Query 042883
Match_columns 597
No_of_seqs 584 out of 5164
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 10:34:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 8.2E-43 1.8E-47 314.6 28.6 321 249-594 71-458 (459)
2 KOG0271 Notchless-like WD40 re 100.0 2.1E-42 4.6E-47 307.8 24.3 248 323-597 109-440 (480)
3 KOG0271 Notchless-like WD40 re 100.0 4.1E-42 8.9E-47 306.0 23.6 254 322-594 150-479 (480)
4 PLN00181 protein SPA1-RELATED; 100.0 2.2E-36 4.7E-41 327.7 49.8 351 245-595 373-792 (793)
5 KOG0286 G-protein beta subunit 100.0 1.9E-37 4E-42 267.2 31.3 246 323-595 49-302 (343)
6 KOG0263 Transcription initiati 100.0 1E-38 2.2E-43 310.8 23.9 249 327-596 376-649 (707)
7 KOG0279 G protein beta subunit 100.0 2.5E-36 5.3E-41 258.7 26.7 249 323-597 9-263 (315)
8 KOG0279 G protein beta subunit 100.0 1.6E-35 3.5E-40 253.7 26.9 253 324-596 58-313 (315)
9 KOG0284 Polyadenylation factor 100.0 9.2E-37 2E-41 274.3 16.0 241 327-594 136-378 (464)
10 KOG0286 G-protein beta subunit 100.0 6.5E-35 1.4E-39 251.5 26.3 245 328-594 96-343 (343)
11 KOG0289 mRNA splicing factor [ 100.0 2E-33 4.3E-38 254.8 34.4 239 329-594 219-460 (506)
12 KOG0273 Beta-transducin family 100.0 1E-34 2.3E-39 265.8 25.5 239 328-596 234-482 (524)
13 KOG0285 Pleiotropic regulator 100.0 9.9E-35 2.2E-39 256.9 21.1 242 325-596 147-389 (460)
14 KOG0284 Polyadenylation factor 100.0 1.3E-35 2.8E-40 267.0 15.8 241 327-596 94-337 (464)
15 KOG0265 U5 snRNP-specific prot 100.0 9.7E-34 2.1E-38 245.3 24.0 254 323-595 41-337 (338)
16 KOG0263 Transcription initiati 100.0 4.3E-34 9.4E-39 278.7 22.0 206 323-545 445-651 (707)
17 KOG0645 WD40 repeat protein [G 100.0 1.9E-32 4.1E-37 233.9 28.3 261 324-596 9-311 (312)
18 KOG0295 WD40 repeat-containing 100.0 1.2E-33 2.7E-38 250.7 21.2 245 324-595 145-405 (406)
19 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-34 3.1E-39 261.5 15.5 202 323-541 255-458 (459)
20 KOG0315 G-protein beta subunit 100.0 6.5E-33 1.4E-37 233.7 24.4 246 325-597 36-289 (311)
21 KOG0276 Vesicle coat complex C 100.0 5.1E-33 1.1E-37 263.0 24.2 244 326-596 10-257 (794)
22 KOG0273 Beta-transducin family 100.0 1.5E-32 3.2E-37 251.8 25.4 241 326-596 273-523 (524)
23 KOG0277 Peroxisomal targeting 100.0 8.3E-33 1.8E-37 233.8 19.4 243 327-594 58-307 (311)
24 KOG0288 WD40 repeat protein Ti 100.0 2.4E-31 5.3E-36 239.9 29.9 249 327-593 173-458 (459)
25 KOG0291 WD40-repeat-containing 100.0 7.2E-32 1.6E-36 260.7 27.3 255 326-597 347-613 (893)
26 KOG0281 Beta-TrCP (transducin 100.0 4.4E-33 9.5E-38 245.5 16.5 232 328-597 196-429 (499)
27 KOG0316 Conserved WD40 repeat- 100.0 1.5E-31 3.2E-36 223.7 22.5 244 325-596 13-257 (307)
28 KOG0266 WD40 repeat-containing 100.0 3.2E-31 6.9E-36 266.9 29.0 248 327-597 157-410 (456)
29 KOG0295 WD40 repeat-containing 100.0 3.6E-32 7.8E-37 241.5 19.3 246 324-597 103-365 (406)
30 KOG0293 WD40 repeat-containing 100.0 1.9E-31 4.1E-36 240.4 23.7 255 325-596 220-513 (519)
31 KOG0318 WD40 repeat stress pro 100.0 8.9E-31 1.9E-35 243.3 27.5 253 327-596 188-602 (603)
32 KOG0282 mRNA splicing factor [ 100.0 2.4E-32 5.2E-37 251.4 16.4 243 325-594 210-503 (503)
33 KOG0643 Translation initiation 100.0 1.8E-30 4E-35 221.2 25.1 261 324-596 5-317 (327)
34 KOG0319 WD40-repeat-containing 100.0 3.5E-31 7.6E-36 255.7 22.0 248 324-594 360-617 (775)
35 KOG0264 Nucleosome remodeling 100.0 2E-30 4.4E-35 237.6 22.5 266 324-596 119-404 (422)
36 KOG0266 WD40 repeat-containing 100.0 5.2E-30 1.1E-34 258.1 27.8 246 324-596 198-454 (456)
37 KOG0315 G-protein beta subunit 100.0 6.9E-30 1.5E-34 215.5 23.4 231 342-597 11-246 (311)
38 KOG0281 Beta-TrCP (transducin 100.0 3E-31 6.6E-36 233.9 15.4 244 323-596 231-477 (499)
39 KOG0276 Vesicle coat complex C 100.0 2.4E-30 5.2E-35 245.0 22.2 238 328-592 54-295 (794)
40 cd00200 WD40 WD40 domain, foun 100.0 3.9E-29 8.4E-34 240.2 31.3 244 325-596 5-249 (289)
41 KOG0285 Pleiotropic regulator 100.0 4E-30 8.7E-35 227.8 21.9 258 316-595 176-438 (460)
42 KOG0291 WD40-repeat-containing 100.0 1.4E-29 3E-34 245.0 26.4 239 329-596 307-550 (893)
43 KOG0296 Angio-associated migra 100.0 1.3E-29 2.9E-34 225.4 23.9 249 325-596 60-398 (399)
44 KOG0292 Vesicle coat complex C 100.0 2.9E-30 6.2E-35 253.6 21.6 243 328-596 8-280 (1202)
45 KOG0318 WD40 repeat stress pro 100.0 7.4E-29 1.6E-33 230.6 25.9 255 327-596 57-350 (603)
46 KOG1407 WD40 repeat protein [F 100.0 3.7E-29 8.1E-34 212.6 21.8 254 323-596 14-311 (313)
47 PTZ00421 coronin; Provisional 100.0 1.9E-28 4.2E-33 245.2 30.9 250 329-596 20-290 (493)
48 cd00200 WD40 WD40 domain, foun 100.0 2.1E-28 4.5E-33 235.1 30.1 242 325-594 47-289 (289)
49 KOG0310 Conserved WD40 repeat- 100.0 3.2E-29 7E-34 231.3 22.9 238 328-593 67-306 (487)
50 KOG0283 WD40 repeat-containing 100.0 6.9E-29 1.5E-33 244.6 25.1 249 327-596 265-576 (712)
51 KOG0277 Peroxisomal targeting 100.0 3.8E-29 8.2E-34 211.7 19.9 240 333-596 12-265 (311)
52 KOG0278 Serine/threonine kinas 100.0 4.8E-30 1E-34 216.5 13.1 245 323-597 53-298 (334)
53 KOG0313 Microtubule binding pr 100.0 6.4E-29 1.4E-33 222.1 20.6 247 323-597 99-377 (423)
54 PTZ00421 coronin; Provisional 100.0 4.4E-28 9.4E-33 242.7 29.1 234 325-577 71-314 (493)
55 KOG0305 Anaphase promoting com 100.0 1.5E-28 3.3E-33 236.2 24.0 236 329-595 217-460 (484)
56 KOG0640 mRNA cleavage stimulat 100.0 8.6E-29 1.9E-33 215.3 19.8 266 320-595 103-425 (430)
57 KOG0275 Conserved WD40 repeat- 100.0 6.3E-30 1.4E-34 223.6 12.0 248 326-594 210-507 (508)
58 PTZ00420 coronin; Provisional 100.0 2E-27 4.4E-32 238.6 31.2 225 347-596 50-293 (568)
59 KOG0319 WD40-repeat-containing 100.0 1.4E-28 3.1E-33 237.8 21.4 247 324-597 318-578 (775)
60 KOG0313 Microtubule binding pr 100.0 9E-28 2E-32 214.8 22.9 245 325-596 140-418 (423)
61 KOG0292 Vesicle coat complex C 100.0 7E-28 1.5E-32 237.0 24.1 241 327-595 49-320 (1202)
62 KOG1446 Histone H3 (Lys4) meth 100.0 1E-26 2.2E-31 204.1 28.8 243 328-597 13-263 (311)
63 KOG0310 Conserved WD40 repeat- 100.0 5.4E-28 1.2E-32 223.3 20.9 241 327-596 24-268 (487)
64 KOG0299 U3 snoRNP-associated p 100.0 2.6E-27 5.6E-32 217.2 23.1 260 326-597 139-411 (479)
65 KOG0268 Sof1-like rRNA process 100.0 2E-28 4.4E-33 217.5 15.3 244 323-595 60-344 (433)
66 KOG0265 U5 snRNP-specific prot 100.0 1.9E-27 4.1E-32 206.4 20.0 204 372-597 41-247 (338)
67 KOG0306 WD40-repeat-containing 100.0 2.3E-27 5.1E-32 229.6 22.6 249 323-595 367-663 (888)
68 KOG0274 Cdc4 and related F-box 100.0 5.6E-27 1.2E-31 234.7 24.4 238 325-597 245-483 (537)
69 KOG0296 Angio-associated migra 100.0 9.8E-27 2.1E-31 207.2 22.4 210 323-543 100-398 (399)
70 KOG0294 WD40 repeat-containing 100.0 2.5E-26 5.4E-31 200.8 23.7 237 327-596 41-281 (362)
71 KOG0772 Uncharacterized conser 100.0 1.2E-26 2.6E-31 215.3 23.1 214 323-546 161-397 (641)
72 KOG1332 Vesicle coat complex C 100.0 3.5E-27 7.6E-32 198.7 17.5 250 327-595 9-285 (299)
73 KOG0641 WD40 repeat protein [G 100.0 1.3E-25 2.9E-30 186.9 25.6 251 327-596 30-303 (350)
74 PTZ00420 coronin; Provisional 100.0 9.5E-26 2E-30 226.6 29.9 235 324-578 69-318 (568)
75 KOG0316 Conserved WD40 repeat- 100.0 1.6E-26 3.4E-31 193.7 19.9 199 373-596 12-213 (307)
76 KOG0299 U3 snoRNP-associated p 100.0 1.5E-26 3.3E-31 212.2 21.4 228 327-584 200-443 (479)
77 KOG0274 Cdc4 and related F-box 99.9 2.2E-26 4.7E-31 230.5 23.7 234 327-596 206-441 (537)
78 KOG0973 Histone transcription 99.9 2.8E-26 6E-31 232.2 24.4 251 326-596 66-355 (942)
79 KOG0641 WD40 repeat protein [G 99.9 3.5E-25 7.5E-30 184.4 26.6 250 326-596 86-349 (350)
80 KOG0300 WD40 repeat-containing 99.9 2.1E-26 4.5E-31 201.2 20.2 266 314-596 171-476 (481)
81 KOG0282 mRNA splicing factor [ 99.9 1.5E-27 3.3E-32 220.0 13.6 215 373-597 209-463 (503)
82 KOG0306 WD40-repeat-containing 99.9 5.8E-26 1.3E-30 220.0 23.0 249 325-596 103-580 (888)
83 KOG0289 mRNA splicing factor [ 99.9 2.1E-25 4.6E-30 202.9 25.0 245 325-595 257-505 (506)
84 KOG0264 Nucleosome remodeling 99.9 2.4E-26 5.1E-31 211.0 18.8 213 324-543 172-404 (422)
85 KOG0645 WD40 repeat protein [G 99.9 2.2E-25 4.7E-30 190.9 23.1 206 373-595 9-224 (312)
86 KOG0301 Phospholipase A2-activ 99.9 5.8E-26 1.3E-30 218.3 21.8 234 325-596 53-288 (745)
87 KOG0647 mRNA export protein (c 99.9 2.8E-25 6.1E-30 193.1 23.5 251 328-596 26-281 (347)
88 KOG0269 WD40 repeat-containing 99.9 1.1E-26 2.4E-31 225.9 16.4 249 329-596 39-296 (839)
89 KOG0308 Conserved WD40 repeat- 99.9 6E-26 1.3E-30 216.6 18.7 250 327-596 19-285 (735)
90 KOG0278 Serine/threonine kinas 99.9 2.2E-26 4.8E-31 194.4 13.3 242 325-597 10-255 (334)
91 KOG0300 WD40 repeat-containing 99.9 1E-24 2.2E-29 190.7 23.6 243 324-596 143-428 (481)
92 KOG0269 WD40 repeat-containing 99.9 2.7E-26 5.9E-31 223.2 14.9 238 331-591 89-335 (839)
93 KOG0302 Ribosome Assembly prot 99.9 8E-25 1.7E-29 195.8 20.7 259 326-594 148-436 (440)
94 KOG2096 WD40 repeat protein [G 99.9 2E-24 4.4E-29 189.0 22.5 259 322-594 79-400 (420)
95 KOG1274 WD40 repeat protein [G 99.9 2.8E-24 6.1E-29 213.3 26.5 245 326-597 10-263 (933)
96 KOG0973 Histone transcription 99.9 1.1E-24 2.4E-29 220.6 23.2 249 326-595 10-311 (942)
97 KOG4283 Transcription-coupled 99.9 1.5E-24 3.2E-29 187.9 20.0 212 327-547 41-280 (397)
98 KOG0270 WD40 repeat-containing 99.9 1.4E-24 3E-29 198.5 20.5 249 331-596 175-449 (463)
99 PLN00181 protein SPA1-RELATED; 99.9 2.3E-23 4.9E-28 226.4 32.7 222 350-596 457-690 (793)
100 KOG2445 Nuclear pore complex c 99.9 1.8E-23 3.9E-28 182.4 25.3 256 327-594 11-316 (361)
101 KOG1036 Mitotic spindle checkp 99.9 9.1E-24 2E-28 184.6 23.5 247 328-596 12-262 (323)
102 KOG0305 Anaphase promoting com 99.9 2.7E-24 5.9E-29 207.1 22.3 230 335-596 183-419 (484)
103 KOG0643 Translation initiation 99.9 8.7E-24 1.9E-28 180.7 21.6 206 371-597 3-221 (327)
104 KOG0293 WD40 repeat-containing 99.9 8.1E-25 1.8E-29 197.8 15.9 208 324-543 264-513 (519)
105 KOG1539 WD repeat protein [Gen 99.9 1.2E-23 2.6E-28 206.6 24.9 247 327-594 200-646 (910)
106 KOG0301 Phospholipase A2-activ 99.9 3.8E-24 8.3E-29 205.9 20.3 239 325-596 10-249 (745)
107 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.4E-29 208.0 15.6 245 324-595 68-326 (735)
108 KOG0288 WD40 repeat protein Ti 99.9 2.7E-23 5.8E-28 188.2 22.8 204 376-597 173-418 (459)
109 KOG0275 Conserved WD40 repeat- 99.9 1.1E-24 2.3E-29 191.0 13.3 205 373-596 208-423 (508)
110 KOG0646 WD40 repeat protein [G 99.9 1.7E-23 3.8E-28 192.6 21.0 237 342-597 51-308 (476)
111 KOG0639 Transducin-like enhanc 99.9 3.1E-24 6.8E-29 198.6 15.8 245 325-595 415-662 (705)
112 KOG0283 WD40 repeat-containing 99.9 1.2E-23 2.5E-28 208.0 20.6 203 323-544 363-577 (712)
113 KOG0640 mRNA cleavage stimulat 99.9 1E-23 2.2E-28 183.9 17.5 207 372-597 106-336 (430)
114 KOG0268 Sof1-like rRNA process 99.9 1.7E-24 3.8E-29 192.6 12.6 206 375-596 63-302 (433)
115 KOG0267 Microtubule severing p 99.9 7.7E-25 1.7E-29 211.5 10.2 236 325-588 24-260 (825)
116 KOG0302 Ribosome Assembly prot 99.9 1.8E-23 3.9E-28 187.2 17.9 205 374-596 147-378 (440)
117 KOG1036 Mitotic spindle checkp 99.9 2E-22 4.3E-27 176.3 23.5 232 323-586 48-294 (323)
118 KOG0650 WD40 repeat nucleolar 99.9 1E-22 2.2E-27 192.7 22.9 300 249-594 340-678 (733)
119 KOG0307 Vesicle coat complex C 99.9 5E-24 1.1E-28 216.9 14.6 250 327-596 62-327 (1049)
120 KOG0646 WD40 repeat protein [G 99.9 9.1E-23 2E-27 187.9 21.1 221 328-576 80-329 (476)
121 KOG4328 WD40 protein [Function 99.9 7.5E-23 1.6E-27 187.8 20.3 250 327-595 184-449 (498)
122 KOG2055 WD40 repeat protein [G 99.9 3.2E-22 7E-27 183.9 24.3 246 328-596 212-512 (514)
123 KOG1408 WD40 repeat protein [F 99.9 7.7E-23 1.7E-27 197.2 20.4 245 326-596 456-713 (1080)
124 KOG0639 Transducin-like enhanc 99.9 3.9E-23 8.3E-28 191.5 17.4 239 328-595 464-703 (705)
125 KOG1273 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 176.9 20.2 244 332-596 26-322 (405)
126 KOG1407 WD40 repeat protein [F 99.9 5.6E-23 1.2E-27 175.2 16.9 201 374-595 16-260 (313)
127 KOG1445 Tumor-specific antigen 99.9 3.8E-23 8.2E-28 196.7 17.5 139 447-596 599-750 (1012)
128 KOG0647 mRNA export protein (c 99.9 5.7E-22 1.2E-26 172.7 23.1 228 326-584 69-311 (347)
129 KOG1332 Vesicle coat complex C 99.9 5.3E-23 1.1E-27 173.7 16.1 208 324-543 51-286 (299)
130 KOG0772 Uncharacterized conser 99.9 3.5E-23 7.7E-28 192.5 15.9 207 372-596 161-394 (641)
131 KOG0267 Microtubule severing p 99.9 3.8E-24 8.3E-29 206.7 9.4 220 344-597 7-227 (825)
132 KOG1446 Histone H3 (Lys4) meth 99.9 2E-21 4.4E-26 170.9 25.2 237 328-594 55-301 (311)
133 KOG2048 WD40 repeat protein [G 99.9 4.1E-21 8.8E-26 184.9 27.0 241 328-596 24-275 (691)
134 KOG4283 Transcription-coupled 99.9 4.4E-22 9.5E-27 172.6 17.7 212 376-596 41-276 (397)
135 KOG1007 WD repeat protein TSSC 99.9 1.7E-21 3.7E-26 168.6 20.5 263 323-595 57-360 (370)
136 KOG1063 RNA polymerase II elon 99.9 1.4E-21 3E-26 188.4 20.7 262 326-596 264-648 (764)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-20 2.8E-25 182.6 27.7 236 331-597 32-280 (300)
138 KOG0321 WD40 repeat-containing 99.9 2E-21 4.3E-26 185.6 21.0 250 324-596 95-391 (720)
139 KOG0270 WD40 repeat-containing 99.9 6.4E-22 1.4E-26 181.2 16.2 209 326-549 240-455 (463)
140 KOG1408 WD40 repeat protein [F 99.9 3.2E-21 6.9E-26 186.2 21.0 256 326-597 366-672 (1080)
141 KOG0294 WD40 repeat-containing 99.9 9.7E-21 2.1E-25 166.0 22.1 227 343-596 3-237 (362)
142 KOG2919 Guanine nucleotide-bin 99.9 1.3E-20 2.7E-25 165.8 22.5 246 331-596 51-327 (406)
143 KOG0321 WD40 repeat-containing 99.9 4E-21 8.6E-26 183.6 20.7 248 334-597 54-348 (720)
144 KOG1274 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 187.8 24.0 228 328-589 55-293 (933)
145 KOG4378 Nuclear protein COP1 [ 99.9 2.8E-21 6.1E-26 179.0 17.3 238 332-596 37-280 (673)
146 KOG0290 Conserved WD40 repeat- 99.9 1.9E-20 4.1E-25 162.3 20.3 246 326-593 93-362 (364)
147 KOG1034 Transcriptional repres 99.9 3.6E-20 7.9E-25 163.3 22.2 252 327-596 36-383 (385)
148 KOG1539 WD repeat protein [Gen 99.9 5E-20 1.1E-24 181.4 25.1 249 332-597 162-607 (910)
149 KOG2106 Uncharacterized conser 99.9 2.2E-19 4.7E-24 167.1 27.0 245 326-594 197-519 (626)
150 KOG2106 Uncharacterized conser 99.9 6.1E-20 1.3E-24 170.7 22.7 255 322-594 97-396 (626)
151 KOG0303 Actin-binding protein 99.9 8.3E-20 1.8E-24 164.8 22.6 204 374-596 77-294 (472)
152 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-20 2.5E-25 175.0 17.0 219 333-578 83-305 (673)
153 KOG4328 WD40 protein [Function 99.9 2.6E-20 5.6E-25 171.3 17.8 244 327-594 232-493 (498)
154 KOG2048 WD40 repeat protein [G 99.8 5E-19 1.1E-23 170.6 25.2 240 327-593 67-316 (691)
155 KOG0307 Vesicle coat complex C 99.8 8.5E-21 1.8E-25 193.6 13.1 211 327-546 114-330 (1049)
156 KOG0303 Actin-binding protein 99.8 1.2E-19 2.6E-24 163.8 18.8 212 326-548 78-299 (472)
157 KOG1007 WD repeat protein TSSC 99.8 1.4E-19 3E-24 156.9 18.1 205 328-542 122-360 (370)
158 KOG2096 WD40 repeat protein [G 99.8 3.3E-19 7.2E-24 156.5 19.1 210 374-596 82-308 (420)
159 KOG0322 G-protein beta subunit 99.8 1E-19 2.2E-24 155.7 14.6 243 327-595 12-322 (323)
160 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.8E-18 8.2E-23 165.3 27.7 230 342-596 2-237 (300)
161 KOG1188 WD40 repeat protein [G 99.8 2.4E-19 5.3E-24 159.1 16.9 243 342-595 41-345 (376)
162 KOG1587 Cytoplasmic dynein int 99.8 9.2E-19 2E-23 174.2 23.0 252 325-596 238-516 (555)
163 KOG0642 Cell-cycle nuclear pro 99.8 9.4E-20 2E-24 172.1 14.9 251 324-596 289-561 (577)
164 KOG4227 WD40 repeat protein [G 99.8 4.3E-19 9.2E-24 160.0 17.9 263 318-596 45-322 (609)
165 KOG1009 Chromatin assembly com 99.8 1.2E-18 2.6E-23 158.2 20.4 164 328-501 12-195 (434)
166 KOG1063 RNA polymerase II elon 99.8 7.1E-19 1.5E-23 169.9 19.9 257 323-596 355-699 (764)
167 KOG1273 WD40 repeat protein [G 99.8 7.2E-19 1.6E-23 154.3 18.2 193 381-596 26-226 (405)
168 KOG0649 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 143.0 22.6 234 332-595 13-273 (325)
169 KOG2919 Guanine nucleotide-bin 99.8 2.5E-18 5.3E-23 151.5 19.0 234 328-587 103-361 (406)
170 KOG1538 Uncharacterized conser 99.8 3.4E-18 7.3E-23 164.3 20.8 232 331-595 14-292 (1081)
171 KOG2445 Nuclear pore complex c 99.8 1E-17 2.3E-22 146.7 21.4 204 375-596 10-256 (361)
172 KOG0644 Uncharacterized conser 99.8 1.6E-19 3.4E-24 177.6 10.1 240 324-594 185-466 (1113)
173 KOG2110 Uncharacterized conser 99.8 7.3E-17 1.6E-21 145.1 25.0 234 330-596 6-248 (391)
174 KOG1445 Tumor-specific antigen 99.8 4.9E-18 1.1E-22 162.3 17.6 238 337-595 587-843 (1012)
175 KOG1645 RING-finger-containing 99.8 1.7E-16 3.7E-21 144.2 26.6 242 325-596 189-461 (463)
176 KOG1524 WD40 repeat-containing 99.8 7.3E-18 1.6E-22 158.1 16.3 207 341-592 75-282 (737)
177 KOG0290 Conserved WD40 repeat- 99.8 1.1E-17 2.3E-22 145.4 15.3 201 327-539 148-361 (364)
178 COG2319 FOG: WD40 repeat [Gene 99.8 7.2E-16 1.6E-20 157.4 30.3 245 325-596 61-314 (466)
179 KOG1272 WD40-repeat-containing 99.8 2E-18 4.4E-23 159.2 10.0 228 332-594 132-360 (545)
180 KOG2111 Uncharacterized conser 99.7 1E-15 2.2E-20 135.2 24.3 237 331-596 7-256 (346)
181 KOG2055 WD40 repeat protein [G 99.7 1.3E-16 2.8E-21 147.4 19.6 200 377-596 212-417 (514)
182 KOG1034 Transcriptional repres 99.7 2.6E-16 5.5E-21 139.3 20.5 209 327-543 87-383 (385)
183 KOG1517 Guanine nucleotide bin 99.7 1.5E-16 3.3E-21 160.8 20.7 254 329-596 1109-1381(1387)
184 KOG1587 Cytoplasmic dynein int 99.7 4E-16 8.7E-21 155.6 23.0 222 350-596 221-472 (555)
185 KOG1009 Chromatin assembly com 99.7 1.2E-16 2.6E-21 145.3 17.4 221 323-546 59-375 (434)
186 KOG1524 WD40 repeat-containing 99.7 9.4E-17 2E-21 150.8 15.1 184 325-540 100-283 (737)
187 KOG1523 Actin-related protein 99.7 1.4E-15 3E-20 134.4 21.3 204 329-546 10-239 (361)
188 KOG1310 WD40 repeat protein [G 99.7 1.7E-16 3.8E-21 149.4 15.5 219 323-554 44-314 (758)
189 KOG2110 Uncharacterized conser 99.7 2.1E-14 4.6E-19 129.4 27.9 194 330-544 47-249 (391)
190 PRK11028 6-phosphogluconolacto 99.7 7.4E-15 1.6E-19 143.6 27.2 243 328-596 33-304 (330)
191 KOG2394 WD40 protein DMR-N9 [G 99.7 3.3E-16 7.2E-21 147.4 16.6 197 340-575 184-383 (636)
192 KOG0771 Prolactin regulatory e 99.7 3.9E-16 8.4E-21 143.1 15.7 194 382-596 148-354 (398)
193 KOG0650 WD40 repeat nucleolar 99.7 2E-15 4.4E-20 143.9 20.9 212 371-596 393-637 (733)
194 KOG1334 WD40 repeat protein [G 99.7 2.2E-16 4.7E-21 146.9 13.4 256 323-595 136-465 (559)
195 COG2319 FOG: WD40 repeat [Gene 99.7 2E-14 4.4E-19 146.7 29.7 240 330-596 110-359 (466)
196 KOG3881 Uncharacterized conser 99.7 2.6E-15 5.7E-20 136.2 19.7 224 328-577 104-342 (412)
197 KOG0649 WD40 repeat protein [G 99.7 2.5E-14 5.4E-19 121.5 24.0 238 326-593 59-313 (325)
198 PF15227 zf-C3HC4_4: zinc fing 99.7 9.9E-18 2.1E-22 104.6 2.6 38 41-78 1-42 (42)
199 KOG1517 Guanine nucleotide bin 99.7 5.9E-15 1.3E-19 149.6 23.0 249 328-596 1063-1333(1387)
200 KOG1963 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 145.5 24.0 263 326-597 202-539 (792)
201 KOG1523 Actin-related protein 99.7 2.7E-15 5.7E-20 132.6 16.9 207 378-595 10-235 (361)
202 KOG2139 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 130.7 20.8 238 329-585 98-364 (445)
203 KOG0771 Prolactin regulatory e 99.7 1.3E-15 2.7E-20 139.8 15.2 197 333-544 148-355 (398)
204 KOG1240 Protein kinase contain 99.7 1.2E-14 2.7E-19 149.6 23.6 263 325-596 1044-1334(1431)
205 KOG3881 Uncharacterized conser 99.7 1.1E-14 2.3E-19 132.3 20.4 249 328-597 54-321 (412)
206 KOG0642 Cell-cycle nuclear pro 99.7 1.5E-15 3.3E-20 144.0 15.5 214 325-549 340-567 (577)
207 KOG1188 WD40 repeat protein [G 99.7 3.2E-15 7E-20 133.2 16.6 186 392-596 41-242 (376)
208 KOG2321 WD40 repeat protein [G 99.7 8.4E-15 1.8E-19 139.1 20.1 246 326-594 48-341 (703)
209 PRK01742 tolB translocation pr 99.7 1E-14 2.2E-19 147.1 21.1 211 350-595 183-400 (429)
210 PRK01742 tolB translocation pr 99.7 9.1E-15 2E-19 147.4 20.3 219 325-577 199-426 (429)
211 KOG4227 WD40 repeat protein [G 99.7 1.4E-14 3E-19 131.2 19.1 251 327-594 103-385 (609)
212 KOG1538 Uncharacterized conser 99.6 1.4E-14 2.9E-19 139.9 19.5 207 324-543 48-293 (1081)
213 KOG0644 Uncharacterized conser 99.6 3.5E-16 7.5E-21 154.4 8.5 200 373-596 185-426 (1113)
214 PRK11028 6-phosphogluconolacto 99.6 2.1E-13 4.6E-18 133.3 27.6 233 345-596 6-258 (330)
215 KOG4497 Uncharacterized conser 99.6 2.2E-15 4.9E-20 133.3 11.8 219 335-594 14-238 (447)
216 KOG1310 WD40 repeat protein [G 99.6 6.3E-15 1.4E-19 139.1 14.7 217 372-596 44-303 (758)
217 KOG1272 WD40-repeat-containing 99.6 1.4E-15 3.1E-20 140.7 9.3 192 380-596 131-323 (545)
218 KOG2111 Uncharacterized conser 99.6 1E-12 2.3E-17 116.4 26.1 176 351-545 75-258 (346)
219 smart00504 Ubox Modified RING 99.6 6.1E-16 1.3E-20 109.3 4.8 61 38-98 1-61 (63)
220 KOG1963 WD40 repeat protein [G 99.6 1.9E-13 4E-18 136.9 23.6 241 334-595 21-321 (792)
221 KOG0322 G-protein beta subunit 99.6 2.2E-14 4.7E-19 123.4 14.7 207 327-542 54-322 (323)
222 PF08662 eIF2A: Eukaryotic tra 99.6 6E-14 1.3E-18 123.9 18.1 156 425-596 9-179 (194)
223 TIGR00599 rad18 DNA repair pro 99.6 1.2E-15 2.7E-20 144.4 7.1 88 17-104 5-92 (397)
224 KOG2139 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 124.1 17.4 185 378-584 98-298 (445)
225 KOG1409 Uncharacterized conser 99.6 3.5E-13 7.7E-18 120.4 19.6 212 326-544 21-271 (404)
226 PF04564 U-box: U-box domain; 99.5 5.1E-15 1.1E-19 106.4 4.7 68 36-103 2-70 (73)
227 PRK05137 tolB translocation pr 99.5 3.4E-12 7.3E-17 129.3 26.6 214 351-596 182-412 (435)
228 PRK05137 tolB translocation pr 99.5 1.2E-12 2.5E-17 132.7 23.1 204 325-547 197-416 (435)
229 PRK03629 tolB translocation pr 99.5 4.7E-12 1E-16 127.4 26.6 213 351-595 179-405 (429)
230 KOG1354 Serine/threonine prote 99.5 3.7E-13 8.1E-18 120.2 15.9 260 327-596 23-359 (433)
231 KOG2315 Predicted translation 99.5 2E-12 4.4E-17 123.2 21.8 239 329-596 34-390 (566)
232 PRK04922 tolB translocation pr 99.5 2.3E-12 4.9E-17 130.4 23.6 214 351-595 184-410 (433)
233 KOG4497 Uncharacterized conser 99.5 8.9E-13 1.9E-17 117.1 17.6 246 328-596 47-391 (447)
234 PRK04922 tolB translocation pr 99.5 1.6E-12 3.4E-17 131.5 21.6 220 325-576 199-432 (433)
235 PRK02889 tolB translocation pr 99.5 3.5E-12 7.7E-17 128.5 23.8 205 351-587 176-391 (427)
236 PRK03629 tolB translocation pr 99.5 3.4E-12 7.4E-17 128.4 23.4 220 326-576 195-427 (429)
237 PRK02889 tolB translocation pr 99.5 1.8E-12 4E-17 130.5 20.9 221 326-577 192-425 (427)
238 KOG4367 Predicted Zn-finger pr 99.5 3E-13 6.5E-18 123.9 13.4 179 35-213 1-342 (699)
239 PF02239 Cytochrom_D1: Cytochr 99.5 5.4E-12 1.2E-16 122.9 22.6 238 333-597 40-348 (369)
240 KOG0287 Postreplication repair 99.5 9.9E-15 2.1E-19 129.1 2.8 74 31-104 16-89 (442)
241 PF14835 zf-RING_6: zf-RING of 99.5 4.8E-15 1E-19 97.5 0.4 61 35-97 4-65 (65)
242 KOG2394 WD40 protein DMR-N9 [G 99.5 1.3E-12 2.9E-17 123.4 16.7 226 331-596 125-362 (636)
243 PF08662 eIF2A: Eukaryotic tra 99.5 6.5E-12 1.4E-16 111.0 18.9 158 334-509 10-186 (194)
244 PLN03208 E3 ubiquitin-protein 99.5 3.5E-14 7.6E-19 118.6 3.6 57 34-90 14-86 (193)
245 KOG2177 Predicted E3 ubiquitin 99.5 4.8E-13 1E-17 133.9 12.2 108 30-141 5-112 (386)
246 KOG1240 Protein kinase contain 99.4 4.3E-12 9.4E-17 131.3 18.8 206 374-597 1044-1274(1431)
247 KOG2321 WD40 repeat protein [G 99.4 3.9E-12 8.4E-17 121.3 16.9 203 373-595 46-301 (703)
248 KOG1064 RAVE (regulator of V-A 99.4 8.4E-13 1.8E-17 141.0 13.3 201 327-554 2206-2409(2439)
249 PF13923 zf-C3HC4_2: Zinc fing 99.4 4.6E-14 1E-18 87.6 2.3 38 41-78 1-39 (39)
250 KOG0280 Uncharacterized conser 99.4 4.9E-12 1.1E-16 110.9 15.4 201 332-545 124-335 (339)
251 TIGR02800 propeller_TolB tol-p 99.4 7.4E-11 1.6E-15 119.8 25.7 206 351-588 170-386 (417)
252 PLN02919 haloacid dehalogenase 99.4 2.1E-10 4.6E-15 126.5 29.9 255 332-597 570-889 (1057)
253 KOG0280 Uncharacterized conser 99.4 3.3E-11 7.1E-16 105.8 18.2 249 329-595 69-332 (339)
254 KOG1334 WD40 repeat protein [G 99.4 4.4E-12 9.5E-17 118.6 13.6 222 373-596 137-424 (559)
255 KOG0974 WD-repeat protein WDR6 99.4 2.3E-11 5E-16 124.3 18.7 194 380-596 89-288 (967)
256 KOG4547 WD40 repeat-containing 99.3 2.4E-10 5.1E-15 110.2 22.4 192 338-544 2-221 (541)
257 KOG4547 WD40 repeat-containing 99.3 6.3E-11 1.4E-15 114.1 18.2 186 390-596 4-220 (541)
258 TIGR02800 propeller_TolB tol-p 99.3 1.5E-10 3.2E-15 117.6 22.2 199 325-542 185-396 (417)
259 KOG0974 WD-repeat protein WDR6 99.3 2.1E-11 4.7E-16 124.5 15.5 199 332-544 90-289 (967)
260 PRK00178 tolB translocation pr 99.3 5.3E-10 1.1E-14 113.6 25.9 212 352-595 180-405 (430)
261 PF13920 zf-C3HC4_3: Zinc fing 99.3 6E-13 1.3E-17 88.0 2.3 47 37-83 1-48 (50)
262 PRK04792 tolB translocation pr 99.3 2.5E-10 5.4E-15 115.4 22.2 219 326-576 214-446 (448)
263 PF10282 Lactonase: Lactonase, 99.3 2.1E-09 4.6E-14 105.2 28.0 246 330-596 37-322 (345)
264 PRK01029 tolB translocation pr 99.3 6.8E-10 1.5E-14 111.3 24.7 223 328-578 183-426 (428)
265 PRK01029 tolB translocation pr 99.3 9.7E-10 2.1E-14 110.2 25.5 221 351-596 165-403 (428)
266 PF13445 zf-RING_UBOX: RING-ty 99.3 6.2E-13 1.3E-17 82.6 1.6 35 41-76 1-43 (43)
267 KOG0320 Predicted E3 ubiquitin 99.3 1.5E-12 3.3E-17 105.0 4.1 51 39-89 132-184 (187)
268 KOG0309 Conserved WD40 repeat- 99.3 1.6E-11 3.4E-16 120.5 11.2 241 332-596 70-339 (1081)
269 COG5432 RAD18 RING-finger-cont 99.3 1.5E-12 3.2E-17 112.9 3.5 78 25-102 12-89 (391)
270 PRK00178 tolB translocation pr 99.3 5.7E-10 1.2E-14 113.4 23.0 220 325-576 194-427 (430)
271 PF13639 zf-RING_2: Ring finge 99.3 6.1E-13 1.3E-17 85.4 0.8 40 40-79 2-44 (44)
272 PF00097 zf-C3HC4: Zinc finger 99.3 1.7E-12 3.6E-17 82.2 2.4 38 41-78 1-41 (41)
273 PRK04792 tolB translocation pr 99.3 1.3E-09 2.8E-14 110.3 24.6 212 352-595 199-424 (448)
274 PF02239 Cytochrom_D1: Cytochr 99.3 2.6E-09 5.6E-14 104.3 25.5 192 342-551 6-210 (369)
275 COG5354 Uncharacterized protei 99.3 3.8E-10 8.2E-15 106.7 18.3 241 328-596 31-395 (561)
276 KOG4532 WD40-like repeat conta 99.3 1.4E-09 3.1E-14 94.4 20.1 238 333-587 71-323 (344)
277 KOG1354 Serine/threonine prote 99.2 1.7E-10 3.8E-15 103.5 14.2 255 329-593 84-431 (433)
278 KOG0309 Conserved WD40 repeat- 99.2 9E-11 2E-15 115.3 12.7 227 328-579 23-258 (1081)
279 TIGR02658 TTQ_MADH_Hv methylam 99.2 7.9E-09 1.7E-13 98.3 25.3 236 337-597 53-331 (352)
280 PHA02929 N1R/p28-like protein; 99.2 5.9E-12 1.3E-16 111.0 3.6 50 34-83 170-227 (238)
281 COG5170 CDC55 Serine/threonine 99.2 3E-10 6.5E-15 100.5 14.1 258 328-595 25-366 (460)
282 KOG1064 RAVE (regulator of V-A 99.2 9.7E-11 2.1E-15 125.7 12.9 187 376-597 2206-2399(2439)
283 KOG1912 WD40 repeat protein [G 99.2 1.8E-09 3.9E-14 107.1 20.6 99 447-546 443-554 (1062)
284 KOG2315 Predicted translation 99.2 2.8E-09 6.1E-14 102.2 21.0 207 328-553 164-399 (566)
285 KOG2314 Translation initiation 99.2 3.2E-09 7E-14 101.4 20.7 237 333-595 214-572 (698)
286 COG2706 3-carboxymuconate cycl 99.2 4.3E-08 9.4E-13 89.6 26.5 233 350-597 15-275 (346)
287 PF10282 Lactonase: Lactonase, 99.2 5.5E-08 1.2E-12 95.2 28.1 238 344-596 2-275 (345)
288 KOG3914 WD repeat protein WDR4 99.1 4.7E-10 1E-14 103.2 12.3 164 332-510 65-232 (390)
289 KOG4190 Uncharacterized conser 99.1 1.1E-10 2.5E-15 110.9 8.6 222 320-552 726-957 (1034)
290 KOG2041 WD40 repeat protein [G 99.1 7E-09 1.5E-13 102.0 21.0 253 328-597 13-338 (1189)
291 PF14634 zf-RING_5: zinc-RING 99.1 3.2E-11 7E-16 77.0 2.7 41 40-80 1-44 (44)
292 TIGR00570 cdk7 CDK-activating 99.1 1.6E-09 3.4E-14 98.5 14.5 56 38-93 3-64 (309)
293 KOG0823 Predicted E3 ubiquitin 99.1 5.9E-11 1.3E-15 101.1 4.9 54 36-89 45-101 (230)
294 KOG0317 Predicted E3 ubiquitin 99.1 6.2E-11 1.3E-15 104.2 4.2 59 29-87 229-288 (293)
295 KOG2695 WD40 repeat protein [G 99.1 4.4E-10 9.5E-15 101.0 8.5 175 384-576 217-402 (425)
296 KOG1409 Uncharacterized conser 99.1 8.9E-09 1.9E-13 92.8 16.5 162 328-501 67-270 (404)
297 cd00162 RING RING-finger (Real 99.1 9.6E-11 2.1E-15 76.6 2.9 42 40-81 1-44 (45)
298 COG4946 Uncharacterized protei 99.1 5.4E-08 1.2E-12 91.5 21.5 220 339-583 276-505 (668)
299 PF08450 SGL: SMP-30/Gluconola 99.0 2.9E-07 6.3E-12 85.8 26.6 223 334-584 4-243 (246)
300 PHA02926 zinc finger-like prot 99.0 1.1E-10 2.3E-15 98.4 3.0 54 30-83 162-230 (242)
301 KOG4190 Uncharacterized conser 99.0 3.8E-10 8.2E-15 107.4 6.8 166 375-552 732-915 (1034)
302 PLN02919 haloacid dehalogenase 99.0 4.5E-08 9.7E-13 108.4 23.7 209 331-547 625-892 (1057)
303 COG2706 3-carboxymuconate cycl 99.0 9.1E-07 2E-11 81.1 26.6 252 325-596 35-321 (346)
304 KOG1832 HIV-1 Vpr-binding prot 99.0 4.4E-10 9.5E-15 112.8 5.7 213 327-583 1099-1318(1516)
305 smart00184 RING Ring finger. E 99.0 3.4E-10 7.5E-15 71.3 2.7 38 41-78 1-39 (39)
306 PF15492 Nbas_N: Neuroblastoma 99.0 2.7E-07 5.9E-12 81.9 21.5 203 332-554 46-270 (282)
307 KOG4714 Nucleoporin [Nuclear s 99.0 1.3E-08 2.8E-13 88.2 12.9 149 340-502 100-255 (319)
308 PF04762 IKI3: IKI3 family; I 99.0 2.3E-07 5E-12 100.8 25.7 257 329-596 120-456 (928)
309 PRK04043 tolB translocation pr 98.9 6.9E-07 1.5E-11 89.1 26.5 182 380-585 189-386 (419)
310 PF04762 IKI3: IKI3 family; I 98.9 2E-07 4.4E-12 101.3 24.1 244 327-595 73-378 (928)
311 COG4946 Uncharacterized protei 98.9 4.7E-07 1E-11 85.4 22.6 142 327-483 357-499 (668)
312 KOG2164 Predicted E3 ubiquitin 98.9 4.5E-10 9.8E-15 107.0 1.9 56 38-93 186-246 (513)
313 KOG0882 Cyclophilin-related pe 98.9 5.8E-08 1.3E-12 90.7 15.1 259 325-597 5-306 (558)
314 KOG1275 PAB-dependent poly(A) 98.9 5.3E-08 1.2E-12 98.8 15.4 187 340-541 146-340 (1118)
315 KOG2695 WD40 repeat protein [G 98.9 8.7E-09 1.9E-13 92.9 8.8 157 335-511 217-386 (425)
316 KOG4532 WD40-like repeat conta 98.9 7.5E-07 1.6E-11 77.9 19.9 190 391-596 84-282 (344)
317 KOG3914 WD repeat protein WDR4 98.9 2.7E-08 5.9E-13 91.8 11.6 164 382-555 66-235 (390)
318 PF07433 DUF1513: Protein of u 98.8 6.4E-06 1.4E-10 75.8 26.6 230 332-586 7-276 (305)
319 PRK04043 tolB translocation pr 98.8 7.6E-07 1.7E-11 88.8 22.5 195 330-544 188-401 (419)
320 KOG1912 WD40 repeat protein [G 98.8 3.7E-07 8.1E-12 91.1 19.2 237 331-595 17-303 (1062)
321 PF12678 zf-rbx1: RING-H2 zinc 98.8 2.9E-09 6.2E-14 76.3 3.1 40 40-79 21-73 (73)
322 KOG1832 HIV-1 Vpr-binding prot 98.8 5.9E-09 1.3E-13 104.9 5.7 188 376-597 1099-1292(1516)
323 KOG0978 E3 ubiquitin ligase in 98.8 1.6E-09 3.5E-14 109.1 1.1 57 33-89 638-695 (698)
324 COG5170 CDC55 Serine/threonine 98.8 1.9E-07 4.1E-12 83.1 13.0 208 378-596 26-309 (460)
325 TIGR03300 assembly_YfgL outer 98.7 2.3E-06 5E-11 85.5 22.5 219 340-596 104-338 (377)
326 KOG2660 Locus-specific chromos 98.7 4.8E-09 1E-13 94.4 2.7 68 33-100 10-82 (331)
327 COG5354 Uncharacterized protei 98.7 2.2E-06 4.8E-11 81.8 20.1 217 330-587 174-420 (561)
328 COG5574 PEX10 RING-finger-cont 98.7 3.9E-09 8.4E-14 91.7 1.8 49 38-86 215-265 (271)
329 KOG1275 PAB-dependent poly(A) 98.7 2.9E-07 6.3E-12 93.6 15.0 183 390-594 146-340 (1118)
330 TIGR03300 assembly_YfgL outer 98.7 7E-06 1.5E-10 82.0 24.1 218 340-596 64-297 (377)
331 PF15492 Nbas_N: Neuroblastoma 98.7 1.4E-05 3E-10 71.3 22.4 229 335-596 3-259 (282)
332 KOG4714 Nucleoporin [Nuclear s 98.7 1.6E-07 3.4E-12 81.6 9.8 196 381-596 39-254 (319)
333 PF07433 DUF1513: Protein of u 98.7 1.3E-05 2.8E-10 73.8 22.7 208 381-597 7-248 (305)
334 KOG2041 WD40 repeat protein [G 98.7 2.2E-07 4.8E-12 91.8 11.5 158 376-544 12-187 (1189)
335 KOG0311 Predicted E3 ubiquitin 98.6 4.2E-09 9.1E-14 95.2 -0.5 60 31-90 36-98 (381)
336 PF13360 PQQ_2: PQQ-like domai 98.6 1.7E-05 3.6E-10 73.7 23.3 180 390-597 35-231 (238)
337 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.7E-12 59.2 5.3 39 503-541 1-39 (39)
338 TIGR02658 TTQ_MADH_Hv methylam 98.6 7.7E-05 1.7E-09 71.5 26.5 223 351-597 27-288 (352)
339 KOG2066 Vacuolar assembly/sort 98.6 1.5E-06 3.3E-11 87.5 15.5 187 378-596 39-233 (846)
340 PF08450 SGL: SMP-30/Gluconola 98.6 2.5E-05 5.4E-10 72.8 22.8 189 383-595 4-212 (246)
341 PF11789 zf-Nse: Zinc-finger o 98.5 5.3E-08 1.1E-12 65.2 2.5 41 37-77 10-53 (57)
342 KOG0882 Cyclophilin-related pe 98.5 1.5E-06 3.2E-11 81.6 12.4 208 377-597 8-232 (558)
343 KOG4159 Predicted E3 ubiquitin 98.5 3.9E-08 8.5E-13 94.0 2.2 51 34-84 80-130 (398)
344 KOG0804 Cytoplasmic Zn-finger 98.5 4.5E-06 9.7E-11 78.5 14.9 51 31-83 168-222 (493)
345 KOG1008 Uncharacterized conser 98.5 8.8E-08 1.9E-12 93.6 3.0 206 378-596 56-275 (783)
346 KOG1920 IkappaB kinase complex 98.4 2.8E-05 6.1E-10 82.3 20.9 238 329-596 68-322 (1265)
347 KOG2066 Vacuolar assembly/sort 98.4 1.7E-05 3.6E-10 80.3 18.4 141 340-502 82-234 (846)
348 KOG1008 Uncharacterized conser 98.4 1.8E-07 4E-12 91.4 4.3 199 330-544 57-276 (783)
349 KOG4649 PQQ (pyrrolo-quinoline 98.4 9.4E-05 2E-09 64.9 19.8 70 340-418 62-132 (354)
350 KOG1645 RING-finger-containing 98.4 7.6E-06 1.6E-10 75.9 14.0 99 373-479 188-288 (463)
351 KOG2114 Vacuolar assembly/sort 98.4 2.6E-05 5.6E-10 79.6 18.6 195 386-596 31-243 (933)
352 COG5243 HRD1 HRD ubiquitin lig 98.4 1.7E-07 3.7E-12 85.1 2.8 48 36-83 285-345 (491)
353 KOG4628 Predicted E3 ubiquitin 98.4 1.7E-07 3.8E-12 86.9 2.4 46 39-84 230-279 (348)
354 KOG4185 Predicted E3 ubiquitin 98.4 5.7E-06 1.2E-10 79.1 12.9 63 38-100 3-77 (296)
355 PF06977 SdiA-regulated: SdiA- 98.3 0.0003 6.5E-09 64.1 22.8 203 378-593 21-247 (248)
356 PF00400 WD40: WD domain, G-be 98.3 1E-06 2.2E-11 55.0 4.9 37 463-499 2-39 (39)
357 PF13360 PQQ_2: PQQ-like domai 98.3 8E-05 1.7E-09 69.1 19.6 184 340-548 35-235 (238)
358 PF08553 VID27: VID27 cytoplas 98.3 3.6E-05 7.8E-10 80.7 18.5 145 390-543 492-647 (794)
359 PF11768 DUF3312: Protein of u 98.3 3E-05 6.6E-10 76.3 16.4 122 422-545 206-331 (545)
360 PRK11138 outer membrane biogen 98.3 0.00014 3.1E-09 73.0 22.0 220 341-596 120-353 (394)
361 PF11768 DUF3312: Protein of u 98.3 2.2E-05 4.8E-10 77.2 15.2 110 473-596 206-329 (545)
362 KOG2114 Vacuolar assembly/sort 98.3 9.1E-05 2E-09 75.7 19.7 199 336-552 30-252 (933)
363 KOG0827 Predicted E3 ubiquitin 98.3 1.6E-05 3.4E-10 73.2 12.5 61 38-98 4-71 (465)
364 COG5540 RING-finger-containing 98.3 4E-07 8.7E-12 80.4 2.3 46 39-84 324-373 (374)
365 PF12861 zf-Apc11: Anaphase-pr 98.3 6.8E-07 1.5E-11 64.0 2.8 49 36-84 19-83 (85)
366 PRK02888 nitrous-oxide reducta 98.3 0.00013 2.9E-09 73.7 19.9 174 399-596 213-404 (635)
367 COG5152 Uncharacterized conser 98.2 4.6E-07 1E-11 74.5 2.1 47 38-84 196-242 (259)
368 KOG0824 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 80.1 2.1 48 38-85 7-55 (324)
369 KOG3617 WD40 and TPR repeat-co 98.2 2.6E-05 5.7E-10 79.1 14.0 109 333-459 19-131 (1416)
370 KOG2314 Translation initiation 98.2 2.7E-05 5.9E-10 75.3 13.1 136 424-583 213-363 (698)
371 KOG2395 Protein involved in va 98.2 7.6E-05 1.7E-09 72.1 15.4 151 390-543 344-500 (644)
372 PF08596 Lgl_C: Lethal giant l 98.2 0.00055 1.2E-08 67.4 21.7 240 331-586 3-326 (395)
373 KOG0802 E3 ubiquitin ligase [P 98.1 6.9E-07 1.5E-11 92.1 1.4 47 37-83 290-341 (543)
374 KOG1813 Predicted E3 ubiquitin 98.1 9.1E-07 2E-11 78.4 1.1 45 39-83 242-286 (313)
375 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0011 2.5E-08 66.1 23.2 207 335-578 34-271 (410)
376 PRK11138 outer membrane biogen 98.1 0.00054 1.2E-08 68.8 21.2 200 340-553 68-284 (394)
377 COG3386 Gluconolactonase [Carb 98.1 0.0014 3E-08 62.1 22.2 221 336-583 31-272 (307)
378 KOG1920 IkappaB kinase complex 98.1 0.0008 1.7E-08 71.8 22.0 206 328-542 108-364 (1265)
379 KOG3617 WD40 and TPR repeat-co 98.1 5.6E-05 1.2E-09 76.8 13.1 107 383-501 20-131 (1416)
380 PF04053 Coatomer_WDAD: Coatom 98.1 0.00048 1E-08 68.8 19.4 219 329-596 32-262 (443)
381 PF06977 SdiA-regulated: SdiA- 98.1 0.0015 3.2E-08 59.7 20.8 199 324-540 16-247 (248)
382 KOG4172 Predicted E3 ubiquitin 98.0 9E-07 1.9E-11 55.7 -0.1 45 39-83 8-54 (62)
383 COG5222 Uncharacterized conser 98.0 4.6E-06 1E-10 73.5 3.9 57 39-95 275-334 (427)
384 KOG0297 TNF receptor-associate 98.0 4.5E-06 9.8E-11 81.7 4.2 58 32-89 15-73 (391)
385 PF02897 Peptidase_S9_N: Proly 97.9 0.011 2.3E-07 60.0 27.2 244 331-596 125-404 (414)
386 PF04053 Coatomer_WDAD: Coatom 97.9 0.00032 6.8E-09 70.0 15.2 145 417-595 28-172 (443)
387 KOG2879 Predicted E3 ubiquitin 97.9 9.3E-06 2E-10 71.3 3.6 48 36-83 237-287 (298)
388 KOG4441 Proteins containing BT 97.9 0.00095 2.1E-08 69.5 18.8 223 340-589 284-534 (571)
389 COG3391 Uncharacterized conser 97.9 0.0096 2.1E-07 59.1 24.9 239 331-595 32-282 (381)
390 KOG3621 WD40 repeat-containing 97.9 0.0019 4.1E-08 65.1 19.4 157 329-502 33-198 (726)
391 KOG3621 WD40 repeat-containing 97.9 0.0001 2.2E-09 73.8 10.3 117 474-596 35-154 (726)
392 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.012 2.5E-07 52.2 21.2 142 341-501 23-165 (354)
393 PF03178 CPSF_A: CPSF A subuni 97.8 0.012 2.5E-07 57.3 23.7 180 391-592 42-261 (321)
394 COG3391 Uncharacterized conser 97.8 0.01 2.2E-07 59.0 23.3 206 331-554 75-294 (381)
395 PF03178 CPSF_A: CPSF A subuni 97.8 0.0033 7E-08 61.2 19.5 185 401-596 2-202 (321)
396 PF00780 CNH: CNH domain; Int 97.8 0.025 5.3E-07 53.7 24.9 220 339-597 5-256 (275)
397 PF06433 Me-amine-dh_H: Methyl 97.7 0.01 2.2E-07 55.9 20.9 239 333-597 39-321 (342)
398 PRK02888 nitrous-oxide reducta 97.7 0.002 4.4E-08 65.5 17.1 92 451-544 296-405 (635)
399 KOG0826 Predicted E3 ubiquitin 97.7 1.7E-05 3.6E-10 71.6 2.3 72 17-88 278-351 (357)
400 PHA02713 hypothetical protein; 97.7 0.003 6.5E-08 66.0 18.5 188 390-596 303-533 (557)
401 KOG4739 Uncharacterized protei 97.7 0.00066 1.4E-08 59.5 11.3 49 40-90 5-55 (233)
402 COG0823 TolB Periplasmic compo 97.7 0.0035 7.6E-08 62.5 17.9 188 328-532 191-388 (425)
403 KOG4640 Anaphase-promoting com 97.7 0.00022 4.8E-09 70.6 9.0 93 473-576 21-115 (665)
404 KOG1734 Predicted RING-contain 97.6 1E-05 2.3E-10 70.4 -0.1 54 37-90 223-288 (328)
405 PF14583 Pectate_lyase22: Olig 97.6 0.014 3.1E-07 56.0 20.5 139 454-595 217-380 (386)
406 PF08553 VID27: VID27 cytoplas 97.6 0.0043 9.4E-08 65.6 18.7 131 451-595 504-646 (794)
407 KOG1002 Nucleotide excision re 97.6 1.8E-05 3.9E-10 75.7 1.3 53 33-85 531-588 (791)
408 PF05694 SBP56: 56kDa selenium 97.6 0.0025 5.3E-08 61.5 15.2 273 309-584 49-391 (461)
409 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.033 7.2E-07 54.9 23.8 235 338-595 1-312 (353)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.024 5.2E-07 55.8 21.9 96 334-430 6-117 (415)
411 KOG2395 Protein involved in va 97.6 0.003 6.5E-08 61.6 14.9 129 451-594 356-498 (644)
412 COG0823 TolB Periplasmic compo 97.5 0.013 2.9E-07 58.4 19.6 160 378-546 192-361 (425)
413 KOG1039 Predicted E3 ubiquitin 97.5 5.5E-05 1.2E-09 71.2 2.5 49 36-84 159-222 (344)
414 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0037 8.1E-08 48.1 11.9 100 381-496 2-109 (111)
415 KOG0825 PHD Zn-finger protein 97.5 4E-05 8.7E-10 77.0 1.5 47 38-84 123-172 (1134)
416 KOG1814 Predicted E3 ubiquitin 97.5 0.00059 1.3E-08 64.0 8.9 43 39-81 185-238 (445)
417 PF04841 Vps16_N: Vps16, N-ter 97.5 0.016 3.4E-07 58.1 19.8 167 402-595 62-245 (410)
418 cd00216 PQQ_DH Dehydrogenases 97.5 0.018 3.9E-07 59.4 20.6 239 342-597 111-425 (488)
419 COG5194 APC11 Component of SCF 97.5 6.5E-05 1.4E-09 51.9 1.7 46 40-85 22-83 (88)
420 PF07995 GSDH: Glucose / Sorbo 97.4 0.13 2.8E-06 50.0 25.5 248 331-591 3-330 (331)
421 KOG4499 Ca2+-binding protein R 97.4 0.024 5.2E-07 49.5 17.4 147 422-583 109-271 (310)
422 COG3386 Gluconolactonase [Carb 97.4 0.015 3.3E-07 55.1 17.9 191 385-595 31-242 (307)
423 KOG3039 Uncharacterized conser 97.4 0.00011 2.3E-09 63.4 2.8 53 37-89 220-276 (303)
424 KOG2444 WD40 repeat protein [G 97.4 0.00025 5.5E-09 61.4 5.1 134 450-596 39-177 (238)
425 PF14570 zf-RING_4: RING/Ubox 97.3 0.00017 3.8E-09 45.5 2.5 42 41-82 1-47 (48)
426 PRK10115 protease 2; Provision 97.3 0.35 7.5E-06 52.2 30.0 198 330-542 127-343 (686)
427 KOG3161 Predicted E3 ubiquitin 97.3 0.00022 4.8E-09 70.3 4.3 62 34-97 7-76 (861)
428 KOG4275 Predicted E3 ubiquitin 97.3 3.3E-05 7.2E-10 68.3 -1.5 44 35-82 297-341 (350)
429 KOG4441 Proteins containing BT 97.3 0.011 2.3E-07 61.8 16.4 201 333-547 326-550 (571)
430 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.047 1E-06 53.8 20.3 236 329-584 42-345 (353)
431 KOG2079 Vacuolar assembly/sort 97.3 0.0031 6.7E-08 66.7 12.1 97 340-444 98-197 (1206)
432 smart00320 WD40 WD40 repeats. 97.3 0.00061 1.3E-08 41.6 4.7 38 504-541 3-40 (40)
433 PHA02713 hypothetical protein; 97.2 0.0064 1.4E-07 63.6 14.5 195 340-548 303-538 (557)
434 PF14447 Prok-RING_4: Prokaryo 97.2 0.00015 3.2E-09 46.8 1.4 49 36-86 5-53 (55)
435 COG3490 Uncharacterized protei 97.2 0.083 1.8E-06 47.8 18.5 213 332-553 70-320 (366)
436 PF05096 Glu_cyclase_2: Glutam 97.2 0.17 3.7E-06 46.2 20.5 193 379-585 45-249 (264)
437 smart00744 RINGv The RING-vari 97.2 0.00029 6.2E-09 45.7 2.2 40 40-79 1-49 (49)
438 PF11793 FANCL_C: FANCL C-term 97.2 7E-05 1.5E-09 53.0 -0.7 48 37-84 1-67 (70)
439 KOG4640 Anaphase-promoting com 97.1 0.0022 4.8E-08 63.8 8.8 93 329-431 20-115 (665)
440 KOG2444 WD40 repeat protein [G 97.1 0.00048 1E-08 59.7 3.6 107 438-544 67-178 (238)
441 KOG2079 Vacuolar assembly/sort 97.0 0.0028 6.1E-08 67.0 9.2 102 484-595 100-202 (1206)
442 COG3204 Uncharacterized protei 97.0 0.16 3.4E-06 46.5 18.6 191 325-531 81-301 (316)
443 PHA03098 kelch-like protein; P 97.0 0.025 5.3E-07 59.5 16.3 188 390-596 294-511 (534)
444 COG3490 Uncharacterized protei 97.0 0.13 2.7E-06 46.7 17.8 209 382-597 71-311 (366)
445 TIGR03118 PEPCTERM_chp_1 conse 97.0 0.31 6.7E-06 45.0 22.2 230 331-576 24-307 (336)
446 KOG1785 Tyrosine kinase negati 97.0 0.0003 6.5E-09 65.2 1.3 47 40-86 371-419 (563)
447 KOG1493 Anaphase-promoting com 97.0 0.00032 7E-09 48.1 1.0 45 40-84 22-82 (84)
448 smart00320 WD40 WD40 repeats. 96.9 0.0013 2.8E-08 40.0 3.9 30 565-594 11-40 (40)
449 PF06433 Me-amine-dh_H: Methyl 96.9 0.15 3.2E-06 48.3 18.7 199 334-552 99-329 (342)
450 KOG4265 Predicted E3 ubiquitin 96.9 0.00044 9.5E-09 64.0 2.1 46 38-83 290-336 (349)
451 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.039 8.4E-07 42.6 12.2 99 332-445 2-107 (111)
452 cd00216 PQQ_DH Dehydrogenases 96.9 0.15 3.2E-06 52.7 20.7 153 391-553 61-274 (488)
453 KOG1571 Predicted E3 ubiquitin 96.9 0.00041 8.9E-09 64.2 1.7 48 33-83 300-347 (355)
454 PF00780 CNH: CNH domain; Int 96.9 0.26 5.6E-06 46.7 20.7 147 390-551 6-173 (275)
455 PHA03098 kelch-like protein; P 96.9 0.063 1.4E-06 56.5 17.8 151 390-547 342-515 (534)
456 PRK13616 lipoprotein LpqB; Pro 96.8 0.13 2.7E-06 54.0 19.3 188 328-538 348-563 (591)
457 KOG3800 Predicted E3 ubiquitin 96.8 0.0061 1.3E-07 54.7 8.2 58 40-97 2-65 (300)
458 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.4 8.7E-06 49.9 22.6 61 493-554 441-501 (527)
459 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.0011 2.5E-08 61.4 3.1 54 35-89 110-167 (260)
460 KOG1001 Helicase-like transcri 96.7 0.00058 1.3E-08 71.3 1.3 47 39-86 455-503 (674)
461 KOG4692 Predicted E3 ubiquitin 96.7 0.0008 1.7E-08 61.4 2.0 49 35-83 419-467 (489)
462 PF05096 Glu_cyclase_2: Glutam 96.7 0.49 1.1E-05 43.2 21.8 184 328-532 43-249 (264)
463 KOG0828 Predicted E3 ubiquitin 96.7 0.00095 2.1E-08 63.9 2.3 49 35-83 568-634 (636)
464 PF08596 Lgl_C: Lethal giant l 96.7 0.023 5E-07 56.1 12.0 147 380-543 3-173 (395)
465 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.75 1.6E-05 47.9 23.1 158 342-506 121-338 (527)
466 PRK13616 lipoprotein LpqB; Pro 96.6 0.081 1.8E-06 55.4 16.1 178 400-595 328-524 (591)
467 COG3204 Uncharacterized protei 96.6 0.47 1E-05 43.6 18.4 194 378-583 85-300 (316)
468 PHA02790 Kelch-like protein; P 96.6 0.12 2.5E-06 53.4 16.7 182 390-596 271-470 (480)
469 PF05694 SBP56: 56kDa selenium 96.5 0.15 3.2E-06 49.7 15.8 203 391-596 87-342 (461)
470 COG5167 VID27 Protein involved 96.5 0.042 9E-07 53.7 12.1 150 390-543 478-632 (776)
471 PHA02790 Kelch-like protein; P 96.5 0.13 2.8E-06 53.1 16.5 143 390-545 318-472 (480)
472 KOG3630 Nuclear pore complex, 96.5 0.038 8.3E-07 59.2 12.4 123 452-583 125-260 (1405)
473 PF02897 Peptidase_S9_N: Proly 96.4 1.4 3E-05 44.7 24.7 165 381-547 126-313 (414)
474 PF05290 Baculo_IE-1: Baculovi 96.2 0.0032 7E-08 49.1 2.4 48 38-85 80-134 (140)
475 COG3823 Glutamine cyclotransfe 96.2 0.15 3.3E-06 43.9 12.4 184 390-584 55-247 (262)
476 PF07800 DUF1644: Protein of u 96.2 0.0042 9.2E-08 50.3 2.8 52 37-88 1-96 (162)
477 KOG3039 Uncharacterized conser 96.2 0.0034 7.3E-08 54.5 2.4 37 33-69 38-74 (303)
478 PF12894 Apc4_WD40: Anaphase-p 96.1 0.022 4.8E-07 36.5 5.4 32 328-359 10-41 (47)
479 PF12894 Apc4_WD40: Anaphase-p 96.0 0.021 4.5E-07 36.6 5.1 31 566-596 11-41 (47)
480 PF12234 Rav1p_C: RAVE protein 96.0 0.14 3.1E-06 53.0 13.8 103 481-594 38-154 (631)
481 PF15390 DUF4613: Domain of un 96.0 0.21 4.6E-06 50.1 14.1 114 471-594 55-184 (671)
482 KOG4362 Transcriptional regula 96.0 0.0026 5.6E-08 64.9 1.0 58 32-89 15-75 (684)
483 KOG1941 Acetylcholine receptor 95.9 0.0022 4.8E-08 59.5 0.4 44 37-80 364-413 (518)
484 TIGR03074 PQQ_membr_DH membran 95.8 2.8 6E-05 45.6 22.9 242 310-553 160-487 (764)
485 PF14870 PSII_BNR: Photosynthe 95.7 2 4.3E-05 40.8 26.2 233 328-587 15-253 (302)
486 COG5220 TFB3 Cdk activating ki 95.7 0.16 3.4E-06 44.2 10.3 48 37-84 9-65 (314)
487 KOG2280 Vacuolar assembly/sort 95.5 1 2.2E-05 46.8 17.0 181 351-554 64-257 (829)
488 COG5236 Uncharacterized conser 95.5 0.012 2.6E-07 53.8 3.2 55 29-83 52-108 (493)
489 PF10647 Gmad1: Lipoprotein Lp 95.4 1.5 3.3E-05 40.7 16.9 151 423-588 25-187 (253)
490 PF14870 PSII_BNR: Photosynthe 95.3 2.7 5.9E-05 39.9 25.5 190 381-593 106-301 (302)
491 PRK13684 Ycf48-like protein; P 95.3 3.1 6.7E-05 40.5 24.9 153 421-594 172-329 (334)
492 TIGR03118 PEPCTERM_chp_1 conse 95.3 2.5 5.5E-05 39.3 18.7 205 379-596 23-279 (336)
493 KOG2930 SCF ubiquitin ligase, 95.3 0.01 2.2E-07 43.7 1.6 44 39-82 47-107 (114)
494 PLN02153 epithiospecifier prot 95.2 3 6.5E-05 40.9 19.5 152 390-548 32-230 (341)
495 TIGR03074 PQQ_membr_DH membran 95.1 5.7 0.00012 43.3 22.2 195 391-596 194-477 (764)
496 TIGR02604 Piru_Ver_Nterm putat 95.1 0.5 1.1E-05 46.8 13.6 152 422-587 14-204 (367)
497 KOG1897 Damage-specific DNA bi 95.0 6.5 0.00014 42.6 26.3 264 310-596 327-613 (1096)
498 COG5219 Uncharacterized conser 95.0 0.0092 2E-07 62.2 1.0 50 34-83 1465-1523(1525)
499 PLN02193 nitrile-specifier pro 94.8 5.6 0.00012 41.0 24.6 152 390-548 228-415 (470)
500 PF10168 Nup88: Nuclear pore c 94.8 0.38 8.2E-06 51.5 12.4 110 487-596 36-179 (717)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.2e-43 Score=314.65 Aligned_cols=321 Identities=22% Similarity=0.274 Sum_probs=265.8
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHhhhhhhccCccccCcccccCcCCCCcchhhHHHHHHhhhccccceeeeee--------
Q 042883 249 TAARKQRVRAQLNDLKEYYLQKRRQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTQYSRLRVIAEL-------- 320 (597)
Q Consensus 249 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 320 (597)
.+++++|+.+-|........ +... ....+... -.......|+++...+......++.|+-.+....+
T Consensus 71 ~~~RR~RL~~lL~~~~~~l~-~~~~---~d~~~k~~-~e~~~~~~y~~gp~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e 145 (459)
T KOG0272|consen 71 ALARRQRLRELLSVASEDLL-KDKL---EDEVNKKE-DEEDESTWYHEGPVELRVARLWIANYSLERAKLRLQKARERRE 145 (459)
T ss_pred HHHHHHHHHHHHHHhhHhhh-hccc---cccccchh-hhhcccceeccCCHHHHHHHHHHHhccHHHHHHHHHHHHHhhc
Confidence 56777787776665544311 1111 00011111 23445678888888887777666655422211100
Q ss_pred -----------------c----cccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCC
Q 042883 321 -----------------R----HGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRS 379 (597)
Q Consensus 321 -----------------~----~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 379 (597)
. ...-++...+|..+.|++|+..|+||+.+|.++||+.... .......+|..
