BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042883
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 141
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 142 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 197
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 198 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 250
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 251 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 467 VFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN 525
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 141
Query: 526 EYIACGSETNEVFVY 540
I GS V ++
Sbjct: 142 NLIVSGSFDESVRIW 156
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 86
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 235
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 236 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 295 QKLQGHTD 302
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 89
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 90 -------------ISDVAWSSDSNLLVSASDDKTLKI 113
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 125
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 126 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 181
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 182 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 234
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 235 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 127 LIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 219
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 220 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 279 QKLQGHTD 286
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 73
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 74 -------------ISDVAWSSDSNLLVSASDDKTLKI 97
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 143
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 144 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 199
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 200 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 252
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 253 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 467 VFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN 525
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 143
Query: 526 EYIACGSETNEVFVY 540
I GS V ++
Sbjct: 144 NLIVSGSFDESVRIW 158
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 88
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 237
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 238 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 297 QKLQGHTD 304
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 91
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 92 -------------ISDVAWSSDSNLLVSASDDKTLKI 115
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 122
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 123 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 178
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 179 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTN 514
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 111
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 216
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 217 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 276 QKLQGHTD 283
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 71 -------------ISDVAWSSDSNLLVSASDDKTLKI 94
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 124
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 125 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 180
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 181 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 233
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 234 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 126 LIVSGSFDESVRIW 139
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 69
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 218
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 219 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 278 QKLQGHTD 285
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 72
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 73 -------------ISDVAWSSDSNLLVSASDDKTLKI 96
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 122
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 123 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 178
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 179 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 124 LIVSGSFDESVRIW 137
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 216
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 217 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 276 QKLQGHTD 283
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 71 -------------ISDVAWSSDSNLLVSASDDKTLKI 94
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 125
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 126 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 181
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 182 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 234
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 235 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 127 LIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 219
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 220 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 279 QKLQGHTD 286
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 73
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 74 -------------ISDVAWSSDSNLLVSASDDKTLKI 97
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 125
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 126 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 181
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 182 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 234
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 235 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 127 LIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 219
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 220 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 279 QKLQGHTD 286
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 73
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 74 -------------ISDVAWSSDSNLLVSASDDKTLKI 97
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 118
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 119 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 174
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 175 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 227
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 228 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 120 LIVSGSFDESVRIW 133
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 212
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 213 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 272 QKLQGHTD 279
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 66
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 67 -------------ISDVAWSSDSNLLVSASDDKTLKI 90
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 120
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 121 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 176
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 177 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 229
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 230 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 122 LIVSGSFDESVRIW 135
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 65
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 214
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 215 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 274 QKLQGHTD 281
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 68
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 69 -------------ISDVAWSSDSNLLVSASDDKTLKI 92
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 119
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 120 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 175
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 176 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 121 LIVSGSFDESVRIW 134
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 213
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 214 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 273 QKLQGHTD 280
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 67
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 68 -------------ISDVAWSSDSNLLVSASDDKTLKI 91
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 122
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 123 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 178
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 179 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 124 LIVSGSFDESVRIW 137
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 216
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 217 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 276 QKLQGHTD 283
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LA++S D +++W + T GH
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 71 -------------ISDVAWSSDSNLLVSASDDKTLKI 94
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 115
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 116 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 171
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 172 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 224
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 225 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 117 LIVSGSFDESVRIW 130
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 60
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 209
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 210 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 269 QKLQGHTD 276
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 63
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 64 -------------ISDVAWSSDSNLLVSASDDKTLKI 87
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 119
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 120 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 175
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 176 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 121 LIVSGSFDESVRIW 134
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 213
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 214 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 273 QKLQGHTD 280
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 67
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 68 -------------ISDVAWSSDSNLLVSASDDKTLKI 91
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 136
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + + H +V F+ + S++VS S D C++
Sbjct: 137 -NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 192
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 193 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 245
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 246 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 467 VFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN 525
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 136
Query: 526 EYIACGSETNEVFVY 540
I GS V ++
Sbjct: 137 NLIVSGSFDESVRIW 151
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 81
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 230
