5 37 7-43 37-77 (220)
192 1y42_X Tyrosyl-tRNA synthetase 26.6 50 0.0017 27.0 3.4 25 19-44 81-105 (392)
193 1yio_A Response regulatory pro 26.5 68 0.0023 22.5 3.9 21 20-40 13-33 (208)
194 3rqi_A Response regulator prot 26.5 52 0.0018 22.8 3.2 34 99-132 48-88 (184)
195 3cfy_A Putative LUXO repressor 26.4 82 0.0028 20.3 4.1 35 98-132 44-85 (137)
196 2pd6_A Estradiol 17-beta-dehyd 26.4 1E+02 0.0035 22.6 5.0 21 24-44 20-40 (264)
197 3psh_A Protein HI_1472; substr 26.3 74 0.0025 24.5 4.3 39 93-132 76-115 (326)
198 3f6c_A Positive transcription 26.3 99 0.0034 19.5 4.4 39 95-133 39-84 (134)
199 2ew2_A 2-dehydropantoate 2-red 26.2 43 0.0015 25.5 2.8 32 8-44 4-35 (316)
200 1jx7_A Hypothetical protein YC 26.1 1.1E+02 0.0036 19.5 4.5 28 19-46 16-45 (117)
201 1uxo_A YDEN protein; hydrolase 26.1 92 0.0032 21.1 4.5 38 7-44 4-42 (192)
202 1ys7_A Transcriptional regulat 26.0 1E+02 0.0036 21.9 4.9 15 25-39 21-35 (233)
203 2xxa_A Signal recognition part 25.9 1.2E+02 0.0042 24.9 5.7 39 8-46 101-140 (433)
204 3s40_A Diacylglycerol kinase; 25.9 1.4E+02 0.0047 23.0 5.8 41 6-46 9-50 (304)
205 3c97_A Signal transduction his 25.7 1.3E+02 0.0045 19.2 5.0 24 97-120 49-74 (140)
206 1y1p_A ARII, aldehyde reductas 25.6 1E+02 0.0034 23.5 5.0 34 7-44 11-44 (342)
207 2r79_A Periplasmic binding pro 25.5 86 0.0029 23.6 4.5 37 93-130 51-89 (283)
208 3fwz_A Inner membrane protein 25.4 57 0.002 21.7 3.1 34 7-45 7-40 (140)
209 2qjw_A Uncharacterized protein 25.2 96 0.0033 20.6 4.3 37 6-42 3-40 (176)
210 1jbe_A Chemotaxis protein CHEY 25.0 1.2E+02 0.004 19.0 4.6 34 99-132 46-88 (128)
211 2x5n_A SPRPN10, 26S proteasome 24.8 1.3E+02 0.0043 21.6 5.1 35 10-44 110-144 (192)
212 4hb9_A Similarities with proba 24.8 48 0.0017 26.0 3.0 29 8-41 2-30 (412)
213 3sty_A Methylketone synthase 1 24.8 97 0.0033 22.0 4.5 38 6-44 11-48 (267)
214 3r0j_A Possible two component 24.7 95 0.0032 22.7 4.5 34 100-133 65-105 (250)
215 4dzz_A Plasmid partitioning pr 24.7 1.1E+02 0.0037 21.4 4.7 37 10-46 4-41 (206)
216 2r25_B Osmosensing histidine p 24.7 1.4E+02 0.0047 19.0 5.0 33 101-133 51-91 (133)
217 3dqp_A Oxidoreductase YLBE; al 24.5 47 0.0016 23.8 2.7 20 25-44 14-33 (219)
218 1jil_A Tyrrs, tyrosyl-tRNA syn 24.4 61 0.0021 26.7 3.5 25 19-44 49-73 (420)
219 1cp2_A CP2, nitrogenase iron p 24.1 1E+02 0.0035 22.8 4.6 36 9-44 3-38 (269)
220 3obb_A Probable 3-hydroxyisobu 24.1 78 0.0027 24.6 4.0 32 8-44 4-35 (300)
221 1jzt_A Hypothetical 27.5 kDa p 24.1 49 0.0017 25.1 2.7 35 8-44 59-94 (246)
222 1o97_C Electron transferring f 24.0 1.1E+02 0.0038 23.3 4.8 38 94-131 104-147 (264)
223 2gt1_A Lipopolysaccharide hept 24.0 74 0.0025 24.4 3.9 43 9-51 2-46 (326)
224 2afh_E Nitrogenase iron protei 23.9 1.1E+02 0.0037 23.0 4.8 37 9-45 4-40 (289)
225 3gi1_A LBP, laminin-binding pr 23.9 81 0.0028 24.3 4.0 36 96-131 222-259 (286)
226 2ehd_A Oxidoreductase, oxidore 23.8 59 0.002 23.5 3.1 21 24-44 18-38 (234)
227 2dkn_A 3-alpha-hydroxysteroid 23.8 59 0.002 23.6 3.1 20 24-43 14-33 (255)
228 3eq2_A Probable two-component 23.8 77 0.0026 25.2 4.0 12 102-113 49-60 (394)
229 3h1g_A Chemotaxis protein CHEY 23.8 1.4E+02 0.0049 18.7 5.1 32 102-133 51-91 (129)
230 1zi8_A Carboxymethylenebutenol 23.8 1.4E+02 0.0048 20.7 5.2 35 8-43 29-63 (236)
231 3qit_A CURM TE, polyketide syn 23.7 1.1E+02 0.0039 21.6 4.8 37 7-44 26-62 (286)
232 1i3c_A Response regulator RCP1 23.6 1.1E+02 0.0037 20.0 4.3 17 20-36 17-33 (149)
233 3d3k_A Enhancer of mRNA-decapp 23.6 60 0.002 24.8 3.2 35 8-44 86-121 (259)
234 4dll_A 2-hydroxy-3-oxopropiona 23.6 1.1E+02 0.0037 23.8 4.8 33 7-44 31-63 (320)
235 2xdq_B Light-independent proto 23.6 62 0.0021 27.2 3.5 34 93-129 363-396 (511)
236 3iqw_A Tail-anchored protein t 23.5 1E+02 0.0035 24.3 4.6 40 8-47 16-56 (334)
237 3h5i_A Response regulator/sens 23.5 1.4E+02 0.0047 19.1 4.8 31 101-131 49-86 (140)
238 3mm4_A Histidine kinase homolo 23.4 1.1E+02 0.0036 21.8 4.4 32 102-133 119-161 (206)
239 1xrs_B D-lysine 5,6-aminomutas 23.4 74 0.0025 24.5 3.6 47 6-52 119-174 (262)
240 2hy5_A Putative sulfurtransfer 23.4 1.5E+02 0.0051 19.6 4.9 27 19-45 15-42 (130)
241 3n53_A Response regulator rece 23.2 76 0.0026 20.4 3.4 37 96-132 40-85 (140)
242 1dhr_A Dihydropteridine reduct 23.1 60 0.0021 23.8 3.1 20 24-43 20-39 (241)
243 4gbj_A 6-phosphogluconate dehy 23.1 85 0.0029 24.2 4.0 30 9-43 7-36 (297)
244 2ywl_A Thioredoxin reductase r 23.1 55 0.0019 22.6 2.7 21 24-44 13-33 (180)
245 4a1f_A DNAB helicase, replicat 23.0 1.8E+02 0.0061 23.1 6.0 42 9-50 48-89 (338)
246 1a04_A Nitrate/nitrite respons 23.0 85 0.0029 22.1 3.8 35 98-132 47-88 (215)
247 4dad_A Putative pilus assembly 22.9 90 0.0031 20.2 3.7 33 101-133 66-105 (146)
248 2g36_A Tryptophanyl-tRNA synth 22.9 52 0.0018 26.3 2.8 26 19-44 28-53 (340)
249 3eul_A Possible nitrate/nitrit 22.9 98 0.0033 20.2 3.9 36 97-132 56-98 (152)
250 1zh2_A KDP operon transcriptio 22.6 96 0.0033 19.1 3.7 34 100-133 43-82 (121)
251 1cyd_A Carbonyl reductase; sho 22.5 65 0.0022 23.4 3.1 21 24-44 20-40 (244)
252 2j37_W Signal recognition part 22.4 1.3E+02 0.0043 25.5 5.2 39 7-45 101-139 (504)
253 2pnf_A 3-oxoacyl-[acyl-carrier 22.4 65 0.0022 23.4 3.1 21 24-44 20-40 (248)
254 3eod_A Protein HNR; response r 22.4 1.5E+02 0.0051 18.5 5.8 39 1-43 1-39 (130)
255 3zxs_A Cryptochrome B, rscryb; 22.3 82 0.0028 26.9 4.0 24 20-43 65-88 (522)
256 3f9i_A 3-oxoacyl-[acyl-carrier 22.3 66 0.0022 23.6 3.1 33 9-44 15-47 (249)
257 2jk1_A HUPR, hydrogenase trans 22.2 81 0.0028 20.3 3.4 36 97-132 39-81 (139)
258 3awd_A GOX2181, putative polyo 22.2 66 0.0023 23.6 3.1 21 24-44 26-46 (260)
259 3k9g_A PF-32 protein; ssgcid, 22.1 90 0.0031 23.1 3.9 39 7-46 26-66 (267)
260 3aek_B Light-independent proto 22.1 69 0.0024 27.1 3.5 32 94-128 341-372 (525)
261 3dkr_A Esterase D; alpha beta 22.1 90 0.0031 21.8 3.8 37 7-44 22-58 (251)
262 3dqz_A Alpha-hydroxynitrIle ly 22.1 81 0.0028 22.3 3.6 36 8-44 5-40 (258)
263 3la6_A Tyrosine-protein kinase 22.1 1.7E+02 0.0058 22.3 5.6 40 7-46 91-132 (286)
264 2oqr_A Sensory transduction pr 22.1 2E+02 0.0069 20.3 5.8 37 98-134 44-86 (230)
265 3d3j_A Enhancer of mRNA-decapp 22.1 69 0.0024 25.2 3.3 35 8-44 133-168 (306)
266 3bh0_A DNAB-like replicative h 22.0 2.1E+02 0.007 22.1 6.1 42 9-50 70-111 (315)
267 1mvo_A PHOP response regulator 21.9 1.4E+02 0.0049 18.7 4.6 11 102-112 47-57 (136)
268 1efv_B Electron transfer flavo 21.9 1.3E+02 0.0044 22.9 4.8 38 94-131 108-151 (255)
269 3dhn_A NAD-dependent epimerase 21.8 59 0.002 23.2 2.8 33 8-44 5-37 (227)
270 3e1t_A Halogenase; flavoprotei 21.8 57 0.0019 27.2 2.9 35 5-44 5-39 (512)
271 1z82_A Glycerol-3-phosphate de 21.8 74 0.0025 24.8 3.5 33 7-44 14-46 (335)
272 2j9r_A Thymidine kinase; TK1, 21.7 2.1E+02 0.0072 21.1 5.8 39 7-45 27-66 (214)
273 3afn_B Carbonyl reductase; alp 21.6 69 0.0023 23.4 3.1 32 10-44 9-40 (258)
274 2jba_A Phosphate regulon trans 21.6 78 0.0027 19.8 3.1 33 102-134 46-87 (127)
275 2xj4_A MIPZ; replication, cell 21.6 1.3E+02 0.0044 22.7 4.8 30 16-45 14-43 (286)
276 2vsy_A XCC0866; transferase, g 21.6 1.4E+02 0.0047 24.7 5.3 39 6-44 204-246 (568)
277 4eg0_A D-alanine--D-alanine li 21.5 2.1E+02 0.0071 21.8 6.1 38 7-45 13-55 (317)
278 2o8n_A APOA-I binding protein; 21.5 65 0.0022 24.8 3.0 35 8-44 80-115 (265)
279 3l77_A Short-chain alcohol deh 21.4 71 0.0024 23.1 3.1 21 24-44 15-35 (235)
280 2zat_A Dehydrogenase/reductase 21.4 70 0.0024 23.7 3.1 33 9-44 15-47 (260)
281 2cfc_A 2-(R)-hydroxypropyl-COM 21.4 70 0.0024 23.3 3.1 21 24-44 15-35 (250)
282 3hzh_A Chemotaxis response reg 21.3 1.3E+02 0.0045 19.8 4.4 38 96-133 75-121 (157)
283 1a9x_A Carbamoyl phosphate syn 21.3 2.9E+02 0.01 25.5 7.8 81 23-129 956-1043(1073)
284 2wsb_A Galactitol dehydrogenas 21.3 71 0.0024 23.3 3.1 21 24-44 24-44 (254)
285 3orf_A Dihydropteridine reduct 21.3 70 0.0024 23.6 3.1 33 9-44 23-55 (251)
286 1nff_A Putative oxidoreductase 21.3 70 0.0024 23.8 3.1 21 24-44 20-40 (260)
287 2ph3_A 3-oxoacyl-[acyl carrier 21.2 65 0.0022 23.3 2.9 18 24-41 14-31 (245)
288 1zk4_A R-specific alcohol dehy 21.2 71 0.0024 23.3 3.1 21 24-44 19-39 (251)
289 3qiv_A Short-chain dehydrogena 21.0 72 0.0025 23.4 3.1 33 9-44 10-42 (253)
290 2o23_A HADH2 protein; HSD17B10 21.0 72 0.0025 23.5 3.1 21 24-44 25-45 (265)
291 2dr3_A UPF0273 protein PH0284; 21.0 2E+02 0.007 20.5 5.7 42 9-50 25-66 (247)
292 3hwr_A 2-dehydropantoate 2-red 20.9 58 0.002 25.3 2.7 30 7-41 19-48 (318)
293 4e5v_A Putative THUA-like prot 20.9 1.5E+02 0.0051 22.8 5.0 38 6-44 3-43 (281)
294 3i1j_A Oxidoreductase, short c 20.9 73 0.0025 23.2 3.1 33 9-44 15-47 (247)
295 2v3c_C SRP54, signal recogniti 20.9 93 0.0032 25.6 4.0 39 8-46 100-138 (432)
296 2b69_A UDP-glucuronate decarbo 20.9 1.1E+02 0.0036 23.6 4.2 33 7-43 27-59 (343)
297 4ao6_A Esterase; hydrolase, th 20.8 91 0.0031 22.9 3.7 36 9-44 57-94 (259)
298 4b4t_W RPN10, 26S proteasome r 20.8 1.4E+02 0.0048 22.9 4.8 63 8-70 108-175 (268)
299 1uls_A Putative 3-oxoacyl-acyl 20.8 73 0.0025 23.4 3.1 21 24-44 18-38 (245)
300 3jte_A Response regulator rece 20.8 1.4E+02 0.0047 19.1 4.3 17 24-40 16-32 (143)
301 3dff_A Teicoplanin pseudoaglyc 20.8 1.5E+02 0.0052 22.5 5.0 35 9-44 10-44 (273)
302 1ooe_A Dihydropteridine reduct 20.7 61 0.0021 23.6 2.6 20 24-43 16-35 (236)
303 3pfb_A Cinnamoyl esterase; alp 20.7 1.8E+02 0.0063 20.6 5.4 37 7-44 46-84 (270)
304 1ihu_A Arsenical pump-driving 20.6 1.1E+02 0.0039 25.9 4.6 39 7-45 7-46 (589)
305 2j48_A Two-component sensor ki 20.6 1.5E+02 0.0051 17.8 4.4 37 96-132 39-84 (119)
306 1fjh_A 3alpha-hydroxysteroid d 20.6 74 0.0025 23.3 3.1 20 24-43 14-33 (257)
307 3kl4_A SRP54, signal recogniti 20.5 1.3E+02 0.0043 24.9 4.7 39 8-46 98-136 (433)
308 3l6e_A Oxidoreductase, short-c 20.5 75 0.0026 23.2 3.1 21 24-44 16-36 (235)
309 2zay_A Response regulator rece 20.5 1.4E+02 0.0049 19.1 4.4 11 102-112 52-62 (147)
310 3u7q_B Nitrogenase molybdenum- 20.5 1.2E+02 0.004 25.8 4.6 33 93-128 429-468 (523)
311 3eei_A 5-methylthioadenosine n 20.5 82 0.0028 23.1 3.3 30 104-133 171-200 (233)
312 1o5i_A 3-oxoacyl-(acyl carrier 20.4 75 0.0026 23.4 3.1 33 9-44 20-52 (249)
313 3ius_A Uncharacterized conserv 20.4 62 0.0021 24.1 2.7 33 8-45 6-38 (286)
314 1uay_A Type II 3-hydroxyacyl-C 20.3 58 0.002 23.5 2.4 20 24-43 15-34 (242)
315 2ekp_A 2-deoxy-D-gluconate 3-d 20.3 77 0.0026 23.1 3.1 21 24-44 15-35 (239)
316 1iy8_A Levodione reductase; ox 20.3 75 0.0026 23.6 3.1 33 9-44 14-46 (267)
317 2ag5_A DHRS6, dehydrogenase/re 20.3 76 0.0026 23.2 3.1 32 9-43 7-38 (246)
318 3r6d_A NAD-dependent epimerase 20.3 80 0.0027 22.5 3.2 97 9-133 7-109 (221)
319 1vl8_A Gluconate 5-dehydrogena 20.3 75 0.0026 23.8 3.1 33 9-44 22-54 (267)
320 2uvd_A 3-oxoacyl-(acyl-carrier 20.2 77 0.0026 23.2 3.1 20 24-43 17-36 (246)
321 1fmc_A 7 alpha-hydroxysteroid 20.2 75 0.0025 23.2 3.1 33 9-44 12-44 (255)
322 3ksu_A 3-oxoacyl-acyl carrier 20.2 1.2E+02 0.0043 22.4 4.4 32 9-43 12-43 (262)
323 3ek2_A Enoyl-(acyl-carrier-pro 20.2 72 0.0025 23.6 3.0 34 9-44 15-49 (271)
324 2gdz_A NAD+-dependent 15-hydro 20.2 76 0.0026 23.6 3.1 21 24-44 20-40 (267)
325 3d3w_A L-xylulose reductase; u 20.1 78 0.0027 23.0 3.1 21 24-44 20-40 (244)
326 2yxn_A Tyrosyl-tRNA synthetase 20.1 87 0.003 24.7 3.5 25 19-44 50-74 (322)
327 3tov_A Glycosyl transferase fa 20.0 54 0.0018 25.9 2.3 43 7-49 8-52 (349)
328 4e6p_A Probable sorbitol dehyd 20.0 73 0.0025 23.6 3.0 32 9-43 9-40 (259)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=99.97 E-value=1.7e-30 Score=220.99 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=122.0
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCC--CeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRG--VKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSE 83 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~ 83 (189)
++.||+++|+|+|||++||++|||+|++|| ++|||++|+.+..++.+... ...++|+|+.+| +++|++.+
T Consensus 12 ~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~---~~~~~i~~~~ip-----dglp~~~~ 83 (454)
T 3hbf_A 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSN---EFLPNIKYYNVH-----DGLPKGYV 83 (454)
T ss_dssp CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSS---CCCTTEEEEECC-----CCCCTTCC
T ss_pred CCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccc---cCCCCceEEecC-----CCCCCCcc
Confidence 467999999999999999999999999999 99999999766655432210 112469999986 46776654
Q ss_pred cccCCCC---------CCCHHHhhhh------cCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCC
Q 042879 84 NLNEMTS---------QPDMPVNLQE------HKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEP 148 (189)
Q Consensus 84 ~~~~~~~---------~~~l~~ll~~------~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~ 148 (189)
...+... .+.+++.+++ .+++|||+|+|++|+.+||+++|||++.|||+++++++++++++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~ 163 (454)
T 3hbf_A 84 SSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIRE 163 (454)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHh
Confidence 3322110 1223344433 278999999999999999999999999999999999999999876432
Q ss_pred CCC--CCCCCCcee-cCCCCCCcccccccCCccccC
Q 042879 149 HKK--VSSVSEPFV-IPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 149 ~~~--~~~~~~~~~-iPg~p~~~~~~~~dlp~~~~~ 181 (189)
... ...+++.+. +||+|+ ++.+|||++++.
T Consensus 164 ~~~~~~~~~~~~~~~iPg~p~---~~~~dlp~~~~~ 196 (454)
T 3hbf_A 164 KTGSKEVHDVKSIDVLPGFPE---LKASDLPEGVIK 196 (454)
T ss_dssp TCCHHHHTTSSCBCCSTTSCC---BCGGGSCTTSSS
T ss_pred hcCCCccccccccccCCCCCC---cChhhCchhhcc
Confidence 211 011223454 999986 788999998874
No 2
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=99.91 E-value=8.8e-25 Score=186.40 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=118.5
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchH-HHhhhccccccCCCceEEEEeeCCCCCCCCCCC
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANAT-LFSKAIPRANELGIEIDIKTIKFPSVEVGLPEG 81 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~ 81 (189)
+++.||+++|+|++||++||++|||+|++| ||+|||+++..+.. .+.+.+.+......+++|+.+|.. .+++.
T Consensus 7 ~~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~~~~ 82 (463)
T 2acv_A 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEV----EPPPQ 82 (463)
T ss_dssp HHCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCC----CCCCG
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCC----CCCcc
Confidence 346799999999999999999999999999 99999999987531 111111100011246999988742 12321
Q ss_pred C--CcccC-CC-----CCCCHHHhhhh---cCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhCCCC
Q 042879 82 S--ENLNE-MT-----SQPDMPVNLQE---HKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYEPHK 150 (189)
Q Consensus 82 ~--~~~~~-~~-----~~~~l~~ll~~---~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~ 150 (189)
. ..... +. ..+.+++++++ .++||||+|.++.|+.++|+++|||++.||+++++.++++++++.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 162 (463)
T 2acv_A 83 ELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEE 162 (463)
T ss_dssp GGGGSHHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTTC
T ss_pred cccCCccHHHHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhcccC
Confidence 0 00000 00 12346677776 48999999999999999999999999999999999999999988653111
Q ss_pred CCCCCCC---ceecCCC-CCCcccccccCCccccC
Q 042879 151 KVSSVSE---PFVIPNL-PGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 151 ~~~~~~~---~~~iPg~-p~~~~~~~~dlp~~~~~ 181 (189)
...+..+ ...+||+ ++ ++.+|+|..+.+
T Consensus 163 ~~~~~~~~~~~~~~pg~~~~---~~~~~l~~~~~~ 194 (463)
T 2acv_A 163 VFDDSDRDHQLLNIPGISNQ---VPSNVLPDACFN 194 (463)
T ss_dssp CCCCSSGGGCEECCTTCSSC---EEGGGSCHHHHC
T ss_pred CCCCccccCceeECCCCCCC---CChHHCchhhcC
Confidence 1111222 4568999 65 778999976654
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=99.90 E-value=4e-24 Score=183.04 Aligned_cols=173 Identities=23% Similarity=0.328 Sum_probs=112.1
Q ss_pred CCCC-CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccC-CCceEEEEeeCCCCCCCC
Q 042879 1 MAGE-IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANEL-GIEIDIKTIKFPSVEVGL 78 (189)
Q Consensus 1 m~~~-~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~-~~~i~~~~lp~~~~~~~~ 78 (189)
|+.. +++.||+++|+|++||+|||++||++|++|||+|||++++.+..++.+........ ..+++++.+| +++
T Consensus 1 ~~~~~~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~l 75 (482)
T 2pq6_A 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP-----DGL 75 (482)
T ss_dssp -------CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC-----CCC
T ss_pred CCcccCCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC-----CCC
Confidence 5543 44679999999999999999999999999999999999987765554321100001 1368998886 244
Q ss_pred CCC---CCcccC-------C-C-CCCCHHHhhhh-------cCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHH
Q 042879 79 PEG---SENLNE-------M-T-SQPDMPVNLQE-------HKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCA 139 (189)
Q Consensus 79 p~~---~~~~~~-------~-~-~~~~l~~ll~~-------~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 139 (189)
|+. ...... + . ..+.+++++++ .++||||+|.++.|+.++|+++|||++.||+++++.++.
T Consensus 76 p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~ 155 (482)
T 2pq6_A 76 TPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLN 155 (482)
T ss_dssp C---------CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHH
T ss_pred CCcccccCcchhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHH
Confidence 431 000000 0 0 01335566653 379999999999999999999999999999999998888
Q ss_pred HHHHHhh-----CCCCCCC--CC---CCce-ecCCCCCCcccccccCCccccC
Q 042879 140 TACLMLY-----EPHKKVS--SV---SEPF-VIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 140 ~~~~~~~-----~~~~~~~--~~---~~~~-~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
+++++.. .+..... +. +..+ .+||+++ ++.+++|..+..
T Consensus 156 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 205 (482)
T 2pq6_A 156 VMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKN---FRLKDIVDFIRT 205 (482)
T ss_dssp HTTHHHHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCS---CBGGGSCGGGCC
T ss_pred HHHHHHHHhcCCCCCccccccccccccCccccCCCCCC---CchHHCchhhcc
Confidence 7665542 1211100 01 1222 4789986 677899987654
No 4
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=99.89 E-value=3.1e-23 Score=177.62 Aligned_cols=173 Identities=20% Similarity=0.291 Sum_probs=115.6
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcc--hHHHhhhccccccCCCceEEEEeeCCCCCCC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPAN--ATLFSKAIPRANELGIEIDIKTIKFPSVEVG 77 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~--~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 77 (189)
|+. .++.||+++|+|++||++||++||++|++| ||+|||+++..+ ...+.+... ....+++++.+|....+ +
T Consensus 1 M~~-~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~~~~-~ 75 (480)
T 2vch_A 1 MEE-SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD---SLPSSISSVFLPPVDLT-D 75 (480)
T ss_dssp ------CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC----CCTTEEEEECCCCCCT-T
T ss_pred CCC-CCCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhcc---ccCCCceEEEcCCCCCC-C
Confidence 543 445799999999999999999999999998 999999999874 222322110 00246899888743110 1
Q ss_pred CCCCCCcccCC-----CCCCCHHHhhhhc----CC-CEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHHHhhC
Q 042879 78 LPEGSENLNEM-----TSQPDMPVNLQEH----KP-NCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACLMLYE 147 (189)
Q Consensus 78 ~p~~~~~~~~~-----~~~~~l~~ll~~~----~~-d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 147 (189)
..........+ ...+.++++++++ ++ ||||+|.|+.|+.++|+++|||++.||+++++.++++++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (480)
T 2vch_A 76 LSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLD 155 (480)
T ss_dssp SCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHH
Confidence 11000000000 0123456677653 78 99999999999999999999999999999999999998887542
Q ss_pred CC--CCCCCCCCceecCCCCCCcccccccCCccccC
Q 042879 148 PH--KKVSSVSEPFVIPNLPGDIKLTRNQLPDTMKQ 181 (189)
Q Consensus 148 ~~--~~~~~~~~~~~iPg~p~~~~~~~~dlp~~~~~ 181 (189)
.. ....+......+||+++ ++.+++|..+.+
T Consensus 156 ~~~~~~~~~~~~~~~~Pg~~p---~~~~~l~~~~~~ 188 (480)
T 2vch_A 156 ETVSCEFRELTEPLMLPGCVP---VAGKDFLDPAQD 188 (480)
T ss_dssp HHCCSCGGGCSSCBCCTTCCC---BCGGGSCGGGSC
T ss_pred hcCCCcccccCCcccCCCCCC---CChHHCchhhhc
Confidence 11 11111123456899986 777899987654
No 5
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=99.89 E-value=6.5e-23 Score=174.58 Aligned_cols=170 Identities=18% Similarity=0.241 Sum_probs=109.1
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCC--CeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRG--VKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGL 78 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~ 78 (189)
|+...++.||+++|+|++||++||++|||+|++|| +.||+++++.+..++.+.... ....+++++.++ +++
T Consensus 1 m~~~~~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~--~~~~~i~~~~i~-----~gl 73 (456)
T 2c1x_A 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMH--TMQCNIKSYDIS-----DGV 73 (456)
T ss_dssp ------CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC---------CTTEEEEECC-----CCC
T ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccc--cCCCceEEEeCC-----CCC
Confidence 56555678999999999999999999999999985 567888887544433221100 002468888875 355
Q ss_pred CCCCCcccCCCC---------CCCHHHhhh----h--cCCCEEEeCCCcchHHHHHHHhCCCeEEEechhHHHHHHHHHH
Q 042879 79 PEGSENLNEMTS---------QPDMPVNLQ----E--HKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFLSLCATACL 143 (189)
Q Consensus 79 p~~~~~~~~~~~---------~~~l~~ll~----~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~ 143 (189)
|++.+....... .+.++++++ + .++||||+|.|+.|+.++|+++|||++.||+++++.++.+++.
T Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~ 153 (456)
T 2c1x_A 74 PEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYI 153 (456)
T ss_dssp CTTCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTH
T ss_pred CCcccccCChHHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhh
Confidence 544321110000 122333443 2 3799999999999999999999999999999999988887665
Q ss_pred HhhC---CCCCC-CCCCCc-eecCCCCCCcccccccCCcccc
Q 042879 144 MLYE---PHKKV-SSVSEP-FVIPNLPGDIKLTRNQLPDTMK 180 (189)
Q Consensus 144 ~~~~---~~~~~-~~~~~~-~~iPg~p~~~~~~~~dlp~~~~ 180 (189)
+.+. ..... ...... ..+||+++ ++.+|+|..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~lp~~~~ 192 (456)
T 2c1x_A 154 DEIREKIGVSGIQGREDELLNFIPGMSK---VRFRDLQEGIV 192 (456)
T ss_dssp HHHHHHHCSSCCTTCTTCBCTTSTTCTT---CBGGGSCTTTS
T ss_pred HHHHhccCCcccccccccccccCCCCCc---ccHHhCchhhc
Confidence 5321 11110 111122 34899986 67799998654
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.71 E-value=4e-17 Score=136.65 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=83.7
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
++.||++++++++||++|+++||++|+++||+||++++......+.+. +++++.++. +++.+....
T Consensus 11 ~~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~---------g~~~~~~~~-----~~~~~~~~~ 76 (424)
T 2iya_A 11 TPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAA---------GATPVVYDS-----ILPKESNPE 76 (424)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH---------TCEEEECCC-----CSCCTTCTT
T ss_pred ccceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhC---------CCEEEecCc-----cccccccch
Confidence 356999999999999999999999999999999999998766544432 467776652 222211100
Q ss_pred cCCCC----------------CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhH
Q 042879 86 NEMTS----------------QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 86 ~~~~~----------------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 134 (189)
+.... .+.+.+++++.++||||+|.++.|+..+|+++|||++.+++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~ 141 (424)
T 2iya_A 77 ESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFV 141 (424)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCC
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEecccc
Confidence 00000 11233444555899999999999999999999999999997653
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.59 E-value=3.3e-15 Score=123.59 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=77.8
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCC--CCCCCCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEV--GLPEGSE 83 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~~p~~~~ 83 (189)
+.+||||+++|++||++|+++||++|++|||+|||++++........ ++.+..+....... ..+....
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~ 90 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVAEA----------GLCAVDVSPGVNYAKLFVPDDTD 90 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHTT----------TCEEEESSTTCCSHHHHSCCC--
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHhc----------CCeeEecCCchhHhhhccccccc
Confidence 45799999999999999999999999999999999998865432221 24444432100000 0000000
Q ss_pred cccCCCC-------------------CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechhH
Q 042879 84 NLNEMTS-------------------QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 84 ~~~~~~~-------------------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 134 (189)
....... .+.+.+++++.+||+||+|.+..|+..+|+++|||++.++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~ 160 (400)
T 4amg_A 91 VTDPMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPA 160 (400)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTT
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeeccccc
Confidence 0000000 01122444555899999999999999999999999999876543
No 8
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.49 E-value=1.1e-13 Score=115.82 Aligned_cols=119 Identities=19% Similarity=0.300 Sum_probs=80.2
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPE 80 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~ 80 (189)
|++.+.+.||++++.++.||++|++.|+++|+++||+|+++++......+.. .+++++.++. .++.
T Consensus 1 M~~~m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~---------~g~~~~~~~~-----~~~~ 66 (430)
T 2iyf_A 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAA---------TGPRPVLYHS-----TLPG 66 (430)
T ss_dssp -------CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHT---------TSCEEEECCC-----CSCC
T ss_pred CCCccccceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHh---------CCCEEEEcCC-----cCcc
Confidence 6655445799999999999999999999999999999999998865433332 2467776652 1111
Q ss_pred CCCcc----cC----CC--------CCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 81 GSENL----NE----MT--------SQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 81 ~~~~~----~~----~~--------~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
+.... .. +. ....+.+++++.++|+||+|.+..|+..+|+++|||++.+++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~ 135 (430)
T 2iyf_A 67 PDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNL 135 (430)
T ss_dssp TTSCGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSC
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEeccc
Confidence 11000 00 00 01123345555689999999988889999999999999998654
No 9
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.47 E-value=8.7e-14 Score=116.29 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=77.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCC-ccc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSE-NLN 86 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~-~~~ 86 (189)
+||++++.+++||++|+++||++|+++||+|||+++......+.. .+++++.++.... +.+. ... ...
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~---------~g~~~~~i~~~~~-~~~~-~~~~~~~ 69 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAE---------VGVPHVPVGPSAR-APIQ-RAKPLTA 69 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH---------TTCCEEECCC---------CCSCCCH
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHH---------cCCeeeeCCCCHH-HHhh-cccccch
Confidence 389999999999999999999999999999999999875444332 2477777753210 0110 000 000
Q ss_pred -CCCC------CCCHHHhhh-hcCCCEEEeCC-Ccch--HHHHHHHhCCCeEEEechh
Q 042879 87 -EMTS------QPDMPVNLQ-EHKPNCLVADM-LFPW--ATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 87 -~~~~------~~~l~~ll~-~~~~d~vI~D~-~~~~--~~~vA~~lgiP~v~f~~~~ 133 (189)
.+.. .+.++++++ +.++||||+|. +..| +..+|+++|||++.+++++
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~ 127 (415)
T 1iir_A 70 EDVRRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCP 127 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCC
Confidence 0000 011223332 23899999998 7778 8999999999999998876
No 10
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.43 E-value=1.8e-13 Score=112.91 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=78.6
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCC-CCCCCCC--C
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVE-VGLPEGS--E 83 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~p~~~--~ 83 (189)
+.||++++.++.||++|++.|+++|+++||+|+++++......+.. .+++++.++..... .+.+... .
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~~~ 74 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKA---------AGAEVVLYKSEFDTFHVPEVVKQED 74 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH---------TTCEEEECCCGGGTSSSSSSSCCTT
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHH---------cCCEEEecccccccccccccccccc
Confidence 4599999999999999999999999999999999998655444432 24777776531000 0000000 0
Q ss_pred cccCCCC---------CCCHHHhhhhcCCCEEEeC-CCcchHHHHHHHhCCCeEEEec
Q 042879 84 NLNEMTS---------QPDMPVNLQEHKPNCLVAD-MLFPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 84 ~~~~~~~---------~~~l~~ll~~~~~d~vI~D-~~~~~~~~vA~~lgiP~v~f~~ 131 (189)
....+.. ...+.+++++.++|+||+| .+..|+..+|+++|||++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~ 132 (402)
T 3ia7_A 75 AETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTG 132 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEec
Confidence 0000000 1123345555699999999 8888899999999999999874
No 11
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.40 E-value=2e-13 Score=113.49 Aligned_cols=113 Identities=13% Similarity=0.209 Sum_probs=80.1
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCc
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSEN 84 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~ 84 (189)
+++.||++++.++.||++|++.|+++|.++||+|+++++......+.. .++++..++.. ++.....
T Consensus 18 ~~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~---------~G~~~~~~~~~-----~~~~~~~ 83 (415)
T 3rsc_A 18 RHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRA---------AGATVVPYQSE-----IIDADAA 83 (415)
T ss_dssp -CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH---------TTCEEEECCCS-----TTTCCHH
T ss_pred ccCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHh---------cCCEEEecccc-----ccccccc
Confidence 346799999999999999999999999999999999998766555443 24777776531 1110000
Q ss_pred ---c-cCC--------C-----CCCCHHHhhhhcCCCEEEeC-CCcchHHHHHHHhCCCeEEEec
Q 042879 85 ---L-NEM--------T-----SQPDMPVNLQEHKPNCLVAD-MLFPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 85 ---~-~~~--------~-----~~~~l~~ll~~~~~d~vI~D-~~~~~~~~vA~~lgiP~v~f~~ 131 (189)
. ... . ....+.+++++.+||+||+| .+..++..+|+++|||++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~ 148 (415)
T 3rsc_A 84 EVFGSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSA 148 (415)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEES
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEe
Confidence 0 000 0 01123344555589999999 7888888999999999999874
No 12
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.32 E-value=3.3e-12 Score=106.59 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=75.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCC-ccc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSE-NLN 86 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~-~~~ 86 (189)
+||++++.++.||++|++.||++|+++||+||++++......+... +++++.++... .+....... ...
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~---------g~~~~~~~~~~-~~~~~~~~~~~~~ 70 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEV---------GVPHVPVGLPQ-HMMLQEGMPPPPP 70 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH---------TCCEEECSCCG-GGCCCTTSCCCCH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc---------CCeeeecCCCH-HHHHhhccccchh
Confidence 3899999999999999999999999999999999998655444332 46777765321 011110000 000
Q ss_pred -CCCC--CCCHHHhh---h--hcCCCEEEeCC-Ccch--HHHHHHHhCCCeEEEechh
Q 042879 87 -EMTS--QPDMPVNL---Q--EHKPNCLVADM-LFPW--ATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 87 -~~~~--~~~l~~ll---~--~~~~d~vI~D~-~~~~--~~~vA~~lgiP~v~f~~~~ 133 (189)
.+.. .....+++ . ..++||||+|. +..| +..+|+++|||++.+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~ 128 (416)
T 1rrv_A 71 EEEQRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSP 128 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0000 00011122 2 23799999997 4556 7899999999999987765
No 13
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.21 E-value=1.3e-11 Score=101.58 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=76.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCC-------CCCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEV-------GLPE 80 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~-------~~p~ 80 (189)
+||++++.++.||++|++.|+++|+++||+|+++++......+.. .+++++.++.....+ +.+.
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTG---------VGLPAVATTDLPIRHFITTDREGRPE 71 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH---------TTCCEEESCSSCHHHHHHBCTTSCBC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHh---------CCCEEEEeCCcchHHHHhhhcccCcc
Confidence 389999999999999999999999999999999998754433332 246666654211000 0110
Q ss_pred CCCc----ccCC-C---------CCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 81 GSEN----LNEM-T---------SQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 81 ~~~~----~~~~-~---------~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
.... ...+ . ....+.+++++.+||+||+|.+..|+..+|+.+|||++.++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~ 137 (384)
T 2p6p_A 72 AIPSDPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWD 137 (384)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCS
T ss_pred ccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccC
Confidence 0000 0000 0 0011223344458999999998888889999999999988754
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.21 E-value=6e-12 Score=105.86 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=79.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCC-------
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLP------- 79 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p------- 79 (189)
..||++++.++.||++|++.|+++|.++||+|+++++......+.. .+++++.++.....+++.
T Consensus 20 ~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~---------~G~~~~~i~~~~~~~~~~~~~~~~~ 90 (441)
T 2yjn_A 20 HMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITA---------AGLTAVPVGTDVDLVDFMTHAGHDI 90 (441)
T ss_dssp CCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHT---------TTCCEEECSCCCCHHHHHHHTTHHH
T ss_pred ccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHh---------CCCceeecCCccchHHHhhhhhccc
Confidence 4699999999999999999999999999999999998765433332 247777765321000000
Q ss_pred ------CC-----CC--c----------ccC-CCC-C--C-CHHH---hhhhcCCCEEEeCCCcchHHHHHHHhCCCeEE
Q 042879 80 ------EG-----SE--N----------LNE-MTS-Q--P-DMPV---NLQEHKPNCLVADMLFPWATDAAAKFGIPRLV 128 (189)
Q Consensus 80 ------~~-----~~--~----------~~~-~~~-~--~-~l~~---ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 128 (189)
.+ .. . ... ... . . .+.+ ++++.++|+||+|.+..|+..+|+++|||++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~ 170 (441)
T 2yjn_A 91 IDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHAR 170 (441)
T ss_dssp HHHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEE
T ss_pred ccccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEE
Confidence 00 00 0 000 000 0 1 2333 33445899999999888889999999999999
Q ss_pred Eechh
Q 042879 129 FHGTS 133 (189)
Q Consensus 129 f~~~~ 133 (189)
+....
T Consensus 171 ~~~~~ 175 (441)
T 2yjn_A 171 LLWGP 175 (441)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 86543
No 15
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.15 E-value=6e-11 Score=98.26 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=79.0
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCC-C------
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVG-L------ 78 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~------ 78 (189)
+++||+++..++.||++|++.|+++|.++||+|+++++ .....+.. .+++++.++....... +
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~---------~G~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAA---------AGLEVVDVAPDYSAVKVFEQVAKD 88 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHT---------TTCEEEESSTTCCHHHHHHHHHHH
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHh---------CCCeeEecCCccCHHHHhhhcccC
Confidence 35699999999999999999999999999999999998 54444432 2477776652100000 0
Q ss_pred -C--------CCCCcccCCC---------CCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 79 -P--------EGSENLNEMT---------SQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 79 -p--------~~~~~~~~~~---------~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
+ .......... ....+.+++++.+||+||+|....++..+|+.+|||++.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~ 160 (398)
T 3oti_A 89 NPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQS 160 (398)
T ss_dssp CHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCT
T ss_pred CccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEecc
Confidence 0 0000000000 0122445566669999999988888889999999999987654
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.13 E-value=1.3e-10 Score=96.19 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=78.0
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCC--------C
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVE--------V 76 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~--------~ 76 (189)
+.++||+++..++.||++|++.|+++|.++||+|+++++......+... ++.++.++..... .
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~---------G~~~~~~~~~~~~~~~~~~~~~ 83 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGA---------GLPFAPTCPSLDMPEVLSWDRE 83 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHT---------TCCEEEEESSCCHHHHHSBCTT
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhC---------CCeeEecCCccchHhhhhhhcc
Confidence 3467999999999999999999999999999999999986554444332 3566666421000 0
Q ss_pred CCCCCCC--c---ccCCC---------CCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 77 GLPEGSE--N---LNEMT---------SQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 77 ~~p~~~~--~---~~~~~---------~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
+.+.... . ..... ....+.+++++.+||+||+|....++..+|+.+|||++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~ 153 (398)
T 4fzr_A 84 GNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIR 153 (398)
T ss_dssp SCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCS
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccC
Confidence 0000000 0 00000 0012335555568999999988788889999999999987754
No 17
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.09 E-value=1.6e-10 Score=95.18 Aligned_cols=116 Identities=11% Similarity=0.180 Sum_probs=74.2
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEe-eCCCC-C----CCCCCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTI-KFPSV-E----VGLPEG 81 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l-p~~~~-~----~~~p~~ 81 (189)
+||+++..++.||++|++.|+++|.++||+|+++++......+.. .+++++.+ ..... . +..+..
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~ 72 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHG---------AGLTTAGIRGNDRTGDTGGTTQLRFP 72 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHH---------BTCEEEEC--------------CCSC
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHh---------CCCceeeecCCccchhhhhhhccccc
Confidence 589999999999999999999999999999999997644333332 23555555 21100 0 000000
Q ss_pred CCcccCCCC---------------------CCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 82 SENLNEMTS---------------------QPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 82 ~~~~~~~~~---------------------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
......... ...+.+++++.+||+||+|.+..++..+|+.+|||++.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~ 144 (391)
T 3tsa_A 73 NPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWG 144 (391)
T ss_dssp CGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCS
T ss_pred ccccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecC
Confidence 000000000 112234555569999999987777888999999999988543
No 18
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.06 E-value=5.7e-10 Score=92.92 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=73.8
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCC--Ccc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGS--ENL 85 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~--~~~ 85 (189)
+||+++..+..||++|++.|+++|.++||+|+|+++......+... ++++..++.... .. .+. ...
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~---------g~~~~~l~~~~~--~~-~~~~~~~~ 68 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEV---------GVPMVPVGRAVR--AG-AREPGELP 68 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHT---------TCCEEECSSCSS--GG-GSCTTCCC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc---------CCceeecCCCHH--HH-hccccCCH
Confidence 3799999999999999999999999999999999987655444432 467766652211 00 000 000
Q ss_pred cCCCC--CCCHHHhhhh-----cCCCEEEeCCCcchH---HHHHHHhCCCeEEEechhH
Q 042879 86 NEMTS--QPDMPVNLQE-----HKPNCLVADMLFPWA---TDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 86 ~~~~~--~~~l~~ll~~-----~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~~~~a 134 (189)
..+.. ...+.+.++. .++|+||+|....++ ..+|+++|||++..+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~ 127 (404)
T 3h4t_A 69 PGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPD 127 (404)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCc
Confidence 00100 0011111111 179999999766554 6889999999998776543
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.01 E-value=9.8e-10 Score=90.88 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=78.4
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCC------------
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFP------------ 72 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~------------ 72 (189)
..++||+++..++.||++|++.|+++|.++||+|+++++......+.. .++++..++..
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRK---------LGFEPVATGMPVFDGFLAALRIR 88 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH---------TTCEEEECCCCHHHHHHHHHHHH
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHh---------cCCceeecCcccccchhhhhhhh
Confidence 346799999999999999999999999999999999998754333322 24677666420
Q ss_pred CCCCCCCCCCCcccCCC-------CC------CCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 73 SVEVGLPEGSENLNEMT-------SQ------PDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 73 ~~~~~~p~~~~~~~~~~-------~~------~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
....+.+. ......+. .. ..+.+++++.+||+||+|.+..++..+|+.+|||++.+...
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~ 160 (412)
T 3otg_A 89 FDTDSPEG-LTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVG 160 (412)
T ss_dssp HSCSCCTT-CCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCS
T ss_pred hcccCCcc-CChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEeccc
Confidence 00000110 00000000 00 22335555569999999987777888999999999886544
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.52 E-value=3.5e-07 Score=75.18 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=66.8
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH-HHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT-LFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
+.+|++......||++|.+.||++|.++||+|+|+++..... .+-. ..++.++.++.. +++.. ...
T Consensus 2 ~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~--------~~g~~~~~i~~~----~~~~~-~~~ 68 (365)
T 3s2u_A 2 KGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVP--------KAGLPLHLIQVS----GLRGK-GLK 68 (365)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTG--------GGTCCEEECC---------------
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhh--------hcCCcEEEEECC----CcCCC-CHH
Confidence 347888765445999999999999999999999999865322 1111 024666666421 22110 000
Q ss_pred cCCCC-------CCCHHHhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEe
Q 042879 86 NEMTS-------QPDMPVNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 86 ~~~~~-------~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 130 (189)
..+.. ....++++++.+||+||++.-... +...|+.+|||.++.-
T Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe 122 (365)
T 3s2u_A 69 SLVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHE 122 (365)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEe
Confidence 11110 011235566669999999965543 3466889999999753
No 21
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=97.88 E-value=3.6e-05 Score=62.13 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=69.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
.+|+++.....||..++..|++.|.++||+|++++....... .... ..++++..++.. +++... ....
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~--~~~~-----~~g~~~~~~~~~----~~~~~~-~~~~ 74 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEA--DLVP-----KHGIEIDFIRIS----GLRGKG-IKAL 74 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHH--HHGG-----GGTCEEEECCCC----CCTTCC-HHHH
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchh--hhcc-----ccCCceEEecCC----ccCcCc-cHHH
Confidence 689999876669999999999999999999999997653211 1110 124666666432 111100 0000
Q ss_pred CC-------CCCCHHHhhhhcCCCEEEeCCCc--chHHHHHHHhCCCeEEEec
Q 042879 88 MT-------SQPDMPVNLQEHKPNCLVADMLF--PWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 88 ~~-------~~~~l~~ll~~~~~d~vI~D~~~--~~~~~vA~~lgiP~v~f~~ 131 (189)
+. ....+.+++++.++|+|+++... .++..+|+.+|+|++....
T Consensus 75 ~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~ 127 (364)
T 1f0k_A 75 IAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQ 127 (364)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEec
Confidence 00 01123355555699999998643 2345678889999987554
No 22
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=96.31 E-value=0.02 Score=48.04 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=67.6
Q ss_pred CCCCCCccEEEEecC---C------------CCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccC--CCc
Q 042879 1 MAGEIRKLHIIFFPL---M------------AHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANEL--GIE 63 (189)
Q Consensus 1 m~~~~~~~hvl~~p~---p------------~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~--~~~ 63 (189)
|..++++.+|+++.. | ..|.-.-+..|++.|+++||+|++++.................. ..+
T Consensus 1 m~~m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~g 80 (499)
T 2r60_A 1 MVEMTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNK 80 (499)
T ss_dssp ------CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSS
T ss_pred CccccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCC
Confidence 444444578999874 2 35777889999999999999999998654321101100000000 236
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccCCCC-CCCHHHhhhh--cCCCEEEeCCCcc--hHHHHHHHhCCCeEEEech
Q 042879 64 IDIKTIKFPSVEVGLPEGSENLNEMTS-QPDMPVNLQE--HKPNCLVADMLFP--WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 64 i~~~~lp~~~~~~~~p~~~~~~~~~~~-~~~l~~ll~~--~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~ 132 (189)
++++.++..... ..... .....+.. ...+.+++++ .++|+|.+-.... .+..+++.+|+|.+...-.
T Consensus 81 v~v~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~H~ 152 (499)
T 2r60_A 81 VRIVRIPFGGDK-FLPKE-ELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHS 152 (499)
T ss_dssp EEEEEECCSCSS-CCCGG-GCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEEECSS
T ss_pred eEEEEecCCCcC-CcCHH-HHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEEEccC
Confidence 788777632110 00000 00000000 0123455655 4799988765322 2335678899998865544
No 23
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=95.43 E-value=0.033 Score=45.06 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=62.5
Q ss_pred ccEEEEecCCCC-cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 7 KLHIIFFPLMAH-GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 7 ~~hvl~~p~p~~-GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
++.+....+|.. |.-.-+..|++.|+++||+|++++...... ... ...++.+..++.. ..+......
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~-------~~~~i~~~~~~~~----~~~~~~~~~ 82 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFR-LNK-------VYPNIYFHEVTVN----QYSVFQYPP 82 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-----C-------CCTTEEEECCCCC--------CCSCC
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCc-ccc-------cCCceEEEecccc----ccccccccc
Confidence 456777777765 677888999999999999999998754321 110 1135666555421 111000000
Q ss_pred cCCCCCCCHHHhhhhcCCCEEEeCCCcc--hHHHHHHHh---CCCeEEEech
Q 042879 86 NEMTSQPDMPVNLQEHKPNCLVADMLFP--WATDAAAKF---GIPRLVFHGT 132 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~l---giP~v~f~~~ 132 (189)
..+.....+.+++++.++|+|++..... +...+++++ ++|.+...-.
T Consensus 83 ~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 134 (394)
T 2jjm_A 83 YDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHG 134 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCH
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 0000011234556666999999875433 234455544 5998776544
No 24
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=94.98 E-value=0.04 Score=44.19 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=65.1
Q ss_pred ccEEEEecC--C--CCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCC
Q 042879 7 KLHIIFFPL--M--AHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGS 82 (189)
Q Consensus 7 ~~hvl~~p~--p--~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~ 82 (189)
+.+|+++.. + ..|.-.-+..|++.| +||+|++++............ ...++.+..++... .++
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~--- 70 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYD-----KTLDYEVIRWPRSV---MLP--- 70 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHH-----TTCSSEEEEESSSS---CCS---
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhc-----cccceEEEEccccc---ccc---
Confidence 457877753 3 458888999999999 799999999876543212111 12356776664210 010
Q ss_pred CcccCCCCCCCHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEE
Q 042879 83 ENLNEMTSQPDMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVF 129 (189)
Q Consensus 83 ~~~~~~~~~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f 129 (189)
.. .....+.+++++.++|+|++..... +....++++|+|.+++
T Consensus 71 -~~---~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 71 -TP---TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp -CH---HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred -ch---hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 00 0012355677777999998765433 4456789999995543
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=91.23 E-value=0.3 Score=39.00 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=56.8
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHHhhhccccccCCCceEE-EEeeCCCCCCCCCCCCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLFSKAIPRANELGIEIDI-KTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~~p~~~~~~ 85 (189)
.+|+++..- .+....+..|++.|.++ ||+|.++.+............. .++.+ ..++.. + ......
T Consensus 6 mkIl~v~~~-~~~~~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----~--~~~~~~ 73 (376)
T 1v4v_A 6 KRVVLAFGT-RPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSL-----FGIQEDRNLDVM----Q--ERQALP 73 (376)
T ss_dssp EEEEEEECS-HHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHT-----TTCCCSEECCCC----S--SCCCHH
T ss_pred eEEEEEEec-cHHHHHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHH-----cCCCcccccccC----C--CCccHH
Confidence 578887632 22334467789999888 8998877665433222111110 11221 122110 0 000000
Q ss_pred cCCC-CCCCHHHhhhhcCCCEEEe--CCCcchH-HHHHHHhCCCeEEEe
Q 042879 86 NEMT-SQPDMPVNLQEHKPNCLVA--DMLFPWA-TDAAAKFGIPRLVFH 130 (189)
Q Consensus 86 ~~~~-~~~~l~~ll~~~~~d~vI~--D~~~~~~-~~vA~~lgiP~v~f~ 130 (189)
..+. ....+.+++++.+||+|++ +....|. ..+|+.+|||.+.+.
T Consensus 74 ~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~ 122 (376)
T 1v4v_A 74 DLAARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVE 122 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEe
Confidence 0000 0112446666679999988 3333343 567889999987653
No 26
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=89.97 E-value=0.4 Score=39.02 Aligned_cols=121 Identities=11% Similarity=0.144 Sum_probs=65.3
Q ss_pred CccEEEEecC---C--------CCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCC
Q 042879 6 RKLHIIFFPL---M--------AHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSV 74 (189)
Q Consensus 6 ~~~hvl~~p~---p--------~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~ 74 (189)
++++|+++.. | ..|+-..+..|++.|+++||+|++++....... ... . ....+++++.++....