T Consensus 146 ~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~ 218 (459)
T KOG0272|consen 146 IPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTS 218 (459)
T ss_pred CCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEecccc
Confidence 0 0112356889999999999999999999999999999876 45567778999
Q ss_pred ceeEEEEecC-CCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------
Q 042883 380 KLSCLSWNKY-TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------ 446 (597)
Q Consensus 380 ~i~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------ 446 (597)
.|.++.|+|. ++..+++|+.||++++|++.+..++..+.+|...|..++|+| +|.+|+|++.|.+.
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhH
Confidence 9999999996 377999999999999999998899999999999999999999 99999999999876
Q ss_pred -----------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCe-EEEeeCCCcEEEEEcCC
Q 042883 447 -----------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKE 502 (597)
Q Consensus 447 -----------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~~d~~v~iwd~~~ 502 (597)
|+.|..-+|||+++ +..+..+.+|...|.+|+|+|+|+ |+|||.|++++|||++.
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 78888899999999 889999999999999999999965 89999999999999999
Q ss_pred CcceeeeeCCCCceeEEEEee-cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeE
Q 042883 503 NLPLHTFRGHTNEKNFVGLTV-NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTM 581 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 581 (597)
.+.+.++.+|.+.|+.|.|+| .|.+|++++.|++++||...+..++..+. +|.+.|.+++.+++++++
T Consensus 377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-----------GHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-----------GHEGKVISLDISPDSQAI 445 (459)
T ss_pred cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-----------CCccceEEEEeccCCceE
Confidence 999999999999999999999 58899999999999999999999998886 589999999999999999
Q ss_pred EEecCcccEEEEE
Q 042883 582 LTANRKGAIKVLV 594 (597)
Q Consensus 582 ~s~~~dg~v~iwd 594 (597)
++++.|.++++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 9999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-42 Score=307.85 Aligned_cols=248 Identities=19% Similarity=0.356 Sum_probs=218.9
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.||.++|.|++|+|+|..|++|+.|.++++||+.+. .......+|...|.||+|+| ++..|++|+.||.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-------Tp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~ 180 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-------TPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGS 180 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-------CcceeecCCccEEEEEEECC-CcchhhccccCCe
Confidence 345689999999999999999999999999999999987 33345567999999999999 8999999999999
Q ss_pred EEEEeCCCCeee-eEEeeccceeEEEEeCCC----CCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEE
Q 042883 403 VTIWDVTTSQSV-MEYEEHEKRAWSVDFSCT----EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477 (597)
Q Consensus 403 i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 477 (597)
|++||..+|+.+ ..+.+|...|++++|.|- ...++++++.|| .|+|||+.. +..+..+.+|..+|++
T Consensus 181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg-------~vrIWd~~~-~~~~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG-------SVRIWDTKL-GTCVRTLSGHTASVTC 252 (480)
T ss_pred EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC-------CEEEEEccC-ceEEEEeccCccceEE
Confidence 999999988664 668899999999999872 456788888554 599999987 7889999999999999
Q ss_pred EEecCCCeEEEeeCCCcEEEEEcCCCc-----------------------------------------------------
Q 042883 478 VKFLSNNELASASTDSSLRLWDVKENL----------------------------------------------------- 504 (597)
Q Consensus 478 v~~~~~~~l~s~~~d~~v~iwd~~~~~----------------------------------------------------- 504 (597)
+.|--+++|++||.|++|++|+...|.
T Consensus 253 vrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 253 VRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 999888999999999999999865421
Q ss_pred --------------------------ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCC
Q 042883 505 --------------------------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 505 --------------------------~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
++....+|...|+.+.||||++|||+++.|..|++||-++|+.+.++.
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR------ 406 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR------ 406 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh------
Confidence 222334677889999999999999999999999999999999999887
Q ss_pred CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 559 HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+|-+.|..|+|+.|.++|++|+.|.+++||++.+
T Consensus 407 -----GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 407 -----GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred -----hccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 5799999999999999999999999999999864
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-42 Score=306.02 Aligned_cols=254 Identities=22% Similarity=0.332 Sum_probs=232.5
Q ss_pred cccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC----CCCEEEEe
Q 042883 322 HGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY----TKNLIASS 397 (597)
Q Consensus 322 ~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~----~~~~l~s~ 397 (597)
.....+|...|.|++|+|||+.||+|+.||.|++||..++.. .-....+|...|++++|.|- ....|+++
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~ 223 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASS 223 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc------ccccccCcccceeEEeecccccCCCccceecc
Confidence 344568999999999999999999999999999999988721 22234578999999999872 35689999
Q ss_pred eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-------------------------------
Q 042883 398 DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------- 446 (597)
Q Consensus 398 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------- 446 (597)
+.||.|+|||+..+.++..+.+|+.+|+++.|- +..++++|+.|++|
T Consensus 224 skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~ 301 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV 301 (480)
T ss_pred cCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence 999999999999999999999999999999997 67899999999999
Q ss_pred ----------------------------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-Ce
Q 042883 447 ----------------------------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 447 ----------------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 485 (597)
|+.|+++.+|+.....+++..+.+|..-|+.+.|+|| .+
T Consensus 302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE
Confidence 8889999999998877899999999999999999999 88
Q ss_pred EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCC
Q 042883 486 LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h 565 (597)
++++|.|..|++||.++|+.+.+|.||-..|+.++|+.|.++|++|+.|.++++|++++.+...-++ +|
T Consensus 382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-----------Gh 450 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-----------GH 450 (480)
T ss_pred EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-----------CC
Confidence 9999999999999999999999999999999999999999999999999999999999988876664 57
Q ss_pred CcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 566 SYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
...|.++.|+|||..+++|+.|..+++|.
T Consensus 451 ~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999994
No 4
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-36 Score=327.72 Aligned_cols=351 Identities=46% Similarity=0.810 Sum_probs=269.8
Q ss_pred cchhhHHHHHHHHHhHhhHHHHHHHHhhhhhhc--cC-----------ccc-----cCc--ccccCcCCCC------cch
Q 042883 245 QSGLTAARKQRVRAQLNDLKEYYLQKRRQSTAQ--SH-----------KED-----EGD--LYAVSREGYH------PGL 298 (597)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~-----------~~~-----~~~--~~~~~~~~~~------~~~ 298 (597)
.....+..+.||++.+.+++++|+..+...... .. ... ..+ ........|. ...
T Consensus 373 ~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (793)
T PLN00181 373 TLESTLLESSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLARYYSALSENGRSSEKSSMSNPAKPPDFYINDSRQGGWI 452 (793)
T ss_pred cccccchhhhHHHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 334455668999999999999999877633111 00 000 000 0000000110 112
Q ss_pred hhHHHHHHhhhccccceeeeeeccccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCC
Q 042883 299 EDFRSVLATFTQYSRLRVIAELRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTR 378 (597)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 378 (597)
..|......+..+..+.....+..+.+.+|.+.|++++|+|+|++|++|+.|+.|+||++............+.....+.
T Consensus 453 ~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~ 532 (793)
T PLN00181 453 DPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR 532 (793)
T ss_pred hhhhhhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc
Confidence 23445556666666777666777788889999999999999999999999999999999865311111222333444556
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------ 446 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------ 446 (597)
..+.+++|+|..+.+|++++.||.|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.|+.+
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 78999999986788999999999999999999999999999999999999998678999999999876
Q ss_pred -----------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCC-
Q 042883 447 -----------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE- 502 (597)
Q Consensus 447 -----------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~- 502 (597)
|+.||.|++||++....++..+.+|...|.++.|.+.+.|++++.|++|+|||++.
T Consensus 613 ~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 613 TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 66788999999987444677788999999999998668999999999999999974
Q ss_pred -----CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC--CCCCcCcCCCcceEEEEEc
Q 042883 503 -----NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD--ADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 503 -----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~v~~~ 575 (597)
..++..+.+|...+..++|+|+|.+|++|+.|+.|++|+.....++..+.+... ........|...|.+++|+
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence 357888999999999999999999999999999999999887766544433221 1111123457789999999
Q ss_pred cCCCeEEEecCcccEEEEEe
Q 042883 576 SDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 576 ~~~~~l~s~~~dg~v~iwd~ 595 (597)
|++.+|++|+.||.|+||++
T Consensus 773 ~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 773 GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCeEEEecCCCcEEEEec
Confidence 99999999999999999997
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=267.15 Aligned_cols=246 Identities=20% Similarity=0.267 Sum_probs=218.3
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.+|.+.|+++.|++|+++|++++.||.+.|||..+. .+.....-....|..++|+| +++++++|+.|+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-------nK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-------NKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNK 120 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-------cceeEEecCceeEEEEEECC-CCCeEEecCcCce
Confidence 456699999999999999999999999999999998876 22222223467899999999 8999999999999
Q ss_pred EEEEeCCCC------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceE
Q 042883 403 VTIWDVTTS------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVS 476 (597)
Q Consensus 403 i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 476 (597)
..||++.+. ...+.+.+|.+.+.++.|.+ ...|+|++.| .++.+||+.+ ++.+..|.+|.+.|.
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD-------~TCalWDie~-g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGD-------MTCALWDIET-GQQTQVFHGHTGDVM 190 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCC-------ceEEEEEccc-ceEEEEecCCcccEE
Confidence 999999754 34567889999999999985 5667777754 4599999998 889999999999999
Q ss_pred EEEecC-C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 477 YVKFLS-N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 477 ~v~~~~-~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
+++++| + +.+++|+-|+..+|||+|.+..+++|.+|.+.|++|.|.|+|.-+++|+.|++.++||++....+..+...
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC
Confidence 999999 5 89999999999999999999999999999999999999999999999999999999999999888877643
Q ss_pred CCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 555 SDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 555 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
. -..+|++++||..|++|++|..|.++.|||.
T Consensus 271 ~---------~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 271 S---------IICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred c---------ccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 2 2678999999999999999999999999995
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-38 Score=310.84 Aligned_cols=249 Identities=19% Similarity=0.355 Sum_probs=226.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCc----------cCC--------------ccCCCCceEecCCCcee
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVV----------NEP--------------RDVHYPMVEMPTRSKLS 382 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~----------~~~--------------~~~~~~~~~~~~~~~i~ 382 (597)
.....++|..|++|+..||.|-.|..|++|.+...+ ... ..........+|.++|+
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 456689999999999999999999999999987421 000 01112234678999999
Q ss_pred EEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC
Q 042883 383 CLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462 (597)
Q Consensus 383 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~ 462 (597)
++.|+| +.++|++++.|++|++|.+.+...+-.+.+|..+|+++.|+| .|.+|||+|.|++ .++|.... .
T Consensus 456 g~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~t-------ArLWs~d~-~ 525 (707)
T KOG0263|consen 456 GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQT-------ARLWSTDH-N 525 (707)
T ss_pred eeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCce-------eeeeeccc-C
Confidence 999999 899999999999999999999999999999999999999999 8999999997776 89999987 8
Q ss_pred cceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 463 QPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 463 ~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
.+++.+.+|.+.|.++.|+|+ +++++||.|.+|++||+.+|..++.|.||.++|.+++|||+|++|++|+.||.|.+||
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 899999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 542 KAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+.+++++..+. +|.+.|.++.|+.+|..||+||.|++|++||+.
T Consensus 606 l~~~~~v~~l~-----------~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 606 LANGSLVKQLK-----------GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCCcchhhhh-----------cccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 99999988876 469999999999999999999999999999974
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-36 Score=258.70 Aligned_cols=249 Identities=22% Similarity=0.319 Sum_probs=215.6
Q ss_pred ccccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 323 GDLFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+.+.+|.+.|+.++..+. .+.+++++.|.++.+|++...... .........+|...|..++.++ ++++.+++++|+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~--~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~ 85 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK--YGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDG 85 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc--cCceeeeeeccceEecceEEcc-CCceEEeccccc
Confidence 456789999999999986 578899999999999999765111 1122334557889999999999 899999999999
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--CCCceEEEE
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--HKKAVSYVK 479 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~v~ 479 (597)
.+++||+.+++..+.|.+|...|.+++|++ ++..+++|+.|.+ |.+|++.. ....++.. +.+.|+++.
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkT-------iklwnt~g--~ck~t~~~~~~~~WVscvr 155 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKT-------IKLWNTLG--VCKYTIHEDSHREWVSCVR 155 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcce-------eeeeeecc--cEEEEEecCCCcCcEEEEE
Confidence 999999999999999999999999999999 8899999997666 99999985 34444333 378999999
Q ss_pred ecCC---CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 480 FLSN---NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 480 ~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
|+|+ .+|+++|.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.+..+.
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---- 231 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---- 231 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----
Confidence 9998 569999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
|...|.+++|+|+..+|+.+... .|+|||+++
T Consensus 232 --------a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~ 263 (315)
T KOG0279|consen 232 --------AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLES 263 (315)
T ss_pred --------CCCeEeeEEecCCceeEeeccCC-ceEEEeccc
Confidence 48899999999998777776654 599999874
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-35 Score=253.73 Aligned_cols=253 Identities=17% Similarity=0.277 Sum_probs=213.3
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.||...|..+..++||++.++++.|+++++||+.++ .......+|...|.+++|++ ++..+++|+.|.+|
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-------ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTI 129 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCC-------cEEEEEEecCCceEEEEecC-CCceeecCCCccee
Confidence 34589999999999999999999999999999999987 45567778999999999999 78999999999999
Q ss_pred EEEeCCCCeeeeEEeec-cceeEEEEeCCCC-CceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEec
Q 042883 404 TIWDVTTSQSVMEYEEH-EKRAWSVDFSCTE-PSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 481 (597)
++|++............ .+.|.++.|+|+. ..+|+++|.|+ +|++||+++ .+....+.+|.+.++.++++
T Consensus 130 klwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-------tvKvWnl~~-~~l~~~~~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-------TVKVWNLRN-CQLRTTFIGHSGYVNTVTVS 201 (315)
T ss_pred eeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-------eEEEEccCC-cchhhccccccccEEEEEEC
Confidence 99998755444333332 7899999999954 67888888555 599999997 77888899999999999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 482 SN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
|| ..+++|+.||.+.+||++.++.+..+. |...|.+++|+|+..+|+.+. +..|+|||+.++..+..+.......
T Consensus 202 pDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-- 277 (315)
T KOG0279|consen 202 PDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-- 277 (315)
T ss_pred CCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc--
Confidence 99 778999999999999999999988875 678899999999987776664 4559999999998887776543221
Q ss_pred cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..........+++|+++|..|++|-.|+.|++|.+.
T Consensus 278 s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 111124456788999999999999999999999985
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.2e-37 Score=274.33 Aligned_cols=241 Identities=18% Similarity=0.290 Sum_probs=218.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.|.++|+++.|+++|.++++|..+|.|++|+.+-. ........|...|.+++|+| ++..|++++.||+|+||
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-------nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-------NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIW 207 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccchh-------hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEE
Confidence 59999999999999999999999999999998765 22223334558999999999 78899999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-Ce
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 485 (597)
|....+....+.+|.-.|.+++|+| ...+++++|.|.. |++||.++ +.++.++.+|...|..+.|+++ ++
T Consensus 208 df~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnl-------VKlWDprS-g~cl~tlh~HKntVl~~~f~~n~N~ 278 (464)
T KOG0284|consen 208 DFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNL-------VKLWDPRS-GSCLATLHGHKNTVLAVKFNPNGNW 278 (464)
T ss_pred eccCCchhheeccCCCCcceeccCC-ccceeEEccCCce-------eEeecCCC-cchhhhhhhccceEEEEEEcCCCCe
Confidence 9998888888899999999999999 7889999996654 99999998 8899999999999999999999 99
Q ss_pred EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcC
Q 042883 486 LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 564 (597)
|+++|.|..+++||+++.+.++.+++|...++++.|+|- ..+|++|+.||.|..|.+...+++..+.. +
T Consensus 279 Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~----------A 348 (464)
T KOG0284|consen 279 LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP----------A 348 (464)
T ss_pred eEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc----------c
Confidence 999999999999999999999999999999999999995 56888999999999999987777766664 4
Q ss_pred CCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 565 GSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 565 h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
|...|++++|+|=|.+|++|+.|.++++|.
T Consensus 349 Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 349 HDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cccceeeeeccccceeEeecCCCcceeeec
Confidence 799999999999999999999999999996
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=251.49 Aligned_cols=245 Identities=18% Similarity=0.310 Sum_probs=217.7
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
....|..++|+|+|+++|.|+-|+...||++.+..... .........+|.+.+.|+.|.+ +..|++++.|.+..+||
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g-~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG-NVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWD 172 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccc-cceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEE
Confidence 46789999999999999999999999999998542221 1223345668999999999985 67899999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l 486 (597)
+++++.+..|.+|.+.|.+++++|.+++.|++|+-|+. .++||+|. +..+.+|.+|.+.|++|.|.|+ .-|
T Consensus 173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-------aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-------AKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred cccceEEEEecCCcccEEEEecCCCCCCeEEecccccc-------eeeeeccC-cceeEeecccccccceEEEccCCCee
Confidence 99999999999999999999999989999999985554 89999998 7899999999999999999999 559
Q ss_pred EEeeCCCcEEEEEcCCCcceeeeeC--CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcC
Q 042883 487 ASASTDSSLRLWDVKENLPLHTFRG--HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 564 (597)
++|+.|++.++||+|..+.+..+.. ...+|++++||..|++|++|..|.++.+||.-.++.+..+. +
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-----------G 313 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-----------G 313 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-----------c
Confidence 9999999999999999888887763 34588999999999999999999999999998888777665 5
Q ss_pred CCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 565 GSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 565 h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
|...|+++..+|||.-+++|+.|..++||.
T Consensus 314 HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 314 HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 799999999999999999999999999994
No 11
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2e-33 Score=254.85 Aligned_cols=239 Identities=14% Similarity=0.254 Sum_probs=206.3
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...+.++...|....+++|+.|..+.++|.... .......+|...|+.+.++| +...+++++.|..|+||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-------q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN-------QILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh-------hhhhhccCcceEEEEEEecc-chhheeecCCcceEEeecc
Confidence 346788888887788999999999999998876 44456668899999999999 7889999999999999999
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--CCCceEEEEecCC-Ce
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--HKKAVSYVKFLSN-NE 485 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~-~~ 485 (597)
...........|..+|+.+..+| .+.||+++++|+. +.+.|+++ +..+..... ..-.+++.+|+|| ..
T Consensus 291 ~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~-------w~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDgLi 361 (506)
T KOG0289|consen 291 PLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGT-------WAFSDISS-GSQLTVVSDETSDVEYTSAAFHPDGLI 361 (506)
T ss_pred ccccCccccccccccceeeeecc-CCcEEEEecCCce-------EEEEEccC-CcEEEEEeeccccceeEEeeEcCCceE
Confidence 88777888889999999999999 8999999997665 89999998 554444432 2345899999999 55
Q ss_pred EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCC
Q 042883 486 LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h 565 (597)
|.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|.||+++..|+.|++||++..+...++....
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~---------- 431 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE---------- 431 (506)
T ss_pred EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc----------
Confidence 7889999999999999999999999999999999999999999999999999999999988888777643
Q ss_pred CcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 566 SYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
...+.++.|++.|.+|+.++.|=.|++++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 55799999999999999998887676665
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-34 Score=265.83 Aligned_cols=239 Identities=20% Similarity=0.345 Sum_probs=217.8
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
....|++++|+.+|..||+|..||.++||+..+. .......|.++|.++.|+. .+++|++++.||++.+||
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~--------l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN--------LISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWD 304 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCch--------hhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEe
Confidence 4578999999999999999999999999998876 3444556899999999998 799999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l 486 (597)
..++...+.+.-|..+-.++.|- +..-|++++.|+. |+|+.+.. ..|+.++.+|.+.|.++.|+|. ..|
T Consensus 305 ~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~-------i~V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 305 AHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGC-------IHVCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred ccCceEEEeeeeccCCccceEEe--cCceEeecCCCce-------EEEEEecC-CCcceeeecccCceEEEEECCCCceE
Confidence 99999999999898887899997 6677888886555 99999987 7899999999999999999999 779
Q ss_pred EEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC---------CEEEEEeCCCcEEEEEccCCccccccccCCCC
Q 042883 487 ASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN---------EYIACGSETNEVFVYHKAISKPAASHRFGSDA 557 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 557 (597)
+++|.|++++||..........+.+|...|+.+.|+|+| ..+++++.|++|++||+..+.+++.+.
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~----- 449 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM----- 449 (524)
T ss_pred EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-----
Confidence 999999999999999999999999999999999999975 468999999999999999999998875
Q ss_pred CCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 558 DHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|..+|.+++|+|+|+|+++|+.||.|+||++.
T Consensus 450 ------kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 450 ------KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred ------cCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 369999999999999999999999999999975
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-35 Score=256.86 Aligned_cols=242 Identities=20% Similarity=0.342 Sum_probs=221.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++ .......+|...|..|++++ -..++++++.|+.|+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-------~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-------QLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVK 218 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-------eEEEeecchhheeeeeeecc-cCceEEEecCCCeeE
Confidence 4589999999999999999999999999999999998 34445557899999999998 788999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
-||+..++.++.+.+|-+.|++++.+| .-..+++|+.|.+ +++||+++ ...+..+.||..+|.+|.+.|-
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst-------~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDST-------IRVWDIRT-RASVHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcce-------EEEeeecc-cceEEEecCCCCcceeEEeecCC
Confidence 999999999999999999999999999 8899999997766 99999998 8889999999999999999887
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
..+++||.|++|++||++.|+-..++..|...+.+++.+|....+++++.|. |+-|++..|..+..+.
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls----------- 357 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS----------- 357 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc-----------
Confidence 8999999999999999999999999999999999999999999999988764 9999999888877643
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|..-|+.++.+.|| ++++|+.+|.+.+||..
T Consensus 358 gh~~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred cccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 468899999998776 78899999999999965
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=266.99 Aligned_cols=241 Identities=19% Similarity=0.335 Sum_probs=212.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.-.-+|..+.|.|+|+.|++|+..|.+.+|+.... ....+...|..+|.++.|++ ++..+++|+.+|.|++|
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyW 165 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYW 165 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEec
Confidence 34568999999999999999999999999997554 33345567999999999999 89999999999999999
Q ss_pred eCCCCeeeeEEee-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-C
Q 042883 407 DVTTSQSVMEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 407 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~ 484 (597)
+..- ..+..+.. |...|.+++|+| +...|+++++|++ |+|||... .+.-..+.+|.-.|.+++|+|. +
T Consensus 166 qpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~-------ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kg 235 (464)
T KOG0284|consen 166 QPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGT-------IKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKG 235 (464)
T ss_pred ccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCe-------EEEEeccC-CchhheeccCCCCcceeccCCccc
Confidence 9754 34444444 558999999999 7788899997666 99999997 6777788999999999999999 9
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 564 (597)
.|++||.|..|++||.+++.++.++.+|.+.|..+.|++++++|+++|.|..+++||+++.+.+..+. +
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-----------~ 304 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-----------G 304 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-----------c
Confidence 99999999999999999999999999999999999999999999999999999999999888777765 4
Q ss_pred CCcceEEEEEccC-CCeEEEecCcccEEEEEec
Q 042883 565 GSYFISAVCWKSD-SPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 565 h~~~i~~v~~~~~-~~~l~s~~~dg~v~iwd~~ 596 (597)
|...|+++.|+|- ..+|.+|+.||.|..|.+.
T Consensus 305 Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 305 HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred chhhheeeccccccccceeeccCCCceEEEecc
Confidence 7899999999994 4678889999999999874
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.7e-34 Score=245.26 Aligned_cols=254 Identities=24% Similarity=0.294 Sum_probs=222.3
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
-.+.||.+.|+.+.|+|+|.+||+|+.|..|.+|++... ........+|.++|..+.|.+ +++.|++++.|.+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------ceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------CENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKT 113 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc------ccceeeeccccceeEeeeecc-CCCEEEEecCCce
Confidence 345799999999999999999999999999999997765 223334458999999999999 8999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc----------------------------------cC
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV----------------------------------GS 448 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~----------------------------------~~ 448 (597)
|+.||+++|+.+..+++|..-|+++..+.-+..++.++++|+++ |+
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence 99999999999999999999999999665566788999999988 88
Q ss_pred CCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCC----cceeeeeCCCC----ceeEE
Q 042883 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKEN----LPLHTFRGHTN----EKNFV 519 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~----~v~~v 519 (597)
-|+.|++||++. ...+.++.||.+.|+.+..+|+ ..+++-+.|.++++||++.. +++..+.+|.. ....+
T Consensus 194 Idn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 194 IDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred ccCceeeecccc-CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 889999999987 7788999999999999999999 78999999999999999863 34666766543 33568
Q ss_pred EEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 520 GLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 520 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+|+|++..+.+|+.|..+++||....+.+..++ +|.+.|+.++|+|..++|.+++.|.+|++=.+
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-----------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-----------GHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcC-----------CcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999988877776665 57999999999999999999999999987554
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-34 Score=278.67 Aligned_cols=206 Identities=16% Similarity=0.334 Sum_probs=193.5
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.||.++|+.+.|+|+.++|++++.|++|++|.+.+. .......+|..+|+.+.|+| -|.++||++.|++
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~t 516 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQT 516 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccc-------eeEEEecCCCcceeeEEecC-CceEEEecCCCce
Confidence 347799999999999999999999999999999999987 45566668999999999999 7999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
.++|......+.+.+.+|.+.|.++.|+| +..++++||.|.+ +++||+.+ +..++.|.||.++|.+|+|+|
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~t-------VRlWDv~~-G~~VRiF~GH~~~V~al~~Sp 587 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRT-------VRLWDVST-GNSVRIFTGHKGPVTALAFSP 587 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC-cccccccCCCCce-------EEEEEcCC-CcEEEEecCCCCceEEEEEcC
Confidence 99999999999999999999999999999 9999999997665 99999998 888999999999999999999
Q ss_pred C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC
Q 042883 483 N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 545 (597)
. .+|++|+.||.|.|||+.+++.+..+.+|.+.|+++.|+.+|.+||+||.|+.|++||+..-
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9 77999999999999999999999999999999999999999999999999999999998653
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=233.93 Aligned_cols=261 Identities=17% Similarity=0.281 Sum_probs=211.6
Q ss_pred cccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+.+|.+.|+.++|+|- |..||+++.|+.|+||+...+ .... -......+|...|..++|+| .+++|++|+.|.+
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~s~~--ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t 84 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-DSWT--CKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT 84 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-CcEE--EEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence 45689999999999997 889999999999999998753 1110 01122236889999999999 7889999999999
Q ss_pred EEEEeCCCC--eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC--CCcceeeeccCCCceEEE
Q 042883 403 VTIWDVTTS--QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN--ISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 403 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~v~~v 478 (597)
+.||.-..+ +++..+.||...|.+++|++ ++++||+++.|+. |-||.+.. .-.....+..|...|..+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKS-------VWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKS-------VWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCe-------EEEEEecCCCcEEEEeeeccccccccEE
Confidence 999986544 67889999999999999999 9999999998766 89999874 234677889999999999
Q ss_pred EecCC-CeEEEeeCCCcEEEEEcC---CCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC------ccc
Q 042883 479 KFLSN-NELASASTDSSLRLWDVK---ENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS------KPA 548 (597)
Q Consensus 479 ~~~~~-~~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~------~~~ 548 (597)
.|+|. ..|+++|.|++|++|+-. ...++.++.+|.+.|.+++|++.|..|++++.|++|+||-..+. ..+
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~ 236 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRAL 236 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccce
Confidence 99999 999999999999999876 35678999999999999999999999999999999999984321 111
Q ss_pred cccccC--CC--------------CC----------CCcCcCCCcceEEEEEccC-CCeEEEecCcccEEEEEec
Q 042883 549 ASHRFG--SD--------------AD----------HVDDDMGSYFISAVCWKSD-SPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 549 ~~~~~~--~~--------------~~----------~~~~~~h~~~i~~v~~~~~-~~~l~s~~~dg~v~iwd~~ 596 (597)
...+-. .. .. ......|...|++|+|+|. ..+|++|+.||.|++|.+.
T Consensus 237 Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 237 YDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111111 00 00 0012348889999999994 6789999999999999875
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=250.74 Aligned_cols=245 Identities=18% Similarity=0.288 Sum_probs=222.4
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.||.+.|.+|+|+..|.++++++.|-.+++||..+. ........+|...|.++.|-| .+++|++++.|.+|
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTI 217 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccce
Confidence 45589999999999999999999999999999999864 123334557888999999999 68999999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
+.|++.++-++.++.+|...|..++.+. |+.++++++.|.+ +++|-+.+ +.....+..|..+|-+++|.|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqt-------l~vW~~~t-~~~k~~lR~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQT-------LRVWVVAT-KQCKAELREHEHPVECIAWAPE 288 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCce-------EEEEEecc-chhhhhhhccccceEEEEeccc
Confidence 9999999999999999999999999997 9999999997655 99999987 7777888899999999999652
Q ss_pred ----------------CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 484 ----------------NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 484 ----------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
..+++++.|++|++||+.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||+++++.
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 2588999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
...+.. |...+++++|+.+..++++|+-|.++++|.-
T Consensus 369 mk~~~a-----------h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 369 MKTLEA-----------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeccCC-----------CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 888763 5889999999999999999999999999974
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=261.54 Aligned_cols=202 Identities=21% Similarity=0.358 Sum_probs=189.9
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
+.+.||...|..++|+|+|++|+|++.|.+-++||+.+. .......+|...|.+++|+| +|.++++|+.|..
T Consensus 255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-------~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-------SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSL 326 (459)
T ss_pred hhhhcchhhheeeeecCCCceeeecccccchhhcccccc-------hhhHhhcccccccceeEecC-CCceeeccCccch
Confidence 556689999999999999999999999999999999987 45556668999999999999 8999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
-+|||+++|.++..+.+|...|.+|+|+| +|..++|||.|++ ++|||++. ...+.++.+|.+-|+.|.|+|
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt-------~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNT-------CKVWDLRM-RSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCc-------EEEeeecc-cccceecccccchhhheEecc
Confidence 99999999999999999999999999999 9999999996555 99999997 777999999999999999999
Q ss_pred C--CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 483 N--NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 483 ~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
+ .+|+|++.|++++||..+++.+++++.||.+.|.++.+++||.++++++.|.++++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 6 5689999999999999999999999999999999999999999999999999999995
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.5e-33 Score=233.71 Aligned_cols=246 Identities=17% Similarity=0.295 Sum_probs=202.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+..+.|+.+.+.|+++.||+++ ...|++||+.+.. ........+|...|++|.|.. ++..+++|+.||+++
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~n-----p~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNN-----PNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVK 108 (311)
T ss_pred EecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCC-----CCceeEEeccCCceEEEEEee-cCeEEEecCCCceEE
Confidence 345678999999999999999887 6689999999871 112234446779999999998 899999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSN 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~ 483 (597)
|||++.....+.+ .|.++|+++..+| +..-|++|.. +|.|++||+.. ...... +......|.++.+.|+
T Consensus 109 IWdlR~~~~qR~~-~~~spVn~vvlhp-nQteLis~dq-------sg~irvWDl~~-~~c~~~liPe~~~~i~sl~v~~d 178 (311)
T KOG0315|consen 109 IWDLRSLSCQRNY-QHNSPVNTVVLHP-NQTELISGDQ-------SGNIRVWDLGE-NSCTHELIPEDDTSIQSLTVMPD 178 (311)
T ss_pred EEeccCcccchhc-cCCCCcceEEecC-CcceEEeecC-------CCcEEEEEccC-CccccccCCCCCcceeeEEEcCC
Confidence 9999986665555 5679999999999 6677777774 55599999997 333333 3334568999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCC------cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 484 -NELASASTDSSLRLWDVKEN------LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
.+++.+...|..++|++.+. .++.+++.|.+-+..+.+|||+++|+++|.|.+++||+..+. .......
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l--- 254 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVL--- 254 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEe---
Confidence 77888889999999998763 467788899999999999999999999999999999999877 2222222
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+|..++++.+||.||.||++|+.|+.+++|++++
T Consensus 255 ------~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 255 ------TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ------ecCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 24688999999999999999999999999999863
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-33 Score=263.04 Aligned_cols=244 Identities=18% Similarity=0.306 Sum_probs=220.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
..+...|.++.|+|...+++++-.+|.|.||+.++. .......-...+|.+..|-+ ..+.+++|+.|..|+|
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-------tmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-------TMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRV 81 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccc-------eeeeeeeecccchhhheeee-ccceEEEecCCceEEE
Confidence 347889999999999999999999999999999886 11111222456888888887 7899999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-- 483 (597)
|+..+++.+..|..|.+.|.+++.+| ...+++++|+|-+ |++||....-.+..+|.||...|.+++|+|.
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~-------iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMT-------IKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred EecccceeeEEeeccccceeeeeecC-CCCeEEecCCccE-------EEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 99999999999999999999999999 7778888887655 9999999877788999999999999999998
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC--CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN--EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD 561 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 561 (597)
+.+++++-|++|+||.+....+.+++.+|...|++|.+-+.| .||++|++|..|+|||.++...+.++.
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe--------- 224 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE--------- 224 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---------
Confidence 889999999999999999999999999999999999998765 599999999999999999999999886
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|..+.|+|.-+++++|+.||+|+||+-.
T Consensus 225 --GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 225 --GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred --cccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 579999999999999999999999999999854
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-32 Score=251.82 Aligned_cols=241 Identities=23% Similarity=0.354 Sum_probs=216.8
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
-.|.++|.++.|+..|++|++++.|+++.+||..++ .......-|..+...|.|- +...+++++.||.|+|
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-------~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V 343 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-------TVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHV 343 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-------eEEEeeeeccCCccceEEe--cCceEeecCCCceEEE
Confidence 359999999999999999999999999999999877 2222223345555778998 4678999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC-
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN- 484 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~- 484 (597)
+.+....++.++.+|.+.|.++.|+| .+.+|+++++|++ ++||.... ......+.+|...|..+.|+|.+
T Consensus 344 ~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~T-------lkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 344 CKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGT-------LKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred EEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCe-------eEeeecCC-CcchhhhhhhccceeeEeecCCCC
Confidence 99999999999999999999999999 9999999997766 99999887 67888899999999999999862
Q ss_pred ---------eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 485 ---------ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 485 ---------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
.+++++.|++|++||+..+.+++.|..|..+|++++|+|+|+|+++|+.||.|.||+.++++.++.+..
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-- 492 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-- 492 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--
Confidence 389999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...|..++|+.+|.+|.++-.||.+++.|+.
T Consensus 493 ----------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 ----------TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ----------CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 6679999999999999999999999999975
No 23
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-33 Score=233.80 Aligned_cols=243 Identities=18% Similarity=0.371 Sum_probs=210.2
Q ss_pred CCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCc-eEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 327 HAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPM-VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 327 ~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
.-.+.+..++|+++ .+.+++++.||+++|||+... ..|+ ....|...|.++.|++..+..++++++|++|+
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCC-------CcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 35678999999995 467888999999999996544 2233 33458889999999998888999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+|+...++.+.++.+|...|+..+|+|..++++++++.|+. +++||++.+++.+. +..|...|.++.|+.-
T Consensus 131 LW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-------l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT-------LRLWDVRSPGKFMS-IEAHNSEILCCDWSKYN 202 (311)
T ss_pred eecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce-------EEEEEecCCCceeE-EEeccceeEeecccccC
Confidence 99999999999999999999999999999999999996655 99999999877776 7889999999999876
Q ss_pred -CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 484 -NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
+.++||+.|+.|++||+++ ..++..+.+|.-.|..+.|||. ..+|++++.|-+++|||...+.......
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~-------- 274 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV-------- 274 (311)
T ss_pred CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh--------
Confidence 7899999999999999998 5688999999999999999997 5688999999999999987544332222
Q ss_pred cCcCCCcceEEEEEcc-CCCeEEEecCcccEEEEE
Q 042883 561 DDDMGSYFISAVCWKS-DSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~-~~~~l~s~~~dg~v~iwd 594 (597)
.+|...+.++.|++ ++.++|+++.|+.++||+
T Consensus 275 --~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 275 --DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred --hccceEEeccccccccCceeeecccccceeeec
Confidence 25799999999997 567899999999999998
No 24
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=239.95 Aligned_cols=249 Identities=18% Similarity=0.343 Sum_probs=215.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.|.+.|..+.|-++...|++|+.|..|++|++.... ........+..++|+.++|.+ ++.++++++.|+.+++|
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLW 246 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeee
Confidence 588999999999999999999999999999998762 112233445678899999999 78889999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc--------------------------------cCCCCeEE
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV--------------------------------GSADHHIH 454 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~--------------------------------~~~d~~i~ 454 (597)
++...+...++.+|.+.|+++.|.. +...+++|+.|.++ |..|++|+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVR 325 (459)
T ss_pred eccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceE
Confidence 9999999999999999999999986 55559999999988 89999999
Q ss_pred EEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCC----CCceeEEEEeecCCEEE
Q 042883 455 YYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGH----TNEKNFVGLTVNNEYIA 529 (597)
Q Consensus 455 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~v~~s~~g~~l~ 529 (597)
+||.+. ..+......+. .|+++..+++ ..+++++.|.++.++|+++......+... ....+.+.|||++.|++
T Consensus 326 fwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 326 FWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEeccC-CceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999998 66777776554 8999999999 66889999999999999998887777532 23467899999999999
Q ss_pred EEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 530 CGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
+||.||.|+||++.+++....+.... ....|++++|+|.|.+|++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~---------s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLST---------SNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCC---------CCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999887776542 13379999999999999999999999999
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.2e-32 Score=260.72 Aligned_cols=255 Identities=18% Similarity=0.313 Sum_probs=213.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|...+++++++|||+++|||+.||.|+|||...+ -.......|.+.|+++.|+. .++.+++.+.||+|+.
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------fC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-------FCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRA 418 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-------eEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEe
Confidence 379999999999999999999999999999999887 34445557899999999998 7999999999999999
Q ss_pred EeCCCCeeeeEEeecc-ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 406 WDVTTSQSVMEYEEHE-KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
||+...+..+++.... ....+++..| .|.++++|+.|.. .|.+|++.+ ++.+..+.||.++|.+++|+|.
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F------~IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSF------EIFVWSVQT-GQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceE------EEEEEEeec-CeeeehhcCCCCcceeeEEcccc
Confidence 9999999888886533 3456788888 7888888886653 499999998 8999999999999999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCc-ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCC----
Q 042883 484 NELASASTDSSLRLWDVKENL-PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDAD---- 558 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---- 558 (597)
..|+++|.|.+|++||+-... .+.++. +...+..++|+|+|+-|++++.||.|.+||...+..+..+.......
T Consensus 491 ~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~ 569 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK 569 (893)
T ss_pred CeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence 889999999999999997643 344443 56778999999999999999999999999998776654443222111
Q ss_pred -----CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 559 -----HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 559 -----~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
......-...++.+++++||..|++||..+.|+|||+.+
T Consensus 570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 111112357899999999999999999999999999853
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.4e-33 Score=245.51 Aligned_cols=232 Identities=22% Similarity=0.352 Sum_probs=205.0
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
....|+|+.++ ...+++|..|++|+|||..+. .......+|.+.|.|+.|. ...+++|+.|.+|+|||
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~-------~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWD 263 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL-------ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWD 263 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH-------HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEe
Confidence 56789999995 457999999999999998876 4556778999999999986 46999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC--cceeeeccCCCceEEEEecCCCe
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS--QPLHVFNGHKKAVSYVKFLSNNE 485 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~v~~~~~~~ 485 (597)
+.+|+++.++.+|...|..+.|+. .++++++.|.+ |.+||+..+. .....+.||...|+.+.|+. .+
T Consensus 264 v~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrs-------iaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-ky 332 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRS-------IAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-KY 332 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCce-------eEEEeccCchHHHHHHHHhhhhhheeeecccc-ce
Confidence 999999999999999999999974 78999996655 9999998643 23455779999999999864 59
Q ss_pred EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCC
Q 042883 486 LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h 565 (597)
++++|.|.+|++|++.++..++++.+|...|.++.+ .|+++++|+.|.+|++||+..|..+..+. +|
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe-----------GH 399 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-----------GH 399 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-----------ch
Confidence 999999999999999999999999999999988876 79999999999999999999999988776 57
Q ss_pred CcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 566 SYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
..-|.++.|+ ...+++|+.||+|+|||+.+
T Consensus 400 EeLvRciRFd--~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 400 EELVRCIRFD--NKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred HHhhhheeec--CceeeeccccceEEEEeccc
Confidence 8889999995 56799999999999999864
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=223.68 Aligned_cols=244 Identities=17% Similarity=0.262 Sum_probs=210.8
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+-.+.++|.++.|+-+|++.++++.|.+|++|+...+ .......+|...|..++.+. ++..|++|+.|..|.
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQ 84 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccc-cccccccCCCCceEE
Confidence 3468999999999999999999999999999998876 33344557888999999987 788999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC-CcceeeeccCCCceEEEEecCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI-SQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
+||+.+|+..+.+.+|.+.|+.+.|+. +...+++|+.|.. +++||.++. ..|+.++....+.|.++... .
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s-------~r~wDCRS~s~ePiQildea~D~V~Si~v~-~ 155 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSS-------VRLWDCRSRSFEPIQILDEAKDGVSSIDVA-E 155 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC-cceEEEeccccce-------eEEEEcccCCCCccchhhhhcCceeEEEec-c
Confidence 999999999999999999999999997 8899999986555 999999863 46788888778899999874 3
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
..|++|+.||+++.||++.|+....+. ..+|++++|++||+..++++.|+.+++.|..+|+.+..+....
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk-------- 225 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK-------- 225 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc--------
Confidence 679999999999999999998766655 4679999999999999999999999999999999998876311
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
....-...+++.....+++|+.||.|++||+.
T Consensus 226 -n~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 226 -NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred -cceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 13344566788888899999999999999984
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=266.88 Aligned_cols=248 Identities=21% Similarity=0.346 Sum_probs=213.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.+...|.++.|+++|+.+++++.++.+++|+...... .......+|...|.+++|+| ++.++++|+.|++|+||
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIW 230 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECC-CCcEEEEecCCceEEEe
Confidence 3578999999999999999999999999999965511 12222357899999999999 78899999999999999
Q ss_pred eC-CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-C
Q 042883 407 DV-TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 407 d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~ 484 (597)
|+ ..+..+.++.+|...|++++|+| .++++++|+.|++ |+|||+++ +.++..+.+|.+.|++++|+++ +
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~t-------vriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGT-------VRIWDVRT-GECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCc-------EEEEeccC-CeEEEeeeccCCceEEEEECCCCC
Confidence 99 55688999999999999999999 6699999997665 99999998 8999999999999999999999 8
Q ss_pred eEEEeeCCCcEEEEEcCCCc--ceeeeeCCCCc--eeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 485 ELASASTDSSLRLWDVKENL--PLHTFRGHTNE--KNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~--v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
.|++++.|+.|+|||+.++. ++..+.++... ++++.|+|+|.++++++.|+.+++||+..+.....+.....
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~---- 377 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN---- 377 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC----
Confidence 89999999999999999998 56777766555 89999999999999999999999999998887776653210
Q ss_pred cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
. ...+.+...++.+.++++|+.|+.|++||+.+
T Consensus 378 ---~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 378 ---L-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ---c-ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 0 12455666688999999999999999999864
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=241.48 Aligned_cols=246 Identities=18% Similarity=0.252 Sum_probs=221.6
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|..+|+.+-|+|+-..+++++.|++|++||+.++ .......+|...+..|+|+. .|.++++++.|-.+
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-------ELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSA 174 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccch-------hhhhhhhccccceeEEEEec-CccEEEecCCccch
Confidence 34579999999999999999999999999999999988 33445557888899999998 78999999999999
Q ss_pred EEEeCCC-CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 404 TIWDVTT-SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 404 ~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
++||..+ .+++..+.+|...|.++.|-| .+.++++++.|.+ |+.|++.+ +..+.++.+|...|..+..+.
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~t-------ik~We~~t-g~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNT-------IKAWECDT-GYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccc-------eeEEeccc-ceeEEeccCchHhEEEEEecC
Confidence 9999876 467777889999999999999 7899999997665 99999998 889999999999999999999
Q ss_pred C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec---------------CCEEEEEeCCCcEEEEEccCCc
Q 042883 483 N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN---------------NEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~---------------g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
| .++++++.|.+|++|-+.++.+...+..|..+|.+++|-|. |.++++++.|++|++||+.++.
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 9 66889999999999999999888999999999999998652 2589999999999999999999
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+.++. +|..+|.+++|+|.|+||+++.+|++++|||+.+
T Consensus 326 cL~tL~-----------ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 326 CLFTLV-----------GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred EEEEEe-----------cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 888775 5799999999999999999999999999999864
No 30
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=240.39 Aligned_cols=255 Identities=18% Similarity=0.301 Sum_probs=198.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+..|.+.|+-+.||++|++||+++.|.+..||.+..... ........+|..+|..+.|+| +++++++++.|..+.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLS 294 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECC-CCCeEEecCchHhee
Confidence 446999999999999999999999999999999876511 222345668999999999999 788999999999999
Q ss_pred EEeCCCCeeeeEEee-ccceeEEEEeCCCCCceEEeecCCCcc--cCCCCe----------EEEEEccC--CCcc-----
Q 042883 405 IWDVTTSQSVMEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKV--GSADHH----------IHYYDLRN--ISQP----- 464 (597)
Q Consensus 405 iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~--~~~d~~----------i~i~d~~~--~~~~----- 464 (597)
+||+.+|.....+.. +...+.+++|.| |+..+++|+.|+.+ -+-||+ -++||+.- .++.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999998877743 457899999999 89999999988774 000010 01333320 0110
Q ss_pred ----eee----------eccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeE--EEEee-cCC
Q 042883 465 ----LHV----------FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNF--VGLTV-NNE 526 (597)
Q Consensus 465 ----~~~----------~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~--v~~s~-~g~ 526 (597)
+.. +.....+|++...+.+ .++++.-.+..+++||+...+.+..+.||...-.- -+|-. +..