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 231 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 290 QKLQGHTD 297
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 84
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 85 -------------ISDVAWSSDSNLLVSASDDKTLKI 108
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 122
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + H +V F+ + S++VS S D C++
Sbjct: 123 -NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 178
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D++L+LWD + L
Sbjct: 179 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 124 LIVSGSFDESVRIW 137
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 465 LHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
+ GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 216
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 217 NTLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 276 QKLQGHTD 283
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPL-HTFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 71 -------------ISDVAWSSDSNLLVSASDDKTLKI 94
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYT 390
IS + + D L SA + +KI++ SS + + S + C ++N +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSS--------GKCLKTLKGHSNYVFCCNFNPQS 122
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGS 448
NLI S +D V IWDV T + H +V F+ + S++VS S D C++
Sbjct: 123 -NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI-- 178
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
+D + + + VS+VKF N + + +A+ D+ L+LWD + L
Sbjct: 179 -------WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK 231
Query: 508 TFRGHTNEKN--FVGLTV-NNEYIACGSETNEVFVYH 541
T+ GH NEK F +V ++I GSE N V++++
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
+GHK +S V + S+ N L SAS D +L++WDV L T +GH+N +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 527 YIACGSETNEVFVY 540
I GS V ++
Sbjct: 124 LIVSGSFDESVRIW 137
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 465 LHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
+ GH KAVS VKF N E LAS+S D +++W + T GH
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSAD 450
+LI SS YDG+ IWD + Q + + + S V FS +L + + D
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--------TLD 216
Query: 451 HHIHYYDLRNISQPLHVFNGHK--KAVSYVKF--LSNNELASASTDSSLRLWDVKENLPL 506
+ + +D + L + GHK K + F + S S D+ + +W+++ +
Sbjct: 217 NDLKLWDYSK-GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 507 HTFRGHTN 514
+GHT+
Sbjct: 276 QKLQGHTD 283
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 500 VKENLPL-HTFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHKAISKPAASHRFGS 555
VK N L T GHT + V + N E++A S + + Y K + H+ G
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592
IS V W SDS +++A+ +K+
Sbjct: 71 -------------ISDVAWSSDSNLLVSASDDKTLKI 94
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 388 KYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG 447
+Y + S YD +V +WD T + + H R +S+ F + +VSGS
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGS------ 296
Query: 448 SADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLH 507
D I +D+ +H GH+ S ++ L +N L S + DS++++WD+K L
Sbjct: 297 -LDTSIRVWDVET-GNCIHTLTGHQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCLQ 353
Query: 508 TFRGHTNEKNFVG-LTVNNEYIACGSETNEVFVY 540
T +G ++ V L N ++ S+ V ++
Sbjct: 354 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
++CL ++ N I S D + +W T + + H WS S ++++SG
Sbjct: 122 ITCL---QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISG 175
Query: 441 SDD--CKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLW 498
S D KV +A+ + +H GH V + L + S S D++LR+W
Sbjct: 176 STDRTLKVWNAE----------TGECIHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVW 224
Query: 499 DVKENLPLHTFRGH 512
D++ LH GH
Sbjct: 225 DIETGQCLHVLMGH 238
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453
+ S D + +WD+ T Q + H V + + +VSG+ D V D
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWD--- 265
Query: 454 HYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHT 513
LH GH V ++F + S S D+S+R+WDV+ +HT GH
Sbjct: 266 -----PETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Query: 514 NEKNFVGLTVNNEYIACGSETNEVFVY 540
+ + G+ + + + G+ + V ++
Sbjct: 320 SLTS--GMELKDNILVSGNADSTVKIW 344
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 437 LVSGSDD--CKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSS 494
+VSGSDD KV SA + L GH V + + +N + S STD +
Sbjct: 132 IVSGSDDNTLKVWSA----------VTGKCLRTLVGHTGGV-WSSQMRDNIIISGSTDRT 180
Query: 495 LRLWDVKENLPLHTFRGHTN 514
L++W+ + +HT GHT+
Sbjct: 181 LKVWNAETGECIHTLYGHTS 200
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 467 VFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTN 514
V GH V N + S S D++L++W L T GHT
Sbjct: 113 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV 414
+S ++CL +NK N + +S DG V +WD+ T + +
Sbjct: 362 QSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFI 395
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 27/218 (12%)
Query: 346 SAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405
SA I +++ S+V E + V + + + +SW+ ++L S D + I
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMI 254
Query: 406 WDV---TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462
WD TS+ + H + F+ +L +GS AD + +DLRN+
Sbjct: 255 WDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS-------ADKTVALWDLRNLK 307
Query: 463 QPLHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLWDV----KENLP----------L 506
LH F HK + V++ +NE LAS+ TD L +WD+ +E P L
Sbjct: 308 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELL 367
Query: 507 HTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKA 543
GHT + + N ++ C SE N + V+ A
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTT---SQSVME----YEEHEKRAWSVDFSCTEPSM 436
LSWN + S+ D + +WD++ V++ + H V + S+
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 437 LVSGSDDCKVGSADHHIHYYDLR--NISQPLHVFNGHKKAVSYVKFLSNNE--LASASTD 492
S +DD K + +D R N S+P H + H V+ + F +E LA+ S D
Sbjct: 243 FGSVADDQK-------LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 493 SSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535
++ LWD++ L LH+F H +E V + +NE I S T+
Sbjct: 296 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-SVMEYEEHEKRAWSVDFSCTEPSML 437
++++CLS+N Y++ ++A+ D V +WD+ + + +E H+ + V +S ++L
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 333
Query: 438 VSGSDDCKVGSADHHIHYYDLRNISQP-------------LHVFNGHKKAVSYVKFLSNN 484
S D ++ +DL I + L + GH +S + N
Sbjct: 334 ASSG-------TDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386
Query: 485 E--LASASTDSSLRLWDVKENL 504
+ S S D+ +++W + EN+
Sbjct: 387 PWVICSVSEDNIMQVWQMAENI 408
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 343 LFASAGVSRRIKIFEFSSVVNE--PRDVHYPMVEM-----PTRSKLSCLSWNKYTKNLIA 395
+ AS+G RR+ +++ S + E P D E+ +K+S SWN +I
Sbjct: 332 ILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 391
Query: 396 SSDYDGIVTIW 406
S D I+ +W
Sbjct: 392 SVSEDNIMQVW 402
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 337 FDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK---LSCLSWNKYTKNL 393
F + + A G+ IF SS + RD + P+ + T K SC L
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQAD--RDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEE-----HEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448
I S D +WDVTT Q + + H S+ + +M +SGS
Sbjct: 174 ITGSG-DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS------- 225
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLH 507
D + +DLR S+ + ++GH+ ++ VKF + + + S D + RL+D++ L
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Query: 508 TF 509
+
Sbjct: 286 VY 287
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 21/193 (10%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
K+ L W KN I S+ DG + +W+ TSQ + H F+ S+
Sbjct: 67 GKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 439 SGSDD-CKVGSADHHIHYYDLRNISQPL-HVFNGHKKAVSYVKFLSNNE--LASASTDSS 494
G D C + ++ R+ + P+ V GHK S +++ + E L + S D +
Sbjct: 126 GGLDSACSI----FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 495 LRLWDVKENLPLHTF-----RGHTNEKNFVGLTVN----NEYIACGSETNEVFVYHKAIS 545
LWDV + F GHT + + L++N N +I+ GS V ++ I+
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHT--ADVLSLSINSLNANMFIS-GSCDTTVRLWDLRIT 238
Query: 546 KPAASHRFGSDAD 558
A G + D
Sbjct: 239 SRAVRTYHGHEGD 251
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDV---TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
++W+ ++L S D + IWD TS+ + H + F+ +L +G
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLW 498
S AD + +DLRN+ LH F HK + V++ +NE LAS+ TD L +W
Sbjct: 301 S-------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 499 DVK-----------ENLP---LHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKA 543
D+ E+ P L GHT + + N +I C SE N + V+ A
Sbjct: 354 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTTS---QSVME----YEEHEKRAWSVDFSCTEPSM 436
LSWN + S+ D + +WD+ + V++ + H V + S+
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 437 LVSGSDDCKVGSADHHIHYYDLR--NISQPLHVFNGHKKAVSYVKFLSNNE--LASASTD 492
S +DD K + +D R N S+P H + H V+ + F +E LA+ S D
Sbjct: 251 FGSVADDQK-------LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 493 SSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535
++ LWD++ L LH+F H +E V + +NE I S T+
Sbjct: 304 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-SVMEYEEHEKRAWSVDFSCTEPSML 437
++++CLS+N Y++ ++A+ D V +WD+ + + +E H+ + V +S ++L
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 341
Query: 438 VSGSDDCKVGSADHHIHYYDLRNISQP-------------LHVFNGHKKAVSYVKFLSNN 484
S D +H +DL I + L + GH +S + N
Sbjct: 342 ASSG-------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 485 E--LASASTDSSLRLWDVKENL 504
+ S S D+ +++W + EN+
Sbjct: 395 PWIICSVSEDNIMQVWQMAENV 416
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 340 DDELFASAGVSRRIKIFEFSSVVNE---------PRDVHYPMVEMPTRSKLSCLSWNKYT 390
++ + AS+G RR+ +++ S + E P ++ + + +K+S SWN
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFSWNPNE 394
Query: 391 KNLIASSDYDGIVTIWDV 408
+I S D I+ +W +
Sbjct: 395 PWIICSVSEDNIMQVWQM 412
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDV---TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
++W+ ++L S D + IWD TS+ + H + F+ +L +G
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLW 498
S AD + +DLRN+ LH F HK + V++ +NE LAS+ TD L +W
Sbjct: 297 S-------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 499 DVK-----------ENLP---LHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKA 543
D+ E+ P L GHT + + N +I C SE N + V+ A
Sbjct: 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTTS---QSVME----YEEHEKRAWSVDFSCTEPSM 436
LSWN + S+ D + +WD+ + V++ + H V + S+
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 437 LVSGSDDCKVGSADHHIHYYDLR--NISQPLHVFNGHKKAVSYVKFLSNNE--LASASTD 492
S +DD K + +D R N S+P H + H V+ + F +E LA+ S D
Sbjct: 247 FGSVADDQK-------LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 493 SSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535
++ LWD++ L LH+F H +E V + +NE I S T+
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-SVMEYEEHEKRAWSVDFSCTEPSML 437
++++CLS+N Y++ ++A+ D V +WD+ + + +E H+ + V +S ++L
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337
Query: 438 VSGSDDCKVGSADHHIHYYDLRNISQP-------------LHVFNGHKKAVSYVKFLSNN 484
S D +H +DL I + L + GH +S + N
Sbjct: 338 ASSG-------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 485 E--LASASTDSSLRLWDVKENL 504
+ S S D+ +++W + EN+
Sbjct: 391 PWIICSVSEDNIMQVWQMAENV 412
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 340 DDELFASAGVSRRIKIFEFSSVVNE---------PRDVHYPMVEMPTRSKLSCLSWNKYT 390
++ + AS+G RR+ +++ S + E P ++ + + +K+S SWN