T Consensus 19 ~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~-~~~-~---~~~~~v~v~~~~~~~~ 93 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQ-GEI-V---RVAENLRVINIAAGPY 93 (438)
T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGG-CSE-E---EEETTEEEEEECCSCS
T ss_pred chheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCC-ccc-c---cccCCeEEEEecCCCc
Confidence 4569999984 3 358889999999999999999999987643211 000 0 0013577777653210
Q ss_pred CCCCCCCCCcccCCCC-CCCHHHh-hhhc-CCCEEEeCCCcc--hHHHHHHHhCCCeEEEechh
Q 042879 75 EVGLPEGSENLNEMTS-QPDMPVN-LQEH-KPNCLVADMLFP--WATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 75 ~~~~p~~~~~~~~~~~-~~~l~~l-l~~~-~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~ 133 (189)
..++.. .....+.. ...+.++ ++.. ++|+|++..... .+..+++.+|+|++...-..
T Consensus 94 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 155 (438)
T 3c48_A 94 -EGLSKE-ELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTL 155 (438)
T ss_dssp -SSCCGG-GGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred -cccchh-HHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCC
Confidence 011000 00000000 0001122 3333 499998865332 23356778899998765443
No 27
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=89.84 E-value=0.5 Score=38.18 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.4
Q ss_pred ccEEEEecC---C--CCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPL---M--AHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~---p--~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+++|+++.. | ..|--.-+..|++.|+++||+|+++++..
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 45 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSH 45 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 568888773 2 34555678999999999999999999653
No 28
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=89.84 E-value=0.28 Score=38.61 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCC
Q 042879 14 PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPD 93 (189)
Q Consensus 14 p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~ 93 (189)
+--|.||+.=.+.||++|. +|+|++.......+.. .++.+..++. + ..+.
T Consensus 11 ~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~---------~g~~v~~l~~--------~---------d~~~ 60 (282)
T 3hbm_A 11 SQIGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDE---------IPYPVYELSS--------E---------SIYE 60 (282)
T ss_dssp TTTBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGG---------CCSCEEECSS--------S---------CHHH
T ss_pred CCccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHH---------CCCeEEEcCc--------c---------CHHH
Confidence 3457899999999999998 7999986532211111 1233333320 0 0122
Q ss_pred HHHhhhhcCCCEEEeCCCcchH---HHHHHHhCCCeEEEec
Q 042879 94 MPVNLQEHKPNCLVADMLFPWA---TDAAAKFGIPRLVFHG 131 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~~ 131 (189)
+.+++++.++|+||.|...... ..+.+..|++.+++==
T Consensus 61 ~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~iDD 101 (282)
T 3hbm_A 61 LINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDD 101 (282)
T ss_dssp HHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEEEec
Confidence 4466666689999999876533 3444446877766543
No 29
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=87.58 E-value=0.83 Score=35.86 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.6
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 18 HGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 18 ~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.|.-.-...|++.|.++||+|++++...
T Consensus 30 gG~~~~~~~l~~~L~~~G~~v~v~~~~~ 57 (342)
T 2iuy_A 30 GGIQWVVANLMDGLLELGHEVFLLGAPG 57 (342)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEESCTT
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5777889999999999999999998764
No 30
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=87.40 E-value=0.42 Score=38.17 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=56.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCC-eEEEEeCCcchHHHhhhccccccCCCceEE-EEeeCCCCCCCCCCCCCccc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGV-KTTVITTPANATLFSKAIPRANELGIEIDI-KTIKFPSVEVGLPEGSENLN 86 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~-~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~~p~~~~~~~ 86 (189)
+|+++.. ..++...+..|+++|.++|+ ++.++.+............. .++.+ ..++.. + .. ....
T Consensus 2 kIl~v~~-~~~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----~--~~-~~~~ 68 (384)
T 1vgv_A 2 KVLTVFG-TRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKL-----FSIVPDYDLNIM----Q--PG-QGLT 68 (384)
T ss_dssp EEEEEEC-SHHHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHH-----HTCCCSEECCCC----S--TT-SCHH
T ss_pred eEEEEec-ccHHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHH-----cCCCCCcceecC----C--CC-ccHH
Confidence 6777653 24667788999999999984 88776544322111111100 01222 222110 0 00 0000
Q ss_pred C-CC-CCCCHHHhhhhcCCCEEEeCC--CcchH-HHHHHHhCCCeEEEec
Q 042879 87 E-MT-SQPDMPVNLQEHKPNCLVADM--LFPWA-TDAAAKFGIPRLVFHG 131 (189)
Q Consensus 87 ~-~~-~~~~l~~ll~~~~~d~vI~D~--~~~~~-~~vA~~lgiP~v~f~~ 131 (189)
. .. ....+.+++++.+||+|++-. ...|. ..+|+..|+|.+....
T Consensus 69 ~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~ 118 (384)
T 1vgv_A 69 EITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEA 118 (384)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEec
Confidence 0 00 012244666666999988732 33343 4567888999887544
No 31
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=84.77 E-value=0.88 Score=41.18 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=61.9
Q ss_pred cEEEEecCCCC-------------cChHHHH--------HHHHHHhhCCCeEE----EEeCCcchHHHhhhccccc--cC
Q 042879 8 LHIIFFPLMAH-------------GHMIPLV--------DMAKLFGSRGVKTT----VITTPANATLFSKAIPRAN--EL 60 (189)
Q Consensus 8 ~hvl~~p~p~~-------------GH~~P~l--------~La~~La~~G~~Vt----~~t~~~~~~~~~~~~~~~~--~~ 60 (189)
.+|+++..-|. |...=.+ +||++|+++||+|| ++|-......-..+..... ..
T Consensus 279 ~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~ 358 (816)
T 3s28_A 279 FNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYD 358 (816)
T ss_dssp CEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTT
T ss_pred eEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceeecC
Confidence 47888776553 4444455 58888889999987 7775432211011100000 11
Q ss_pred CCceEEEEeeCCCCCCCCCCCCCcccCCCC-C-----CCHHHhhhhc--CCCEEEeCCCc-ch-HHHHHHHhCCCeEEEe
Q 042879 61 GIEIDIKTIKFPSVEVGLPEGSENLNEMTS-Q-----PDMPVNLQEH--KPNCLVADMLF-PW-ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 61 ~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~-~-----~~l~~ll~~~--~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~ 130 (189)
..+++++.+|+.... ++-...-....+.. . ..++.+++.. +||+|.+-... .+ +..+|+.+|||.+...
T Consensus 359 ~~gv~I~RvP~~~~~-g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~ 437 (816)
T 3s28_A 359 SEYCDILRVPFRTEK-GIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 437 (816)
T ss_dssp CSSEEEEEECEEETT-EEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cCCeEEEEecCCCcc-ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHHcCCCEEEEE
Confidence 136888888753210 10000000011110 0 1122333332 69999875422 22 4577899999988754
Q ss_pred c
Q 042879 131 G 131 (189)
Q Consensus 131 ~ 131 (189)
-
T Consensus 438 H 438 (816)
T 3s28_A 438 H 438 (816)
T ss_dssp S
T ss_pred e
Confidence 3
No 32
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=84.16 E-value=0.97 Score=35.66 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=28.9
Q ss_pred EEEEec---CCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFP---LMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p---~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+|+++. .|..|.-.-+..|++.|+++||+|++++..
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 40 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQS 40 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESE
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecC
Confidence 456553 245677888999999999999999999875
No 33
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=83.54 E-value=1.7 Score=34.63 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=61.3
Q ss_pred CccEEEEecC---CC-CcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCC
Q 042879 6 RKLHIIFFPL---MA-HGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEG 81 (189)
Q Consensus 6 ~~~hvl~~p~---p~-~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~ 81 (189)
++++|+++.. +. .|+-.-+..|++.|.++||+|++++............. . ..++..++.. + .
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~----~--~~~~~~~~~~----~---~ 85 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVV----S--GGKAVPIPYN----G---S 85 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEE----E--CCCCC--------------
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccc----c--CCcEEecccc----C---C
Confidence 3568888863 22 46668899999999999999999997654321111100 0 0012222210 0 0
Q ss_pred CCcccCCC--CCCCHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEEech
Q 042879 82 SENLNEMT--SQPDMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 82 ~~~~~~~~--~~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~ 132 (189)
.... ... ....+.+++++.++|+|++..... ++..+++..|+|.+...-.
T Consensus 86 ~~~~-~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 139 (406)
T 2gek_A 86 VARL-RFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHT 139 (406)
T ss_dssp ------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECC
T ss_pred cccc-cccHHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcC
Confidence 0000 000 002344666666899988776443 3456677789999876543
No 34
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=82.82 E-value=2.3 Score=34.25 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=32.1
Q ss_pred CccEEEEecC-C-CCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 6 RKLHIIFFPL-M-AHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 6 ~~~hvl~~p~-p-~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
++.+|+++.. + ..|+-..+..|++.|.++||+|++++....
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 3457776654 3 348888999999999999999999887654
No 35
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=82.59 E-value=0.98 Score=37.17 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=29.0
Q ss_pred CccEEEEecCC---C--CcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 6 RKLHIIFFPLM---A--HGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 6 ~~~hvl~~p~p---~--~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.+.+|+++..- + .|=.+-+.+|+++|+++||+|++++...
T Consensus 45 ~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 45 KGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp CSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred CCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 34677766532 2 1323568999999999999999999764
No 36
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=82.49 E-value=1.9 Score=36.81 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCccEEEEecC---CC---CcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 5 IRKLHIIFFPL---MA---HGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 5 ~~~~hvl~~p~---p~---~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
++++||+++.. |. .|=-.-+-.|+|+|+++||+|+++++.
T Consensus 7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 56789999963 32 232245678999999999999999853
No 37
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=81.97 E-value=1.8 Score=33.39 Aligned_cols=111 Identities=18% Similarity=0.325 Sum_probs=57.0
Q ss_pred cEEEEecCCCCcChHH-HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCC--CCCCCCCCCCc
Q 042879 8 LHIIFFPLMAHGHMIP-LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPS--VEVGLPEGSEN 84 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P-~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~~~~~p~~~~~ 84 (189)
+|||+.- --|-..| +..|++.|.+.| +|+++.+..+.+.....+. ....+++....... .-+|-|.++-.
T Consensus 2 p~ILlTN--DDGi~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT----~~~pl~~~~~~~~~~~~v~GTPaDCV~ 74 (251)
T 2wqk_A 2 PTFLLVN--DDGYFSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLT----FTEPLKMRKIDTDFYTVIDGTPADCVH 74 (251)
T ss_dssp CEEEEEC--SSCTTCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCC----CSSCEEEEEEETTEEEETTCCHHHHHH
T ss_pred CEEEEEc--CCCCCcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCcC----CCCCceeEEeeccceeecCCChHHHHh
Confidence 4566655 3344444 445778887788 6998887765533222211 11235555442100 00111111100
Q ss_pred ccCCCCCCCHHHhhhhcCCCEEEe----------CCCcchH---HHHHHHhCCCeEEEech
Q 042879 85 LNEMTSQPDMPVNLQEHKPNCLVA----------DMLFPWA---TDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 85 ~~~~~~~~~l~~ll~~~~~d~vI~----------D~~~~~~---~~vA~~lgiP~v~f~~~ 132 (189)
-.+..++.+.+||+||+ |.+...+ ..=|.-+|||.+.|+-.
T Consensus 75 -------lal~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~ 128 (251)
T 2wqk_A 75 -------LGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp -------HHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -------hhhhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcc
Confidence 01223444447999998 4444433 34456789999998853
No 38
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=81.05 E-value=1.7 Score=35.53 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=56.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH-HHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT-LFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
++.++. ...--+.-|..+.++|.++ ++..++.|..... .+..... ..-+| +.|.. .+..+......
T Consensus 11 ~~~~v~-GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~----~~~~i-----~~~~~--~l~~~~~~~~~ 77 (385)
T 4hwg_A 11 KVMTIV-GTRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFF----DDMGI-----RKPDY--FLEVAADNTAK 77 (385)
T ss_dssp EEEEEE-CSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHH----C-CCC-----CCCSE--ECCCCCCCSHH
T ss_pred heeEEE-EcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHH----hhCCC-----CCCce--ecCCCCCCHHH
Confidence 444443 3455667777788888776 8887777764432 2322110 01111 11100 11101000000
Q ss_pred -CC-CCCCHHHhhhhcCCCEEEe--CCCcchHHHHHHHhCCCeEEEec
Q 042879 88 -MT-SQPDMPVNLQEHKPNCLVA--DMLFPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 88 -~~-~~~~l~~ll~~~~~d~vI~--D~~~~~~~~vA~~lgiP~v~f~~ 131 (189)
+. ....+++++++.+||+|+. |....|+...|.++|||.+.+..
T Consensus 78 ~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~ea 125 (385)
T 4hwg_A 78 SIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEA 125 (385)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEeC
Confidence 00 0123456777779998765 44555667788999999877653
No 39
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=77.60 E-value=5.1 Score=29.54 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=39.8
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSK 52 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~ 52 (189)
++.+|++...++..|-....-++..|..+|++|.++...-....+..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~ 133 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVE 133 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 35689999999999999999999999999999999987655555443
No 40
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=76.71 E-value=3.2 Score=34.21 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=28.1
Q ss_pred EEEEecC---C---CCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPL---M---AHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~---p---~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+|+++.. | ..|=-.-+..|++.|+++||+|++++...
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~ 44 (485)
T 1rzu_A 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY 44 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECC
T ss_pred eEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 6777653 2 23545678899999999999999998754
No 41
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=75.88 E-value=5.3 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=36.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
+++|++...++.+|-.-..=++..|..+|++|..+........+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~ 46 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELF 46 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 56899999999999999999999999999999988765444443
No 42
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=74.97 E-value=3.9 Score=33.68 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=27.6
Q ss_pred EEEEecC---C---CCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPL---M---AHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~---p---~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+|+++.. | ..|=-.-+..|++.|+++||+|++++...
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~ 44 (485)
T 2qzs_A 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF 44 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred eEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCc
Confidence 6777653 2 23444667889999999999999999754
No 43
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=74.90 E-value=2.5 Score=34.64 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=21.9
Q ss_pred HHhhhhcCCCEEEe--CCCcchHHHHHHHhCCCe
Q 042879 95 PVNLQEHKPNCLVA--DMLFPWATDAAAKFGIPR 126 (189)
Q Consensus 95 ~~ll~~~~~d~vI~--D~~~~~~~~vA~~lgiP~ 126 (189)
+++.++.++|.|+. |.....+..+|+++|+|.
T Consensus 68 ~~~~~~~~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 68 RQTFVEFPFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp HHHHHHSCCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred HHhhhhcCCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 34444558998875 444445678899999994
No 44
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=74.37 E-value=5 Score=28.51 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=38.5
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
++++|++...++.+|-.-..-++..|..+|++|.++........+.
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv 62 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVA 62 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 4679999999999999999999999999999999987655444443
No 45
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=73.60 E-value=25 Score=26.46 Aligned_cols=38 Identities=13% Similarity=-0.106 Sum_probs=28.0
Q ss_pred cEEEEecCC-CCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLM-AHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p-~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..|-++..+ +.|--.-+++.++++..+|.+|-+++...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 356666655 66888888888888888898887776643
No 46
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=73.09 E-value=6.5 Score=30.17 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=37.9
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
++.+|++...++..|-....=++..|..+|++|.++...-....+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l 166 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEV 166 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 467899999999999999999999999999999998765444333
No 47
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.07 E-value=8.6 Score=29.15 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=36.3
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+.+|++..-||.|--.-++.+|.+|+++|++|.++....
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34668899999999999999999999999999998887765
No 48
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=71.85 E-value=5.3 Score=27.38 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=27.6
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHh-------CCCeEEEechhH
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKF-------GIPRLVFHGTSF 134 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~~~~a 134 (189)
+++++.+||+||.|..++. +.++++++ ++|.+.++..+-
T Consensus 51 ~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 51 PMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp HHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCC
Confidence 3444558999999999984 56776654 588877766543
No 49
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=71.31 E-value=3.1 Score=33.85 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=57.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHHhhhccccccCCCceEE-EEeeCCCCCCCCCCCCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLFSKAIPRANELGIEIDI-KTIKFPSVEVGLPEGSEN 84 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~~p~~~~~ 84 (189)
+.+|+++.- ......=+..|.++|.++ |+++.++.|..... +....... .+++. ..+. +......
T Consensus 25 m~ki~~v~G-tr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~-~~~~~~~~----~~i~~~~~l~-------~~~~~~~ 91 (396)
T 3dzc_A 25 MKKVLIVFG-TRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHRE-MLDQVLEL----FSITPDFDLN-------IMEPGQT 91 (396)
T ss_dssp CEEEEEEEC-SHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSH-HHHHHHHH----TTCCCSEECC-------CCCTTCC
T ss_pred CCeEEEEEe-ccHhHHHHHHHHHHHHhCCCCcEEEEEecccHH-HHHHHHHh----cCCCCceeee-------cCCCCCC
Confidence 457777663 345677778888889887 78887666544321 11111000 01110 1111 1000000
Q ss_pred c-cCCC-CCCCHHHhhhhcCCCEEEe--CCCcchH-HHHHHHhCCCeEEEe
Q 042879 85 L-NEMT-SQPDMPVNLQEHKPNCLVA--DMLFPWA-TDAAAKFGIPRLVFH 130 (189)
Q Consensus 85 ~-~~~~-~~~~l~~ll~~~~~d~vI~--D~~~~~~-~~vA~~lgiP~v~f~ 130 (189)
. ..+. ....+++++++.+||+|+. |....|+ ...|+.+|||.+.+.
T Consensus 92 ~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ 142 (396)
T 3dzc_A 92 LNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVE 142 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEET
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 0 0000 0123456667779998765 3344354 577899999988763
No 50
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.30 E-value=8.6 Score=28.67 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=39.2
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
++.+|++...++..|-.-..=++..|..+|++|..+...-....+.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv 136 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVV 136 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHH
Confidence 4679999999999999999999999999999999998766555543
No 51
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=70.53 E-value=27 Score=27.19 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=58.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHhhhccccccCCCce-EEEEeeCCCCCCCCCCCCCcc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFSKAIPRANELGIEI-DIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i-~~~~lp~~~~~~~~p~~~~~~ 85 (189)
+|+++-.-+.|=+.=...+.+.|.++ |.+|++++.+.....+.. .+.+ +++.++.. ... ..
T Consensus 2 kILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~--------~p~i~~v~~~~~~----~~~---~~- 65 (348)
T 1psw_A 2 KILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSR--------MPEVNEAIPMPLG----HGA---LE- 65 (348)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTT--------CTTEEEEEEC--------------C-
T ss_pred eEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhc--------CCccCEEEEecCC----ccc---cc-
Confidence 78888877778887788888888875 999999999765543322 1334 34443210 000 00
Q ss_pred cCCCCCCCHHHhhhhcCCCEEEeCCCcc-hHHHHHHHhCCCeEEE
Q 042879 86 NEMTSQPDMPVNLQEHKPNCLVADMLFP-WATDAAAKFGIPRLVF 129 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~f 129 (189)
+.....+.+.+++.++|++| |.... ....++...|+|..+.
T Consensus 66 --~~~~~~l~~~l~~~~~D~vi-d~~~~~~sa~~~~~~~~~~~ig 107 (348)
T 1psw_A 66 --IGERRKLGHSLREKRYDRAY-VLPNSFKSALVPLFAGIPHRTG 107 (348)
T ss_dssp --HHHHHHHHHHTTTTTCSEEE-ECSCCSGGGHHHHHTTCSEEEE
T ss_pred --hHHHHHHHHHHHhcCCCEEE-ECCCChHHHHHHHHhCCCEEec
Confidence 00000122333444799888 54332 3456777889997443
No 52
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=69.89 E-value=5.4 Score=27.49 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.3
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.||+++- .|++- ..+++.|.++|++|+++...
T Consensus 3 ~~~vlI~G---~G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCG---HSILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEEC---CSHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEEC---CCHHH--HHHHHHHHHCCCCEEEEECC
Confidence 45888874 46664 78899999999999999874
No 53
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=68.11 E-value=9.7 Score=26.97 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCCCCccEEEEecCCCCcChHH-HHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 2 AGEIRKLHIIFFPLMAHGHMIP-LVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 2 ~~~~~~~hvl~~p~p~~GH~~P-~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
-+++...-++++-.|-.-=.+| .+-|+.+|..+|++|++..++.....++
T Consensus 2 ~~~~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLle 52 (157)
T 1kjn_A 2 KTESTGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQ 52 (157)
T ss_dssp ----CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred ccccceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhhee
Confidence 3333334566667776644444 5678899999999999999886544333
No 54
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=66.38 E-value=6.8 Score=30.22 Aligned_cols=97 Identities=18% Similarity=0.307 Sum_probs=51.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCC--CCCCCCCCCCcccCCCCCCCHHHhhhhc
Q 042879 24 LVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPS--VEVGLPEGSENLNEMTSQPDMPVNLQEH 101 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~~~~~p~~~~~~~~~~~~~~l~~ll~~~ 101 (189)
+..|++.|.+.| +|+++.+..+.+.....+. ....+++..+.... .-+|-|.++-. -.+..++...
T Consensus 17 i~aL~~~l~~~g-~V~VVAP~~~~Sg~g~sit----~~~pl~~~~~~~~~~~~v~GTPaDCV~-------lal~~l~~~~ 84 (251)
T 2phj_A 17 INALREALKSLG-RVVVVAPDRNLSGVGHSLT----FTEPLKMRKIDTDFYTVIDGTPADCVH-------LGYRVILEEK 84 (251)
T ss_dssp HHHHHHHHTTTS-EEEEEEESSCCTTSCCSCC----CSSCEEEEEEETTEEEETTCCHHHHHH-------HHHHTTTTTC
T ss_pred HHHHHHHHHhcC-CEEEEecCCCccCCcccee----cCCCeEEEEecCCCeEEECCCHHHHHH-------HHHHHhcCCC
Confidence 567888898888 9999988766543322211 11235655543100 00111111100 0122333323
Q ss_pred CCCEEEeC----------CCcchH---HHHHHHhCCCeEEEech
Q 042879 102 KPNCLVAD----------MLFPWA---TDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 102 ~~d~vI~D----------~~~~~~---~~vA~~lgiP~v~f~~~ 132 (189)
+||+||+- .+...+ ..-|..+|||.+.|+-.
T Consensus 85 ~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 85 KPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp CCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 78999984 333333 33456789999999863
No 55
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=65.81 E-value=22 Score=24.60 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=56.1
Q ss_pred EEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCC
Q 042879 11 IFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTS 90 (189)
Q Consensus 11 l~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~ 90 (189)
+++... ...-.-+++++++|.+.|++ ++.|......++.. ++....+.. .+++... ..
T Consensus 27 vliSv~-d~dK~~l~~~a~~l~~lGf~--i~AT~GTa~~L~~~---------Gi~v~~v~k------~~egg~~----~~ 84 (143)
T 2yvq_A 27 ILIGIQ-QSFRPRFLGVAEQLHNEGFK--LFATEATSDWLNAN---------NVPATPVAW------PSQEGQN----PS 84 (143)
T ss_dssp EEEECC-GGGHHHHHHHHHHHHTTTCE--EEEEHHHHHHHHHT---------TCCCEEECC------GGGC---------
T ss_pred EEEEec-ccchHHHHHHHHHHHHCCCE--EEECchHHHHHHHc---------CCeEEEEEe------ccCCCcc----cc
Confidence 444432 34556789999999999986 44444444445432 244444421 1111000 00
Q ss_pred CCCHHHhhhhcCCCEEEeCCCc--------chHHHHHHHhCCCeEEE
Q 042879 91 QPDMPVNLQEHKPNCLVADMLF--------PWATDAAAKFGIPRLVF 129 (189)
Q Consensus 91 ~~~l~~ll~~~~~d~vI~D~~~--------~~~~~vA~~lgiP~v~f 129 (189)
.+.+.+++++-++|+||.-.-- ......|-++|||++.-
T Consensus 85 ~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 85 LSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred cccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 1457788888789999974322 13456788999998753
No 56
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=64.10 E-value=5.1 Score=32.71 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=55.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHhhhccccccCCCceEE-EEeeCCCCCCCCCCCCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFSKAIPRANELGIEIDI-KTIKFPSVEVGLPEGSE 83 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~~p~~~~ 83 (189)
+.+|+++.- ...-+.=+..|.++|.++ |+++.++.|.... .+....... -+++. ..+. +.....
T Consensus 27 ~~kI~~v~G-tr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~-~m~~~~~~~----~~i~~~~~l~-------v~~~~~ 93 (403)
T 3ot5_A 27 KIKVMSIFG-TRPEAIKMAPLVLALEKEPETFESTVVITAQHR-EMLDQVLEI----FDIKPDIDLD-------IMKKGQ 93 (403)
T ss_dssp CEEEEEEEC-SHHHHHHHHHHHHHHHTCTTTEEEEEEECC------CHHHHHH----TTCCCSEECC-------CCC-CC
T ss_pred cceEEEEEe-cChhHHHHHHHHHHHHhCCCCCcEEEEEecCcH-HHHHHHHHh----cCCCCCcccc-------cCCCCC
Confidence 457877763 345566678888899887 6887766655321 111110000 01110 1111 100000
Q ss_pred ccc-CCC-CCCCHHHhhhhcCCCEEEe--CCCcch-HHHHHHHhCCCeEEEe
Q 042879 84 NLN-EMT-SQPDMPVNLQEHKPNCLVA--DMLFPW-ATDAAAKFGIPRLVFH 130 (189)
Q Consensus 84 ~~~-~~~-~~~~l~~ll~~~~~d~vI~--D~~~~~-~~~vA~~lgiP~v~f~ 130 (189)
... .+. ....+.+++++.+||+|+. |....+ +...|+.+|||.+.+.
T Consensus 94 ~~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ 145 (403)
T 3ot5_A 94 TLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVE 145 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEES
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 000 000 0123446667779998765 333444 3578899999987764
No 57
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=63.39 E-value=22 Score=29.94 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=26.7
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
.+.+++++.++|++|... ....+|+++|||.+-+
T Consensus 392 el~~~i~~~~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 392 VLLKTVDEYQADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHTTCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHhcCCCEEEECC---chhHHHHHcCCCEEEe
Confidence 456777777999999854 4668899999998753
No 58
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=63.05 E-value=13 Score=23.93 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=24.3
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-------CCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-------GIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~~~~ 133 (189)
.+++.+||+||.|..++. +.++.+++ ++|.++++...
T Consensus 41 ~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 41 KLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 334447999999987763 45555543 57877776544
No 59
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=62.56 E-value=6.6 Score=26.51 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=23.8
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHH---HhCCCeEEEe
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAA---KFGIPRLVFH 130 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~---~lgiP~v~f~ 130 (189)
+++++.+||+||.|..++. +.++++ +.++|.+..+
T Consensus 47 ~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 47 DIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 3445558999999999873 345554 4578866543
No 60
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=60.34 E-value=14 Score=27.49 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=33.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
+.||++--..+.|-+- ..+|.++|.++|++|.++.|+.-...+.
T Consensus 4 ~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi~ 47 (209)
T 3zqu_A 4 PERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVMA 47 (209)
T ss_dssp CSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred CCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 3577776666666655 8999999999999999999986544443
No 61
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=59.46 E-value=14 Score=27.59 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=31.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
+.||++.-..+.+-+- ..+|.++|.++| +|.++.|..-.