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 000 1123457889999988 55666678899999999999999999998764332 34433 347
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEec
Q 042883 527 YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~ 596 (597)
++++|+.|+.|+||+..+++++..+. +|...|++|+|+|.. .++|++|.||+|+||..+
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~Ls-----------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLS-----------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeec-----------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999999999998886 579999999999965 568999999999999865
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-31 Score=243.29 Aligned_cols=253 Identities=22% Similarity=0.335 Sum_probs=210.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.|...|+|+.|+|||.++++++.||+|.+||-.++.... .. ....+|.+.|++++|+| ++..+++++.|.+++||
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg-~l---~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG-EL---EDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIW 262 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE-Ee---cCCCCccccEEEEEECC-CCceEEEecCCceEEEE
Confidence 588999999999999999999999999999987771111 00 11336899999999999 78999999999999999
Q ss_pred eCCCCeeee-------------------------------------------EEeeccceeEEEEeCCCCCceEEeecCC
Q 042883 407 DVTTSQSVM-------------------------------------------EYEEHEKRAWSVDFSCTEPSMLVSGSDD 443 (597)
Q Consensus 407 d~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~d 443 (597)
|+.++.++. .+.+|...|++++.+| ++.+|.+|+.|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyD 341 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYD 341 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccC
Confidence 987654322 2347889999999999 78999999999
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 042883 444 CKV----------------------------------------------------------------------------- 446 (597)
Q Consensus 444 ~~~----------------------------------------------------------------------------- 446 (597)
|.+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 999
Q ss_pred ---------------------------------------cCCCCeEEEEEccCCC-cceeeeccCCCceEEEEecCC-Ce
Q 042883 447 ---------------------------------------GSADHHIHYYDLRNIS-QPLHVFNGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 447 ---------------------------------------~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~-~~ 485 (597)
|+.|+.|+||.+.... ........|.++|+.++++|+ .+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 9999999999998622 233345679999999999999 88
Q ss_pred EEEeeCCCcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcC
Q 042883 486 LASASTDSSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 564 (597)
|+++...+.|.+||+.+++.... +.-|...|.+++|+|+..++|+|+.|-.|.||++........+. +.
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----------nA 571 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----------NA 571 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec----------cc
Confidence 99999999999999998766333 33489999999999999999999999999999987544332222 35
Q ss_pred CCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 565 GSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 565 h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|...|+.+.|- +...+++.+.|..|++|++.
T Consensus 572 H~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 572 HLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 67789999997 45689999999999999985
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=251.43 Aligned_cols=243 Identities=20% Similarity=0.339 Sum_probs=208.3
Q ss_pred ccCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
..+|...|+++.|.| .+.+|++++.|+.|+||++-.. ........+|..+|..++|+. .+..+++++.|+.|
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFL 282 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccc-cCCeeeeeecceee
Confidence 348999999999999 8899999999999999999763 244556678999999999998 78999999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
++||+++|+++..+. ....++++.|+|++.+.|++|+.|+. |+.||+|+ ++.+..+..|-+.|..+.|-++
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~k-------i~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKK-------IRQWDIRS-GKVVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCc-------EEEEeccc-hHHHHHHHhhhhheeeeEEccC
Confidence 999999999999885 45678999999977689999886555 99999998 7888999999999999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcce----------------------------------------------eeeeCCCC--
Q 042883 484 -NELASASTDSSLRLWDVKENLPL----------------------------------------------HTFRGHTN-- 514 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~----------------------------------------------~~~~~~~~-- 514 (597)
.++++.+.|++++||+.+.+-++ ..+.+|..
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 78999999999999998753211 11234432
Q ss_pred ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEE
Q 042883 515 EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVL 593 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iw 593 (597)
--..+.|||||.+|++|+.||.+.+||.++-+.+..+.. |.+++..+.|+|.. ..+|+++.||.|++|
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-----------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-----------HDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-----------CCcceEEEEecCCCcceeEecccCceeEec
Confidence 234578999999999999999999999999988887763 58999999999965 568999999999999
Q ss_pred E
Q 042883 594 V 594 (597)
Q Consensus 594 d 594 (597)
|
T Consensus 503 d 503 (503)
T KOG0282|consen 503 D 503 (503)
T ss_pred C
Confidence 6
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-30 Score=221.22 Aligned_cols=261 Identities=12% Similarity=0.180 Sum_probs=217.0
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
-+.||..+++.+.|+.+|.+|++++.|.++.||-..++ ...-...+|.+.|++++.+. +...+++|+.|.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-------erlGty~GHtGavW~~Did~-~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-------ERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTA 76 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC-------ceeeeecCCCceEEEEEecC-Ccceeeecccccee
Confidence 45689999999999999999999999999999987665 45556678999999999997 78999999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC------CCcceeeeccCCCceEE
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN------ISQPLHVFNGHKKAVSY 477 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~v~~ 477 (597)
++||+.+|+.+..++ ...+|..+.|++ ++++++...++.. +..+.|.+||++. ...++..+..+.+.++.
T Consensus 77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~m--g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 77 KLWDVETGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQM--GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred EEEEcCCCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhc--CcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 999999999999885 577899999999 7777666654432 3467799999983 13557777778899999
Q ss_pred EEecCC-CeEEEeeCCCcEEEEEcCCCc-ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 478 VKFLSN-NELASASTDSSLRLWDVKENL-PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 478 v~~~~~-~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
+.|.|- ..|++|..||.|.+||+++|. .+.....|...|+.+.+++|..++++++.|.+-++||..+-..+.++....
T Consensus 153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 153 ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence 999998 789999999999999999974 455557899999999999999999999999999999988765544443221
Q ss_pred CCC--------------------------------------------CCcCcCCCcceEEEEEccCCCeEEEecCcccEE
Q 042883 556 DAD--------------------------------------------HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIK 591 (597)
Q Consensus 556 ~~~--------------------------------------------~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~ 591 (597)
... ...-.+|-++|++|+|+|+|...++|+.||.|+
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 000 001134899999999999999999999999999
Q ss_pred EEEec
Q 042883 592 VLVLA 596 (597)
Q Consensus 592 iwd~~ 596 (597)
+.-++
T Consensus 313 ~h~Fd 317 (327)
T KOG0643|consen 313 LHHFD 317 (327)
T ss_pred EEEec
Confidence 98765
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.5e-31 Score=255.70 Aligned_cols=248 Identities=17% Similarity=0.253 Sum_probs=217.7
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
-+.||...|.++....+|.+|+||+.|.+|++|.++.+... ........+|...|.+|+++..+..+|++++.|+++
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~---~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK---SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch---hhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 34589999999996667899999999999999998544111 112234557899999999988777899999999999
Q ss_pred EEEeCCCCee-----e----eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc
Q 042883 404 TIWDVTTSQS-----V----MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA 474 (597)
Q Consensus 404 ~iwd~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 474 (597)
++|++...+. + .....|...|++++++| +..+++|||.|++ .+||++.. .....++.+|...
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDkt-------aKiW~le~-~~l~~vLsGH~RG 507 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKT-------AKIWDLEQ-LRLLGVLSGHTRG 507 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccc-------eeeecccC-ceEEEEeeCCccc
Confidence 9999976221 1 12246899999999999 8899999996665 89999996 7889999999999
Q ss_pred eEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccccc
Q 042883 475 VSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRF 553 (597)
Q Consensus 475 v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 553 (597)
|++|.|+|. ..++|+|.|++|+||.+.+..++.+|.||...|..+.|-.+|..|++++.||-|++|+++++....++.
T Consensus 508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD- 586 (775)
T KOG0319|consen 508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD- 586 (775)
T ss_pred eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-
Confidence 999999998 889999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred CCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 554 GSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 554 ~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|...|++++-+|.+.+++||+.||.|.+|.
T Consensus 587 ----------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 587 ----------AHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ----------hccceeEEEeecCccceeEecCCCeEEEEee
Confidence 5799999999999999999999999999995
No 35
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2e-30 Score=237.55 Aligned_cols=266 Identities=20% Similarity=0.332 Sum_probs=215.0
Q ss_pred cccCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCc---cCCCCceEecCCCceeEEEEecCCCCEEEEeeC
Q 042883 324 DLFHAANIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPR---DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
..+.|.+.|+.+.+.|+. .++|+++..+.|.|||+........ .........+|...-++++|++.....+++|+.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 346799999999999965 5677888899999999977633332 223344667787778889999988899999999
Q ss_pred CCcEEEEeCCCCe-------eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC-CCcceeeeccC
Q 042883 400 DGIVTIWDVTTSQ-------SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN-ISQPLHVFNGH 471 (597)
Q Consensus 400 dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~-~~~~~~~~~~~ 471 (597)
|+.|++||+.... ....+.+|.+.|.+++|++....+|+++++|+. +.|||+|+ ..++.....+|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~-------L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK-------LMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe-------EEEEEcCCCCCCCccccccc
Confidence 9999999986532 346678999999999999988999999997665 99999995 36677778899
Q ss_pred CCceEEEEecCC--CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCcc
Q 042883 472 KKAVSYVKFLSN--NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 472 ~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
.+.|.+++|+|- ..||+||.|++|.+||+|+ .++++++.+|...|..|.|+|+ ...|++++.|+.+.|||+..-..
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 999999999998 6799999999999999998 6689999999999999999997 56889999999999999875322
Q ss_pred cccccc---CCCCCCCcCcCCCcceEEEEEccCCCe-EEEecCcccEEEEEec
Q 042883 548 AASHRF---GSDADHVDDDMGSYFISAVCWKSDSPT-MLTANRKGAIKVLVLA 596 (597)
Q Consensus 548 ~~~~~~---~~~~~~~~~~~h~~~i~~v~~~~~~~~-l~s~~~dg~v~iwd~~ 596 (597)
...... +..-.-+...+|...|..+.|+|+..+ |++.+.|+.+.||.+.
T Consensus 352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 211111 111111223468999999999999987 5668999999999875
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=258.13 Aligned_cols=246 Identities=24% Similarity=0.362 Sum_probs=213.4
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|...|++++|+|++.++++++.|++|+|||+... ........+|...|++++|+| .++++++|+.|++|
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~------~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD------GRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTV 270 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeeccCC------CeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcE
Confidence 34689999999999999999999999999999999332 133445568999999999999 55999999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc--ceeeeccCCCc--eEEEE
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ--PLHVFNGHKKA--VSYVK 479 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~--v~~v~ 479 (597)
+|||+++++++..+.+|.+.|++++|++ ++.++++++.|+. |++||+.+ +. ++..+.++... ++.+.
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~-------i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGT-------IRVWDLET-GSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCcc-------EEEEECCC-CceeeeecccCCCCCCceeEEE
Confidence 9999999999999999999999999999 8999999886555 99999998 44 35666666554 99999
Q ss_pred ecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCce---eEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 480 FLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEK---NFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v---~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
|+|+ .++++++.|+.+++||++.+..+..+.+|...+ .+..+++.|.++++|+.|+.|++||+.++..+..+.
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~--- 418 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE--- 418 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc---
Confidence 9999 889999999999999999999999999988853 334557789999999999999999999987777665
Q ss_pred CCCCCcCcCC-CcceEEEEEccCCCeEEEec--CcccEEEEEec
Q 042883 556 DADHVDDDMG-SYFISAVCWKSDSPTMLTAN--RKGAIKVLVLA 596 (597)
Q Consensus 556 ~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~~--~dg~v~iwd~~ 596 (597)
+| ...+..+.|+|...++++++ .|+.|++|..+
T Consensus 419 --------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 419 --------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 35 77899999999999999988 79999999753
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=6.9e-30 Score=215.49 Aligned_cols=231 Identities=19% Similarity=0.285 Sum_probs=190.0
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEec-CCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe--eeeEEe
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP-TRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ--SVMEYE 418 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~ 418 (597)
-+|+++++|.+|++|...++ .-..... ..+.|..+...| ++..|++++. -.|++||++++. ++.++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG--------~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG--------ICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred eEEEeccCcceeeeeehhcC--------eEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEe
Confidence 47899999999999999988 2233333 457899999999 7888888874 689999998875 588999
Q ss_pred eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEE
Q 042883 419 EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRL 497 (597)
Q Consensus 419 ~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~i 497 (597)
+|...|.++.|.. ++..+++||.||+ ++|||+|. ....+.+ .|.++|+++..+|+ ..|++|..+|.|++
T Consensus 81 ~h~kNVtaVgF~~-dgrWMyTgseDgt-------~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 81 GHTKNVTAVGFQC-DGRWMYTGSEDGT-------VKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred ccCCceEEEEEee-cCeEEEecCCCce-------EEEEeccC-cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 9999999999998 9999999996655 99999997 4444444 47799999999999 89999999999999
Q ss_pred EEcCCCcceeeeeC-CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 498 WDVKENLPLHTFRG-HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 498 wd~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
||+........+.. ....|.+++..|||.+++++...|+.++|++.+......+.... .-..|...+..+.+||
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~-----k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH-----KFQAHNGHILRCLLSP 225 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh-----heecccceEEEEEECC
Confidence 99998766666543 34578999999999999999999999999987744332222111 1124788899999999
Q ss_pred CCCeEEEecCcccEEEEEecC
Q 042883 577 DSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 577 ~~~~l~s~~~dg~v~iwd~~~ 597 (597)
++++|++++.|.+++||+++.
T Consensus 226 d~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CCcEEEeecCCceEEEEecCC
Confidence 999999999999999999863
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3e-31 Score=233.92 Aligned_cols=244 Identities=15% Similarity=0.268 Sum_probs=202.2
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.||++.|.|+.|. .+.|++|+.|.+|+|||++++ .......+|-..|..+.|+ ++++++++.|.+
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-------e~l~tlihHceaVLhlrf~---ng~mvtcSkDrs 298 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-------EPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRS 298 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC-------chhhHHhhhcceeEEEEEe---CCEEEEecCCce
Confidence 3567999999999995 469999999999999999998 4445566788999999998 469999999999
Q ss_pred EEEEeCCCCe---eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 403 VTIWDVTTSQ---SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 403 i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
+.+||+.... +...+.||...|+.+.|+. .++++++.|.+ |++|++.+ ...+.++.+|...|.++.
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRT-------ikvW~~st-~efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRT-------IKVWSTST-CEFVRTLNGHKRGIACLQ 367 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCce-------EEEEeccc-eeeehhhhcccccceehh
Confidence 9999997654 3345679999999999963 69999986555 99999998 889999999999999987
Q ss_pred ecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 480 FLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 480 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
+ .+..+++||.|.+|++||+..|.+++.+.||..-|.++.| |.+.|++|+.||+|+|||+.++..-.... ....-
T Consensus 368 Y-r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~--~~~Cl 442 (499)
T KOG0281|consen 368 Y-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA--STLCL 442 (499)
T ss_pred c-cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccc--cchHH
Confidence 6 3477899999999999999999999999999999999999 67789999999999999998754221100 00000
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.....|.+.|..+.|+ ...+++++.|.+|.|||+.
T Consensus 443 ~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 443 RTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred HhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 1112368899999995 5679999999999999974
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-30 Score=245.03 Aligned_cols=238 Identities=19% Similarity=0.328 Sum_probs=217.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
..-+|++..|-+--+++++|++|..|+||++++. ........|...|.+++.+| ...++++++.|-.|++||
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-------ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~ 125 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-------EKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWD 125 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEecccc-------eeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEee
Confidence 4568999999998899999999999999999998 55556667999999999999 688999999999999999
Q ss_pred CCCC-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC--
Q 042883 408 VTTS-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN-- 484 (597)
Q Consensus 408 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~-- 484 (597)
.+.+ .+.++|.+|...|.+++|+|.|.+.|++++-|++ |++|.+.. ..+..++.+|...|++|.+-+.+
T Consensus 126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT-------VKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdk 197 (794)
T KOG0276|consen 126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT-------VKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDK 197 (794)
T ss_pred ccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc-------EEEEEcCC-CCCceeeeccccCcceEEeccCCCc
Confidence 8764 6788999999999999999999999999996665 99999987 77889999999999999998875
Q ss_pred -eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 485 -ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 485 -~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
+|++|+.|.+|+|||..+..+++++.||...|+.+.|+|.=.+|++|+.||+|+||+..+.+...++.++
T Consensus 198 pylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--------- 268 (794)
T KOG0276|consen 198 PYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--------- 268 (794)
T ss_pred ceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC---------
Confidence 8999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEE
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKV 592 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~i 592 (597)
...+++|+-.+.+..++.|..+|.|.|
T Consensus 269 --leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 269 --LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred --CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 778999999998888999988887654
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.9e-29 Score=240.18 Aligned_cols=244 Identities=23% Similarity=0.344 Sum_probs=211.5
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.++|++++|+|++++|++++.||.|.+|++.+. ........|...+..+.|+| +++.+++++.||.|+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~ 76 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-------ELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIR 76 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-------CcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEE
Confidence 3479999999999999999999999999999999876 22334445777888999999 678999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+||+.+++.+..+..|...|.++.|+| ++.++++++.+ +.|.+||+++ ......+..|...+.++.|+|+
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-------~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRD-------KTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCC-------CeEEEEECCC-cEEEEEeccCCCcEEEEEEcCcC
Confidence 999998888888888998999999998 67788887744 4599999986 6677778889999999999998
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
.++++++.|+.|++||+++++.+..+..|...+.++.|+|++..+++++.||.|++||+..++.+..+.
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~----------- 216 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR----------- 216 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-----------
Confidence 556666669999999999999999999998899999999999999999999999999999877766653
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|...|.+++|+|++.++++++.||.|++||+.
T Consensus 217 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 246689999999998888888889999999985
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4e-30 Score=227.79 Aligned_cols=258 Identities=19% Similarity=0.317 Sum_probs=220.6
Q ss_pred eeeeeccccc----cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCC
Q 042883 316 VIAELRHGDL----FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTK 391 (597)
Q Consensus 316 ~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 391 (597)
.++.+..+.+ .||...|..+++|+--.|+++++.|+.|+.||+... .......+|-+.|+|++.+| .-
T Consensus 176 kIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n-------kvIR~YhGHlS~V~~L~lhP-Tl 247 (460)
T KOG0285|consen 176 KIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN-------KVIRHYHGHLSGVYCLDLHP-TL 247 (460)
T ss_pred EEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh-------hhHHHhccccceeEEEeccc-cc
Confidence 3555555443 479999999999999999999999999999999876 34445668889999999999 78
Q ss_pred CEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC
Q 042883 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH 471 (597)
Q Consensus 392 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 471 (597)
..|++|+.|..++|||+++...+..+.+|..+|.++.+.| .+..+++|+.|++ |++||++. ++...++..|
T Consensus 248 dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~t-------vrlWDl~a-gkt~~tlt~h 318 (460)
T KOG0285|consen 248 DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDST-------VRLWDLRA-GKTMITLTHH 318 (460)
T ss_pred eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCce-------EEEeeecc-CceeEeeecc
Confidence 8999999999999999999999999999999999999999 4556778886655 99999998 7888888889
Q ss_pred CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccc
Q 042883 472 KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAS 550 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 550 (597)
...|.+++.+|. ..|++++.| .|+-|++..|..+..+.+|...++.++.+.|| ++++|+++|.+.+||.++|-....
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 999999999999 778888877 68999999999999999999999999998776 678899999999999998866554
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
......++... ....|.+.+|+..|..|++|..|.+|++|.=
T Consensus 397 ~~t~vqpGSl~---sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 397 GQTIVQPGSLE---SEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred ccccccCCccc---cccceeEEeecccCceEEeccCCcceEEEec
Confidence 43222222222 2667999999999999999999999999964
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=245.02 Aligned_cols=239 Identities=20% Similarity=0.341 Sum_probs=206.7
Q ss_pred CCcEEEEEEcCCCCEEEEeeCC-CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDELFASAGVS-RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
..+|..++|+..|++||.|+.. |.+.||+.... .......+|...+++++++| +|.++++|+.||.|+|||
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-------sYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-------SYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWN 378 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeecc-------ceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEe
Confidence 4689999999999999998764 89999999876 44555667899999999999 899999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC-CCceEEEEecCCCeE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH-KKAVSYVKFLSNNEL 486 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~~~~l 486 (597)
..++-+..+|..|++.|+.+.|+. .++.+++.+-||+ |+.||+.. ....+++... .-...+++..|.|.|
T Consensus 379 ~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGt-------VRAwDlkR-YrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 379 TQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGT-------VRAWDLKR-YRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred ccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCe-------EEeeeecc-cceeeeecCCCceeeeEEEEcCCCCE
Confidence 999999999999999999999998 8899999986555 99999987 6667777654 346788999998665
Q ss_pred E-EeeCCC-cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC-ccccccccCCCCCCCcCc
Q 042883 487 A-SASTDS-SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS-KPAASHRFGSDADHVDDD 563 (597)
Q Consensus 487 ~-s~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 563 (597)
+ +|+.|. .|.+|++.+|+.+-.+.||.++|.+++|+|+|..|++|+.|.+|++||+-.. ..+.++.
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----------- 518 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----------- 518 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-----------
Confidence 5 455554 3999999999999999999999999999999999999999999999998654 2333343
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+...+++++|.|+|+.|++++-||.|.+||+.
T Consensus 519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred -eccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 26679999999999999999999999999974
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=225.42 Aligned_cols=249 Identities=15% Similarity=0.240 Sum_probs=208.4
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+..|+.+|.+++.+|+.++++||+.|..-.+|++.++ .......+|...|+++.|+. ++.+||+|+.+|.|+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------e~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------EFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVL 131 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-------cceeEecCCCCceEEEEEcc-CceEEEecCCCccEE
Confidence 3579999999999999999999999999999999988 45566778999999999998 899999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-----------------------------------cCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-----------------------------------GSA 449 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-----------------------------------~~~ 449 (597)
||...++.....+......+.=+.|+| ...+|+.|+.||.+ +..
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 999999887777765556667778888 88888888888887 777
Q ss_pred CCeEEEEEccCCCcceeeec---------------------------------------------------cCCCceEEE
Q 042883 450 DHHIHYYDLRNISQPLHVFN---------------------------------------------------GHKKAVSYV 478 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~~~~~---------------------------------------------------~~~~~v~~v 478 (597)
||+|++||+.+ ++++..+. .+...+.+|
T Consensus 211 dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 211 DGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred CceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 89999999987 55544432 011111222
Q ss_pred EecC---C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 479 KFLS---N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 479 ~~~~---~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
.+.| . .+.++|+.||+|.|||+...++.+.+. |..+|..+.|-+ ..+|++++.||.|++||.++|..+..+.
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-- 365 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-- 365 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe--
Confidence 2222 2 457889999999999999877666664 778899999988 7899999999999999999999998886
Q ss_pred CCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 555 SDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 555 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|.+++++|++++++|+|.|++.+||++.
T Consensus 366 ---------GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 ---------GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---------cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 579999999999999999999999999999875
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-30 Score=253.59 Aligned_cols=243 Identities=18% Similarity=0.278 Sum_probs=212.8
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-+..|.+++|+|...+++++-.+|.|++||+..+ ........|.++|.+|+|+| ...++++|+.|-.|+||+
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-------tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhh-------hHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEe
Confidence 3567889999999999999999999999999876 23334456899999999999 799999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l 486 (597)
..+.+++.++.+|-+.|..+.|++ .--+++++|+|.+ |+||+..+ ++.+..+.||...|.+..|+|. ..+
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQT-------IrIWNwqs-r~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQT-------IRIWNWQS-RKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred cccceehhhhccccceeEEeeccC-CCceEEEccCCCe-------EEEEeccC-CceEEEEecCceEEEeeccCCccceE
Confidence 999999999999999999999998 8888999997766 99999998 8999999999999999999997 899
Q ss_pred EEeeCCCcEEEEEcCCCc-----------------------------ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcE
Q 042883 487 ASASTDSSLRLWDVKENL-----------------------------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEV 537 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~-----------------------------~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i 537 (597)
+++|-|.+|+|||+..-+ ..+.+.||...|+-++|+|.-.+|++|++|..|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 999999999999985310 123456899999999999999999999999999
Q ss_pred EEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 538 FVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 538 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++|.+...+.-..-.. -+|...|.++-|+|...++++.|.|++|+|||++
T Consensus 231 KlWrmnetKaWEvDtc---------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTC---------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred eEEEeccccceeehhh---------hcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 9999765443221111 2579999999999999999999999999999985
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=7.4e-29 Score=230.62 Aligned_cols=255 Identities=19% Similarity=0.273 Sum_probs=209.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee-CC--CcE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-YD--GIV 403 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~d--g~i 403 (597)
.|...++-..|+|+|.++|+|...|.|+|||..... ...........++|..++|++++.+++++|- .+ |.+
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~-----hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKE-----HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcc-----eeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 589999999999999999999999999999986530 0111112234678999999995555555552 22 345
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
.+|| +|..+..+.+|...|++++|-|..+..++||++|+. |.+|+=.. -+--.++..|..-|.++.|+||
T Consensus 132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~-------v~ffeGPP-FKFk~s~r~HskFV~~VRysPD 201 (603)
T KOG0318|consen 132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNT-------VAFFEGPP-FKFKSSFREHSKFVNCVRYSPD 201 (603)
T ss_pred EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCe-------EEEeeCCC-eeeeecccccccceeeEEECCC
Confidence 5554 788999999999999999999988899999997665 89987432 3444556679999999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeee---CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCC-
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFR---GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDAD- 558 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 558 (597)
.++++.+.||+|.+||-.+++.+..+. +|.+.|+.++|+||+..+++++.|.+++|||+.+.+.+.++..+....
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 889999999999999999999999987 899999999999999999999999999999999988777776654210
Q ss_pred -------------------------------CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 559 -------------------------------HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 559 -------------------------------~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.....+|...|+++..+|++.+|++|+.||.|.-|++.
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 00113489999999999999999999999999999975
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.7e-29 Score=212.62 Aligned_cols=254 Identities=15% Similarity=0.277 Sum_probs=214.9
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+..+|...|.+++|+-+|..|++|+.|+++.+|++... .........+|.+.|-.++|+|...+.+++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 445678999999999999999999999999999999876 222334455788899999999988999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc----------------------------------cC
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV----------------------------------GS 448 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~----------------------------------~~ 448 (597)
|++||++.+++...+....+.+ -+.|+| ++.+++.++.|..+ ..
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred EEEEEeccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec
Confidence 9999999999998886544444 578899 77888888877665 33
Q ss_pred CCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCE
Q 042883 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEY 527 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 527 (597)
..|.|.|..... .+++..+++|.....++.|+|+ .+|++|+.|..+.+||+..--+++.+..+.-+|..++||.||++
T Consensus 167 GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 167 GLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred CCceEEEEeccc-cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence 345555555554 5778888999999999999999 78999999999999999998889999999999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc---------ccEEEEEec
Q 042883 528 IACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK---------GAIKVLVLA 596 (597)
Q Consensus 528 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d---------g~v~iwd~~ 596 (597)
||+|+.|..|-|-++.+|..+..+. +.++...|+|+|...+||-++.| |.|++|-+.
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~------------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIP------------CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeccCccceEEeEecccCCeEEEee------------ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999999999999988776 37889999999999988776443 678988765
No 47
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.9e-28 Score=245.22 Aligned_cols=250 Identities=12% Similarity=0.193 Sum_probs=194.8
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccC------CccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNE------PRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~------~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
-..|+....++++..+++++.+..+..|+..++... ......+....+|.+.|++++|+|.++++|++|+.||.
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345555666677667777777777778876544210 01111223456899999999999966789999999999
Q ss_pred EEEEeCCCC-------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCce
Q 042883 403 VTIWDVTTS-------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV 475 (597)
Q Consensus 403 i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 475 (597)
|+|||+.++ ..+..+.+|...|.+++|+|.++++|++++.|+. |+|||+.+ +..+..+.+|...|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt-------VrIWDl~t-g~~~~~l~~h~~~V 171 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV-------VNVWDVER-GKAVEVIKCHSDQI 171 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE-------EEEEECCC-CeEEEEEcCCCCce
Confidence 999999764 3466788999999999999965689999986554 99999997 67788888999999
Q ss_pred EEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCce-eEEEEeecCCEEEEEe----CCCcEEEEEccCCc-cc
Q 042883 476 SYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEK-NFVGLTVNNEYIACGS----ETNEVFVYHKAISK-PA 548 (597)
Q Consensus 476 ~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-~~v~~s~~g~~l~~~~----~d~~i~iwd~~~~~-~~ 548 (597)
.+++|+|+ ..|++++.|+.|+|||+++++.+..+.+|.+.. ..+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 99999999 789999999999999999999999998887653 4678888887777654 47899999998654 33
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEec
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
..... ++...+....|++++.+|++|+ .||.|++||+.
T Consensus 252 ~~~~~----------d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 252 STVDL----------DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred eEecc----------CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 22221 1244566778999999999887 59999999986
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.1e-28 Score=235.14 Aligned_cols=242 Identities=23% Similarity=0.399 Sum_probs=211.1
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
...|...+..+.|+|+++++++++.+|.|++|++... ........|...+.++.|++ ++.++++++.||.|.
T Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~ 118 (289)
T cd00200 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIK 118 (289)
T ss_pred EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEE
Confidence 3468888999999999999999999999999999875 22333345677899999999 578888888899999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+||+.+++....+..|...|.++.|+| ++.++++++.|+ .|++||++. ++.+..+..|...+.++.|+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~-------~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~ 189 (289)
T cd00200 119 VWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDG-------TIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDG 189 (289)
T ss_pred EEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCC-------cEEEEEccc-cccceeEecCccccceEEECCCc
Confidence 999998888888888999999999999 678888877444 499999986 6777888888889999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
..+++++.|+.|++||++.++.+..+..|...+.++.|+|++.++++++.||.|++||+.+++....+.
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----------- 258 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----------- 258 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-----------
Confidence 589999999999999999999888888888899999999999899888889999999999877766654
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|...|.+++|+|++.+|++++.||.|++|+
T Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 2477899999999999999999999999996
No 49
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=231.35 Aligned_cols=238 Identities=21% Similarity=0.330 Sum_probs=207.0
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-...|+++.|-.||.++|.|...|.|+|||..+. ........|..++..+.|+|+++.++++|+.|+.+++||
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccH-------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 4568999999999999999999999999996542 123344578899999999999999999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l 486 (597)
+.+......+.+|.+.|.+.+|+|..+.+++|||+||. |++||++.....+..+. |..+|.++.+-|. +.|
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~-------vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK-------VRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLI 211 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce-------EEEEEeccCCceeEEec-CCCceeeEEEcCCCCEE
Confidence 99888766889999999999999988889999997665 99999998555666665 8999999999999 666
Q ss_pred EEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCC
Q 042883 487 ASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h 565 (597)
++++. ..|+|||+.+ ++.+..+..|...|+|+.+..++..|++|+-|+.|++||+.+.+.+..+.+
T Consensus 212 asAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~------------ 278 (487)
T KOG0310|consen 212 ASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY------------ 278 (487)
T ss_pred EEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec------------
Confidence 66654 5899999995 555555666999999999999999999999999999999999999998887
Q ss_pred CcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 566 SYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
.++|.+++.+|+++.++.|..||.+.+-
T Consensus 279 ~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 279 PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceeeEEecCCCceEEEecccceeeee
Confidence 7789999999999999999999988654
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-29 Score=244.65 Aligned_cols=249 Identities=15% Similarity=0.224 Sum_probs=200.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccC----------------------------cc--------CCc----
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSV----------------------------VN--------EPR---- 366 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~----------------------------~~--------~~~---- 366 (597)
.|.+.|+++.|++||+|||+||.||.|+||.+... .. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998760 00 000
Q ss_pred ------------cCCCC-ceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCC
Q 042883 367 ------------DVHYP-MVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTE 433 (597)
Q Consensus 367 ------------~~~~~-~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 433 (597)
....| ....+|.+.|..+.|+. +++|++++.|.+|++|++....++..| .|.+.|++|+|+|.|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccC
Confidence 00011 12347888999999995 789999999999999999999999988 699999999999999
Q ss_pred CceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCC
Q 042883 434 PSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGH 512 (597)
Q Consensus 434 ~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 512 (597)
.++|++|+-|+. |+||++.. ..+..+..-..-|++++|.|+ ...++|+.+|.+++|+....+....+..+
T Consensus 422 DryFiSGSLD~K-------vRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 422 DRYFISGSLDGK-------VRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred CCcEeecccccc-------eEEeecCc--CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 999999996665 99999985 445544444588999999999 66889999999999999887665544311
Q ss_pred --------CCceeEEEEeecCC-EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 513 --------TNEKNFVGLTVNNE-YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 513 --------~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
...|+++.|.|... .|++.+.|..|+|||.+...++..++... ....-....|+.||++|++
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~---------n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR---------NTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc---------cCCcceeeeEccCCCEEEE
Confidence 22699999988643 57778899999999998888877766321 1334456679999999999
Q ss_pred ecCcccEEEEEec
Q 042883 584 ANRKGAIKVLVLA 596 (597)
Q Consensus 584 ~~~dg~v~iwd~~ 596 (597)
|+.|..|+||+++
T Consensus 564 ~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 564 ASEDSWVYIWKND 576 (712)
T ss_pred eecCceEEEEeCC
Confidence 9999999999974
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-29 Score=211.74 Aligned_cols=240 Identities=21% Similarity=0.336 Sum_probs=196.2
Q ss_pred EEEEEcC-CCCEEEEe-------eCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 333 SSIEFDR-DDELFASA-------GVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 333 ~~i~~~~-~~~~l~t~-------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+++.||| -.++||++ ...|++.|.++... ........+.-...+..|+|+++..+.+++++.||+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~-----~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP-----KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCC-----CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEE
Confidence 5788999 22334333 23788999998643 01122233445678999999998889999999999999
Q ss_pred EEeCCC-CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 405 IWDVTT-SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 405 iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
|||+.. ..++..++.|...|.++.|++..+..+++++ +|++|++||... .+.+.++.+|..-|...+|+|.
T Consensus 87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS-------WD~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS-------WDGTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPH 158 (311)
T ss_pred EeccCCCCcchhHHHhhhhheEEeccccccceeEEeec-------cCCceEeecCCC-CcceEeecCCccEEEEEecCCC
Confidence 999643 3578888999999999999998888899888 455599999987 7889999999999999999998
Q ss_pred --CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCc-cccccccCCCCCC
Q 042883 484 --NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISK-PAASHRFGSDADH 559 (597)
Q Consensus 484 --~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~ 559 (597)
+.++++|.|+++++||++.......+..|...+.++.|+.. ..+|++|+.|+.|++||+++.+ ++..+
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-------- 230 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-------- 230 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--------
Confidence 89999999999999999985555558999999999999875 5688999999999999998755 33333
Q ss_pred CcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEec
Q 042883 560 VDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~ 596 (597)
.+|...|..|.|||.. ..|++++.|-+++|||..
T Consensus 231 ---~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 231 ---NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ---cCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 2579999999999965 578999999999999974
No 52
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.8e-30 Score=216.50 Aligned_cols=245 Identities=14% Similarity=0.248 Sum_probs=213.5
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
+...+|.+.|++..++.+....|+++.|-+-+|||.-++ ..+..+.|..-|.+++|+. +.+.|++|+.+..
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--------delhsf~hkhivk~~af~~-ds~~lltgg~ekl 123 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--------DELHSFEHKHIVKAVAFSQ-DSNYLLTGGQEKL 123 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--------hhhhhhhhhheeeeEEecc-cchhhhccchHHH
Confidence 345589999999999999999999999999999999887 4556667888899999998 7899999999999
Q ss_pred EEEEeCCCC-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEec
Q 042883 403 VTIWDVTTS-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 403 i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 481 (597)
++|||++.. .+...+.+|.+.|..+.|.. ..+.|+++.+|++ |++||.++ +..+.++. ...+|+++-++
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~t-------VRLWD~rT-gt~v~sL~-~~s~VtSlEvs 193 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKT-------VRLWDHRT-GTEVQSLE-FNSPVTSLEVS 193 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCc-------eEEEEecc-CcEEEEEe-cCCCCcceeec
Confidence 999999764 45677889999999999997 6666666675555 99999998 77777775 56789999999
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc
Q 042883 482 SNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD 561 (597)
Q Consensus 482 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 561 (597)
+++.+++....+.|.+||..+-.+++.+.. ...|.+.+++|+..++++|+.|..++.||..++..+..+.
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--------- 263 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--------- 263 (334)
T ss_pred cCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc---------
Confidence 999999999999999999999888888875 4457889999999999999999999999999998887753
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+|.++|.+|.|+|+|...++|+.||+|+||.+.+
T Consensus 264 -kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 264 -KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred -cCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 25799999999999999999999999999998753
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.4e-29 Score=222.11 Aligned_cols=247 Identities=15% Similarity=0.273 Sum_probs=204.8
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC--CCEEEEeeCC
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT--KNLIASSDYD 400 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~--~~~l~s~~~d 400 (597)
...+-|.+.|.++... +.+|++|++||.++|||..+. ......+|.++|.+++|...+ ...|++++.|
T Consensus 99 l~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred cccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc--------eEEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence 4455699999999887 789999999999999998875 556677899999999986422 3369999999
Q ss_pred CcEEEEeCCCCeee----eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC----------------
Q 042883 401 GIVTIWDVTTSQSV----MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN---------------- 460 (597)
Q Consensus 401 g~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~---------------- 460 (597)
.++++|-.+.+..+ ....||...|.++...+ ++..+++|+.| .+|.||+..+
T Consensus 169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D-------~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 169 QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWD-------TMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred ceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeeccc-------ceeeecccCCCccccccccchhhhhh
Confidence 99999998776432 33459999999999998 99999999855 4599999321
Q ss_pred --------CCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe
Q 042883 461 --------ISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 461 --------~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
.+.++.++.+|..+|.+|.|++...++++|.|.+|+.||+.++..+.++.+ ...++++.++|...+|++|+
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC
Confidence 124677788999999999999989999999999999999999998888875 45679999999999999999
Q ss_pred CCCcEEEEEccCCccc-cccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEecC
Q 042883 533 ETNEVFVYHKAISKPA-ASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 533 ~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~~~ 597 (597)
.|..|++||.+++.-. ....+ .+|...|.++.|+|... .|++|+.||++++||+++
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~---------~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSL---------IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCCceeecCCCCCCCceeEEee---------ecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 9999999999876432 22222 25799999999999765 578899999999999974
No 54
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.4e-28 Score=242.68 Aligned_cols=234 Identities=15% Similarity=0.213 Sum_probs=185.1
Q ss_pred ccCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|.+.|++++|+| ++.+|++|+.|++|+|||+.................+|...|.+++|+|.++++|++|+.|+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 568999999999999 8899999999999999999764211111112234557889999999999656899999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc-eEEEEecC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA-VSYVKFLS 482 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-v~~v~~~~ 482 (597)
+|||+.++..+..+.+|...|.+++|+| ++.+|++++.|+. |++||+++ +..+..+.+|.+. +..+.|.+
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~-------IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKK-------LNIIDPRD-GTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCE-------EEEEECCC-CcEEEEEecCCCCcceEEEEcC
Confidence 9999999999999999999999999999 8899999986555 99999998 6677788888764 45677888
Q ss_pred C-CeEEEee----CCCcEEEEEcCCCc-ceeeeeCC-CCceeEEEEeecCCEEEEEe-CCCcEEEEEccCCccccccccC
Q 042883 483 N-NELASAS----TDSSLRLWDVKENL-PLHTFRGH-TNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 483 ~-~~l~s~~----~d~~v~iwd~~~~~-~~~~~~~~-~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
+ +.+++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++|+ .|+.|++||+.+++++....+.
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence 8 6777654 47899999998754 44444333 33455667899999998887 5999999999998877665443
Q ss_pred CCCCCCcCcCCCcceEEEEEccC
Q 042883 555 SDADHVDDDMGSYFISAVCWKSD 577 (597)
Q Consensus 555 ~~~~~~~~~~h~~~i~~v~~~~~ 577 (597)
+..++.+++|.|.
T Consensus 302 ----------s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 ----------SVEPHKGLCMMPK 314 (493)
T ss_pred ----------CCCCCcceEeccc
Confidence 2556777888774
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-28 Score=236.24 Aligned_cols=236 Identities=17% Similarity=0.278 Sum_probs=205.0
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEec-CCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP-TRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
.+.|+++.|+++|.+|++|..+|.|.|||.... ........ |...|.+++|+ +..+.+|+.||.|..+|
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-------k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-------KKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHD 286 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-------cccccccCCcCceeEEEecc---CceEEEecCCCcEEEEE
Confidence 789999999999999999999999999998876 22222223 78999999998 57899999999999999
Q ss_pred CCCCeeeeE-EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--C
Q 042883 408 VTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--N 484 (597)
Q Consensus 408 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~ 484 (597)
++..+.... +.+|...|..+.|++ ++.++++|+.|+. +.|||... ..+...+..|.++|.+++|+|- +
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~-------~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNV-------VFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred EecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccc-------eEeccCCC-ccccEEEeccceeeeEeeeCCCccC
Confidence 998765544 889999999999999 9999999997665 99999976 6788888899999999999998 8
Q ss_pred eEEEee--CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEE--eCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 485 ELASAS--TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACG--SETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 485 ~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
.||+|+ .|+.|++||..++..+..+.. .+.|.++.|++..+-|+++ ..++.|.||+..+.+.+..+.
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-------- 428 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-------- 428 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--------
Confidence 899865 799999999999999888864 6789999999998655553 457899999999877766664
Q ss_pred cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+|...|..++++|||..+++|+.|.++++|++
T Consensus 429 ---gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 429 ---GHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred ---CCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 57999999999999999999999999999987
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=8.6e-29 Score=215.33 Aligned_cols=266 Identities=16% Similarity=0.236 Sum_probs=209.7
Q ss_pred eccccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCcc----------CCccC-CCCceEecCCCceeEEEEec
Q 042883 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVN----------EPRDV-HYPMVEMPTRSKLSCLSWNK 388 (597)
Q Consensus 320 ~~~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~----------~~~~~-~~~~~~~~~~~~i~~v~~~~ 388 (597)
.+...+..|.+++++.+|++||.++|||+.|..|+|+|+..... ..... ......+.|...|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 33445567999999999999999999999999999999873210 01111 11233457889999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee
Q 042883 389 YTKNLIASSDYDGIVTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH 466 (597)
Q Consensus 389 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~ 466 (597)
...+|++|+.|++|++||.......+.++ ....+|.++.|+| .|.+++.|.+-.+ +++||+.+ .++..
T Consensus 183 -re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~-------~rlYdv~T-~Qcfv 252 (430)
T KOG0640|consen 183 -RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPT-------LRLYDVNT-YQCFV 252 (430)
T ss_pred -hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCc-------eeEEeccc-eeEee
Confidence 78999999999999999986543222221 2356899999999 8899988875444 89999997 33332
Q ss_pred ee---ccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeee-CCC-CceeEEEEeecCCEEEEEeCCCcEEEE
Q 042883 467 VF---NGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR-GHT-NEKNFVGLTVNNEYIACGSETNEVFVY 540 (597)
Q Consensus 467 ~~---~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~-~~v~~v~~s~~g~~l~~~~~d~~i~iw 540 (597)
.- .+|.+.|++|.+++. ++.++++.||.|+|||--+++++.++. .|. ..|.+..|..+|+||++.|.|..|++|
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 22 358899999999999 788999999999999999999998885 454 478889999999999999999999999
Q ss_pred EccCCccccccccCCCC-----------CC---------------------------CcCcCCCcceEEEEEccCCCeEE
Q 042883 541 HKAISKPAASHRFGSDA-----------DH---------------------------VDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 541 d~~~~~~~~~~~~~~~~-----------~~---------------------------~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
.+.+++.+..+...... .+ ...-+|.+.+..+..+|.+.-++
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee
Confidence 99999887766543100 00 01123899999999999999999
Q ss_pred EecCcccEEEEEe
Q 042883 583 TANRKGAIKVLVL 595 (597)
Q Consensus 583 s~~~dg~v~iwd~ 595 (597)
+++.|-.+++|--
T Consensus 413 TcsdD~raRFWyr 425 (430)
T KOG0640|consen 413 TCSDDFRARFWYR 425 (430)
T ss_pred eecccceeeeeee
Confidence 9999999999953
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.3e-30 Score=223.62 Aligned_cols=248 Identities=19% Similarity=0.330 Sum_probs=207.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCc-cCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPR-DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
|+..+.+-|..|+|||++|++|+.||.|.+|++.+++.... .........-+..+|.|+.|+. +..++++|+.||.|+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEE
Confidence 56777888999999999999999999999999988732211 1111123344678999999998 789999999999999
Q ss_pred EEeCCCCeeeeEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 405 IWDVTTSQSVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
||.+.+|.+++.|. .|...|+++.|+. ++..+++++.|. ++++--+.+ ++.++.+.+|.+.|+...|.++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~-------tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQ-------TVRIHGLKS-GKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEcc-Ccchhhcccccc-------eEEEecccc-chhHHHhcCccccccceEEcCC
Confidence 99999999999987 7999999999998 778888888555 499999998 8999999999999999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeeeC-----------------------------------------------CCCc
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFRG-----------------------------------------------HTNE 515 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----------------------------------------------~~~~ 515 (597)
+.+++++.||+|++|+..+.+++.+|+. ..+.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD 439 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence 8899999999999999877554443321 0112
Q ss_pred eeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 516 KNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 516 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.-+.+.+|.|.++++.+.|+.++.|...+|+.-.++.. |...|-+++.+|..+.|++-+.||.+++|.
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-----------hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-----------HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-----------ccccccccccCcccchhhhhcccchhhhcC
Confidence 23456789999999999999999999999988877764 577888999999999999999999999994
No 58
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2e-27 Score=238.60 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=174.0
Q ss_pred eeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe--------eeeEEe
Q 042883 347 AGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ--------SVMEYE 418 (597)
Q Consensus 347 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~ 418 (597)
|+.++.|++|+.... .......+|...|.+++|+|+++++|++|+.||.|+|||+.++. .+..+.
T Consensus 50 GG~~gvI~L~~~~r~-------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CCceeEEEeeecCCC-------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 566788999987653 22334557889999999999668899999999999999997542 344677
Q ss_pred eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEE
Q 042883 419 EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRL 497 (597)
Q Consensus 419 ~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~i 497 (597)
+|...|.+++|+|.+..++++++.|+. |+|||+++ +..+..+. |...|.+++|+|+ ..|++++.|+.|+|
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~Dgt-------IrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSF-------VNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCe-------EEEEECCC-CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence 899999999999955556788886554 99999997 55555554 5678999999999 67888889999999
Q ss_pred EEcCCCcceeeeeCCCCceeEE-----EEeecCCEEEEEeCCC----cEEEEEccC-CccccccccCCCCCCCcCcCCCc
Q 042883 498 WDVKENLPLHTFRGHTNEKNFV-----GLTVNNEYIACGSETN----EVFVYHKAI-SKPAASHRFGSDADHVDDDMGSY 567 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v-----~~s~~g~~l~~~~~d~----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~ 567 (597)
||+++++.+..+.+|.+.+... .|++++.+|+++|.|+ .|+|||++. ++++....... +.+
T Consensus 194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~---------~~~ 264 (568)
T PTZ00420 194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN---------ASA 264 (568)
T ss_pred EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---------Ccc
Confidence 9999999999999998765433 3457888999888764 799999985 56665544321 133
Q ss_pred ceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 568 FISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 568 ~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+...-..++|.++++|+.|+.|++|++.
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 33333345568889999999999999985
No 59
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=237.81 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=213.6
Q ss_pred cccCCCCcEEEEEEc-CCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFD-RDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~-~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+.|..+.|.++.|- |..+++|++++.+.+++|++.+. ......+|...|.+++... ++.+|++|+.|.+
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--------~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~s 388 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--------YCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKS 388 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC--------ceEEEeCchhheeeeeecc-cCcEEEEecCCce
Confidence 455778889998874 67789999999999999988876 3337778999999999433 5689999999999
Q ss_pred EEEEeCCCC----eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC--Cc--ce----eeecc
Q 042883 403 VTIWDVTTS----QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI--SQ--PL----HVFNG 470 (597)
Q Consensus 403 i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~--~~--~~----~~~~~ 470 (597)
+++|.++.+ .++....+|...|.+++++..+..+|+++|.|++ +++|++... .. .+ .+...
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t-------lK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT-------LKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce-------EEEecCCCcccccccceehhhHHHHh
Confidence 999987443 2455667999999999998877789999997666 999999751 11 11 12346
Q ss_pred CCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 471 HKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 471 ~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
|...|++|+++|+ ..|+|||.|.+.+||++.......++.||...|.+|.|+|..+.++++|.|++|+||.+.+...+.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
++. +|...|..+.|-.+|..|++++.||-|+||++.+
T Consensus 542 T~e-----------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 542 TFE-----------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred eec-----------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 886 5799999999999999999999999999999864
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=9e-28 Score=214.78 Aligned_cols=245 Identities=20% Similarity=0.312 Sum_probs=200.9
Q ss_pred ccCCCCcEEEEEEcCCCC---EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 325 LFHAANIISSIEFDRDDE---LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~---~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+.||.++|.+++|...+. .|++++.|.++++|.++.+..... ......+|...|-+|+..+ ++..+++|+.|.
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~---~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK---ALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDT 215 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---HHhHhcccccceeEEEecC-CCCeEEeecccc
Confidence 458999999999875443 599999999999999887622221 1223338999999999998 899999999999
Q ss_pred cEEEEeCCC-------------------------CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 402 IVTIWDVTT-------------------------SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 402 ~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
.|.||+..+ +.++.++.+|..+|.++.|++ ...+.+++. |.+|+.|
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~Sw-------DHTIk~W 286 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSW-------DHTIKVW 286 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecc-------cceEEEE
Confidence 999999321 135567789999999999995 778888884 5559999
Q ss_pred EccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc---ceeeeeCCCCceeEEEEeecC-CEEEEE
Q 042883 457 DLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL---PLHTFRGHTNEKNFVGLTVNN-EYIACG 531 (597)
Q Consensus 457 d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~v~~s~~g-~~l~~~ 531 (597)
|+.+ +.....+. ....++++.++|. .+|++|+.|..+++||.|++. +.+++.+|.+.|.++.|+|.. .+|++|
T Consensus 287 Dlet-g~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 287 DLET-GGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred Eeec-ccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 9998 55555555 3567899999999 889999999999999999853 567888999999999999975 467889
Q ss_pred eCCCcEEEEEccCCc-cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 532 SETNEVFVYHKAISK-PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 532 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+.|+++++||+++.+ ++..+. +|...|.++.|+ ++.+|++||.|++|+|+.-+
T Consensus 365 S~D~t~klWDvRS~k~plydI~-----------~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTKAPLYDIA-----------GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ecCCeEEEEEeccCCCcceeec-----------cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999999877 776664 468999999998 45689999999999998643
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7e-28 Score=236.97 Aligned_cols=241 Identities=18% Similarity=0.320 Sum_probs=210.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.|.++|+.+.|+|.+.+|++|++|-.|+||++... .......+|-..|..+.|++ .-..|++++.|.+|+||
T Consensus 49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-------rclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-------RCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIW 120 (1202)
T ss_pred ccCCccceeeecCCCCeEEecCCccEEEEEecccc-------eehhhhccccceeEEeeccC-CCceEEEccCCCeEEEE
Confidence 59999999999999999999999999999999876 55566778999999999998 78899999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC-------CC-----------------
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN-------IS----------------- 462 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~-------~~----------------- 462 (597)
+..+++++..+.||...|.+..|+| ....++++|-|.+ |+|||+.. ++
T Consensus 121 Nwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQT-------VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg 192 (1202)
T KOG0292|consen 121 NWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQT-------VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFG 192 (1202)
T ss_pred eccCCceEEEEecCceEEEeeccCC-ccceEEEecccce-------EEEEeecchhccCCCCCCchhhhhccccchhhcC
Confidence 9999999999999999999999999 8899999996655 99999863 11
Q ss_pred ----cceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc--ceeeeeCCCCceeEEEEeecCCEEEEEeCCC
Q 042883 463 ----QPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL--PLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535 (597)
Q Consensus 463 ----~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 535 (597)
-.-..+.||...|+-++|+|. ..|++|+.|..|++|.+...+ .+-+..+|.+.|+++-|+|...+|++.|.|+
T Consensus 193 ~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 193 QTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred CcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence 001345689999999999999 899999999999999987644 3566789999999999999999999999999
Q ss_pred cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 536 EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 536 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.|+|||+...+.+.++... ....+.++-+|..+++++|...| +.||-+
T Consensus 273 sirVwDm~kRt~v~tfrre-----------ndRFW~laahP~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 273 SIRVWDMTKRTSVQTFRRE-----------NDRFWILAAHPELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred cEEEEecccccceeeeecc-----------CCeEEEEEecCCcceeeeecCCc-eEEEEE
Confidence 9999999999999888643 66789999999999888876655 456655
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-26 Score=204.09 Aligned_cols=243 Identities=16% Similarity=0.213 Sum_probs=190.9
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC--CCcEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY--DGIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~--dg~i~i 405 (597)
..+.|+++.|+++|.++++++.|.+++|||...+ ........+...+..+.|... .+.++.++. |.+|+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-------~~~~ti~skkyG~~~~~Fth~-~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-------KQVKTINSKKYGVDLACFTHH-SNTVIHSSTKEDDTIRY 84 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-------ceeeEeecccccccEEEEecC-CceEEEccCCCCCceEE
Confidence 4778999999999999999999999999999887 233333345567778888763 444555544 889999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCe
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE 485 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 485 (597)
.++.+++.++.|.||...|+++..+| .+..+++++.|++ |++||++. .++...+.. ..-...+|+|+|.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~t-------vrLWDlR~-~~cqg~l~~--~~~pi~AfDp~GL 153 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKT-------VRLWDLRV-KKCQGLLNL--SGRPIAAFDPEGL 153 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCe-------EEeeEecC-CCCceEEec--CCCcceeECCCCc
Confidence 99999999999999999999999999 7799999986555 99999996 455544432 2334678899977
Q ss_pred EEE-eeCCCcEEEEEcCC--CcceeeeeC---CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 486 LAS-ASTDSSLRLWDVKE--NLPLHTFRG---HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 486 l~s-~~~d~~v~iwd~~~--~~~~~~~~~---~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
+++ +.....|++||+|. ..+..++.. .....+.+.|||||++|+.++..+.+++.|.-+|.....+......
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~-- 231 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA-- 231 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC--
Confidence 554 44444999999997 345555543 3556789999999999999999999999999999877766643211
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
..-..+..|+||++++++|+.||+|++|++.+
T Consensus 232 ------~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 232 ------GNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred ------CCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 11225678999999999999999999999864
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=223.33 Aligned_cols=241 Identities=21% Similarity=0.291 Sum_probs=200.9
Q ss_pred CCCCcEEEEEEcCCCCE-EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDEL-FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~-l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
...+.|.+++|+|...+ +|+.+ .-.|.||+..+. ............++++.|-. +|.++++|...|.|+|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~-------~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR-------SVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKV 94 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchh-------hhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEE
Confidence 34568999999995543 44444 567999998765 11122334567899999998 8999999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-- 483 (597)
||+.+...+..+.+|..+|..+.|+|.++..+++|++|+. +++||+.+ ......+.+|.+.|.+.+|+|.
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v-------~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV-------VKYWDLST-AYVQAELSGHTDYVRCGDISPAND 166 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCce-------EEEEEcCC-cEEEEEecCCcceeEeeccccCCC
Confidence 9987777788899999999999999999999999997766 89999997 4445578899999999999998
Q ss_pred CeEEEeeCCCcEEEEEcCCC-cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 484 NELASASTDSSLRLWDVKEN-LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
..++|||.||.|++||++.. ..+..+ .|..+|.++.+-|.|..|++++. +.|+|||+.+|........
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~--------- 235 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF--------- 235 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh---------
Confidence 57999999999999999986 566666 48999999999999999998864 6799999987665544432
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|...|+++++..++..|++|+-||.|+|||+.
T Consensus 236 -~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 236 -NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred -cccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 368899999999999999999999999999964
No 64
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.6e-27 Score=217.15 Aligned_cols=260 Identities=19% Similarity=0.286 Sum_probs=213.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCC---------CCceE--ecCCCceeEEEEecCCCCEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVH---------YPMVE--MPTRSKLSCLSWNKYTKNLI 394 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~---------~~~~~--~~~~~~i~~v~~~~~~~~~l 394 (597)
..|.-+|.+++++|++.+.++++.+|+|.=|++.++........ .+... ..|...+.+++.++ ++.+|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCcEE
Confidence 35888999999999999999999999999999988743211111 11111 26788899999999 89999
Q ss_pred EEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc
Q 042883 395 ASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA 474 (597)
Q Consensus 395 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 474 (597)
++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-. +..-+++++.|+. |++|++.. ...+.++.+|.+.
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drs-------vkvw~~~~-~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRS-------VKVWSIDQ-LSYVETLYGHQDG 288 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCc-------eEEEehhH-hHHHHHHhCCccc
Confidence 9999999999999999999999999999999999986 6777888886555 99999997 6778889999999
Q ss_pred eEEEEecCCCeEE-EeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccccc
Q 042883 475 VSYVKFLSNNELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRF 553 (597)
Q Consensus 475 v~~v~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 553 (597)
|.++....-..++ +|+.|+++++|++. ......+.++.+.+-+++|-. ...+++|+.||.|.+|++...+++.+...