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFSWNPNE 390
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRA 424
+I S D I+ +W + +++V EE E A
Sbjct: 391 PWIICSVSEDNIMQVWQM--AENVYNDEEPEIPA 422
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDV---TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
++W+ ++L S D + IWD TS+ + H + F+ +L +G
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLW 498
S AD + +DLRN+ LH F HK + V++ +NE LAS+ TD L +W
Sbjct: 299 S-------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 499 DVK-----------ENLP---LHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKA 543
D+ E+ P L GHT + + N +I C SE N + V+ A
Sbjct: 352 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTTS---QSVME----YEEHEKRAWSVDFSCTEPSM 436
LSWN + S+ D + +WD+ + V++ + H V + S+
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 437 LVSGSDDCKVGSADHHIHYYDLR--NISQPLHVFNGHKKAVSYVKFLSNNE--LASASTD 492
S +DD K + +D R N S+P H + H V+ + F +E LA+ S D
Sbjct: 249 FGSVADDQK-------LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 493 SSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535
++ LWD++ L LH+F H +E V + +NE I S T+
Sbjct: 302 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-SVMEYEEHEKRAWSVDFSCTEPSML 437
++++CLS+N Y++ ++A+ D V +WD+ + + +E H+ + V +S ++L
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 339
Query: 438 VSGSDDCKVGSADHHIHYYDLRNISQP-------------LHVFNGHKKAVSYVKFLSNN 484
S D +H +DL I + L + GH +S + N
Sbjct: 340 ASSG-------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 485 E--LASASTDSSLRLWDVKENL 504
+ S S D+ +++W + EN+
Sbjct: 393 PWIICSVSEDNIMQVWQMAENV 414
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 340 DDELFASAGVSRRIKIFEFSSVVNE---------PRDVHYPMVEMPTRSKLSCLSWNKYT 390
++ + AS+G RR+ +++ S + E P ++ + + +K+S SWN
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFSWNPNE 392
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRA 424
+I S D I+ +W + +++V EE E A
Sbjct: 393 PWIICSVSEDNIMQVWQM--AENVYNDEEPEIPA 424
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N++ S YD + +WDV + + H R +S + C S D
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR--------CISASMDT 332
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG 511
I +DL N + ++ GH V ++ LS+ L SA+ D S+R WD + ++
Sbjct: 333 TIRIWDLEN-GELMYTLQGHTALVGLLR-LSDKFLVSAAADGSIRGWDANDYSRKFSYH- 389
Query: 512 HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560
HTN V++ + GSE N+ +Y+ K ++ DAD +
Sbjct: 390 HTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANIL-KDADQI 436
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 447 GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPL 506
G+ D I YD N + L +GH V +K+ L S STD ++R+WD+K+
Sbjct: 138 GADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 196
Query: 507 HTFRGHTNEKNFVGLT--VNNEYIACGSETNEVFVY 540
H F GH + + + N +YI GS N + V+
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
S ++CL ++ N + + D ++ ++D + +++ H+ W++ ++ +LV
Sbjct: 123 SVITCL---QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILV 177
Query: 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV---SYVKFLSNNELASASTDSSL 495
S GS D + +D++ HVF GH V V++ + + + S D++L
Sbjct: 178 S-------GSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 496 RLWDV--KENLPLHT------FRGHTNEKN--FVGL 521
+W + + ++P H HT E+N FVG+
Sbjct: 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 438 VSGSDDCKV-GSADHHIHYYDLRNISQPLHVFNGHKKAV-SYVKFLSNNELASASTDSSL 495
VSG + V GS D+ + +D+ + + L++ +GH + S + SAS D+++
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 496 RLWDVKENLPLHTFRGHT 513
R+WD++ ++T +GHT
Sbjct: 335 RIWDLENGELMYTLQGHT 352
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDV---TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
++W+ ++L S D + IWD TTS+ + H + F+ +L +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLW 498
S AD + +DLRN+ LH F HK + V + +NE LAS+ TD L +W
Sbjct: 295 S-------ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 499 DVK-----------ENLP---LHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKA 543
D+ E+ P L GHT + + N ++ C SE N + ++ A
Sbjct: 348 DLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTTSQSVME-------YEEHEKRAWSVDFSCTEPSM 436
LSWN + S+ D V +WD+ + + H V + S+
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 437 LVSGSDDCKVGSADHHIHYYDLRN--ISQPLHVFNGHKKAVSYVKFLSNNE--LASASTD 492
S +DD K + +D R+ S+P H+ + H V+ + F +E LA+ S D
Sbjct: 245 FGSVADDQK-------LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 493 SSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535
++ LWD++ L LHTF H +E V + +NE I S T+
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 84/179 (46%), Gaps = 29/179 (16%)
Query: 343 LFASAGVSRRIKIFEF-SSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401
LF S +++ I++ S+ ++P +V+ T ++++CLS+N Y++ ++A+ D
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSH----LVDAHT-AEVNCLSFNPYSEFILATGSADK 298
Query: 402 IVTIWDVTTSQ-SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN 460
V +WD+ + + +E H+ + V +S ++L S D + ++ +DL
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR-------LNVWDLSK 351
Query: 461 ISQP-------------LHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLWDVKENL 504
I + L + GH +S + N + S S D+ +++W + EN+
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 339 RDDELFASAGVSRRIKIFEFSSVVNE---------PRDVHYPMVEMPTRSKLSCLSWNKY 389
++ + AS+G RR+ +++ S + E P ++ + + +K+S SWN
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF--IHGGHTAKISDFSWNPN 387
Query: 390 TKNLIASSDYDGIVTIWDV 408
+I S D I+ IW +
Sbjct: 388 EPWVICSVSEDNIMQIWQM 406
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 36/205 (17%)
Query: 332 ISSIEFD-RDDELFASAGVSRRIKIFEFSSVVNEPRDVH--YPMVEMPTRSKLSCLSWNK 388
+ +++F+ + D + AS G + I I++ + P + P M + ++ L+WN+
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175
Query: 389 YTKNLIASSDYDGIVTIWDVTTSQSVMEY----------------EEHEKRAWSVDFSCT 432
++ AS+ +IWD+ + V+ E H K + V
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV----- 230
Query: 433 EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKKAVSYVKFLSNNE--LASA 489
+GSD+ D I +DLRN + PL N GH+K + + + +E L S+
Sbjct: 231 ---ATATGSDN------DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS 281
Query: 490 STDSSLRLWDVKENLPLHTFRGHTN 514
D+++ LW+ + L F N
Sbjct: 282 GRDNTVLLWNPESAEQLSQFPARGN 306
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 26/227 (11%)
Query: 321 RHGDLFHA----ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP 376
R+G L ++ + + F D + ASA + +K++ + + + H V
Sbjct: 45 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 104
Query: 377 TRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSM 436
S IAS+ D V +W+ Q + H W V FS +
Sbjct: 105 AFSP---------DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQT 153
Query: 437 LVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSL 495
+ S SDD V ++ RN Q L GH +V V F + + +ASAS D ++
Sbjct: 154 IASASDDKTV-------KLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 496 RLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542
+LW+ L L T GH++ V + + + IA S+ V ++++
Sbjct: 205 KLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 26/227 (11%)
Query: 321 RHGDLFHA----ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP 376
R+G L ++ + + F D + ASA + +K++ + + + H V
Sbjct: 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGV 268
Query: 377 TRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSM 436
+ IAS+ D V +W+ Q + H W V FS +
Sbjct: 269 AF---------RPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQT 317
Query: 437 LVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSL 495
+ S SDD V ++ RN Q L GH +V V F + + +ASAS D ++
Sbjct: 318 IASASDDKTV-------KLWN-RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 496 RLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542
+LW+ L L T GH++ V + + + IA S+ V ++++
Sbjct: 369 KLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453
IAS+ D V +W+ Q + H W V FS + + S SDD V
Sbjct: 31 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTV------- 81
Query: 454 HYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
++ RN Q L GH +V V F + + +ASAS D +++LW+ L L T GH
Sbjct: 82 KLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH 138
Query: 513 TNEKNFVGLTVNNEYIACGSETNEVFVYHK 542
++ V + + + IA S+ V ++++
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNR 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453
IAS+ D V +W+ Q + H V FS + + S SDD V
Sbjct: 195 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV------- 245
Query: 454 HYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
++ RN Q L GH +V+ V F + + +ASAS D +++LW+ L L T GH
Sbjct: 246 KLWN-RN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH 302
Query: 513 TNEKNFVGLTVNNEYIACGSETNEVFVYHK 542
++ V + + + IA S+ V ++++
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNR 332
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Query: 321 RHGDLFHA----ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP 376
R+G L ++ + + F DD+ ASA + +K++ + + + H V
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 377 TRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSM 436
S IAS+ D V +W+ Q + H V FS +
Sbjct: 474 AFSP---------DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQT 522
Query: 437 LVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSL 495
+ S SDD V ++ RN Q L GH +V V F + + +ASAS+D ++
Sbjct: 523 IASASDDKTV-------KLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
Query: 496 RLWD 499
+LW+
Sbjct: 574 KLWN 577
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 471 HKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIA 529
H +V V F + + +ASAS D +++LW+ L L T GH++ V + + + IA
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 530 CGSETNEVFVYHK 542
S+ V ++++
Sbjct: 74 SASDDKTVKLWNR 86
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 27/180 (15%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDV---TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
++W+ ++L S D + IWD TTS+ + H + F+ +L +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLW 498
S AD + +DLRN+ LH F HK + V + +NE LAS+ TD L +W
Sbjct: 295 S-------ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 499 DVK-----------ENLP---LHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKA 543
D+ E+ P L GHT + + N ++ C SE N ++ A
Sbjct: 348 DLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXA 407
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTTSQSVME-------YEEHEKRAWSVDFSCTEPSM 436
LSWN + S+ D V +WD+ + + H V + S+
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 437 LVSGSDDCKVGSADHHIHYYDLRN--ISQPLHVFNGHKKAVSYVKFLSNNE--LASASTD 492
S +DD K + +D R+ S+P H+ + H V+ + F +E LA+ S D
Sbjct: 245 FGSVADDQK-------LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 493 SSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535
++ LWD++ L LHTF H +E V + +NE I S T+
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 343 LFASAGVSRRIKIFEF-SSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401
LF S +++ I++ S+ ++P +V+ T ++++CLS+N Y++ ++A+ D
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSH----LVDAHT-AEVNCLSFNPYSEFILATGSADK 298
Query: 402 IVTIWDVTTSQ-SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN 460
V +WD+ + + +E H+ + V +S ++L S D + ++ +DL
Sbjct: 299 TVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR-------LNVWDLSK 351
Query: 461 ISQP-------------LHVFNGHKKAVSYVKFLSNNE--LASASTDSSLRLWDVKENL 504
I + L + GH +S + N + S S D+ ++W EN+
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 339 RDDELFASAGVSRRIKIFEFSSVVNE---------PRDVHYPMVEMPTRSKLSCLSWNKY 389
++ + AS+G RR+ +++ S + E P ++ + + +K+S SWN
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF--IHGGHTAKISDFSWNPN 387