T Consensus 19 ~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~ 57 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSL 57 (209)
T ss_dssp CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGG
T ss_pred CCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHH
Confidence 4578887777766664 899999999999 99999988644
No 62
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=58.72 E-value=50 Score=26.33 Aligned_cols=87 Identities=8% Similarity=0.072 Sum_probs=49.5
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc-chHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA-NATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~-~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~ 85 (189)
..+|+++-.-.. -+.+++.+.+.|++|.++.... +..... . . + ++..++. .
T Consensus 7 ~~~ilI~g~g~~-----~~~~~~a~~~~G~~~v~v~~~~~~~~~~~-~------a--d-~~~~~~~-------~------ 58 (403)
T 4dim_A 7 NKRLLILGAGRG-----QLGLYKAAKELGIHTIAGTMPNAHKPCLN-L------A--D-EISYMDI-------S------ 58 (403)
T ss_dssp CCEEEEECCCGG-----GHHHHHHHHHHTCEEEEEECSSCCHHHHH-H------C--S-EEEECCT-------T------
T ss_pred CCEEEEECCcHh-----HHHHHHHHHHCCCEEEEEcCCCCCCcchh-h------C--C-eEEEecC-------C------
Confidence 457888764322 3568888888999999997643 322221 1 0 0 1222211 0
Q ss_pred cCCCCCCCHHHhhhhcCCCEEEeC---CCcchHHHHHHHhCCC
Q 042879 86 NEMTSQPDMPVNLQEHKPNCLVAD---MLFPWATDAAAKFGIP 125 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~vI~D---~~~~~~~~vA~~lgiP 125 (189)
..+.+.+++++.++|+|+.- ........+++++|+|
T Consensus 59 ----d~~~l~~~~~~~~~d~v~~~~~~~~~~~~a~~~~~~gl~ 97 (403)
T 4dim_A 59 ----NPDEVEQKVKDLNLDGAATCCLDTGIVSLARICDKENLV 97 (403)
T ss_dssp ----CHHHHHHHTTTSCCSEEECCSCSTTHHHHHHHHHHHTCS
T ss_pred ----CHHHHHHHHHHcCCCEEEeCCcchhHHHHHHHHHHcCcC
Confidence 01234455566689999863 2233345777889985
No 63
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=58.23 E-value=15 Score=26.47 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=30.2
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
.||++.-..+.| ..-..+|.++|.++|++|.++.|+.-..
T Consensus 6 k~IllgvTGs~a-a~k~~~ll~~L~~~g~~V~vv~T~~A~~ 45 (175)
T 3qjg_A 6 ENVLICLCGSVN-SINISHYIIELKSKFDEVNVIASTNGRK 45 (175)
T ss_dssp CEEEEEECSSGG-GGGHHHHHHHHTTTCSEEEEEECTGGGG
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEECcCHHH
Confidence 467666554444 4458999999999999999999886543
No 64
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=57.69 E-value=24 Score=27.99 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=56.1
Q ss_pred ccEEEEecCCCCc--C--hHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCC
Q 042879 7 KLHIIFFPLMAHG--H--MIPLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGS 82 (189)
Q Consensus 7 ~~hvl~~p~p~~G--H--~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~ 82 (189)
++-|++.|..... . .--+.+|+++|.++|++|.++.++............. +. ....+
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~---~~--~~~~l------------- 246 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQM---ET--KPIVA------------- 246 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTC---SS--CCEEC-------------
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhc---cc--ccEEe-------------
Confidence 3467777765432 2 2358899999998899998765554433322221100 00 00111
Q ss_pred CcccCCCCCCCHHHhhhhc-CCCEEEe-CCCcchHHHHHHHhCCCeEEEechhH
Q 042879 83 ENLNEMTSQPDMPVNLQEH-KPNCLVA-DMLFPWATDAAAKFGIPRLVFHGTSF 134 (189)
Q Consensus 83 ~~~~~~~~~~~l~~ll~~~-~~d~vI~-D~~~~~~~~vA~~lgiP~v~f~~~~a 134 (189)
...-.+.+++.-. +-|++|. |. ...-+|..+|+|.+.++..+.
T Consensus 247 ------~g~~sl~e~~ali~~a~~~i~~Ds---G~~HlAaa~g~P~v~lfg~t~ 291 (349)
T 3tov_A 247 ------TGKFQLGPLAAAMNRCNLLITNDS---GPMHVGISQGVPIVALYGPSN 291 (349)
T ss_dssp ------TTCCCHHHHHHHHHTCSEEEEESS---HHHHHHHTTTCCEEEECSSCC
T ss_pred ------eCCCCHHHHHHHHHhCCEEEECCC---CHHHHHHhcCCCEEEEECCCC
Confidence 0011233333322 6788776 43 455678899999999876553
No 65
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=57.19 E-value=11 Score=25.94 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=28.1
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.+++++. |-.=+.|++.+++.|.++|.+|+++ ...+
T Consensus 19 ~~~llIa--GG~GiaPl~sm~~~l~~~~~~v~l~-g~R~ 54 (142)
T 3lyu_A 19 GKILAIG--AYTGIVEVYPIAKAWQEIGNDVTTL-HVTF 54 (142)
T ss_dssp SEEEEEE--ETTHHHHHHHHHHHHHHTTCEEEEE-EEEE
T ss_pred CeEEEEE--CcCcHHHHHHHHHHHHhcCCcEEEE-EeCC
Confidence 4677766 3444889999999999999999998 5433
No 66
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=57.05 E-value=44 Score=27.23 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=22.6
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
.-|.|..|.-.. -...+|+++|||.|+..++.-+
T Consensus 259 GAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~ 298 (374)
T 2yvk_A 259 GADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTF 298 (374)
T ss_dssp CCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGE
T ss_pred CccEEecCCCEEecccHHHHHHHHHHcCCCEEEeccccee
Confidence 455665554221 2357789999999998776654
No 67
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=53.97 E-value=35 Score=27.48 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=22.8
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
.-|.|..|. .. -...+|+++|||.|+..++.-+
T Consensus 232 GAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~ 270 (351)
T 1t5o_A 232 GADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATF 270 (351)
T ss_dssp CCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGB
T ss_pred CccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCcccee
Confidence 455666665 32 2357789999999998876654
No 68
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=53.27 E-value=25 Score=23.05 Aligned_cols=37 Identities=19% Similarity=0.463 Sum_probs=22.7
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-------CCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-------GIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~~~~ 133 (189)
.+++.++|+||.|..++. +.++.+++ ++|.+++....
T Consensus 43 ~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 43 QIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 344457899999887753 44444332 57777766544
No 69
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=53.24 E-value=34 Score=23.15 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=24.2
Q ss_pred CCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 17 AHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 17 ~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
+......-+.||...++.|++|+++-+..-.
T Consensus 28 ~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV 58 (134)
T 3mc3_A 28 DLDRTYAPLFMASISASMEYETSVFFMIXGP 58 (134)
T ss_dssp GTHHHHHHHHHHHHHHHTTCEEEEEECTTGG
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEeCcH
Confidence 3466778888999889999999988776433
No 70
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=53.15 E-value=27 Score=25.58 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=16.9
Q ss_pred hHHHHHHHhCCCeEEEechhHH
Q 042879 114 WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 114 ~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
-...+|+++|||.|+...+.-+
T Consensus 76 ~~Al~Ak~~~vPf~V~a~~~k~ 97 (191)
T 1w2w_B 76 QLAVICKQFGIKFFVVAPKTTI 97 (191)
T ss_dssp HHHHHHHHHTCEEEEECCGGGB
T ss_pred HHHHHHHHcCCCEEEeccccee
Confidence 3457889999999998766543
No 71
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=53.05 E-value=9.7 Score=30.85 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=23.9
Q ss_pred ccEEEEec---CCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFP---LMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p---~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+++|+++. +| .+.-.-...+++.|+++| +|++++..
T Consensus 14 ~MkIl~is~~~~p-~~~~~~~~~l~~~l~~~G-~V~vi~~~ 52 (406)
T 2hy7_A 14 RPCYLVLSSHDFR-TPRRANIHFITDQLALRG-TTRFFSLR 52 (406)
T ss_dssp CSCEEEEESSCTT-SSSCCHHHHHHHHHHHHS-CEEEEECS
T ss_pred CceEEEEecccCC-ChhhhhHhHHHHHHHhCC-ceEEEEec
Confidence 46788876 44 222122345788888999 99999554
No 72
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=52.83 E-value=22 Score=23.38 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|+++ |.|.+- ..+++.|.++|++|+++...
T Consensus 4 ~m~i~Ii---G~G~iG--~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIA---GIGRVG--YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEE---CCSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE---CCCHHH--HHHHHHHHhCCCeEEEEECC
Confidence 3578887 346663 45789999999999998754
No 73
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=52.71 E-value=18 Score=24.75 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=25.2
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
...+|+++- .|.+- ..+++.|..+|++|+++...
T Consensus 18 ~~~~v~IiG---~G~iG--~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 18 KSKYIVIFG---CGRLG--SLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCEEEEEC---CSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CCCcEEEEC---CCHHH--HHHHHHHHhCCCeEEEEECC
Confidence 356888884 45553 45788899999999998764
No 74
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=52.22 E-value=54 Score=26.36 Aligned_cols=34 Identities=15% Similarity=-0.021 Sum_probs=22.2
Q ss_pred CCCEEEeCCCcc------hHHHHHHHhCCCeEEEechhHH
Q 042879 102 KPNCLVADMLFP------WATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 102 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
.-|.|..|.-.. -...+|+++|||.|+..+++-+
T Consensus 234 GAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~ 273 (347)
T 1t9k_A 234 GADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTI 273 (347)
T ss_dssp CCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGE
T ss_pred CccEEecCCCEEecccHHHHHHHHHHcCCCEEEeccccee
Confidence 445555554221 2347789999999998776654
No 75
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=50.67 E-value=14 Score=27.01 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=30.7
Q ss_pred CCHHHhhhhc---CCCEEEeCCCcchHHHHHHHhCCCeEEEechhHH
Q 042879 92 PDMPVNLQEH---KPNCLVADMLFPWATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 92 ~~l~~ll~~~---~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 135 (189)
+.+++.++++ ++++||.|. .+.+.|+++|+|.+...++--+
T Consensus 129 ~e~~~~i~~l~~~G~~vvVG~~---~~~~~A~~~Gl~~vli~sg~eS 172 (196)
T 2q5c_A 129 DEITTLISKVKTENIKIVVSGK---TVTDEAIKQGLYGETINSGEES 172 (196)
T ss_dssp GGHHHHHHHHHHTTCCEEEECH---HHHHHHHHTTCEEEECCCCHHH
T ss_pred HHHHHHHHHHHHCCCeEEECCH---HHHHHHHHcCCcEEEEecCHHH
Confidence 4455555554 899999986 3689999999999988874443
No 76
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=49.43 E-value=22 Score=25.74 Aligned_cols=35 Identities=20% Similarity=0.449 Sum_probs=28.8
Q ss_pred cEEEEecCCCCcC-----hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGH-----MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH-----~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++| |.|= -.+..+|++.|.++|.+|.|..-+
T Consensus 31 ~~ViIVP--GYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHP 70 (186)
T 2bru_C 31 HSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHP 70 (186)
T ss_dssp SEEEEEC--SBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECS
T ss_pred CeEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4788887 5553 268999999999999999998865
No 77
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=49.30 E-value=30 Score=29.93 Aligned_cols=47 Identities=6% Similarity=-0.016 Sum_probs=40.0
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFSK 52 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~ 52 (189)
++.+|++...++..|-....-++..|..+|++|..+...-....+..
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~ 143 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILR 143 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 36799999999999999999999999999999999987765555433
No 78
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=49.03 E-value=12 Score=28.69 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=22.0
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+|++.- +-|-+ =-+|+++|.++||+|+.++-
T Consensus 2 kILVTG--atGfI--G~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 2 RVLVGG--GTGFI--GTALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp EEEEET--TTSHH--HHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEC--CCCHH--HHHHHHHHHHCCCEEEEEEC
Confidence 565544 33444 24689999999999999864
No 79
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=48.41 E-value=11 Score=27.04 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=16.1
Q ss_pred HHHHHHHhhCCCeEEEEe
Q 042879 25 VDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t 42 (189)
+.+|..|+++|++|+++=
T Consensus 15 L~aA~~La~~G~~V~v~E 32 (336)
T 3kkj_A 15 LSAAQALTAAGHQVHLFD 32 (336)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 678899999999999985
No 80
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=48.36 E-value=54 Score=26.76 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCeEEEechhHH
Q 042879 115 ATDAAAKFGIPRLVFHGTSFL 135 (189)
Q Consensus 115 ~~~vA~~lgiP~v~f~~~~a~ 135 (189)
...+|+++|||.|+..+++-+
T Consensus 282 lAl~Ak~~~vPfyV~ap~~k~ 302 (383)
T 2a0u_A 282 LAVSAKFHGVKLYVAAPTTTL 302 (383)
T ss_dssp HHHHHHHTTCCEEEECCGGGB
T ss_pred HHHHHHHcCCCEEEeCCccee
Confidence 357789999999998877654
No 81
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=48.28 E-value=32 Score=21.82 Aligned_cols=39 Identities=15% Similarity=0.462 Sum_probs=24.6
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHH----HhCCCeEEEechhH
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAA----KFGIPRLVFHGTSF 134 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~----~lgiP~v~f~~~~a 134 (189)
+.+++.+||+||.|..++. +.++.+ ..++|.+.+....-
T Consensus 40 ~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 40 EMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDS 84 (120)
T ss_dssp HHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSC
T ss_pred HHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCC
Confidence 3444457999999987763 344443 34688777765443
No 82
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=46.43 E-value=25 Score=25.74 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=29.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
+.||++.-..+.|=+ =..+|.++|.++|++|.++.|+.-.
T Consensus 8 ~k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~ 47 (194)
T 1p3y_1 8 DKKLLIGICGSISSV-GISSYLLYFKSFFKEIRVVMTKTAE 47 (194)
T ss_dssp GCEEEEEECSCGGGG-GTHHHHHHHTTTSSEEEEEECHHHH
T ss_pred CCEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHH
Confidence 457766665444444 5789999999999999999987543
No 83
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=46.19 E-value=26 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=24.5
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHh---------CCCeEEEechh
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKF---------GIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~l---------giP~v~f~~~~ 133 (189)
+.+++.++|+||.|..++. +.++.+++ .+|.+++....
T Consensus 52 ~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 52 DAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 3444558999999987763 45555543 27777776543
No 84
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=45.32 E-value=12 Score=26.21 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=28.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.+++++.- |.| +.|++.+++.|.++|.+|+++ ...+
T Consensus 24 ~~~llIaG-G~G-ItPl~sm~~~l~~~~~~v~l~-g~r~ 59 (158)
T 3lrx_A 24 GKILAIGA-YTG-IVEVYPIAKAWQEIGNDVTTL-HVTF 59 (158)
T ss_dssp SEEEEEEE-TTH-HHHHHHHHHHHHHHTCEEEEE-EECB
T ss_pred CeEEEEEc-cCc-HHHHHHHHHHHHhcCCcEEEE-EeCC
Confidence 46666662 445 899999999999989899999 6544
No 85
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=45.05 E-value=36 Score=30.13 Aligned_cols=42 Identities=5% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCccEEEEecCCCC---cChHHHHH-HHHHHhh-CCCeEEEEeCCcc
Q 042879 5 IRKLHIIFFPLMAH---GHMIPLVD-MAKLFGS-RGVKTTVITTPAN 46 (189)
Q Consensus 5 ~~~~hvl~~p~p~~---GH~~P~l~-La~~La~-~G~~Vt~~t~~~~ 46 (189)
....||+..|..+. ||..|++. |.+.+.. -||+|+|+.++..
T Consensus 380 ~~~l~~~~~ps~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~ 426 (690)
T 3p0j_A 380 AKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWS 426 (690)
T ss_dssp SSCEEEEECCCCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTH
T ss_pred CCcceEEecCCCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecch
Confidence 34568999997776 89999998 6665544 3999999988753
No 86
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=44.61 E-value=32 Score=25.30 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=30.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~~~~~~ 51 (189)
+|++--..+.|- .-..+|.++|.++ |++|.++.|..-...+.
T Consensus 2 ~IllgvTGsiaa-~k~~~ll~~L~~~~g~~V~vv~T~~A~~fi~ 44 (197)
T 1sbz_A 2 KLIVGMTGATGA-PLGVALLQALREMPNVETHLVMSKWAKTTIE 44 (197)
T ss_dssp EEEEEECSSSCH-HHHHHHHHHHHTCTTCEEEEEECHHHHHHHH
T ss_pred EEEEEEeChHHH-HHHHHHHHHHHhccCCEEEEEECchHHHHhH
Confidence 455555545455 4589999999998 99999999886544443
No 87
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=44.01 E-value=39 Score=23.24 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=26.2
Q ss_pred CCCcChHHHHHHHHHHhhCCCeEEEEeCCcchH
Q 042879 16 MAHGHMIPLVDMAKLFGSRGVKTTVITTPANAT 48 (189)
Q Consensus 16 p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~ 48 (189)
...-...+-+.+|...++.|++|+++-+..-..
T Consensus 17 g~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~gv~ 49 (144)
T 2qs7_A 17 GTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQ 49 (144)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEehHHHH
Confidence 335677888889999889999999998865443
No 88
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=43.86 E-value=30 Score=25.52 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=30.2
Q ss_pred ccEEEEecCCCCcChH-HHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMI-PLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~-P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
+.||++--.. .+... =..+|.++|.++|++|.++.|..-.
T Consensus 7 ~k~I~lgiTG-s~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~ 47 (201)
T 3lqk_A 7 GKHVGFGLTG-SHCTYHEVLPQMERLVELGAKVTPFVTHTVQ 47 (201)
T ss_dssp TCEEEEECCS-CGGGGGGTHHHHHHHHHTTCEEEEECSSCSC
T ss_pred CCEEEEEEEC-hHHHHHHHHHHHHHHhhCCCEEEEEEChhHH
Confidence 3467665554 45555 7899999999999999999887543
No 89
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=43.71 E-value=24 Score=29.49 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.2
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
+++++++.++|++|... +...+|+++|||.+.+
T Consensus 367 le~~i~~~~pDllig~~---~~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 367 LEHAARAGQAQLVIGNS---HALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHTCSEEEECT---THHHHHHHTTCCEEEC
T ss_pred HHHHHHhcCCCEEEECh---hHHHHHHHcCCCEEEe
Confidence 44566666999999875 4678999999999854
No 90
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=43.20 E-value=40 Score=28.60 Aligned_cols=34 Identities=6% Similarity=0.226 Sum_probs=26.5
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHh-------CCCeEEE
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKF-------GIPRLVF 129 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~l-------giP~v~f 129 (189)
.+++++++.++|++|.+. +...+|+++ |||++.+
T Consensus 425 ~l~~~i~~~~pDLiig~~---~~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 425 HFRSLMFTRQPDFMIGNS---YGKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HHHHHHHHHCCSEEEECG---GGHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHhhcCCCEEEECc---chHHHHHHhhcccccCCCCeEEe
Confidence 355677777999999886 357788888 9999854
No 91
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=43.17 E-value=36 Score=24.78 Aligned_cols=42 Identities=7% Similarity=0.123 Sum_probs=32.4
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~ 51 (189)
||++.-..+.|-+ =..+|.++|.++|++|.++.|+.-...+.
T Consensus 3 ~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~~i~ 44 (189)
T 2ejb_A 3 KIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRNAKVVLK 44 (189)
T ss_dssp EEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred EEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHhh
Confidence 6777776666754 67899999999999999999886544443
No 92
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=42.90 E-value=14 Score=31.19 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=26.1
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.|+|||++-. |.|- +.+|++|..+|++||++...
T Consensus 41 ~KprVVIIGg-G~AG----l~~A~~L~~~~~~VtLId~~ 74 (502)
T 4g6h_A 41 DKPNVLILGS-GWGA----ISFLKHIDTKKYNVSIISPR 74 (502)
T ss_dssp SSCEEEEECS-SHHH----HHHHHHSCTTTCEEEEEESS
T ss_pred CCCCEEEECC-cHHH----HHHHHHhhhCCCcEEEECCC
Confidence 4679999875 3332 57889999899999999754
No 93
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=41.92 E-value=29 Score=25.80 Aligned_cols=39 Identities=8% Similarity=-0.068 Sum_probs=27.4
Q ss_pred cEEEEecCCCCcChHH-HHHHHHHHhhCCCeEEEEeCCcch
Q 042879 8 LHIIFFPLMAHGHMIP-LVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P-~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
.||++.-..+ +...- ..+|.++|.++|++|.++.|..-.
T Consensus 6 k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 6 KRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp CEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 4666554433 55554 789999999999999999987644
No 94
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=40.50 E-value=24 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCCc
Q 042879 24 LVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~~ 45 (189)
-..+|++++.+|++|+++..+.
T Consensus 32 G~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 32 GKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCc
Confidence 3568999999999999998653
No 95
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=40.40 E-value=28 Score=25.18 Aligned_cols=38 Identities=5% Similarity=0.131 Sum_probs=28.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
||++.-..+. ...=..+|.++|.++|++|.++.|..-.
T Consensus 4 ~IllgvTGs~-aa~k~~~l~~~L~~~g~~V~vv~T~~A~ 41 (181)
T 1g63_A 4 KLLICATASI-NVININHYIVELKQHFDEVNILFSPSSK 41 (181)
T ss_dssp CEEEEECSCG-GGGGHHHHHHHHTTTSSCEEEEECGGGG
T ss_pred EEEEEEECHH-HHHHHHHHHHHHHHCCCEEEEEEchhHH
Confidence 5555554444 4447889999999999999999988644
No 96
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=40.09 E-value=22 Score=26.45 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=24.7
Q ss_pred CCCEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 102 KPNCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 102 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
.+.+||+|---..+...|+++|||++.+.+..
T Consensus 31 eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~ 62 (211)
T 3p9x_A 31 EVALLITDKPGAKVVERVKVHEIPVCALDPKT 62 (211)
T ss_dssp EEEEEEESCSSSHHHHHHHTTTCCEEECCGGG
T ss_pred EEEEEEECCCCcHHHHHHHHcCCCEEEeChhh
Confidence 35789998544457789999999999887643
No 97
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=39.87 E-value=50 Score=21.42 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=17.3
Q ss_pred hhcCCCEEEeCCCcch--HHHHHHHh-------CCCeEEEec
Q 042879 99 QEHKPNCLVADMLFPW--ATDAAAKF-------GIPRLVFHG 131 (189)
Q Consensus 99 ~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~~ 131 (189)
++.++|+||.|..++. +.++.+++ ++|.+++..
T Consensus 44 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 44 NATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEES
T ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEEC
Confidence 3346777777766542 33333322 456665554
No 98
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=39.39 E-value=45 Score=21.44 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=20.0
Q ss_pred hhhcCCCEEEeCCCcc---hHHHHHHH----hCCCeEEEechh
Q 042879 98 LQEHKPNCLVADMLFP---WATDAAAK----FGIPRLVFHGTS 133 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~---~~~~vA~~----lgiP~v~f~~~~ 133 (189)
+++.++|+||.|..+. .+.++.++ .++|.+++....
T Consensus 50 ~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 50 APDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCC
T ss_pred HHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 3334678888886553 23333333 367777665543
No 99
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=38.13 E-value=32 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=24.0
Q ss_pred HhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 96 VNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
+.|.+++||+||.........+--++.|||++.+...
T Consensus 110 E~i~al~PDLIi~~~~~~~~~~~L~~~gipvv~~~~~ 146 (335)
T 4hn9_A 110 EACVAATPDVVFLPMKLKKTADTLESLGIKAVVVNPE 146 (335)
T ss_dssp HHHHHTCCSEEEEEGGGHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHhcCCCEEEEeCcchhHHHHHHHcCCCEEEEcCC
Confidence 3344558999998654222233346789999998654
No 100
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=37.96 E-value=25 Score=26.80 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
|.+..++.+|++.- +-|.+ -.+|+++|+++|++|+.+.-.
T Consensus 1 M~~~~~~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 1 MQRNTLKHRILITG--GAGFI--GGHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp ------CCEEEEET--TTSHH--HHHHHHHHHHTTCCEEEECCC
T ss_pred CCcccCCCeEEEEC--CCChH--HHHHHHHHHHCCCEEEEEecC
Confidence 44433345777765 34444 347899999999999998653
No 101
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=37.59 E-value=52 Score=21.88 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=14.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEE
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVI 41 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~ 41 (189)
+.+|+++- .+-.-...|.+.|.+.|++|..+
T Consensus 7 ~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~ 37 (154)
T 3gt7_A 7 AGEILIVE----DSPTQAEHLKHILEETGYQTEHV 37 (154)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEe----CCHHHHHHHHHHHHHCCCEEEEe
Confidence 44555543 23333344445555556655443
No 102
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=37.33 E-value=58 Score=20.58 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=19.3
Q ss_pred hhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 99 QEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 99 ~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
++.++|+||.|..++. +.++.+++ ++|.+++....
T Consensus 44 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 44 PDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp GGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred hcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3346788888876542 33443332 46666665543
No 103
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=36.93 E-value=60 Score=27.00 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=35.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
...|+++-.+|.|--+-...||..|+.+|.+|.++..+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 34677777888999999999999999999999999877553
No 104
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=36.88 E-value=36 Score=26.84 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=25.4
Q ss_pred CCHHHhhhhcCCCEEEeCCCcch-HHHHHHHhCCCeEEEec
Q 042879 92 PDMPVNLQEHKPNCLVADMLFPW-ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~~-~~~vA~~lgiP~v~f~~ 131 (189)
.++++++ +++||+||....... .....+++|||++.+..
T Consensus 87 ~n~E~Il-al~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 87 PDLESLI-TLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp CCHHHHH-HHCCSEEEEESCCHHHHHHHHHHHTSCEEEECC
T ss_pred CCHHHHh-cCCCCEEEEeCCccchHHHHHHhcCCcEEEEec
Confidence 3454544 458999998654321 23456789999998853
No 105
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=36.62 E-value=41 Score=26.57 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=26.2
Q ss_pred EEEEec--CCC-CcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFP--LMA-HGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p--~p~-~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+|+++. +|. .|--.-+..|++.|+++ |+|++++...
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~ 40 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHA 40 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESC
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecC
Confidence 565553 232 35666788999999999 9999988543
No 106
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=36.39 E-value=37 Score=26.36 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=58.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhC-C-CeEEEEeCCcchHHHhhhccccccCCCceEE-EEeeCCCCCCCCCCCCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSR-G-VKTTVITTPANATLFSKAIPRANELGIEIDI-KTIKFPSVEVGLPEGSE 83 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~-G-~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~~p~~~~ 83 (189)
+.+|+++.. ..++......++++|.++ | ++|.++++............. .++.. ..++.. .+ ...