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred eeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 9999877665555 45599999999995 344456678888899999965 45788999999999999999999988877
Q ss_pred CCCCCCC-cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 554 GSDADHV-DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 554 ~~~~~~~-~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
....... ..-.+..+|++++..|...++++|+.+|.|++|-+.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 6533222 2223456999999999999999999999999998753
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=217.54 Aligned_cols=244 Identities=17% Similarity=0.223 Sum_probs=195.4
Q ss_pred ccccCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 323 GDLFHAANIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+.+.||.+.|.+++=+|+. ..+++|+.||.|+|||+... ........|.+.|.+|++.. ..+++++.|.
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDK 129 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-------ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDK 129 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-------hhhheeecccCceeeEEecc---cceEEecCCc
Confidence 4567999999999999976 78999999999999999876 33445556778888888874 5566777777
Q ss_pred cEEEEeCC--------------------------------------CCeeeeEEeeccceeEEEEeCCCCCceEEeecCC
Q 042883 402 IVTIWDVT--------------------------------------TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD 443 (597)
Q Consensus 402 ~i~iwd~~--------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 443 (597)
+|+.|.+. ...++..+.--.+.|.++.|+|....+|++++.|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 77777532 2223444444456788899999778888888755
Q ss_pred CcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEE
Q 042883 444 CKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGL 521 (597)
Q Consensus 444 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~ 521 (597)
+. |.+||++. ..++.... -...-+.++|+|. -.|++++.|..++.||++. ..++..+.+|.+.|.+|.|
T Consensus 210 rs-------IvLyD~R~-~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 210 RS-------IVLYDLRQ-ASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred Cc-------eEEEeccc-CCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc
Confidence 54 99999998 66665543 2344578999998 5588999999999999997 5688889999999999999
Q ss_pred eecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 522 TVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 522 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
||.|+-+++||.|.+|+||..+.+.....+.... -..|.+|.|+.|.+|+++|++|+.|++|.-
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR----------Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR----------MQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhHhh----------hheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999999999999998876655443322 556999999999999999999999999964
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=206.41 Aligned_cols=204 Identities=15% Similarity=0.258 Sum_probs=181.1
Q ss_pred ceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC-CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCC
Q 042883 372 MVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT-SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 372 ~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d 450 (597)
....+|.+.|+.+.|+| ++..|++|+.|..|.+|++.. -+....+++|.+.|..+.|.+ +++.++++|.|.+
T Consensus 41 m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~----- 113 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKT----- 113 (338)
T ss_pred hhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCce-----
Confidence 45567899999999999 899999999999999999643 355677889999999999998 8999999997666
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEE
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 528 (597)
++.||.++ ++.+..+++|..-|+++.-+.- ..+.+++.|+++++||+|+...++++.. .-.++++.|...+..+
T Consensus 114 --v~~wD~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 114 --VRGWDAET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQV 189 (338)
T ss_pred --EEEEeccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccce
Confidence 99999998 8899999999999999983333 4477899999999999999988888853 5678999999999999
Q ss_pred EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 529 ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 529 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+|+-|+.|++||++.+.....+. +|..+|+.+..+|+|.++.+-+.|.++++||+.|
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~ls-----------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTLS-----------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred eeccccCceeeeccccCcceEEee-----------cccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 999999999999999888887775 5799999999999999999999999999999975
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=229.60 Aligned_cols=249 Identities=14% Similarity=0.199 Sum_probs=214.0
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
....||.+.|++++++.+...+++|+ .+.|+||+..+. ..+..... ..+.+..|-| +++++++|...|.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~--------kciRTi~~-~y~l~~~Fvp-gd~~Iv~G~k~Ge 435 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL--------KCIRTITC-GYILASKFVP-GDRYIVLGTKNGE 435 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc--------ceeEEecc-ccEEEEEecC-CCceEEEeccCCc
Confidence 34568999999999999888777775 678999999876 23333332 3788899999 8999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------------------------------
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------------ 446 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------------ 446 (597)
+.+||+.+...+.++..|.+.|++++.+| ++..+++||.|.+|
T Consensus 436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v 514 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV 514 (888)
T ss_pred eEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE
Confidence 99999999999999999999999999999 89999999987775
Q ss_pred -----------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCC
Q 042883 447 -----------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTN 514 (597)
Q Consensus 447 -----------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 514 (597)
+..|++++||-+.+ .+....+.||.-+|.++..+|+ ..++|||.|..|+||-+.-|.+-+++.+|..
T Consensus 515 ~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 515 SVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 34444445554444 3344556789999999999999 8899999999999999999999999999999
Q ss_pred ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 515 EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|.++.|-|...++.++|.|+.|+-||-..-+.+..+. +|...|++++.+|+|.++++++.|.+|++|.
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-----------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-----------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-----------cchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999999987777766664 4789999999999999999999999999997
Q ss_pred e
Q 042883 595 L 595 (597)
Q Consensus 595 ~ 595 (597)
.
T Consensus 663 ~ 663 (888)
T KOG0306|consen 663 R 663 (888)
T ss_pred c
Confidence 4
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=5.6e-27 Score=234.72 Aligned_cols=238 Identities=21% Similarity=0.324 Sum_probs=211.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.||.+.|++++|..-+.++++|+.|.+++|||..++ .......+|.+.|.++...+ ..+++|+.|.+|+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVK 314 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-------cEEEEecCCCceEEEEEccC---ceEeeccCCceEE
Confidence 6699999999999987889999999999999999887 45556667999999988764 6788899999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN 484 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~ 484 (597)
+|++.++..+..+.+|.++|.++..+ +.++++|+.|+. |.+||+.+ ++.+..+.+|...|.++.+.+..
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~-------v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~~ 383 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGT-------VKVWDPRT-GKCLKSLSGHTGRVYSLIVDSEN 383 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec---CCEEEEEecCce-------EEEEEhhh-ceeeeeecCCcceEEEEEecCcc
Confidence 99999999999999999999999986 688999986554 99999997 89999999999999999887768
Q ss_pred eEEEeeCCCcEEEEEcCCC-cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 485 ELASASTDSSLRLWDVKEN-LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
.+++|+.|++|++||+++. +++.++.+|...+..+.+ .+++|++++.|+.|++||..+++.+..+...
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--------- 452 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR--------- 452 (537)
T ss_pred eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC---------
Confidence 8999999999999999999 999999999998866655 6889999999999999999999998887642
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
|...|+.+++. ...+++++.||.+++||+.+
T Consensus 453 -~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 -HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 36778888876 46789999999999999864
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=9.8e-27 Score=207.23 Aligned_cols=210 Identities=21% Similarity=0.377 Sum_probs=188.0
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.+|+..|+++.|+.+|.+||||+.+|.|+||+..++ .........-..|.-+.|+| ...+|+.|+.||.
T Consensus 100 ~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-------~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGs 171 (399)
T KOG0296|consen 100 GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-------GEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGS 171 (399)
T ss_pred eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-------ceEEEeecccCceEEEEecc-cccEEEeecCCCc
Confidence 445689999999999999999999999999999999987 22222223445677799999 8999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------------------------------
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------------ 446 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------------ 446 (597)
+-+|.+.++...+.+.+|+.++++-.|.| +|+.++++..||++
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred EEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 99999998888899999999999999999 79999999999998
Q ss_pred -----------------------------------------------------cCCCCeEEEEEccCCCcceeeeccCCC
Q 042883 447 -----------------------------------------------------GSADHHIHYYDLRNISQPLHVFNGHKK 473 (597)
Q Consensus 447 -----------------------------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~ 473 (597)
|+-||+|.|||+.. .. ++..-.|..
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~-~R~~c~he~ 328 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-ST-LRHICEHED 328 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-ch-hheeccCCC
Confidence 99999999999986 44 444445899
Q ss_pred ceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 474 AVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 474 ~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
+|..+.|.+..+|++++.+|.|++||.|+|+.+..+.||...|..++++|++++++++|.|++.+||+..
T Consensus 329 ~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 329 GVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999998899999999999999999999999999999999999999999999999999999999864
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=200.81 Aligned_cols=237 Identities=13% Similarity=0.216 Sum_probs=191.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC-CCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT-KNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~-~~~l~s~~~dg~i~i 405 (597)
.|.++|++++. ++.++|+|+.|-+|+|||+... ........|.+.|+++.|.+.- .+.|++|+.||.|.+
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~-------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKR-------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccch-------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 59999999999 5889999999999999999876 4445566789999999999832 238999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-C
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~ 484 (597)
|+......+..+++|.+.|++++++| .+.+.++.+.|+. +++||+-. ++.-...+ -....+.|.|+|. .
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~-------lr~WNLV~-Gr~a~v~~-L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQV-------LRTWNLVR-GRVAFVLN-LKNKATLVSWSPQGD 181 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCce-------eeeehhhc-Cccceeec-cCCcceeeEEcCCCC
Confidence 99999999999999999999999999 8888888886655 99999987 43333322 1222345999999 5
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 564 (597)
+|+.++.+ .|-||.+.+......+... ..+.++.|. ++.++++|+.|+.|.+||.....+...+. +
T Consensus 182 ~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-----------A 247 (362)
T KOG0294|consen 182 HFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-----------A 247 (362)
T ss_pred EEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-----------c
Confidence 57777665 6899999887766665532 334555553 57789999999999999998877766654 4
Q ss_pred CCcceEEEEE--ccCCCeEEEecCcccEEEEEec
Q 042883 565 GSYFISAVCW--KSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 565 h~~~i~~v~~--~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|...|.++.+ .|++.+|++++.||.|+|||++
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred chhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 7999999984 5788999999999999999986
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=215.34 Aligned_cols=214 Identities=15% Similarity=0.234 Sum_probs=168.3
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.||...|.++++.|.|.+|++|+.|-+|++||+............ ........|.++.|++ .++.|++.+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~--l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ--LQPCETHQINSLQYSV-TGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc--cCcccccccceeeecC-CCCeEEEEecCcc
Confidence 345689999999999999999999999999999999877433332221 2223345799999999 5677777777789
Q ss_pred EEEEeCCCCeeeeE------------EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc
Q 042883 403 VTIWDVTTSQSVME------------YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG 470 (597)
Q Consensus 403 i~iwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~ 470 (597)
.+|+|-.....+.. -++|...+++..|+|.....|+|++.||+ ++|||+.+....+..++.
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt-------lRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT-------LRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc-------EEEEecCCchhheeEEee
Confidence 99999544333222 24789999999999988899999997666 999999986666666642
Q ss_pred -----CCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc--ce-eeeeCCCC--ceeEEEEeecCCEEEEEeCCCcEEE
Q 042883 471 -----HKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL--PL-HTFRGHTN--EKNFVGLTVNNEYIACGSETNEVFV 539 (597)
Q Consensus 471 -----~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~-~~~~~~~~--~v~~v~~s~~g~~l~~~~~d~~i~i 539 (597)
..-+++..+|+++ ..|++|..||.|.+||.++.. +. ..-..|.. .|++|+||+||++|++-|.|+.+++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 3347899999999 778999999999999986532 22 23346766 8999999999999999999999999
Q ss_pred EEccCCc
Q 042883 540 YHKAISK 546 (597)
Q Consensus 540 wd~~~~~ 546 (597)
||++..+
T Consensus 391 WDLrq~k 397 (641)
T KOG0772|consen 391 WDLRQFK 397 (641)
T ss_pred eeccccc
Confidence 9998643
No 72
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.5e-27 Score=198.72 Aligned_cols=250 Identities=17% Similarity=0.232 Sum_probs=196.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEe-cCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWN-KYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~~l~s~~~dg~i~i 405 (597)
.|.+.|.++..+-.|.+|||++.|++|+||.+..... ......+.+|.++|+.++|. |.-|++|+++++||.|.|
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 5888888888888999999999999999999987611 12334566899999999995 445899999999999999
Q ss_pred EeCCCCee--eeEEeeccceeEEEEeCCCCC-ceEEeecCCCcccCCCCeEEEEEccCCC-c-ceeeeccCCCceEEEEe
Q 042883 406 WDVTTSQS--VMEYEEHEKRAWSVDFSCTEP-SMLVSGSDDCKVGSADHHIHYYDLRNIS-Q-PLHVFNGHKKAVSYVKF 480 (597)
Q Consensus 406 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~~~~~d~~i~i~d~~~~~-~-~~~~~~~~~~~v~~v~~ 480 (597)
|.-..++. ...+..|...|++++|.|.+- -.|++++.| |.|.|++.+..+ . ..+....|.-.|++++|
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD-------G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD-------GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC-------CcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 99887743 344567999999999999654 456666655 458999988642 2 23445679999999999
Q ss_pred cCC---C------------eEEEeeCCCcEEEEEcCCC--cceeeeeCCCCceeEEEEeecC----CEEEEEeCCCcEEE
Q 042883 481 LSN---N------------ELASASTDSSLRLWDVKEN--LPLHTFRGHTNEKNFVGLTVNN----EYIACGSETNEVFV 539 (597)
Q Consensus 481 ~~~---~------------~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~v~~s~~g----~~l~~~~~d~~i~i 539 (597)
.|. + +|++|+.|+.|+||+..++ ..-.++.+|...|..++|.|.- .+|++++.||+|.|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 886 2 4999999999999998874 3445688999999999999973 48999999999999
Q ss_pred EEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 540 YHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 540 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
|.............-.. -...++.+.||..|..|+.++.|+.|.+|.-
T Consensus 238 wt~~~e~e~wk~tll~~--------f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEE--------FPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EEecCccCccccccccc--------CCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 98763211111110000 1567999999999999999999999999963
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=186.87 Aligned_cols=251 Identities=19% Similarity=0.316 Sum_probs=201.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCc----cCCCC----ceEecCCCceeEEEEecCCCCEEEEee
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPR----DVHYP----MVEMPTRSKLSCLSWNKYTKNLIASSD 398 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~----~~~~~----~~~~~~~~~i~~v~~~~~~~~~l~s~~ 398 (597)
.....|.+++|+|.|.+.++|+...+++|..+........ ....+ .....|.+.|+|.+|+| .+.+|++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecC
Confidence 3556899999999999999999999999987654311100 01111 12335789999999999 899999999
Q ss_pred CCCcEEEEeCCCCe-----eeeEEeeccceeEEEEeCC---CCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc
Q 042883 399 YDGIVTIWDVTTSQ-----SVMEYEEHEKRAWSVDFSC---TEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG 470 (597)
Q Consensus 399 ~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~ 470 (597)
+|..|++.-..... .-..+.-|.+.|.+++|.. .++.++++++. .|-.|++-|... ++....+.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga------gdc~iy~tdc~~-g~~~~a~sg 181 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA------GDCKIYITDCGR-GQGFHALSG 181 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC------CcceEEEeecCC-CCcceeecC
Confidence 99999997664332 2245667899999999964 24567777763 455689989887 888999999
Q ss_pred CCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeC--C-----CCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 471 HKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG--H-----TNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 471 ~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~-----~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
|.+.|.++---..-.+++|+.|.+|++||++-...+.++.. | .+.|..++..|.|++|++|-.|....+||++
T Consensus 182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 99999988533446799999999999999998888777642 2 3578899999999999999999999999999
Q ss_pred CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 544 ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.++++..+. .|...|.+|.|+|...|+++++.|..|++-|+.
T Consensus 262 g~r~iq~f~-----------phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 262 GGRMIQRFH-----------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCceeeeeC-----------CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 999998875 368999999999999999999999999998874
No 74
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=9.5e-26 Score=226.62 Aligned_cols=235 Identities=16% Similarity=0.256 Sum_probs=175.0
Q ss_pred cccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccC-CCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 324 DLFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDV-HYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
.+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.......... .......+|...|.+++|+|++..++++++.|+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 34579999999999996 7899999999999999997642111100 111234568899999999995555678999999
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE---
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV--- 478 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v--- 478 (597)
.|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|+ .|+|||+++ +..+..+.+|.+.+...
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~-------~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGK-------HMHIIDPRK-QEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCC-------EEEEEECCC-CcEEEEEecccCCceeEEEE
Confidence 99999999988777775 567899999999 888999888554 499999998 67778888998765433
Q ss_pred --EecCC-CeEEEeeCCC----cEEEEEcCC-CcceeeeeCC--CCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccc
Q 042883 479 --KFLSN-NELASASTDS----SLRLWDVKE-NLPLHTFRGH--TNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 479 --~~~~~-~~l~s~~~d~----~v~iwd~~~-~~~~~~~~~~--~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 548 (597)
.|+++ ++|++++.|+ .|+|||++. ++++..+..+ .+.+......++|.++++|+.|+.|++|++..+...
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~ 298 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIR 298 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEE
Confidence 34467 7888888774 799999995 5666665432 233333333445889999999999999999776422
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCC
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDS 578 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 578 (597)
....+ .+..++.+++|.|..
T Consensus 299 ~l~~~----------~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 299 KVNEY----------KSCSPFRSFGFLPKQ 318 (568)
T ss_pred eeccc----------ccCCCccceEEcccc
Confidence 21111 236778889999864
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=193.65 Aligned_cols=199 Identities=20% Similarity=0.303 Sum_probs=179.5
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCe
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHH 452 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~ 452 (597)
....+.++|.++.|+- ++++.++++.|.+|++|+...+.++.++.+|...|.+++.+. ++..|++|+.|+.
T Consensus 12 ~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~------- 82 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKA------- 82 (307)
T ss_pred eecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCce-------
Confidence 3446789999999998 899999999999999999999999999999999999999997 8888999886554
Q ss_pred EEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC--CcceeeeeCCCCceeEEEEeecCCEEE
Q 042883 453 IHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE--NLPLHTFRGHTNEKNFVGLTVNNEYIA 529 (597)
Q Consensus 453 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~v~~s~~g~~l~ 529 (597)
+.+||+.+ ++.++.+.+|.+.|+.+.|+.+ ..+++|+.|.++++||-++ .++++.+......|.++.. .+..|+
T Consensus 83 v~vwDV~T-Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIv 159 (307)
T KOG0316|consen 83 VQVWDVNT-GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIV 159 (307)
T ss_pred EEEEEccc-CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEE
Confidence 99999998 8999999999999999999998 8899999999999999886 5688888877888888876 577899
Q ss_pred EEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 530 CGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|+.||+++.||++.|....-+. ..+|+++.|+++++..++++-|+++++.|-+
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~-------------g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYF-------------GHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred eeccCCcEEEEEeecceeehhhc-------------CCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 99999999999999998776554 6789999999999999999999999998854
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=212.17 Aligned_cols=228 Identities=18% Similarity=0.318 Sum_probs=195.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+|...|.+++.++||++|++|+.|..|.||+..+. .......+|.+.|.+++|-. +.+.+++++.|++|++|
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~-------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL-------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVW 271 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCccc-------chhhcccccccceeeeeeec-CccceeeeecCCceEEE
Confidence 79999999999999999999999999999999987 33334578999999999997 77889999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeE
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNEL 486 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l 486 (597)
++.....+.++.+|.+.|.+|.... ....+.+|+.|++ +++|++. .....++.+|.+.+-+++|-.+..|
T Consensus 272 ~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT-------~rlwKi~--eesqlifrg~~~sidcv~~In~~Hf 341 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRT-------VRLWKIP--EESQLIFRGGEGSIDCVAFINDEHF 341 (479)
T ss_pred ehhHhHHHHHHhCCccceeeechhc-ccceEEeccccce-------eEEEecc--ccceeeeeCCCCCeeeEEEecccce
Confidence 9999889999999999999999885 5566666666555 9999995 4566678889999999999999999
Q ss_pred EEeeCCCcEEEEEcCCCcceeeee-CC-----------CCceeEEEEeecCCEEEEEeCCCcEEEEEccCC----ccccc
Q 042883 487 ASASTDSSLRLWDVKENLPLHTFR-GH-----------TNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS----KPAAS 550 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~~~~~~~-~~-----------~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~----~~~~~ 550 (597)
++||.+|.|.+|++-+.+++++.. .| ..+|++++..|...++++|+.+|.|++|-+..+ .++..
T Consensus 342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee
Confidence 999999999999999999888764 11 227899999999999999999999999999887 33333
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
+.+ .+.|++++|+++|++|++|
T Consensus 422 ls~------------~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 422 LSL------------VGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccc------------ccEEEEEEEccCCCEEEEe
Confidence 333 7789999999999977665
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=230.53 Aligned_cols=234 Identities=18% Similarity=0.305 Sum_probs=204.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCce-EecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV-EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
++...+.+..|+ ..++++++.+++|++|+...+ ..... ..+|.+.|+++++.. .++++++|+.|.+++|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~-------~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG-------YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERV 275 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccc-------eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEe
Confidence 356678888888 568999999999999999877 22223 568999999999987 7899999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCe
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE 485 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 485 (597)
||..+|.+...+.+|.+.|.++...+ ..+++|+. |.+|++|++.+ +..+..+.+|.++|.++..+ .++
T Consensus 276 Wd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~-------D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~-~~~ 343 (537)
T KOG0274|consen 276 WDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSR-------DNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD-EPL 343 (537)
T ss_pred EecCCCcEEEEecCCCceEEEEEccC---ceEeeccC-------CceEEEEeccC-cceEEEeccccccEEEEEec-CCE
Confidence 99999999999999999999999854 77888775 45599999997 88899999999999999987 789
Q ss_pred EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC-ccccccccCCCCCCCcCcC
Q 042883 486 LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS-KPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 564 (597)
+++|+.|++|++||+.++++++++.+|...|+++.+.+. .++++|+.|+.|++||+.+. +.+.++. +
T Consensus 344 lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-----------~ 411 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-----------G 411 (537)
T ss_pred EEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-----------C
Confidence 999999999999999999999999999999999987554 89999999999999999999 7777765 3
Q ss_pred CCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 565 GSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 565 h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|..-+..+.+ .+++|++++.||+|++||..
T Consensus 412 h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 412 HTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred Cccccccccc--ccceeEeccccccEEEeecc
Confidence 5666766655 57889999999999999975
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.8e-26 Score=232.20 Aligned_cols=251 Identities=16% Similarity=0.221 Sum_probs=207.1
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCcc-----------CCccCCCCceEecCCCceeEEEEecCCCCEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVN-----------EPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI 394 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l 394 (597)
..|.+.|+|+.|+|||++||+|++|+.|.||+...... ............+|...|..++|+| ++.++
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~l 144 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLL 144 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEE
Confidence 46999999999999999999999999999999884100 0111223345667999999999999 89999
Q ss_pred EEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC---
Q 042883 395 ASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH--- 471 (597)
Q Consensus 395 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~--- 471 (597)
++++.|++|.|||..+...+..+.+|.+.|-.+.|.| -|.+|++-++|++ |+||++.. -...+.+.++
T Consensus 145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrt-------ikvwrt~d-w~i~k~It~pf~~ 215 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRT-------LKVWRTSD-WGIEKSITKPFEE 215 (942)
T ss_pred EEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCce-------EEEEEccc-ceeeEeeccchhh
Confidence 9999999999999999999999999999999999999 9999999997666 99999765 3344444332
Q ss_pred ---CCceEEEEecCC-CeEEEe----eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec------C-------C----
Q 042883 472 ---KKAVSYVKFLSN-NELASA----STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN------N-------E---- 526 (597)
Q Consensus 472 ---~~~v~~v~~~~~-~~l~s~----~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~------g-------~---- 526 (597)
...+..+.|+|| .+|++. +...++.|.+-.+++.-..+.||..++.++.|+|. + .
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 245788999999 555553 23456999998888888999999999999999982 1 1
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 527 YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+|+|+.|+.|.||.....+|+.....-. ...|.+++|+|||..|++++.||+|.++.++
T Consensus 296 i~AvgSqDrSlSVW~T~~~RPl~vi~~lf----------~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALPRPLFVIHNLF----------NKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred EEEEecCCccEEEEecCCCCchhhhhhhh----------cCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 57889999999999998888876554322 6789999999999999999999999998875
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.5e-25 Score=184.41 Aligned_cols=250 Identities=18% Similarity=0.206 Sum_probs=199.8
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC---CCCEEEEee-CCC
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY---TKNLIASSD-YDG 401 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~---~~~~l~s~~-~dg 401 (597)
.+|.+.|+|.+|+|+|.+|++|+.|.+|++..++........ ......-|.+.|..++|..+ ++.+|++++ .|.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 479999999999999999999999999999887654222211 12334457889999999642 345677654 467
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-------CCCc
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-------HKKA 474 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~ 474 (597)
.|++-|..+|+....+.+|.+-|.++- +. ++.+|++|+.|.+ |++||++- ...+.++.. ..+.
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdkt-------irfwdlrv-~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKT-------IRFWDLRV-NSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCce-------EEEEeeec-cceeeeccCcccCCCcccce
Confidence 788888899999999999999998863 22 6789999986555 99999997 455555431 2367
Q ss_pred eEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC--cccccc
Q 042883 475 VSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS--KPAASH 551 (597)
Q Consensus 475 v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~--~~~~~~ 551 (597)
|.++++.|. ..|++|..|....+||++.++.++.+..|...|.++.|+|...|+++++.|..|++-|+... ..+..+
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence 999999999 66888999999999999999999999999999999999999999999999999999998642 111122
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..+ .|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 314 vv~---------ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 VVA---------EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEE---------eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 211 257788889999999889999999999999875
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=201.15 Aligned_cols=266 Identities=20% Similarity=0.327 Sum_probs=216.8
Q ss_pred ceeeeeeccccc----cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecc------cCcc-----------------C--
Q 042883 314 LRVIAELRHGDL----FHAANIISSIEFDRDDELFASAGVSRRIKIFEFS------SVVN-----------------E-- 364 (597)
Q Consensus 314 ~~~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~------~~~~-----------------~-- 364 (597)
...++.++.+.. .||.+.|++|.|++.+.++++++.|++.+||... .... .
T Consensus 171 TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~ 250 (481)
T KOG0300|consen 171 TARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT 250 (481)
T ss_pred ceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence 334666666544 3799999999999999999999999999999832 1100 0
Q ss_pred ----Ccc---CCC-CceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCce
Q 042883 365 ----PRD---VHY-PMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSM 436 (597)
Q Consensus 365 ----~~~---~~~-~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 436 (597)
..+ ... .....+|.+.|.+..|.. ++..++++++|.+..+||++++..+..+.+|....+.+.-+| ...+
T Consensus 251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL 328 (481)
T KOG0300|consen 251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL 328 (481)
T ss_pred ccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence 000 001 123346888999999998 899999999999999999999999999999999999999999 8899
Q ss_pred EEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCc
Q 042883 437 LVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE-NLPLHTFRGHTNE 515 (597)
Q Consensus 437 l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~ 515 (597)
+++++.|.+ .++||++..-..+..|.||...|+++.|..+..+++|+.|.+|+|||+++ ..++.++.. .++
T Consensus 329 VvTsSrDtT-------FRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~ 400 (481)
T KOG0300|consen 329 VVTSSRDTT-------FRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSP 400 (481)
T ss_pred EEEeccCce-------eEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCc
Confidence 999987665 89999997677889999999999999999999999999999999999998 457777764 677
Q ss_pred eeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC--eEEEecCcccEEEE
Q 042883 516 KNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP--TMLTANRKGAIKVL 593 (597)
Q Consensus 516 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~--~l~s~~~dg~v~iw 593 (597)
++.++.+..+.+|+.--++..|++||+...+. ..++. ...-+|...|++++|..+.. -|+++|.|..+.=|
T Consensus 401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPr------tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARLPR------TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred cceeEeecCCceEEeccCCceEEEEecCCCcc-ccCCc------ccccccceeeeeeeccccCcccccccccccceeeee
Confidence 89999999999999998899999999865443 22221 12235788999999986543 48999999999999
Q ss_pred Eec
Q 042883 594 VLA 596 (597)
Q Consensus 594 d~~ 596 (597)
.+.
T Consensus 474 ~in 476 (481)
T KOG0300|consen 474 KIN 476 (481)
T ss_pred Eec
Confidence 985
No 81
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.5e-27 Score=219.96 Aligned_cols=215 Identities=17% Similarity=0.291 Sum_probs=181.2
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC-CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCC
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT-SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~ 451 (597)
...+|...|+++.|.|-.+.+|++++.|+.|+||++.. +.+++++.+|..+|.++.|++ .+..|+++|.|+.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~------ 281 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF------ 281 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee------
Confidence 44578899999999997789999999999999999976 889999999999999999998 8899999986554
Q ss_pred eEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEE
Q 042883 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIA 529 (597)
Q Consensus 452 ~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 529 (597)
|++||+.+ ++.+..+. ....++++.|+|+ +.|++|+.|+.|+.||+|+++.++.+..|-+.|..+.|-++|+.++
T Consensus 282 -lKlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 282 -LKLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred -eeeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence 99999998 77777775 4567899999999 7899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCccccccccCCC------C-------------------------------CCCcCcCCCcceEEE
Q 042883 530 CGSETNEVFVYHKAISKPAASHRFGSD------A-------------------------------DHVDDDMGSYFISAV 572 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~~~~~~~~~~------~-------------------------------~~~~~~~h~~~i~~v 572 (597)
+++.|+.++||+.+.+-++........ . ....++.-.+.-..+
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 999999999999877654433222110 0 000111124556778
Q ss_pred EEccCCCeEEEecCcccEEEEEecC
Q 042883 573 CWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 573 ~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.|||||.+|++|+.||.+.+||..|
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechh
Confidence 9999999999999999999999754
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.8e-26 Score=220.01 Aligned_cols=249 Identities=15% Similarity=0.275 Sum_probs=206.1
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|...|+++.|+..|.+|++|+.|+.|.+||+-.. .......+|...|+..-|.. +.+++++.+.|+.|+
T Consensus 103 fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E-------~Gl~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 103 FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE-------EGLFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIK 174 (888)
T ss_pred ecccccceEEEEEcccCceEeecCCCccEEEEEeccc-------eeeEEeecchHHHhHHhccC-CCeEEEEeccCceEE
Confidence 4589999999999999999999999999999999765 44556678899999998886 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc--------------------------------------
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-------------------------------------- 446 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-------------------------------------- 446 (597)
+||+.+..+..+.-.|.+.|+++++.+ +.+++++.|+.+
T Consensus 175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred EEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 999999999999999999999999975 666666666554
Q ss_pred --------------------------------------------------------------------------------
Q 042883 447 -------------------------------------------------------------------------------- 446 (597)
Q Consensus 447 -------------------------------------------------------------------------------- 446 (597)
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 042883 447 -------------------------------------------------------------------------------- 446 (597)
Q Consensus 447 -------------------------------------------------------------------------------- 446 (597)
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec
Confidence
Q ss_pred ------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC-----
Q 042883 447 ------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE----- 502 (597)
Q Consensus 447 ------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~----- 502 (597)
|..+|.+.+||+.+ ...+.++.+|.+.|++++.+|+ ..+++||.|.+|++||..-
T Consensus 412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 412 CGYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred cccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 44444444444443 3345556789999999999999 6799999999999999742
Q ss_pred Ccc--eeeee-----CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc
Q 042883 503 NLP--LHTFR-----GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 503 ~~~--~~~~~-----~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 575 (597)
+.. +..+. .-...|.++.+||||++|+++=-|++|+||-+.+-+....+. +|.-||.++..+
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-----------GHkLPV~smDIS 559 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-----------GHKLPVLSMDIS 559 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-----------ccccceeEEecc
Confidence 111 11111 234678999999999999999999999999999888776664 579999999999
Q ss_pred cCCCeEEEecCcccEEEEEec
Q 042883 576 SDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 576 ~~~~~l~s~~~dg~v~iwd~~ 596 (597)
||+..++|||.|.+|+||-++
T Consensus 560 ~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred CCcCeEEeccCCCceEEeccc
Confidence 999999999999999999874
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=202.91 Aligned_cols=245 Identities=18% Similarity=0.310 Sum_probs=206.5
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.||...|+.+.|+|+...+++++.|..|+||..... ..+.....|..+|+.+..+| .+.+|++++.||...
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------SEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWA 328 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------cCccccccccccceeeeecc-CCcEEEEecCCceEE
Confidence 3489999999999999999999999999999998776 45666778999999999999 899999999999999
Q ss_pred EEeCCCCeeeeEEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 405 IWDVTTSQSVMEYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 405 iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
+.|++++..+..... ..-.+++.+|+| ||.+|++|..|+. |+|||+.+ ...+..|.+|.++|..++|+.
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~-------vkiwdlks-~~~~a~Fpght~~vk~i~FsE 399 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGV-------VKIWDLKS-QTNVAKFPGHTGPVKAISFSE 399 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCce-------EEEEEcCC-ccccccCCCCCCceeEEEecc
Confidence 999999987766644 234589999999 9999999986554 99999998 668889999999999999999
Q ss_pred CCe-EEEeeCCCcEEEEEcCCCcceeeeeCC-CCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 483 NNE-LASASTDSSLRLWDVKENLPLHTFRGH-TNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 483 ~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
+|+ ++++..|+.|++||+|..+...++... ..++.++.|++.|.+|+.+|.|=.|++++..+........+
T Consensus 400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~------- 472 (506)
T KOG0289|consen 400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL------- 472 (506)
T ss_pred CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-------
Confidence 965 888999999999999998877777633 23689999999999999998887777777544333222222
Q ss_pred cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
..|.+..+.+.|....++++++|.|..++++.+
T Consensus 473 --~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 473 --ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred --hhcccccceeeecccceEEeeccchhheEEeec
Confidence 125678899999999999999999999999865
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.4e-26 Score=211.01 Aligned_cols=213 Identities=25% Similarity=0.394 Sum_probs=183.9
Q ss_pred cccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+.+|...=++++|++. .-.|++++.|++|++||+.................+|...|..++|++....+|++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 56788888889999994 45789999999999999987644333344445667899999999999988999999999999
Q ss_pred EEEEeCC--CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEe
Q 042883 403 VTIWDVT--TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKF 480 (597)
Q Consensus 403 i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~ 480 (597)
+.|||++ +.+......+|.+.|++++|+|.++.+|||||.|++ |.+||+|+..+++.++.+|...|..|.|
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-------V~LwDlRnL~~~lh~~e~H~dev~~V~W 324 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-------VALWDLRNLNKPLHTFEGHEDEVFQVEW 324 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-------EEEeechhcccCceeccCCCcceEEEEe
Confidence 9999999 556667778999999999999999999999996655 9999999988999999999999999999
Q ss_pred cCC--CeEEEeeCCCcEEEEEcCC--------------CcceeeeeCCCCceeEEEEeecCCE-EEEEeCCCcEEEEEcc
Q 042883 481 LSN--NELASASTDSSLRLWDVKE--------------NLPLHTFRGHTNEKNFVGLTVNNEY-IACGSETNEVFVYHKA 543 (597)
Q Consensus 481 ~~~--~~l~s~~~d~~v~iwd~~~--------------~~~~~~~~~~~~~v~~v~~s~~g~~-l~~~~~d~~i~iwd~~ 543 (597)
+|. ..|++++.|+.+.|||+.. .++++...||...|..++|+|+..+ |++.+.|+.+.||...
T Consensus 325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999 7799999999999999864 1345677799999999999999765 6678899999999864
No 85
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=190.91 Aligned_cols=206 Identities=18% Similarity=0.297 Sum_probs=171.0
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC---eeeeEE-eeccceeEEEEeCCCCCceEEeecCCCcccC
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS---QSVMEY-EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~ 448 (597)
...+|.+.+..++|+|..|.+|++|+.|..|+||+...+ .+...+ .+|...|.+++|+| .+++|++++.|.+
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t--- 84 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT--- 84 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce---
Confidence 344677899999999933789999999999999998743 233233 36899999999999 8889999996655
Q ss_pred CCCeEEEEEccC-CCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCC---cceeeeeCCCCceeEEEEee
Q 042883 449 ADHHIHYYDLRN-ISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKEN---LPLHTFRGHTNEKNFVGLTV 523 (597)
Q Consensus 449 ~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~v~~s~ 523 (597)
+.||.-.. .-..+.++.||...|.+++|+++ ++|++++.|..|-||.+..+ .++..+..|...|..+.|+|
T Consensus 85 ----~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 85 ----VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred ----EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 89997553 13568889999999999999999 89999999999999998753 46677889999999999999
Q ss_pred cCCEEEEEeCCCcEEEEEcc-CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 524 NNEYIACGSETNEVFVYHKA-ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 524 ~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
...+|++++.|++|++|+-. ...-.....+ .+|...|++++|++.|..|++++.|++|+||..
T Consensus 161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl---------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTL---------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred CcceeEEeccCCeEEEEeecCCCCeeEEEEe---------cCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 99999999999999999876 3322222222 246779999999999999999999999999974
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=5.8e-26 Score=218.32 Aligned_cols=234 Identities=21% Similarity=0.352 Sum_probs=199.5
Q ss_pred ccCCCCcEEE-EEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 325 LFHAANIISS-IEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 325 ~~~~~~~v~~-i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+|.+.|.. ++|.+ ++..+++|+.|++|.+|.+... .......+|...|.+++... ++. +++|++|.+
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~-------~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA-------EPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDST 123 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCC-------CchhhhhccccceeeeecCC-cCc-eEecccccc
Confidence 3457777777 88876 5557999999999999999877 44556678999999999775 344 999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
+++|-. +++...+.+|+..|++++..| .+ .++||+.|.+ |++|.- +..+.+|.+|.+-|..+++-+
T Consensus 124 akvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKt-------IklWk~---~~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 124 AKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKT-------IKLWKG---GTLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred eEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcce-------eeeccC---CchhhhhccchhheeeeEEec
Confidence 999964 567777999999999999998 54 8889886555 999964 678999999999999999999
Q ss_pred CCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 483 NNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 483 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
++.|++++.||.|++||+ +|..+..+.+|.+.+++++...++..|+++|.|++++||+.. .....+..+
T Consensus 190 ~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-------- 258 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-------- 258 (745)
T ss_pred CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------
Confidence 989999999999999998 689999999999999999988888999999999999999976 455555443
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...|+++.+-++|+ |++|++||.|+||..+
T Consensus 259 ---ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 259 ---TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ---ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 55799999888876 7788899999999875
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=193.13 Aligned_cols=251 Identities=16% Similarity=0.264 Sum_probs=191.7
Q ss_pred CCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
-.+.|.+++||| ...+++.|+.||+|++|++... . ...+.....|.++|.+++|+. +++.+++|+.|+.+++|
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g----~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-G----QLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLW 99 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecC-C----cccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEE
Confidence 467899999999 4556668999999999999874 1 122334446789999999997 78999999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCc--eEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPS--MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN 484 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~ 484 (597)
|+.++ .+..+..|.++|..+.|-+ ... .|+|||. |.+|++||+|. ..++.++. -...++++..- ..
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSW-------DKTlKfWD~R~-~~pv~t~~-LPeRvYa~Dv~-~p 167 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSW-------DKTLKFWDTRS-SNPVATLQ-LPERVYAADVL-YP 167 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEec-CCCcceeEeccc-------ccceeecccCC-CCeeeeee-ccceeeehhcc-Cc
Confidence 99998 4556778999999999987 544 7899885 55599999997 67777765 34556666432 15
Q ss_pred eEEEeeCCCcEEEEEcCCCcceee-ee-CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHT-FR-GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~-~~-~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
.++++..++.|.+|+++++..... .. .-.-.+.+|+...|....+.|+-.|++.|..+..+.+...+.+.........
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 678888899999999987532221 11 1233578999999988889999999999999988766555555432211111
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...-..|++|+|+|.-..|+|+|.||++.+||-+
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecch
Confidence 1125689999999999999999999999999964
No 88
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-26 Score=225.87 Aligned_cols=249 Identities=22% Similarity=0.405 Sum_probs=197.3
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
.....+|+.+++...++.++ ...+.||.+......................+..|+|+....++|++++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 34566778888877777776 45788888765421111000000011112356678898777899999999999999999
Q ss_pred CC---CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--
Q 042883 409 TT---SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 409 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-- 483 (597)
.. .+.+..|..|...++.+.|++..+++|++||.||. |++||++. .+...++.+....|..|+|+|.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~-------vK~~DlR~-~~S~~t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT-------VKCWDLRS-KKSKSTFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCce-------EEEEeeec-ccccccccccchhhhceeeccCCC
Confidence 76 45667788999999999999999999999996555 99999998 6777778888899999999998
Q ss_pred CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 484 NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
++|+++...|.+++||+|. .++...+.+|.++|.++.|+|++.+||+||.|+.|+|||..+++.........
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT------- 262 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT------- 262 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-------
Confidence 7899999999999999997 45678889999999999999999999999999999999998765544333322
Q ss_pred cCCCcceEEEEEccCCCe-EEEec--CcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPT-MLTAN--RKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~-l~s~~--~dg~v~iwd~~ 596 (597)
..+|..|.|-|..++ |++++ .|-.|+|||+.
T Consensus 263 ---iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 263 ---IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred ---cceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 778999999998776 55543 58899999985
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6e-26 Score=216.56 Aligned_cols=250 Identities=16% Similarity=0.246 Sum_probs=205.0
Q ss_pred CCCCcEE---EEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 327 HAANIIS---SIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 327 ~~~~~v~---~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.|...|. .+..+. ++++|+|||.||.|++|++.......... .......|...|..++... +++.|++++.|-+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCG-NGKTLISASSDTT 96 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhc-CCCceEEecCCce
Confidence 4455555 555554 66789999999999999987652222111 1223345788899888876 6789999999999
Q ss_pred EEEEeCCCC--eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc---------ceeeec-c
Q 042883 403 VTIWDVTTS--QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ---------PLHVFN-G 470 (597)
Q Consensus 403 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~---------~~~~~~-~ 470 (597)
|++|+...+ -++.++..|.+.|.++++-..+..++|+||-|+. |.+||+.++.. ....+. +
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~-------IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK-------IFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCcc-------EEEEEccCcchhhhhhccccccccCCCC
Confidence 999999877 5678888999999999994448889999986555 99999986311 222233 7
Q ss_pred CCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 471 HKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 471 ~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
+..+|++++.++. ..|++|+..+.+++||.++++.+..+.||...|..+..++||..+++++.||+|++||+...+.+.
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 8889999999988 568889999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++.. |...|+++..+|+-..+++|+.||.|..=|++
T Consensus 250 T~~v-----------H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 250 TYIV-----------HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eEEe-----------ccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 8764 57779999999999999999999999877764
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2.2e-26 Score=194.43 Aligned_cols=242 Identities=14% Similarity=0.212 Sum_probs=211.8
Q ss_pred ccCCCCcEEEEEEcC---CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 325 LFHAANIISSIEFDR---DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~---~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
..+|..+|-.++|+| +|-+|++++.||.--+-+-+++ ...-...+|.+.|++...+. +...-++++.|-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-------dwigtfeghkgavw~~~l~~-na~~aasaaadf 81 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-------DWIGTFEGHKGAVWSATLNK-NATRAASAAADF 81 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-------CcEEeeeccCcceeeeecCc-hhhhhhhhcccc
Confidence 358999999999997 8889999999998777666665 33345568999999999887 567788899999
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEec
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 481 (597)
+-+|||.-+|..+..| .|...|..++|+. +.++|++|+.+.. ++|||++.+..+...+.+|.+.|..+-|.
T Consensus 82 takvw~a~tgdelhsf-~hkhivk~~af~~-ds~~lltgg~ekl-------lrvfdln~p~App~E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSF-EHKHIVKAVAFSQ-DSNYLLTGGQEKL-------LRVFDLNRPKAPPKEISGHTGGIRTVLWC 152 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhhheeeeEEecc-cchhhhccchHHH-------hhhhhccCCCCCchhhcCCCCcceeEEEe
Confidence 9999999999998888 5788999999998 8899999997665 89999999888999999999999999998
Q ss_pred CC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 482 SN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
.. ..|++++.|++|++||.++++.++++. ...+|+++-++++|++|.++ ..+.|.+||..+-.++..+..
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~------- 223 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM------- 223 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-------
Confidence 77 889999999999999999999999987 46778999999999988766 567899999999998888876
Q ss_pred cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
...|.+...+|+...+++|+.|..++.||..+
T Consensus 224 -----P~nV~SASL~P~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 224 -----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred -----ccccccccccCCCceEEecCcceEEEEEeccC
Confidence 45689999999999999999999999999864
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-24 Score=190.67 Aligned_cols=243 Identities=17% Similarity=0.297 Sum_probs=210.1
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.||.+.|+.++-......+.+++.|.+.+||.+.++ .......+|.+.|++|+|++ .+.++++++.|++.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-------~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-------ACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETA 214 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccc-------cceeeecccccceeeEEecc-ccceEEEccCCcch
Confidence 34589999999999887789999999999999999988 56677788999999999999 89999999999999
Q ss_pred EEEeC------CC-----C-----------------------------eeeeEEeeccceeEEEEeCCCCCceEEeecCC
Q 042883 404 TIWDV------TT-----S-----------------------------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD 443 (597)
Q Consensus 404 ~iwd~------~~-----~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 443 (597)
.||.. .. + .++..+.+|.+.|.+..|.. ++..+++++.|
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWD 293 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWD 293 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeecc
Confidence 99951 10 0 14566788999999999997 89999999855
Q ss_pred CcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCC-cceeeeeCCCCceeEEEE
Q 042883 444 CKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKEN-LPLHTFRGHTNEKNFVGL 521 (597)
Q Consensus 444 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~v~~ 521 (597)
. +..+||+.+ +.++..+.||....+-++-+|. ..+++.+.|.+.++||++.. ..+..|+||...|+++.|
T Consensus 294 R-------TAnlwDVEt-ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 294 R-------TANLWDVET-GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred c-------cceeeeecc-CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 4 489999998 8899999999999999999999 77889999999999999853 356778999999999999
Q ss_pred eecCCEEEEEeCCCcEEEEEccCC-ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 522 TVNNEYIACGSETNEVFVYHKAIS-KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 522 s~~g~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..+. .+++|++|.+|+|||+++. .++.++.. ..+++.++.+..++.|+.--.+..|++||++
T Consensus 366 ~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt------------dS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 366 NTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT------------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ecCC-ceeecCCCceEEEeeeccccCcceeeec------------CCccceeEeecCCceEEeccCCceEEEEecC
Confidence 8765 5789999999999999874 56677765 6789999999888899999999999999985
No 92
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-26 Score=223.19 Aligned_cols=238 Identities=18% Similarity=0.293 Sum_probs=193.2
Q ss_pred cEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 331 IISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 331 ~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
.+..|.|+. +.++|||++.+|.|.+||+.... ..........|...+++++|++...++|++|+.||.|++||++
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 445677775 56799999999999999998630 1122224446889999999999889999999999999999999
Q ss_pred CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEE
Q 042883 410 TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELAS 488 (597)
Q Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s 488 (597)
......++.+....|.++.|+|..++.|+++.+.|. +++||+|.+.++...+.+|.++|.++.|+|+ ++|+|
T Consensus 165 ~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-------lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 165 SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-------LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT 237 (839)
T ss_pred cccccccccccchhhhceeeccCCCceEEEecCCce-------EEEeeccCchhHHHHhhcccCceEEEeecCCCceeee
Confidence 999999998988999999999988899999886554 9999999988889999999999999999999 89999
Q ss_pred eeCCCcEEEEEcCCCcc--eeeeeCCCCceeEEEEeecCC-EEEEEe--CCCcEEEEEccCCc-cccccccCCCCCCCcC
Q 042883 489 ASTDSSLRLWDVKENLP--LHTFRGHTNEKNFVGLTVNNE-YIACGS--ETNEVFVYHKAISK-PAASHRFGSDADHVDD 562 (597)
Q Consensus 489 ~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~g~-~l~~~~--~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 562 (597)
||.|+.|+|||+.+++. +.++. ...+|..|.|-|... .|++++ .|-.|+|||++-.- |..++.
T Consensus 238 GGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~---------- 306 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL---------- 306 (839)
T ss_pred cCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee----------
Confidence 99999999999987554 34443 356789999999855 466654 47789999986432 222222
Q ss_pred cCCCcceEEEEEcc-CCCeEEEecCcccEE
Q 042883 563 DMGSYFISAVCWKS-DSPTMLTANRKGAIK 591 (597)
Q Consensus 563 ~~h~~~i~~v~~~~-~~~~l~s~~~dg~v~ 591 (597)
-|...++.++|.. |...|.+++.||+|.
T Consensus 307 -eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 307 -EHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred -ccCccccceeccCCCceeeEeecCccHHH
Confidence 3688999999965 456688999999874
No 93
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8e-25 Score=195.79 Aligned_cols=259 Identities=18% Similarity=0.295 Sum_probs=193.5
Q ss_pred cCCCCcEEEEEEcCC--CCEEEEeeCCCcEEEEecccCccCC---------ccCCCCceEecCCCceeEEEEecCCCCEE
Q 042883 326 FHAANIISSIEFDRD--DELFASAGVSRRIKIFEFSSVVNEP---------RDVHYPMVEMPTRSKLSCLSWNKYTKNLI 394 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~--~~~l~t~~~d~~v~iw~~~~~~~~~---------~~~~~~~~~~~~~~~i~~v~~~~~~~~~l 394 (597)
+.|.+.++-+.-++- ..+.++-+..|.|+||++....... ..........+|...-++++|+|-....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 456677777777664 4566777889999999986542111 11222233446778889999999666678
Q ss_pred EEeeCCCcEEEEeCCCCeee---eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC-Ccceeeecc
Q 042883 395 ASSDYDGIVTIWDVTTSQSV---MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI-SQPLHVFNG 470 (597)
Q Consensus 395 ~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-~~~~~~~~~ 470 (597)
++|..-+.|++|...+|... ..+.+|...|-++.|+|.....|++||- ||+|+|||+|.. .+.....+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~-------DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC-------DGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec-------CceEEEEEecCCCccceeEeec
Confidence 99988899999999887543 3456799999999999999999999995 555999999984 234444588
Q ss_pred CCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC---CcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCC
Q 042883 471 HKKAVSYVKFLSN-NELASASTDSSLRLWDVKE---NLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 471 ~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~ 545 (597)
|.+.|+.+.|+.. .+|++|+.||+++|||+|. ++++.+|+.|..+|++|.|+|. ...|+++|.|..|.|||+...
T Consensus 301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999999998 8899999999999999986 7789999999999999999996 567888999999999998653
Q ss_pred cccc--------c-cccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEE
Q 042883 546 KPAA--------S-HRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLV 594 (597)
Q Consensus 546 ~~~~--------~-~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd 594 (597)
.-.. . ...+..+... +.....|..|.|++.- .+|++.+.|| +.||-
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFV--HqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFV--HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CChhhhccccccchhcCCceeEEE--ecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 3210 0 0011101111 1236678899999854 4788888888 45553
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-24 Score=189.00 Aligned_cols=259 Identities=14% Similarity=0.225 Sum_probs=187.8
Q ss_pred cccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 322 HGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 322 ~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
...+.+|.+.|++++|+.||++|+|++.|++|+||++................ -+..+.|.|.|+-..++++.-...
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEECCCcceEEEEEccCC
Confidence 34456899999999999999999999999999999998752221111111111 235788999997677777777777
Q ss_pred cEEEEeCCC---Ceeee---------EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 402 IVTIWDVTT---SQSVM---------EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 402 ~i~iwd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
++++|.+.. |.... .-+.|...+-++-+.. ++.+|++++.|.. |.+|+++ ++.+..+.
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~-------i~lw~lk--Gq~L~~id 225 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTK-------ICLWDLK--GQLLQSID 225 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCc-------EEEEecC--Cceeeeec
Confidence 899998743 21111 1123566777777765 7889999986554 9999999 77888887
Q ss_pred cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcC---CC-----cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEE
Q 042883 470 GHKKAVSYVKFLSN-NELASASTDSSLRLWDVK---EN-----LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540 (597)
Q Consensus 470 ~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~---~~-----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 540 (597)
.....-+..+.+|+ .++++++..-.|++|.+- .| ..+..+.||...|...+|+++...+++.+.||.++||
T Consensus 226 tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 226 TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 77667778889999 567788888889999863 22 3567788999999999999999999999999999999
Q ss_pred EccC----CccccccccCCCCCCC--------------------------------------cCcCCCcceEEEEEccCC
Q 042883 541 HKAI----SKPAASHRFGSDADHV--------------------------------------DDDMGSYFISAVCWKSDS 578 (597)
Q Consensus 541 d~~~----~~~~~~~~~~~~~~~~--------------------------------------~~~~h~~~i~~v~~~~~~ 578 (597)
|+.- ++-...+..++.+.+. ....|...|.+++|+++|
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG 385 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence 9753 1111111111000000 001289999999999999
Q ss_pred CeEEEecCcccEEEEE
Q 042883 579 PTMLTANRKGAIKVLV 594 (597)
Q Consensus 579 ~~l~s~~~dg~v~iwd 594 (597)
++++++| |..++++.
T Consensus 386 ~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVIR 400 (420)
T ss_pred cEEeeec-ceeeeeec
Confidence 9999987 56677764
No 95
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=213.31 Aligned_cols=245 Identities=18% Similarity=0.240 Sum_probs=204.6
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
+.|...-+.|+|.|+|.+|++++.||.|++|+..... ..|.....+...|.+++.. ++.|++|+.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE------EEPETIDISGELVSSIACY---SNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc------cCCchhhccCceeEEEeec---ccceEEeeccceEEE
Confidence 4688889999999999999999999999999976541 1222222256778777765 459999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-C
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~ 484 (597)
|.+..+..-..+....-++.+++|+- +|.+++.||+|-. |++.++.. ......+.+|.++|.+|.|+|. +
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~-------vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTA-------VKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCcee-------EEEEeccc-cchheeecccCCceeeeeEcCCCC
Confidence 99988877666666778999999997 8899999987655 89999887 6678889999999999999999 8
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeCC--------CCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRGH--------TNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~--------~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
+|++.+.||.|+|||+.++....++.+- ...+..++|+|+|..+++.+.|+.|.+|+..++.....+...
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-- 229 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-- 229 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc--
Confidence 8999999999999999998877776531 334567899999888888889999999999988877766543
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.|...+..++|+|+|.|||+++.||.|.|||+++
T Consensus 230 -------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 -------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -------ccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 2355599999999999999999999999999873
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.1e-24 Score=220.65 Aligned_cols=249 Identities=18% Similarity=0.232 Sum_probs=200.3
Q ss_pred cCCCCcEEEEEEcCCCCEEEEee--CCCcEEEEecccCccCCc----c-CCCCceEecCCCceeEEEEecCCCCEEEEee
Q 042883 326 FHAANIISSIEFDRDDELFASAG--VSRRIKIFEFSSVVNEPR----D-VHYPMVEMPTRSKLSCLSWNKYTKNLIASSD 398 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~--~d~~v~iw~~~~~~~~~~----~-~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~ 398 (597)
.|+...|.+|+.+|+|..++||+ .||.+.||+...-..... . .........|.+.|+|+.|+| +|.+||+|+
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeecc
Confidence 45677899999999999999999 899999999765421111 1 112223446889999999999 899999999
Q ss_pred CCCcEEEEeCCC------------------CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC
Q 042883 399 YDGIVTIWDVTT------------------SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN 460 (597)
Q Consensus 399 ~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~ 460 (597)
.|+.|.||.... .+.+..+.+|...|.++.|+| ++.++++++.|++ |.|||.++
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~Dns-------Viiwn~~t 160 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNS-------VIIWNAKT 160 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccce-------EEEEcccc
Confidence 999999998762 135677889999999999999 9999999996554 99999999
Q ss_pred CCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCC------ceeEEEEeecCCEEEEEeC
Q 042883 461 ISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTN------EKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 461 ~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~------~v~~v~~s~~g~~l~~~~~ 533 (597)
...+..+.+|.+.|..+.|.|- .+|++-+.|++|+||++.+....+.+.++-. ....++|||||.+|++...
T Consensus 161 -F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 161 -FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred -ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 4899999999999999999999 7899999999999999888777776654432 4567999999999998632
Q ss_pred ----CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccC-----CC------------eEEEecCcccEEE
Q 042883 534 ----TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSD-----SP------------TMLTANRKGAIKV 592 (597)
Q Consensus 534 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-----~~------------~l~s~~~dg~v~i 592 (597)
-..+.|.+..+.+.-..+. +|.+++..++|+|. .. .+|+|+.|++|-|
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~Lv-----------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLV-----------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred ccCCcceeEEEecCCceeeeeee-----------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 3468888876555433332 57889999999981 11 4678999999999
Q ss_pred EEe
Q 042883 593 LVL 595 (597)
Q Consensus 593 wd~ 595 (597)
|..
T Consensus 309 W~T 311 (942)
T KOG0973|consen 309 WNT 311 (942)
T ss_pred Eec
Confidence 985
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.5e-24 Score=187.85 Aligned_cols=212 Identities=20% Similarity=0.385 Sum_probs=171.2
Q ss_pred CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccC----CccCC----CCceEecCCCceeEEEEecCCCCEEEEe
Q 042883 327 HAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNE----PRDVH----YPMVEMPTRSKLSCLSWNKYTKNLIASS 397 (597)
Q Consensus 327 ~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~----~~~~~----~~~~~~~~~~~i~~v~~~~~~~~~l~s~ 397 (597)
.|.+.|+++.+.+ .|+++++|+.||.|.+||+...... ....+ ......+|...|..+.|.|.+..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999998 6899999999999999999866211 00011 1122346788999999999989999999
Q ss_pred eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCC--ceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCce
Q 042883 398 DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEP--SMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV 475 (597)
Q Consensus 398 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 475 (597)
+.|.+++|||..+-+....|+ ..+.|++-+++|-.. .++++|.+|- .|++-|+.+ +....++.+|.+.|
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~-------~VrLCDi~S-Gs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDV-------QVRLCDIAS-GSFSHTLSGHRDGV 191 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCC-------cEEEEeccC-CcceeeeccccCce
Confidence 999999999999888777774 567899999988433 3555555443 499999998 88899999999999
Q ss_pred EEEEecCC-C-eEEEeeCCCcEEEEEcCCC-cceee--------------eeCCCCceeEEEEeecCCEEEEEeCCCcEE
Q 042883 476 SYVKFLSN-N-ELASASTDSSLRLWDVKEN-LPLHT--------------FRGHTNEKNFVGLTVNNEYIACGSETNEVF 538 (597)
Q Consensus 476 ~~v~~~~~-~-~l~s~~~d~~v~iwd~~~~-~~~~~--------------~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 538 (597)
.+|.|+|. . .|++|+.||.|++||++.. .+... -..|.+.+++++|+.+|.++++.+.|..++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 99999999 3 4889999999999999863 22222 235778899999999999999999999999
Q ss_pred EEEccCCcc
Q 042883 539 VYHKAISKP 547 (597)
Q Consensus 539 iwd~~~~~~ 547 (597)
+|+...|+.