Query: 390 TKNLIASSDYDGIVTIW 406
+I S D I IW
Sbjct: 388 EPWVICSVSEDNIXQIW 404
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N++ S YD + +WDV + + H R +S + C S D
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR--------CISASXDT 332
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG 511
I +DL N + + GH V ++ LS+ L SA+ D S+R WD + ++
Sbjct: 333 TIRIWDLEN-GELXYTLQGHTALVGLLR-LSDKFLVSAAADGSIRGWDANDYSRKFSYH- 389
Query: 512 HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560
HTN V++ + GSE N+ +Y+ K ++ DAD +
Sbjct: 390 HTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANIL-KDADQI 436
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 447 GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPL 506
G+ D I YD N + L +GH V +K+ L S STD ++R+WD+K+
Sbjct: 138 GADDKXIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 196
Query: 507 HTFRGHTNEKNFVGLT--VNNEYIACGSETNEVFVY 540
H F GH + + + N +YI GS N + V+
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 26/156 (16%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
S ++CL ++ N + + D + ++D + +++ H+ W++ ++ +LV
Sbjct: 123 SVITCL---QFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILV 177
Query: 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV---SYVKFLSNNELASASTDSSL 495
S GS D + +D++ HVF GH V V++ + + + S D++L
Sbjct: 178 S-------GSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 496 RLWDV--KENLPLHT------FRGHTNEKN--FVGL 521
+W + + ++P H HT E+N FVG+
Sbjct: 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 438 VSGSDDCKV-GSADHHIHYYDLRNISQPLHVFNGHKKAV-SYVKFLSNNELASASTDSSL 495
VSG + V GS D+ + +D+ + L++ +GH + S + SAS D+++
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQ-XKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 496 RLWDVKENLPLHTFRGHT 513
R+WD++ +T +GHT
Sbjct: 335 RIWDLENGELXYTLQGHT 352
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S+ +D + +WDV T ++ + H+ SVD + SM++S GS D I
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIIS-------GSRDKTIKV 127
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE-------LASASTDSSLRLWDVKENLPLHT 508
+ ++ Q L GH VS V+ + N + + SA D ++ W++ +
Sbjct: 128 WTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
F GH + N + + + IA + E+ +++ A K
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477
E H S+ S +P++L+S S D + S D + P+ F GH V
Sbjct: 8 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQD 64
Query: 478 VKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE 536
++ A SAS D +LRLWDV F GH ++ V + I GS
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 124
Query: 537 VFVY 540
+ V+
Sbjct: 125 IKVW 128
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 22/187 (11%)
Query: 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDV-HYPMVEMPTR 378
L H D ++ + + D D SAG + +K + + E + H + T
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 198
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
S LIAS+ DG + +W++ +++ ++ +S+ FS +
Sbjct: 199 SP---------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAA 248
Query: 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-----AVSYVKFLSNNELASASTDS 493
+ + KV S D DLR F G+ K AVS L + TD+
Sbjct: 249 ATATGIKVFSLDPQYLVDDLR------PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 302
Query: 494 SLRLWDV 500
+R+W V
Sbjct: 303 VIRVWQV 309
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S+ +D + +WDV T ++ + H+ SVD + SM++S GS D I
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIIS-------GSRDKTIKV 133
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE-------LASASTDSSLRLWDVKENLPLHT 508
+ ++ Q L GH VS V+ + N + + SA D ++ W++ +
Sbjct: 134 WTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
F GH + N + + + IA + E+ +++ A K
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477
E H S+ S +P++L+S S D + S D + P+ F GH V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQD 70
Query: 478 VKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE 536
++ A SAS D +LRLWDV F GH ++ V + I GS
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 537 VFVY 540
+ V+
Sbjct: 131 IKVW 134
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDV-HYPMVEMPTR 378
L H D ++ + + D D SAG + +K + + E + H + T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
S LIAS+ DG + +W++ +++ ++ +S+ FS +
Sbjct: 205 SP---------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAA 254
Query: 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-----AVSYVKFLSNNELASASTDS 493
+ + KV S D DLR F G+ K AVS L + TD+
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR------PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 494 SLRLW 498
+R+W
Sbjct: 309 VIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S+ +D + +WDV T ++ + H+ SVD + SM++S GS D I
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIIS-------GSRDKTIKV 133
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE-------LASASTDSSLRLWDVKENLPLHT 508
+ ++ Q L GH VS V+ + N + + SA D ++ W++ +
Sbjct: 134 WTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
F GH + N + + + IA + E+ +++ A K
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477
E H S+ S +P++L+S S D + S D + P+ F GH V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQD 70
Query: 478 VKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE 536
++ A SAS D +LRLWDV F GH ++ V + I GS
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 537 VFVY 540
+ V+
Sbjct: 131 IKVW 134
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 20/186 (10%)
Query: 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRS 379
L H D ++ + + D D SAG + +K + + E + + S
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH-------NS 197
Query: 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVS 439
++ L+ LIAS+ DG + +W++ +++ ++ +S+ FS + +
Sbjct: 198 NINTLT-ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAA 255
Query: 440 GSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-----AVSYVKFLSNNELASASTDSS 494
+ KV S D DLR F G+ K AVS L + TD+
Sbjct: 256 TATGIKVFSLDPQYLVDDLR------PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 495 LRLWDV 500
+R+W V
Sbjct: 310 IRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S+ +D + +WDV T ++ + H+ SVD + SM++S GS D I
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIIS-------GSRDKTIKV 133
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE-------LASASTDSSLRLWDVKENLPLHT 508
+ ++ Q L GH VS V+ + N + + SA D ++ W++ +
Sbjct: 134 WTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
F GH + N + + + IA + E+ +++ A K
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477
E H S+ S +P++L+S S D + S D + P+ F GH V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQD 70
Query: 478 VKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE 536
++ A SAS D +LRLWDV F GH ++ V + I GS
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 537 VFVY 540
+ V+
Sbjct: 131 IKVW 134
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 20/186 (10%)
Query: 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRS 379
L H D ++ + + D D SAG + +K + + E + + S
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH-------NS 197
Query: 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVS 439
++ L+ LIAS+ DG + +W++ +++ ++ +S+ FS + +
Sbjct: 198 NINTLT-ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAA 255
Query: 440 GSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-----AVSYVKFLSNNELASASTDSS 494
+ KV S D DLR F G+ AVS L + TD+
Sbjct: 256 TATGIKVFSLDPQYLVDDLR------PEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 495 LRLWDV 500
+R+W V
Sbjct: 310 IRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S+ +D + +WDV T ++ + H+ SVD + SM++S GS D I
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIIS-------GSRDKTIKV 133
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE-------LASASTDSSLRLWDVKENLPLHT 508
+ ++ Q L GH VS V+ + N + + SA D ++ W++ +
Sbjct: 134 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
F GH + N + + + IA + E+ +++ A K
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477
E H S+ S +P++L+S S D + S D + P+ F GH V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQD 70
Query: 478 VKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE 536
++ A SAS D +LRLWDV F GH ++ V + I GS
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 537 VFVY 540
+ V+
Sbjct: 131 IKVW 134
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 22/187 (11%)
Query: 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDV-HYPMVEMPTR 378
L H D ++ + + D D SAG + +K + + E + H + T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
S LIAS+ DG + +W++ +++ ++ +S+ FS +
Sbjct: 205 SP---------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAA 254
Query: 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-----AVSYVKFLSNNELASASTDS 493
+ + KV S D DLR F G+ K AVS L + TD+
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR------PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 494 SLRLWDV 500
+R+W V
Sbjct: 309 VIRVWQV 315
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD----------DCK 445
SS +D + +WD+ T + + H+ +SV FS +L +G++ +CK
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 446 VGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLP 505
SA+ H D + + + K + + AS D L++W+ +
Sbjct: 153 FSSAEKENHS-DWVSCVRYSPIMKSANKVQPFAPYF-----ASVGWDGRLKVWNTNFQI- 205
Query: 506 LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540
+TF+ H + N + ++ N +YIA G + ++ ++
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 447 GSADHHIHYYDLRNISQ------PLHVFNGHKKAVSYVKFLSNNELA-SASTDSSLRLWD 499
GS D + + L Q P GH VS + N A S+S D +LRLWD
Sbjct: 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104
Query: 500 VKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541
++ F GH +E V + +N I E+ +++
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 28/180 (15%)
Query: 332 ISSIEFDRDDELFASAGVSRRIKIF------EFSSVVNEPRD-----VHYPMVEMPTRSK 380
+ S+ F D+ SAG R IK++ +FSS E V Y + M + +K
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI-MKSANK 179
Query: 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
+ + AS +DG + +W+ T Q ++ HE +V+ P+
Sbjct: 180 VQPFA------PYFASVGWDGRLKVWN-TNFQIRYTFKAHES---NVNHLSISPN----- 224
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDV 500
G D + +D+ N++ P F+ ++ + F + + TD ++++++
Sbjct: 225 GKYIATGGKDKKLLIWDILNLTYPQREFDA-GSTINQIAFNPKLQWVAVGTDQGVKIFNL 283
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 58/261 (22%)
Query: 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCT 432
++ T +++SC + + + IA D +G + I ++ ++ +H+K W + F+
Sbjct: 962 IDYLTEAQVSCCCLSPHLQ-YIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 433 EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTD 492
E + L+S SDD ++ + + GH++ V + L N+ L S S D
Sbjct: 1021 EKT-LISSSDDAEIQVWNWQL---------DKCIFLRGHQETVKDFRLLKNSRLLSWSFD 1070
Query: 493 SSLRLWDV----KEN--------------------------------------LPLHTFR 510
++++W++ KE LPLH R
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 511 GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFIS 570
GH +V++ +A G + E+ +++ +S H ++ G + ++
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWN--VSNGELLHLCAPLSEEGAATHGGW-VT 1187
Query: 571 AVCWKSDSPTMLTANRKGAIK 591
+C+ D +++A G IK
Sbjct: 1188 DLCFSPDGKMLISAG--GYIK 1206
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453
IAS D + ++ T + ++E + HE FS T+ + + S D KV +
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFS-TDDRFIATCSVDKKVKIWN--- 691
Query: 454 HYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLPLHTFR 510
+ +H ++ H + V+ F +++ LA+ S+D L+LWD+ + +T
Sbjct: 692 -----SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF 746