T Consensus 8 ~mkIl~v~~-~~~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~-~~~ 75 (375)
T 3beo_A 8 RLKVMTIFG-TRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSI-----FGITPDFDLNIM-----KD-RQT 75 (375)
T ss_dssp CEEEEEEEC-SHHHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHH-----HTCCCSEECCCC-----CT-TCC
T ss_pred CceEEEEec-CcHHHHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHH-----cCCCCccccccC-----CC-ccc
Confidence 468888862 356777888999999887 5 888777765432211111000 01111 112110 00 000
Q ss_pred cccCC-CCCCCHHHhhhhcCCCEEEeCCCcc--h-HHHHHHHhCCCeEEEec
Q 042879 84 NLNEM-TSQPDMPVNLQEHKPNCLVADMLFP--W-ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 84 ~~~~~-~~~~~l~~ll~~~~~d~vI~D~~~~--~-~~~vA~~lgiP~v~f~~ 131 (189)
..... .....+++++++.+||+|++..... . +..+|+..|+|.+....
T Consensus 76 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~ 127 (375)
T 3beo_A 76 LIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEA 127 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEec
Confidence 00000 0011244666666999998843221 1 23567889999986543
No 107
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=35.97 E-value=40 Score=25.24 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHhhhhc---CCCEEEeCCCcchHHHHHHHhCCCeEEEec
Q 042879 94 MPVNLQEH---KPNCLVADMLFPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 94 l~~ll~~~---~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 131 (189)
+++.++++ ++++||.|. .+.+.|+++|+|.+...+
T Consensus 143 ~~~~i~~l~~~G~~vVVG~~---~~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 143 ARGQINELKANGTEAVVGAG---LITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHHHHHHHTTCCEEEESH---HHHHHHHHTTSEEEESSC
T ss_pred HHHHHHHHHHCCCCEEECCH---HHHHHHHHcCCcEEEECC
Confidence 33444443 899999986 368999999999998885
No 108
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=35.83 E-value=39 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=28.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhh-CCCeEEEEeCCcch
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGS-RGVKTTVITTPANA 47 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~-~G~~Vt~~t~~~~~ 47 (189)
+.||++.-..+.+ ..-..+|.++|.+ +|++|.++.|+.-.
T Consensus 19 ~k~IllgvTGsia-a~k~~~lv~~L~~~~g~~V~vv~T~~A~ 59 (206)
T 1qzu_A 19 KFHVLVGVTGSVA-ALKLPLLVSKLLDIPGLEVAVVTTERAK 59 (206)
T ss_dssp SEEEEEEECSSGG-GGTHHHHHHHHC---CEEEEEEECTGGG
T ss_pred CCEEEEEEeChHH-HHHHHHHHHHHhcccCCEEEEEECHhHH
Confidence 4577766655544 5556999999998 89999999998644
No 109
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=35.66 E-value=65 Score=19.98 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=23.5
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
.+++.++|+||.|..++. +.++.+++ ++|.+.+....
T Consensus 42 ~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 42 KYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 334447999999987753 44444433 57877776544
No 110
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=35.47 E-value=32 Score=25.68 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=29.9
Q ss_pred EEEEe-cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 9 HIIFF-PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 9 hvl~~-p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.|.+. .-.|.|--.-...||..|+++|.+|.++-....
T Consensus 8 vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 8 RIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34444 335668999999999999999999999977653
No 111
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=35.31 E-value=55 Score=21.64 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=15.4
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEE
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTV 40 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~ 40 (189)
.++.+|+++- .+-.-...|.+.|...|++|..
T Consensus 5 ~~~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~ 36 (154)
T 2rjn_A 5 YKNYTVMLVD----DEQPILNSLKRLIKRLGCNIIT 36 (154)
T ss_dssp CSCCEEEEEC----SCHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCCeEEEEc----CCHHHHHHHHHHHHHcCCeEEE
Confidence 3344565543 2333334445555555666553
No 112
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=35.23 E-value=65 Score=19.90 Aligned_cols=36 Identities=17% Similarity=0.493 Sum_probs=22.5
Q ss_pred hhhcCCCEEEeCCCcch--HHHHHH----HhCCCeEEEechh
Q 042879 98 LQEHKPNCLVADMLFPW--ATDAAA----KFGIPRLVFHGTS 133 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~--~~~vA~----~lgiP~v~f~~~~ 133 (189)
+++.++|+||.|..++. +.++.+ .-++|.+++....
T Consensus 41 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 41 FEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred HHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 33447899999987652 344443 3468877776554
No 113
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=35.14 E-value=84 Score=24.14 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=20.1
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCC--CeEEEEe
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRG--VKTTVIT 42 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G--~~Vt~~t 42 (189)
..+|++.- +-|.+ -..|+++|+++| ++|+.+.
T Consensus 24 ~~~vlVtG--atG~i--G~~l~~~L~~~g~~~~v~~~~ 57 (346)
T 4egb_A 24 AMNILVTG--GAGFI--GSNFVHYMLQSYETYKIINFD 57 (346)
T ss_dssp CEEEEEET--TTSHH--HHHHHHHHHHHCTTEEEEEEE
T ss_pred CCeEEEEC--CccHH--HHHHHHHHHhhCCCcEEEEEe
Confidence 34666655 34544 347889999999 5555544
No 114
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=35.10 E-value=53 Score=24.09 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=34.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+..|+++.-.|.|-..-.+.+|.+.+.+|.+|-|+..-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 45899999999999999999999999999999999543
No 115
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=34.95 E-value=16 Score=27.91 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=24.5
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+..+|+++-.-..| +..|+.|+++|++|+++--.
T Consensus 6 ~~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~~ 39 (332)
T 3lzw_A 6 KVYDITIIGGGPVG-----LFTAFYGGMRQASVKIIESL 39 (332)
T ss_dssp EEEEEEEECCSHHH-----HHHHHHHHHTTCCEEEECSS
T ss_pred ccceEEEECCCHHH-----HHHHHHHHHCCCCEEEEEcC
Confidence 34578887643223 57788888899999999753
No 116
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=34.30 E-value=52 Score=25.13 Aligned_cols=34 Identities=29% Similarity=0.200 Sum_probs=23.9
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.+|+++-. -|.+ -..++++|+++|++|+.++-..
T Consensus 12 ~~ilVtGa--tG~i--G~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 12 SKILIFGG--TGYI--GNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CCEEEETT--TSTT--HHHHHHHHHHTTCCEEEEECTT
T ss_pred CeEEEECC--CchH--HHHHHHHHHHCCCcEEEEECCC
Confidence 36777653 3443 3568899999999999887543
No 117
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=34.16 E-value=82 Score=19.34 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=22.5
Q ss_pred hhhhcCCCEEEeCCCcc--hHHHHHHHh-----CCCeEEEech
Q 042879 97 NLQEHKPNCLVADMLFP--WATDAAAKF-----GIPRLVFHGT 132 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~--~~~~vA~~l-----giP~v~f~~~ 132 (189)
.+++.++|+||.|..++ .+.++.+++ ++|.+.+...
T Consensus 40 ~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 40 KFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 34445799999998765 244444332 4777766554
No 118
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=33.58 E-value=40 Score=24.51 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=30.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+|.+..-.|.|--.-...||..|+++|.+|.++-...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4666666677889999999999999999999987654
No 119
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=33.55 E-value=20 Score=24.17 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=26.2
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCCcchHHHhhh
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTPANATLFSKA 53 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~ 53 (189)
||+|=+-.|-+.|.++|.+..+++.+.|...+...
T Consensus 1 ~~m~Rl~~l~~~m~~~glDa~li~~~~ni~YlTGf 35 (140)
T 3i7m_A 1 GHMTKLEQIQQWTAQHHASMTYLSNPKTIEYLTGF 35 (140)
T ss_dssp ---CHHHHHHHHHHHTTCSEEEECCHHHHHHHHCC
T ss_pred CcchHHHHHHHHHHHcCCCEEEECCCCcceeecCC
Confidence 78887777888899999999999988777666554
No 120
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=33.41 E-value=28 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=24.6
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
|....++.+|.++-.-..| ..+|+.|+++||+|+++...
T Consensus 1 M~~~~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 1 MSLTGTDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp ------CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCCCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEECC
Confidence 4433345688888544334 35788999999999998654
No 121
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=33.36 E-value=87 Score=19.79 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=21.5
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHH---H----hCCCeEEEech
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAA---K----FGIPRLVFHGT 132 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~---~----lgiP~v~f~~~ 132 (189)
+.+++.++|+||.|..+.. +.++.+ + -++|.+++...
T Consensus 41 ~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 41 QQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 3444457899999986652 333332 2 15777766653
No 122
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=32.75 E-value=48 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=25.1
Q ss_pred CCHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEEe
Q 042879 92 PDMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVFH 130 (189)
Q Consensus 92 ~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~ 130 (189)
.+++++ .+++||+||...... ...+--++.|||++.+.
T Consensus 50 ~n~E~i-~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 50 LNAEGI-LAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp CCHHHH-HTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred CCHHHH-HccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 344444 456899999877653 23333467899999884
No 123
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.70 E-value=59 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=4.8
Q ss_pred CCCEEEeCCC
Q 042879 102 KPNCLVADML 111 (189)
Q Consensus 102 ~~d~vI~D~~ 111 (189)
++|+||.|.-
T Consensus 47 ~~dlvi~d~~ 56 (140)
T 2qr3_A 47 NPEVVLLDMN 56 (140)
T ss_dssp CEEEEEEETT
T ss_pred CCCEEEEeCC
Confidence 4455555543
No 124
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=32.65 E-value=51 Score=25.78 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=27.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..||.|+-.-+.| |-.+|+.|.++|++|+..-...
T Consensus 4 ~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcCCC
Confidence 3578888776666 5569999999999999987643
No 125
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=32.13 E-value=62 Score=20.75 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=22.7
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
.+++.++|+||.|..++. +.++.+++ ++|.+++....
T Consensus 44 ~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 44 LIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCC
Confidence 344447999999987752 44444432 47777666543
No 126
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.90 E-value=81 Score=19.86 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=21.0
Q ss_pred Hhhhhc-CCCEEEeCCCcch---HHHHHHHh-----CCCeEEEechh
Q 042879 96 VNLQEH-KPNCLVADMLFPW---ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~-~~d~vI~D~~~~~---~~~vA~~l-----giP~v~f~~~~ 133 (189)
+.+++. ++|+||.|..+.. +.++.+++ ++|.+++....
T Consensus 43 ~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 43 EMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 334444 6888888876542 33443332 47777665443
No 127
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=31.81 E-value=59 Score=21.07 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=21.9
Q ss_pred hhhhcCCCEEEeCCCcc--hHHHHHHHh----CCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFP--WATDAAAKF----GIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~--~~~~vA~~l----giP~v~f~~~~ 133 (189)
.+++.++|+||.|..++ .+.++.+++ .+|.+++....
T Consensus 43 ~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 43 KIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 33444788888887664 244444433 57777665543
No 128
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.81 E-value=72 Score=20.49 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=21.5
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHH-------hCCCeEEEechh
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAK-------FGIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~-------lgiP~v~f~~~~ 133 (189)
+.+++.++|+||.|..+.. +.++.++ -++|.+++....
T Consensus 44 ~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 44 EQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 3444457888888876652 3444432 246666555443
No 129
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=31.67 E-value=44 Score=28.14 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=26.6
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEE
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLV 128 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 128 (189)
.+.+++++.++|++|... ....+|+++|||.+-
T Consensus 408 el~~~i~~~~pDL~ig~~---~~~~ia~k~gIP~~~ 440 (492)
T 3u7q_A 408 EFEEFVKRIKPDLIGSGI---KEKFIFQKMGIPFRE 440 (492)
T ss_dssp HHHHHHHHHCCSEEEECH---HHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCcEEEeCc---chhHHHHHcCCCEEe
Confidence 355677777999999863 467899999999986
No 130
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.66 E-value=62 Score=20.18 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=21.2
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-------CCCeEEEech
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-------GIPRLVFHGT 132 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~~~ 132 (189)
.+++.++|+||.|..++. +.++.+++ ++|.+.+...
T Consensus 40 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 40 IARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 334447999999987752 44444432 5677766543
No 131
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=31.34 E-value=1.1e+02 Score=24.07 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=52.0
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHH-HhhhccccccCCCceE--EEEeeCCCCCCCCCCCCCcc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATL-FSKAIPRANELGIEID--IKTIKFPSVEVGLPEGSENL 85 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~-~~~~~~~~~~~~~~i~--~~~lp~~~~~~~~p~~~~~~ 85 (189)
.|.+- ..+.|=..-+..|+++|.++| +|.+.++...... ..... .++. .. +|. +.
T Consensus 42 ~iwih-~~s~G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~~~~~~~~-------~~v~~~~~-~p~-----~~------- 99 (374)
T 2xci_A 42 ALWVH-TASIGEFNTFLPILKELKREH-RILLTYFSPRAREYLKTKS-------DFYDCLHP-LPL-----DN------- 99 (374)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHHHS-CEEEEESCGGGHHHHHTTG-------GGCSEEEE-CCC-----SS-------
T ss_pred CEEEE-cCCHHHHHHHHHHHHHHHhcC-CEEEEEcCCcHHHHHHHhc-------ccccceeE-CCC-----CC-------
Confidence 44444 456688899999999999988 8876655432222 22110 1232 22 331 00
Q ss_pred cCCCCCCCHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 86 NEMTSQPDMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 86 ~~~~~~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
...+++++++.+||+|+.-....|...++.-.+ |.+..
T Consensus 100 -----~~~l~~~l~~~~pDiv~~~~~~~~~~~~~~~~~-p~~~~ 137 (374)
T 2xci_A 100 -----PFSVKRFEELSKPKALIVVEREFWPSLIIFTKV-PKILV 137 (374)
T ss_dssp -----HHHHHHHHHHHCCSEEEEESCCCCHHHHHHCCS-CEEEE
T ss_pred -----HHHHHHHHHHhCCCEEEEECccCcHHHHHHHhC-CEEEE
Confidence 123567888889999886333335443333223 76554
No 132
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=31.22 E-value=77 Score=19.72 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=22.1
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHH----hCCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAK----FGIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~----lgiP~v~f~~~~ 133 (189)
.+++.++|+||.|..++. +.++.++ -++|.+.+....
T Consensus 42 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 42 ILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 344457899999987652 3444433 357766665543
No 133
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=31.17 E-value=1e+02 Score=22.19 Aligned_cols=38 Identities=11% Similarity=-0.071 Sum_probs=31.4
Q ss_pred ccEEEEecCC-CCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLM-AHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p-~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+..+.++..+ +.|--.-++++++++..+|.+|-++...
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3456666666 8899999999999999999999998744
No 134
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}
Probab=31.10 E-value=75 Score=23.19 Aligned_cols=38 Identities=5% Similarity=-0.018 Sum_probs=27.8
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.++.|++++-.+ |+..-...+++.|+++|++|..+...
T Consensus 45 ~~p~vv~~hG~~-~~~~~~~~~~~~l~~~g~~v~~~d~~ 82 (315)
T 4f0j_A 45 NGRTILLMHGKN-FCAGTWERTIDVLADAGYRVIAVDQV 82 (315)
T ss_dssp CSCEEEEECCTT-CCGGGGHHHHHHHHHTTCEEEEECCT
T ss_pred CCCeEEEEcCCC-CcchHHHHHHHHHHHCCCeEEEeecC
Confidence 345677777544 44456888999999999998887654
No 135
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=30.99 E-value=48 Score=24.61 Aligned_cols=39 Identities=5% Similarity=0.054 Sum_probs=24.5
Q ss_pred CHHHhhhhcCCCEEEeCCCcc-hHHHHHHHhCCCeEEEech
Q 042879 93 DMPVNLQEHKPNCLVADMLFP-WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~f~~~ 132 (189)
+++++ .+++||+||...... ...+--++.|||++.+-..
T Consensus 52 n~E~i-~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~ 91 (260)
T 2q8p_A 52 NVEAV-KKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFD 91 (260)
T ss_dssp CHHHH-HHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECCS
T ss_pred CHHHH-HhcCCCEEEecCccCHHHHHHHHHcCCcEEEecCC
Confidence 44444 456899999764322 2234456789999887543
No 136
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.98 E-value=66 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=18.0
Q ss_pred hhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEech
Q 042879 98 LQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGT 132 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~ 132 (189)
+++.++|+||.|. +.. +.++.+++ ++|.+++...
T Consensus 44 l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 44 LRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECC
Confidence 3334678888777 542 22333322 4666666543
No 137
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=30.81 E-value=54 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=21.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
.+|++.- +-|-+ -.+|+++|+++|++|+.+.
T Consensus 10 ~~vlVTG--atGfI--G~~l~~~Ll~~G~~V~~~~ 40 (338)
T 2rh8_A 10 KTACVVG--GTGFV--ASLLVKLLLQKGYAVNTTV 40 (338)
T ss_dssp CEEEEEC--TTSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEC--CchHH--HHHHHHHHHHCCCEEEEEE
Confidence 4666654 34433 2468899999999998754
No 138
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=30.81 E-value=63 Score=24.98 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=30.8
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEechhHHH
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFHGTSFLS 136 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~~ 136 (189)
+.+++.++.||+++..... +..+|++.|++.+.+-+.+...
T Consensus 231 ~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~l~~~Y 273 (291)
T 1pq4_A 231 DTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLDPLAADW 273 (291)
T ss_dssp HHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEECTTCSSH
T ss_pred HHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEcCchhhH
Confidence 4445558999999987664 5688999999998887765533
No 139
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=30.73 E-value=35 Score=24.25 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=22.1
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+|++.- +-|.+ =..++++|+++|++|+.+.-.
T Consensus 2 kvlVtG--atG~i--G~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 2 KIGIIG--ATGRA--GSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp EEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred eEEEEc--CCchh--HHHHHHHHHhCCCEEEEEEcC
Confidence 455543 33433 357899999999999988754
No 140
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=30.53 E-value=39 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=22.9
Q ss_pred CCCEEEeCCCcchHHHHHHHhCCCeEEEec
Q 042879 102 KPNCLVADMLFPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 102 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 131 (189)
.+.+||+|-=-..+...|+++|||++.+-.
T Consensus 36 ~I~~Visn~~~a~~l~~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 36 EIVAVFSDKAEAGGLAKAEAAGIATQVFKR 65 (209)
T ss_dssp EEEEEEESCTTCTHHHHHHHTTCCEEECCG
T ss_pred EEEEEEECCcccHHHHHHHHcCCCEEEeCc
Confidence 356899975333467899999999998764
No 141
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=30.52 E-value=61 Score=23.37 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=29.2
Q ss_pred ccEEEEecCCCCcC-----hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGH-----MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH-----~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|+++| |.|= -.+..+|++.|.++|.+|.|..-+
T Consensus 23 A~~ViIvP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 63 (180)
T 1pno_A 23 ASKVIIVP--GYGMAVAQAQHALREMADVLKKEGVEVSYAIHP 63 (180)
T ss_dssp CSEEEEEE--CHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCeEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 34788887 5553 368999999999999999998866
No 142
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=30.50 E-value=36 Score=27.01 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCeEEEEeCCc
Q 042879 25 VDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+|+.++.+|++||++..+.
T Consensus 69 ~aiAe~~~~~Ga~V~lv~g~~ 89 (313)
T 1p9o_A 69 ATSAEAFLAAGYGVLFLYRAR 89 (313)
T ss_dssp HHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHCCCEEEEEecCC
Confidence 468899999999999998754
No 143
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=30.48 E-value=35 Score=24.81 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=23.3
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|++.- +-|-+ -.+++++|+++|++|+++.-.
T Consensus 22 ~~ilVtG--atG~i--G~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 22 MRVLVVG--ANGKV--ARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CeEEEEC--CCChH--HHHHHHHHHhCCCeEEEEECC
Confidence 4666654 33433 357899999999999998754
No 144
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=30.34 E-value=42 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 21 MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 21 ~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+-+|.+|.+.|.++|++|.+++..
T Consensus 145 ~~~~~~l~~~l~~~G~~v~ivSas 168 (327)
T 4as2_A 145 FSGQRELYNKLMENGIEVYVISAA 168 (327)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 458999999999999999999865
No 145
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=30.13 E-value=79 Score=24.12 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=31.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..|.+..-.|.|=-.-...||..|+++|.+|.++-...
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35566666777999999999999999999999987653
No 146
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=29.97 E-value=1.6e+02 Score=21.45 Aligned_cols=36 Identities=8% Similarity=0.181 Sum_probs=18.6
Q ss_pred EecCCCCcChHHHHH-HHHHHhhCCCeEEEEeCCcch
Q 042879 12 FFPLMAHGHMIPLVD-MAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 12 ~~p~p~~GH~~P~l~-La~~La~~G~~Vt~~t~~~~~ 47 (189)
++|......+..+++ +.+.+.++|+++.+..+....
T Consensus 14 i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~ 50 (277)
T 3e61_A 14 LLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDI 50 (277)
T ss_dssp EESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 334333333444444 334445578888877665443
No 147
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.94 E-value=95 Score=19.57 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=10.9
Q ss_pred hhhhcCCCEEEeCCCcc
Q 042879 97 NLQEHKPNCLVADMLFP 113 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~ 113 (189)
.+++.++|+||.|..+.
T Consensus 45 ~l~~~~~dlii~d~~l~ 61 (132)
T 3lte_A 45 KLSTFEPAIMTLDLSMP 61 (132)
T ss_dssp HHHHTCCSEEEEESCBT
T ss_pred HHHhcCCCEEEEecCCC
Confidence 33444678888887654
No 148
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.77 E-value=1.1e+02 Score=19.62 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=6.6
Q ss_pred CCCEEEeCCCcc
Q 042879 102 KPNCLVADMLFP 113 (189)
Q Consensus 102 ~~d~vI~D~~~~ 113 (189)
++|+||.|..+.
T Consensus 51 ~~dlii~D~~l~ 62 (144)
T 3kht_A 51 KYDLIILDIGLP 62 (144)
T ss_dssp CCSEEEECTTCG
T ss_pred CCCEEEEeCCCC
Confidence 456666665443
No 149
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=29.60 E-value=77 Score=25.05 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=34.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
...|+++-.|+.|--.=+..|+..|+.+|.+|.++...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 45889999999999999999999999999999998765
No 150
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=29.51 E-value=64 Score=23.32 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=28.7
Q ss_pred cEEEEecCCCCcC-----hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGH-----MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH-----~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++| |.|= -.+..+|++.|.++|.+|.|..-+
T Consensus 23 ~~ViIvP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHP 62 (184)
T 1d4o_A 23 NSIIITP--GYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHP 62 (184)
T ss_dssp SEEEEEE--CHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CeEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4788887 4543 368999999999999999998866
No 151
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=29.47 E-value=45 Score=25.01 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-..+|++|+.+|++|+++...
T Consensus 37 G~aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 37 GFAIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 357899999999999998643
No 152
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=29.46 E-value=78 Score=20.19 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=20.5
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHH-----hCCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAK-----FGIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~-----lgiP~v~f~~~~ 133 (189)
.+++.++|+||.|..++. +.++.++ -++|.+++....
T Consensus 42 ~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 42 KIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred HHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccc
Confidence 334447888888876642 3333332 246666665443
No 153
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=29.29 E-value=64 Score=20.23 Aligned_cols=36 Identities=14% Similarity=0.376 Sum_probs=21.8
Q ss_pred hhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 98 LQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
+++.++|+||.|..++. +.++.+++ ++|.+.+....
T Consensus 43 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 43 VTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 33447899999987652 34444332 57777665543
No 154
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=29.27 E-value=1e+02 Score=20.14 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=21.5
Q ss_pred HhhhhcCCCEEEeCCCcc--hHHHHHHH-----hCCCeEEEechh
Q 042879 96 VNLQEHKPNCLVADMLFP--WATDAAAK-----FGIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~--~~~~vA~~-----lgiP~v~f~~~~ 133 (189)
+.+++.++|+||.|..+. .+.++.++ -++|++++....
T Consensus 45 ~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 45 RLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 334444788888887654 23333332 257777766543
No 155
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=29.00 E-value=53 Score=24.25 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=28.9
Q ss_pred CHHHhhhhc-------CCCEEEeCCCcchHHHHHHHhCCCeEEEech
Q 042879 93 DMPVNLQEH-------KPNCLVADMLFPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 93 ~l~~ll~~~-------~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 132 (189)
.++++++.. .+.+||++-=-..+...|+++|||++.+.+.
T Consensus 13 ~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~ 59 (209)
T 1meo_A 13 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59 (209)
T ss_dssp THHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGG
T ss_pred HHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECcc
Confidence 455666541 4567888875556778899999999987653
No 156
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=28.97 E-value=52 Score=27.28 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
+++++++.++|++|.+. +...+|+++|||.+.+
T Consensus 377 l~~~i~~~~pDl~ig~~---~~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 377 VHQWIKNEGVDLLISNT---YGKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHSCCSEEEESG---GGHHHHHHHTCCEEEC
T ss_pred HHHHHHhcCCCEEEeCc---chHHHHHHcCCCEEEe
Confidence 55677777999999886 3578899999999854
No 157
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.93 E-value=1e+02 Score=18.93 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=21.9
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
.+++.++|++|.|..++. +.++.+++ ++|.+++....
T Consensus 39 ~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 39 YLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 344447899999877652 34444332 57777766543
No 158
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=28.92 E-value=79 Score=19.65 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=21.6
Q ss_pred HhhhhcCCCEEEeCCCcc--hHHHHHHHh----CCCeEEEechh
Q 042879 96 VNLQEHKPNCLVADMLFP--WATDAAAKF----GIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~--~~~~vA~~l----giP~v~f~~~~ 133 (189)
+++++.++|+||.|.-++ .+.++.+++ ++|.+++....
T Consensus 40 ~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 40 EIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 334444788888887664 244444443 46666555433
No 159
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=28.78 E-value=40 Score=24.11 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=17.2
Q ss_pred HHHHHHHhhCCCeEEEEeCC
Q 042879 25 VDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~ 44 (189)
..++++|+++|++|+.+.-.
T Consensus 14 ~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 14 SAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp HHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHCCCEEEEEEec
Confidence 57899999999999998754
No 160
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.74 E-value=70 Score=21.10 Aligned_cols=13 Identities=8% Similarity=0.345 Sum_probs=7.3
Q ss_pred cCCCEEEeCCCcc
Q 042879 101 HKPNCLVADMLFP 113 (189)
Q Consensus 101 ~~~d~vI~D~~~~ 113 (189)
.++|+||.|..+.
T Consensus 57 ~~~dlvi~D~~l~ 69 (153)
T 3hv2_A 57 REVDLVISAAHLP 69 (153)
T ss_dssp SCCSEEEEESCCS
T ss_pred CCCCEEEEeCCCC
Confidence 3566666665543
No 161
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae}
Probab=28.56 E-value=98 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=27.9
Q ss_pred ccEEEEecCCCCcChH---HHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMI---PLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~---P~l~La~~La~~G~~Vt~~t~~ 44 (189)
++.|+++..-+.+.-. -+..|++.|.++|++|.++..+
T Consensus 5 ~~~vl~lHG~g~~~~~~~~~~~~l~~~l~~~g~~v~~~d~p 45 (243)
T 1ycd_A 5 IPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAP 45 (243)
T ss_dssp CCEEEEECCTTCCHHHHHHHTHHHHHHHHHTTCEEEEECCS
T ss_pred CceEEEeCCCCccHHHHHHHHHHHHHHHhhcceEEEEcCCC
Confidence 5688888876654432 2447889998889999888766
No 162
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=28.35 E-value=1.3e+02 Score=21.28 Aligned_cols=39 Identities=5% Similarity=-0.072 Sum_probs=32.5
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
...+.+.-+.|.|--.=+..|++.|..+|.+|.++....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 346777788888999999999999999999998887553
No 163
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}
Probab=28.27 E-value=1.1e+02 Score=21.42 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=27.1
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+-|+++.- ..|+-.-+..+++.|+++|+.|..+..