T Consensus 272 ~wn~~~G~n 280 (397)
T KOG4283|consen 272 VWNMESGRN 280 (397)
T ss_pred EeecccCcc
Confidence 999887653
No 98
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=198.53 Aligned_cols=249 Identities=19% Similarity=0.288 Sum_probs=195.1
Q ss_pred cEEEEEEcC-------CCCEEEEeeCCCcEEEEecccCccCCc--------------cCCCCceEecCCCceeEEEEecC
Q 042883 331 IISSIEFDR-------DDELFASAGVSRRIKIFEFSSVVNEPR--------------DVHYPMVEMPTRSKLSCLSWNKY 389 (597)
Q Consensus 331 ~v~~i~~~~-------~~~~l~t~~~d~~v~iw~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~v~~~~~ 389 (597)
...|++|.. .|+++|.|+.|..|.|||++-...... .........+|...|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 446777753 367999999999999999875411000 00111122357788889999987
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 390 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
-.+.|++|+.|.+|++||+.++++..++..|...|.++.|+|..+.++++|+.|++ |.++|.|.....-..++
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~-------V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT-------VALKDCRDPSNSGKEWK 327 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce-------EEeeeccCccccCceEE
Confidence 78999999999999999999999999999999999999999999999999996655 99999996444334443
Q ss_pred cCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCC
Q 042883 470 GHKKAVSYVKFLSN--NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 470 ~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~ 545 (597)
..+.|-.++|.|. ..++++..||+|+-+|+|. ++++.+++.|.++|.++++++. -.++++++.|+.|++|++...
T Consensus 328 -~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 328 -FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred -eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 4678999999998 7789999999999999998 5999999999999999999887 457888999999999998765
Q ss_pred ccccccccCCCCCCCcCcCCCcceEEEEEccCCCe-EEEecCcccEEEEEec
Q 042883 546 KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT-MLTANRKGAIKVLVLA 596 (597)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-l~s~~~dg~v~iwd~~ 596 (597)
.+........ .-+...+.++.|+-.+ ++.||..+.++|||+.
T Consensus 407 ~~~~v~~~~~---------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 407 SPKSVKEHSF---------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CCcccccccc---------cccceeecccCCCcceEEEecCccceEEEeecc
Confidence 5432222110 0233566777887654 6678888899999974
No 99
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=2.3e-23 Score=226.37 Aligned_cols=222 Identities=18% Similarity=0.274 Sum_probs=176.0
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC----e----eeeEEeecc
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS----Q----SVMEYEEHE 421 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~ 421 (597)
+|.+++|+......... ........|...|++++|+| ++.+|++|+.|+.|+|||+... . ....+. +.
T Consensus 457 ~gl~~~~~~~~~~~~~~--~~~~~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~ 532 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--LKQGDLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SR 532 (793)
T ss_pred hhhhhhhcccceEEEEe--eccccccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-cc
Confidence 67788888765411100 01112234788999999999 7899999999999999997532 1 122332 34
Q ss_pred ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC-C-CeEEEeeCCCcEEEEE
Q 042883 422 KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS-N-NELASASTDSSLRLWD 499 (597)
Q Consensus 422 ~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~-~-~~l~s~~~d~~v~iwd 499 (597)
..|.+++|+|..+.++++++.|+. |++||+.+ ++.+..+.+|.+.|++++|+| + .+|++|+.||.|++||
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~-------v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGV-------VQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCe-------EEEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 679999999867889999986554 99999987 677888899999999999997 4 6899999999999999
Q ss_pred cCCCcceeeeeCCCCceeEEEEe-ecCCEEEEEeCCCcEEEEEccCCcc-ccccccCCCCCCCcCcCCCcceEEEEEccC
Q 042883 500 VKENLPLHTFRGHTNEKNFVGLT-VNNEYIACGSETNEVFVYHKAISKP-AASHRFGSDADHVDDDMGSYFISAVCWKSD 577 (597)
Q Consensus 500 ~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~ 577 (597)
++++..+..+..+ ..+.++.|+ ++|.+|++|+.||.|++||++.++. +..+. +|...|+++.|. +
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----------~h~~~V~~v~f~-~ 671 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----------GHSKTVSYVRFV-D 671 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----------CCCCCEEEEEEe-C
Confidence 9999888888754 578899995 4699999999999999999987652 32222 468899999997 6
Q ss_pred CCeEEEecCcccEEEEEec
Q 042883 578 SPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 578 ~~~l~s~~~dg~v~iwd~~ 596 (597)
+.+|++++.|++|+|||+.
T Consensus 672 ~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 672 SSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CCEEEEEECCCEEEEEeCC
Confidence 7899999999999999975
No 100
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-23 Score=182.38 Aligned_cols=256 Identities=14% Similarity=0.223 Sum_probs=187.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEec-CCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNK-YTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~~l~s~~~dg~i~i 405 (597)
+|.+-|.++.|++.|+++||++.|++|+|||....... ......-..|.+.|..|.|.+ .-|..+++++.|+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 68899999999999999999999999999997544111 122223446889999999965 34889999999999999
Q ss_pred EeCCC---------CeeeeEEeeccceeEEEEeCCC-CCceEEeecCCCcccCCCCeEEEEEccCCCcc-----eeee--
Q 042883 406 WDVTT---------SQSVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-----LHVF-- 468 (597)
Q Consensus 406 wd~~~---------~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-----~~~~-- 468 (597)
|.-.. .....++....+.|+++.|.|. -|-.+++++.||. ++||+.-..... ...+
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~-------lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI-------LRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE-------EEEEecCCccccccchhhhhhhh
Confidence 97521 1234566677889999999984 3556788886554 999987653321 1112
Q ss_pred -----ccCCCceEEEEecCC----CeEEEeeCC-----CcEEEEEcCC----CcceeeeeCCCCceeEEEEeec-CC---
Q 042883 469 -----NGHKKAVSYVKFLSN----NELASASTD-----SSLRLWDVKE----NLPLHTFRGHTNEKNFVGLTVN-NE--- 526 (597)
Q Consensus 469 -----~~~~~~v~~v~~~~~----~~l~s~~~d-----~~v~iwd~~~----~~~~~~~~~~~~~v~~v~~s~~-g~--- 526 (597)
..+..+..+|.|+|. .+|++|+.+ +.++||.... ...+.++.+|..+|+.++|.|+ |+
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 235567889999987 346666655 4789997654 3356677899999999999997 43
Q ss_pred EEEEEeCCCcEEEEEccCCc-cc---------cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 527 YIACGSETNEVFVYHKAISK-PA---------ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~-~~---------~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+||+++.|| |+||.+.... .+ ....+.-. ....-..|.+.|+.+.|+-.|..|++.|.||.|++|.
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~-~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE-KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE-EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 689999999 9999987422 11 00000000 0111235799999999999999999999999999996
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=9.1e-24 Score=184.60 Aligned_cols=247 Identities=19% Similarity=0.247 Sum_probs=189.8
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
....|.++.|+|.++.|++++.||.+++|++... .....+.|..++.+++|.+ ...+++|+.||.|+.+|
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeeccC--CceEEEeccCceEEEEE
Confidence 3567999999999999999999999999999876 4455667889999999995 67899999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELA 487 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~ 487 (597)
+.++... .+..|..+|.+|.+++ ....+++|| +|+.|++||.+. ......+.. ...|.++... ++.|+
T Consensus 82 ln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgs-------WD~~ik~wD~R~-~~~~~~~d~-~kkVy~~~v~-g~~Lv 149 (323)
T KOG1036|consen 82 LNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGS-------WDKTIKFWDPRN-KVVVGTFDQ-GKKVYCMDVS-GNRLV 149 (323)
T ss_pred ecCCcce-eeccCCCceEEEEeec-cCCeEEEcc-------cCccEEEEeccc-ccccccccc-CceEEEEecc-CCEEE
Confidence 9886554 4557899999999998 778888888 455599999996 444444443 3478888754 36889
Q ss_pred EeeCCCcEEEEEcCCCcceeeee--CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc--ccccCCCCCCCcCc
Q 042883 488 SASTDSSLRLWDVKENLPLHTFR--GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA--SHRFGSDADHVDDD 563 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~ 563 (597)
+|+.|..|.+||+++.....+.. ...-.+.+|++-|++.=+++++-||+|.+=.+....... .+.|........+.
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT 229 (323)
T ss_pred EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence 99999999999999865444332 234467899999988878899999998876665542222 22222211111111
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.-..+|++|+|+|-...|+|||.||.|.+||+-
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 125689999999999999999999999999974
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-24 Score=207.09 Aligned_cols=230 Identities=21% Similarity=0.326 Sum_probs=194.3
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee
Q 042883 335 IEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV 414 (597)
Q Consensus 335 i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 414 (597)
+.|+. .+.+++|. ...|++|+..++ ........+...|+++.|++ +|.+|++|..+|.|.|||....+.+
T Consensus 183 ldWss-~n~laVal-g~~vylW~~~s~-------~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 183 LDWSS-ANVLAVAL-GQSVYLWSASSG-------SVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKT 252 (484)
T ss_pred hhccc-CCeEEEEe-cceEEEEecCCC-------ceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhcccc
Confidence 46773 45677765 557999998877 11111112278999999999 8999999999999999999999999
Q ss_pred eEEee-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCC
Q 042883 415 MEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTD 492 (597)
Q Consensus 415 ~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d 492 (597)
..+.+ |...|-+++|. ...+.+|+.|+. |..+|++.......++.+|...|..++|+++ .++++|+.|
T Consensus 253 ~~~~~~h~~rvg~laW~---~~~lssGsr~~~-------I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD 322 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWN---SSVLSSGSRDGK-------ILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND 322 (484)
T ss_pred ccccCCcCceeEEEecc---CceEEEecCCCc-------EEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCc
Confidence 99988 99999999997 478888886555 9999999855555558889999999999999 889999999
Q ss_pred CcEEEEEcCCCcceeeeeCCCCceeEEEEeec-CCEEEEEe--CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcce
Q 042883 493 SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN-NEYIACGS--ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI 569 (597)
Q Consensus 493 ~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i 569 (597)
+.+.|||.....++..+..|...|..++|+|- ..+||+|+ .|+.|++||..+++.+..... ...|
T Consensus 323 N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------------gsQV 390 (484)
T KOG0305|consen 323 NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------------GSQV 390 (484)
T ss_pred cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------------CCce
Confidence 99999999889999999999999999999995 66888865 589999999999999888775 6679
Q ss_pred EEEEEccCCCeEEE--ecCcccEEEEEec
Q 042883 570 SAVCWKSDSPTMLT--ANRKGAIKVLVLA 596 (597)
Q Consensus 570 ~~v~~~~~~~~l~s--~~~dg~v~iwd~~ 596 (597)
.++.|++..+-|++ |..++.|.||+..
T Consensus 391 csL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 391 CSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 99999999877766 5578899999874
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=8.7e-24 Score=180.69 Aligned_cols=206 Identities=18% Similarity=0.310 Sum_probs=178.7
Q ss_pred CceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCC
Q 042883 371 PMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 371 ~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d 450 (597)
++...+|..+++.|.++. +|.+|++++.|....||-..+|+.+.++.+|.+.|++++++. +...+++|+.|
T Consensus 3 pi~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD------- 73 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSAD------- 73 (327)
T ss_pred ccccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-Ccceeeecccc-------
Confidence 456678999999999998 899999999999999999889999999999999999999997 88999999855
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeC------CCcEEEEEcC-------CCcceeeeeCCCCcee
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASAST------DSSLRLWDVK-------ENLPLHTFRGHTNEKN 517 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~------d~~v~iwd~~-------~~~~~~~~~~~~~~v~ 517 (597)
.++++||+.+ ++.+..++ ...+|..+.|++++.++..+. .+.|.++|++ ...++..+..+.+.++
T Consensus 74 ~t~kLWDv~t-Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 74 QTAKLWDVET-GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ceeEEEEcCC-CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 4599999998 88888887 567899999999944444333 3569999998 4567888888889999
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 518 FVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 518 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+-|+|-+.+|++|..||.|.+||+++|+....... -|...|++++++++..++++++.|.+.++||+.+
T Consensus 152 ~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~----------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE----------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred eeeecccCCEEEEecCCCcEEEEEcccCceeeechh----------hhccccccccccCCcceEEecccCccceeeeccc
Confidence 999999999999999999999999999865543321 3578999999999999999999999999999864
No 104
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.1e-25 Score=197.82 Aligned_cols=208 Identities=18% Similarity=0.318 Sum_probs=165.4
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEec--CCCceeEEEEecCCCCEEEEeeCCC
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP--TRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
.+.+|..+|.-+.||||.++|++++.+..+.+||+.++ .....++ +...+.+++|.| ++..+++|+.|+
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg--------d~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr 334 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG--------DLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDR 334 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcc--------hhhhhcccCcCCCcceeEEcc-CCceeEecCCCC
Confidence 45689999999999999999999999999999999998 2222222 347899999999 788999999999
Q ss_pred cEEEEeCCCCeeeeEEeecc-ceeEEEEeCCCCCceEEeecCCCcc----------------------------------
Q 042883 402 IVTIWDVTTSQSVMEYEEHE-KRAWSVDFSCTEPSMLVSGSDDCKV---------------------------------- 446 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~~---------------------------------- 446 (597)
.+..||++. ......++.. ..|.++++.+ ||.++++.+.|..+
T Consensus 335 ~i~~wdlDg-n~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 335 TIIMWDLDG-NILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred cEEEecCCc-chhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence 999999864 4444443322 4578888887 66666666666655
Q ss_pred cCCCCeEEEEEccCCCcceeeeccCCCceEEE--Eec--CCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEe
Q 042883 447 GSADHHIHYYDLRNISQPLHVFNGHKKAVSYV--KFL--SNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLT 522 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v--~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s 522 (597)
...+..|++||+.. .+.+..+.||...-.-+ +|- .+..+++||.|+.|+||+..+++++..+.||...|++|+|+
T Consensus 413 nL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred EcccCeeEEeecch-hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence 45566789999985 67777788887532222 232 23679999999999999999999999999999999999999
Q ss_pred ecC-CEEEEEeCCCcEEEEEcc
Q 042883 523 VNN-EYIACGSETNEVFVYHKA 543 (597)
Q Consensus 523 ~~g-~~l~~~~~d~~i~iwd~~ 543 (597)
|.. .++|+||+||+|+||...
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCC
Confidence 964 578999999999999764
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=206.56 Aligned_cols=247 Identities=16% Similarity=0.251 Sum_probs=200.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCC-CceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTR-SKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
++.+.|+++.-+|--+.++.|..+|+|.|+++..+ ..+..+.+. +.|+.++|.-++..++++|+..|.+.+
T Consensus 200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred ccccceeEeccCCcceEEEEeccCceEEEEEcccC--------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 57799999999998899999999999999999887 455566665 999999999877778889988899999
Q ss_pred EeCCCCeeeeEEe-ec----------------------------------------------cceeEEEEeCCCCCceEE
Q 042883 406 WDVTTSQSVMEYE-EH----------------------------------------------EKRAWSVDFSCTEPSMLV 438 (597)
Q Consensus 406 wd~~~~~~~~~~~-~~----------------------------------------------~~~v~~~~~~~~~~~~l~ 438 (597)
||++..+....+. .| ..+..++.|.-..+.++.
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 9998665443332 34 344444444433445555
Q ss_pred eecCCCcc------------------------------------------------------------------------
Q 042883 439 SGSDDCKV------------------------------------------------------------------------ 446 (597)
Q Consensus 439 s~~~d~~~------------------------------------------------------------------------ 446 (597)
+++.|++.
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 55555543
Q ss_pred ----------------------------------cCCCCeEEEEEccCCCcceeee---ccCCCceEEEEecCC-CeEEE
Q 042883 447 ----------------------------------GSADHHIHYYDLRNISQPLHVF---NGHKKAVSYVKFLSN-NELAS 488 (597)
Q Consensus 447 ----------------------------------~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~v~~~~~-~~l~s 488 (597)
|...|.|.+|++.+ +-....+ ..|.++|++++...- ..+++
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCceeEEEecCCCceEEE
Confidence 77788899999987 5556666 479999999998766 66899
Q ss_pred eeCCCcEEEEEcCCC-----------------------------------------cceeeeeCCCCceeEEEEeecCCE
Q 042883 489 ASTDSSLRLWDVKEN-----------------------------------------LPLHTFRGHTNEKNFVGLTVNNEY 527 (597)
Q Consensus 489 ~~~d~~v~iwd~~~~-----------------------------------------~~~~~~~~~~~~v~~v~~s~~g~~ 527 (597)
++.+|.+++||..+. +.++.|.||++.|++++|||||++
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 999999999998653 233456689999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc-ccEEEEE
Q 042883 528 IACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK-GAIKVLV 594 (597)
Q Consensus 528 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d-g~v~iwd 594 (597)
|++++.|++|++||+.++..+-.+.. ..+++++.|+|+|++|||...| .-|++|-
T Consensus 591 lisasmD~tIr~wDlpt~~lID~~~v------------d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTLIDGLLV------------DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEeecCCcEEEEeccCcceeeeEec------------CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99999999999999999999988776 7789999999999999999888 6699995
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.8e-24 Score=205.90 Aligned_cols=239 Identities=13% Similarity=0.208 Sum_probs=197.9
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-EEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-LSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|...|..+++.+. ..+++++.||++++|+-... .........++.+.|.. +++.+-++..+++|+.|+.|
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~-----~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGK-----QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCc-----ccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4589999999988764 47999999999999997544 11111223345566655 77776456679999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
.+|......+..++.+|...|.+++... ++. +++||. |.++++|-.. +....+.+|...|++++.-|.
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSW-------D~TakvW~~~---~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSW-------DSTAKVWRIG---ELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCC-cCc-eEeccc-------ccceEEecch---hhhcccCCcchheeeeeecCC
Confidence 9999999999999999999999999875 555 888885 5559999764 566678999999999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
+.++|||.|.+|++|.- ++.+++|.+|...|.++++-+++. +++++.||.|++|++ +|..+..+.
T Consensus 152 ~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~----------- 216 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH----------- 216 (745)
T ss_pred CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee-----------
Confidence 99999999999999974 788999999999999999988764 678889999999999 666665553
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|.++....++..++++|.|++++||+..
T Consensus 217 ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 579999999988888899999999999999853
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-24 Score=208.05 Aligned_cols=245 Identities=17% Similarity=0.271 Sum_probs=198.6
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEE-ecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSW-NKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~l~s~~~dg~ 402 (597)
...+|.+.|+.+...-+|+.|++++.|-+|++|+..... .........|...|.|+++ .+ +...+|+|+.|+.
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRK 141 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeeccc-CceeEEecCCCcc
Confidence 345799999999999999999999999999999987651 1122334468899999999 55 7889999999999
Q ss_pred EEEEeCCCC--eee--------eEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC
Q 042883 403 VTIWDVTTS--QSV--------MEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH 471 (597)
Q Consensus 403 i~iwd~~~~--~~~--------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 471 (597)
|.+||+.++ +.+ ..+. ++..+|++++.++ .+.+|++|+..+. +++||.++ .+.+..+.||
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~-------lr~wDprt-~~kimkLrGH 212 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKD-------LRLWDPRT-CKKIMKLRGH 212 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccc-------eEEecccc-ccceeeeecc
Confidence 999999877 222 2223 7888999999998 7789999886554 99999998 6777788899
Q ss_pred CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc-cc
Q 042883 472 KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP-AA 549 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~-~~ 549 (597)
...|..+..+++ ..++++|.||+|++||+...+++.++..|...|+++..+|+=.++++|+.||.|+.=|+++... ..
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl 292 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL 292 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheE
Confidence 999999999999 7899999999999999999999999999999999999999999999999999999999988522 22
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.... ..+|..+..+....-+-+++.|+.|+-|..
T Consensus 293 ick~------------daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 293 ICKE------------DAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred eecC------------CCchhhhhhccccCCceeeeccccceecCC
Confidence 2221 445666666544433455566777777754
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=188.24 Aligned_cols=204 Identities=14% Similarity=0.257 Sum_probs=165.0
Q ss_pred cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe--eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeE
Q 042883 376 PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ--SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i 453 (597)
.|.+.+..+.|-+ +...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.+ ++..+++++.|+. +
T Consensus 173 ~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~-------~ 243 (459)
T KOG0288|consen 173 AHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKN-------L 243 (459)
T ss_pred ccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCc-------e
Confidence 4677888999998 67899999999999999987765 6777888889999999998 7777777776554 9
Q ss_pred EEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCC---------------------------------------C
Q 042883 454 HYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTD---------------------------------------S 493 (597)
Q Consensus 454 ~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d---------------------------------------~ 493 (597)
++|++.. .....++.+|.+.|+++.|... ..+++|+.| +
T Consensus 244 r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dk 322 (459)
T KOG0288|consen 244 RLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDK 322 (459)
T ss_pred eeeeccc-hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccccc
Confidence 9999997 7888999999999998887654 335555555 5
Q ss_pred cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEE
Q 042883 494 SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVC 573 (597)
Q Consensus 494 ~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~ 573 (597)
+|++||+++..+......+ +.|+++..+++|..|.+.+.|.++.++|+++......+....+.. ....+.+.
T Consensus 323 kvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~-------asDwtrvv 394 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC-------ASDWTRVV 394 (459)
T ss_pred ceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc-------ccccceeE
Confidence 5555555555555555544 378999999999999999999999999999998887776543222 33489999
Q ss_pred EccCCCeEEEecCcccEEEEEecC
Q 042883 574 WKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 574 ~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
|||++.|+++||.||.|+||++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccC
Confidence 999999999999999999999864
No 109
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=191.00 Aligned_cols=205 Identities=23% Similarity=0.405 Sum_probs=180.1
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE--------eeccceeEEEEeCCCCCceEEeecCCC
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY--------EEHEKRAWSVDFSCTEPSMLVSGSDDC 444 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~d~ 444 (597)
+.++..+.+-|..|+| ++.+|++|+.||.|-+||..+|+....+ --+..+|.++.|+. +...+++|+.||
T Consensus 208 IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDG 285 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDG 285 (508)
T ss_pred eecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCC
Confidence 4455677888999999 8999999999999999999988765443 34678999999998 899999998655
Q ss_pred cccCCCCeEEEEEccCCCcceeeec-cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEe
Q 042883 445 KVGSADHHIHYYDLRNISQPLHVFN-GHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLT 522 (597)
Q Consensus 445 ~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s 522 (597)
. |++|.+++ +.+++.|. +|...|+++.|+.| ..+++++.|.+++|--+.+|+.+..+.||.+.|+...|+
T Consensus 286 k-------IKvWri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 286 K-------IKVWRIET-GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred c-------EEEEEEec-chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 5 99999998 78888886 89999999999999 789999999999999999999999999999999999999
Q ss_pred ecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEec
Q 042883 523 VNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 523 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~ 596 (597)
+||.++++++.||+|++|+..+...+.++.... ...+|+++..-|.+ ..++.+...++|.|.++.
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~---------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLG---------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCC---------CcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 999999999999999999999999998887653 27789998877744 568888888899888763
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=192.58 Aligned_cols=237 Identities=17% Similarity=0.266 Sum_probs=188.0
Q ss_pred CEEEEeeC-CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeec
Q 042883 342 ELFASAGV-SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEH 420 (597)
Q Consensus 342 ~~l~t~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 420 (597)
.+++++.. ...|.+|.+... .......--+++|.+++-+| .|.+|+.|+..|.|++|.+.+|..+..+.+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~-------~~~~q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aH 122 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKK-------DQVVQYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAH 122 (476)
T ss_pred hheeeecccCccccccccCch-------hhhhhhcccccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhh
Confidence 35555433 457888887654 11112223467899999998 7889998889999999999999999999999
Q ss_pred cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC--------CCcceeeeccCCCceEEEEecCC---CeEEEe
Q 042883 421 EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN--------ISQPLHVFNGHKKAVSYVKFLSN---NELASA 489 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~~~v~~v~~~~~---~~l~s~ 489 (597)
...|+++.|+- ++.+|+|||.||. |.+|++.. .-+++..|..|.-+|+++...+. .+++|+
T Consensus 123 YQ~ITcL~fs~-dgs~iiTgskDg~-------V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 123 YQSITCLKFSD-DGSHIITGSKDGA-------VLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred ccceeEEEEeC-CCcEEEecCCCcc-------EEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 99999999996 9999999997665 99998742 24678889999999999998776 679999
Q ss_pred eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccc------c-ccCCCCCCCcC
Q 042883 490 STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAS------H-RFGSDADHVDD 562 (597)
Q Consensus 490 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~------~-~~~~~~~~~~~ 562 (597)
|.|.++++||+..+..+.++. ....+.+++++|.+..+++|+.+|.|.+.++........ . ..+..... -
T Consensus 195 S~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~--~ 271 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV--L 271 (476)
T ss_pred cCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee--e
Confidence 999999999999999888876 467789999999999999999999999998765432111 0 00001111 1
Q ss_pred cCCCc--ceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 563 DMGSY--FISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 563 ~~h~~--~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+|.+ .|++++.+-||..|++|+.||.|+|||+.+
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 23455 999999999999999999999999999853
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.1e-24 Score=198.65 Aligned_cols=245 Identities=13% Similarity=0.261 Sum_probs=197.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
.+.|..-|.++.++...++++||+ .|.|+|||+........... .........|.++...| +++.|++|+.-.++.
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~p-dgrtLivGGeastls 490 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLS 490 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccc--ccccCcccceeeeEecC-CCceEEeccccceee
Confidence 346899999999999999999997 67899999987633222111 12223456789999999 789999999999999
Q ss_pred EEeCCCCeee--eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 405 IWDVTTSQSV--MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 405 iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
|||+...... ..+....-..++++++| |.++.+++..| |+|.|||+.+ ...++.|.+|.+.+.++.+++
T Consensus 491 iWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsd-------GnI~vwDLhn-q~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSD-------GNIAVWDLHN-QTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccC-------CcEEEEEccc-ceeeecccCCCCCceeEEecC
Confidence 9999765432 23333345678899999 77777777754 5599999998 788999999999999999999
Q ss_pred C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc
Q 042883 483 N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD 561 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 561 (597)
+ ..|.+|+-|++|+-||++.++.+.... ..+.|.++..+|.|.+|++|-.++.+.|........ ..+
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yql---------- 629 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQL---------- 629 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-eee----------
Confidence 9 679999999999999999998777654 467899999999999999999999888877543222 111
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+.|...|.++.|.+.|+|+++.+.|+.+-.|..
T Consensus 630 -hlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 630 -HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred -cccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 236899999999999999999999999988864
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=207.98 Aligned_cols=203 Identities=17% Similarity=0.327 Sum_probs=168.8
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.||.+.|.++.|+.++ +|++++.|.+|++|++... .-+..+.|...|+||+|+|.+.++|++|+-||.
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~--------~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK--------ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCc--------ceeeEEecCCeeEEEEecccCCCcEeecccccc
Confidence 4556899999999999754 8999999999999999865 667788999999999999999999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec--cC------CCc
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--GH------KKA 474 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--~~------~~~ 474 (597)
|+||++...+.+.-. .-..-|++++|.| +|...+.|+. +|.+++|+... .+....+. .| ...
T Consensus 434 vRiWsI~d~~Vv~W~-Dl~~lITAvcy~P-dGk~avIGt~-------~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWN-DLRDLITAVCYSP-DGKGAVIGTF-------NGYCRFYDTEG-LKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred eEEeecCcCeeEeeh-hhhhhheeEEecc-CCceEEEEEe-------ccEEEEEEccC-CeEEEeeeEeeccCccccCce
Confidence 999999776555443 4457899999999 7999998885 55599999985 33333221 11 237
Q ss_pred eEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCc--eeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 475 VSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGHTNE--KNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 475 v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~--v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
|+++.|.|. ..+++.+.|..|+|||.+...++..|+|+.+. -....|+.||++|++++.|..|+||+...
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 999999988 66999999999999999999999999876543 24578999999999999999999999743
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1e-23 Score=183.92 Aligned_cols=207 Identities=16% Similarity=0.284 Sum_probs=173.4
Q ss_pred ceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC------------C------eeeeEEeeccceeEEEEeCCCC
Q 042883 372 MVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT------------S------QSVMEYEEHEKRAWSVDFSCTE 433 (597)
Q Consensus 372 ~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~ 433 (597)
.....|.+++.+.+|+| +|.++++|+.|.+|+|+|+.. + -.++++..|...|+++.|+| .
T Consensus 106 ~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred EEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 34456889999999999 899999999999999999861 1 24677788999999999999 8
Q ss_pred CceEEeecCCCcccCCCCeEEEEEccCCC--cceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeee-
Q 042883 434 PSMLVSGSDDCKVGSADHHIHYYDLRNIS--QPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTF- 509 (597)
Q Consensus 434 ~~~l~s~~~d~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~- 509 (597)
..+|++|+.|++ |++||+.... +..+.+. ...+|.++.|+|. .+|++|..-.++++||+.+.++...-
T Consensus 184 e~ILiS~srD~t-------vKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 184 ETILISGSRDNT-------VKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred hheEEeccCCCe-------EEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 999999997655 9999997521 1122232 3468999999999 66778888889999999987765543
Q ss_pred --eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 510 --RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 510 --~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
..|.+.|++|.+++.|++.++|+.||.|+|||--+++.+.++... |....|.+..|..+|+|+++.|.|
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A---------H~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA---------HGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh---------cCCceeeeEEEccCCeEEeecCCc
Confidence 368899999999999999999999999999998888888877643 237789999999999999999999
Q ss_pred ccEEEEEecC
Q 042883 588 GAIKVLVLAA 597 (597)
Q Consensus 588 g~v~iwd~~~ 597 (597)
..|++|.+.+
T Consensus 327 S~vkLWEi~t 336 (430)
T KOG0640|consen 327 STVKLWEIST 336 (430)
T ss_pred ceeeeeeecC
Confidence 9999999864
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=192.64 Aligned_cols=206 Identities=19% Similarity=0.320 Sum_probs=176.2
Q ss_pred ecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc--------
Q 042883 375 MPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-------- 446 (597)
Q Consensus 375 ~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-------- 446 (597)
.+|..+|.+++=+|..-..+++|+.||.|+|||+....+..++..|.+.|.+|.+.. ..++++|+|.++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC
Confidence 467889999999995558899999999999999999999999999999999999974 777888888865
Q ss_pred -----------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcC
Q 042883 447 -----------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVK 501 (597)
Q Consensus 447 -----------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~ 501 (597)
++....|.|||... ..|+..+.-....|.++.|+|. ..|++++.|+.|.+||++
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence 34444688999876 7788888877788999999998 778999999999999999
Q ss_pred CCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc-cccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 502 ENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK-PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 502 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
.+.+++.+.. ...-+.|+|+|.+..+++|+.|..++.||++... ++..+. +|.+.|.+|+|||.|+-
T Consensus 219 ~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-----------dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 219 QASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-----------DHVSAVMDVDFSPTGQE 286 (433)
T ss_pred cCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhc-----------ccceeEEEeccCCCcch
Confidence 9999888763 3345789999988889999999999999988643 333332 46899999999999999
Q ss_pred EEEecCcccEEEEEec
Q 042883 581 MLTANRKGAIKVLVLA 596 (597)
Q Consensus 581 l~s~~~dg~v~iwd~~ 596 (597)
|++||.|.+|+||.+.
T Consensus 287 fvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVN 302 (433)
T ss_pred hccccccceEEEeecC
Confidence 9999999999999864
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.7e-25 Score=211.47 Aligned_cols=236 Identities=16% Similarity=0.322 Sum_probs=206.6
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
...|...|.++..-..++.+++|+.|..+.+|.+... ....-..+|..+|-+|.|++ ...+|++|+.+|+|+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-------~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-------NAITSLTGHESPIESLTFDT-SERLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCC-------chhheeeccCCcceeeecCc-chhhhcccccCCcee
Confidence 3458888888888778889999999999999998765 22233578999999999998 788999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN 484 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~ 484 (597)
+||+...+.++++.+|...+.++.|+| -+.++++|+.|+. +.+||.+. ..+...+.+|...|..+.|+|+|
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd-------~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTD-------LKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeecc-ceEEecccccccc-------ceehhhhc-cCceeeecCCcceeEEEeecCCC
Confidence 999999999999999999999999999 8888888886554 99999997 66889999999999999999995
Q ss_pred -eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 485 -ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 485 -~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
++++|+.|.+++|||...|+.+..|..|.+.+.++.|+|..-+++.||.|+.|++||+++-..+......
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------- 237 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------- 237 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---------
Confidence 7889999999999999999999999999999999999999999999999999999999876665544321
Q ss_pred CCCcceEEEEEccCCCeEEEecCcc
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKG 588 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg 588 (597)
...|.+.+|+|++..+++|..+.
T Consensus 238 --~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 238 --TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --cCCceeeeecCCceeeecCchhh
Confidence 56799999999999888886553
No 116
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=187.19 Aligned_cols=205 Identities=20% Similarity=0.416 Sum_probs=163.3
Q ss_pred EecCCCceeEEEEecCC-CCEEEEeeCCCcEEEEeCCC----------------CeeeeEEeeccceeEEEEeCCCCCce
Q 042883 374 EMPTRSKLSCLSWNKYT-KNLIASSDYDGIVTIWDVTT----------------SQSVMEYEEHEKRAWSVDFSCTEPSM 436 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~ 436 (597)
..+|.+.+..+...+.+ ..+.++-+..|.|+||++.. .+++.++.+|...=++++|+|.....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34577778888777643 34555667789999999742 14677888999999999999955555
Q ss_pred EEeecCCCcccCCCCeEEEEEccCCCcce--eeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCc--ceeeee
Q 042883 437 LVSGSDDCKVGSADHHIHYYDLRNISQPL--HVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENL--PLHTFR 510 (597)
Q Consensus 437 l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~--~~~~~~ 510 (597)
+++|. .-+.|++|...++...+ ..|.+|...|-.+.|+|. +.|++||.||+|+|||+|.+. .-...+
T Consensus 227 LlsGD-------c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 227 LLSGD-------CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cccCc-------cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 66654 33559999998744333 335679999999999998 889999999999999999872 223337
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC---CccccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecC
Q 042883 511 GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI---SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANR 586 (597)
Q Consensus 511 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~ 586 (597)
.|.+.|+.|+|+.+-.+|++|+.||+++|||++. ++++..+.+ |..+|++|.|+|.. ..|+++|.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-----------Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-----------HKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-----------ccCCeeEEEeccccCceEEeccC
Confidence 8999999999999888999999999999999985 456666653 79999999999854 56888899
Q ss_pred cccEEEEEec
Q 042883 587 KGAIKVLVLA 596 (597)
Q Consensus 587 dg~v~iwd~~ 596 (597)
|..|.|||++
T Consensus 369 D~QitiWDls 378 (440)
T KOG0302|consen 369 DNQITIWDLS 378 (440)
T ss_pred CCcEEEEEee
Confidence 9999999985
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2e-22 Score=176.30 Aligned_cols=232 Identities=16% Similarity=0.260 Sum_probs=183.3
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
...+.|..++.+++|.+ ...+++|+.||.|+.+|+.++ .......|..+|.||.+++ ..+.+++|++|++
T Consensus 48 ~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--------~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ 117 (323)
T KOG1036|consen 48 KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--------NEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKT 117 (323)
T ss_pred hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC--------cceeeccCCCceEEEEeec-cCCeEEEcccCcc
Confidence 34467999999999997 456899999999999999987 4445567899999999998 7889999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEec
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFL 481 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~ 481 (597)
|++||.+....+..+.. ...|.++... ++.|+.|+. +..+.+||+++...+.... ......+.+|+..
T Consensus 118 ik~wD~R~~~~~~~~d~-~kkVy~~~v~---g~~LvVg~~-------~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 118 IKFWDPRNKVVVGTFDQ-GKKVYCMDVS---GNRLVVGTS-------DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALV 186 (323)
T ss_pred EEEEecccccccccccc-CceEEEEecc---CCEEEEeec-------CceEEEEEcccccchhhhccccceeEEEEEEEe
Confidence 99999987555555543 4489998875 456666554 4559999999855554322 2345678999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcCCC----cceeeeeCCCC---------ceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 482 SN-NELASASTDSSLRLWDVKEN----LPLHTFRGHTN---------EKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~---------~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
|+ .-+++++-||.|.+=.+... +....|+-|.. +|++|+|+|-...+++||.||.|.+||+.+.+.
T Consensus 187 pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence 98 55888999999988666554 34455555532 788999999988999999999999999999888
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
+..+..- ...|.+++|+.+|..||+++.
T Consensus 267 l~q~~~~-----------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 267 LKQLAKY-----------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhccCC-----------CCceEEEEeccCCCeEEEEec
Confidence 7766531 456999999999999998853
No 118
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1e-22 Score=192.73 Aligned_cols=300 Identities=17% Similarity=0.229 Sum_probs=219.3
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHhhhhhhccCccccCcccccCcCCCCcchhhHHHHHHhhhccccceeeeeeccccccCC
Q 042883 249 TAARKQRVRAQLNDLKEYYLQKRRQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTQYSRLRVIAELRHGDLFHA 328 (597)
Q Consensus 249 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (597)
+-.+.+.+.+.|+...+.|+..|..+.. ..++. ..+...++....++...+-..-...||
T Consensus 340 VPaY~r~irErFeRcLDLYL~PR~rK~r----------lniDp----------e~LiPkLPsp~dLrPFPt~~~lvyrGH 399 (733)
T KOG0650|consen 340 VPAYERSIRERFERCLDLYLAPRVRKMR----------LNIDP----------ESLIPKLPSPKDLRPFPTRCALVYRGH 399 (733)
T ss_pred chhHHHHHHHHHHHhHHhhhCcccccce----------ecCCH----------HHhcccCCChhhcCCCcceeeeeEecc
Confidence 3455666777777777777665544210 01111 112222233333333333333334589
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
.+.|.+|+.+|.|.+|++|+.||+|+||.+.++ ..+......+.|.+|+|+|....-++..+..+.+.|.+.
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 999999999999999999999999999999998 444445557799999999965544444444445555543
Q ss_pred CCCe-------------------------------------eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCC
Q 042883 409 TTSQ-------------------------------------SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451 (597)
Q Consensus 409 ~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~ 451 (597)
.-|. -+...-.|...|..+.|+- .|.+|++...++. ..
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~----~~ 546 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSG----NK 546 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCC----cc
Confidence 2110 0122335778899999998 8999988876553 56
Q ss_pred eEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEE
Q 042883 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 452 ~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 530 (597)
.|.|+++.. .....-|....+.|..+.|+|. .+|++++. ..|+|||+.....+..+......|.+++++|.|..|+.
T Consensus 547 ~VliHQLSK-~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLSK-RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEeccc-ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 799999986 4455566556778999999999 77777665 58999999998888888877889999999999999999
Q ss_pred EeCCCcEEEEEccCC-ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 531 GSETNEVFVYHKAIS-KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
|+.|+.+..||+..+ ++..++. .|...+++|+|++.-.+|++|+.||++.||.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr-----------~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLR-----------LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhh-----------hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999999999854 5666655 3689999999999999999999999999885
No 119
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5e-24 Score=216.94 Aligned_cols=250 Identities=18% Similarity=0.302 Sum_probs=201.6
Q ss_pred CCCCcEEEEEEcCCCCE----EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 327 HAANIISSIEFDRDDEL----FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~----l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
......+.++|.+.|.. |+.|..||.|.+||.... ..............|.+.|.+++|++..+++|++|+.||.
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence 34567789999997765 888999999999998763 1111222233445689999999999988889999999999
Q ss_pred EEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC--CceEEE
Q 042883 403 VTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK--KAVSYV 478 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~v 478 (597)
|.|||+...+...... ...+.|.+++|+.....+|++++.+|. +.|||++. .+++..+..+. ..+..+
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~-------~~iWDlr~-~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR-------AVIWDLRK-KKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC-------ceeccccC-CCcccccccCCCccceeee
Confidence 9999998755444432 245789999999877788999886555 89999998 56666665444 357899
Q ss_pred EecCC--CeEEEeeCCC---cEEEEEcCC-CcceeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCcccccc
Q 042883 479 KFLSN--NELASASTDS---SLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 479 ~~~~~--~~l~s~~~d~---~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
.|+|+ ..+++++.|. .|.+||+|. ..+++.+.+|..+|.++.|++.+ .++++++.|+.|.+|+..+++.+..+
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 99999 6677777654 499999987 56788889999999999999976 78999999999999999999998888
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEec
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~~ 596 (597)
... ..++..+.|.|... .+++++.||.|-||.+.
T Consensus 293 p~~-----------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 293 PAQ-----------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCC-----------CcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 753 78999999999776 67788999999999874
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.1e-23 Score=187.90 Aligned_cols=221 Identities=13% Similarity=0.193 Sum_probs=184.4
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-.++|.+++-+|+|.+++.|+-.|.+++|.+.++ ........|-..|+++.|+- ++.+|++|+.||.|.+|+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-------~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-------ILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWL 151 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccc-------cHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEE
Confidence 4678999999999999999989999999999998 33344467889999999997 899999999999999998
Q ss_pred CC---------CCeeeeEEeeccceeEEEEeCCC-CCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEE
Q 042883 408 VT---------TSQSVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477 (597)
Q Consensus 408 ~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 477 (597)
+. +-.+...+..|.-+|+++...+- ....++|+|.|. ++++||+.. +..+.++. ....+.+
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~-------t~k~wdlS~-g~LLlti~-fp~si~a 222 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR-------TIKLWDLSL-GVLLLTIT-FPSSIKA 222 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc-------eEEEEEecc-ceeeEEEe-cCCccee
Confidence 63 23567888899999999999872 246788888554 599999997 66666665 5678999
Q ss_pred EEecCC-CeEEEeeCCCcEEEEEcCCC----------------cceeeeeCCCC--ceeEEEEeecCCEEEEEeCCCcEE
Q 042883 478 VKFLSN-NELASASTDSSLRLWDVKEN----------------LPLHTFRGHTN--EKNFVGLTVNNEYIACGSETNEVF 538 (597)
Q Consensus 478 v~~~~~-~~l~s~~~d~~v~iwd~~~~----------------~~~~~~~~~~~--~v~~v~~s~~g~~l~~~~~d~~i~ 538 (597)
++.+|. ..+++|+.+|.|.+.++... ..+..+.||.+ .|++++++-||..|++|+.||.|.
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 999999 88999999999999887542 23455678888 999999999999999999999999
Q ss_pred EEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 539 VYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
|||+.+.+.+.++... .++|+.+.+.|
T Consensus 303 vWdi~S~Q~iRtl~~~-----------kgpVtnL~i~~ 329 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQTS-----------KGPVTNLQINP 329 (476)
T ss_pred EEecchHHHHHHHhhh-----------ccccceeEeec
Confidence 9999998888877621 66788887755
No 121
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=7.5e-23 Score=187.84 Aligned_cols=250 Identities=20% Similarity=0.286 Sum_probs=190.7
Q ss_pred CCCCcEEEEEEcCCC--CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 327 HAANIISSIEFDRDD--ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~--~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
-+.++|++++|+|.. +++|+|...|.|-+||+.+. ..+........+|..+|.++.|+|.+...+++.+.||+|+
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~---~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ---EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCC---CCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 378999999999953 58889999999999999633 1122334556678899999999998899999999999999
Q ss_pred EEeCCCCee--eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 405 IWDVTTSQS--VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 405 iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
+-|+.++.. +.........+.++.|+. +...++.+..- |...+||+++++.....+.-|...|.+|+++|
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~-------G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNV-------GNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecc-------cceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 999987643 333333456778889987 44444444432 24899999997777777778999999999999
Q ss_pred C--CeEEEeeCCCcEEEEEcCCC--c--ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc----CCccccccc
Q 042883 483 N--NELASASTDSSLRLWDVKEN--L--PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA----ISKPAASHR 552 (597)
Q Consensus 483 ~--~~l~s~~~d~~v~iwd~~~~--~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~----~~~~~~~~~ 552 (597)
- .+|+|+|.|++++|||+|.- + ++.....|...|.+..|||+|..|++.+.|..|+|||.. .-.+..++.
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 8 67999999999999999872 2 233445799999999999998779999999999999973 233333333
Q ss_pred cCCCCCCCcCcCCCcc--eEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 553 FGSDADHVDDDMGSYF--ISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~--i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
... .+..+ +....|.|+..+|++|..-..|-|+|-
T Consensus 413 Hn~--------~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 413 HNN--------RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred ccC--------cccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 221 11222 334579999999999988777888763
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.2e-22 Score=183.86 Aligned_cols=246 Identities=16% Similarity=0.232 Sum_probs=184.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
..+.|++|.|+|....+++++.||+++||.+++..+.. .....-...+|.+..|.|++...+++++....+++||
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----heeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 45789999999999999999999999999998762221 1111223578999999995555899999999999999
Q ss_pred CCCCeeee-------------EE-----------ee--------------------ccceeEEEEeCCCCCceEEeecCC
Q 042883 408 VTTSQSVM-------------EY-----------EE--------------------HEKRAWSVDFSCTEPSMLVSGSDD 443 (597)
Q Consensus 408 ~~~~~~~~-------------~~-----------~~--------------------~~~~v~~~~~~~~~~~~l~s~~~d 443 (597)
+.+.+... .| .| -.+.|.+++|+. ++..|++++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~-- 363 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASG-- 363 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEc--
Confidence 97653211 11 01 124566667765 444444443
Q ss_pred CcccCCCCeEEEEEccCCCcceeeeccCCCce--EEEEecCC-CeEEEeeCCCcEEEEEcCC------CcceeeeeCCCC
Q 042883 444 CKVGSADHHIHYYDLRNISQPLHVFNGHKKAV--SYVKFLSN-NELASASTDSSLRLWDVKE------NLPLHTFRGHTN 514 (597)
Q Consensus 444 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v--~~v~~~~~-~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~ 514 (597)
.+|.|++||++. ...+..+.. .+.| ++++.+++ .+|++||..|.|.|||..+ .+++..+..-..
T Consensus 364 -----~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 364 -----GTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred -----CCceEEEEecCC-cceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 356799999998 567777652 2333 45666677 7899999999999999654 578888877788
Q ss_pred ceeEEEEeecCCEEEEEeC--CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEE
Q 042883 515 EKNFVGLTVNNEYIACGSE--TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~i 592 (597)
.|+++.|++|+.+|+.++. +..+++..+.+......++... ..-+.|++++|+|.|.+|+.|..+|.|.+
T Consensus 437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--------~~vg~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--------TKVGHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--------CcccceEEEEecCCCceEEeecCCCceee
Confidence 8999999999999988765 6789999887766655554332 11556999999999999999999999999
Q ss_pred EEec
Q 042883 593 LVLA 596 (597)
Q Consensus 593 wd~~ 596 (597)
|.+.
T Consensus 509 ~kL~ 512 (514)
T KOG2055|consen 509 FKLH 512 (514)
T ss_pred Eeec
Confidence 9873
No 123
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=7.7e-23 Score=197.20 Aligned_cols=245 Identities=18% Similarity=0.306 Sum_probs=202.9
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC--CCCEEEEeeCCCcE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY--TKNLIASSDYDGIV 403 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~--~~~~l~s~~~dg~i 403 (597)
.+....|++++.+|+|++||+|..-|.++||++... ........|...|.|+.|+.. ...+|++++.|.-|
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLI 528 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhh-------hhhhheecccceeEEEeecCchhhhHhhhhccCCceE
Confidence 356678999999999999999999999999999876 344455578999999999852 25689999999999
Q ss_pred EEEeCCC-CeeeeEEeeccceeEEEEeCCCCC-ceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC-----CCceE
Q 042883 404 TIWDVTT-SQSVMEYEEHEKRAWSVDFSCTEP-SMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH-----KKAVS 476 (597)
Q Consensus 404 ~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~ 476 (597)
.|||+.. ..+++++.+|.+.|+++.|.-.+. ..++++|.|+. | +|+..........+..| ...++
T Consensus 529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks-------i-mFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS-------I-MFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh-------h-heehhccccCceeccccccccccceEE
Confidence 9999854 467888999999999999987443 56788887765 3 44443211122222222 25689
Q ss_pred EEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeC---CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 477 YVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRG---HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 477 ~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
.|++.|. +++++++.|..|+|||+.+++..+.|++ |.+....+..+|.|.||++...|.++.+||.-+|+.+..+.
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 9999999 9999999999999999999999999974 55667789999999999999999999999999999988775
Q ss_pred cCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|+++.|.+|-+.|++.+.||.|.||.+.
T Consensus 681 -----------GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 681 -----------GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred -----------CcchheeeeeecccchhheeecCCceEEEEECc
Confidence 579999999999999999999999999999874
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.9e-23 Score=191.51 Aligned_cols=239 Identities=14% Similarity=0.174 Sum_probs=199.2
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-.+.|+++.+.|||+.|++|+.-.+|.|||+....... ........-..++++.+| +.++.+++..||.|.|||
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri-----kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI-----KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWD 537 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcch-----hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEE
Confidence 46788999999999999999999999999998761111 111112234577889999 788999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l 486 (597)
+.+...++.|.+|.+.+.+|.+++ ++..|-||+-|. +|+-||++.+.+ +... ...+.|.++.++|. .++
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDn-------tvRcWDlregrq-lqqh-dF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDN-------TVRCWDLREGRQ-LQQH-DFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred cccceeeecccCCCCCceeEEecC-CCceeecCCCcc-------ceeehhhhhhhh-hhhh-hhhhhheecccCCCccce
Confidence 999999999999999999999998 899999998554 599999998433 3222 14578999999999 889
Q ss_pred EEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCC
Q 042883 487 ASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGS 566 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 566 (597)
++|-.++.+.|.... +...+.+.-|.+-|.++.|.+.|+++++.|.|+.+-.|...-|..+...+. .
T Consensus 608 avGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE------------~ 674 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE------------S 674 (705)
T ss_pred eeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc------------c
Confidence 999999998888765 444566777899999999999999999999999999999888877655543 7
Q ss_pred cceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 567 YFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 567 ~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
..|.++..+.|.+||+||+.|....||.+
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999999999999999986
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=176.89 Aligned_cols=244 Identities=14% Similarity=0.300 Sum_probs=187.8
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS 411 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 411 (597)
..|+.|++.|.+||+|..||.|.|||+.+. .......+|..+|++++|++ +|..|++++.|..|.+||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-------chhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCC
Confidence 779999999999999999999999999987 23334557889999999999 8999999999999999999999
Q ss_pred eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------------------cCCCCe
Q 042883 412 QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---------------------------------------GSADHH 452 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---------------------------------------~~~d~~ 452 (597)
.+++.+. ..++|+...|+|.+.+.+++.--+... |...|.
T Consensus 98 s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 98 SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 8888774 567788888887544433322111111 667778
Q ss_pred EEEEEccCCCcceeeeccCC-CceEEEEecCC-CeEEEeeCCCcEEEEEcCC-------Cc--ceeeeeC--CCCceeEE
Q 042883 453 IHYYDLRNISQPLHVFNGHK-KAVSYVKFLSN-NELASASTDSSLRLWDVKE-------NL--PLHTFRG--HTNEKNFV 519 (597)
Q Consensus 453 i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~-------~~--~~~~~~~--~~~~v~~v 519 (597)
+.+||..+ .+.+..++-.. ..|..+-++.. ..|+..+.|..|+.|+++. +. +.+.+.. ..-.-.++
T Consensus 177 llv~~a~t-~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 177 LLVYDAET-LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEEecch-heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99999887 67777776554 67888888887 7789999999999999863 11 1122221 11223578
Q ss_pred EEeecCCEEEEEeC-CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 520 GLTVNNEYIACGSE-TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 520 ~~s~~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|+.+|.|+++|+. ...++||....|..+..+.... .....+|.|+|-...+++- ..|.|+||.+.
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k----------gE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK----------GEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeeeecCCc----------hhheeecccccceeeeeec-cCCceEEEEee
Confidence 99999999988764 5789999999999888775331 4568899999998888887 67899999863
No 126
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=5.6e-23 Score=175.21 Aligned_cols=201 Identities=15% Similarity=0.278 Sum_probs=165.3
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCC
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~ 451 (597)
..+|...+.+|+|+. +|..+++|+.|+++.+|++........ ..+|.+.|-.++|+|..+..|++++.|.+
T Consensus 16 ~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~------ 88 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT------ 88 (313)
T ss_pred hhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce------
Confidence 345778899999998 899999999999999999987754433 45789999999999989999999986555
Q ss_pred eEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCC---------------------------
Q 042883 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKEN--------------------------- 503 (597)
Q Consensus 452 ~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~--------------------------- 503 (597)
|++||++. +++........+. ..+.|+|+ +++++++.|..|.+.|.++.
T Consensus 89 -ir~wd~r~-~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 89 -IRIWDIRS-GKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred -EEEEEecc-CcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence 99999998 7777776644444 45677888 88999999988888887642
Q ss_pred --------------cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcce
Q 042883 504 --------------LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI 569 (597)
Q Consensus 504 --------------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i 569 (597)
+++.+++.|.....+|.|+|+|+|+|+|+.|-.+.+||+...-....+.. +..+|
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-----------ldwpV 234 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-----------LDWPV 234 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----------ccCce
Confidence 35566678888888999999999999999999999999877655555542 38899
Q ss_pred EEEEEccCCCeEEEecCcccEEEEEe
Q 042883 570 SAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 570 ~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
..+.|+-+|++||+|+.|..|-|=++
T Consensus 235 RTlSFS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 235 RTLSFSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred EEEEeccCcceeeccCccceEEeEec
Confidence 99999999999999999988755433
No 127
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=3.8e-23 Score=196.74 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=117.0
Q ss_pred cCCCCeEEEEEccCCCcceee-ecc--CCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCC-------cceeeeeCCCC
Q 042883 447 GSADHHIHYYDLRNISQPLHV-FNG--HKKAVSYVKFLSN--NELASASTDSSLRLWDVKEN-------LPLHTFRGHTN 514 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~~~~~-~~~--~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~-------~~~~~~~~~~~ 514 (597)
.+..|.|-||+++.+++.-.. +.+ ....|+.+.|.|- ..|++++.||.|++|.+..+ .+-..+.+|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 566788999999876654322 221 4567999999996 78999999999999998653 45667889999
Q ss_pred ceeEEEEeec-CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 515 EKNFVGLTVN-NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 515 ~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
.|+++.|+|- ...|++++.|.+|++||+.+++....+. +|...|.+++|+|+|+.+++.+.||+|+||
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-----------gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy 747 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-----------GHTDQIFGIAWSPDGRRIATVCKDGTLRVY 747 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-----------cCcCceeEEEECCCCcceeeeecCceEEEe
Confidence 9999999996 5688999999999999999988877665 579999999999999999999999999999
Q ss_pred Eec
Q 042883 594 VLA 596 (597)
Q Consensus 594 d~~ 596 (597)
+..
T Consensus 748 ~Pr 750 (1012)
T KOG1445|consen 748 EPR 750 (1012)
T ss_pred CCC
Confidence 854
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=5.7e-22 Score=172.69 Aligned_cols=228 Identities=14% Similarity=0.241 Sum_probs=182.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCC--EEEEeeCCCcE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKN--LIASSDYDGIV 403 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~--~l~s~~~dg~i 403 (597)
..|.++|.+++|+.||..+++|+.|+.+++||+.++ .......|..+|..+.|-+ ..+ .|++|++|.+|
T Consensus 69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--------Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTl 139 (347)
T KOG0647|consen 69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--------QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTL 139 (347)
T ss_pred hccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--------CeeeeeecccceeEEEEec-CCCcceeEecccccce
Confidence 359999999999999999999999999999999987 6667778999999999987 444 89999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-CCCceEEEEecC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-HKKAVSYVKFLS 482 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~ 482 (597)
+.||++...++.++. -.+.++++..-. .+++.+. .++.|.+|+++++....+.... -.-.+.+|+..+
T Consensus 140 KfWD~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVat-------a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~ 208 (347)
T KOG0647|consen 140 KFWDTRSSNPVATLQ-LPERVYAADVLY---PMAVVAT-------AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ 208 (347)
T ss_pred eecccCCCCeeeeee-ccceeeehhccC---ceeEEEe-------cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe
Confidence 999999988888874 467788888753 4555554 3555999999864333332221 234678888888
Q ss_pred C-CeEEEeeCCCcEEEEEcCCC--cceeeeeCCCC---------ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccc
Q 042883 483 N-NELASASTDSSLRLWDVKEN--LPLHTFRGHTN---------EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAS 550 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~---------~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 550 (597)
+ ...+.|+-.|.+.|..+..+ +.-++|+-|.. .|++|+|+|.-..|+++|.||++.+||......+..
T Consensus 209 d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 209 DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 8 55699999999999998876 44556665542 467899999988999999999999999887766665
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
.. .|..+|++.+|+.+|.+++-+
T Consensus 289 s~-----------~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 289 SE-----------THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cC-----------cCCCccceeEecCCCCEEEEE
Confidence 54 258999999999999987653
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.3e-23 Score=173.67 Aligned_cols=208 Identities=17% Similarity=0.242 Sum_probs=163.9
Q ss_pred cccCCCCcEEEEEEcC--CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC-CCEEEEeeCC
Q 042883 324 DLFHAANIISSIEFDR--DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT-KNLIASSDYD 400 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~--~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~-~~~l~s~~~d 400 (597)
.+.||.++|+.++|.. -|.+||++++||.|.||.-.++ ..........|...|++|+|.|.+ +-.|++++.|
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-----~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-----RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-----chhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 4669999999999976 7999999999999999998776 223334445688999999999954 5688899999
Q ss_pred CcEEEEeCCCC---eeeeEEeeccceeEEEEeCCCC--C-----------ceEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 401 GIVTIWDVTTS---QSVMEYEEHEKRAWSVDFSCTE--P-----------SMLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 401 g~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~--~-----------~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
|.|.|.+.++. ........|.-.|+++.|.|.. + ..|++|+ .|+.|+||+..+..-.