Query: 511 GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAS---HRFGSDADHVDDDMGSY 567
GHTN N + +++ +A S + ++ + S +F + + +DM
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM-EV 805
Query: 568 FISAVCWKSDSPTMLTANR 586
+ W +D ++ A +
Sbjct: 806 IVKCCSWSADGARIMVAAK 824
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 23/188 (12%)
Query: 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVH----YPMVEMPTRSK 380
+F N ++ F DD+L AS +K+++ +S NE + ++ + +E P
Sbjct: 745 MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA-NERKSINVKQFFLNLEDPQEDM 803
Query: 381 ---LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSM 436
+ C SW+ ++ ++ + ++D+ TS + E + H DFS
Sbjct: 804 EVIVKCCSWSADGARIMVAAK--NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLA 861
Query: 437 LVSGSDDC-KVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSS 494
+V+ S C ++ + D D R GH V V F + + ++S D +
Sbjct: 862 VVALSQYCVELWNTDSRSKVADCR----------GHLSWVHGVMFSPDGSSFLTSSDDQT 911
Query: 495 LRLWDVKE 502
+RLW+ K+
Sbjct: 912 IRLWETKK 919
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 393 LIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV------SGSDDCKV 446
L+AS DG + +WD T++ E + + + ++ + M V +D ++
Sbjct: 763 LLASCSADGTLKLWDATSAN---ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARI 819
Query: 447 G-SADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELA-SASTDSSLRLWDVKENL 504
+A + I +D+ + GH + Y F N LA A + + LW+
Sbjct: 820 MVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS 879
Query: 505 PLHTFRGH 512
+ RGH
Sbjct: 880 KVADCRGH 887
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNK 388
++ + ++ F R E+ + + +KI++F NEP + + R L C+ +
Sbjct: 191 SSTLHAVTFLRTPEILTVNSIGQ-LKIWDFRQQGNEPSQI---LSLTGDRVPLHCVDRHP 246
Query: 389 YTKNLIASSDYDGIVTIWDV-TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG 447
++++A+ DG+++IWDV + V + HE W V F + P L + S+D +
Sbjct: 247 NQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW 306
Query: 448 SAD 450
D
Sbjct: 307 HWD 309
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 344 FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403
A G+ + ++ + NE V M T +C N + L AS D G
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD--GTC 178
Query: 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEP-SMLVSGSDDCKVGSADHHIHYYDLRNIS 462
+WDV + Q + + H +D + +E + VS G D +D+R+
Sbjct: 179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS-------GGCDKKAMVWDMRS-G 230
Query: 463 QPLHVFNGHKKAVSYVKFL-SNNELASASTDSSLRLWDVKEN 503
Q + F H+ V+ V++ S + AS S D++ RL+D++ +
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
+K+ C+ W K K I SS DG V +WD T+ +EH +V CT
Sbjct: 65 NKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTN-----KEH-----AVTMPCTWVMACA 113
Query: 439 SGSDDCKV--GSADHHIHYYDL-----RNISQPLHVFNGHKKAVSYVKFL-SNNELASAS 490
C + G D+ Y L N++ H +S F S+ ++ +AS
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 491 TDSSLRLWDVKENLPLHTFRGH 512
D + LWDV+ L +F GH
Sbjct: 174 GDGTCALWDVESGQLLQSFHGH 195
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPS--MLVSGSDD--CK 445
T N S D +WD+ + Q V +E HE SV + PS SGSDD C+
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY---YPSGDAFASGSDDATCR 265
Query: 446 VGS--ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKF-LSNNELASASTDSSLRLWDVKE 502
+ AD + Y +I +F S V F LS L + D ++ +WDV +
Sbjct: 266 LYDLRADREVAIYSKESI-----IF-----GASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540
+ GH N + + ++ + GS + + V+
Sbjct: 316 GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 448 SADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFL---SNNELASASTDSSLRLWDVKENL 504
S D +D+ + Q L F+GH V + + N S D +WD++
Sbjct: 173 SGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231
Query: 505 PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540
+ F H ++ N V + + A GS+ +Y
Sbjct: 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 124/335 (37%), Gaps = 65/335 (19%)
Query: 258 AQLNDLKEYYLQKRRQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTQYSRLRVI 317
Q D KE+ + + H+ V+R +HP SV+ + ++ + ++V
Sbjct: 86 GQKRDPKEWIPRPPEKYALSGHRS------PVTRVIFHPVF----SVMVSASEDATIKVW 135
Query: 318 AELRHGD----LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSS------------- 360
+ GD L + + I FD +L AS IK+++F
Sbjct: 136 -DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 194
Query: 361 ------------VVNEPRDVHYPMVEMPTRSKLSCLS----WNKYTK-----NLIASSDY 399
+V+ RD M E+ T + + W + + LIAS
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 400 DGIVTIWDVTTSQSVMEYEEH----EKRAWSVDFSCTEPSMLVSGSDDCK---------V 446
D V +W V T + E EH E +W+ + S + S +GS+ K
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE-ATGSETKKSGKPGPFLLS 313
Query: 447 GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLP 505
GS D I +D+ + L GH V V F S + + S + D +LR+WD K
Sbjct: 314 GSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372
Query: 506 LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540
+ T H + + Y+ GS V V+
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S+ +D + +WDV T ++ + H+ SVD + S ++S GS D I
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID-KKASXIIS-------GSRDKTIKV 133
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE-------LASASTDSSLRLWDVKENLPLHT 508
+ ++ Q L GH VS V+ + N + + SA D ++ W++ +
Sbjct: 134 WTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
F GH + N + + + IA + E+ +++ A K
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477
E H S+ S +P++L+S S D + S D + P+ F GH V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT---GDDQKFGVPVRSFKGHSHIVQD 70
Query: 478 VKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE 536
++ A SAS D +LRLWDV F GH ++ V + I GS
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKT 130
Query: 537 VFVY 540
+ V+
Sbjct: 131 IKVW 134
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 22/187 (11%)
Query: 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDV-HYPMVEMPTR 378
L H D ++ + + D D SAG + +K + + E + H + T
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV 438
S LIAS+ DG + +W++ ++ ++ +S+ FS +
Sbjct: 205 SP---------DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPNRYWLAA 254
Query: 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-----AVSYVKFLSNNELASASTDS 493
+ + KV S D DLR F G+ K AVS L + TD+
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR------PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 494 SLRLWDV 500
+R+W V
Sbjct: 309 VIRVWQV 315
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG--SADH 451
IAS D + ++ T + +++ + HE FS SDD + SAD
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS----------SDDSYIATCSADK 686
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLPLHT 508
+ +D + +H ++ H + V+ F + + LA+ S D L+LWD+ + +T
Sbjct: 687 KVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 745
Query: 509 FRGHTNEKNFVGLTVNNEYIA 529
GHTN N + ++E +A
Sbjct: 746 MFGHTNSVNHCRFSPDDELLA 766
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 19/198 (9%)
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450
K LI+SS+ D ++ +W+ T V E DF + S L+S S D V
Sbjct: 1023 KTLISSSE-DSVIQVWNWQTGDYVFLQAHQETVK---DFRLLQDSRLLSWSFDGTV---- 1074
Query: 451 HHIHYYDLRNI--SQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLH 507
+ N+ + F H+ V S+ + +S S D + ++W PLH
Sbjct: 1075 ------KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1128
Query: 508 TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSY 567
+GH +++ +A G + E+ +++ +S H +
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN--VSDGQLLHSCAPISVEEGTATHGG 1186
Query: 568 FISAVCWKSDSPTMLTAN 585
+++ VC+ DS T+++A
Sbjct: 1187 WVTDVCFSPDSKTLVSAG 1204
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 393 LIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVD---FSCTEPSMLV---------SG 440
L+AS DG + +WDV ++ +E+++ +V S +P V S
Sbjct: 764 LLASCSADGTLRLWDVRSA--------NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 815
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELAS-ASTDSSLRLWD 499
D + +A + + +D+ + GH + Y F + LA A + + LW+
Sbjct: 816 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Query: 500 VKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH-KAISKPAA 549
+ L + RGH + + V + + S+ + V+ K + K +A
Sbjct: 876 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 926
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWD 499
GHKKAV +++F ++ + L S+S DS +++W+
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453
+A D DG + I ++ ++ H+K + F+ + L+S S+D +
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT-ADGKTLISSSEDSVI------- 1034
Query: 454 HYYDLRNISQPLHVF-NGHKKAVSYVKFLSNNELASASTDSSLRLWDV 500
+ N +VF H++ V + L ++ L S S D ++++W+V
Sbjct: 1035 ---QVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV 1079
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG--SADH 451
IAS D + ++ T + +++ + HE FS SDD + SAD
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS----------SDDSYIATCSADK 679
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLPLHT 508
+ +D + +H ++ H + V+ F + + LA+ S D L+LWD+ + +T
Sbjct: 680 KVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738
Query: 509 FRGHTNEKNFVGLTVNNEYIA 529
GHTN N + ++E +A
Sbjct: 739 MFGHTNSVNHCRFSPDDELLA 759
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 19/198 (9%)
Query: 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450
K LI+SS+ D ++ +W+ T V E DF + S L+S S D V
Sbjct: 1016 KTLISSSE-DSVIQVWNWQTGDYVFLQAHQETVK---DFRLLQDSRLLSWSFDGTV---- 1067
Query: 451 HHIHYYDLRNI--SQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLH 507
+ N+ + F H+ V S+ + +S S D + ++W PLH
Sbjct: 1068 ------KVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Query: 508 TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSY 567
+GH +++ +A G + E+ +++ +S H +
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN--VSDGQLLHSCAPISVEEGTATHGG 1179
Query: 568 FISAVCWKSDSPTMLTAN 585
+++ VC+ DS T+++A
Sbjct: 1180 WVTDVCFSPDSKTLVSAG 1197
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 393 LIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVD---FSCTEPSMLV---------SG 440
L+AS DG + +WDV ++ +E+++ +V S +P V S
Sbjct: 757 LLASCSADGTLRLWDVRSA--------NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELAS-ASTDSSLRLWD 499
D + +A + + +D+ + GH + Y F + LA A + + LW+
Sbjct: 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Query: 500 VKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH-KAISKPAA 549
+ L + RGH + + V + + S+ + V+ K + K +A
Sbjct: 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 919
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 470 GHKKAVSYVKFLSNNE-LASASTDSSLRLWD 499
GHKKAV +++F ++ + L S+S DS +++W+
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453
+A D DG + I ++ ++ H+K + F+ + L+S S+D +
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT-ADGKTLISSSEDSVI------- 1027
Query: 454 HYYDLRNISQPLHVF-NGHKKAVSYVKFLSNNELASASTDSSLRLWDV 500
+ N +VF H++ V + L ++ L S S D ++++W+V
Sbjct: 1028 ---QVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV 1072
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 12/138 (8%)
Query: 410 TSQSVMEYEEHEKRAWSVDFSCTE--PSMLVSGSDDCKVGSADHHIHY---YDLRNISQP 464
T Q + W + T P M++S S D + I + D N P
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI------IMWKLTRDETNYGIP 55
Query: 465 LHVFNGHKKAVSYVKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTV 523
GH VS V S+ + A S S D +LRLWD+ F GHT + V +
Sbjct: 56 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 524 NNEYIACGSETNEVFVYH 541
+N I GS + +++
Sbjct: 116 DNRQIVSGSRDKTIKLWN 133
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S +DG + +WD+TT + + H K SV FS ++ +VS GS D I
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVS-------GSRDKTIKL 131
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLPLHTFR-G 511