T Consensus 33 p~vv~~HG-~~g~~~~~~~~~~~l~~~G~~v~~~d~ 67 (241)
T 3f67_A 33 PIVIVVQE-IFGVHEHIRDLCRRLAQEGYLAIAPEL 67 (241)
T ss_dssp EEEEEECC-TTCSCHHHHHHHHHHHHTTCEEEEECT
T ss_pred CEEEEEcC-cCccCHHHHHHHHHHHHCCcEEEEecc
Confidence 45566553 557777889999999999999888765
No 164
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=28.26 E-value=43 Score=21.66 Aligned_cols=12 Identities=0% Similarity=0.077 Sum_probs=6.6
Q ss_pred CCCEEEeCCCcc
Q 042879 102 KPNCLVADMLFP 113 (189)
Q Consensus 102 ~~d~vI~D~~~~ 113 (189)
++|+||.|..++
T Consensus 50 ~~dlvi~D~~l~ 61 (136)
T 3kto_A 50 DAIGMIIEAHLE 61 (136)
T ss_dssp TEEEEEEETTGG
T ss_pred CCCEEEEeCcCC
Confidence 456666665543
No 165
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=28.23 E-value=85 Score=19.44 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=20.2
Q ss_pred hhhhcCCCEEEeCCCcc---hHHHHHHH-------hCCCeEEE
Q 042879 97 NLQEHKPNCLVADMLFP---WATDAAAK-------FGIPRLVF 129 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~---~~~~vA~~-------lgiP~v~f 129 (189)
.+++.++|+||.|..+. .+.++.++ -++|.+++
T Consensus 44 ~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 44 QIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 33444789999998665 23333332 36788777
No 166
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=28.22 E-value=41 Score=22.85 Aligned_cols=18 Identities=6% Similarity=0.194 Sum_probs=14.1
Q ss_pred HHHHHHHhhCCCeEEEEe
Q 042879 25 VDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t 42 (189)
-.||++|...|.+|++--
T Consensus 78 ~~Lc~RL~~AG~~V~lk~ 95 (139)
T 3noh_A 78 DSLCERLNDAGADVQIKQ 95 (139)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcCCCceecc
Confidence 357778888899999854
No 167
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=28.12 E-value=68 Score=23.61 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=28.7
Q ss_pred cEEEEecCCCCcC-----hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGH-----MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH-----~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++| |.|= -.+..+|++.|.++|.+|.|..-+
T Consensus 47 ~~ViIVP--GYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHP 86 (203)
T 2fsv_C 47 SKVIIVP--GYGMAVAQAQHALREMADVLKKEGVEVSYAIHP 86 (203)
T ss_dssp SEEEEEE--CHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CcEEEEc--CchHhHHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4788887 5543 268899999999999999998866
No 168
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=28.04 E-value=40 Score=26.12 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=24.5
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
...+|.++-.-.+| ..+|+.|+++|++|+++...
T Consensus 8 ~~~~IgiIG~G~mG-----~~~A~~l~~~G~~V~~~dr~ 41 (306)
T 3l6d_A 8 FEFDVSVIGLGAMG-----TIMAQVLLKQGKRVAIWNRS 41 (306)
T ss_dssp CSCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECSS
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 34578888543334 35789999999999988654
No 169
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=27.88 E-value=41 Score=22.31 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=25.3
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.||+++-. |.+ -..+++.|.++|++|+++...
T Consensus 6 ~~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECC---SHH--HHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECC---CHH--HHHHHHHHHHCCCeEEEEECC
Confidence 357888754 554 457899999999999998764
No 170
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=27.77 E-value=83 Score=20.70 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=7.9
Q ss_pred HHHHHHHhhCCCeEEE
Q 042879 25 VDMAKLFGSRGVKTTV 40 (189)
Q Consensus 25 l~La~~La~~G~~Vt~ 40 (189)
..|.+.|...|++|+.
T Consensus 17 ~~l~~~L~~~g~~v~~ 32 (155)
T 1qkk_A 17 KAMQQTLELAGFTVSS 32 (155)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCcEEEE
Confidence 3344445455655543
No 171
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=27.73 E-value=1.1e+02 Score=22.47 Aligned_cols=38 Identities=8% Similarity=0.198 Sum_probs=33.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
...+++...+|.|--.-...|+..|+ +|.+|.++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 45778888899999999999999999 999999998664
No 172
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=27.67 E-value=70 Score=23.63 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=28.8
Q ss_pred cEEEEecCCCCcC-----hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGH-----MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH-----~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++| |.|= -.+..+|++.|.++|.+|.|..-+
T Consensus 46 ~~ViIVP--GYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHP 85 (207)
T 1djl_A 46 NSIIITP--GYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHP 85 (207)
T ss_dssp SEEEEEE--CHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CeEEEEC--CchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCc
Confidence 4788887 5553 368899999999999999998866
No 173
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=27.66 E-value=89 Score=22.13 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=7.5
Q ss_pred cCCCEEEeCCCcc
Q 042879 101 HKPNCLVADMLFP 113 (189)
Q Consensus 101 ~~~d~vI~D~~~~ 113 (189)
.++|+||.|..++
T Consensus 45 ~~~dlvllD~~l~ 57 (225)
T 1kgs_A 45 EPFDVVILDIMLP 57 (225)
T ss_dssp SCCSEEEEESCCS
T ss_pred CCCCEEEEeCCCC
Confidence 3566666665543
No 174
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=27.66 E-value=78 Score=23.22 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=23.8
Q ss_pred CHHHhhhhcCCCEEEeCCC--cchHHHHHHHhCCCeEEEech
Q 042879 93 DMPVNLQEHKPNCLVADML--FPWATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~--~~~~~~vA~~lgiP~v~f~~~ 132 (189)
+++++ .+++||+||.... .....+--++.|||++.+...
T Consensus 49 n~E~i-~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~ 89 (245)
T 1n2z_A 49 NLERI-VALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDAT 89 (245)
T ss_dssp CHHHH-HHTCCSEEEECTTTSCHHHHHHHHHHTCCEEECCCC
T ss_pred CHHHH-hccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCCC
Confidence 34344 4568999998532 222333445889999987643
No 175
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=27.49 E-value=66 Score=23.76 Aligned_cols=37 Identities=8% Similarity=-0.022 Sum_probs=23.6
Q ss_pred CHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEEe
Q 042879 93 DMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVFH 130 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~ 130 (189)
++++++ +++||+||...... ...+--++.|||++.+.
T Consensus 51 n~E~i~-~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 51 SSEGIL-SLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp CHHHHH-TTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred CHHHHH-ccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEec
Confidence 444444 55899999865432 22333467899998874
No 176
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.47 E-value=91 Score=20.39 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=22.6
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
+.+++.++|+||.|.-+.. +.++.+++ ++|.+++....
T Consensus 60 ~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 60 QLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3444457899999987642 34444332 57776666543
No 177
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.46 E-value=81 Score=22.80 Aligned_cols=11 Identities=18% Similarity=0.779 Sum_probs=5.5
Q ss_pred CCCEEEeCCCc
Q 042879 102 KPNCLVADMLF 112 (189)
Q Consensus 102 ~~d~vI~D~~~ 112 (189)
++|+||.|..+
T Consensus 49 ~~dlvilD~~l 59 (238)
T 2gwr_A 49 RPDLVLLDLML 59 (238)
T ss_dssp CCSEEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 45555555443
No 178
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=27.45 E-value=55 Score=24.34 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCCEEEeCCCcchHHHHHHHhCCCeEEEec
Q 042879 102 KPNCLVADMLFPWATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 102 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 131 (189)
.+.+||+|---..+...|+++|||++.+-.
T Consensus 37 ~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 37 VISCVISNNAEARGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp EEEEEEESCTTCTHHHHHHHTTCCEEECCB
T ss_pred EEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 356789975333467899999999998754
No 179
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=27.45 E-value=97 Score=22.78 Aligned_cols=37 Identities=19% Similarity=0.460 Sum_probs=24.8
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh----CCCeEEEechh
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF----GIPRLVFHGTS 133 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l----giP~v~f~~~~ 133 (189)
.+++.+||+||.|..++. +.++.+++ ++|.+++....
T Consensus 76 ~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 76 KAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 344458999999998764 34555443 58887776654
No 180
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=27.45 E-value=89 Score=22.33 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=27.1
Q ss_pred EEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEe
Q 042879 10 IIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 10 vl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t 42 (189)
|.+... +|.|--.-...||..|+++|.+|-++-
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 444443 678999999999999999999999863
No 181
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.42 E-value=82 Score=20.20 Aligned_cols=35 Identities=6% Similarity=-0.061 Sum_probs=22.3
Q ss_pred Hhhhh-cCCCEEEeCCCcc--hHHHHHHHh-----CCCeEEEe
Q 042879 96 VNLQE-HKPNCLVADMLFP--WATDAAAKF-----GIPRLVFH 130 (189)
Q Consensus 96 ~ll~~-~~~d~vI~D~~~~--~~~~vA~~l-----giP~v~f~ 130 (189)
+.+++ .++|+||.|..+. .+.++.+++ ++|.+++.
T Consensus 53 ~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 53 QHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 34445 5799999998765 345555544 46666665
No 182
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=27.34 E-value=75 Score=24.28 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=24.4
Q ss_pred hhhhcCCCEEEeCCCcc-h--H----HHHHHHhCCCeEEEech
Q 042879 97 NLQEHKPNCLVADMLFP-W--A----TDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~-~--~----~~vA~~lgiP~v~f~~~ 132 (189)
.+++.+||+||.|..++ . + ..+-+..++|.+.++..
T Consensus 200 ~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 200 AVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESC
T ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCC
Confidence 34445899999999887 2 2 23333338998887764
No 183
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=27.34 E-value=64 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=20.3
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
||+.|++.+ ++|...||++.++...
T Consensus 47 Gh~v~l~~l-~~lQ~~G~~~i~lIgd 71 (419)
T 2ts1_A 47 GHLATILTM-RRFQQAGHRPIALVGG 71 (419)
T ss_dssp GGHHHHHHH-HHHHHTTCEEEEEECT
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEcC
Confidence 999986665 6888899999988754
No 184
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=27.31 E-value=45 Score=23.32 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=23.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|++.- +-|-+ -.+++++|+++|++|+.+.-.
T Consensus 4 ~~ilVtG--atG~i--G~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIFG--ATGQT--GLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CEEEEES--TTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEc--CCcHH--HHHHHHHHHHCCCeEEEEEeC
Confidence 3666654 33433 467899999999999988753
No 185
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=27.15 E-value=1.1e+02 Score=20.74 Aligned_cols=35 Identities=6% Similarity=-0.014 Sum_probs=24.1
Q ss_pred EEecCCCCcCh--HHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 11 IFFPLMAHGHM--IPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 11 l~~p~p~~GH~--~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+++..+-.|+- .--++++..++..|++|+++-...
T Consensus 10 ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~D 46 (136)
T 2hy5_B 10 YLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD 46 (136)
T ss_dssp EEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGG
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhH
Confidence 33444445654 445788999999999999876654
No 186
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=27.02 E-value=38 Score=26.41 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCCeEEEEe
Q 042879 25 VDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t 42 (189)
+-+|..|+++|++|+++=
T Consensus 17 l~~A~~La~~G~~V~v~E 34 (397)
T 3oz2_A 17 STAARYAAKYGLKTLMIE 34 (397)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567889999999999984
No 187
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=27.01 E-value=1e+02 Score=24.29 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=32.5
Q ss_pred cEEEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
..|+++.. +|.|--.-...||..|+++|.+|-++.++..
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45555544 6679999999999999999999999998863
No 188
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=26.91 E-value=79 Score=20.54 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=20.1
Q ss_pred hhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEec
Q 042879 98 LQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHG 131 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~ 131 (189)
+++.++|+||.|..++. +.++.+++ ++|.+++..
T Consensus 45 ~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 45 ALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 33447899999987652 44444432 466665543
No 189
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=26.84 E-value=1.2e+02 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=23.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+|+++ +.|- --..+++.+.+.|+++.++.+..
T Consensus 6 ~~kiLI~---g~g~--~a~~i~~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 6 IKSILIA---NRGE--IALRALRTIKEMGKKAICVYSEA 39 (446)
T ss_dssp CCEEEEC---CCHH--HHHHHHHHHHHTTCEEEEEEEGG
T ss_pred cceEEEE---CCCH--HHHHHHHHHHHcCCEEEEEEcCc
Confidence 3467774 3443 45688888888999998886543
No 190
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=26.71 E-value=76 Score=19.96 Aligned_cols=36 Identities=6% Similarity=0.129 Sum_probs=21.6
Q ss_pred hhhhcCCCEEEeCCCcc--hHHHHHHHh-------CCCeEEEech
Q 042879 97 NLQEHKPNCLVADMLFP--WATDAAAKF-------GIPRLVFHGT 132 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~--~~~~vA~~l-------giP~v~f~~~ 132 (189)
.+++.++|+||.|..++ .+.++.+++ ++|.+++...
T Consensus 46 ~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 46 IMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 34444789999998775 345555544 3455555443
No 191
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36
Probab=26.68 E-value=1.3e+02 Score=20.73 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=24.6
Q ss_pred ccEEEEecCC----CCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 7 KLHIIFFPLM----AHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 7 ~~hvl~~p~p----~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
++-|+++.-- +.+.-.-+..+++.|+++|+.|..+..
T Consensus 37 ~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~ 77 (220)
T 2fuk_A 37 PVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNF 77 (220)
T ss_dssp SEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECC
T ss_pred cCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEec
Confidence 4566666631 223334467899999999998877654
No 192
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=26.57 E-value=50 Score=27.02 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=20.1
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
||+.|++.+. +|...||++.++...
T Consensus 81 Ghlv~l~~l~-~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 81 GHLLPLMPLF-WMYLEGYKAFTLIGG 105 (392)
T ss_dssp GGHHHHHHHH-HHHHHTCEEEEEECT
T ss_pred HHHHHHHHHH-HHHHcCCcEEEEEcC
Confidence 9999877664 777789999988754
No 193
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=26.51 E-value=68 Score=22.48 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHhhCCCeEEE
Q 042879 20 HMIPLVDMAKLFGSRGVKTTV 40 (189)
Q Consensus 20 H~~P~l~La~~La~~G~~Vt~ 40 (189)
|-.-...|.+.|...|++|..
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~ 33 (208)
T 1yio_A 13 DMSVREGLRNLLRSAGFEVET 33 (208)
T ss_dssp CHHHHHHHHHHHHTTTCEEEE
T ss_pred CHHHHHHHHHHHHhCCceEEE
Confidence 333344445555555666553
No 194
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=26.47 E-value=52 Score=22.81 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=17.4
Q ss_pred hhcCCCEEEeCCCcch--HHHHHHH-----hCCCeEEEech
Q 042879 99 QEHKPNCLVADMLFPW--ATDAAAK-----FGIPRLVFHGT 132 (189)
Q Consensus 99 ~~~~~d~vI~D~~~~~--~~~vA~~-----lgiP~v~f~~~ 132 (189)
++.+||+||.|..++. +.+++++ -++|.+++...
T Consensus 48 ~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 48 GAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp TTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESS
T ss_pred hhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCC
Confidence 3336777777776542 2333322 24665555543
No 195
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.45 E-value=82 Score=20.32 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=19.5
Q ss_pred hhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEech
Q 042879 98 LQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGT 132 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~ 132 (189)
+++.++|+||.|..++. +.++.+++ ++|.+++...
T Consensus 44 l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 44 IERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp HHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 33447888888876642 34444332 4566655543
No 196
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=26.39 E-value=1e+02 Score=22.55 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-.+++++|+++|++|+++.-.
T Consensus 20 G~~la~~l~~~G~~V~~~~r~ 40 (264)
T 2pd6_A 20 GRAVSVRLAGEGATVAACDLD 40 (264)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999887643
No 197
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=26.34 E-value=74 Score=24.51 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=24.9
Q ss_pred CHHHhhhhcCCCEEEeCCCcc-hHHHHHHHhCCCeEEEech
Q 042879 93 DMPVNLQEHKPNCLVADMLFP-WATDAAAKFGIPRLVFHGT 132 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~f~~~ 132 (189)
+++++ -+++||+||...... ...+--++.|||++.+...
T Consensus 76 n~E~i-~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~ 115 (326)
T 3psh_A 76 NIESL-LALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLR 115 (326)
T ss_dssp CHHHH-HHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSC
T ss_pred CHHHH-HccCCCEEEEeCCCChHHHHHHHHcCCCEEEEecc
Confidence 44444 455899999865432 2233346789999988643
No 198
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.33 E-value=99 Score=19.53 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=22.7
Q ss_pred HHhhhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 95 PVNLQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 95 ~~ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
.+.+++.++|+||.|..++. +.++.+++ ++|.+++....
T Consensus 39 ~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 39 VQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp HHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCC
Confidence 34555558999999987652 34444332 46766555433
No 199
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=26.21 E-value=43 Score=25.51 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=23.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|.++-....| ..+|+.|+++||+|+++...
T Consensus 4 m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CeEEEECcCHHH-----HHHHHHHHhCCCcEEEEECC
Confidence 478887643334 35788999999999998653
No 200
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=26.10 E-value=1.1e+02 Score=19.47 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=22.3
Q ss_pred cChHHHHHHHHHHhhC-CC-eEEEEeCCcc
Q 042879 19 GHMIPLVDMAKLFGSR-GV-KTTVITTPAN 46 (189)
Q Consensus 19 GH~~P~l~La~~La~~-G~-~Vt~~t~~~~ 46 (189)
......+.+|..+++. |+ +|+++-...-
T Consensus 16 ~~~~~al~~a~~~~~~~g~~~v~vff~~dg 45 (117)
T 1jx7_A 16 ESLFNSLRLAIALREQESNLDLRLFLMSDA 45 (117)
T ss_dssp SHHHHHHHHHHHHHHHCTTCEEEEEECGGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEEEchH
Confidence 4566779999999988 99 9998876543
No 201
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31
Probab=26.09 E-value=92 Score=21.14 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=23.9
Q ss_pred ccEEEEecCCCCcChHHHHH-HHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVD-MAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~-La~~La~~G~~Vt~~t~~ 44 (189)
++.|++++-.+.+.-..... +++.|+++|++|..+...
T Consensus 4 ~p~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 42 (192)
T 1uxo_A 4 TKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMP 42 (192)
T ss_dssp CCEEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCS
T ss_pred CCEEEEEcCCCCCcchhHHHHHHHHHHhCCcEEEEecCC
Confidence 45688888655433212223 445788899999887654
No 202
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=25.98 E-value=1e+02 Score=21.87 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=7.1
Q ss_pred HHHHHHHhhCCCeEE
Q 042879 25 VDMAKLFGSRGVKTT 39 (189)
Q Consensus 25 l~La~~La~~G~~Vt 39 (189)
..|...|...|++|.
T Consensus 21 ~~l~~~L~~~g~~v~ 35 (233)
T 1ys7_A 21 ASLERGLRLSGFEVA 35 (233)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCCEEE
Confidence 334444444555544
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=25.95 E-value=1.2e+02 Score=24.90 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=33.4
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhC-CCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSR-GVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~-G~~Vt~~t~~~~ 46 (189)
..|+++..+|.|--+-...||..|+.+ |.+|.++.....
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 356666777889999999999999998 999999988754
No 204
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=25.94 E-value=1.4e+02 Score=22.99 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=27.3
Q ss_pred CccEEEEecCCCCcCh-HHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 6 RKLHIIFFPLMAHGHM-IPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~-~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
++..+++-|..+.|.. .-.-++.+.|.++|+++++..|...
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~ 50 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQ 50 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCST
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCc
Confidence 4445666666666653 2345677778888999999876643
No 205
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=25.66 E-value=1.3e+02 Score=19.21 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=15.6
Q ss_pred hhhhcCCCEEEeCCCcc--hHHHHHH
Q 042879 97 NLQEHKPNCLVADMLFP--WATDAAA 120 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~--~~~~vA~ 120 (189)
.+++.++|+||.|..++ .+.++.+
T Consensus 49 ~l~~~~~dlvllD~~lp~~~g~~~~~ 74 (140)
T 3c97_A 49 AYQNRQFDVIIMDIQMPVMDGLEAVS 74 (140)
T ss_dssp HHHHSCCSEEEECTTCCSSCHHHHHH
T ss_pred HHhcCCCCEEEEeCCCCCCcHHHHHH
Confidence 34445799999998775 2444444
No 206
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=25.57 E-value=1e+02 Score=23.46 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=23.5
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|++.- +-|.+ -.+|+++|+++|++|+.+.-.
T Consensus 11 ~~~vlVTG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 44 (342)
T 1y1p_A 11 GSLVLVTG--ANGFV--ASHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp TCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEC--CccHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 34666654 33444 357889999999999987653
No 207
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=25.46 E-value=86 Score=23.63 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=23.6
Q ss_pred CHHHhhhhcCCCEEEeCCCcc--hHHHHHHHhCCCeEEEe
Q 042879 93 DMPVNLQEHKPNCLVADMLFP--WATDAAAKFGIPRLVFH 130 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~ 130 (189)
+++++ -+++||+||...... ...+--++.|||++.+.
T Consensus 51 n~E~i-~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (283)
T 2r79_A 51 AAEGV-LALRPDILIGTEEMGPPPVLKQLEGAGVRVETLS 89 (283)
T ss_dssp CHHHH-HTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECC
T ss_pred CHHHH-HhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEec
Confidence 34444 455899999865432 23344467899998873
No 208
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.44 E-value=57 Score=21.74 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=26.0
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.||+++-+ |.+ -..+++.|.++|++|+++....
T Consensus 7 ~~~viIiG~---G~~--G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGY---GRV--GSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECC---SHH--HHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECc---CHH--HHHHHHHHHHCCCCEEEEECCH
Confidence 458888864 443 3468899999999999998754
No 209
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV}
Probab=25.16 E-value=96 Score=20.59 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=24.3
Q ss_pred CccEEEEecCCCCcCh-HHHHHHHHHHhhCCCeEEEEe
Q 042879 6 RKLHIIFFPLMAHGHM-IPLVDMAKLFGSRGVKTTVIT 42 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~-~P~l~La~~La~~G~~Vt~~t 42 (189)
+++.|+++.--+.+.. .-+..+++.|+++|+.|..+.
T Consensus 3 ~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d 40 (176)
T 2qjw_A 3 SRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPD 40 (176)
T ss_dssp SSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCC
T ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeC
Confidence 3566788775544322 245689999999998765543
No 210
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=25.04 E-value=1.2e+02 Score=18.95 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=20.2
Q ss_pred hhcCCCEEEeCCCcc--hHHHHHHHh-------CCCeEEEech
Q 042879 99 QEHKPNCLVADMLFP--WATDAAAKF-------GIPRLVFHGT 132 (189)
Q Consensus 99 ~~~~~d~vI~D~~~~--~~~~vA~~l-------giP~v~f~~~ 132 (189)
++.++|+||.|..++ .+.++.+++ ++|.+.+...
T Consensus 46 ~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 46 QAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp TTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESS
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecC
Confidence 334689999888765 244444433 3666666544
No 211
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=24.80 E-value=1.3e+02 Score=21.60 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=25.7
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
|+++......+-....++++++.++|++|.++...
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G 144 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIG 144 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEES
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeC
Confidence 45555555456677888999999999998887654
No 212
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=24.79 E-value=48 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=21.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEE
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVI 41 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~ 41 (189)
.||+++-.---| +-+|..|+++|++|+++
T Consensus 2 m~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 2 MHVGIIGAGIGG-----TCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEE
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCCEEEE
Confidence 467776432223 66788899999999998
No 213
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=24.78 E-value=97 Score=22.02 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred CccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.++.|++++-.+ |...-...++..|+++|++|..+.-.
T Consensus 11 ~~~~vvllHG~~-~~~~~~~~~~~~l~~~g~~v~~~D~~ 48 (267)
T 3sty_A 11 VKKHFVLVHAAF-HGAWCWYKIVALMRSSGHNVTALDLG 48 (267)
T ss_dssp CCCEEEEECCTT-CCGGGGHHHHHHHHHTTCEEEEECCT
T ss_pred CCCeEEEECCCC-CCcchHHHHHHHHHhcCCeEEEeccc
Confidence 356788887654 44455668899999999999887643
No 214
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=24.73 E-value=95 Score=22.66 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=18.3
Q ss_pred hcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 100 EHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 100 ~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
+.++|+||.|..++. +.++++++ ++|.+++....
T Consensus 65 ~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 65 ETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp HHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECST
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 336777777766542 33443322 46666655533
No 215
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=24.73 E-value=1.1e+02 Score=21.36 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=29.9
Q ss_pred EEEe-cCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 10 IIFF-PLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 10 vl~~-p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
|.+. +-.|.|--.-...||..|+++|.+|.++-....
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4444 346679999999999999999999999987643
No 216
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=24.67 E-value=1.4e+02 Score=19.01 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=20.8
Q ss_pred cCCCEEEeCCCcch--HHHHHHHh------CCCeEEEechh
Q 042879 101 HKPNCLVADMLFPW--ATDAAAKF------GIPRLVFHGTS 133 (189)
Q Consensus 101 ~~~d~vI~D~~~~~--~~~vA~~l------giP~v~f~~~~ 133 (189)
.++|+||.|..++. +.++++++ .+|.++++...
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCC
Confidence 47999999988763 44444322 46777665543
No 217
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.52 E-value=47 Score=23.77 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=17.1
Q ss_pred HHHHHHHhhCCCeEEEEeCC
Q 042879 25 VDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 25 l~La~~La~~G~~Vt~~t~~ 44 (189)
..++++|+++|++|+.+.-.
T Consensus 14 ~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 14 KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp HHHHHHHTTSSCEEEEEESS
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 57899999999999988754
No 218
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=24.36 E-value=61 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
||+.|++.+ ++|...||++.++...
T Consensus 49 Gh~v~l~~~-~~lQ~~G~~~~~lIgd 73 (420)
T 1jil_A 49 GHLLPFLTL-RRFQEHGHRPIVLIGG 73 (420)
T ss_dssp HHHHHHHHH-HHHHHTTCEEEEEECT
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEcC
Confidence 999986655 5888899999988754
No 219
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=24.10 E-value=1e+02 Score=22.76 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=29.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.|.+..-.|.|--.-...||..|+.+|.+|.++-..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 344555567799999999999999999999998655
No 220
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=24.09 E-value=78 Score=24.57 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=25.2
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|.|+-.-.+|. .+|++|+++||+|++..-.