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-------cDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-------CDNLVKIWKFDSDSWK 198 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC-------CccceeeeecCCcchh
Confidence 99999988654 2234456799999999999841 2 4577776 4566999999874322
Q ss_pred -eeeeccCCCceEEEEecCC-C----eEEEeeCCCcEEEEEcCCC--c-ceeeeeCCCCceeEEEEeecCCEEEEEeCCC
Q 042883 465 -LHVFNGHKKAVSYVKFLSN-N----ELASASTDSSLRLWDVKEN--L-PLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535 (597)
Q Consensus 465 -~~~~~~~~~~v~~v~~~~~-~----~l~s~~~d~~v~iwd~~~~--~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 535 (597)
-.++.+|.+.|..++|.|. + .|+++|.||+|.||-.+.. . ....+......++.++||..|++|++++.|+
T Consensus 199 ~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 199 LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 3448899999999999998 3 4999999999999987631 1 1122233567899999999999999999999
Q ss_pred cEEEEEcc
Q 042883 536 EVFVYHKA 543 (597)
Q Consensus 536 ~i~iwd~~ 543 (597)
.|.+|.-.
T Consensus 279 kvtlwke~ 286 (299)
T KOG1332|consen 279 KVTLWKEN 286 (299)
T ss_pred EEEEEEeC
Confidence 99999743
No 130
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=3.5e-23 Score=192.47 Aligned_cols=207 Identities=18% Similarity=0.251 Sum_probs=156.0
Q ss_pred ceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe----eeeEEe-eccceeEEEEeCCCCCceEEeecCCCcc
Q 042883 372 MVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ----SVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKV 446 (597)
Q Consensus 372 ~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~ 446 (597)
+...+|...|.++++.| .|..|++|+.|-.|++||+.... ....+. .....|.++.|++.++.+|+..+
T Consensus 161 i~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg----- 234 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG----- 234 (641)
T ss_pred EeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec-----
Confidence 44556778899999999 89999999999999999986532 122221 23457999999996666665554
Q ss_pred cCCCCeEEEEEccCCCcc------------eeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCc-ceeeee-
Q 042883 447 GSADHHIHYYDLRNISQP------------LHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENL-PLHTFR- 510 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~~------------~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~-~~~~~~- 510 (597)
....+|+|-.. ... +...+||...+++..|+|. +.|++++.||+++|||+.+.+ .+..+.
T Consensus 235 ---~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 235 ---SAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred ---CcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 33478888653 211 2223689999999999999 779999999999999998743 223332
Q ss_pred ----CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCc--ceEEEEEccCCCeEEEe
Q 042883 511 ----GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSY--FISAVCWKSDSPTMLTA 584 (597)
Q Consensus 511 ----~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~v~~~~~~~~l~s~ 584 (597)
+..-+++.++|++||++||+|..||.|.+|+......-..+... ..|.. .|++|.||++|++|++=
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--------~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--------DAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--------eccCCCCceeEEEeccccchhhhc
Confidence 23346789999999999999999999999998544332222221 23444 89999999999999999
Q ss_pred cCcccEEEEEec
Q 042883 585 NRKGAIKVLVLA 596 (597)
Q Consensus 585 ~~dg~v~iwd~~ 596 (597)
|.|+++++|||+
T Consensus 383 g~D~tLKvWDLr 394 (641)
T KOG0772|consen 383 GFDDTLKVWDLR 394 (641)
T ss_pred cCCCceeeeecc
Confidence 999999999986
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.8e-24 Score=206.73 Aligned_cols=220 Identities=18% Similarity=0.375 Sum_probs=190.7
Q ss_pred EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccce
Q 042883 344 FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKR 423 (597)
Q Consensus 344 l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 423 (597)
++.+...-.+++|+.... ..|...+.++..-. .+..+++|+.|..+-+|.+.....+..+.+|..+
T Consensus 7 ~m~~~~~t~Lr~~~~~~~-------------~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hesp 72 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTREF-------------VAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESP 72 (825)
T ss_pred cceeeeeeccccccchhh-------------hhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheeeccCCc
Confidence 344444556677776533 23566777777643 6789999999999999998877777789999999
Q ss_pred eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC
Q 042883 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE 502 (597)
Q Consensus 424 v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~ 502 (597)
|.++.|++ ...++++|+.+|+ |++||+.. .+.++++.+|...+.+|.|+|- .++++|+.|+.+.+||++.
T Consensus 73 IeSl~f~~-~E~Llaagsasgt-------iK~wDlee-Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 73 IESLTFDT-SERLLAAGSASGT-------IKVWDLEE-AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred ceeeecCc-chhhhcccccCCc-------eeeeehhh-hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc
Confidence 99999998 7788888886555 99999997 7889999999999999999999 6678899999999999998
Q ss_pred CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE
Q 042883 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
..+.+.+.+|...+..+.|+|+|++++.|+.|..++|||...|+.+..+. .|...+.++.|+|..-+++
T Consensus 144 ~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~-----------~~e~~v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 144 KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK-----------SHEGKVQSLEFHPLEVLLA 212 (825)
T ss_pred cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc-----------cccccccccccCchhhhhc
Confidence 88999999999999999999999999999999999999999999988776 3688999999999999999
Q ss_pred EecCcccEEEEEecC
Q 042883 583 TANRKGAIKVLVLAA 597 (597)
Q Consensus 583 s~~~dg~v~iwd~~~ 597 (597)
+|+.|++|++||+.+
T Consensus 213 ~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLET 227 (825)
T ss_pred cCCCCceeeeeccce
Confidence 999999999999863
No 132
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-21 Score=170.91 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=189.8
Q ss_pred CCCcEEEEEEcCCCCEEEEeeC--CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 328 AANIISSIEFDRDDELFASAGV--SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
+.-.|..+.|......++.++. |.+|+..++.+. +......+|...|..++.+| .++.+++++.|++|++
T Consensus 55 kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-------kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrL 126 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-------KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRL 126 (311)
T ss_pred ccccccEEEEecCCceEEEccCCCCCceEEEEeecC-------ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEe
Confidence 3445777788776666666665 889999999887 45556668999999999999 6799999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC-Ccceeeecc---CCCceEEEEec
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI-SQPLHVFNG---HKKAVSYVKFL 481 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-~~~~~~~~~---~~~~v~~v~~~ 481 (597)
||++..++...+..... ..++|.| .|-++|++.... .|++||+|.. ..+..++.- -....+.|.|+
T Consensus 127 WDlR~~~cqg~l~~~~~--pi~AfDp-~GLifA~~~~~~-------~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS 196 (311)
T KOG1446|consen 127 WDLRVKKCQGLLNLSGR--PIAAFDP-EGLIFALANGSE-------LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS 196 (311)
T ss_pred eEecCCCCceEEecCCC--cceeECC-CCcEEEEecCCC-------eEEEEEecccCCCCceeEccCCCCccceeeeEEc
Confidence 99998887776654333 3468999 889998887433 5999999975 345555543 35678999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCce---eEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCC
Q 042883 482 SN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEK---NFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDA 557 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v---~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 557 (597)
|+ ..++.+...+.+++.|.-+|..+.++.++.+.- -..+|+|||++|++|+.||+|++|++.++..+..+...
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--- 273 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP--- 273 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC---
Confidence 99 568888889999999999999999988765532 46889999999999999999999999999998877643
Q ss_pred CCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 558 DHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+.+++.++.|+|....+++++. .+-+|=
T Consensus 274 -------~~~~~~~~~fnP~~~mf~sa~s--~l~fw~ 301 (311)
T KOG1446|consen 274 -------NGGPVSCVRFNPRYAMFVSASS--NLVFWL 301 (311)
T ss_pred -------CCCCccccccCCceeeeeecCc--eEEEEe
Confidence 3778999999998877777654 566774
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.1e-21 Score=184.91 Aligned_cols=241 Identities=20% Similarity=0.300 Sum_probs=194.4
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-.+.|.+++|+.+.+.||.+-.+|.|.||++... -...+....+....|-+++|.+ +..|++.+.+|.|.-||
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-----w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-----WFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWD 96 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC-----ceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEe
Confidence 3568999999999999999999999999999875 1122333445678899999995 66788888899999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce--eeeccCCCceEEEEecCCC-
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL--HVFNGHKKAVSYVKFLSNN- 484 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~v~~v~~~~~~- 484 (597)
+.+++....+....+.||+++.+| .+..++.|++||. +++++... +... ..+....+.|.+++|+|++
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGv-------l~~~s~~p-~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGV-------LYDFSIGP-DKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCC-ccceEEeecCCce-------EEEEecCC-ceEEEEeecccccceEEEEEecCCcc
Confidence 999999999998999999999999 7788888886664 77777664 3222 1233345899999999994
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeC--------CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRG--------HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~--------~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
.+++|+.||.|++||..++..++.... ..--|+++.|-.++ .|++|...|.|.+||...+..+..+..
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~--- 243 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC--- 243 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh---
Confidence 599999999999999999877663221 22245666666454 688999999999999999999887764
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|.+.|.+++.++++.+++++|.|+.|.-|...
T Consensus 244 --------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 244 --------HDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred --------hhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 58899999999999999999999999877654
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.4e-22 Score=172.59 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=169.6
Q ss_pred cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe----------eeeE-----EeeccceeEEEEeCCCCCceEEee
Q 042883 376 PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ----------SVME-----YEEHEKRAWSVDFSCTEPSMLVSG 440 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~v~~~~~~~~~~~~l~s~ 440 (597)
.|.+.|.++...+..+.++++|+.||.|.+||++.-. .... -.+|.-.|.++.|-|.|..+|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5678899999999889999999999999999996532 1111 135778899999999999999998
Q ss_pred cCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC----CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCce
Q 042883 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN----NELASASTDSSLRLWDVKENLPLHTFRGHTNEK 516 (597)
Q Consensus 441 ~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 516 (597)
+.| .++++||.++ .+....|+ -.+.|++-+|+|- -.+++|..|-.|++-|+.+|...+++.||...|
T Consensus 121 SFD-------htlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 121 SFD-------HTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred ccc-------ceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 855 4599999997 55556665 5677888888886 347788888899999999999999999999999
Q ss_pred eEEEEeecCCE-EEEEeCCCcEEEEEccCC-ccccccccCC--CCC-CCcCcCCCcceEEEEEccCCCeEEEecCcccEE
Q 042883 517 NFVGLTVNNEY-IACGSETNEVFVYHKAIS-KPAASHRFGS--DAD-HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIK 591 (597)
Q Consensus 517 ~~v~~s~~g~~-l~~~~~d~~i~iwd~~~~-~~~~~~~~~~--~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~ 591 (597)
.+|.|+|...+ |++|+.||.|++||++.. .....+.... .+. ......|.+.|++++|+.+|.++++.+.|..++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 99999998765 678999999999999754 2222222211 111 112346899999999999999999999999999
Q ss_pred EEEec
Q 042883 592 VLVLA 596 (597)
Q Consensus 592 iwd~~ 596 (597)
+|+..
T Consensus 272 ~wn~~ 276 (397)
T KOG4283|consen 272 VWNME 276 (397)
T ss_pred Eeecc
Confidence 99975
No 135
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=168.56 Aligned_cols=263 Identities=19% Similarity=0.346 Sum_probs=190.1
Q ss_pred ccccCCCCcEEEEEEcC-CCCEEEEeeCC-------CcEEEEecccCccCCc--cCCCCc-eEecCCCceeEEEEecCCC
Q 042883 323 GDLFHAANIISSIEFDR-DDELFASAGVS-------RRIKIFEFSSVVNEPR--DVHYPM-VEMPTRSKLSCLSWNKYTK 391 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~-~~~~l~t~~~d-------~~v~iw~~~~~~~~~~--~~~~~~-~~~~~~~~i~~v~~~~~~~ 391 (597)
..+++|.+.|+.++-+| +.+.|+|+..+ ..+-||.+........ ...... ....+.+.|.||.|.| ++
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P-ns 135 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP-NS 135 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC-CC
Confidence 34568999999999999 45566665432 2477999876532211 011111 1112446899999999 66
Q ss_pred CEEEEeeCCCcEEEEeCCCCee-eeEEe-----eccceeEEEEeCC-CCCceEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 392 NLIASSDYDGIVTIWDVTTSQS-VMEYE-----EHEKRAWSVDFSC-TEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 392 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
..+++-. |..|.+|++..+.. +..+. ++....++-+|+| .+++.+++.+ |+++..||+|+..+.
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--------d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--------DSTLQFWDLRTMKKN 206 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--------CCcEEEEEccchhhh
Confidence 6676655 88999999987655 33332 3556788899999 6778888776 667999999986666
Q ss_pred eeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEE
Q 042883 465 LHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVY 540 (597)
Q Consensus 465 ~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iw 540 (597)
..+-.+|...|..+.|+|+ .+|++|+.||.|+|||.|. ..+++.+.+|...|++|.|+|. ..+|++||.|..|.+|
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLS 286 (370)
T ss_pred cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEE
Confidence 6666789999999999999 6699999999999999987 5688999999999999999996 6688999999999999
Q ss_pred EccCCccccccccCCCCC------------------CCcCcCCCcceEEEEEccCCCeE-EEecCcccEEEEEe
Q 042883 541 HKAISKPAASHRFGSDAD------------------HVDDDMGSYFISAVCWKSDSPTM-LTANRKGAIKVLVL 595 (597)
Q Consensus 541 d~~~~~~~~~~~~~~~~~------------------~~~~~~h~~~i~~v~~~~~~~~l-~s~~~dg~v~iwd~ 595 (597)
....-..-..+.++.... -..-..|...|.+++|+.-.+++ |+-+.||.+.|=.+
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 865422111111111000 00112479999999999877775 55799999987654
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.4e-21 Score=188.36 Aligned_cols=262 Identities=18% Similarity=0.222 Sum_probs=198.2
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.||.+.|+++.|+|.+..|++++.|.++.+|...............-...+.....++.-|+| +++.+++-+..|..++
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEE
Confidence 489999999999999999999999999999987764211111111111113345688999999 6788999899999999
Q ss_pred EeCCCC---eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------------------------------
Q 042883 406 WDVTTS---QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------------ 446 (597)
Q Consensus 406 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------------ 446 (597)
|..... .....+.||.+.|.+++|+| .|.++++.|.|-+.
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 983321 23344678999999999999 88899999999876
Q ss_pred ---cCCCCeEEEEEccC-------------------------------------------CC------------------
Q 042883 447 ---GSADHHIHYYDLRN-------------------------------------------IS------------------ 462 (597)
Q Consensus 447 ---~~~d~~i~i~d~~~-------------------------------------------~~------------------ 462 (597)
|....-+++|+... ++
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 22222233333210 00
Q ss_pred --------------cceeeeccCCCceEEEEecCC-CeEEEeeCC-----CcEEEEEcCCCcceeeeeCCCCceeEEEEe
Q 042883 463 --------------QPLHVFNGHKKAVSYVKFLSN-NELASASTD-----SSLRLWDVKENLPLHTFRGHTNEKNFVGLT 522 (597)
Q Consensus 463 --------------~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s 522 (597)
..+..+.||...|++++.+|+ +.++++... ..|++|+..+...+..+.+|.-.|+.++||
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 002334689999999999999 777777644 349999999999999999999999999999
Q ss_pred ecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 523 VNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 523 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|||++|++.+.|.++.+|....... ..+.+. ....|..-|++..|+|++.+|+|++.|.+|+||...
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~-~e~~fa------~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIK-DEFRFA------CLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccc-hhhhhc------cccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 9999999999999999999743322 112221 134579999999999999999999999999999864
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.3e-20 Score=182.56 Aligned_cols=236 Identities=15% Similarity=0.193 Sum_probs=168.9
Q ss_pred cEEEEEEcCCCCEE-EEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCCCcEEEEeC
Q 042883 331 IISSIEFDRDDELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDGIVTIWDV 408 (597)
Q Consensus 331 ~v~~i~~~~~~~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg~i~iwd~ 408 (597)
.+.+++|+|++..+ ++++.++.|++||+.++ ...........+..++|+| +++.+ ++++.++.|++||+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--------EVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCC--------cEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 46789999999876 56677899999998875 1111112223356789999 55555 45566899999999
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEE
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA 487 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~ 487 (597)
.++..+..+.. ...+.+++|+| ++.++++++.++. .+.+||..+ ......+. ....+..++|+|+ ..|+
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~------~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 103 ETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTN------MAHFIDTKT-YEIVDNVL-VDQRPRFAEFTADGKELW 172 (300)
T ss_pred CCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCC------eEEEEeCCC-CeEEEEEE-cCCCccEEEECCCCCEEE
Confidence 98877776643 34578899999 7888887765432 377889876 44443332 2334578999999 5554
Q ss_pred -EeeCCCcEEEEEcCCCcceeeeeCCC-----C--ceeEEEEeecCCEEEE-EeCCCcEEEEEccCCccccccccCCCCC
Q 042883 488 -SASTDSSLRLWDVKENLPLHTFRGHT-----N--EKNFVGLTVNNEYIAC-GSETNEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 488 -s~~~d~~v~iwd~~~~~~~~~~~~~~-----~--~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
++..++.|++||+.+++.+..+..+. . ....++|+|+|+++++ .+.++.|.+||..+++.+.....
T Consensus 173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----- 247 (300)
T TIGR03866 173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV----- 247 (300)
T ss_pred EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-----
Confidence 44568999999999988776654221 1 2346889999998654 45567899999988876654432
Q ss_pred CCcCcCCCcceEEEEEccCCCeEEEe-cCcccEEEEEecC
Q 042883 559 HVDDDMGSYFISAVCWKSDSPTMLTA-NRKGAIKVLVLAA 597 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~~l~s~-~~dg~v~iwd~~~ 597 (597)
...+.+++|+|+|.+|+++ +.+|.|+|||+.+
T Consensus 248 -------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 248 -------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred -------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 3468899999999999886 5699999999864
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2e-21 Score=185.59 Aligned_cols=250 Identities=16% Similarity=0.267 Sum_probs=181.1
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
....|.+.|..+.|-|....|++++.|.++++||+.+. .........+|...|-+++|.|.+...|++|+.||.|
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-----~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-----RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI 169 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-----eeecceeecccccccchhhhccCCCcceeeccCCCcE
Confidence 34569999999999997678999999999999999886 1112224678999999999999999999999999999
Q ss_pred EEEeCCCCe--------------------e-------eeEEeecc----ceeEEEEeCCCCCceEEeecCCCcccCCCCe
Q 042883 404 TIWDVTTSQ--------------------S-------VMEYEEHE----KRAWSVDFSCTEPSMLVSGSDDCKVGSADHH 452 (597)
Q Consensus 404 ~iwd~~~~~--------------------~-------~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~ 452 (597)
.|||++-.. . +..-..+. +.|+.+.|- |...||++|. .|+.
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga------~D~~ 241 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGA------ADST 241 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccC------CCcc
Confidence 999986432 0 00011122 235556554 7888888874 3666
Q ss_pred EEEEEccCCCc-----ceee--eccC---CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCC--cceeeeeCCCCce--e
Q 042883 453 IHYYDLRNISQ-----PLHV--FNGH---KKAVSYVKFLSN-NELASASTDSSLRLWDVKEN--LPLHTFRGHTNEK--N 517 (597)
Q Consensus 453 i~i~d~~~~~~-----~~~~--~~~~---~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~v--~ 517 (597)
|+|||++.... +... +..| ...+.++..... .+|++...|+.|++||+.+- .++..+.++...- .
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee
Confidence 99999996322 1222 2223 235666666555 66766667999999999863 3455555543321 1
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEec
Q 042883 518 FVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 518 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~ 596 (597)
.-..+||+.++++|+.|...++|.+.+...-..... +|...|+.|+|.|.. .-+++++.|..++||++.
T Consensus 322 ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~----------Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 322 KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL----------GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred eeecCCCCceEeccCCCcceeeeeecCccCChhhhh----------CcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 234689999999999999999999987665444443 468899999998754 347788999999999984
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.4e-22 Score=181.20 Aligned_cols=209 Identities=19% Similarity=0.353 Sum_probs=167.6
Q ss_pred cCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEe-cCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 326 FHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEM-PTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+|++.|.+++|+.+ ...||+|+.|.+|++||+.++ .+...+ .|...|.+++|+|....+|++|+.|++|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 479999999999985 468899999999999999998 333333 4788999999999999999999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
.++|.+........-...+.|-.++|.|.....++++.+||+ ++-+|+|++++++.++++|.+.|.++.+++.
T Consensus 312 ~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-------v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 312 ALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-------VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQ 384 (463)
T ss_pred EeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-------EEeeecCCCCCceeEEEeccCCcceEEecCC
Confidence 999998533222222346789999999988888888876555 9999999999999999999999999999988
Q ss_pred --CeEEEeeCCCcEEEEEcCCCcc--eeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCcccc
Q 042883 484 --NELASASTDSSLRLWDVKENLP--LHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 484 --~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
+.+++++.|+.|++|++....+ +....-.-+...|.++.|+- .+++.||..+.++|||+.+..++.
T Consensus 385 ~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 385 TPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 8899999999999999875433 22111112335567777774 467788888899999998776654
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=186.16 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=201.7
Q ss_pred cCCCCcEEEEEEcCC-----------CCEEEEeeCCCcEEEEecccCccCCc----------------c-----------
Q 042883 326 FHAANIISSIEFDRD-----------DELFASAGVSRRIKIFEFSSVVNEPR----------------D----------- 367 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~-----------~~~l~t~~~d~~v~iw~~~~~~~~~~----------------~----------- 367 (597)
+.|...|+++.--|- ...|.|++.|++|++|++........ +
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 458888888877661 23589999999999999987421100 0
Q ss_pred ---CCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCC--CCceEEeecC
Q 042883 368 ---VHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCT--EPSMLVSGSD 442 (597)
Q Consensus 368 ---~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~ 442 (597)
.............+.+++.+| ++.+|++|..-|.++||++..-.....+..|.+.|.++.|+.. ...+|++++.
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 000011223456799999999 8999999999999999999998889999999999999999842 3478899987
Q ss_pred CCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC---CeEEEeeCCCcEEEEEcCCCcceeeeeCC-----CC
Q 042883 443 DCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN---NELASASTDSSLRLWDVKENLPLHTFRGH-----TN 514 (597)
Q Consensus 443 d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~ 514 (597)
|+. |+|||...+-.++.++.+|...|++|.|.-. ..+++++.|..|.+--.+.......+..| ..
T Consensus 525 dRl-------IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 525 DRL-------IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred Cce-------EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 666 9999998877889999999999999999766 35899999987754332221112222222 34
Q ss_pred ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 515 EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.++.++..|..+++++++.|..|+|||+.+++....++.. .+|.+....+..+|.|-||++...|.++.++|
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs--------~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS--------RDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc--------ccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 6789999999999999999999999999999999888753 34678899999999999999999999999999
Q ss_pred ecC
Q 042883 595 LAA 597 (597)
Q Consensus 595 ~~~ 597 (597)
+.+
T Consensus 670 f~s 672 (1080)
T KOG1408|consen 670 FVS 672 (1080)
T ss_pred ecc
Confidence 753
No 141
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.7e-21 Score=166.02 Aligned_cols=227 Identities=15% Similarity=0.162 Sum_probs=179.3
Q ss_pred EEEEeeCCCcEEEEecccCccCCccCCC-----CceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE
Q 042883 343 LFASAGVSRRIKIFEFSSVVNEPRDVHY-----PMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY 417 (597)
Q Consensus 343 ~l~t~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 417 (597)
.|++|++...|.=+++.-.......... ......|.++|++++.+ +.++++|+.|-+|+|||+........+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence 4677888887777776544211111111 22334688999999986 689999999999999999999999999
Q ss_pred eeccceeEEEEeCCCCC--ceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCe-EEEeeCCCc
Q 042883 418 EEHEKRAWSVDFSCTEP--SMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTDSS 494 (597)
Q Consensus 418 ~~~~~~v~~~~~~~~~~--~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~~d~~ 494 (597)
-.|.+.|+++.|.+ .. ..|++|+.||. |.+|+... -..+.++++|.+.|+.++.+|.+. -++.+.|+.
T Consensus 80 l~HagsitaL~F~~-~~S~shLlS~sdDG~-------i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~ 150 (362)
T KOG0294|consen 80 LSHAGSITALKFYP-PLSKSHLLSGSDDGH-------IIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV 150 (362)
T ss_pred eccccceEEEEecC-CcchhheeeecCCCc-------EEEEEcCC-eEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence 99999999999987 33 37888886555 99999987 688899999999999999999955 567899999
Q ss_pred EEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEE
Q 042883 495 LRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCW 574 (597)
Q Consensus 495 v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~ 574 (597)
+++||+-.|+.-+...- ....+.|.|+|.|.+++.++.+ .|-||.+.+.+....... ...+.++.|
T Consensus 151 lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~------------~~r~l~~~~ 216 (362)
T KOG0294|consen 151 LRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN------------PKRILCATF 216 (362)
T ss_pred eeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc------------cccceeeee
Confidence 99999998886665542 2233559999999988888764 589999988887776654 345777777
Q ss_pred ccCCCeEEEecCcccEEEEEec
Q 042883 575 KSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 575 ~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
. ++.+|++|+.|+.|.+||-+
T Consensus 217 l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 217 L-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred c-CCceEEEecCCceEEEeccC
Confidence 6 56789999999999999975
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=165.78 Aligned_cols=246 Identities=16% Similarity=0.236 Sum_probs=186.5
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccC------CccCCCCceEecCCCceeEEEEec------CCCCEEEEee
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNE------PRDVHYPMVEMPTRSKLSCLSWNK------YTKNLIASSD 398 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~------~~~~~~~~~~~~~~~~i~~v~~~~------~~~~~l~s~~ 398 (597)
....+.|+|||..|++-+.|..+++|++....-. ................|+..+|.+ .+.+++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4557889999999999999999999998654111 111122233444566788888863 1578999999
Q ss_pred CCCcEEEEeCCCCeeeeEEee--ccc---eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee--ec--
Q 042883 399 YDGIVTIWDVTTSQSVMEYEE--HEK---RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV--FN-- 469 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~--~~-- 469 (597)
.+.-|++||..+|+....+.+ |.. ...+++|+| ++..|++|- .+.|++||+..++..... ..
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy--------krcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY--------KRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc--------cceEEEeeccCCCCCCcchhhhhc
Confidence 999999999999988877754 322 456899999 777777664 566999999544432221 11
Q ss_pred ---cCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC-CCcEEEEEcc
Q 042883 470 ---GHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE-TNEVFVYHKA 543 (597)
Q Consensus 470 ---~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~ 543 (597)
+..+-+.+++|+|. ..++.|+....+-||.-..+.++..+.+|.+.|+.+.|.++|+.|++|.. |..|..||++
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 23567899999998 67999999999999999999999999999999999999999999999875 7789999998
Q ss_pred CCc-cccccccCCCCCCCcCcCCCc-ceEEE--EEccCCCeEEEecCcccEEEEEec
Q 042883 544 ISK-PAASHRFGSDADHVDDDMGSY-FISAV--CWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 544 ~~~-~~~~~~~~~~~~~~~~~~h~~-~i~~v--~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..+ ++..+.. |.. .-..| ...|++++|++|+.||.|++||+.
T Consensus 282 ~~~~pv~~L~r-----------hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 282 YSRDPVYALER-----------HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred hccchhhhhhh-----------hccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 654 3333321 111 22234 446899999999999999999985
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=4e-21 Score=183.55 Aligned_cols=248 Identities=21% Similarity=0.341 Sum_probs=178.4
Q ss_pred EEEEcC---CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 334 SIEFDR---DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 334 ~i~~~~---~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
+..|++ ....|+.+..||.|.++|.....-.. ..........|...|..+.|-| +...|++++.|.++++||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 366765 34678999999999999987652111 1111234456899999999999 889999999999999999999
Q ss_pred CeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc-------------------c-----
Q 042883 411 SQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ-------------------P----- 464 (597)
Q Consensus 411 ~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~-------------------~----- 464 (597)
+.++.. +.+|...|.+++|.|.+...|++|+.||. |.|||++-.+. +
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~-------illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE-------ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCc-------EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 888776 88999999999999999999999996655 99999985330 0
Q ss_pred --eeeeccCCCc----eEEEEecCCCeEEEeeC-CCcEEEEEcCCCccee--------eeeCC---CCceeEEEEeecCC
Q 042883 465 --LHVFNGHKKA----VSYVKFLSNNELASAST-DSSLRLWDVKENLPLH--------TFRGH---TNEKNFVGLTVNNE 526 (597)
Q Consensus 465 --~~~~~~~~~~----v~~v~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~--------~~~~~---~~~v~~v~~s~~g~ 526 (597)
+...+.+... |+.+.|-.+..|+++|. |+.|+|||++...... .+..| .-.+.++..+..|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 1111223333 44555555588998887 9999999999743322 22223 23566777777799
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 527 YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+|++...|+.|++|++..........+... .....-..-..+|++.+|++|+.|..+++|.++.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~-------~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGK-------LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCc-------ccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 998888899999999886543322222110 0011122234689999999999999999999863
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=187.79 Aligned_cols=228 Identities=15% Similarity=0.259 Sum_probs=185.8
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
+...|.+++.. +.+|++|+.+++|.+|.+..+ ..........-++.+++|+. +|++++.|+.|-.|++.+
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~-------~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~ 124 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG-------EEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLN 124 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCC-------CccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEe
Confidence 77788888775 458999999999999999887 22224444567899999998 899999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--------CCCceEEEE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--------HKKAVSYVK 479 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~v~~v~ 479 (597)
+.+......+++|.++|.++.|+| .+.+||+.+- ||.|++||+.. +....++.+ ....+..++
T Consensus 125 ~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~-------dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 125 LDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSC-------DGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred ccccchheeecccCCceeeeeEcC-CCCEEEEEec-------CceEEEEEccc-chhhhhcccCCccccccccceeeeee
Confidence 999999999999999999999999 8899999885 45599999987 555544432 134567899
Q ss_pred ecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeC--CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 480 FLSN-NELASASTDSSLRLWDVKENLPLHTFRG--HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
|+|+ +.|+..+.|+.|++|+..++...+.+.. +...+..+.|+|+|.|||+++.||.|.|||..+-.. ..+
T Consensus 196 W~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~--- 269 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEF--- 269 (933)
T ss_pred ecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccc---
Confidence 9999 9999999999999999999988888763 334588999999999999999999999999987221 221
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCccc
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGA 589 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~ 589 (597)
...|.+++|.|+..-+-.....|.
T Consensus 270 ---------~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 270 ---------KRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred ---------cceeEEEecCCCCCeeEEEeeccc
Confidence 567999999998876644444443
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.8e-21 Score=179.03 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=189.0
Q ss_pred EEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 332 ISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 332 v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
+.++.|+.... .+++.+.|..|++|.-... ....+.........-.||+... ...++++|+..+.|+|||++.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-----~~~Vp~~~k~~gd~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-----TPEVPRVRKLTGDNAFCVACAS-QSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCC-----CCccceeeccccchHHHHhhhh-cceeeeccCcCceeeehhhHH
Confidence 88999988664 2344456888999975543 1122333333333555666555 357899999999999999998
Q ss_pred CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC-CCceEEEEecCC--CeEE
Q 042883 411 SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH-KKAVSYVKFLSN--NELA 487 (597)
Q Consensus 411 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~~--~~l~ 487 (597)
..+.+.+++|.+.|+.+.++. ...+|++++..|. |.|..+.+ +.....|... ...|.-+.|+|. ..|.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGd-------iiih~~~t-~~~tt~f~~~sgqsvRll~ys~skr~lL~ 181 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGD-------IIIHGTKT-KQKTTTFTIDSGQSVRLLRYSPSKRFLLS 181 (673)
T ss_pred HHHhhhccCCcceeEEEEecC-CcceeEEeccCCc-------EEEEeccc-CccccceecCCCCeEEEeecccccceeeE
Confidence 777888899999999999997 7889999886554 89999887 5555556543 345668999998 5578
Q ss_pred EeeCCCcEEEEEcCCCcceeee-eCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCC
Q 042883 488 SASTDSSLRLWDVKENLPLHTF-RGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h 565 (597)
+++.+|.|.+||+....+++.+ ..|..+...|+|+|.. .+|++.|.|..|.+||....+....+.+
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y------------ 249 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY------------ 249 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee------------
Confidence 8999999999999987777665 4788999999999974 5788899999999999998888777776
Q ss_pred CcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 566 SYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..+...|+|.++|.+|++|+..|.|..||++
T Consensus 250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred cCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 6689999999999999999999999999986
No 146
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=1.9e-20 Score=162.27 Aligned_cols=246 Identities=17% Similarity=0.313 Sum_probs=185.0
Q ss_pred cCCCCcEEEEEEcCCC-----CEEEEeeCCCcEEEEecccCccCCc--cCCCCceEecCCCceeEEEEecCCCCEEEEee
Q 042883 326 FHAANIISSIEFDRDD-----ELFASAGVSRRIKIFEFSSVVNEPR--DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD 398 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~-----~~l~t~~~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~ 398 (597)
+.|.-+++.+.|.|+. ++|||. +..+++|.+........ ..........+..++++..|+..+.++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 6799999999999975 345555 44799999875311111 11111123345679999999998899999999
Q ss_pred CCCcEEEEeCCCCee---eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC--CC
Q 042883 399 YDGIVTIWDVTTSQS---VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH--KK 473 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~ 473 (597)
-|-+..|||++++.. ...+-.|...|.+|+|...+.++|++.|.||. +++||+|.-......+... ..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-------vRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-------VRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc-------EEEEEecccccceEEecCCCCCC
Confidence 999999999998633 45567899999999999756689999986555 9999999744444444432 46
Q ss_pred ceEEEEecCC--CeEEEeeCCC-cEEEEEcCC-CcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCc--
Q 042883 474 AVSYVKFLSN--NELASASTDS-SLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISK-- 546 (597)
Q Consensus 474 ~v~~v~~~~~--~~l~s~~~d~-~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~-- 546 (597)
+...++|++. +++++-..|+ .|.|.|+|. ..++..+.+|.+.|+.++|.|. +..|+++|+|..+.|||+...-
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 7889999987 7788766554 599999997 6789999999999999999997 6689999999999999987532
Q ss_pred ----cccccccCCCCCCCcCcCCCcceEEEEEcc-CCCeEEEecCcccEEEE
Q 042883 547 ----PAASHRFGSDADHVDDDMGSYFISAVCWKS-DSPTMLTANRKGAIKVL 593 (597)
Q Consensus 547 ----~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~~~dg~v~iw 593 (597)
++..+.. .+.|+.+.|++ .+.+|+.+.. +++.|.
T Consensus 324 ~~~dPilay~a------------~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 324 NGEDPILAYTA------------GGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred CCCCchhhhhc------------cceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 2222221 67899999995 5667776654 344443
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=3.6e-20 Score=163.32 Aligned_cols=252 Identities=19% Similarity=0.362 Sum_probs=188.6
Q ss_pred CCCCcEEEEEEcC-----CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC---CCCEEEEee
Q 042883 327 HAANIISSIEFDR-----DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY---TKNLIASSD 398 (597)
Q Consensus 327 ~~~~~v~~i~~~~-----~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~---~~~~l~s~~ 398 (597)
.|..+|..++|++ .-..++|++ ...+.+|...... ... .........+....+.++|.-+ ++.++|.|+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~-~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDG-GIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcc-cee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 5888999999996 234666666 5578899876551 000 0011111235677888888753 245888899
Q ss_pred CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec---cCCCce
Q 042883 399 YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN---GHKKAV 475 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v 475 (597)
.-|.|+|.|+.+++....+.+|...|+.+.+.|.+.++++++|.|.. |++|++++ ..++..|. +|.+.|
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-------vRlwnI~~-~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-------VRLWNIQT-DVCVAVFGGVEGHRDEV 184 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-------EEEEeccC-CeEEEEecccccccCcE
Confidence 99999999999999999999999999999999999999999996655 99999998 77887775 699999
Q ss_pred EEEEecCC-CeEEEeeCCCcEEEEEcCCCc---------------------------cee--------------------
Q 042883 476 SYVKFLSN-NELASASTDSSLRLWDVKENL---------------------------PLH-------------------- 507 (597)
Q Consensus 476 ~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~---------------------------~~~-------------------- 507 (597)
.++.|+++ .+|+++|.|.++++|++...+ +.+
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~i 264 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFI 264 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhhe
Confidence 99999999 889999999999999986210 000
Q ss_pred -----------------------------------eeeCCCCceeEEE--EeecCCEEEEEeCCCcEEEEEccCCccccc
Q 042883 508 -----------------------------------TFRGHTNEKNFVG--LTVNNEYIACGSETNEVFVYHKAISKPAAS 550 (597)
Q Consensus 508 -----------------------------------~~~~~~~~v~~v~--~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 550 (597)
.+.-....++.+. |+|-+++||.|...|.|++||++...+...
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 0000111233333 445578899999999999999998777422
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..... ......|...+|+.||.+|+....|++|.-||.-
T Consensus 345 ttl~~-------s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 345 TTLTH-------SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ceEEe-------ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 21110 1126789999999999999999999999999853
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=5e-20 Score=181.35 Aligned_cols=249 Identities=16% Similarity=0.248 Sum_probs=180.6
Q ss_pred EEEEEEcCCC--CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 332 ISSIEFDRDD--ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 332 v~~i~~~~~~--~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
|+++ ++|+. +.++.|+..|.+.||++.++ ........+...|+++.-+| -=..++.|..+|.|.|++++
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~-------K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK 232 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTG-------KVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLK 232 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccC-------cEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcc
Confidence 6666 56643 56889999999999999987 33344445678999999998 67899999999999999999
Q ss_pred CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCC-CeEE
Q 042883 410 TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSN-NELA 487 (597)
Q Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~-~~l~ 487 (597)
.++.+.+|+...+.|++++|..++..++++|+. .|.+.+||+.. .+.+.. ...|.+.|....|.|. ..++
T Consensus 233 ~dkil~sFk~d~g~VtslSFrtDG~p~las~~~-------~G~m~~wDLe~-kkl~~v~~nah~~sv~~~~fl~~epVl~ 304 (910)
T KOG1539|consen 233 FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS-------NGDMAFWDLEK-KKLINVTRNAHYGSVTGATFLPGEPVLV 304 (910)
T ss_pred cCcEEEEEEccccceeEEEeccCCCeeEEeccC-------CceEEEEEcCC-CeeeeeeeccccCCcccceecCCCceEe
Confidence 999999997666999999999866677777764 45589999975 222222 2234444444444444 3344
Q ss_pred EeeCCCc-------------------------------------------------------------------------
Q 042883 488 SASTDSS------------------------------------------------------------------------- 494 (597)
Q Consensus 488 s~~~d~~------------------------------------------------------------------------- 494 (597)
+++.|+.
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 4444433
Q ss_pred --------------------------------------------------------------------------------
Q 042883 495 -------------------------------------------------------------------------------- 494 (597)
Q Consensus 495 -------------------------------------------------------------------------------- 494 (597)
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~ 464 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVF 464 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEE
Confidence
Q ss_pred -------EEEEEcCCCcceeee---eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc---
Q 042883 495 -------LRLWDVKENLPLHTF---RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD--- 561 (597)
Q Consensus 495 -------v~iwd~~~~~~~~~~---~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--- 561 (597)
|-+|++.+|-...++ ..|.++|++++.+.-++.+++++.+|.+.+||.....++..+..+.......
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee
Confidence 333333333333333 3567788888887778889999999999999998887666665554221110
Q ss_pred ---------------------------CcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 562 ---------------------------DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 562 ---------------------------~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
-.+|...|++++|||||+||++++.|++|++||+-+
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 023899999999999999999999999999999854
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=2.2e-19 Score=167.09 Aligned_cols=245 Identities=16% Similarity=0.245 Sum_probs=173.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
......|....|+|.+..++.....|.+..|++.++.... ..-+........|.|++|.+ +.-+++|..+|.|.|
T Consensus 197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k---~~~~fek~ekk~Vl~v~F~e--ngdviTgDS~G~i~I 271 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVK---RQGIFEKREKKFVLCVTFLE--NGDVITGDSGGNILI 271 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEE---EeeccccccceEEEEEEEcC--CCCEEeecCCceEEE
Confidence 3456788899999966555544458899999988761111 01111222346899999998 345889999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc----------------------
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ---------------------- 463 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~---------------------- 463 (597)
|+..+.+..+....|.+.|.++.... ++.+ ++|+.|+. |..||-.- .+
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr-~Gtl-lSGgKDRk-------i~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLR-DGTL-LSGGKDRK-------IILWDDNY-RKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEec-CccE-eecCccce-------EEeccccc-cccccccCchhcCCeeEEecCCCc
Confidence 99988888777779999999999985 5555 45887666 56665211 00
Q ss_pred ------------------ceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCC---------------------
Q 042883 464 ------------------PLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKEN--------------------- 503 (597)
Q Consensus 464 ------------------~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~--------------------- 503 (597)
-.....+|....+.++.+|+ +.+++++.|+.+++|+-..-
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~v 421 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVV 421 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceE
Confidence 00111245666677777777 77788888888888772110
Q ss_pred ----------------cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCc
Q 042883 504 ----------------LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSY 567 (597)
Q Consensus 504 ----------------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~ 567 (597)
+.+-++.....+++.+.|+|+|.+||.|+.|+.|+||.+..+......... .|.+
T Consensus 422 a~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k---------~~gs 492 (626)
T KOG2106|consen 422 AVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK---------CSGS 492 (626)
T ss_pred EEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee---------ecCc
Confidence 111122223668899999999999999999999999998866554433221 2358
Q ss_pred ceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 568 FISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 568 ~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+|+.+.|++|+++|.+-+.|-.|..|.
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEEc
Confidence 999999999999999999999999994
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=6.1e-20 Score=170.71 Aligned_cols=255 Identities=11% Similarity=0.242 Sum_probs=195.9
Q ss_pred cccccCCCCcEEEEEEcCCCCEEEEeeCCC--------cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCC-C
Q 042883 322 HGDLFHAANIISSIEFDRDDELFASAGVSR--------RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTK-N 392 (597)
Q Consensus 322 ~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~ 392 (597)
+....+|...|.|++.+||.-.+++|-..| .|+|||..+. ............|++|+|++.++ +
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L-------~TL~V~g~f~~GV~~vaFsk~~~G~ 169 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL-------STLHVIGFFDRGVTCVAFSKINGGS 169 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccc-------eeeeeeccccccceeeeecccCCCc
Confidence 344568999999999999988888776555 4999996654 22333334567899999998554 4
Q ss_pred EEEEe--eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce---ee
Q 042883 393 LIASS--DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL---HV 467 (597)
Q Consensus 393 ~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~---~~ 467 (597)
+++.- +.+..+.|||...+......+..+..|...+|+|.+.+++++++ .+.+++|+++. +... ..
T Consensus 170 ~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G--------k~H~~Fw~~~~-~~l~k~~~~ 240 (626)
T KOG2106|consen 170 LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG--------KGHLYFWTLRG-GSLVKRQGI 240 (626)
T ss_pred eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC--------CceEEEEEccC-CceEEEeec
Confidence 44443 34557889999888888777778889999999999999999998 45699999986 3333 23
Q ss_pred eccCC-CceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 468 FNGHK-KAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 468 ~~~~~-~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
+..+. ..|.+++|.+++.+++|.++|.|.||+..+.+..++...|.+.|.+++.-.+|.+|. |+.|..|..|| ...+
T Consensus 241 fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~ 318 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYR 318 (626)
T ss_pred cccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-cccc
Confidence 44333 679999999999999999999999999998888888789999999999999998666 99999999999 3322
Q ss_pred cccccccCCCCCC------------------------------CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 547 PAASHRFGSDADH------------------------------VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 547 ~~~~~~~~~~~~~------------------------------~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.+.....+..... ...-+|....+.++.+|+...+++++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 2222222110000 00013778999999999999999999999999997
No 151
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=8.3e-20 Score=164.84 Aligned_cols=204 Identities=16% Similarity=0.292 Sum_probs=166.3
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC-------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS-------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV 446 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~ 446 (597)
..+|.++|..++|+|.+++.||+|+.|.+|.||.+..+ .++..+.+|...|--++|+|.-.++|+++|.|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D--- 153 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD--- 153 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC---
Confidence 44789999999999999999999999999999998654 45677889999999999999888999998854
Q ss_pred cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCc-eeEEEEeec
Q 042883 447 GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNE-KNFVGLTVN 524 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~v~~s~~ 524 (597)
+.|.+||+.+ +..+.++. |.+.|+++.|+.+ ++|++.+.|..|+|||.++++.+..-.+|.+. ...+.|-.+
T Consensus 154 ----n~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 154 ----NTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred ----ceEEEEeccC-CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 5599999998 66666666 9999999999999 88999999999999999999999988777663 345668888
Q ss_pred CCEEEEEe---CCCcEEEEEccCC-ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE-ecCcccEEEEEec
Q 042883 525 NEYIACGS---ETNEVFVYHKAIS-KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT-ANRKGAIKVLVLA 596 (597)
Q Consensus 525 g~~l~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s-~~~dg~v~iwd~~ 596 (597)
|.++.+|- .+..+-+||..+- +++....+.. +..|.---|+++...++. |-.|+.|+.|.+.
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt----------SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT----------SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEecc----------CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 88555552 3678999997653 3433333322 556777778999888765 5589999999875
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-20 Score=174.98 Aligned_cols=219 Identities=17% Similarity=0.267 Sum_probs=177.5
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe
Q 042883 333 SSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ 412 (597)
Q Consensus 333 ~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 412 (597)
.|++......++++|+..+.|+|||+... .......+|...|++|.++. .+.+|++++..|.|.|..+.++.
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCc
Confidence 34444444579999999999999999854 22334457889999999997 78999999999999999999988
Q ss_pred eeeEEeec-cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEEEe
Q 042883 413 SVMEYEEH-EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELASA 489 (597)
Q Consensus 413 ~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~ 489 (597)
....|... ...|.-+.|+|....+|.+++++|. |.+||+............|..+...|+|+|. -+|++.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-------VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-------VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCe-------EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence 88777644 4556789999977788888887665 9999998744344445679999999999998 568999
Q ss_pred eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc-cccccccCCCCCCCcCcCCCcc
Q 042883 490 STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK-PAASHRFGSDADHVDDDMGSYF 568 (597)
Q Consensus 490 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~h~~~ 568 (597)
+.|..|.+||++..+....+. ...+.+.++|+++|.+|++|+..|.|..||++..+ ++.... .|...
T Consensus 228 G~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s-----------ah~~s 295 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS-----------AHDAS 295 (673)
T ss_pred cccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee-----------ecccc
Confidence 999999999999877666665 46678899999999999999999999999998654 444443 46888
Q ss_pred eEEEEEccCC
Q 042883 569 ISAVCWKSDS 578 (597)
Q Consensus 569 i~~v~~~~~~ 578 (597)
|++|+|-|..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999997764
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=2.6e-20 Score=171.31 Aligned_cols=244 Identities=20% Similarity=0.244 Sum_probs=183.5
Q ss_pred CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.|..+|.++.|+| +...+++.++||+|++-|+.+.... ...........+..+.|+. +...++.|..=|...+
T Consensus 232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----EVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNV 305 (498)
T ss_pred cCCccccceEecCCChhheeeeccCceeeeeeecchhhH-----HHhhcCccceeeeeccccC-CCccEEEeecccceEE
Confidence 5899999999999 4568999999999999999876111 1111112345677788887 4555666666679999
Q ss_pred EeCCCCee-eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc---ceeeeccCCCceEEEEec
Q 042883 406 WDVTTSQS-VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ---PLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 406 wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~ 481 (597)
||++++.. ...+.-|...|.+++++|....+++|+|.|++ ++|||+|.... ++.....|...|.+..|+
T Consensus 306 iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-------~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-------AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred EEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-------eeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 99988765 55566788899999999999999999997666 89999986321 233344699999999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcC----CCcceeeeeCCCC----c--eeEEEEeecCCEEEEEeCCCcEEEEEccCCccccc
Q 042883 482 SN-NELASASTDSSLRLWDVK----ENLPLHTFRGHTN----E--KNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAS 550 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~----~--v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 550 (597)
|. +.|++.+.|..|+|||.. .-.+..++. |.. . .....|.|+..+|++|-.-..|-|||-..++.+..
T Consensus 379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred CCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 99 789999999999999983 333444443 222 1 23467999999999999999999999888887766
Q ss_pred cccCCCCCCCcCcCCCcceEEE-EEccCCCeEEE-ecCcccEEEEE
Q 042883 551 HRFGSDADHVDDDMGSYFISAV-CWKSDSPTMLT-ANRKGAIKVLV 594 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v-~~~~~~~~l~s-~~~dg~v~iwd 594 (597)
+..+. ...|.++ .|+|-+..+++ |+..|.|+||-
T Consensus 458 l~~P~----------~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 458 LHDPE----------SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccCcc----------ccccccceeecccccceeccCCccceEEEEe
Confidence 54432 3345555 69998884555 56788899885
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5e-19 Score=170.64 Aligned_cols=240 Identities=14% Similarity=0.230 Sum_probs=191.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+-.+.|-+++|++ +..|++.+.+|.|.-||+.+. ..........+.|++++.+| .+..++.|+.||.+..+
T Consensus 67 ~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l-------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 67 PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL-------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDF 137 (691)
T ss_pred CCCCceeeEEEcc-CCeEEeecCCceEEEEecccC-------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEE
Confidence 3567899999995 556788888999999999987 33333334578999999999 78999999999988888
Q ss_pred eCCCCeee--eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-------c-cCCCceE
Q 042883 407 DVTTSQSV--MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-------N-GHKKAVS 476 (597)
Q Consensus 407 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-------~-~~~~~v~ 476 (597)
+...+... ..+....++|.+++|+| ++..+++|+.||. |++||... +..+... . +...-|+
T Consensus 138 s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~-------Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 138 SIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGV-------IRIWDVKS-GQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred ecCCceEEEEeecccccceEEEEEecC-CccEEEecccCce-------EEEEEcCC-CceEEEeeecccccccCCceEEE
Confidence 87766544 33444568999999999 8888999886555 99999987 4443311 1 1234588
Q ss_pred EEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 477 YVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 477 ~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
+|.|..++.|++|...|+|.+||...+..+..+..|...|.+++..+++.+++++|.|+.|..|...+++.- ....
T Consensus 209 Sv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-wv~~--- 284 (691)
T KOG2048|consen 209 SVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-WVIN--- 284 (691)
T ss_pred EEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-eeee---
Confidence 999998899999999999999999999999999999999999999999999999999999999987766542 1111
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
....+|...|.+++..++ .|++||.|..+.+-
T Consensus 285 ---~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 285 ---SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred ---ccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 112356888999998866 89999999988764
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.5e-21 Score=193.63 Aligned_cols=211 Identities=19% Similarity=0.327 Sum_probs=179.3
Q ss_pred CCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.|.+.|..+.|++.. ++||+|++||.|.|||+.......... .....+.|.+++|+.....+|++++.+|.+.|
T Consensus 114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVI 188 (1049)
T ss_pred ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence 599999999999965 599999999999999998752111111 22346789999999877889999999999999
Q ss_pred EeCCCCeeeeEEeeccc--eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 406 WDVTTSQSVMEYEEHEK--RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
||++..+.+..+..+.+ .+..++|+|++...+++++.|.. .-.|.+||+|....+++++.+|..+|.++.|++.
T Consensus 189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS----APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC----CceeEeecccccCCchhhhcccccceeeeccCCC
Confidence 99998887777765543 47899999987788887776653 4569999999888899999999999999999987
Q ss_pred --CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCC-EEEEEeCCCcEEEEEccCCc
Q 042883 484 --NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE-YIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 484 --~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~~ 546 (597)
.++++++.|+.|.+|+..+++.+..+....+++..+.|.|... .+++++.||.|.||.+....
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 6799999999999999999999999998888999999999765 78889999999999987654
No 156
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.2e-19 Score=163.79 Aligned_cols=212 Identities=16% Similarity=0.285 Sum_probs=168.3
Q ss_pred cCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 326 FHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 326 ~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
-||.++|..++|+| +...||+|+.|.+|.||++..........+....+.+|...|.-|+|+|...+.|++++.|..|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 47999999999999 66789999999999999998763333333444567789999999999998899999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCC-ceEEEEecCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-AVSYVKFLSN 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~v~~~~~ 483 (597)
+||+.+|..+.++. |.+.|+++.|+. +|.++++++.|+. |+|||.++ +..+..-.+|.+ .-..+.|..+
T Consensus 158 iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKk-------vRv~dpr~-~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 158 IWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKK-------VRVIDPRR-GTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccce-------eEEEcCCC-CcEeeecccccCCCcceeEEecc
Confidence 99999999888886 999999999998 9999999997665 99999998 777777777775 3445566677
Q ss_pred CeEEEee----CCCcEEEEEcCCCc---ceeeeeCCCCceeEEEEeecCCEEE-EEeCCCcEEEEEccCCccc
Q 042883 484 NELASAS----TDSSLRLWDVKENL---PLHTFRGHTNEKNFVGLTVNNEYIA-CGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 484 ~~l~s~~----~d~~v~iwd~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~i~iwd~~~~~~~ 548 (597)
+.+++.+ .+..+-+||..+-. ....+.. ++.|.---|++|..+|+ +|-.|+.|+.|.+....+.
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence 5566655 46779999987632 2334443 44555566888877665 5557999999999877654
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=156.86 Aligned_cols=205 Identities=20% Similarity=0.329 Sum_probs=162.9
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEec-CCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNK-YTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~~l~s~~~dg~i~iw 406 (597)
+-+.|.|+.|.|++..+++-. |..|.+|++..+......... .....+....++-+|+| .+++.+++.+ |+++..|
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s-s~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~ 198 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-SESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFW 198 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc-cccccccceecccccCCCCccceEEEeC-CCcEEEE
Confidence 455899999999999988776 889999999887322111111 11122456788889999 5677777765 8999999
Q ss_pred eCCCCeeeeEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--
Q 042883 407 DVTTSQSVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 407 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-- 483 (597)
|+++......+. .|...|.++.|+|+...+|++|++||. |+|||.|....++..+.+|..+|++|.|+|.
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-------vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-------VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-------EEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 999887766654 688899999999988889999997665 9999999988999999999999999999998
Q ss_pred CeEEEeeCCCcEEEEEcCC-----------------------------CcceeeeeCCCCceeEEEEeecCCE-EEEEeC
Q 042883 484 NELASASTDSSLRLWDVKE-----------------------------NLPLHTFRGHTNEKNFVGLTVNNEY-IACGSE 533 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~-----------------------------~~~~~~~~~~~~~v~~v~~s~~g~~-l~~~~~ 533 (597)
..|++||.|..|.+|-... ...+.++..|...|++++||.-..+ +|+-+.
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 7789999999999996532 0134467788999999999987665 566799
Q ss_pred CCcEEEEEc
Q 042883 534 TNEVFVYHK 542 (597)
Q Consensus 534 d~~i~iwd~ 542 (597)
||++.|=.+
T Consensus 352 DGRviIs~V 360 (370)
T KOG1007|consen 352 DGRVIISSV 360 (370)
T ss_pred CceEEeecC
Confidence 999988654
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.3e-19 Score=156.54 Aligned_cols=210 Identities=17% Similarity=0.237 Sum_probs=153.4
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCee-----eeEEeeccceeEEEEeCCCCCceEEeecCCCcccC
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS-----VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~ 448 (597)
..+|...|++++|+. +|..|++++.|+.|+||++++-.. ++. .-..+-.+.+.|.|+-..++++.-.
T Consensus 82 LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~------ 153 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKR------ 153 (420)
T ss_pred hhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEcc------
Confidence 347899999999998 899999999999999999976321 111 1122357889999955556665543
Q ss_pred CCCeEEEEEccCC--Cc-cee--------eeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCce
Q 042883 449 ADHHIHYYDLRNI--SQ-PLH--------VFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEK 516 (597)
Q Consensus 449 ~d~~i~i~d~~~~--~~-~~~--------~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 516 (597)
...+++|.+... +. +.. .-..|.-.+-.+-.... .+|++++.|..|.+||++ |+.+..+......-
T Consensus 154 -g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 154 -GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred -CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 234899987531 11 111 11234455556655555 679999999999999999 89999988777777
Q ss_pred eEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 517 NFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 517 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+..+.||+|++|++++..-.|++|.+--++--. +........-.+|...|..++|+++...+++.+.||+++|||++
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~---fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT---FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcc---hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 889999999999999999999999864322110 00001112234689999999999999999999999999999975
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1e-19 Score=155.69 Aligned_cols=243 Identities=15% Similarity=0.208 Sum_probs=179.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+|.+.|+++.|..++. |++|...|.|++|++.+. ...+.....+...|+.+..-| +..+.+-+.|+.+.+|
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~------r~~~~~r~~g~~~it~lq~~p--~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE------RDLPLIRLFGRLFITNLQSIP--NDSLDTQGRDPLLILW 82 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecC------ccchhhhhhccceeeceeecC--CcchhhcCCCceEEEE
Confidence 7889999999998765 889999999999999886 222333335677888888887 3678888899999999
Q ss_pred eCCCCeeeeEEe-----------------------------------------------------eccceeEEEEeCCCC
Q 042883 407 DVTTSQSVMEYE-----------------------------------------------------EHEKRAWSVDFSCTE 433 (597)
Q Consensus 407 d~~~~~~~~~~~-----------------------------------------------------~~~~~v~~~~~~~~~ 433 (597)
++.-+..+..-. +..+.+.+..+....
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 986532211100 001122333222111
Q ss_pred -CceEEeecCCCcccCCCCeEEEEEccCCC---------cceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC
Q 042883 434 -PSMLVSGSDDCKVGSADHHIHYYDLRNIS---------QPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE 502 (597)
Q Consensus 434 -~~~l~s~~~d~~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~ 502 (597)
..+++.+ |.++|.+.+||+.... +.......|..+|.++.+.+. +.=++|+.+..+..|++..