++ + + H + VS V+F N+ + S D +++W++ N L T G
Sbjct: 132 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIG 190
Query: 512 HTNEKNFVGLTVNNEYIACGSETNEVFVY 540
HT N V ++ + A G + + ++
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 12/138 (8%)
Query: 410 TSQSVMEYEEHEKRAWSVDFSCTE--PSMLVSGSDDCKVGSADHHIHY---YDLRNISQP 464
T Q + W + T P M++S S D + I + D N P
Sbjct: 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI------IMWKLTRDETNYGIP 78
Query: 465 LHVFNGHKKAVSYVKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTV 523
GH VS V S+ + A S S D +LRLWD+ F GHT + V +
Sbjct: 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 524 NNEYIACGSETNEVFVYH 541
+N I GS + +++
Sbjct: 139 DNRQIVSGSRDKTIKLWN 156
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455
S +DG + +WD+TT + + H K SV FS ++ +VS GS D I
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVS-------GSRDKTIKL 154
Query: 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLPLHTFR-G 511
++ + + H + VS V+F N+ + S D +++W++ N L T G
Sbjct: 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIG 213
Query: 512 HTNEKNFVGLTVNNEYIACGSETNEVFVY 540
HT N V ++ + A G + + ++
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 55/209 (26%)
Query: 393 LIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------ 446
+A+ D ++ IWD+ + VM + HE+ +S+D+ LVSGS D V
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWDLR 195
Query: 447 -----------------------------GSADHHIHYYD------LRNISQPLHVFNGH 471
GS D + +D + + GH
Sbjct: 196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 472 KKAVSYVKFLSNNE-LASASTDSSLRLWDVKE-------NLPLH-----TFRGHTNEKNF 518
K +V V F + + + S S D S++LW+++ P T+ GH +
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 519 VGLTVNNEYIACGSETNEVFVYHKAISKP 547
V T N+EYI GS+ V + K P
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNP 344
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 27/140 (19%)
Query: 394 IASSDYDGIVTIWDVTTSQSVMEYEE-------HEKRAWSVDFSCTEPSMLVSGSDDCKV 446
IA+ D V +WD T V + H+ +SV F+ S++
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS-------- 273
Query: 447 GSADHHIHYYDLRNISQPLH-----------VFNGHKKAVSYVKFLSNNE-LASASTDSS 494
GS D + ++L+N + + GHK V V N+E + S S D
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333
Query: 495 LRLWDVKENLPLHTFRGHTN 514
+ WD K PL +GH N
Sbjct: 334 VLFWDKKSGNPLLMLQGHRN 353
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 464 PLHVFNGHKKAVSYVKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLT 522
P GH VS V +N A SAS D SLRLW+++ + F GHT + V +
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 523 VNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS--DSPT 580
+N I G N + V++ K H A H D ++S V + D+P
Sbjct: 119 PDNRQIVSGGRDNALRVWNV---KGECMHTLSRGA-HTD------WVSCVRFSPSLDAPV 168
Query: 581 MLTANRKGAIKVLVLA 596
+++ +KV LA
Sbjct: 169 IVSGGWDNLVKVWDLA 184
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 448 SADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN-ELASASTDSSLRLWDVKENLPL 506
S DH + ++L+N Q + F GH K V V F +N ++ S D++LR+W+VK +
Sbjct: 86 SWDHSLRLWNLQN-GQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC-M 143
Query: 507 HTF-RG-HTNEKNFVGL--TVNNEYIACGSETNEVFVYHKAISK 546
HT RG HT+ + V +++ I G N V V+ A +
Sbjct: 144 HTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N S+ +D + +W++ Q ++ H K SV FS + +VS G D+
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS-PDNRQIVS-------GGRDN 131
Query: 452 HIHYYDLRNISQPLHVFN--GHKKAVSYVKF---LSNNELASASTDSSLRLWDVKENLPL 506
+ ++++ + +H + H VS V+F L + S D+ +++WD+ +
Sbjct: 132 ALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 507 HTFRGHTN 514
+GHTN
Sbjct: 190 TDLKGHTN 197
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
+L ASSD DG+ +WD+T +++ E ++ C P+ + +
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAP----INQICFSPNRY------WMCAATEK 258
Query: 452 HIHYYDLRN---ISQPLHVFNGHKK----AVSYVKFLSNNELASASTDSSLRLWDVKEN 503
I +DL N I + G KK VS + L S TD+ +R+W V EN
Sbjct: 259 GIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCI-------FTHLRNKSDCPCCG 79
CPIC +L+T+ CGHS C CI T + KS CP CG
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 24/211 (11%)
Query: 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYTKN 392
++ F D + A+ ++ IF S E + TR K + ++++ K
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKE--------YSLDTRGKFILSIAYSPDGKY 178
Query: 393 LIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHH 452
L AS DGI+ I+D+ T + + E H S+ FS + +LV+ SDD +
Sbjct: 179 L-ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDG-------Y 229
Query: 453 IHYYDLR--NISQPLHVFNGHKKAVSYVKFLSNN-ELASASTDSSLRLWDVKENLPLHTF 509
I YD++ N++ L +GH V V F ++ S+S+D S+++WDV +HTF
Sbjct: 230 IKIYDVQHANLAGTL---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Query: 510 RGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540
H ++ V N I + E+ +Y
Sbjct: 287 FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 17/181 (9%)
Query: 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVS 476
+ H+ WSV + + S+ GS D + + R+ L GH+ V
Sbjct: 29 QAHDDAIWSVAWGTNKKE----NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 477 YVKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535
V +A S+S D+ +RLWD++ + + + + + +++Y+A G+
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144
Query: 536 EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595
+V ++ K S D FI ++ + D + + G I + +
Sbjct: 145 KVNIFGVESGKKEYSL-----------DTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 596 A 596
A
Sbjct: 194 A 194
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 63/152 (41%), Gaps = 8/152 (5%)
Query: 389 YTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448
+T + ASS D + +WD+ + + + AW++ FS + L +G+ KV
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKV-- 146
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHT 508
+ + + + + + K +S LAS + D + ++D+ LHT
Sbjct: 147 -----NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201
Query: 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540
GH + + +++ + S+ + +Y
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 13/156 (8%)
Query: 396 SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD--CKVGSADHHI 453
S +DG + +WD+ S + H K SV FS + +VS S D K+ +
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGEC 505
Query: 454 HYYDLRNISQPLHVFNGHKKAVSYVKFLSNN---ELASASTDSSLRLWDVKENLPLHTFR 510
Y IS+ GH+ VS V+F N + SAS D ++++W++ T
Sbjct: 506 KY----TISEGGE---GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 511 GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
GHT + V ++ + A G + V ++ A K
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 468 FNGHKKAVSYVKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526
GH V V S+ + A S S D LRLWD+ + F GHT + V +++N
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 527 YIACGSETNEVFVYHK------AISKPAASHR 552
I S + +++ IS+ HR
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 22/233 (9%)
Query: 310 QYSRLRVIAELRHGDLFHAA-----NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNE 364
+Y +L +IAELRH A+ N ++ + + D + + ++++ + +
Sbjct: 84 KYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLN 143
Query: 365 PRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRA 424
+ H R+ + + WNK ++I S D + + +W+V + + +E E
Sbjct: 144 VLNFH--------RAPIVSVKWNKDGTHII-SMDVENVTILWNVISGTVMQHFELKETGG 194
Query: 425 WSVDFSC----TEPSMLVSGSDDCK--VGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478
S++ + V DD K + I Y + P GH +S +
Sbjct: 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE-KTPTGKLIGHHGPISVL 253
Query: 479 KFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC 530
+F N+L SAS D +LR+W + F GH+ +++ I+C
Sbjct: 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISC 306
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 468 FNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPL 506
F GH +++ ++ ++++ S S D S+RLW +K+N L
Sbjct: 285 FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL 323
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 25/176 (14%)
Query: 329 ANIISSIEFDRDD-ELFASAGVSRRIKIF-----EFSSVVNEPRDVHYPMVEMPTRSKLS 382
+ + +EF D E + G R+I F EF + + ++ P + +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--------PVQGGIF 257
Query: 383 CLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD 442
LSW K A+ D + +WDVTTS+ V ++ +++ + ++ +G+
Sbjct: 258 ALSWLDSQK--FATVGADATIRVWDVTTSKCVQKWTLDKQQ-----LGNQQVGVVATGNG 310
Query: 443 DCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLW 498
S D +++Y+L + + L +GH K ++ L+ N L S S D + W
Sbjct: 311 RIISLSLDGTLNFYELGH-DEVLKTISGHNKGITA---LTVNPLISGSYDGRIXEW 362
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 353 IKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD----- 407
I++F+ S + +V + + + P R+K S +S + ++ IA+ D G + ++D
Sbjct: 469 IQVFKLSDL-----EVSFDL-KTPLRAKPSYISISP-SETYIAAGDVXGKILLYDLQSRE 521
Query: 408 VTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH 466
V TS+ + +W + E + D GS D +I Y ++ + +
Sbjct: 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIE---EDLVATGSLDTNIFIYSVKRPXKIIK 578
Query: 467 VFNGHKKAVSYVKFLSNNELASASTDSSLRLWDV 500
N HK V+ + + + + L S+ D+ ++ W+V
Sbjct: 579 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 25/176 (14%)
Query: 329 ANIISSIEFDRDD-ELFASAGVSRRIKIF-----EFSSVVNEPRDVHYPMVEMPTRSKLS 382
+ + +EF D E + G R+I F EF + + ++ P + +
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--------PVQGGIF 257
Query: 383 CLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD 442
LSW K A+ D + +WDVTTS+ V ++ +++ + ++ +G+
Sbjct: 258 ALSWLDSQK--FATVGADATIRVWDVTTSKCVQKWTLDKQQ-----LGNQQVGVVATGNG 310
Query: 443 DCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLW 498
S D +++Y+L + + L +GH K ++ L+ N L S S D + W
Sbjct: 311 RIISLSLDGTLNFYELGH-DEVLKTISGHNKGITA---LTVNPLISGSYDGRIMEW 362
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 353 IKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD----- 407
I++F+ S + +V + + + P R+K S +S + ++ IA+ D G + ++D
Sbjct: 469 IQVFKLSDL-----EVSFDL-KTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSRE 521
Query: 408 VTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH 466
V TS+ + +W + E + D GS D +I Y ++ + +
Sbjct: 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIE---EDLVATGSLDTNIFIYSVKRPMKIIK 578
Query: 467 VFNGHKKAVSYVKFLSNNELASASTDSSLRLWDV 500
N HK V+ + + + + L S+ D+ ++ W+V
Sbjct: 579 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
+S ++W K N +A V +WDV + + H R S+ ++ S ++S
Sbjct: 161 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILSS 215
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWD 499
GS HIH++D+R + +GH + V +++ + LAS D+ + +W
Sbjct: 216 ------GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 269
Query: 500 VKEN----LPLHTFRGH 512
+PL TF H
Sbjct: 270 SAPGEGGWVPLQTFTQH 286
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 373 VEMPTR-------SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAW 425
++M TR +K+ + W ++ L+ S+ DG + IWD T+ V + + +W
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKV--HAIPLRSSW 110
Query: 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---FNGHKKAVSYVKFLS 482
+ + V+ G D+ Y+L+ + V GH +S +FL
Sbjct: 111 VMTCAYAPSGNYVA------CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 164
Query: 483 NNELASASTDSSLRLWDVKENLPLHTFRGHTNE 515
+N++ ++S D++ LWD++ TF GHT +
Sbjct: 165 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 197
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 54/195 (27%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N I +S D +WD+ T Q + H S+ + + + VSG+ D
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGA-------CDA 217
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR 510