T Consensus 4 ~kIgfIGlG~MG~-----~mA~~L~~~G~~v~v~dr~ 35 (300)
T 3obb_A 4 KQIAFIGLGHMGA-----PMATNLLKAGYLLNVFDLV 35 (300)
T ss_dssp CEEEEECCSTTHH-----HHHHHHHHTTCEEEEECSS
T ss_pred CEEEEeeehHHHH-----HHHHHHHhCCCeEEEEcCC
Confidence 3677777766664 5799999999999998654
No 221
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=24.06 E-value=49 Score=25.11 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=25.0
Q ss_pred cEEEEecCCCCcCh-HHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHM-IPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~-~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++.-+|- = -=-+-.|++|+++|++|+++...
T Consensus 59 ~~v~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 59 KHVFVIAGPGN--NGGDGLVCARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp CEEEEEECSSH--HHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CeEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEcC
Confidence 47888875542 1 01267899999999999998653
No 222
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=24.04 E-value=1.1e+02 Score=23.33 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHHhhhhcCCCEEEeCCCcc------hHHHHHHHhCCCeEEEec
Q 042879 94 MPVNLQEHKPNCLVADMLFP------WATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~ 131 (189)
+.+++++.++|+|+.-.-.. .+..+|..||+|.+.+-+
T Consensus 104 La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~ 147 (264)
T 1o97_C 104 LTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVA 147 (264)
T ss_dssp HHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceE
Confidence 44566666899998876442 467999999999998764
No 223
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=24.03 E-value=74 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=35.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHHHh
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATLFS 51 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~~~ 51 (189)
+|+++-.-+.|=+.=...+.+.|.++ +.+|++++.+.....+.
T Consensus 2 ~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 46 (326)
T 2gt1_A 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPS 46 (326)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHH
T ss_pred eEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHh
Confidence 78999888889998889999999876 99999999887654443
No 224
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=23.95 E-value=1.1e+02 Score=23.04 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=30.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.|.+..-.|.|--.-...||..|+++|.+|.++-...
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4555555677999999999999999999999986553
No 225
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=23.87 E-value=81 Score=24.28 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=26.2
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHHHhCCCeEEEec
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~ 131 (189)
+.+++.++.||+++..... +..+|++.|++.+.+.+
T Consensus 222 ~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~p 259 (286)
T 3gi1_A 222 DFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSP 259 (286)
T ss_dssp HHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEecc
Confidence 4444558999999986653 45889999999887653
No 226
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=23.83 E-value=59 Score=23.50 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-.+++++|+++|++|+++.-.
T Consensus 18 G~~~a~~l~~~G~~V~~~~r~ 38 (234)
T 2ehd_A 18 GEATARLLHAKGYRVGLMARD 38 (234)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 468999999999999887653
No 227
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=23.78 E-value=59 Score=23.63 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
-.+++++|+++|++|+++.-
T Consensus 14 G~~l~~~L~~~g~~V~~~~r 33 (255)
T 2dkn_A 14 GAALKELLARAGHTVIGIDR 33 (255)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEeC
Confidence 45789999999999998764
No 228
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=23.76 E-value=77 Score=25.15 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=6.8
Q ss_pred CCCEEEeCCCcc
Q 042879 102 KPNCLVADMLFP 113 (189)
Q Consensus 102 ~~d~vI~D~~~~ 113 (189)
+||+||.|..++
T Consensus 49 ~~dlvllD~~mp 60 (394)
T 3eq2_A 49 QPDLVICDLRMP 60 (394)
T ss_dssp CCSEEEECCCSS
T ss_pred CCCEEEEcCCCC
Confidence 556666665554
No 229
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=23.76 E-value=1.4e+02 Score=18.74 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=21.1
Q ss_pred CCCEEEeCCCcch--HHHHHHHh-------CCCeEEEechh
Q 042879 102 KPNCLVADMLFPW--ATDAAAKF-------GIPRLVFHGTS 133 (189)
Q Consensus 102 ~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~~~~ 133 (189)
++|+||.|..++. +.++.+++ ++|.+.+....
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 6899999987763 44555432 47777766544
No 230
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=23.75 E-value=1.4e+02 Score=20.72 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=26.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+-|+++.- ..|.-.-+..+++.|+++|+.|..+..
T Consensus 29 p~vv~~hG-~~~~~~~~~~~~~~l~~~g~~v~~~d~ 63 (236)
T 1zi8_A 29 PVIVIAQD-IFGVNAFMRETVSWLVDQGYAAVCPDL 63 (236)
T ss_dssp EEEEEECC-TTBSCHHHHHHHHHHHHTTCEEEEECG
T ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHhCCcEEEeccc
Confidence 44566554 446666788999999999999887763
No 231
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}
Probab=23.70 E-value=1.1e+02 Score=21.57 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=26.9
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
++-|++++..+ |+-.-+..+++.|+++|++|..+.-.
T Consensus 26 ~~~vv~~hG~~-~~~~~~~~~~~~l~~~G~~v~~~d~~ 62 (286)
T 3qit_A 26 HPVVLCIHGIL-EQGLAWQEVALPLAAQGYRVVAPDLF 62 (286)
T ss_dssp SCEEEEECCTT-CCGGGGHHHHHHHHHTTCEEEEECCT
T ss_pred CCEEEEECCCC-cccchHHHHHHHhhhcCeEEEEECCC
Confidence 45677777544 44445778999999999999887543
No 232
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=23.65 E-value=1.1e+02 Score=20.03 Aligned_cols=17 Identities=0% Similarity=-0.048 Sum_probs=7.9
Q ss_pred ChHHHHHHHHHHhhCCC
Q 042879 20 HMIPLVDMAKLFGSRGV 36 (189)
Q Consensus 20 H~~P~l~La~~La~~G~ 36 (189)
+-.-...|.+.|...|+
T Consensus 17 ~~~~~~~l~~~L~~~~~ 33 (149)
T 1i3c_A 17 SKADSRLVQEVLKTSTI 33 (149)
T ss_dssp CHHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333444455555555
No 233
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=23.61 E-value=60 Score=24.81 Aligned_cols=35 Identities=3% Similarity=-0.023 Sum_probs=25.1
Q ss_pred cEEEEecCCCCcCh-HHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHM-IPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~-~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++.-+|- = -=-+-.|+.|+++|++|+++...
T Consensus 86 ~~vlVlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~ 121 (259)
T 3d3k_A 86 PTVALLCGPHV--KGAQGISCGRHLANHDVQVILFLPN 121 (259)
T ss_dssp CEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred CeEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEec
Confidence 47888875443 1 12367899999999999998653
No 234
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=23.61 E-value=1.1e+02 Score=23.77 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=25.2
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+|.++-...+| ..+|+.|+++|++|+++...
T Consensus 31 ~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 31 ARKITFLGTGSMG-----LPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp CSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 3588888655555 55888899999999998654
No 235
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.59 E-value=62 Score=27.24 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=26.5
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEEE
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLVF 129 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 129 (189)
.+.+++++.++|++|.+. +...+|+++|||.+.+
T Consensus 363 el~~~i~~~~pDl~ig~~---~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 363 VVGDAIARVEPAAIFGTQ---MERHVGKRLNIPCGVI 396 (511)
T ss_dssp HHHHHHHHHCCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCCEEEecc---chHHHHHhcCCCeEec
Confidence 355677777999999764 4678899999998763
No 236
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=23.51 E-value=1e+02 Score=24.33 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.6
Q ss_pred cEEEEecC-CCCcChHHHHHHHHHHhhCCCeEEEEeCCcch
Q 042879 8 LHIIFFPL-MAHGHMIPLVDMAKLFGSRGVKTTVITTPANA 47 (189)
Q Consensus 8 ~hvl~~p~-p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~ 47 (189)
.+|+++.. .|.|--.-...||..|+++|.+|.++.+....
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 45555554 66699999999999999999999999988543
No 237
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.49 E-value=1.4e+02 Score=19.15 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=17.4
Q ss_pred cCCCEEEeCCCcc---hHHHHHH----HhCCCeEEEec
Q 042879 101 HKPNCLVADMLFP---WATDAAA----KFGIPRLVFHG 131 (189)
Q Consensus 101 ~~~d~vI~D~~~~---~~~~vA~----~lgiP~v~f~~ 131 (189)
.++|+||.|..++ .+.++.+ .-++|.+++..
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~ 86 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTA 86 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEES
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEEC
Confidence 4678888887653 2333333 23566665553
No 238
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.44 E-value=1.1e+02 Score=21.75 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=22.2
Q ss_pred CCCEEEeCCCcch--HHHHHHH---------hCCCeEEEechh
Q 042879 102 KPNCLVADMLFPW--ATDAAAK---------FGIPRLVFHGTS 133 (189)
Q Consensus 102 ~~d~vI~D~~~~~--~~~vA~~---------lgiP~v~f~~~~ 133 (189)
++|+||.|..++. +.+++++ .++|.+++....
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 7999999998763 3444432 468888887654
No 239
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=23.43 E-value=74 Score=24.46 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=38.0
Q ss_pred CccEEEEecCCCCcChHHHHHHHHH--------HhhC-CCeEEEEeCCcchHHHhh
Q 042879 6 RKLHIIFFPLMAHGHMIPLVDMAKL--------FGSR-GVKTTVITTPANATLFSK 52 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~l~La~~--------La~~-G~~Vt~~t~~~~~~~~~~ 52 (189)
++.+|++...++-.|-.-..-++.. |..+ |++|..+...-....+..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~ 174 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIK 174 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 3568999999999999998888876 8888 999999988665555433
No 240
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=23.41 E-value=1.5e+02 Score=19.56 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=21.6
Q ss_pred cChHHHHHHHHHHhhCCCeE-EEEeCCc
Q 042879 19 GHMIPLVDMAKLFGSRGVKT-TVITTPA 45 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~V-t~~t~~~ 45 (189)
-....-+.+++.+++.||+| +++-...
T Consensus 15 ~~~~~al~~a~a~~~~g~~v~~vff~~d 42 (130)
T 2hy5_A 15 QASDSAYQFAKAALEKGHEIFRVFFYHD 42 (130)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred HHHHHHHHHHHHHHhcCCeeCEEEEech
Confidence 34567789999999999999 8876654
No 241
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.19 E-value=76 Score=20.42 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=20.2
Q ss_pred HhhhhcCCCEEEeCCCcch--HHHHHH----H---hCCCeEEEech
Q 042879 96 VNLQEHKPNCLVADMLFPW--ATDAAA----K---FGIPRLVFHGT 132 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~~--~~~vA~----~---lgiP~v~f~~~ 132 (189)
+.+++.++|+||.|..+.. +.++.+ . -++|.+++...
T Consensus 40 ~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 40 EQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 3444447899999987653 222222 2 35777766654
No 242
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=23.14 E-value=60 Score=23.75 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.8
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
-.+++++|+++|++|.++.-
T Consensus 20 G~~ia~~l~~~G~~V~~~~r 39 (241)
T 1dhr_A 20 GSRCVQAFRARNWWVASIDV 39 (241)
T ss_dssp HHHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEeC
Confidence 46789999999999988754
No 243
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=23.11 E-value=85 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+|.|+-.-.+|. .+|+.|+++||+|++..-
T Consensus 7 kIgfIGLG~MG~-----~mA~~L~~~G~~V~v~dr 36 (297)
T 4gbj_A 7 KIAFLGLGNLGT-----PIAEILLEAGYELVVWNR 36 (297)
T ss_dssp EEEEECCSTTHH-----HHHHHHHHTTCEEEEC--
T ss_pred cEEEEecHHHHH-----HHHHHHHHCCCeEEEEeC
Confidence 688887665564 589999999999998753
No 244
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=23.07 E-value=55 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-+++|..|+++|.+||++...
T Consensus 13 Gl~~A~~l~~~g~~v~lie~~ 33 (180)
T 2ywl_A 13 GLSAALFLARAGLKVLVLDGG 33 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHCCCcEEEEeCC
Confidence 478999999999999999753
No 245
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=23.01 E-value=1.8e+02 Score=23.08 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=36.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
-+++..-|+.|--.=++++|..++.+|..|.+++.+.....+
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql 89 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQL 89 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 567778899999999999999999999999999998765544
No 246
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=23.01 E-value=85 Score=22.13 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=19.1
Q ss_pred hhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEech
Q 042879 98 LQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGT 132 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~ 132 (189)
+++.+||+||.|..++. +.++.+++ ++|.+++...
T Consensus 47 ~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~ 88 (215)
T 1a04_A 47 AESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVS 88 (215)
T ss_dssp HHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECC
T ss_pred HHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECC
Confidence 33346788888876652 34444332 4565555543
No 247
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=22.90 E-value=90 Score=20.22 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=21.1
Q ss_pred cCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 101 HKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 101 ~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
.++|+||.|..+.. +.++.+++ ++|.+++....
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 57999999987753 33444332 57777666543
No 248
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=22.90 E-value=52 Score=26.28 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=22.6
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
||+.+.+.-.++|.+.||++.++...
T Consensus 28 Gn~~g~l~~~~~lQ~~G~~~~~~IaD 53 (340)
T 2g36_A 28 GHLVGALENWVKLQEEGNECFYFVAD 53 (340)
T ss_dssp HHHHTHHHHHHHHHHTTCEEEEEECH
T ss_pred HhHHHHHHHHHHHHHCCCCEEEEEec
Confidence 89898888888899999999998765
No 249
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=22.89 E-value=98 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=19.4
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEech
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGT 132 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~ 132 (189)
.+++.++|+||.|..+.. +.++.+++ ++|.+++...
T Consensus 56 ~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 56 LIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEcc
Confidence 334447888888876542 33333322 4666655543
No 250
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=22.55 E-value=96 Score=19.07 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=21.5
Q ss_pred hcCCCEEEeCCCcc--hHHHHHHHh----CCCeEEEechh
Q 042879 100 EHKPNCLVADMLFP--WATDAAAKF----GIPRLVFHGTS 133 (189)
Q Consensus 100 ~~~~d~vI~D~~~~--~~~~vA~~l----giP~v~f~~~~ 133 (189)
+.++|++|.|..++ .+.++.+++ ++|.+.+....
T Consensus 43 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp HHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 33789999998765 244454443 57777766544
No 251
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=22.46 E-value=65 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 20 G~~~a~~l~~~G~~V~~~~r~ 40 (244)
T 1cyd_A 20 GRDTVKALHASGAKVVAVTRT 40 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 457899999999999887643
No 252
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=22.43 E-value=1.3e+02 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=34.0
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
...|+++-.++.|--.-...|+..|+.+|.+|.++..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 347888888999999999999999999999999988754
No 253
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=22.40 E-value=65 Score=23.39 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-.+++++|+++|++|+++.-.
T Consensus 20 G~~la~~l~~~G~~V~~~~r~ 40 (248)
T 2pnf_A 20 GRAIAEKLASAGSTVIITGTS 40 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999999887653
No 254
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.36 E-value=1.5e+02 Score=18.51 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=24.8
Q ss_pred CCCCCCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 1 MAGEIRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 1 m~~~~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
|+...++.+|+++- .+-.-...+.+.|.+.|++|+.+.+
T Consensus 1 M~~~~~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~ 39 (130)
T 3eod_A 1 MTQPLVGKQILIVE----DEQVFRSLLDSWFSSLGATTVLAAD 39 (130)
T ss_dssp --CTTTTCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CCCCCCCCeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCC
Confidence 55555566888874 3444556677777788998876543
No 255
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=22.32 E-value=82 Score=26.86 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 20 HMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 20 H~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
++..|.+|++.|.++|++|.++..
T Consensus 65 l~saMr~fa~~L~~~G~~v~y~~~ 88 (522)
T 3zxs_A 65 ILAAMRKFARRLQERGFRVAYSRL 88 (522)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEec
Confidence 568899999999999999999883
No 256
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=22.26 E-value=66 Score=23.55 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=22.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+++.-.+.| =-.+++++|+++|++|.++.-.
T Consensus 15 k~vlVTGas~g---IG~~~a~~l~~~G~~V~~~~r~ 47 (249)
T 3f9i_A 15 KTSLITGASSG---IGSAIARLLHKLGSKVIISGSN 47 (249)
T ss_dssp CEEEETTTTSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEcCC
Confidence 45555543332 2468999999999999887653
No 257
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=22.24 E-value=81 Score=20.29 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=19.9
Q ss_pred hhhhcCCCEEEeCCCcch--HHHHHHHh-----CCCeEEEech
Q 042879 97 NLQEHKPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGT 132 (189)
Q Consensus 97 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~ 132 (189)
.+++.++|+||.|..++. +.++.+++ ++|.+++...
T Consensus 39 ~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (139)
T 2jk1_A 39 ILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGY 81 (139)
T ss_dssp HHHHSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESC
T ss_pred HHhcCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCC
Confidence 334446888888876652 33443322 4566655443
No 258
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=22.15 E-value=66 Score=23.61 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 26 G~~la~~l~~~G~~V~~~~r~ 46 (260)
T 3awd_A 26 GLACVTALAEAGARVIIADLD 46 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467999999999999887654
No 259
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=22.14 E-value=90 Score=23.13 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=30.0
Q ss_pred ccEEEEec--CCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 7 KLHIIFFP--LMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 7 ~~hvl~~p--~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
+.+++.+. -.|.|--.-...||..|+ +|.+|.++-....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 34555543 356699999999999999 9999999976643
No 260
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=22.14 E-value=69 Score=27.14 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=25.4
Q ss_pred HHHhhhhcCCCEEEeCCCcchHHHHHHHhCCCeEE
Q 042879 94 MPVNLQEHKPNCLVADMLFPWATDAAAKFGIPRLV 128 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 128 (189)
+.+++++.++|++|.+. +...+|+++|||.+.
T Consensus 341 l~~~i~~~~pDL~ig~~---~~~~~a~~~giP~~~ 372 (525)
T 3aek_B 341 VEKAIEAAAPELILGTQ---MERNIAKKLGLPCAV 372 (525)
T ss_dssp HHHHHHHHCCSEEEECH---HHHHHHHHHTCCEEE
T ss_pred HHHHHhhcCCCEEEecc---hhHHHHHHcCCCEEE
Confidence 45666666899999874 567899999999875
No 261
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A
Probab=22.14 E-value=90 Score=21.77 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=26.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
++-|+++.- ..|+-.-+..+++.|+++|++|..+...
T Consensus 22 ~~~vv~~HG-~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 58 (251)
T 3dkr_A 22 DTGVVLLHA-YTGSPNDMNFMARALQRSGYGVYVPLFS 58 (251)
T ss_dssp SEEEEEECC-TTCCGGGGHHHHHHHHHTTCEEEECCCT
T ss_pred CceEEEeCC-CCCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 345666554 4466667789999999999998776543
No 262
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=22.13 E-value=81 Score=22.30 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=26.7
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.|++++-.+.+ ..-...++..|+++|++|..+...
T Consensus 5 ~~vv~lHG~~~~-~~~~~~~~~~l~~~g~~vi~~D~~ 40 (258)
T 3dqz_A 5 HHFVLVHNAYHG-AWIWYKLKPLLESAGHRVTAVELA 40 (258)
T ss_dssp CEEEEECCTTCC-GGGGTTHHHHHHHTTCEEEEECCT
T ss_pred CcEEEECCCCCc-cccHHHHHHHHHhCCCEEEEecCC
Confidence 578888765543 344678899999999999887643
No 263
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=22.10 E-value=1.7e+02 Score=22.34 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=31.5
Q ss_pred ccEEEEec--CCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 7 KLHIIFFP--LMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 7 ~~hvl~~p--~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
+.+++++. -+|.|--.-...||..|++.|.+|.++-....
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 34454443 36779999999999999999999999987643
No 264
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=22.09 E-value=2e+02 Score=20.27 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=22.4
Q ss_pred hhhcCCCEEEeCCCcch--HHHHHH----HhCCCeEEEechhH
Q 042879 98 LQEHKPNCLVADMLFPW--ATDAAA----KFGIPRLVFHGTSF 134 (189)
Q Consensus 98 l~~~~~d~vI~D~~~~~--~~~vA~----~lgiP~v~f~~~~a 134 (189)
+++.++|+||.|..++. +.++++ .-++|.+++.....
T Consensus 44 ~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~ 86 (230)
T 2oqr_A 44 FDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 (230)
T ss_dssp HHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHH
T ss_pred HhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCc
Confidence 33447899998887652 333333 33678777766543
No 265
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=22.06 E-value=69 Score=25.15 Aligned_cols=35 Identities=3% Similarity=-0.023 Sum_probs=25.3
Q ss_pred cEEEEecCCCCcCh-HHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHM-IPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~-~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++.-+|- = -=-+-.|+.|+.+|++|+++...
T Consensus 133 ~~vlVlcG~GN--NGGDGlv~AR~L~~~G~~V~V~~~~ 168 (306)
T 3d3j_A 133 PTVALLCGPHV--KGAQGISCGRHLANHDVQVILFLPN 168 (306)
T ss_dssp CEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CeEEEEECCCC--CHHHHHHHHHHHHHCCCcEEEEEec
Confidence 47888875543 1 12367899999999999998654
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=22.00 E-value=2.1e+02 Score=22.08 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=35.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
-+++..-||.|--.=++++|...+.+|..|.+++.+.....+
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l 111 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKEN 111 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHH
Confidence 567778899999999999999999899999999988665443
No 267
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=21.94 E-value=1.4e+02 Score=18.75 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=5.6
Q ss_pred CCCEEEeCCCc
Q 042879 102 KPNCLVADMLF 112 (189)
Q Consensus 102 ~~d~vI~D~~~ 112 (189)
++|+||.|..+
T Consensus 47 ~~dlvl~D~~l 57 (136)
T 1mvo_A 47 KPDLIVLDVML 57 (136)
T ss_dssp CCSEEEEESSC
T ss_pred CCCEEEEecCC
Confidence 45555555443
No 268
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=21.94 E-value=1.3e+02 Score=22.85 Aligned_cols=38 Identities=11% Similarity=0.029 Sum_probs=28.2
Q ss_pred HHHhhhhcCCCEEEeCCCcc------hHHHHHHHhCCCeEEEec
Q 042879 94 MPVNLQEHKPNCLVADMLFP------WATDAAAKFGIPRLVFHG 131 (189)
Q Consensus 94 l~~ll~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~ 131 (189)
+.+++++.++|+|+.-.-.. .+..+|..||+|.+.+-+
T Consensus 108 La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~ 151 (255)
T 1efv_B 108 LAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFAS 151 (255)
T ss_dssp HHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceE
Confidence 44555555899998875442 467999999999998764
No 269
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.81 E-value=59 Score=23.24 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=23.7
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|++.- +-|.+ =..++++|+++|++|+.+.-.
T Consensus 5 ~~ilItG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 5 KKIVLIG--ASGFV--GSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CEEEEET--CCHHH--HHHHHHHHHTTTCEEEEECSC
T ss_pred CEEEEEc--CCchH--HHHHHHHHHHCCCEEEEEEcC
Confidence 4677664 34443 357899999999999988654
No 270
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=21.76 E-value=57 Score=27.17 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=24.5
Q ss_pred CCccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 5 IRKLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 5 ~~~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
..+.+|+++-.-..| +.+|..|+++|++|+++--.
T Consensus 5 ~~~~dVvIVGgG~aG-----l~aA~~La~~G~~V~liE~~ 39 (512)
T 3e1t_A 5 PEVFDLIVIGGGPGG-----STLASFVAMRGHRVLLLERE 39 (512)
T ss_dssp CEEEEEEEECCSHHH-----HHHHHHHHTTTCCEEEECSS
T ss_pred CccCCEEEECcCHHH-----HHHHHHHHhCCCCEEEEccC
Confidence 334578887643223 66777888899999998644
No 271
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=21.76 E-value=74 Score=24.78 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=24.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.++|.++-.-..| ..+|+.|++.||+|+++.-.
T Consensus 14 ~~kI~iIG~G~mG-----~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 14 EMRFFVLGAGSWG-----TVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 4578887654444 46789999999999998754
No 272
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=21.72 E-value=2.1e+02 Score=21.09 Aligned_cols=39 Identities=10% Similarity=-0.108 Sum_probs=32.0
Q ss_pred ccEEEEecCC-CCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLM-AHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p-~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+..+.++.-+ +.|--.-+++++++...+|.+|.++....
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3466666666 88999999999999999999999998553
No 273
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=21.63 E-value=69 Score=23.38 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=21.7
Q ss_pred EEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 10 IIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 10 vl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+++.- +-|-+ =.+++++|+++|++|.++.-.
T Consensus 9 ~vlVTG-asggi--G~~~a~~l~~~G~~V~~~~r~ 40 (258)
T 3afn_B 9 RVLITG-SSQGI--GLATARLFARAGAKVGLHGRK 40 (258)
T ss_dssp EEEETT-CSSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEeC-CCChH--HHHHHHHHHHCCCEEEEECCC
Confidence 344443 33433 457899999999999887653
No 274
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.57 E-value=78 Score=19.78 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=20.7
Q ss_pred CCCEEEeCCCcc--hHHHHHHH-------hCCCeEEEechhH
Q 042879 102 KPNCLVADMLFP--WATDAAAK-------FGIPRLVFHGTSF 134 (189)
Q Consensus 102 ~~d~vI~D~~~~--~~~~vA~~-------lgiP~v~f~~~~a 134 (189)
++|+||.|..++ .+.++.++ -++|.+.+....-
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (127)
T 2jba_A 46 WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGE 87 (127)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 689999998665 24444433 2577777765543
No 275
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=21.55 E-value=1.3e+02 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=27.0
Q ss_pred CCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 16 MAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 16 p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.|.|--.-...||..|+++|.+|.++-...
T Consensus 14 GGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 567999999999999999999999987765
No 276
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=21.55 E-value=1.4e+02 Score=24.74 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=28.6
Q ss_pred CccEEEEecCCCCcC--hHHHHHHHHH--HhhCCCeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGH--MIPLVDMAKL--FGSRGVKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH--~~P~l~La~~--La~~G~~Vt~~t~~ 44 (189)
++.+|+++..-..+| -.-+..|++. |..+||+|++++..
T Consensus 204 ~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~ 246 (568)
T 2vsy_A 204 GPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATS 246 (568)
T ss_dssp SCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECC
Confidence 456898887554444 3557789999 66679999999864
No 277
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=21.47 E-value=2.1e+02 Score=21.83 Aligned_cols=38 Identities=3% Similarity=-0.070 Sum_probs=28.3
Q ss_pred ccEEEEecCCCCc--C---hHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFPLMAHG--H---MIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p~p~~G--H---~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
+.+|+++-. |.+ | +..-.++++.|.+.||+|..+.+..
T Consensus 13 ~~~v~vl~g-g~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVLFG-GESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEECC-CSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEEEC-CCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 457777653 444 3 4578899999999999999998543
No 278
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=21.47 E-value=65 Score=24.77 Aligned_cols=35 Identities=9% Similarity=-0.085 Sum_probs=25.1
Q ss_pred cEEEEecCCCCcCh-HHHHHHHHHHhhCCCeEEEEeCC
Q 042879 8 LHIIFFPLMAHGHM-IPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 8 ~hvl~~p~p~~GH~-~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
.+|+++.-+|- = -=-+..|+.|+++|++|+++...