T Consensus 163 ~s~~llla------GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 163 GSTFLLLA------GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred cceEEEEE------eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 1222222 4577889999998732 223334568899999999887 6678889888999998864
Q ss_pred C--c--ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC
Q 042883 503 N--L--PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS 578 (597)
Q Consensus 503 ~--~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 578 (597)
. . .-..+......+..+.+-||++++|++|.||+|+||..++..++..+.+ |...|++++|+|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-----------Hsagvn~vAfspd~ 305 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-----------HSAGVNAVAFSPDC 305 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-----------hhcceeEEEeCCCC
Confidence 3 1 1122222345678899999999999999999999999999999999886 68999999999999
Q ss_pred CeEEEecCcccEEEEEe
Q 042883 579 PTMLTANRKGAIKVLVL 595 (597)
Q Consensus 579 ~~l~s~~~dg~v~iwd~ 595 (597)
..+|+++.|+.|-+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 99999999999999986
No 160
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=3.8e-18 Score=165.30 Aligned_cols=230 Identities=11% Similarity=0.112 Sum_probs=160.7
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCCCcEEEEeCCCCeeeeEEeec
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDGIVTIWDVTTSQSVMEYEEH 420 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~ 420 (597)
..+++++.|+.|++||+.++ ...........+.+++|+| ++..+ ++++.++.|++||..+++....+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--------~~~~~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--------EVTRTFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--------ceEEEEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence 56889999999999999776 2222333334567899999 55554 67778899999999988877766544
Q ss_pred cceeEEEEeCCCCCceE-EeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCC-cEEE
Q 042883 421 EKRAWSVDFSCTEPSML-VSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDS-SLRL 497 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l-~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~-~v~i 497 (597)
. .+..++|+| ++..+ ++++. ++.|++||+.+ ...+..+.. ...+.+++|+|+ ..+++++.++ .+.+
T Consensus 73 ~-~~~~~~~~~-~g~~l~~~~~~-------~~~l~~~d~~~-~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 73 P-DPELFALHP-NGKILYIANED-------DNLVTVIDIET-RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHF 141 (300)
T ss_pred C-CccEEEECC-CCCEEEEEcCC-------CCeEEEEECCC-CeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEE
Confidence 3 356789999 55544 55443 44599999987 555555542 334688999999 6677777664 4678
Q ss_pred EEcCCCcceeeeeCCCCceeEEEEeecCCEEEEE-eCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 498 WDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
||..+++....+.. ...+..++|+|+|.+|+++ ..++.|++||+.+++.+..+.+.... .. ........++|+|
T Consensus 142 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~~--~~~~~~~~i~~s~ 216 (300)
T TIGR03866 142 IDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG--VH--PEAVQPVGIKLTK 216 (300)
T ss_pred EeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc--cc--cccCCccceEECC
Confidence 89988776655442 2345789999999988655 46899999999988776655432100 00 0022345789999
Q ss_pred CCCeEEE-ecCcccEEEEEec
Q 042883 577 DSPTMLT-ANRKGAIKVLVLA 596 (597)
Q Consensus 577 ~~~~l~s-~~~dg~v~iwd~~ 596 (597)
++++++. .+.++.|.+||+.
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECC
Confidence 9998544 4567789999975
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.4e-19 Score=159.08 Aligned_cols=243 Identities=14% Similarity=0.258 Sum_probs=178.9
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC-CCCEEEEeeCCCcEEEEeCCCCeeeeE--Ee
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY-TKNLIASSDYDGIVTIWDVTTSQSVME--YE 418 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~ 418 (597)
..+|++..+|.|++||..++ .......++...+..+.|... ....+.+|+.||.|++||+++...... +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 56889999999999999886 233344456677788888753 467899999999999999988655433 33
Q ss_pred ecc-ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC--CeEEEeeCCCc
Q 042883 419 EHE-KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN--NELASASTDSS 494 (597)
Q Consensus 419 ~~~-~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~--~~l~s~~~d~~ 494 (597)
.+. .+..+++.+- ..+++++|..-. ..+..|.+||+|...+++..+ ..|.+.|+++.|+|. ++|++||.||.
T Consensus 114 ~~~~~~f~~ld~nc-k~~ii~~GtE~~---~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 114 QQSGTPFICLDLNC-KKNIIACGTELT---RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred CCCCCcceEeeccC-cCCeEEeccccc---cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence 444 4556666654 567777765322 357789999999866645554 579999999999998 89999999999
Q ss_pred EEEEEcCCC---cceeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCccccccccCC---------------
Q 042883 495 LRLWDVKEN---LPLHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAASHRFGS--------------- 555 (597)
Q Consensus 495 v~iwd~~~~---~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------- 555 (597)
|.|||+... ..+...-.|...|..+.|..++ +.|.+-+..+...+|++..+.....+..+.
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 999999753 2333334567778999999887 357788889999999988766443332210
Q ss_pred ------------------------------------CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 556 ------------------------------------DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 556 ------------------------------------~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
........+|..-|.++.|...+..+.|||.||.+.+|..
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 0000111236777888889888899999999999999973
No 162
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=9.2e-19 Score=174.23 Aligned_cols=252 Identities=16% Similarity=0.266 Sum_probs=188.2
Q ss_pred ccCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC-CCEEEEeeCCCc
Q 042883 325 LFHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT-KNLIASSDYDGI 402 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~-~~~l~s~~~dg~ 402 (597)
.+.....|.++.|+| +..+++.|.++|.|.+||+..+.... ..........|..+++.+.|..+. +.-|++++.||.
T Consensus 238 ~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~ 316 (555)
T KOG1587|consen 238 VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS 316 (555)
T ss_pred EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCc
Confidence 345778999999999 67788999999999999998773321 112223445688999999997622 234888888999
Q ss_pred EEEEeCCCCee-e-----eEEe------eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE---EccCCC----c
Q 042883 403 VTIWDVTTSQS-V-----MEYE------EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY---DLRNIS----Q 463 (597)
Q Consensus 403 i~iwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~---d~~~~~----~ 463 (597)
|..|+++.-.. + .... .....+++++|.+.+...|+.|+.+|. |+-- +.+... +
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~-------v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK-------VYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE-------EEEEeccCCccccccccc
Confidence 99998764321 1 1111 123468999999989999999997765 4442 222211 2
Q ss_pred ceeeeccCCCceEEEEecCC-Ce-EEEeeCCCcEEEEEcC-CCcceeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEE
Q 042883 464 PLHVFNGHKKAVSYVKFLSN-NE-LASASTDSSLRLWDVK-ENLPLHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFV 539 (597)
Q Consensus 464 ~~~~~~~~~~~v~~v~~~~~-~~-l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~i 539 (597)
....+..|.+.|.++.++|- .. |++++ |.+|+||... ...++..+..+...+++++|||.. ..++++..||.|.|
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 24455678899999999998 44 44544 9999999988 778888888888889999999985 47788888999999
Q ss_pred EEccCC--ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 540 YHKAIS--KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 540 wd~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
||+... +++...... ....+.+.|+++|+.|+.|+..|.+++|++.
T Consensus 469 WDLl~~~~~Pv~s~~~~-----------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVC-----------SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhhhccccCCccccccc-----------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 998754 444444332 5567888899999999999999999999985
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=9.4e-20 Score=172.13 Aligned_cols=251 Identities=14% Similarity=0.192 Sum_probs=189.3
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCcc-CCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVN-EPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+..|.+.|++++|+|....|++++.||++.+|++..... ............+|.++|.|+++.+ ++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCce
Confidence 4557899999999999999999999999999999954321 1223333445668999999999998 7999999999999
Q ss_pred EEEEeCCCC----------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--
Q 042883 403 VTIWDVTTS----------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-- 470 (597)
Q Consensus 403 i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-- 470 (597)
|+.|++... .....+.||.+.||.+++++ ....|++++.||+ +++|+... ..+ .+|..
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgT-------vr~w~~~~-~~~-~~f~~~~ 437 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGT-------VRLWEPTE-ESP-CTFGEPK 437 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCce-------EEeeccCC-cCc-cccCCcc
Confidence 999965421 23456779999999999998 7777899886555 99999876 333 33432
Q ss_pred CCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCC-------CCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 471 HKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGH-------TNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 471 ~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
..+...++.+-.. ...++...-+.-.++|+.....+..+... ...++.+.++|.+.+.+++..|+.|+++|
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 2233455555433 22333333444445555555444444311 13466788999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 542 KAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..+++++..... |...++++++.|+|.+|++|+.||.|++|.++
T Consensus 518 n~~~~~l~s~~a-----------~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 518 NKTGKILHSMVA-----------HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ccccccchheee-----------ccceecceeecCCCceEEeecCCceeehhhcc
Confidence 999999887763 58899999999999999999999999999874
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=159.97 Aligned_cols=263 Identities=14% Similarity=0.174 Sum_probs=190.4
Q ss_pred eeeccccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEe--cCCCceeEEEEecCCCCEEE
Q 042883 318 AELRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEM--PTRSKLSCLSWNKYTKNLIA 395 (597)
Q Consensus 318 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~~l~ 395 (597)
..+....+.+|.+.|+++.|+.++++|++|+.|..+++|++...-.. ...+++... .|.+.|.|++|+. ++.+++
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~ 121 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR--KTPKPIGVMEHPHRSNIFSLEFDL-ENRFLY 121 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh--cCCCCceeccCccccceEEEEEcc-CCeeEe
Confidence 34445667899999999999999999999999999999998754111 112333333 4668999999998 788999
Q ss_pred EeeCCCcEEEEeCCCCeeeeEEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec--cC
Q 042883 396 SSDYDGIVTIWDVTTSQSVMEYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--GH 471 (597)
Q Consensus 396 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--~~ 471 (597)
+|+.+++|.+.|+.+.+.+..+.. ..+.|+.+..+| ..++|++.+.++. |.+||.+....++..+- ..
T Consensus 122 SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~-------V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKL-------VSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred cCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCce-------EEEEeccCCCCCCceeeecCC
Confidence 999999999999999888777643 345899999999 5677777776555 99999987443444332 23
Q ss_pred CCceEEEEecCC--CeEEEeeCCCcEEEEEcCCC-cceeeeeCCCC------ceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 472 KKAVSYVKFLSN--NELASASTDSSLRLWDVKEN-LPLHTFRGHTN------EKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 472 ~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~------~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
......+-|+|. .+|++.+..+-+-+||++.. .++....+..+ .-.++.|+|+|..+++--....-.+||+
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 456788999998 77899999999999999863 23333222211 2246889999998887766666778888
Q ss_pred cCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 543 AISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+.+.... .+.... .+.-....+.+++|..+. .+++|+.+-.|++|.+.
T Consensus 274 ~S~R~~V~-k~D~N~---~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 274 ISQRCFVL-KSDHNP---NGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred ecccceeE-eccCCC---Ccceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 76443321 111000 001124567888887554 49999999999999873
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.2e-18 Score=158.18 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=132.7
Q ss_pred CCCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCc--cCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 328 AANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPR--DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
...+|+++.|.+++. .++||+.|..|+||.+........ ..........|...|++|.|+| +++++++|+.+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEE
Confidence 567899999999776 999999999999999877632221 2222334456889999999999 899999999999999
Q ss_pred EEeCC--------C--------CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee
Q 042883 405 IWDVT--------T--------SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF 468 (597)
Q Consensus 405 iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~ 468 (597)
+|-.. + ......+.+|...|++++|+| ++.++++++-| +.+++||+.. ++....+
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~d-------ns~~l~Dv~~-G~l~~~~ 161 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVD-------NSVRLWDVHA-GQLLAIL 161 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeecc-------ceEEEEEecc-ceeEeec
Confidence 99765 2 123455678999999999999 89999998854 4599999998 8889999
Q ss_pred ccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcC
Q 042883 469 NGHKKAVSYVKFLSN-NELASASTDSSLRLWDVK 501 (597)
Q Consensus 469 ~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~ 501 (597)
..|...+..++|.|- .++++-+.|...+++++.
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeee
Confidence 999999999999998 667777777766666554
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=7.1e-19 Score=169.90 Aligned_cols=257 Identities=16% Similarity=0.218 Sum_probs=199.7
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.-+.||.+.|.+++|+|.|.+|++.+.|.+-++|-.-..... .+.......|...++|+++-+ +...+++|.....
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKV 430 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeecccccccccceeeehcc-CCceeeeccccee
Confidence 344589999999999999999999999999999976532111 233333345788899999997 5778888888888
Q ss_pred EEEEeCCC-------------------------------------------Ce---------------------------
Q 042883 403 VTIWDVTT-------------------------------------------SQ--------------------------- 412 (597)
Q Consensus 403 i~iwd~~~-------------------------------------------~~--------------------------- 412 (597)
+++|+... |.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99986420 00
Q ss_pred ------eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-Ce
Q 042883 413 ------SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 413 ------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 485 (597)
.+..+.||.-.|++++.+| ++++++++...... ....|++|+..+ -..+..+.+|.-.|+.++|+|+ .+
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~--ehAvI~lw~t~~-W~~~~~L~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLK--EHAVIRLWNTAN-WLQVQELEGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCc--cceEEEEEeccc-hhhhheecccceEEEEEEECCCCcE
Confidence 0112236888999999999 99999999876543 445699999887 6667788999999999999999 88
Q ss_pred EEEeeCCCcEEEEEcCCCc----ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC--ccccccccCCCCCC
Q 042883 486 LASASTDSSLRLWDVKENL----PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS--KPAASHRFGSDADH 559 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~ 559 (597)
|++.|.|.++.+|...... .....+.|...|.+..|+|++.++++++.|..|.+|..... +.+..+...
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~----- 661 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL----- 661 (764)
T ss_pred EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-----
Confidence 9999999999999875422 22336789999999999999999999999999999998877 444332211
Q ss_pred CcCcCCCcceEEEEEccC-----CCeEEEecCcccEEEEEec
Q 042883 560 VDDDMGSYFISAVCWKSD-----SPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~-----~~~l~s~~~dg~v~iwd~~ 596 (597)
.+..+|++++|.|- +..++.|-..|.|.+|...
T Consensus 662 ----~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 662 ----KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ----ccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 24788999999862 3356778899999999853
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.2e-19 Score=154.28 Aligned_cols=193 Identities=18% Similarity=0.244 Sum_probs=161.1
Q ss_pred eeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC
Q 042883 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN 460 (597)
Q Consensus 381 i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~ 460 (597)
..|+.|++ -|.+|++|+.||.|.|||+.+...-..+.+|..+|++++|++ ++..|+|+|.|.. |.+||+..
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~s-------i~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWS-------IKLWDLLK 96 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCce-------eEEEeccC
Confidence 78999999 799999999999999999999888888899999999999999 9999999996655 99999998
Q ss_pred CCcceeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCC--CC----ceeEEEEeecCCEEEEEe
Q 042883 461 ISQPLHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGH--TN----EKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 461 ~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~----~v~~v~~s~~g~~l~~~~ 532 (597)
+.++..+. ..++|+...|+|. +.+++.-.+..-.+.++..+ .+++-.. .+ ...+..|++.|+||++|.
T Consensus 97 -gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 97 -GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred -CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEec
Confidence 66887776 6789999999998 66777666666677776653 3332211 11 123346889999999999
Q ss_pred CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 533 ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 533 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..|.+.+||..+-+.+..+.... ...|..+.|+..|++|+.-+.|..|+.|++.
T Consensus 173 sKGkllv~~a~t~e~vas~rits----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITS----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CcceEEEEecchheeeeeeeech----------heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999999999999988887642 4679999999999999999999999999974
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.4e-18 Score=143.02 Aligned_cols=234 Identities=17% Similarity=0.278 Sum_probs=173.0
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCc--cCCCCc-eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPR--DVHYPM-VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~--~~~~~~-~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
|.+-+|+|.+++|++|..+|.|.++.+........ ....++ ....|.++|+.++|. ..+|++|+ ||.|+=|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEeee
Confidence 44457999999999999999999999876522211 122222 336799999999998 35777776 699999876
Q ss_pred CCCee------eeEE--ee-----ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCce
Q 042883 409 TTSQS------VMEY--EE-----HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV 475 (597)
Q Consensus 409 ~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 475 (597)
+.... .... .- .-..|+++...|..+.+|.+|+ |+.++-||+.+ ++..+.+++|.+.|
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG--------D~~~y~~dlE~-G~i~r~~rGHtDYv 159 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG--------DGVIYQVDLED-GRIQREYRGHTDYV 159 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC--------CeEEEEEEecC-CEEEEEEcCCccee
Confidence 43211 1111 11 1246899999996777777664 56699999998 88899999999999
Q ss_pred EEEEec-CCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCC----------ceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 476 SYVKFL-SNNELASASTDSSLRLWDVKENLPLHTFRGHTN----------EKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 476 ~~v~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----------~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
.+++-- ..+.+++|+.||+++|||.++++.+..+..... .| .+..-+..++++|+ ...+.+|+++.
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGg-Gp~lslwhLrs 236 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGG-GPKLSLWHLRS 236 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecC-CCceeEEeccC
Confidence 999873 348999999999999999999998887753221 23 34444677888775 46799999999
Q ss_pred CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 545 SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.++...+++ ...+..+.|.. +.+++++..+.|.-|.+
T Consensus 237 se~t~vfpi------------pa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 237 SESTCVFPI------------PARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CCceEEEec------------ccceeEeeeec--ceEEEeccccceeeeee
Confidence 999998887 55688888863 45777776667777765
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=151.50 Aligned_cols=234 Identities=15% Similarity=0.236 Sum_probs=175.1
Q ss_pred CCCcEEEEEEc-------CCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecC---CCceeEEEEecCCCCEEEEe
Q 042883 328 AANIISSIEFD-------RDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPT---RSKLSCLSWNKYTKNLIASS 397 (597)
Q Consensus 328 ~~~~v~~i~~~-------~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~~l~s~ 397 (597)
....|+..+|- |+..++++.+.+.-|++||..++..... ...+.| -....+++|+| +|..|++|
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraS-----y~~ydh~de~taAhsL~Fs~-DGeqlfaG 176 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRAS-----YRAYDHQDEYTAAHSLQFSP-DGEQLFAG 176 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccc-----hhhhhhHHhhhhheeEEecC-CCCeEeec
Confidence 45678888886 5778999999999999999998832211 111112 23456899999 78888887
Q ss_pred eCCCcEEEEeC-CCCeee--e-EE----eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 398 DYDGIVTIWDV-TTSQSV--M-EY----EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 398 ~~dg~i~iwd~-~~~~~~--~-~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
. ...|++||+ +.|..- . ++ .+..+.+.+++|+|.+...++.++.... +-||.-.. +.++..+.
T Consensus 177 y-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~-------~giy~~~~-~~pl~llg 247 (406)
T KOG2919|consen 177 Y-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQR-------VGIYNDDG-RRPLQLLG 247 (406)
T ss_pred c-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccce-------eeeEecCC-CCceeeec
Confidence 6 689999998 555321 1 11 1346788999999988889999986554 56666554 67888888
Q ss_pred cCCCceEEEEecCC-CeEEEee-CCCcEEEEEcCC-CcceeeeeCCCCc-eeEE--EEeecCCEEEEEeCCCcEEEEEcc
Q 042883 470 GHKKAVSYVKFLSN-NELASAS-TDSSLRLWDVKE-NLPLHTFRGHTNE-KNFV--GLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 470 ~~~~~v~~v~~~~~-~~l~s~~-~d~~v~iwd~~~-~~~~~~~~~~~~~-v~~v--~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
+|.+.|+.+.|.++ +.|++|+ .|..|..||+|. +.++..+..|... -..| ...|+|++|++|+.||.|++||++
T Consensus 248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 99999999999999 8888877 477899999997 5567777766552 2234 456789999999999999999998
Q ss_pred C-CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 544 I-SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 544 ~-~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
+ +..+..+.. |...++.|+++|--+++++++..
T Consensus 328 ~~gn~~sv~~~-----------~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 328 DLGNEVSVTGN-----------YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCccccccc-----------ccccccceecCcccceeeeccCc
Confidence 7 554544432 47889999999988888877654
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=3.4e-18 Score=164.28 Aligned_cols=232 Identities=16% Similarity=0.230 Sum_probs=169.1
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
.|+.++|-|||..|+.+. +..+.+||++.+ .......+|...|++|+|+. +|..+++|+.|..|.+|+..-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG-------~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG-------TLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc-------ccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc
Confidence 899999999999888776 457999999987 34445568999999999998 899999999999999998542
Q ss_pred CeeeeEEeeccce---------------------------------------eEEEEeCCCCCceEEeecCCCcccCCCC
Q 042883 411 SQSVMEYEEHEKR---------------------------------------AWSVDFSCTEPSMLVSGSDDCKVGSADH 451 (597)
Q Consensus 411 ~~~~~~~~~~~~~---------------------------------------v~~~~~~~~~~~~l~s~~~d~~~~~~d~ 451 (597)
...+ .+ .|++. |.+++|.. +|.+++.|- .||
T Consensus 85 EG~L-kY-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~-------~nG 154 (1081)
T KOG1538|consen 85 EGIL-KY-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGM-------FNG 154 (1081)
T ss_pred ccee-ee-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEec-------cCc
Confidence 1111 11 24444 44455553 555555544 566
Q ss_pred eEEEEEccCCCccee--eeccCCCceEEEEecCC-C-----eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEee
Q 042883 452 HIHYYDLRNISQPLH--VFNGHKKAVSYVKFLSN-N-----ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTV 523 (597)
Q Consensus 452 ~i~i~d~~~~~~~~~--~~~~~~~~v~~v~~~~~-~-----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~ 523 (597)
+|.+-+-.. ...+. .-.+.+++|++++|+|. + .+++.....++.+|.+. |+.+..-..-.-...++++.+
T Consensus 155 TIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~ 232 (1081)
T KOG1538|consen 155 TISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT 232 (1081)
T ss_pred eEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc
Confidence 677775442 22222 22356789999999997 2 37778888888888765 555544333344557899999
Q ss_pred cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 524 NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 524 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+|.|++.||.|+.+++|.. .|-.+.+... -+.+|+.|+..|++++++.|+.||+|--|++
T Consensus 233 NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~-----------~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTR-DGVRLGTVGE-----------QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCcEEEEccCCCceEEEee-cCeEEeeccc-----------cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999999999999964 3333333221 1789999999999999999999999998876
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1e-17 Score=146.67 Aligned_cols=204 Identities=18% Similarity=0.288 Sum_probs=153.8
Q ss_pred ecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC----eeeeEEeeccceeEEEEeC-CCCCceEEeecCCCcccCC
Q 042883 375 MPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS----QSVMEYEEHEKRAWSVDFS-CTEPSMLVSGSDDCKVGSA 449 (597)
Q Consensus 375 ~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d~~~~~~ 449 (597)
.+|..-|.++.|.+ .|+.+++|+.|++|+|||.++. .+....+.|.+.|+.+.|. |.-|+.+++++.|++
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt---- 84 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT---- 84 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc----
Confidence 35678899999999 7999999999999999997543 4566678899999999995 456889999997665
Q ss_pred CCeEEEEEccC-----CC---cceeeeccCCCceEEEEecCC--C-eEEEeeCCCcEEEEEcCC------Ccceeeee--
Q 042883 450 DHHIHYYDLRN-----IS---QPLHVFNGHKKAVSYVKFLSN--N-ELASASTDSSLRLWDVKE------NLPLHTFR-- 510 (597)
Q Consensus 450 d~~i~i~d~~~-----~~---~~~~~~~~~~~~v~~v~~~~~--~-~l~s~~~d~~v~iwd~~~------~~~~~~~~-- 510 (597)
+.||.-.. .+ ....++....+.|++|.|.|. | .+++++.||.++||+... ....+.+.
T Consensus 85 ---v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 85 ---VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred ---eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 99997621 01 123455667789999999998 4 389999999999998754 23333333
Q ss_pred -----CCCCceeEEEEeec---CCEEEEEeCC-----CcEEEEEccCCc--cccccccCCCCCCCcCcCCCcceEEEEEc
Q 042883 511 -----GHTNEKNFVGLTVN---NEYIACGSET-----NEVFVYHKAISK--PAASHRFGSDADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 511 -----~~~~~v~~v~~s~~---g~~l~~~~~d-----~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 575 (597)
.+.....|+.|+|. ..+|++|+.+ +.+.||....+. ....-.+ .+|..+|++|+|.
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L---------~d~~dpI~di~wA 232 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL---------PDHTDPIRDISWA 232 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc---------CCCCCcceeeeec
Confidence 35556788999975 4578888765 478899876533 2222222 1469999999999
Q ss_pred cCC----CeEEEecCcccEEEEEec
Q 042883 576 SDS----PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 576 ~~~----~~l~s~~~dg~v~iwd~~ 596 (597)
|+- ..||+++.|| |+||.+.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEe
Confidence 953 4689999999 9999985
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=177.63 Aligned_cols=240 Identities=17% Similarity=0.266 Sum_probs=185.9
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|.+.|+|+.|+..|.++++|++|..|+||...+. .......+|.+.|+.++.+. ++.++++++.|..|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVI 256 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccch-------hhhccCCCCccccchhccch-hhhhhhhcccCceE
Confidence 45689999999999999999999999999999998776 44455668999999999997 67889999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC-CC------------cceeee--
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN-IS------------QPLHVF-- 468 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~-~~------------~~~~~~-- 468 (597)
++|-+.++.++..+.+|.+.|++++|+| - .+.+. ||++++||.+- .. ..+..+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP-~----~sss~-------dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSP-R----ASSSD-------DGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCc-c----ccCCC-------CCceEeccccccccccCCCCCCcccccceeeeec
Confidence 9999999999999999999999999999 2 25554 45599999871 00 000000
Q ss_pred -------c-c------CCCceEEEEecCC------------CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEe
Q 042883 469 -------N-G------HKKAVSYVKFLSN------------NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLT 522 (597)
Q Consensus 469 -------~-~------~~~~v~~v~~~~~------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s 522 (597)
. + ....+-.++|... .+.+++-.+..+.+|++.+|...+.+.+|...++.+.++
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 0 0 0001112222222 223334455668889999999999999999999999999
Q ss_pred ecCC-EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 523 VNNE-YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 523 ~~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
|-.. +..+++.||...|||+-.|.++..+..+ .+.+..-.|+++|..++....-|.+.|+.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~g-----------h~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-----------HGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecc-----------cceeeccccCCCCceEecCCCCCceEEec
Confidence 9765 4567899999999999999988877643 45677788999999888888888888765
No 173
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=7.3e-17 Score=145.12 Aligned_cols=234 Identities=16% Similarity=0.238 Sum_probs=177.0
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC--CcEEEEe
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD--GIVTIWD 407 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d--g~i~iwd 407 (597)
..+..+.|+.+...|..|+.|| .++|+...... ..........|.-+-|+ ..++|..+.+ ..+++++
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------CFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHH-------hhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEE
Confidence 4566777999998899999887 57777665411 11111123345455565 3566655544 3599999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc---CCCceEEEEecCC-
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG---HKKAVSYVKFLSN- 483 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~- 483 (597)
.+.+..+..+. ....|.++.++. .++++ += ...|+|||++. .+.+.++.. +...+.++++++.
T Consensus 75 ~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV-~L--------ee~IyIydI~~-MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 75 FKKKTTICEIF-FPTSILAVRMNR--KRLVV-CL--------EESIYIYDIKD-MKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred cccCceEEEEe-cCCceEEEEEcc--ceEEE-EE--------cccEEEEeccc-ceeehhhhccCCCccceEeeccCCCC
Confidence 98888887774 567899999974 34333 32 33499999998 677776643 4455666666665
Q ss_pred CeEEEe--eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCc-EEEEEccCCccccccccCCCCCCC
Q 042883 484 NELASA--STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE-VFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 484 ~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
.+++.- ...|.|.|||..+-+++..+..|.+.+.+++|+++|.+||+++..|+ |+||.+.+|..+..+..|..
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---- 217 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---- 217 (391)
T ss_pred ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----
Confidence 466643 35688999999999999999999999999999999999999999987 79999999999998887653
Q ss_pred cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...|.+++|+|++++|++.+..++|+||.++
T Consensus 218 -----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 218 -----PVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred -----eeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 5579999999999999999999999999885
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=4.9e-18 Score=162.30 Aligned_cols=238 Identities=17% Similarity=0.273 Sum_probs=175.4
Q ss_pred EcCCCCEEEE--eeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC---
Q 042883 337 FDRDDELFAS--AGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS--- 411 (597)
Q Consensus 337 ~~~~~~~l~t--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~--- 411 (597)
|+.+..++|+ .+..|.|-||++.....-. ...+-.......|+.+.|+|.+...|++++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP---Dgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP---DGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCC---cccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 3334455554 4557899999998652211 1122233456789999999999999999999999999998654
Q ss_pred ----eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE
Q 042883 412 ----QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 412 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l 486 (597)
.....+..|...|+++.|+|--.+.|+++++|.+ |.+||+++ .+....+.+|.+.|.+++|+|+ ..+
T Consensus 664 e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-------i~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 664 ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-------IELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred cccCCcceeeecccceEEEEEecchhhhHhhhhhccce-------eeeeehhh-hhhhheeccCcCceeEEEECCCCcce
Confidence 3456678899999999999988899999986655 99999998 7778889999999999999999 779
Q ss_pred EEeeCCCcEEEEEcCCCc-ceeeeeCCCC-ceeEEEEeecCCEEEEEeCCC----cEEEEEccCC--ccccccccCCCCC
Q 042883 487 ASASTDSSLRLWDVKENL-PLHTFRGHTN-EKNFVGLTVNNEYIACGSETN----EVFVYHKAIS--KPAASHRFGSDAD 558 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~-~~~~~~~~~~-~v~~v~~s~~g~~l~~~~~d~----~i~iwd~~~~--~~~~~~~~~~~~~ 558 (597)
++.+.||+|++|..+++. +++.-.+..+ .--.|.|.-+|+++++.|.|. .|.+||..+- .++.+..+..
T Consensus 736 AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--- 812 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--- 812 (1012)
T ss_pred eeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc---
Confidence 999999999999998753 4444333222 123578989999999888764 6889997653 3444333221
Q ss_pred CCcCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEe
Q 042883 559 HVDDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVL 595 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~ 595 (597)
...+.--.+++|.. +|++|-.|..|.+|.+
T Consensus 813 -------aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 813 -------APSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred -------cCccccccccCCCceEEEecCCCceEEEEEe
Confidence 11122223455554 4677888999999986
No 175
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-16 Score=144.23 Aligned_cols=242 Identities=14% Similarity=0.214 Sum_probs=141.6
Q ss_pred ccCCCCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|...|.+++|+|..+ ++..++.+.+|+|.|+.+. ...........+++++|.-++.++|+.|..+|.|
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheeccCCceeeeeccCCcceeEEeccCceE
Confidence 446889999999999766 7888899999999999886 2223333348899999999888999999999999
Q ss_pred EEEeCCCCe-eeeEEee--ccceeEEEEeCCC-----CCceEEeecCCCcccCCCCeEEEEEccCC-Ccceeee-ccCCC
Q 042883 404 TIWDVTTSQ-SVMEYEE--HEKRAWSVDFSCT-----EPSMLVSGSDDCKVGSADHHIHYYDLRNI-SQPLHVF-NGHKK 473 (597)
Q Consensus 404 ~iwd~~~~~-~~~~~~~--~~~~v~~~~~~~~-----~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~ 473 (597)
.|||++..+ .+..+.+ ...+|..++..+. .+.+++....+ +..|.+... +.+...+ .+..+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~---------l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV---------LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh---------hhhhhhhccccCCCcccccCCCc
Confidence 999997643 2222211 2234554444331 23333333321 456665431 1111111 12345
Q ss_pred ceEEEEecCC--CeEEEeeCCCc------EE-EEEcCCCcceeeee-CCCC-c------eeEEEEeecCCEEEE-EeCCC
Q 042883 474 AVSYVKFLSN--NELASASTDSS------LR-LWDVKENLPLHTFR-GHTN-E------KNFVGLTVNNEYIAC-GSETN 535 (597)
Q Consensus 474 ~v~~v~~~~~--~~l~s~~~d~~------v~-iwd~~~~~~~~~~~-~~~~-~------v~~v~~s~~g~~l~~-~~~d~ 535 (597)
...++.+++. ..|++.-.+.+ |- --|.++|.++...+ ++.+ . -..+.-.++.++|+. |+..+
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 5666666664 33444333211 10 01222233332211 1111 0 011222345555554 45567
Q ss_pred cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc-cCC-CeEEEecCcccEEEEEec
Q 042883 536 EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK-SDS-PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 536 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~-~~l~s~~~dg~v~iwd~~ 596 (597)
.+.+||..+...+.++.+ ..+|.+++.. -+| .+|++- .|..++||..+
T Consensus 412 ~lil~D~~s~evvQ~l~~------------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLAL------------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred eeEEeccchhheeeeccc------------CcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 899999999999998887 5678888753 344 455544 46678888754
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=7.3e-18 Score=158.14 Aligned_cols=207 Identities=15% Similarity=0.200 Sum_probs=164.2
Q ss_pred CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeec
Q 042883 341 DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEH 420 (597)
Q Consensus 341 ~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 420 (597)
.+.|+.++.||.+.|.+-... .......|.+.+.+-.|+| +|.-|++++.||.|++|. ++|-...++...
T Consensus 75 ~d~~~i~s~DGkf~il~k~~r--------VE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~ 144 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSAR--------VERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN 144 (737)
T ss_pred cceEEEEcCCceEEEecccch--------hhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhc
Confidence 457888899999999875543 2222335788999999999 788999999999999998 567666666566
Q ss_pred cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEE
Q 042883 421 EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWD 499 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd 499 (597)
..+|++++|.|+.++++.+.+ +.+.|=-+.. ...+...++|.+-|.++.|++. +.+++|+.|-..+|||
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g---------~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQG---------GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD 214 (737)
T ss_pred CceeEEEEECCCCCceEEecC---------CeEEEeeccc-ccceeEEeccCcEEEEeecCccccceeecCCceeEEeec
Confidence 789999999997777777654 3466666665 4556677889999999999999 8999999999999999
Q ss_pred cCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC
Q 042883 500 VKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP 579 (597)
Q Consensus 500 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 579 (597)
.. |..++.-..|..+|++++|.|+ ..++.++. ++++ +..+ ..+.|..++||+||.
T Consensus 215 ~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p----------~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 215 AQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSP----------RVGSIFNLSWSADGT 269 (737)
T ss_pred cc-CcccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCC----------CccceEEEEEcCCCc
Confidence 65 7788888889999999999999 66666654 3333 1111 167799999999999
Q ss_pred eEEEecCcccEEE
Q 042883 580 TMLTANRKGAIKV 592 (597)
Q Consensus 580 ~l~s~~~dg~v~i 592 (597)
.++.|...|.|.+
T Consensus 270 Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 270 QATCGTSTGQLIV 282 (737)
T ss_pred eeeccccCceEEE
Confidence 9999999988754
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.1e-17 Score=145.39 Aligned_cols=201 Identities=14% Similarity=0.279 Sum_probs=162.9
Q ss_pred CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
++..++++..|+. +.++|.+.+-|.+..|||+.++ ...........|...|+.|+|...+.++|++.+.||+|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~----~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRm 223 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG----VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRM 223 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeec----cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEE
Confidence 5778999999987 6788999999999999999886 1123355677899999999999866789999999999999
Q ss_pred EeCCCCeeeeEEee---ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 406 WDVTTSQSVMEYEE---HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 406 wd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
||++.......+.. ...+...++|++++.+++++-..|.. .|.|.|+|.+..++..+.+|.+.|++++|.|
T Consensus 224 FDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~------~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN------KVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred EEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc------eEEEEEecCCCcceehhhcCcccccceEecC
Confidence 99987655444332 24578899999999999998876543 5999999999999999999999999999999
Q ss_pred C--CeEEEeeCCCcEEEEEcCCC------cceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEE
Q 042883 483 N--NELASASTDSSLRLWDVKEN------LPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFV 539 (597)
Q Consensus 483 ~--~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~i 539 (597)
. ..|.++|.|..+.|||+... .++..+. -.+.|+.+.|++. +.+|+++.. +.+.|
T Consensus 298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred CCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 8 78999999999999999752 2333343 4678999999975 678877743 44433
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=7.2e-16 Score=157.43 Aligned_cols=245 Identities=26% Similarity=0.420 Sum_probs=194.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCC-CceeEEEE-ecCCCC-EEEEeeC-C
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTR-SKLSCLSW-NKYTKN-LIASSDY-D 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~-~~~~~~-~l~s~~~-d 400 (597)
...|...|.++.|.+.+..++.++.|+.+.+|+..... .......... ..+..+.+ .+ ++. .++..+. |
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d 133 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE------KLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLD 133 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc------eeEEEEeccCCCceeeEEEECC-CcceEEeccCCCC
Confidence 45789999999999999999999999999999998761 0111111212 35667777 66 344 5555444 9
Q ss_pred CcEEEEeCCC-CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 401 GIVTIWDVTT-SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 401 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
+.+.+|+... ......+..|...|..++|+| ++..+++++. .++.+++|++.. ...+..+.+|...|..++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~ 205 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSS------LDGTIKLWDLRT-GKPLSTLAGHTDPVSSLA 205 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCC------CCCceEEEEcCC-CceEEeeccCCCceEEEE
Confidence 9999999987 788888889999999999999 6667777663 245599999997 678888888999999999
Q ss_pred ecCCC--eEEEeeCCCcEEEEEcCCCccee-eeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc-ccccccCC
Q 042883 480 FLSNN--ELASASTDSSLRLWDVKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP-AASHRFGS 555 (597)
Q Consensus 480 ~~~~~--~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~ 555 (597)
|+|++ .+++++.|+.|++||...+..+. .+.+|.... ...|++++.++++++.|+.+++|+...... .... .
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~-- 281 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-S-- 281 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-e--
Confidence 99884 44455999999999998787777 678887775 448999998889999999999999987665 2222 1
Q ss_pred CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|...|.++.|+|++..+++++.|+.+.+||+.
T Consensus 282 --------~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 282 --------GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred --------cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 347889999999988888889989999999865
No 179
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2e-18 Score=159.20 Aligned_cols=228 Identities=12% Similarity=0.186 Sum_probs=187.8
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS 411 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 411 (597)
.+.+.|+.+|..++.|+..|.|-.+|..+. .......-...|..+.|.. +..++|++- ...++|||- .|
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--------~L~~Ei~v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~-~G 200 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--------KLHFEINVMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDN-NG 200 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccc--------eeeeeeehhhhhhhhhhhc-chHHHHhhh-hceEEEecC-CC
Confidence 467889999999999999999999999887 4445555567889999987 567777765 678999994 56
Q ss_pred eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEee
Q 042883 412 QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS 490 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~ 490 (597)
..+..++.| ..|..+.|.| -..+|++++..| .++.-|+.. ++.+..+....+.+..+.-+|- ..+-+|.
T Consensus 201 tElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G-------~L~Y~DVS~-GklVa~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLP-YHFLLVAASEAG-------FLKYQDVST-GKLVASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred cEEeehhhc-Cchhhhcccc-hhheeeecccCC-------ceEEEeech-hhhhHHHHccCCccchhhcCCccceEEEcC
Confidence 666666554 4699999999 778888887544 489999998 8888888878888899998998 6677899
Q ss_pred CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceE
Q 042883 491 TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFIS 570 (597)
Q Consensus 491 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 570 (597)
..|+|.+|.....+++..+..|.++|.+|++.++|+|++++|.|..++|||+++-..+.++.. ..+..
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------------p~~a~ 338 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------------PHPAS 338 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------------CCCcc
Confidence 999999999999999999999999999999999999999999999999999998876666653 23567
Q ss_pred EEEEccCCCeEEEecCcccEEEEE
Q 042883 571 AVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 571 ~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.+++|..| +++.+....|.||.
T Consensus 339 ~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 339 NLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred cccccccc--ceeeecCCeeeeeh
Confidence 78888666 44445555788884
No 180
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1e-15 Score=135.22 Aligned_cols=237 Identities=17% Similarity=0.248 Sum_probs=166.4
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC------CcEE
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD------GIVT 404 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d------g~i~ 404 (597)
...+++|+.|...+++|..+| .+||+.+--..... .......-.+.-+-|- .+-+.++|+.+ +.|.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~-----r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS-----RQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh-----hccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEE
Confidence 345599999999999888665 89999865311000 0000011122222232 12233344433 4799
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--CCCceEEEEecC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--HKKAVSYVKFLS 482 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~ 482 (597)
|||-....++.++ ....+|.++.+.+ ..+++.- .+.|+||......+.+..+.. ....+.++.-+.
T Consensus 79 IWDD~k~~~i~el-~f~~~I~~V~l~r---~riVvvl--------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 79 IWDDLKERCIIEL-SFNSEIKAVKLRR---DRIVVVL--------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred EEecccCcEEEEE-EeccceeeEEEcC---CeEEEEe--------cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 9996666777776 4578899999985 3333332 456999998865566665543 223344544333
Q ss_pred C-CeEEE-eeCCCcEEEEEcCCCcc--eeeeeCCCCceeEEEEeecCCEEEEEeCCCc-EEEEEccCCccccccccCCCC
Q 042883 483 N-NELAS-ASTDSSLRLWDVKENLP--LHTFRGHTNEKNFVGLTVNNEYIACGSETNE-VFVYHKAISKPAASHRFGSDA 557 (597)
Q Consensus 483 ~-~~l~s-~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~ 557 (597)
+ ..|+- |-.-|.|+|-|+...+. ...+.+|.+.|.+++++-+|..||++|..|+ |+|||..+|..+..+..|..
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d- 225 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD- 225 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-
Confidence 3 33443 44668999999987554 4778899999999999999999999999997 79999999999998887653
Q ss_pred CCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 558 DHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...|.+++|||++.+|++++..|+|+||.+.
T Consensus 226 --------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 226 --------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred --------hheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 6789999999999999999999999999874
No 181
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=147.38 Aligned_cols=200 Identities=14% Similarity=0.207 Sum_probs=162.1
Q ss_pred CCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC--CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 377 TRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT--SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 377 ~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
..++|++|.|+| ...++++++.||.++||.+.. ...++.+.-...+|....|.|++...+++++.-. .++
T Consensus 212 s~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk-------y~y 283 (514)
T KOG2055|consen 212 SHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK-------YLY 283 (514)
T ss_pred CcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccce-------EEE
Confidence 357899999999 789999999999999998864 3456666667789999999995444888877544 489
Q ss_pred EEEccCCCc--ceeeeccCC-CceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEE
Q 042883 455 YYDLRNISQ--PLHVFNGHK-KAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 455 i~d~~~~~~--~~~~~~~~~-~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 530 (597)
.||+.+ .+ .+....++. ..+....++++ ++|+..|..|.|.+....+++.+.+++. .+.|..++|+.||+.|++
T Consensus 284 syDle~-ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 284 SYDLET-AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLA 361 (514)
T ss_pred Eeeccc-cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEE
Confidence 999986 32 233333443 35667778888 8899999999999999999999999874 577899999999999999
Q ss_pred EeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 531 GSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+.+|.|++||++....+..+.... .-.=++++.+++|.|||+|+..|.|-|||..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G----------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDG----------SVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecC----------ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 9999999999999998877766421 2234667788999999999999999999954
No 182
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=2.6e-16 Score=139.29 Aligned_cols=209 Identities=16% Similarity=0.275 Sum_probs=156.1
Q ss_pred CCCCcEEEEEEcCC----CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 327 HAANIISSIEFDRD----DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 327 ~~~~~v~~i~~~~~----~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.|....+.++|+-+ ..++|+|+.-|.|+|.|+..+ .......+|...|..+.+.|...+++++++.|..
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s 159 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS 159 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-------hhccceeccCccchhhhcCCCCCcEEEEecCCce
Confidence 47788889999763 357888999999999999877 3444566889999999999988899999999999
Q ss_pred EEEEeCCCCeeeeEEe---eccceeEEEEeCCCCCceEEeecCCCcc---------------------------------
Q 042883 403 VTIWDVTTSQSVMEYE---EHEKRAWSVDFSCTEPSMLVSGSDDCKV--------------------------------- 446 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~~--------------------------------- 446 (597)
|++|++++..++..|. +|.+.|.++.|++ ++.+|+++|.|..+
T Consensus 160 vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 160 VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred EEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 9999999999988874 6999999999999 88899999977763
Q ss_pred ----------------------------cCCCCeEEEEEccCCCc-------------ceeeeccCCCceEEEEecCC--
Q 042883 447 ----------------------------GSADHHIHYYDLRNISQ-------------PLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 447 ----------------------------~~~d~~i~i~d~~~~~~-------------~~~~~~~~~~~v~~v~~~~~-- 483 (597)
.+.++.|..|..-.... .+..+.-....|+-+.|.-|
T Consensus 239 ~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 22333344443310000 01111112233445554434
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcce--eeee--CCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 484 -NELASASTDSSLRLWDVKENLPL--HTFR--GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~--~~~~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
..|+.|...|.|.+||++...+. .++. .....|...+|+.||.+|+....|+.|.-||..
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 55888999999999999986653 1222 224468889999999999999999999999853
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.5e-16 Score=160.82 Aligned_cols=254 Identities=15% Similarity=0.201 Sum_probs=177.4
Q ss_pred CCcEEEEEEcC--CCCEEEEeeCCCcEEEEecccCc-cCCc--cCCCCce--EecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 329 ANIISSIEFDR--DDELFASAGVSRRIKIFEFSSVV-NEPR--DVHYPMV--EMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 329 ~~~v~~i~~~~--~~~~l~t~~~d~~v~iw~~~~~~-~~~~--~~~~~~~--~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
...|+.+.+-. |..++++|+.||.|+||+-.... .... ....... ..+..+.=.-++|....|. |++++.-.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVR 1187 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCee
Confidence 45788888865 55689999999999999754331 1100 0000000 0011111134678875454 44544478
Q ss_pred cEEEEeCCCCeeeeEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc--ceeeeccCCCc--eE
Q 042883 402 IVTIWDVTTSQSVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ--PLHVFNGHKKA--VS 476 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~--v~ 476 (597)
.|+|||......+..+. +....|+++.-+...++++++|-.||. |++||.|.... .+...+.|+.. |.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs-------vRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS-------VRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCc-------eEEeecccCCccccceeecccCCcccce
Confidence 99999998877776664 345568888777657789998886555 99999987433 67778889887 99
Q ss_pred EEEecCC--CeEEEeeCCCcEEEEEcCCCcce--eeeeCCC--C-ceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 477 YVKFLSN--NELASASTDSSLRLWDVKENLPL--HTFRGHT--N-EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 477 ~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~--~-~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
.+.+.+. +.|++|+.||.|++||+|..... .++..|. + .++++..+++..+||+|+. +.|.||++.......
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc
Confidence 9999886 67999999999999999984222 2222332 3 5899999999999999988 999999986544333
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
....+.... .-.+.+.+++|+|-.-.+|+|+.|.+|.||...
T Consensus 1340 ~k~n~~F~~-----q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1340 IKYNPGFMG-----QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cccCccccc-----CcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 222222111 125567999999999999999999999999753
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=4e-16 Score=155.56 Aligned_cols=222 Identities=18% Similarity=0.261 Sum_probs=165.4
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCee--eeE----Eeeccce
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS--VME----YEEHEKR 423 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~----~~~~~~~ 423 (597)
++.+.||++... ..+...+.....|++++|+|.+.++++.|..+|.|.+||++.+.. ... ...|..+
T Consensus 221 ~~~~~vW~~~~p-------~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 221 DGVLLVWSLKNP-------NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred CceEEEEecCCC-------CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 347999999875 455666677889999999999999999999999999999987654 222 2358899
Q ss_pred eEEEEeCCCCC-ceEEeecCCCcccCCCCeEEEEEccCCCcceeee-----c------cCCCceEEEEecCC--CeEEEe
Q 042883 424 AWSVDFSCTEP-SMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-----N------GHKKAVSYVKFLSN--NELASA 489 (597)
Q Consensus 424 v~~~~~~~~~~-~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-----~------~~~~~v~~v~~~~~--~~l~s~ 489 (597)
++.+.|..+.. .-|++++.||. |..|+++.-..+.... . .....+++++|.+. +.|++|
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~-------i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGS-------ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCc-------EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence 99999976322 33777775555 9999988633322221 1 12246889999887 789999
Q ss_pred eCCCcEEEEEcCCC--------cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc-CCccccccccCCCCCCC
Q 042883 490 STDSSLRLWDVKEN--------LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA-ISKPAASHRFGSDADHV 560 (597)
Q Consensus 490 ~~d~~v~iwd~~~~--------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~ 560 (597)
+..|.|.--+.... +....+..|.++|+.+.++|-+..++..+.|.+|+||.-. ...++..+..
T Consensus 367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~------- 439 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS------- 439 (555)
T ss_pred cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-------
Confidence 99999887443321 2233556788999999999987655555559999999987 6666666553
Q ss_pred cCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~~ 596 (597)
+...|++++|||... .|+++..||.|.|||+.
T Consensus 440 ----~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 440 ----SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ----ccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 255699999999775 56778889999999974
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=1.2e-16 Score=145.29 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=165.2
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCcc----C-----CccCCCCceEecCCCceeEEEEecCCCCE
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVN----E-----PRDVHYPMVEMPTRSKLSCLSWNKYTKNL 393 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~----~-----~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 393 (597)
..+.+|...|+++.|+|+|+.||+|+.+|.|.+|....-.. . ...........+|...|+.++|+| ++.+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~ 137 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNF 137 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCce
Confidence 34567999999999999999999999999999998762100 0 001112234456889999999999 7999
Q ss_pred EEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------
Q 042883 394 IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV--------------------------- 446 (597)
Q Consensus 394 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~--------------------------- 446 (597)
+++|+.|+.+++||+..|.....+..|...|..++|.| -+.++++-+.|...
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 99999999999999999999999999999999999999 77888888777733
Q ss_pred ---------------------------------------c-CCCCeEEEEEccCCCcceeeeccCCCceEEEEecC----
Q 042883 447 ---------------------------------------G-SADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS---- 482 (597)
Q Consensus 447 ---------------------------------------~-~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~---- 482 (597)
+ ..-+..++|+-..-.++...+.+...++..+.++|
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 0 11223344443333344455555555555555544
Q ss_pred --------------CCe-EEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 483 --------------NNE-LASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 483 --------------~~~-l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
-+. +++++ .+.|+|||..+..++.... .|-..++.++|++||.+++..+.||...+..+...+
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 122 34444 4589999999888887765 578899999999999999999999988877666543
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=9.4e-17 Score=150.79 Aligned_cols=184 Identities=17% Similarity=0.320 Sum_probs=149.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+..|.+.|.+-.|+|+|.-|++++.||.|++|.-.+. ..........+|+|++|.|++++.+++.+ +.+.
T Consensus 100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--------LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~ 169 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--------LRSTVVQNEESIRCARWAPNSNSIVFCQG--GHIS 169 (737)
T ss_pred hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--------HHHHHhhcCceeEEEEECCCCCceEEecC--CeEE
Confidence 3469999999999999999999999999999987654 22223345678999999997777777765 5677
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN 484 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~ 484 (597)
|=.+.....+-..+.|.+-|.++.|++ .++++++||.|.. .++||-. +..+..-..|..+|++++|+|+.
T Consensus 170 IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~k-------fKvWD~~--G~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 170 IKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFR-------FKIWDAQ--GANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred EeecccccceeEEeccCcEEEEeecCc-cccceeecCCcee-------EEeeccc--CcccccCChhccceeeeeecccc
Confidence 777777777788899999999999999 8899999997666 8999987 67777777899999999999996
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEE
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVY 540 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 540 (597)
.++.+|.. ++++ -....+.|..++||+||..+++|+..|.+.+-
T Consensus 240 ~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 DYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 66666653 5551 12345678899999999999999999977653
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=1.4e-15 Score=134.37 Aligned_cols=204 Identities=14% Similarity=0.133 Sum_probs=159.2
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCcc-CCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRD-VHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
..+|+|.+|++|+..+|++..+..|.||..... . .........|...|++|+|+| ..+.|++++.|..-+||.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-----~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-----DLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC-----CCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 468999999999999999999999999998765 1 122233446889999999999 788999999999999999
Q ss_pred C-CCC--eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc---eeeeccCCCceEEEEec
Q 042883 408 V-TTS--QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP---LHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 408 ~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~v~~~ 481 (597)
. ..+ ++...+..++..++++.|+| ..+.|++||.... |.||-......- -.+-+.+.+.|.++.|+
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~-------isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARL-------ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccE-------EEEEEEecccceehhhhhCCccccceeeeecc
Confidence 8 333 34455567889999999999 8889999886554 777766542111 12234567889999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcCC------------------CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 482 SN-NELASASTDSSLRLWDVKE------------------NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~------------------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
|+ -.+++|+.|+..+||..-- |..+..+....+.+..+.|+|+|..|+-.+.|+.+.+-|.
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99 5578899999999997421 2334444455678999999999999999999999999997
Q ss_pred cCCc
Q 042883 543 AISK 546 (597)
Q Consensus 543 ~~~~ 546 (597)
....
T Consensus 236 ~~p~ 239 (361)
T KOG1523|consen 236 AGPS 239 (361)
T ss_pred CCCc
Confidence 7654
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-16 Score=149.45 Aligned_cols=219 Identities=17% Similarity=0.266 Sum_probs=162.5
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC-CCEEEEeeCCC
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT-KNLIASSDYDG 401 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~-~~~l~s~~~dg 401 (597)
.++.||.+.|+|+.|+.+|.+|++|+.|-.+.|||.... .....+..+|...|.++.|-|.. +.++++|+.|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc------ceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 456799999999999999999999999999999998743 12234556799999999999954 55788999999
Q ss_pred cEEEEeCCCC----------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee----
Q 042883 402 IVTIWDVTTS----------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---- 467 (597)
Q Consensus 402 ~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~---- 467 (597)
.|++||+... .....+..|...|..|+..|.+++.|-+++.||+ |+-||++.+..+-..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-------irQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-------IRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-------eeeecccCCccCCcccccc
Confidence 9999999742 2334456788999999999977799999986555 999999963222111
Q ss_pred -----eccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCC--------Cc----------ceeee-eCCC--------
Q 042883 468 -----FNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKE--------NL----------PLHTF-RGHT-------- 513 (597)
Q Consensus 468 -----~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~--------~~----------~~~~~-~~~~-------- 513 (597)
+....-...++.++|. .+|++|+.|-.+++||.+. +. ++.-+ .+|.
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 1111234578889998 7899999999999999542 11 12222 1222
Q ss_pred C---ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 514 N---EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 514 ~---~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
. .++.++|+|+|.-|++.-....|++||+..++....+..+
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 1 2456889999988777766678999999987766554443
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.1e-14 Score=129.44 Aligned_cols=194 Identities=19% Similarity=0.296 Sum_probs=148.4
Q ss_pred CcEEEEEEcCCCCEEEEeeCC--CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 330 NIISSIEFDRDDELFASAGVS--RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-.|--+-|+. .++|..+.+ +.++++++... ..+........|.+|.++. +.|++.-. ..|+|||
T Consensus 47 ~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~--------~~ICe~~fpt~IL~VrmNr---~RLvV~Le-e~IyIyd 112 (391)
T KOG2110|consen 47 VSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK--------TTICEIFFPTSILAVRMNR---KRLVVCLE-ESIYIYD 112 (391)
T ss_pred eEEEEeeccc--ceeEEEecCCCceEEEEEcccC--------ceEEEEecCCceEEEEEcc---ceEEEEEc-ccEEEEe
Confidence 3455666764 355554443 45888887754 5556666788999999985 34555554 4599999
Q ss_pred CCCCeeeeEEee---ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 408 VTTSQSVMEYEE---HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 408 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+++.+.+.++.. +...+.++++++ .+.+++--+. ...|.|.+||..+ -+++..+..|.+.+.+++|+++
T Consensus 113 I~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s-----~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G 185 (391)
T KOG2110|consen 113 IKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGS-----TTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDG 185 (391)
T ss_pred cccceeehhhhccCCCccceEeeccCC-CCceEEecCC-----CCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCC
Confidence 999998888754 344566666665 4455554321 1357799999997 8889999999999999999999
Q ss_pred CeEEEeeCCCc-EEEEEcCCCcceeeeeCC--CCceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 484 NELASASTDSS-LRLWDVKENLPLHTFRGH--TNEKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 484 ~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
.+|+|+|..|+ |+||++.+|+.++.|+-. ...|++++|+|++.+|++.|..++|+||.+..
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 77999999998 789999999999999733 23578999999999999999999999999865
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=7.4e-15 Score=143.60 Aligned_cols=243 Identities=10% Similarity=0.087 Sum_probs=155.5
Q ss_pred CCCcEEEEEEcCCCCEEEEee-CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee-CCCcEEE
Q 042883 328 AANIISSIEFDRDDELFASAG-VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-YDGIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~dg~i~i 405 (597)
+.+....++++|++++|++++ .++.|.+|++... ... ..............++|+| +++++++++ .++.|.+
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l----~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v 106 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GAL----TFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSV 106 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-Cce----EEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEE
Confidence 334567889999999887664 4788999998632 111 0111112233567899999 566666654 5889999
Q ss_pred EeCCCC-e---eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee----eec-cCCCceE
Q 042883 406 WDVTTS-Q---SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH----VFN-GHKKAVS 476 (597)
Q Consensus 406 wd~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~----~~~-~~~~~v~ 476 (597)
|++.+. . .+..+. +...+..++++| ++.++++++. .++.|.+||+...+.... ... .......
T Consensus 107 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 107 SPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred EEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 998642 2 222222 234567789999 6666554432 345699999986332210 111 1234467
Q ss_pred EEEecCC-CeEEEeeC-CCcEEEEEcCC--Cc--ceeeeeCC------CCceeEEEEeecCCEEEEEeC-CCcEEEEEcc
Q 042883 477 YVKFLSN-NELASAST-DSSLRLWDVKE--NL--PLHTFRGH------TNEKNFVGLTVNNEYIACGSE-TNEVFVYHKA 543 (597)
Q Consensus 477 ~v~~~~~-~~l~s~~~-d~~v~iwd~~~--~~--~~~~~~~~------~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~ 543 (597)
.++|+|+ .+++++.. ++.|.+||+.. ++ .+..+... ......+.|+|+|++++++.. ++.|.+|++.