+D+R F GH+ ++ + F N N A+ S D++ RL+D++ + L T+
Sbjct: 218 SAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 276
Query: 511 --------------------------------------------GHTNEKNFVGLTVNNE 526
GH N + +G+T +
Sbjct: 277 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 336
Query: 527 YIACGSETNEVFVYH 541
+A GS + + +++
Sbjct: 337 AVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 373 VEMPTR-------SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAW 425
++M TR +K+ + W ++ L+ S+ DG + IWD T+ V + + +W
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKV--HAIPLRSSW 99
Query: 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---FNGHKKAVSYVKFLS 482
+ + V+ G D+ Y+L+ + V GH +S +FL
Sbjct: 100 VMTCAYAPSGNYVA------CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 483 NNELASASTDSSLRLWDVKENLPLHTFRGHTNE 515
+N++ ++S D++ LWD++ TF GHT +
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 54/195 (27%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N I +S D +WD+ T Q + H S+ + + + VSG+ D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGA-------CDA 206
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR 510
+D+R F GH+ ++ + F N N A+ S D++ RL+D++ + L T+
Sbjct: 207 SAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 511 --------------------------------------------GHTNEKNFVGLTVNNE 526
GH N + +G+T +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 527 YIACGSETNEVFVYH 541
+A GS + + +++
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
+S ++W K N +A V +WDV + + H R S+ ++ S ++S
Sbjct: 150 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILSS 204
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWD 499
GS HIH++D+R + +GH + V +++ + LAS D+ + +W
Sbjct: 205 ------GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258
Query: 500 VKEN----LPLHTFRGH 512
+PL TF H
Sbjct: 259 SAPGEGGWVPLQTFTQH 275
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 390 TKNLIASSDYDGIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448
TK + S D V +W+ + ++ + +E HE V F+ +PS SG C
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG---C---- 160
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLP 505
D + + L + + G ++ V+YV + + + +AS D ++++WD +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 506 LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
+ T GH + +F I GSE + +++ + K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 390 TKNLIASSDYDGIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448
TK + S D V +W+ + ++ + +E HE V F+ +PS SG C
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG---C---- 160
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLP 505
D + + L + + G ++ V+YV + + + +AS D ++++WD +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 506 LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
+ T GH + +F I GSE + +++ + K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 373 VEMPTR-------SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAW 425
++M TR +K+ + W ++ L+ S+ DG + IWD T+ V + + +W
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKV--HAIPLRSSW 99
Query: 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---FNGHKKAVSYVKFLS 482
+ + V+ G D+ Y+L+ + V GH +S +FL
Sbjct: 100 VMTCAYAPSGNYVA------CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 483 NNELASASTDSSLRLWDVKENLPLHTFRGHTNE 515
+N++ ++S D++ LWD++ TF GHT +
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 54/195 (27%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N I +S D +WD+ T Q + H S+ + + + VSG+ D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGA-------CDA 206
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR 510
+D+R F GH+ ++ + F N N A+ S D++ RL+D++ + L T+
Sbjct: 207 SAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 511 --------------------------------------------GHTNEKNFVGLTVNNE 526
GH N + +G+T +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 527 YIACGSETNEVFVYH 541
+A GS + + +++
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFP 89
CPIC + +A T CGH FC CI +R+ CP L +FP
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 58
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFP 89
CPIC + +A T CGH FC CI +R+ CP L +FP
Sbjct: 28 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 77
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 390 TKNLIASSDYDGIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448
TK + S D V +W+ + ++ + +E HE V F+ +PS SG C
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG---C---- 160
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLP 505
D + + L + + G ++ V+YV + + + +AS D ++++WD +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 506 LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
+ T GH + +F I GSE + +++ + K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 40 LCPICKQLMTDAF-MTACGHSFCYTCIFTHLRNKSDCPCCGCH 81
LC ICK +MTDA + CG+S+C CI T L + C CH
Sbjct: 15 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 373 VEMPTR-------SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAW 425
++M TR +K+ + W ++ L+++S DG + IWD T+ V + + +W
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQ-DGKLIIWDSYTTNKV--HAIPLRSSW 99
Query: 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---FNGHKKAVSYVKFLS 482
+ + V+ G D+ Y+L+ + V GH +S +FL
Sbjct: 100 VMTCAYAPSGNYVA------CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 483 NNELASASTDSSLRLWDVKENLPLHTFRGHTNE 515
+N++ ++S D++ LWD++ TF GHT +
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 54/195 (27%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N I +S D +WD+ T Q + H S+ + + + VSG+ D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGA-------CDA 206
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR 510
+D+R F GH+ ++ + F N N A+ S D++ RL+D++ + L T+
Sbjct: 207 SAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 511 --------------------------------------------GHTNEKNFVGLTVNNE 526
GH N + +G+T +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 527 YIACGSETNEVFVYH 541
+A GS + + +++
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 373 VEMPTR-------SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAW 425
++M TR +K+ + W ++ L+++S DG + IWD T+ V + + +W
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQ-DGKLIIWDSYTTNKV--HAIPLRSSW 99
Query: 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---FNGHKKAVSYVKFLS 482
+ + V+ G D+ Y+L+ + V GH +S +FL
Sbjct: 100 VMTCAYAPSGNYVA------CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 483 NNELASASTDSSLRLWDVKENLPLHTFRGHTNE 515
+N++ ++S D++ LWD++ TF GHT +
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 54/195 (27%)
Query: 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451
N I +S D +WD+ T Q + H S+ + + + VSG+ D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGA-------CDA 206
Query: 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR 510
+D+R F GH+ ++ + F N N A+ S D++ RL+D++ + L T+
Sbjct: 207 SAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 511 --------------------------------------------GHTNEKNFVGLTVNNE 526
GH N + +G+T +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 527 YIACGSETNEVFVYH 541
+A GS + + +++
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS--VMEYEEHEKRAWSVDFSCTEPS 435
R + + W + + SS +D + +WD T Q+ V +EE +
Sbjct: 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE----------TVYSHH 148
Query: 436 MLVSGSDDC--KVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE--LASAST 491
M + C VG+ + DL++ S H+ GH++ + V + + LA+AS
Sbjct: 149 MSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASA 207
Query: 492 DSSLRLWDVK 501
DS ++LWDV+
Sbjct: 208 DSRVKLWDVR 217
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 390 TKNLIASSDYDGIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448
TK + S D V +W+ + ++ + +E HE V F+ +PS SG C
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG---C---- 160
Query: 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE---LASASTDSSLRLWDVKENLP 505
D + + L + + G ++ V+YV + + + +AS D ++++WD +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 506 LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546
+ T GH + +F I GSE + +++ + K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 40 LCPICKQLMTDAF-MTACGHSFCYTCIFTHLRNKSDCPCC 78
LC ICK + DA +T C H+FC +CI H + CP C
Sbjct: 17 LCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 56
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 40 LCPICKQLMTDAF-MTACGHSFCYTCIFTHLRNKSDCPCCGCH 81
LC ICK +MTDA + CG+S+C CI T L + C CH
Sbjct: 17 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFP 89
CPIC + +A T CGH FC CI +R+ CP L +FP
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440
+S ++W K N +A V +WDV + + H R S+ ++ S ++S
Sbjct: 70 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN----SYILSS 124
Query: 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWD 499
GS HIH++D+R + +GH + V +++ + LAS D+ + +W
Sbjct: 125 ------GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178
Query: 500 VKEN----LPLHTFRGHTNEKNFVGL-TVNNEYIACGSETNE 536
+PL TF H V + +A G T++
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFP 89
CPIC + +A T CGH FC CI +R+ CP L +FP
Sbjct: 21 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCC 78
C IC + +A C HSFC CI ++ K +CP C
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 93
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 400 DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR 459
+G+V I+DV + + H+ R C + V S GS IH++D+R
Sbjct: 155 NGLVDIYDVESQTKLRTMAGHQAR-----VGCLSWNRHVLSS-----GSRSGAIHHHDVR 204
Query: 460 NISQPLHVFNGHKKAVSYVKFLSNN-ELASASTDSSLRLWDVKENLPLHTFRGH 512
+ + GH V + + S+ +LAS D+ +++WD + ++P T H
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH 258
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCI---FTHLRN---KSDCPCC 78
CPIC +L+ + C HSFC CI + RN K +CP C
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCC 78
C IC + +A C HSFC CI ++ K +CP C
Sbjct: 67 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 104
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 388 KYTKNLIASSDYDGIVTIWDVTTSQSVMEYE---EHEKRAWSVDFSCTEPSMLVSGSDDC 444
++ ++ + D + +WD+ + + H VDF + +VS S
Sbjct: 220 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSAS--- 273
Query: 445 KVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL 504
D I ++ + + + NGHK+ ++ +++ + + S S+D+++RLWD++
Sbjct: 274 ----GDRTIKVWNT-STCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGA 327
Query: 505 PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540
L GH E+ + +N+ I G+ ++ V+
Sbjct: 328 CLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVW 361
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 442 DDCKV--GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWD 499
DD K+ G D+ I +D +N + + GH +V +++ + + S+DS++R+WD
Sbjct: 142 DDQKIVSGLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWD 199
Query: 500 VKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA------ISKPAASHRF 553
V L+T H + + L NN + S+ + V+ A + + HR
Sbjct: 200 VNTGEMLNTLIHHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 554 GSDADHVDDDMGSYFISA 571
+ DD Y +SA
Sbjct: 258 AVNVVDFDD---KYIVSA 272
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCC 78
C IC + +A C HSFC CI ++ K +CP C
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPIC 93
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNK---SDCPCCGCHLT 83
CPIC +L+ + T C H FC C+ L K S CP C +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 471 HKKAVSYVKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE--Y 527
H VS V LS+ A S S D +++WD+ + + L ++R H + V + + + +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 528 IACGSETNEVFVYHKAISKPAA 549
++C SE N + ++ KPA+
Sbjct: 186 LSC-SEDNRILLWDTRCPKPAS 206