T Consensus 80 ~~VlVlcG~GN--NGGDGlv~AR~L~~~G~~V~V~~~~ 115 (265)
T 2o8n_A 80 PTVLVICGPGN--NGGDGLVCARHLKLFGYQPTIYYPK 115 (265)
T ss_dssp CEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred CeEEEEECCCC--CHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 47888775542 1 02267899999999999998653
No 279
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=21.43 E-value=71 Score=23.13 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 15 G~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 15 GEAIARALARDGYALALGARS 35 (235)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999998877543
No 280
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=21.38 E-value=70 Score=23.67 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=22.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+++++.-.+ |- =-..++++|+++|++|.++.-.
T Consensus 15 k~vlVTGas-~g--IG~~ia~~l~~~G~~V~~~~r~ 47 (260)
T 2zat_A 15 KVALVTAST-DG--IGLAIARRLAQDGAHVVVSSRK 47 (260)
T ss_dssp CEEEESSCS-SH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCC-cH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 455665433 32 2467899999999999887643
No 281
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=21.36 E-value=70 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 15 G~~~a~~l~~~G~~V~~~~r~ 35 (250)
T 2cfc_A 15 GLAIATRFLARGDRVAALDLS 35 (250)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 457899999999999887643
No 282
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=21.34 E-value=1.3e+02 Score=19.82 Aligned_cols=38 Identities=5% Similarity=0.205 Sum_probs=23.5
Q ss_pred Hhhhhc--CCCEEEeCCCcch--HHHHHHHh-----CCCeEEEechh
Q 042879 96 VNLQEH--KPNCLVADMLFPW--ATDAAAKF-----GIPRLVFHGTS 133 (189)
Q Consensus 96 ~ll~~~--~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~~~~ 133 (189)
+.+++. ++|+||.|..+.. +.++.+++ ++|.+++....
T Consensus 75 ~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 75 IKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp HHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccC
Confidence 344444 6899999987652 34444332 58877766543
No 283
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=21.34 E-value=2.9e+02 Score=25.54 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccCCCCCCCHHHhhhhcC
Q 042879 23 PLVDMAKLFGSRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNEMTSQPDMPVNLQEHK 102 (189)
Q Consensus 23 P~l~La~~La~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~~~~~~~l~~ll~~~~ 102 (189)
-+++++++|.+.|++ ++.|......++.. ++....+.. ..+ ..+.+.+++++-+
T Consensus 956 ~~~~~a~~l~~~G~~--i~aT~gTa~~l~~~---------gi~~~~v~~------~~~---------g~p~i~d~~~~~~ 1009 (1073)
T 1a9x_A 956 RVVDLAAKLLKQGFE--LDATHGTAIVLGEA---------GINPRLVNK------VHE---------GRPHIQDRIKNGE 1009 (1073)
T ss_dssp THHHHHHHHHHTTCE--EEECHHHHHHHHTT---------TCCCEECBC------TTT---------CSSBHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCE--EEEcCchHHHHHhC---------CceEEEEee------cCC---------CCccHHHHHHcCC
Confidence 366888888888875 44555444334321 244333311 111 1256778888889
Q ss_pred CCEEEeCCCcc-------hHHHHHHHhCCCeEEE
Q 042879 103 PNCLVADMLFP-------WATDAAAKFGIPRLVF 129 (189)
Q Consensus 103 ~d~vI~D~~~~-------~~~~vA~~lgiP~v~f 129 (189)
+++||.-.... .....|-+.|||++.-
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~t~ 1043 (1073)
T 1a9x_A 1010 YTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTT 1043 (1073)
T ss_dssp CSEEEECCCSHHHHHHTHHHHHHHHHTTCEEESS
T ss_pred eEEEEECCCCcccccchHHHHHHHHHhCCCEEcc
Confidence 99999855331 2346678899987643
No 284
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=21.29 E-value=71 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-.+++++|+++|++|.++.-.
T Consensus 24 G~~la~~l~~~G~~V~~~~r~ 44 (254)
T 2wsb_A 24 GLEICRAFAASGARLILIDRE 44 (254)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 468899999999999887653
No 285
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=21.29 E-value=70 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=22.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+++.-.+. - =-.+++++|+++|++|.++.-.
T Consensus 23 k~vlITGas~-g--IG~~la~~l~~~G~~V~~~~r~ 55 (251)
T 3orf_A 23 KNILVLGGSG-A--LGAEVVKFFKSKSWNTISIDFR 55 (251)
T ss_dssp CEEEEETTTS-H--HHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEECCCC-H--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4455554332 2 2468999999999999887643
No 286
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=21.27 E-value=70 Score=23.80 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 20 G~~ia~~l~~~G~~V~~~~r~ 40 (260)
T 1nff_A 20 GASHVRAMVAEGAKVVFGDIL 40 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 357899999999999887543
No 287
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=21.23 E-value=65 Score=23.33 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCCCeEEEE
Q 042879 24 LVDMAKLFGSRGVKTTVI 41 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~ 41 (189)
=.+++++|+++|++|+++
T Consensus 14 G~~~a~~l~~~G~~v~~~ 31 (245)
T 2ph3_A 14 GRAIALRLAEDGFALAIH 31 (245)
T ss_dssp HHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 457899999999999887
No 288
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=21.22 E-value=71 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|+++.-.
T Consensus 19 G~~~a~~l~~~G~~V~~~~r~ 39 (251)
T 1zk4_A 19 GLAIATKFVEEGAKVMITGRH 39 (251)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467999999999999887653
No 289
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=20.99 E-value=72 Score=23.39 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=22.3
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+++++.-.+ |- ==.+++++|+++|++|.++.-.
T Consensus 10 k~vlITGas-~g--iG~~~a~~l~~~G~~V~~~~r~ 42 (253)
T 3qiv_A 10 KVGIVTGSG-GG--IGQAYAEALAREGAAVVVADIN 42 (253)
T ss_dssp CEEEEETTT-SH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCC-Ch--HHHHHHHHHHHCCCEEEEEcCC
Confidence 455555433 22 2468999999999998887643
No 290
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=20.99 E-value=72 Score=23.47 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 25 G~~~a~~l~~~G~~V~~~~r~ 45 (265)
T 2o23_A 25 GLATAERLVGQGASAVLLDLP 45 (265)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 468999999999999887654
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=20.97 E-value=2e+02 Score=20.47 Aligned_cols=42 Identities=7% Similarity=-0.117 Sum_probs=35.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcchHHH
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPANATLF 50 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~~~~~ 50 (189)
-+++.-.||.|--.=+++++..++..|..|.++++......+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~ 66 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQV 66 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHH
Confidence 567777899999998899999999999999999988665443
No 292
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=20.94 E-value=58 Score=25.30 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=22.7
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEE
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVI 41 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~ 41 (189)
+.+|.++-..+.| ..+|..|++.|++|+++
T Consensus 19 ~~kI~IiGaGa~G-----~~~a~~L~~~G~~V~l~ 48 (318)
T 3hwr_A 19 GMKVAIMGAGAVG-----CYYGGMLARAGHEVILI 48 (318)
T ss_dssp -CEEEEESCSHHH-----HHHHHHHHHTTCEEEEE
T ss_pred CCcEEEECcCHHH-----HHHHHHHHHCCCeEEEE
Confidence 4578888655445 34788899999999999
No 293
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.94 E-value=1.5e+02 Score=22.82 Aligned_cols=38 Identities=11% Similarity=0.347 Sum_probs=26.4
Q ss_pred CccEEEEecCCCCcChHHH--HHHHHHHhhCC-CeEEEEeCC
Q 042879 6 RKLHIIFFPLMAHGHMIPL--VDMAKLFGSRG-VKTTVITTP 44 (189)
Q Consensus 6 ~~~hvl~~p~p~~GH~~P~--l~La~~La~~G-~~Vt~~t~~ 44 (189)
++.+||++.- ..+|-.+- ..|++.|.+.| ++|++....
T Consensus 3 ~~~kvLiv~G-~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 3 KPIKTLLITG-QNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCEEEEEEES-CCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CceEEEEEcC-CCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 4678999943 33886443 45667777788 999998764
No 294
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=20.93 E-value=73 Score=23.22 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=22.8
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+++++.-.+ |-+ =.+++++|+++|++|.++.-.
T Consensus 15 k~vlITGas-~gI--G~~ia~~l~~~G~~V~~~~r~ 47 (247)
T 3i1j_A 15 RVILVTGAA-RGI--GAAAARAYAAHGASVVLLGRT 47 (247)
T ss_dssp CEEEESSTT-SHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeCCC-ChH--HHHHHHHHHHCCCEEEEEecC
Confidence 566666433 322 357899999999998877543
No 295
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=20.89 E-value=93 Score=25.61 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=34.3
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
..|+++-.+|.|--.-...||..++.+|.+|.++.....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 468888889999999999999999999999999987643
No 296
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=20.88 E-value=1.1e+02 Score=23.58 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=23.4
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+.+|++.- +-|-+ -..|+++|+++|++|+.+.-
T Consensus 27 ~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r 59 (343)
T 2b69_A 27 RKRILITG--GAGFV--GSHLTDKLMMDGHEVTVVDN 59 (343)
T ss_dssp CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEc--CccHH--HHHHHHHHHHCCCEEEEEeC
Confidence 34676654 33433 35788999999999998864
No 297
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A
Probab=20.84 E-value=91 Score=22.94 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=22.2
Q ss_pred EEEEecCCCCcCh--HHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHM--IPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~--~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
-++++...+.+|- .-+..+|+.|+++|+.|..+...
T Consensus 57 p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~r 94 (259)
T 4ao6_A 57 RLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGP 94 (259)
T ss_dssp EEEEEEC--------CHHHHHHHHHHHTTEEEEEECCC
T ss_pred CEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccC
Confidence 3555555555663 24778999999999988877654
No 298
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.83 E-value=1.4e+02 Score=22.93 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=39.6
Q ss_pred cEEEEe-cCCCCcChHHHHHHHHHHhhCCCeEEEEeCC---cchHHHhhhcccccc-CCCceEEEEee
Q 042879 8 LHIIFF-PLMAHGHMIPLVDMAKLFGSRGVKTTVITTP---ANATLFSKAIPRANE-LGIEIDIKTIK 70 (189)
Q Consensus 8 ~hvl~~-p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~---~~~~~~~~~~~~~~~-~~~~i~~~~lp 70 (189)
.+|+++ -.+...+-.=+..++|++.+.|..|+++... .+...++........ .+.+-+++.+|
T Consensus 108 ~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~ 175 (268)
T 4b4t_W 108 QRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVT 175 (268)
T ss_dssp EEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEEC
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeC
Confidence 344444 4677788888999999999999999988754 333344443222111 12345677765
No 299
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=20.83 E-value=73 Score=23.41 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=..++++|+++|++|+++.-.
T Consensus 18 G~~ia~~l~~~G~~V~~~~r~ 38 (245)
T 1uls_A 18 GRATLELFAKEGARLVACDIE 38 (245)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 457899999999999887543
No 300
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.79 E-value=1.4e+02 Score=19.11 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=8.4
Q ss_pred HHHHHHHHhhCCCeEEE
Q 042879 24 LVDMAKLFGSRGVKTTV 40 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~ 40 (189)
...|.+.|...|++|..
T Consensus 16 ~~~l~~~l~~~g~~v~~ 32 (143)
T 3jte_A 16 LQNIKFLLEIDGNEVLT 32 (143)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCceEEE
Confidence 33444455555655543
No 301
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=20.76 E-value=1.5e+02 Score=22.53 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=20.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
-+++.|.|---=+ -.-.+..+++++|++|++++..
T Consensus 10 vLvv~aHPDDe~l-g~GGtia~~~~~G~~V~vv~~T 44 (273)
T 3dff_A 10 LLAISPHLDDAVL-SFGAGLAQAAQDGANVLVYTVF 44 (273)
T ss_dssp EEEEESSTTHHHH-HHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEEeCCChHHH-hHHHHHHHHHHCCCcEEEEEEe
Confidence 3445555543322 2334445566789999998743
No 302
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=20.70 E-value=61 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
-.+++++|+++|++|.++.-
T Consensus 16 G~~~a~~l~~~G~~V~~~~r 35 (236)
T 1ooe_A 16 GSAILEFFKKNGYTVLNIDL 35 (236)
T ss_dssp HHHHHHHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEec
Confidence 46899999999999988753
No 303
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Probab=20.69 E-value=1.8e+02 Score=20.58 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=26.2
Q ss_pred ccEEEEecCCCCcC--hHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 7 KLHIIFFPLMAHGH--MIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 7 ~~hvl~~p~p~~GH--~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
++-|+++.-. .|+ ..-+..+++.|+++|+.|..+...
T Consensus 46 ~p~vv~~HG~-~~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 84 (270)
T 3pfb_A 46 YDMAIIFHGF-TANRNTSLLREIANSLRDENIASVRFDFN 84 (270)
T ss_dssp EEEEEEECCT-TCCTTCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CCEEEEEcCC-CCCccccHHHHHHHHHHhCCcEEEEEccc
Confidence 4456666543 333 556789999999999998887654
No 304
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=20.65 E-value=1.1e+02 Score=25.93 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=32.0
Q ss_pred ccEEEEec-CCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 7 KLHIIFFP-LMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 7 ~~hvl~~p-~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
..+++++. -+|.|--.-...||..|+++|.+|-++.+..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 34555554 4677999999999999999999999999885
No 305
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.60 E-value=1.5e+02 Score=17.77 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=22.0
Q ss_pred HhhhhcCCCEEEeCCCcc--hHHHHHH----H---hCCCeEEEech
Q 042879 96 VNLQEHKPNCLVADMLFP--WATDAAA----K---FGIPRLVFHGT 132 (189)
Q Consensus 96 ~ll~~~~~d~vI~D~~~~--~~~~vA~----~---lgiP~v~f~~~ 132 (189)
+.+++.++|+||.|..+. .+.++.+ . -++|.+.+...
T Consensus 39 ~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 39 DQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 334444799999997654 2333332 2 36788777654
No 306
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=20.57 E-value=74 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
-.+++++|+++|++|.++.-
T Consensus 14 G~~~a~~l~~~G~~V~~~~r 33 (257)
T 1fjh_A 14 GAATRKVLEAAGHQIVGIDI 33 (257)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 45789999999999988753
No 307
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.53 E-value=1.3e+02 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=33.0
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCcc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPAN 46 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~~ 46 (189)
.-|+++-.+|.|--+-...||..|+.+|.+|.++.....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 356666778889999999999999999999999887644
No 308
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=20.52 E-value=75 Score=23.23 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 16 G~a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 16 GRALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 367899999999998887543
No 309
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.47 E-value=1.4e+02 Score=19.11 Aligned_cols=11 Identities=9% Similarity=0.455 Sum_probs=5.4
Q ss_pred CCCEEEeCCCc
Q 042879 102 KPNCLVADMLF 112 (189)
Q Consensus 102 ~~d~vI~D~~~ 112 (189)
++|+||.|..+
T Consensus 52 ~~dlii~d~~l 62 (147)
T 2zay_A 52 HPHLIITEANM 62 (147)
T ss_dssp CCSEEEEESCC
T ss_pred CCCEEEEcCCC
Confidence 45555555433
No 310
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=20.47 E-value=1.2e+02 Score=25.76 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=24.7
Q ss_pred CHHHhhhhcCCCEEEeCCCcchHHHHHHHh-------CCCeEE
Q 042879 93 DMPVNLQEHKPNCLVADMLFPWATDAAAKF-------GIPRLV 128 (189)
Q Consensus 93 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~l-------giP~v~ 128 (189)
.+++++++.++|++|.... ...+|+++ |||.+.
T Consensus 429 ~l~~~i~~~~pDLlig~s~---~k~~a~~~~~~~~~~giP~ir 468 (523)
T 3u7q_B 429 HLRSLVFTDKPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIR 468 (523)
T ss_dssp HHHHHHHHTCCSEEEECTT---HHHHHHHHHHHCGGGCCCEEE
T ss_pred HHHHHHHhcCCCEEEECcc---HHHHHHHhhcccccCCCceEE
Confidence 3557777779999998863 45566666 999875
No 311
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=20.46 E-value=82 Score=23.10 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.4
Q ss_pred CEEEeCCCcchHHHHHHHhCCCeEEEechh
Q 042879 104 NCLVADMLFPWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 104 d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 133 (189)
.+...|+=......+|+++|+|++.+...+
T Consensus 171 ga~~veME~aa~a~~a~~~gip~~~ir~Is 200 (233)
T 3eei_A 171 EVKAVEMEAAAIAQTCHQLETPFVIIRAVS 200 (233)
T ss_dssp TEEEEESSHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CceEEechHHHHHHHHHHcCCCEEEEEEEe
Confidence 888889876667789999999998877644
No 312
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=20.44 E-value=75 Score=23.44 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=21.9
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+++.-.+ |- ==.+++++|+++|++|.++.-.
T Consensus 20 k~vlVTGas-~g--IG~~~a~~l~~~G~~V~~~~r~ 52 (249)
T 1o5i_A 20 KGVLVLAAS-RG--IGRAVADVLSQEGAEVTICARN 52 (249)
T ss_dssp CEEEEESCS-SH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCC-CH--HHHHHHHHHHHCCCEEEEEcCC
Confidence 445555333 32 2457899999999999887643
No 313
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=20.43 E-value=62 Score=24.13 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=24.5
Q ss_pred cEEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCCc
Q 042879 8 LHIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTPA 45 (189)
Q Consensus 8 ~hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~~ 45 (189)
.+|++.- + |.+ -.+|+++|.++|++|+.++-..
T Consensus 6 ~~ilVtG--a-G~i--G~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 6 GTLLSFG--H-GYT--ARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CEEEEET--C-CHH--HHHHHHHHGGGTCEEEEEESCG
T ss_pred CcEEEEC--C-cHH--HHHHHHHHHHCCCEEEEEEcCh
Confidence 4777775 4 554 3468999999999999987543
No 314
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=20.35 E-value=58 Score=23.55 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
=.+++++|+++|++|.++.-
T Consensus 15 G~~la~~l~~~G~~V~~~~r 34 (242)
T 1uay_A 15 GRAAALALKARGYRVVVLDL 34 (242)
T ss_dssp HHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEcc
Confidence 36789999999999988754
No 315
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=20.32 E-value=77 Score=23.12 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-..++++|+++|++|.++.-.
T Consensus 15 G~~~a~~l~~~G~~V~~~~r~ 35 (239)
T 2ekp_A 15 GRAIAEALVARGYRVAIASRN 35 (239)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999887644
No 316
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=20.32 E-value=75 Score=23.62 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=22.2
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+++++.-.+ |-+ -.+++++|+++|++|.++.-.
T Consensus 14 k~vlVTGas-~gI--G~~ia~~l~~~G~~V~~~~r~ 46 (267)
T 1iy8_A 14 RVVLITGGG-SGL--GRATAVRLAAEGAKLSLVDVS 46 (267)
T ss_dssp CEEEEETTT-SHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCC-CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 455555433 322 467899999999999887543
No 317
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=20.29 E-value=76 Score=23.24 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=21.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+++++.-.+ |- =-..++++|+++|++|.++.-
T Consensus 7 k~vlVTGas-~g--IG~~ia~~l~~~G~~V~~~~r 38 (246)
T 2ag5_A 7 KVIILTAAA-QG--IGQAAALAFAREGAKVIATDI 38 (246)
T ss_dssp CEEEESSTT-SH--HHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCC-cH--HHHHHHHHHHHCCCEEEEEEC
Confidence 445555333 32 246789999999999988754
No 318
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=20.29 E-value=80 Score=22.54 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=50.7
Q ss_pred EEEEecCCCCcChHHHHHHHHHHh-hCCCeEEEEeCCcchHHHhhhccccccCCCceEEEEeeCCCCCCCCCCCCCcccC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFG-SRGVKTTVITTPANATLFSKAIPRANELGIEIDIKTIKFPSVEVGLPEGSENLNE 87 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La-~~G~~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~p~~~~~~~~ 87 (189)
+|++.- +-|-+ =..++++|+ ++|++|+++.-.... ...... ....++.++.. ++.
T Consensus 7 ~vlVtG--asg~i--G~~~~~~l~~~~g~~V~~~~r~~~~-~~~~~~----~~~~~~~~~~~-------D~~-------- 62 (221)
T 3r6d_A 7 YITILG--AAGQI--AQXLTATLLTYTDMHITLYGRQLKT-RIPPEI----IDHERVTVIEG-------SFQ-------- 62 (221)
T ss_dssp EEEEES--TTSHH--HHHHHHHHHHHCCCEEEEEESSHHH-HSCHHH----HTSTTEEEEEC-------CTT--------
T ss_pred EEEEEe--CCcHH--HHHHHHHHHhcCCceEEEEecCccc-cchhhc----cCCCceEEEEC-------CCC--------
Confidence 355544 23333 367899999 899999988653210 111110 01124554433 111
Q ss_pred CCCCCCHHHhhhhcCCCEEEeCCCc-----chHHHHHHHhCCCeEEEechh
Q 042879 88 MTSQPDMPVNLQEHKPNCLVADMLF-----PWATDAAAKFGIPRLVFHGTS 133 (189)
Q Consensus 88 ~~~~~~l~~ll~~~~~d~vI~D~~~-----~~~~~vA~~lgiP~v~f~~~~ 133 (189)
..+.++++++ ++|+||.-.-. ......+++.|+..+++..+.
T Consensus 63 --d~~~~~~~~~--~~d~vv~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~ 109 (221)
T 3r6d_A 63 --NPGXLEQAVT--NAEVVFVGAMESGSDMASIVKALSRXNIRRVIGVSMA 109 (221)
T ss_dssp --CHHHHHHHHT--TCSEEEESCCCCHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred --CHHHHHHHHc--CCCEEEEcCCCCChhHHHHHHHHHhcCCCeEEEEeec
Confidence 1123445554 57888864322 223456677888877765543
No 319
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=20.29 E-value=75 Score=23.76 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=22.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+++++.-.+ |- =-..++++|+++|++|.++.-.
T Consensus 22 k~~lVTGas-~g--IG~~ia~~l~~~G~~V~~~~r~ 54 (267)
T 1vl8_A 22 RVALVTGGS-RG--LGFGIAQGLAEAGCSVVVASRN 54 (267)
T ss_dssp CEEEEETTT-SH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCC-CH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 455555433 32 2468899999999999887643
No 320
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=20.25 E-value=77 Score=23.23 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=16.8
Q ss_pred HHHHHHHHhhCCCeEEEEeC
Q 042879 24 LVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~ 43 (189)
=..++++|+++|++|.++.-
T Consensus 17 G~~ia~~l~~~G~~V~~~~r 36 (246)
T 2uvd_A 17 GRAIAIDLAKQGANVVVNYA 36 (246)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 46789999999999988754
No 321
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=20.23 E-value=75 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=22.0
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+++.- +-|-+ =.+++++|+++|++|+++.-.
T Consensus 12 ~~vlVtG-asggi--G~~la~~l~~~G~~V~~~~r~ 44 (255)
T 1fmc_A 12 KCAIITG-AGAGI--GKEIAITFATAGASVVVSDIN 44 (255)
T ss_dssp CEEEETT-TTSHH--HHHHHHHHHTTTCEEEEEESC
T ss_pred CEEEEEC-CccHH--HHHHHHHHHHCCCEEEEEcCC
Confidence 3444543 33333 467899999999999887653
No 322
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=20.19 E-value=1.2e+02 Score=22.42 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=23.5
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+++++.-.+.| ==..+|++|+++|++|.++.-
T Consensus 12 k~vlVTGas~G---IG~aia~~la~~G~~V~~~~r 43 (262)
T 3ksu_A 12 KVIVIAGGIKN---LGALTAKTFALESVNLVLHYH 43 (262)
T ss_dssp CEEEEETCSSH---HHHHHHHHHTTSSCEEEEEES
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 56666655544 246899999999999988753
No 323
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=20.18 E-value=72 Score=23.57 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=22.4
Q ss_pred EEEEecCCC-CcChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 9 HIIFFPLMA-HGHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 9 hvl~~p~p~-~GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
+.+++.-.+ .|-+ =.+++++|+++|++|.++.-.
T Consensus 15 k~vlITGa~~~~gi--G~~ia~~l~~~G~~V~~~~r~ 49 (271)
T 3ek2_A 15 KRILLTGLLSNRSI--AYGIAKACKREGAELAFTYVG 49 (271)
T ss_dssp CEEEECCCCSTTSH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEeCCCCCCcH--HHHHHHHHHHcCCCEEEEecc
Confidence 445555433 1222 367999999999999887544
No 324
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=20.18 E-value=76 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
-..++++|+++|++|.++.-.
T Consensus 20 G~~ia~~l~~~G~~V~~~~r~ 40 (267)
T 2gdz_A 20 GRAFAEALLLKGAKVALVDWN 40 (267)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 467899999999999887643
No 325
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=20.11 E-value=78 Score=22.97 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCeEEEEeCC
Q 042879 24 LVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 24 ~l~La~~La~~G~~Vt~~t~~ 44 (189)
=.+++++|+++|++|.++.-.
T Consensus 20 G~~~a~~l~~~G~~V~~~~r~ 40 (244)
T 3d3w_A 20 GRGTVQALHATGARVVAVSRT 40 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999999887643
No 326
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=20.09 E-value=87 Score=24.71 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=19.8
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEeCC
Q 042879 19 GHMIPLVDMAKLFGSRGVKTTVITTP 44 (189)
Q Consensus 19 GH~~P~l~La~~La~~G~~Vt~~t~~ 44 (189)
||+.|++. .++|.+.||++.++...
T Consensus 50 Gh~l~l~~-~~~lQ~~g~~~~~~i~D 74 (322)
T 2yxn_A 50 GHLVPLLC-LKRFQQAGHKPVALVGG 74 (322)
T ss_dssp HHHHHHHH-HHHHHHTTCEEEEEECT
T ss_pred HHHHHHHH-HHHHHHcCCcEEEEEcc
Confidence 99998665 55778889999888764
No 327
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=20.03 E-value=54 Score=25.90 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=36.5
Q ss_pred ccEEEEecCCCCcChHHHHHHHHHHhhC--CCeEEEEeCCcchHH
Q 042879 7 KLHIIFFPLMAHGHMIPLVDMAKLFGSR--GVKTTVITTPANATL 49 (189)
Q Consensus 7 ~~hvl~~p~p~~GH~~P~l~La~~La~~--G~~Vt~~t~~~~~~~ 49 (189)
..+|+++-.-+.|-+.-...+.+.|.++ +.+|++++.+.+..-
T Consensus 8 ~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l 52 (349)
T 3tov_A 8 YKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV 52 (349)
T ss_dssp TCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGG
T ss_pred CCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHH
Confidence 4589999999999999999999999876 999999998765543
No 328
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=20.01 E-value=73 Score=23.61 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=21.6
Q ss_pred EEEEecCCCCcChHHHHHHHHHHhhCCCeEEEEeC
Q 042879 9 HIIFFPLMAHGHMIPLVDMAKLFGSRGVKTTVITT 43 (189)
Q Consensus 9 hvl~~p~p~~GH~~P~l~La~~La~~G~~Vt~~t~ 43 (189)
+++++.-.+ |-+ =.+++++|+++|++|.++.-
T Consensus 9 k~vlVTGas-~gI--G~~ia~~l~~~G~~V~~~~r 40 (259)
T 4e6p_A 9 KSALITGSA-RGI--GRAFAEAYVREGATVAIADI 40 (259)
T ss_dssp CEEEEETCS-SHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCC-cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 445555333 322 45789999999999988754
Done!