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 40 LCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRN-KSDCPCC 78
+CPIC ++ + T C H FC CI T LR+ +CP C
Sbjct: 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 96
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 420 HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479
++++ WS DFS +L +GS D K+ + L ++ HKKA+ V
Sbjct: 13 YKEKIWSFDFS---QGILATGSTDRKIKLVSVKYDDFTLIDVLDE----TAHKKAIRSVA 65
Query: 480 FLSNNEL-ASASTDSSLRLWDVKENLP-------LHTFRGHTNEKNFVGLTVNNEYIACG 531
+ + L A+ S DS++ +W +E+ L GH NE V + + Y+A
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125
Query: 532 SETNEVFVY 540
S V+++
Sbjct: 126 SRDKSVWIW 134
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 390 TKNLIASSDYDGIVTIWDVTTS--QSVMEYEEHEKRAWSVDFSCTEPSM-LVSGSDDCKV 446
++ L+ASS YD V IW + V HE WS DF TE L SGSDD V
Sbjct: 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 41 CPICKQLMTDAFM-------TACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89
CPIC ++ T CGH FC C+ L+N + CP C + K P
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 41 CPICKQLMTDAFM-------TACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89
CPIC ++ T CGH FC C+ L+N + CP C + K P
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 41 CPICKQLMTDAFM-------TACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89
CPIC ++ T CGH FC C+ L+N + CP C + K P
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 130
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 41 CPICKQLMTDAFM-------TACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89
CPIC ++ T CGH FC C+ L+N + CP C + K P
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCC 78
C IC+Q + +T C H FC +C H R C C
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 40 LCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRN-KSDCPCC 78
+CPIC ++ + T C H FC CI T LR+ +CP C
Sbjct: 55 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 95
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHL------RNKSDCPCC 78
CPIC +L+T CGHSFC C+ + + +S CP C
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVC 65
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEF--SSVVNEPRDVHYPMVEMPTRSK-LSC 383
H A ++ +D + AS + ++E +V R+ P++ + +K +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE---PVITLEGHTKRVGI 136
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY--EEHEKRAWSVDFS 430
++W+ +N++ S+ D ++ +WDV T +V+ + H +SVD+S
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 41 CPICKQLMTDAFM-------TACGHSFCYTCIFTHLRNKSDCPCC 78
CPIC ++ T CGH FC C+ L+N + CP C
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEF--SSVVNEPRDVHYPMVEMPTRSK-LSC 383
H A ++ +D + AS + ++E +V R+ P++ + +K +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE---PVITLEGHTKRVGI 136
Query: 384 LSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY--EEHEKRAWSVDFS 430
++W+ +N++ S+ D ++ +WDV T +V+ + H +SVD+S
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 40 LCPICKQLMTDAF-MTACGHSFCYTCIFTHLRNKSDCPCC 78
+C +C DA + C HSFC TCI +L CP C
Sbjct: 13 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 40 LCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRN-KSDCPCC 78
+CPIC ++ + T C H FC CI T LR+ +CP C
Sbjct: 36 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 76
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 40 LCPICKQLMTDAF-MTACGHSFCYTCIFTHLRNKSDCPCC 78
+C +C DA + C HSFC TCI +L CP C
Sbjct: 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS----DCPCC 78
+CPIC ++ CGH+FC CI T + S CP C
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCI-TQIGETSCGFFKCPLC 63
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 35.8 bits (81), Expect = 0.066, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS----DCPCC 78
+CPIC ++ CGH+FC CI T + S CP C
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCI-TQIGETSCGFFKCPLC 63
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCI---FTHLRNKSDCPCC 78
C +C + + + + CGH+FC CI + L CP C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 41 CPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKSDCPCC 78
CPIC + ++ M C H+FCY CI +R CP C
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC 46
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 40 LCPICKQLMTDAF-MTACGHSFCYTCIFTHLRNKSDCPCC 78
+C +C DA + C HSFC TCI +L CP C
Sbjct: 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHL 82
LC IC + D + CGH C +C+ + ++ CP C C +
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHL 82
LC IC + D + CGH C +C+ + ++ CP C C +
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS----QPLHVFNGHKKAVSYVK 479
AW+ D + + P + V+GS +R I+ Q + + GH A++ +K
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGI-------------IRIINPITMQCIKHYVGHGNAINELK 121
Query: 480 FLSN--NELASASTDSSLRLWDVKENLPLHTFRG 511
F N L S S D +LRLW+++ + + F G
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS----QPLHVFNGHKKAVSYVK 479
AW+ D + + P + V+GS +R I+ Q + + GH A++ +K
Sbjct: 76 AWTYDSNTSHPLLAVAGSRGI-------------IRIINPITMQCIKHYVGHGNAINELK 122
Query: 480 FLSN--NELASASTDSSLRLWDVKENLPLHTFRG 511
F N L S S D +LRLW+++ + + F G
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS----QPLHVFNGHKKAVSYVK 479
AW+ D + + P + V+GS +R I+ Q + + GH A++ +K
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGI-------------IRIINPITMQCIKHYVGHGNAINELK 121
Query: 480 FLSN--NELASASTDSSLRLWDVKENLPLHTFRG 511
F N L S S D +LRLW+++ + + F G
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 21/95 (22%)
Query: 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-----FNGHKKAVSYV 478
AW+ D + + P + V+GS + I P+ + + GH A++ +
Sbjct: 112 AWTYDSNTSHPLLAVAGS--------------RGIIRIINPITMQCIKHYVGHGNAINEL 157
Query: 479 KF--LSNNELASASTDSSLRLWDVKENLPLHTFRG 511
KF N L S S D +LRLW+++ + + F G
Sbjct: 158 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS----QPLHVFNGHKKAVSYVK 479
AW+ D + + P + V+GS +R I+ Q + + GH A++ +K
Sbjct: 71 AWTYDSNTSHPLLAVAGSRGI-------------IRIINPITMQCIKHYVGHGNAINELK 117
Query: 480 FLSN--NELASASTDSSLRLWDVKENLPLHTFRG 511
F N L S S D +LRLW+++ + + F G
Sbjct: 118 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 448 SADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN-ELASASTDSSLRLWDVKENLPL 506
S D + + +++ S P + GH+ V+ + + + SAS D ++RLW+ +
Sbjct: 155 SQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
Query: 507 HTFRGHTN 514
HTF N
Sbjct: 214 HTFNRKEN 221
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 446 VGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENL 504
+G+ + I D N + + H ++ +KF + E L S+S D L++W VK+
Sbjct: 111 LGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 169
Query: 505 PLHTFRGH 512
T GH
Sbjct: 170 NPRTLIGH 177
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 448 SADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN-ELASASTDSSLRLWDVKENLPL 506
S D + + +++ S P + GH+ V+ + + + SAS D ++RLW+ +
Sbjct: 158 SQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
Query: 507 HTFR 510
HTF
Sbjct: 217 HTFN 220
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 471 HKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGH 512
H ++ +KF + E L S+S D L++W VK+ T GH
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 30/235 (12%)
Query: 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCL 384
++ ++S+ +D + EL G I + E D Y ++ + + L
Sbjct: 55 VYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGE--DPLYTLI--GHQGNVCSL 110
Query: 385 SWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDF-SCTEPSMLVSGSDD 443
S + ++ S +D +W V + H W S +E L +
Sbjct: 111 S---FQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTA---- 161
Query: 444 CKVGSADHHIHYYDLRNISQPLHVFNG-HKKAVSYVKFLSNNELASASTDSSLRLWDVKE 502
SAD I + + + F+G H V ++ + + S S D ++L D
Sbjct: 162 ----SADKTIKLWQNDKV---IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHT 214
Query: 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK-------AISKPAAS 550
L T+ GH + + L N + ++CG E V ++ K I+ PA S
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITLPAIS 268
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFT-HLRNKSDCPCCGCHL 82
LC IC + D + CGH C +C+ + CP C C +
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 41 CPICKQLM-----TDAFMTACGHSFCYTCI-FTHLRNKSDCPCCGCHL 82
CP CK + CGH+ C +C+ +R +CP CG L
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHL 82
LC IC + D + CGH C +C+ + ++ CP C C +
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHL 82
LC IC + D + CGH C +C+ + ++ CP C C +
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHL 82
LC IC + D + CGH C +C+ + ++ CP C C +
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHL 82
LC IC + D + CGH C +C+ + ++ CP C C +
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 41 CPICKQ---LMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83
CP+CK+ L C H F +CI L CP C LT
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLR-NKSDCPCC 78
C IC+ ++ D T+C H FC CI L+ S CP C
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSC 64
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 388 KYTK--NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCK 445
KY K +L+ S D ++W + + + H WS+D C + C
Sbjct: 39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF--------TKYCV 90
Query: 446 VGSADHHIHYYDLRN 460
GSAD+ I +D+ N
Sbjct: 91 TGSADYSIKLWDVSN 105
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHL 82
LC IC + D + CGH C +C+ + CP C C +
Sbjct: 340 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 41 CPICKQLMTDA----FMTACGHSFCYTCIFTHLRNKSDCPCC 78
C +C + D F+ CGH F C+ L + S CP C
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE------EHEKRAWS 426
VE P S + + LIA+ +G V I +++T + + +E + S
Sbjct: 189 VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 248
Query: 427 VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR--NISQPLHVFN---GHKKAVSYVKFL 481
V FS + S+L D G + + R ++S P H G S+V L
Sbjct: 249 VKFS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 307
Query: 482 SNNE----LASASTDSSLRLWDVKENLPLHTFRGHTNE 515
S N+ L SA D LR WDVK + T H ++
Sbjct: 308 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 345
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 53 MTACGHSFCYTCIFTHLRNKSDCPCCGC 80
M C H FCY C H K D C GC
Sbjct: 17 MIPCKHVFCYDCAILH-EKKGDKMCPGC 43
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 9/189 (4%)
Query: 126 SVKELDGLLSLLVAKKRKLEQEEAETNMQILLNFLHCLRKQKLEELNEIQADLRCIEEDV 185
+KEL S+ + K++ L E+ + ++L +F + K E N+ + DL+ +EE+
Sbjct: 24 PIKELPA--SIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEE 81
Query: 186 YAVEKHKIELYRARGRCLAKLRTFDDFTASKKTDEKAQISSQGLLMKDACGGPDSPYASQ 245
A + L R D T + + IS G D ++
Sbjct: 82 KAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENE 141
Query: 246 SGLTAARKQRVRAQLNDLKE-YYLQKRRQSTAQSHKEDEGDLYAVSRE-GYHPGLEDFRS 303
SG KQ + ND + YL+ RQ+T SH++ + ++ + R + P +D +
Sbjct: 142 SG-----KQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLA 196
Query: 304 VLATFTQYS 312
+L F Y
Sbjct: 197 LLIDFKDYP 205
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE------EHEKRAWS 426
VE P S + + LIA+ +G V I +++T + + +E + S
Sbjct: 179 VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238
Query: 427 VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR--NISQPLHVFN---GHKKAVSYVKFL 481
V FS + S+L D G + + R ++S P H G S+V L
Sbjct: 239 VKFS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 297
Query: 482 SNNE----LASASTDSSLRLWDVKENLPLHTFRGHTNE 515
S N+ L SA D LR WDVK + T H ++
Sbjct: 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,369,837
Number of Sequences: 62578
Number of extensions: 639465
Number of successful extensions: 2189
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 375
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)