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 8999999 66666654 89999999973 22 23333221 112235889999999988854 7899999986
Q ss_pred CCcc----ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC-cccEEEEEec
Q 042883 544 ISKP----AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR-KGAIKVLVLA 596 (597)
Q Consensus 544 ~~~~----~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~-dg~v~iwd~~ 596 (597)
.... +..... ......++|+|+|++|++++. +++|.||+++
T Consensus 259 ~~~~~~~~~~~~~~------------~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 259 EDGSVLSFEGHQPT------------ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEeEEEec------------cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 5432 111111 124567899999999988764 8999999874
No 191
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=3.3e-16 Score=147.35 Aligned_cols=197 Identities=14% Similarity=0.198 Sum_probs=141.9
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE 419 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 419 (597)
.+--++.|-.-|.|.+.|.....-.. ............++++.|-|.+...++.+-.+|.+++||..-
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sk---lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~--------- 251 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSK---LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI--------- 251 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHH---hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc---------
Confidence 45557778778889888865421000 000111123578999999997788888899999999998721
Q ss_pred ccceeEEEEe--CCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEE
Q 042883 420 HEKRAWSVDF--SCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLR 496 (597)
Q Consensus 420 ~~~~v~~~~~--~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~ 496 (597)
....+...| .+ ++..+. |..|.-.....++..+.--.+.|...+|+|| .+|++.+.||.++
T Consensus 252 -~~~~t~p~~~~~k-~~~~f~--------------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLR 315 (636)
T KOG2394|consen 252 -VCGATAPSYQALK-DGDQFA--------------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLR 315 (636)
T ss_pred -cccCCCCcccccC-CCCeeE--------------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEE
Confidence 111111111 12 333333 3333322223555555545568999999999 7899999999999
Q ss_pred EEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc
Q 042883 497 LWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 497 iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 575 (597)
|||..+.+.+..++..-+...+++|||||+||++||.|.-|.||.+..++.+..-. +|..+|+.|+|+
T Consensus 316 vF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-----------GHkSWVs~VaFD 383 (636)
T KOG2394|consen 316 IFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-----------GHKSWVSVVAFD 383 (636)
T ss_pred EeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-----------ccccceeeEeec
Confidence 99999888887777777889999999999999999999999999998888776543 689999999998
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.9e-16 Score=143.14 Aligned_cols=194 Identities=17% Similarity=0.249 Sum_probs=150.4
Q ss_pred eEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC
Q 042883 382 SCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI 461 (597)
Q Consensus 382 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~ 461 (597)
..++|+. ++..+++|+.||.+|||+..+...+.....|...|.++.|+| ++.++++-+.|. .+||+.++
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d~--------~~VW~~~~- 216 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGADS--------ARVWSVNT- 216 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCCc--------eEEEEecc-
Confidence 6789998 789999999999999999888787777788999999999999 999999988763 79999998
Q ss_pred Ccceeeecc--CCCceEEEEecCCC-----eEEE-eeCCCcEEEEEcCCCcc-----eeeeeCCCCceeEEEEeecCCEE
Q 042883 462 SQPLHVFNG--HKKAVSYVKFLSNN-----ELAS-ASTDSSLRLWDVKENLP-----LHTFRGHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 462 ~~~~~~~~~--~~~~v~~v~~~~~~-----~l~s-~~~d~~v~iwd~~~~~~-----~~~~~~~~~~v~~v~~s~~g~~l 528 (597)
+..+..... .......+.|+.++ ++++ -...+.|+.||+..+.. ..+.......|++++.+++|+++
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 555554432 22345566776664 3333 33445677776654222 11222234478999999999999
Q ss_pred EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 529 ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 529 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+.|+.||.|.||+..+.+.+...+. .|...|+++.|+|+.+++++.+.|..+.|..+.
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~----------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKE----------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehh----------hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999999999988777766553 478899999999999999999999988887653
No 193
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2e-15 Score=143.87 Aligned_cols=212 Identities=16% Similarity=0.223 Sum_probs=165.2
Q ss_pred CceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc----
Q 042883 371 PMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---- 446 (597)
Q Consensus 371 ~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---- 446 (597)
.....+|.+.|.+|...| .+..|++|+.||+|+||.+.+|.++.++. ..+.|.+|+|+|.....++++..+..+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345668999999999999 89999999999999999999999999885 467899999999544333333333322
Q ss_pred ----------------------cCCCCeEEEEEccC---CCcceeeeccCCCceEEEEecCC-CeEEEeeCC---CcEEE
Q 042883 447 ----------------------GSADHHIHYYDLRN---ISQPLHVFNGHKKAVSYVKFLSN-NELASASTD---SSLRL 497 (597)
Q Consensus 447 ----------------------~~~d~~i~i~d~~~---~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d---~~v~i 497 (597)
...++.+..|.-.. ...-+.....|...|..|.|+.. .+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 33455677776542 11224455568899999999998 777775543 46889
Q ss_pred EEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccC
Q 042883 498 WDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSD 577 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~ 577 (597)
+++...+...-|....+.|..+.|+|...+|++++. ..|+|||+.....+..+..+ ...|..++.+|.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-----------~kwiS~msihp~ 618 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-----------SKWISSMSIHPN 618 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-----------CeeeeeeeecCC
Confidence 998876655555555677899999999999888864 67999999887777766654 678999999999
Q ss_pred CCeEEEecCcccEEEEEec
Q 042883 578 SPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 578 ~~~l~s~~~dg~v~iwd~~ 596 (597)
|.-|+.|+.|+.+..||++
T Consensus 619 GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred CCeEEEecCCCeeEEEEcc
Confidence 9999999999999999985
No 194
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=146.86 Aligned_cols=256 Identities=16% Similarity=0.272 Sum_probs=192.0
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC-CCEEEEeeCCC
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT-KNLIASSDYDG 401 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~-~~~l~s~~~dg 401 (597)
..+-.|.+.|..+.|+..|..|++|+.|..|.+||..... .......+|...|..-.|-|.. ...+++++.||
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceeccccC
Confidence 3456899999999999999999999999999999998761 2222334677778878888754 45788999999
Q ss_pred cEEEEeCCCCee---eeEEeeccceeEEEEeCCCCCceEEeecCCCcc--------------------------------
Q 042883 402 IVTIWDVTTSQS---VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-------------------------------- 446 (597)
Q Consensus 402 ~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-------------------------------- 446 (597)
.|++=.+..... ...+..|.++|.-++.-|....-|.+++.|+.+
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 999876643222 344567888899999988888888888888877
Q ss_pred ----------cCCCCeEEEEEccCCCc-----ceeeecc------CCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC--
Q 042883 447 ----------GSADHHIHYYDLRNISQ-----PLHVFNG------HKKAVSYVKFLSN-NELASASTDSSLRLWDVKE-- 502 (597)
Q Consensus 447 ----------~~~d~~i~i~d~~~~~~-----~~~~~~~------~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~-- 502 (597)
|+.|-.+++||.+...+ .+..+.. ..-.|++++|+.+ +.|+++-.|-.|++|.-..
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 55666677777664211 1222221 2246899999977 7777777788899995432
Q ss_pred C----------cceee-eeCCCC--ceeEEE-EeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcc
Q 042883 503 N----------LPLHT-FRGHTN--EKNFVG-LTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYF 568 (597)
Q Consensus 503 ~----------~~~~~-~~~~~~--~v~~v~-~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 568 (597)
| ..+.. ++||.+ .|..+- |-|...|+++|+.-|.|.||+..+++.+..+... ...
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-----------r~V 438 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-----------RHV 438 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-----------cce
Confidence 2 12233 678866 455554 4677889999999999999999999988877643 338
Q ss_pred eEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 569 ISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 569 i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
|+++.=+|--..||+.|-|..|+||-.
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecC
Confidence 999999999999999999999999964
No 195
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=2e-14 Score=146.67 Aligned_cols=240 Identities=23% Similarity=0.417 Sum_probs=185.0
Q ss_pred CcEEEEEE-cCCCC-EEEEeeC-CCcEEEEeccc-CccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-CCcEE
Q 042883 330 NIISSIEF-DRDDE-LFASAGV-SRRIKIFEFSS-VVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-DGIVT 404 (597)
Q Consensus 330 ~~v~~i~~-~~~~~-~l~t~~~-d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-dg~i~ 404 (597)
..+..+.+ ++++. .++..+. |+.+.+|+... . ........|...|..++|+| ++..+++++. |+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG-------KLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIK 181 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCC-------eEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceE
Confidence 36777777 78777 5555444 89999999986 2 24445667888999999999 5668888875 99999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCc-eEEeecCCCcccCCCCeEEEEEccCCCccee-eeccCCCceEEEEecC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQPLH-VFNGHKKAVSYVKFLS 482 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~v~~~~ 482 (597)
+|++..+..+..+.+|...|.+++|+| ++. ++++++. |+.|++||... +..+. .+.+|.... ...|+|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-------d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~ 251 (466)
T COG2319 182 LWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSS-------DGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSP 251 (466)
T ss_pred EEEcCCCceEEeeccCCCceEEEEEcC-CcceEEEEecC-------CCcEEEEECCC-CcEEeeecCCCCcce-eEeECC
Confidence 999998888888988999999999998 555 5555464 44589998885 55555 577787765 437899
Q ss_pred C-CeEEEeeCCCcEEEEEcCCCcc-eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 483 N-NELASASTDSSLRLWDVKENLP-LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
+ ..+++++.|+.+++||.+.... +..+.+|...+.++.|+|++..+++++.|+.+.+||..+.........
T Consensus 252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------- 324 (466)
T COG2319 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL------- 324 (466)
T ss_pred CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeee-------
Confidence 9 5888999999999999987664 445567888999999999888888888898899998887766555440
Q ss_pred cCcCCCcceEEEEEccCCCeEEEe-cCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTA-NRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~-~~dg~v~iwd~~ 596 (597)
..|...+..+.|.+++..++.+ ..|+.+.+|++.
T Consensus 325 --~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 325 --KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred --cccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 1235579999994332456555 688999999875
No 196
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.6e-15 Score=136.19 Aligned_cols=224 Identities=13% Similarity=0.157 Sum_probs=174.6
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC--CcEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD--GIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d--g~i~i 405 (597)
...+|..+... ...|++|..+|.+.+|....+... ..+.........+..+.-.+....++++|+.. ..+.|
T Consensus 104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h----ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH----SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred ccccccchhhc--CCEEEEEecCCcEEEEeccCCccc----cccceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence 34455555543 346888889999999998755111 12233333346677777777677888889988 88999
Q ss_pred EeCCCCeeeeEEeec---------cceeEEEEeCCCC--CceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc
Q 042883 406 WDVTTSQSVMEYEEH---------EKRAWSVDFSCTE--PSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA 474 (597)
Q Consensus 406 wd~~~~~~~~~~~~~---------~~~v~~~~~~~~~--~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 474 (597)
||+...+.+..-+.. .-.++++.|.+ + ...|++++.- +.+++||.+....|+..|.--..+
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~-------hqvR~YDt~~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRY-------HQVRLYDTRHQRRPVAQFDFLENP 249 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecc-------eeEEEecCcccCcceeEeccccCc
Confidence 999887655443321 23467789987 5 7889988854 459999999888999999888899
Q ss_pred eEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 475 VSYVKFLSN-NELASASTDSSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 475 v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
++++...|+ +.+++|..-|.+..||++.++.... +.+..+.++++..+|.+++++++|-|..|+|+|+.+.++++...
T Consensus 250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 999999999 8899999999999999999988777 88899999999999999999999999999999999988777655
Q ss_pred cCCCCCCCcCcCCCcceEEEEEccC
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKSD 577 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~~ 577 (597)
. ...++.|.+.++
T Consensus 330 v------------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 330 V------------KSRLTFILLRDD 342 (412)
T ss_pred h------------hccccEEEecCC
Confidence 4 445677776543
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-14 Score=121.50 Aligned_cols=238 Identities=16% Similarity=0.244 Sum_probs=160.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccC-----CccCCCCceE-ecCCCceeEEEEecCCCCEEEEeeC
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNE-----PRDVHYPMVE-MPTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~-----~~~~~~~~~~-~~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
.+|.++|+.++|. ..+|++|+ ||.|+=|........ .-....+... ...--.|+++-..|..+.+| .++.
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgG 134 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGG 134 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecC
Confidence 4799999999998 34666665 699999987654211 1111111111 11223588888999545544 4457
Q ss_pred CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc---------
Q 042883 400 DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--------- 470 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--------- 470 (597)
|+.++-||+++|+....+++|++.|.++.--. ...-+++|+.| |++++||.++ .+.+.++..
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~ED-------GtvRvWd~kt-~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAED-------GTVRVWDTKT-QKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCC-------ccEEEEeccc-cceeEEeccccChhhcCc
Confidence 99999999999999999999999999998854 55667788755 4599999998 666666532
Q ss_pred C-CCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 471 H-KKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 471 ~-~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
| ..+|.+++.+. ..++. +....+.+|.++..++...|.. ...+..+.|. ...++++|..+.|.-|.+. |....
T Consensus 206 ~~g~wigala~~e-dWlvC-GgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a 279 (325)
T KOG0649|consen 206 DWGKWIGALAVNE-DWLVC-GGGPKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQA 279 (325)
T ss_pred ccCceeEEEeccC-ceEEe-cCCCceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeec-cEEEE
Confidence 1 23466666433 34444 4456899999999888888763 4556677774 4567888888889999863 33333
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEE
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVL 593 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iw 593 (597)
..+++ ....++..|+... ++|-.++..+.+.|+
T Consensus 280 ~ip~~-----------s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 280 NIPVE-----------STACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eccCC-----------ccceeeecccCCceEEEEecccceeeeee
Confidence 33332 3345666665443 344456777777775
No 198
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.69 E-value=9.9e-18 Score=104.65 Aligned_cols=38 Identities=45% Similarity=1.114 Sum_probs=31.7
Q ss_pred cccccccccccccccccccccHHHHHHhhcCCC----CCCCC
Q 042883 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS----DCPCC 78 (597)
Q Consensus 41 C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~----~CP~C 78 (597)
||||+++|++||+|+|||+||+.||+++|.... .||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998653 49987
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.9e-15 Score=149.58 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=170.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEec-CCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNK-YTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~~l~s~~~dg~i~iw 406 (597)
...+...+.|+|=...++++...-.|+|||...+.. ..... ........|+.+.+-. ++..++++|+.||.|+||
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~---n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFD---NGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCce-ecccc---CCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 444677788999888899998888999999987611 11111 1112345788888643 456789999999999999
Q ss_pred eCC-----CCeeeeEEee-------ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-cCCC
Q 042883 407 DVT-----TSQSVMEYEE-------HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKK 473 (597)
Q Consensus 407 d~~-----~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~ 473 (597)
+-- ..+.+..+.+ ..+.-.-++|....|.++++|. -..|+|||... ...+..+. +...
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--------~r~IRIWDa~~-E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--------VRSIRIWDAHK-EQVVADIPYGSST 1209 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC--------eeEEEEEeccc-ceeEeecccCCCc
Confidence 742 1233333321 1111244678775566666553 23499999987 44444443 4455
Q ss_pred ceEEEEecCC--CeEEEeeCCCcEEEEEcCCCc---ceeeeeCCCCc--eeEEEEeecCCE-EEEEeCCCcEEEEEccCC
Q 042883 474 AVSYVKFLSN--NELASASTDSSLRLWDVKENL---PLHTFRGHTNE--KNFVGLTVNNEY-IACGSETNEVFVYHKAIS 545 (597)
Q Consensus 474 ~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~--v~~v~~s~~g~~-l~~~~~d~~i~iwd~~~~ 545 (597)
.|+++.-+-. +.|++|-.||.|++||.|... .+...+.|... |..+.+.+.|-- |++|+.||.|++||++..
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 6777754333 789999999999999998743 46677788877 899999987654 999999999999999985
Q ss_pred ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 546 KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.......... + .. -.+.++++..+++.+.+|+|+. +.|+||+++
T Consensus 1290 ~~e~~~~iv~---~--~~-yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1290 SKETFLTIVA---H--WE-YGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred cccccceeee---c--cc-cCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 2222111110 0 00 0225999999999999999998 999999975
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.1e-14 Score=145.50 Aligned_cols=263 Identities=13% Similarity=0.178 Sum_probs=174.0
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|.-.+++.++||+++++|+|..||.|.+|.-... ...........-|...|.+++|++ +|.+|++|+..|.+.+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS---SDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVL 277 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccc---ccccccceEEEecccccceeEEec-CCceEeecccceEEEE
Confidence 457777999999999999999999999999975431 012233445556889999999999 7999999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------------------
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV--------------------------------------- 446 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~--------------------------------------- 446 (597)
|.+.+++ .+-+..-.++|..+.++| ++.+.+....|..+
T Consensus 278 Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 278 WQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred EeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 9999887 455566778999999999 66665555555554
Q ss_pred -------cCCCCeEEEEEccCCCcceeeec-----cCC------CceEEEEecCC-CeEEEe--------eCCC--cEEE
Q 042883 447 -------GSADHHIHYYDLRNISQPLHVFN-----GHK------KAVSYVKFLSN-NELASA--------STDS--SLRL 497 (597)
Q Consensus 447 -------~~~d~~i~i~d~~~~~~~~~~~~-----~~~------~~v~~v~~~~~-~~l~s~--------~~d~--~v~i 497 (597)
.+..|.|.+||+-+ ...+..+. .+. -.+++++.+.. ++++|. ..|| .+++
T Consensus 356 r~~~~vln~~~g~vQ~ydl~t-d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYT-DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCceeecCCCceEEEEeccc-cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 45566777777765 22222221 111 13444444444 334443 2233 3677
Q ss_pred EEcCCCcceeee-----eCCCCceeEEEEee-cCC-EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceE
Q 042883 498 WDVKENLPLHTF-----RGHTNEKNFVGLTV-NNE-YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFIS 570 (597)
Q Consensus 498 wd~~~~~~~~~~-----~~~~~~v~~v~~s~-~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 570 (597)
|-......-..+ ..|...+...++.+ ... ..++++.||.++||-+...+.+.............. -|..+++
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s-y~k~~i~ 513 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS-YHKTPIT 513 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec-cccCccc
Confidence 865543322222 25666555555443 333 788999999999999855443332222111111111 2588999
Q ss_pred EEEEccCCCeEEEecCcccEEEEEecC
Q 042883 571 AVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 571 ~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+.+|+.||. +++.+.|++|.|||.++
T Consensus 514 a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 514 ALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred chhhcCCCc-EEEEecCCEEEEecCCC
Confidence 999999995 55566788999999753
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=2.7e-15 Score=132.58 Aligned_cols=207 Identities=18% Similarity=0.259 Sum_probs=160.1
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe---eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ---SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
..+|+|.+|++ +...++++-.+..|.||...... ...++..|...|+.|+|+| ..+.|++++.|.. -+
T Consensus 10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drn-------ay 80 (361)
T KOG1523|consen 10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRN-------AY 80 (361)
T ss_pred cCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCC-------cc
Confidence 56899999999 78999999989999999986654 5778889999999999999 8888999996655 89
Q ss_pred EEEccCCC--cceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc----ceeeeeCCCCceeEEEEeecCCE
Q 042883 455 YYDLRNIS--QPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL----PLHTFRGHTNEKNFVGLTVNNEY 527 (597)
Q Consensus 455 i~d~~~~~--~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~v~~s~~g~~ 527 (597)
+|....++ ++.-.+..++..+++|.|+|. ++|++||....|.||-..... ..+.-+.+.+.|.+++|+|++-+
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 99985433 345556678899999999999 999999999999999876422 11222356778999999999999
Q ss_pred EEEEeCCCcEEEEEccC----Cccc-----cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 528 IACGSETNEVFVYHKAI----SKPA-----ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 528 l~~~~~d~~i~iwd~~~----~~~~-----~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+++|+.|+..+||..-- .++. ..++|+....... ...+.|..+.|+|+|..|+-.+.|+.|.+=|-
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99999999999997321 1110 1122222111111 23778999999999999999999999887653
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.1e-14 Score=130.74 Aligned_cols=238 Identities=14% Similarity=0.228 Sum_probs=159.7
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...+..++|++.-..+|++..|..|++|+-... ............|+|++|-|.+...|++|+. +.|.||..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSD 169 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEc
Confidence 345788999997777899999999999986553 1222223346789999999988889999886 56999986
Q ss_pred CCC----ee----------eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc
Q 042883 409 TTS----QS----------VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA 474 (597)
Q Consensus 409 ~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 474 (597)
... .. +....+| .+|+++.|++ ++..+++++.+ |..|.|||..+ +..+.......+.
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~g------sssi~iWdpdt-g~~~pL~~~glgg 240 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFG------SSSIMIWDPDT-GQKIPLIPKGLGG 240 (445)
T ss_pred CcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccC------cceEEEEcCCC-CCcccccccCCCc
Confidence 432 11 1122344 6899999999 88999998864 45699999997 4333333334567
Q ss_pred eEEEEecCC-CeEEEeeCCCcEEEEEc-CCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC-cccccc
Q 042883 475 VSYVKFLSN-NELASASTDSSLRLWDV-KENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS-KPAASH 551 (597)
Q Consensus 475 v~~v~~~~~-~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~-~~~~~~ 551 (597)
++-+.|+|+ .+|++++-|+..++|.. ++........+ .+.|...+|+|+|++|+.+.. |.-++|.+... +.....
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL 318 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence 899999999 88999999999999954 44444444433 447889999999997665433 33344443321 111100
Q ss_pred --------ccCCCCCC----CcCcCCCcceEEEEEccCCCeEEEec
Q 042883 552 --------RFGSDADH----VDDDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 552 --------~~~~~~~~----~~~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
....++.. ....--.+.+.+++|+|.|.+|++.-
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 00000000 00011256788999999999999854
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.3e-15 Score=139.81 Aligned_cols=197 Identities=19% Similarity=0.278 Sum_probs=147.1
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe
Q 042883 333 SSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ 412 (597)
Q Consensus 333 ~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 412 (597)
..++|+.+|..+++|+.||++|||++... ........|...|.+++|+| ++.+|++-+.| ..+||++.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc
Confidence 68899999999999999999999997665 34445567889999999999 79999999988 99999999997
Q ss_pred eeeEEee--ccceeEEEEeCCCCC---ceEEeecCCCcccCCCCeEEEEEccCCCc----ceeeeccCCCceEEEEecCC
Q 042883 413 SVMEYEE--HEKRAWSVDFSCTEP---SMLVSGSDDCKVGSADHHIHYYDLRNISQ----PLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 413 ~~~~~~~--~~~~v~~~~~~~~~~---~~l~s~~~d~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~v~~v~~~~~ 483 (597)
.+..... .+.....+.|+. ++ .+.+.+... .-+.|..||+..-.. .......-...|++++++++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~-----~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQF-----PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred hhhhcCCcccchhhhhceecc-cCCCceEEEEEecC-----CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence 6665542 233455677775 44 222222211 112355555543111 11222223347999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
.+++.|+.||.|.|++..+-+.++.++ .|...|+.+.|+||.+++++.+.|....|..+.-
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 678899999999999998877666654 7999999999999999999999999988887654
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-14 Score=149.60 Aligned_cols=263 Identities=15% Similarity=0.141 Sum_probs=174.2
Q ss_pred ccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+..|...|..++.++. +.+|++|+.||+|++|+.......................+.++...+ +++.+|+|+.||.|
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCeE
Confidence 3458888889888875 499999999999999998765322211122222223567888999888 78899999999999
Q ss_pred EEEeCCCCe-------eeeEEee-ccceeEE-EEeCCCCCc-eEEeecCCCcccCCCCeEEEEEccCCCcceeeec--cC
Q 042883 404 TIWDVTTSQ-------SVMEYEE-HEKRAWS-VDFSCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--GH 471 (597)
Q Consensus 404 ~iwd~~~~~-------~~~~~~~-~~~~v~~-~~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--~~ 471 (597)
.+.+++-.. ....... ..+.+.+ -+|...... .++.+.. .+.|..||++. .....+++ ..
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~-------~~~iv~~D~r~-~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD-------LSRIVSWDTRM-RHDAWRLKNQLR 1194 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe-------ccceEEecchh-hhhHHhhhcCcc
Confidence 999986521 1111111 1223333 344433344 4554443 34499999997 33333333 23
Q ss_pred CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEeecC---CEEEEEe--CCCcEEEEEccC
Q 042883 472 KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLTVNN---EYIACGS--ETNEVFVYHKAI 544 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~g---~~l~~~~--~d~~i~iwd~~~ 544 (597)
.+.|++++.+|. +.+++|+..|.+.+||+|=+.++..+. ++..++..+..+|-. .+.++++ ..+.|.+|++.+
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 478999999999 899999999999999999888887775 445678888877742 4555544 467899999998
Q ss_pred CccccccccCCC---C-----CCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 545 SKPAASHRFGSD---A-----DHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 545 ~~~~~~~~~~~~---~-----~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|.....+..+.. . .......+.-.....++...+.++.+|+.|..|+.||..
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 865554443310 0 000000122233334455556789999999999999974
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-14 Score=132.26 Aligned_cols=249 Identities=13% Similarity=0.201 Sum_probs=178.4
Q ss_pred CCCcEEEEEEcCCC--CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 328 AANIISSIEFDRDD--ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~--~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
-...|.+++|.-++ ..+...+.+..+..+.+......... ...........+|-+++.. +..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-DDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccc-ccccccccccccccchhhc---CCEEEEEecCCcEEE
Confidence 34567777787654 34554446667777766554111110 1111222345667677655 457888888999999
Q ss_pred EeCCCCe----eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC---------C
Q 042883 406 WDVTTSQ----SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH---------K 472 (597)
Q Consensus 406 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~ 472 (597)
|....+. ....+. ....+..+.-++....++++||.... ..+.+||+... +.+-.-+.. .
T Consensus 130 ~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~-----n~lkiwdle~~-~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENI-----NELKIWDLEQS-KQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred EeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcc-----cceeeeecccc-eeeeeccCCCCccccceee
Confidence 9987443 222332 23567888888877788888885421 45899999873 333322211 1
Q ss_pred CceEEEEecCC---CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccc
Q 042883 473 KAVSYVKFLSN---NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 473 ~~v~~v~~~~~---~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 548 (597)
-+++++.|.+. ..|++++.-+.|++||.+. .+++.+|.--..+++++...|+|++|++|..-|.+..||++.++..
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 25677888665 6799999999999999987 5688888877889999999999999999999999999999998877
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
....-+ -.+.|.+|..+|.+++|+++|-|..|+|+|+.+
T Consensus 283 g~~~kg----------~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 283 GCGLKG----------ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccccCC----------ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 653332 278899999999999999999999999999864
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.5e-15 Score=144.03 Aligned_cols=214 Identities=18% Similarity=0.247 Sum_probs=158.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCC----CceEecCCCceeEEEEecCCCCEEEEeeCC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHY----PMVEMPTRSKLSCLSWNKYTKNLIASSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~----~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d 400 (597)
..+|.++|.|+++.+++..+++|+-||+|+.|++. ......+... .....+|...|+.+++++ ....|++++.|
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~D 417 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSD 417 (577)
T ss_pred EecccCceEEEEecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCC
Confidence 34899999999999999999999999999999887 3233322222 234568999999999998 67789999999
Q ss_pred CcEEEEeCCCCeeeeEEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-------C
Q 042883 401 GIVTIWDVTTSQSVMEYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-------H 471 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~ 471 (597)
|++++|+.....+ .++.. ..+...++++-.....+.++...-+. -.++|+.. ...+..+.. -
T Consensus 418 gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~-------~~~~~~ev-~s~~~~~~s~~~~~~~~ 488 (577)
T KOG0642|consen 418 GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY-------TSIDDMEV-VSDLLIFESSASPGPRR 488 (577)
T ss_pred ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccccc-------ccchhhhh-hhheeeccccCCCcccc
Confidence 9999999865554 33322 22445666665423233333322111 23333333 223333321 1
Q ss_pred CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 472 KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
...+.-+.++|. .+.+++..|+.|+++|..++.+++....|...++++++.|+|.+|++|+.||.+++|.+.....+.
T Consensus 489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 489 YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred cCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 245677888898 889999999999999999999999999999999999999999999999999999999986655443
No 207
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.2e-15 Score=133.18 Aligned_cols=186 Identities=18% Similarity=0.287 Sum_probs=144.0
Q ss_pred CEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCC-CCceEEeecCCCcccCCCCeEEEEEccCCCc-ceeeec
Q 042883 392 NLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSADHHIHYYDLRNISQ-PLHVFN 469 (597)
Q Consensus 392 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~-~~~~~~ 469 (597)
+.++++...|.|++||..+++.+..+.++...++.+.|... .+..+.+++.||. |++||+|...+ ....+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~-------Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT-------VRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCe-------EEEEEeecchhhhheecc
Confidence 56888888999999999999999999999999999999753 5677888886555 99999997433 333344
Q ss_pred cCC-CceEEEEecCC-CeEEEee----CCCcEEEEEcCCCcc-eeee-eCCCCceeEEEEeec-CCEEEEEeCCCcEEEE
Q 042883 470 GHK-KAVSYVKFLSN-NELASAS----TDSSLRLWDVKENLP-LHTF-RGHTNEKNFVGLTVN-NEYIACGSETNEVFVY 540 (597)
Q Consensus 470 ~~~-~~v~~v~~~~~-~~l~s~~----~d~~v~iwd~~~~~~-~~~~-~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iw 540 (597)
++. .+..+++.+-. +.+++|. .+-.|.+||+|..+. +..+ ..|...|+++.|+|. .++|++|+.||-|.||
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 555 46667766534 6666664 466799999998765 5554 479999999999997 5689999999999999
Q ss_pred EccCCcc----ccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEec
Q 042883 541 HKAISKP----AASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 541 d~~~~~~----~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~ 596 (597)
|+..... ..++ .|...|..+.|..++ +.|.+-+..++..+|++.
T Consensus 194 D~~~d~EeDaL~~vi------------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVI------------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred ecCCCcchhhHHHhh------------cccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9875421 1222 246779999998776 458888888999999974
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=8.4e-15 Score=139.11 Aligned_cols=246 Identities=15% Similarity=0.238 Sum_probs=176.9
Q ss_pred cCCCCcEEEEEEcCCCCEE-EEeeCCCcEEEEecccCccCCcc---------------CCCC-------ceEec------
Q 042883 326 FHAANIISSIEFDRDDELF-ASAGVSRRIKIFEFSSVVNEPRD---------------VHYP-------MVEMP------ 376 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l-~t~~~d~~v~iw~~~~~~~~~~~---------------~~~~-------~~~~~------ 376 (597)
+.+...-+.|..+|||+|+ |||.+.-.|++||+.....+... .... .+.+.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4577788899999999985 67888999999998765211100 0000 00000
Q ss_pred ----CCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCe
Q 042883 377 ----TRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHH 452 (597)
Q Consensus 377 ----~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~ 452 (597)
-+..-..++++..+-. |++++....|+-+++..|..+..+....+.++.+.+++ -..+|++|+.+|.
T Consensus 128 y~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~------- 198 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGV------- 198 (703)
T ss_pred eeeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCce-------
Confidence 0111233444432333 44444456799999999999999988889999999998 7888888886555
Q ss_pred EEEEEccCCCcceeeec------cCCC-----ceEEEEecCCCe-EEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEE
Q 042883 453 IHYYDLRNISQPLHVFN------GHKK-----AVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFV 519 (597)
Q Consensus 453 i~i~d~~~~~~~~~~~~------~~~~-----~v~~v~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v 519 (597)
|.+||.+. ...+.++. .|.+ .|+++.|+.+++ +++|+.+|.|.|||++..+++..-. +...+|..+
T Consensus 199 VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 199 VEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred EEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 99999997 44444432 2333 499999999854 8999999999999999988876643 234477888
Q ss_pred EEeec--CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 520 GLTVN--NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 520 ~~s~~--g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|.+. +..|++. ....++|||-.+|++...+.. ...++.+++-|++.+++++..++.+..|=
T Consensus 278 ~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp------------t~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP------------TSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred cccccCCCceEEec-chHHhhhcccccCCceeeccc------------cCCcCceeeecCCceEEEecCCCcceeEE
Confidence 88776 3444443 456799999999999887765 56699999999999999999888776653
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1e-14 Score=147.08 Aligned_cols=211 Identities=9% Similarity=0.125 Sum_probs=140.3
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC---CcEEEEeCCCCeeeeEEeeccceeEE
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---GIVTIWDVTTSQSVMEYEEHEKRAWS 426 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~ 426 (597)
+..|.+||.+.. .......+...+...+|+| +++.|+..+.+ ..|++||+.++.... +....+....
T Consensus 183 ~~~i~i~d~dg~--------~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~ 252 (429)
T PRK01742 183 PYEVRVADYDGF--------NQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGA 252 (429)
T ss_pred eEEEEEECCCCC--------CceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCc
Confidence 468999998765 2333345667899999999 67777766543 369999998875322 1222233456
Q ss_pred EEeCCCCCceEEee-cCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEE-eeCCCcEEEEEcCCC
Q 042883 427 VDFSCTEPSMLVSG-SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELAS-ASTDSSLRLWDVKEN 503 (597)
Q Consensus 427 ~~~~~~~~~~l~s~-~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s-~~~d~~v~iwd~~~~ 503 (597)
++|+| ++..|+.+ +.++. -.|++||+.+ .....+..+...+....|+|+ ..|+. +..+|...||++...
T Consensus 253 ~~wSP-DG~~La~~~~~~g~-----~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 253 PAFSP-DGSRLAFASSKDGV-----LNIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred eeECC-CCCEEEEEEecCCc-----EEEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 89999 66666554 33433 1255556654 334556666677889999999 44554 446788888887542
Q ss_pred -cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE
Q 042883 504 -LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 504 -~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
.....+ ++.. ....|+|||++|+.++.++ +.+||+.+++...... ......+.|+|+|++|+
T Consensus 325 ~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------------~~~~~~~~~sPdG~~i~ 387 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-------------TFLDESPSISPNGIMII 387 (429)
T ss_pred CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------------CCCCCCceECCCCCEEE
Confidence 222323 3333 4678999999998887654 6669998876542221 11124578999999999
Q ss_pred EecCcccEEEEEe
Q 042883 583 TANRKGAIKVLVL 595 (597)
Q Consensus 583 s~~~dg~v~iwd~ 595 (597)
.++.+|.+.+|.+
T Consensus 388 ~~s~~g~~~~l~~ 400 (429)
T PRK01742 388 YSSTQGLGKVLQL 400 (429)
T ss_pred EEEcCCCceEEEE
Confidence 9999999888875
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=9.1e-15 Score=147.37 Aligned_cols=219 Identities=11% Similarity=0.076 Sum_probs=144.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEe-eCC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVS---RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASS-DYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~-~~d 400 (597)
+..|...+.+..|+|||+.|+.++.+ ..|++||+.++. ........+....++|+| +++.|+.+ +.+
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--------~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~ 269 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--------RKVVASFRGHNGAPAFSP-DGSRLAFASSKD 269 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--------eEEEecCCCccCceeECC-CCCEEEEEEecC
Confidence 34577889999999999999887653 469999997751 111111223344689999 67766655 467
Q ss_pred CcEEEE--eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 401 GIVTIW--DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 401 g~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
|.+.|| |+.++. ...+..+...+....|+| ++..++.++. .++...||++...+.....+ .+.. ...
T Consensus 270 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~------~~g~~~I~~~~~~~~~~~~l-~~~~--~~~ 338 (429)
T PRK01742 270 GVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSD------RSGSPQVYRMSASGGGASLV-GGRG--YSA 338 (429)
T ss_pred CcEEEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEEC------CCCCceEEEEECCCCCeEEe-cCCC--CCc
Confidence 765555 665554 344556667788999999 6665554432 13346778765433333333 3333 457
Q ss_pred EecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc--CCccccccccCC
Q 042883 479 KFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA--ISKPAASHRFGS 555 (597)
Q Consensus 479 ~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~ 555 (597)
.|+|+ ..|+..+.+ .+.+||+.+++.......+ ....++|+|||++|+.++.++.+.+|++. +++....+.
T Consensus 339 ~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--- 412 (429)
T PRK01742 339 QISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--- 412 (429)
T ss_pred cCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc---
Confidence 89999 667666665 4666999887654322222 23568899999999999999988888763 455555443
Q ss_pred CCCCCcCcCCCcceEEEEEccC
Q 042883 556 DADHVDDDMGSYFISAVCWKSD 577 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~ 577 (597)
+|.+.+..++|+|-
T Consensus 413 --------~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 --------GSDGQVKFPAWSPY 426 (429)
T ss_pred --------CCCCCCCCcccCCC
Confidence 23667888999974
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=131.16 Aligned_cols=251 Identities=12% Similarity=0.121 Sum_probs=178.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecC---CCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPT---RSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+|.+.|.|++|+..+..+++|+.+++|...|+.+. ..+....| .+.|+.+..+| ..+.|++.+.+|.|
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~--------qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK--------QSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLV 173 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccc--------eeeeeecccCcccceeecccCC-CCceEEEEecCceE
Confidence 47799999999999999999999999999999876 33333333 45899999999 58899999999999
Q ss_pred EEEeCCCCe-ee--eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC---C---c
Q 042883 404 TIWDVTTSQ-SV--MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK---K---A 474 (597)
Q Consensus 404 ~iwd~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~---~ 474 (597)
.+||.+... .. ............+.|+|..+.+|++.+..+. +.+||.+....++....+.. . .
T Consensus 174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G-------~~~~D~R~~~~~~~~~~~~~~L~~~~~~ 246 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG-------PNVFDRRMQARPVYQRSMFKGLPQENTE 246 (609)
T ss_pred EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC-------CCceeeccccchHHhhhccccCcccchh
Confidence 999997654 22 2223445678889999988899998875444 89999997555554433221 1 2
Q ss_pred eEEEEecCC-CeEEEeeCCCcEEEEEcCCC-cceeeeeCCC------CceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 475 VSYVKFLSN-NELASASTDSSLRLWDVKEN-LPLHTFRGHT------NEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 475 v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
-.++.|+|+ +.|++--....-.+||+.+. -++.++.... ..+.+++|-.| ..+++|+.+-.|++|.+....
T Consensus 247 ~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 247 WMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred hhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCc
Confidence 256789999 77777776667778898763 3444443111 24556777554 348999999999999976422
Q ss_pred ccccc-ccCC---------C--CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 547 PAASH-RFGS---------D--ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 547 ~~~~~-~~~~---------~--~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
...-+ ..+. . ....--.+|..-++.|.|+|...+|++.|..+.++||.
T Consensus 326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 11110 0010 0 00001135789999999999999999999999999996
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=139.89 Aligned_cols=207 Identities=14% Similarity=0.294 Sum_probs=152.7
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCC-------------------------------CCc
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVH-------------------------------YPM 372 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~-------------------------------~~~ 372 (597)
.+.+|.+.|+|++|+.||+++|+|+.|..|.+|+..-.. .....+ ...
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V 126 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV 126 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH
Confidence 456899999999999999999999999999999854220 000000 000
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE---eeccceeEEEEeCCCCC----ceEEeecCCCc
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY---EEHEKRAWSVDFSCTEP----SMLVSGSDDCK 445 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~----~~l~s~~~d~~ 445 (597)
........+.+++|.. +|.+++.|-.||+|.|-+- +++....+ .+.+++|++++|+|..+ .++++..
T Consensus 127 ~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D---- 200 (1081)
T KOG1538|consen 127 SKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD---- 200 (1081)
T ss_pred HhhhhheeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe----
Confidence 1112234577888886 8999999999999999874 34433333 35788999999999543 3444444
Q ss_pred ccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec
Q 042883 446 VGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN 524 (597)
Q Consensus 446 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~ 524 (597)
++.++.+|.+. ++.+..-..-.-...++.+.++ .+++.|+.|+.+++|- +.|-.+.++.....+|+.++..|+
T Consensus 201 ---W~qTLSFy~Ls--G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 201 ---WGQTLSFYQLS--GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred ---ccceeEEEEec--ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence 44557777776 4444433333445678888888 7899999999999996 667778888777889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcc
Q 042883 525 NEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 525 g~~l~~~~~d~~i~iwd~~ 543 (597)
+++++.|..||+|.-|++-
T Consensus 275 sQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CceEEEEEccCeeehhhhH
Confidence 9999999999999999864
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=3.5e-16 Score=154.43 Aligned_cols=200 Identities=18% Similarity=0.286 Sum_probs=153.3
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCe
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHH 452 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~ 452 (597)
...+|...|+|+.|.. .+.++++|+.|..|+||.+.++.+.....||.+.|++++.+. .+.++++++.|..
T Consensus 185 rLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~v------- 255 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKV------- 255 (1113)
T ss_pred HHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCce-------
Confidence 4557899999999998 899999999999999999999999999999999999999986 7788888887666
Q ss_pred EEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCC--------------cceeeeeCC------
Q 042883 453 IHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKEN--------------LPLHTFRGH------ 512 (597)
Q Consensus 453 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~--------------~~~~~~~~~------ 512 (597)
|++|-+.. +.++..+.+|.+.|++++|+|-. +.+.||++++||.+-. ..+..+...
T Consensus 256 IrvWrl~~-~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 256 IRVWRLPD-GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EEEEecCC-CchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 99999998 88999999999999999999954 7889999999998710 000000000
Q ss_pred ----------CCceeEEEEeecC-----------CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEE
Q 042883 513 ----------TNEKNFVGLTVNN-----------EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISA 571 (597)
Q Consensus 513 ----------~~~v~~v~~s~~g-----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 571 (597)
......++|...+ .+.+++-.+..+.+|++.+|...+... +|...+..
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-----------ghsd~~yv 400 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-----------GHSDEVYV 400 (1113)
T ss_pred ccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-----------ccccceee
Confidence 0000111121111 334444455667788877776665553 46888999
Q ss_pred EEEccCCCeE-EEecCcccEEEEEec
Q 042883 572 VCWKSDSPTM-LTANRKGAIKVLVLA 596 (597)
Q Consensus 572 v~~~~~~~~l-~s~~~dg~v~iwd~~ 596 (597)
+.++|-...+ .+++.||...|||+-
T Consensus 401 Ld~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred eeecCCCcHhhhhccCCCceEeeecc
Confidence 9999976554 578999999999974
No 214
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=2.1e-13 Score=133.34 Aligned_cols=233 Identities=10% Similarity=0.123 Sum_probs=146.9
Q ss_pred EEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEe-eCCCcEEEEeCCC-Cee--eeEEeec
Q 042883 345 ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASS-DYDGIVTIWDVTT-SQS--VMEYEEH 420 (597)
Q Consensus 345 ~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~ 420 (597)
++...++.|.+|++.+. ... ...........+..++++| ++++|+++ ..++.|.+|++.. +.. +... ..
T Consensus 6 ~~~~~~~~I~~~~~~~~-g~l----~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~ 78 (330)
T PRK11028 6 IASPESQQIHVWNLNHE-GAL----TLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PL 78 (330)
T ss_pred EEcCCCCCEEEEEECCC-Cce----eeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cC
Confidence 44466899999999642 111 1222233345677899999 67777665 4578899999863 332 2222 12
Q ss_pred cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc---eeeeccCCCceEEEEecCC-CeEE-EeeCCCcE
Q 042883 421 EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP---LHVFNGHKKAVSYVKFLSN-NELA-SASTDSSL 495 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~v~~~~~-~~l~-s~~~d~~v 495 (597)
.+.+..++|+| +++++++++. .++.|.+||+...+.. +..+. +......++++|+ ++++ +...++.|
T Consensus 79 ~~~p~~i~~~~-~g~~l~v~~~------~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 79 PGSPTHISTDH-QGRFLFSASY------NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred CCCceEEEECC-CCCEEEEEEc------CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 34567899999 6776666653 2456999999743322 22222 2334677889999 5554 45567999
Q ss_pred EEEEcCCCccee-------eeeCCCCceeEEEEeecCCEEEEEeC-CCcEEEEEccC--CccccccccCCCCCCCcCcCC
Q 042883 496 RLWDVKENLPLH-------TFRGHTNEKNFVGLTVNNEYIACGSE-TNEVFVYHKAI--SKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 496 ~iwd~~~~~~~~-------~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~h 565 (597)
.+||+.+...+. ... .......++|+|+|++++++.. ++.|.+|++.. ++.............. .+
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~---~~ 226 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF---SD 226 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC---CC
Confidence 999997633221 111 1334578999999999988765 89999999974 3321111111100000 01
Q ss_pred CcceEEEEEccCCCeEEEec-CcccEEEEEec
Q 042883 566 SYFISAVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
......+.|+|+|++++++. .++.|.+|+++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 22345789999999998875 47899999985
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=2.2e-15 Score=133.33 Aligned_cols=219 Identities=15% Similarity=0.213 Sum_probs=153.3
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee
Q 042883 335 IEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV 414 (597)
Q Consensus 335 i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 414 (597)
+.|||+|+++|+.+.- .+.|-|..+. .....+.--..|.-+.|..+.-..|...+.++.|.+|++...+..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--------q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--------QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--------hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 4699999999999855 7778887665 222222223456778898744444555677889999999988888
Q ss_pred eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEE-eeCCC
Q 042883 415 MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELAS-ASTDS 493 (597)
Q Consensus 415 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s-~~~d~ 493 (597)
..+....+++.++.|+|++..++.+... +-.|.+|.+.+ +....+......+..++|+|++.+++ .+.-.
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF-------~lriTVWSL~t--~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEF-------DLRITVWSLNT--QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecc-------eeEEEEEEecc--ceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 8888888999999999944466666664 45599999986 33333443445678999999966544 33221
Q ss_pred ---cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC--CCcEEEEEccCCccccccccCCCCCCCcCcCCCcc
Q 042883 494 ---SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE--TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYF 568 (597)
Q Consensus 494 ---~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 568 (597)
.+.|..-.....+..+...+-..+++.|+|||..|++=.. +-.|+.|.. .-.
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-----------------------~lG 212 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-----------------------GLG 212 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee-----------------------ccc
Confidence 1333322334556666666667789999999998875332 233333331 345
Q ss_pred eEEEEEccCCCeEEEecCcccEEEEE
Q 042883 569 ISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 569 i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+..++|+|.+++|+.|+.|+.++|.+
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhc
Confidence 88999999999999999999998865
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.3e-15 Score=139.08 Aligned_cols=217 Identities=19% Similarity=0.289 Sum_probs=152.6
Q ss_pred ceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE-eeccceeEEEEeCCCCC-ceEEeecCCCcccCC
Q 042883 372 MVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY-EEHEKRAWSVDFSCTEP-SMLVSGSDDCKVGSA 449 (597)
Q Consensus 372 ~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~l~s~~~d~~~~~~ 449 (597)
....+|.+-|.+++|+. +|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|.|..+ .++++|..
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg------- 115 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG------- 115 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC-------
Confidence 34558999999999998 8999999999999999999877777666 58999999999999654 56667664
Q ss_pred CCeEEEEEccC---------CCcceeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcce----------ee
Q 042883 450 DHHIHYYDLRN---------ISQPLHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPL----------HT 508 (597)
Q Consensus 450 d~~i~i~d~~~---------~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~----------~~ 508 (597)
|..|++||+.. .......+..|...|..++..|+ +.+.+++.||+|+-||++....- ..
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 44599999984 23345556778899999999988 78999999999999999873211 11
Q ss_pred eeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCC-cccccc---ccCC---------C-CCCC---cC--cCCCcc
Q 042883 509 FRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAIS-KPAASH---RFGS---------D-ADHV---DD--DMGSYF 568 (597)
Q Consensus 509 ~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~~---------~-~~~~---~~--~~h~~~ 568 (597)
+...--...++.++|. ..+|++|+.|-..++||.+.. +....- .... + +.+. .+ ..-...
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~ 275 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC 275 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence 1112234568899997 458899999999999994321 111100 0000 0 0010 00 000123
Q ss_pred eEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 569 ISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 569 i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++-+.|+|+|.-|+..-..-.|++||+.
T Consensus 276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred eEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 6778899999765554334478999874
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1.4e-15 Score=140.67 Aligned_cols=192 Identities=17% Similarity=0.187 Sum_probs=166.8
Q ss_pred ceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc
Q 042883 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR 459 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~ 459 (597)
..+.+.+.. +|.+++.|+.-|.|..+|..++.+...+. -...|.++.|.. +..+||++- ...++|||-.
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVAQ--------K~y~yvYD~~ 199 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVAQ--------KKYVYVYDNN 199 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhhh--------hceEEEecCC
Confidence 455688887 79999999999999999999999988885 356799999997 778888774 4568999966
Q ss_pred CCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEE
Q 042883 460 NISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 538 (597)
Q Consensus 460 ~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 538 (597)
+..+.-++.| ..|..+.|.|. -.|++++..|.++--|+.+|+.+..+....+.+..+.-+|-...+-+|..+|+|.
T Consensus 200 --GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 200 --GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred --CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 5667767655 46899999999 5578889999999999999999999988888888899999999999999999999
Q ss_pred EEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 539 VYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...+..++..+.. |.++|.+|+++++|+|++|.|.|..++|||+.
T Consensus 277 lWSP~skePLvKiLc-----------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILC-----------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred ecCCCCcchHHHHHh-----------cCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 999998888776653 69999999999999999999999999999986
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1e-12 Score=116.38 Aligned_cols=176 Identities=15% Similarity=0.266 Sum_probs=130.2
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC-CeeeeEEeec--cceeEEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT-SQSVMEYEEH--EKRAWSV 427 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~--~~~v~~~ 427 (597)
..|.|||=.. ...+.......+|.+|.+.+ ..|++.- .+.|+||...+ .+.+..+... .....+
T Consensus 75 NkviIWDD~k--------~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~- 141 (346)
T KOG2111|consen 75 NKVIIWDDLK--------ERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCS- 141 (346)
T ss_pred ceEEEEeccc--------CcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEe-
Confidence 4799999222 35666777789999999986 3555554 57999999873 3444444322 223333
Q ss_pred EeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc-ceeeeccCCCceEEEEecCC-CeEEEeeCCCc-EEEEEcCCCc
Q 042883 428 DFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ-PLHVFNGHKKAVSYVKFLSN-NELASASTDSS-LRLWDVKENL 504 (597)
Q Consensus 428 ~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~-v~iwd~~~~~ 504 (597)
..|..+..+++.. |..-|.|+|-|+..... +-..+.+|.+.|.+++.+-+ ..+||+|..|+ |+|||..+|.
T Consensus 142 -~~~~~~k~~LafP-----g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 142 -LCPTSNKSLLAFP-----GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred -ecCCCCceEEEcC-----CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 3443333333332 23458899999986322 35778899999999999988 67899999998 8999999999
Q ss_pred ceeeeeC--CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC
Q 042883 505 PLHTFRG--HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 505 ~~~~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 545 (597)
.+..+.. ....|++++|||++.+|+++++-|+|+||.++..
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999873 2347899999999999999999999999998763
No 219
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.61 E-value=6.1e-16 Score=109.33 Aligned_cols=61 Identities=28% Similarity=0.509 Sum_probs=56.9
Q ss_pred CcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHH
Q 042883 38 DTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLK 98 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~ 98 (597)
++.||||++.+++||+++|||+||+.||.+|+.....||.|++.+...++.+|..+.+.++
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHH
Confidence 5789999999999999999999999999999998778999999999899999988887765
No 220
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.9e-13 Score=136.89 Aligned_cols=241 Identities=14% Similarity=0.186 Sum_probs=169.7
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCC--CEEEEeeCCCcEEEEeCCCC
Q 042883 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTK--NLIASSDYDGIVTIWDVTTS 411 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 411 (597)
.-.|++|+++++... +..|.||...++ ........|..++..+.+.|... .++++++.||.|++||...+
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg-------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATG-------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchH-------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 345899998887765 668999999988 33335556788999999988555 57779999999999999988
Q ss_pred eeeeEEeeccceeEEEEeCC-------------CCCceEEeecCCCcc--------------------------------
Q 042883 412 QSVMEYEEHEKRAWSVDFSC-------------TEPSMLVSGSDDCKV-------------------------------- 446 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~~~~-------------~~~~~l~s~~~d~~~-------------------------------- 446 (597)
..+.++..+. ++.++.+.| .+...+.+.+.+-..
T Consensus 93 ~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ 171 (792)
T KOG1963|consen 93 ELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS 171 (792)
T ss_pred EEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence 8777765321 222222211 011111111111000
Q ss_pred -----cCCCCeEEEEEccCCCcceee---eccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC----CcceeeeeCCC
Q 042883 447 -----GSADHHIHYYDLRNISQPLHV---FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE----NLPLHTFRGHT 513 (597)
Q Consensus 447 -----~~~d~~i~i~d~~~~~~~~~~---~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~ 513 (597)
-.-+-.+.+|+.....+.... -..|...+++++++|. +++++|..||.|.+|.-.. ..-...+.-|.
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 111223566666542211111 1236666899999999 8899999999999997443 22345667788
Q ss_pred CceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 514 NEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 514 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
..|++++|+++|.+|++||..|.+.+|.+.+++....-++ .++|..+.++||+.+.+....|+.|++-
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL------------gs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL------------GSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCCccccccc------------CCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999999884433333 7789999999999999999999999887
Q ss_pred Ee
Q 042883 594 VL 595 (597)
Q Consensus 594 d~ 595 (597)
..
T Consensus 320 ~~ 321 (792)
T KOG1963|consen 320 KA 321 (792)
T ss_pred ec
Confidence 64
No 221
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=2.2e-14 Score=123.37 Aligned_cols=207 Identities=18% Similarity=0.284 Sum_probs=145.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCc--------------cC------CccC-----------C------
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVV--------------NE------PRDV-----------H------ 369 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~--------------~~------~~~~-----------~------ 369 (597)
.|...|+.+.--|+ ..+.+-+.|+.+.+|++..+. .. .... .
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 36678888888886 457777889999999887620 00 0000 0
Q ss_pred --CCc-------eEecCCCceeEEEEecCCC--CEEEEeeCCCcEEEEeCCCCee----------eeEEeeccceeEEEE
Q 042883 370 --YPM-------VEMPTRSKLSCLSWNKYTK--NLIASSDYDGIVTIWDVTTSQS----------VMEYEEHEKRAWSVD 428 (597)
Q Consensus 370 --~~~-------~~~~~~~~i~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~ 428 (597)
... ...+..+.+.+..|....+ -++++|..+|.|.+||+.++.. ......|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 000 0011234466666544333 3567888999999999988733 333446889999999
Q ss_pred eCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc--ce-eeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc
Q 042883 429 FSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ--PL-HVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL 504 (597)
Q Consensus 429 ~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~--~~-~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~ 504 (597)
+.+ .-..=++|+ .+..+..|.+..... ++ ..+.-....|..+.+-|| ..+++++.|++|+||..++..
T Consensus 213 yas-~~~rGisgg-------a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 213 YAS-SCDRGISGG-------ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred ech-hhcCCcCCC-------ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 976 222223333 455588888865211 11 222223456889999999 678999999999999999999
Q ss_pred ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 505 PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 505 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
++..+.-|...|++++|+|+..++|+++.|++|.+|++
T Consensus 285 pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999985
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=6e-14 Score=123.90 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=111.5
Q ss_pred EEEEeCCCCCceEEeecC--CCcccCCCCeEEEEEccCCCcceeeecc-CCCceEEEEecCC-CeEEE--eeCCCcEEEE
Q 042883 425 WSVDFSCTEPSMLVSGSD--DCKVGSADHHIHYYDLRNISQPLHVFNG-HKKAVSYVKFLSN-NELAS--ASTDSSLRLW 498 (597)
Q Consensus 425 ~~~~~~~~~~~~l~s~~~--d~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~~-~~l~s--~~~d~~v~iw 498 (597)
..+.|+|.+..+++.... |.+-.+.-+...+|.++....++..+.- ..++|.+++|+|+ ..|++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 457888844444444441 2221122344666666554555655543 3457999999999 55543 4567899999
Q ss_pred EcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc
Q 042883 499 DVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 499 d~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 575 (597)
|++ ++.+..+. ...++.+.|+|+|++|++++.+ |.|.+||..+.+.+.... ...++.++|+
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-------------~~~~t~~~Ws 152 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-------------HSDATDVEWS 152 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-------------cCcEEEEEEc
Confidence 997 77777775 4567899999999999998754 679999999888776654 3357899999
Q ss_pred cCCCeEEEecC------cccEEEEEec
Q 042883 576 SDSPTMLTANR------KGAIKVLVLA 596 (597)
Q Consensus 576 ~~~~~l~s~~~------dg~v~iwd~~ 596 (597)
|+|++|++++. |+.++||++.
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec
Confidence 99999998753 7889999974
No 223
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=1.2e-15 Score=144.44 Aligned_cols=88 Identities=23% Similarity=0.449 Sum_probs=78.8
Q ss_pred CCCCCCcccccccccCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHH
Q 042883 17 SEPPFSLRTAVEVDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKL 96 (597)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~ 96 (597)
..|+++-....+.+....++..+.|+||+++|.+|++++|||+||..||..|+.....||+||..+....+++|..|.++
T Consensus 5 di~D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i 84 (397)
T TIGR00599 5 DITDSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI 84 (397)
T ss_pred cCCCchhhccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence 56677777777777788999999999999999999999999999999999999887789999999988899999999999
Q ss_pred HHHHHHhh
Q 042883 97 LKKTSARQ 104 (597)
Q Consensus 97 ~~~~~~~~ 104 (597)
++.|...+
T Consensus 85 Ve~~~~~R 92 (397)
T TIGR00599 85 VESFKNLR 92 (397)
T ss_pred HHHHHHhh
Confidence 99887543
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=124.10 Aligned_cols=185 Identities=15% Similarity=0.233 Sum_probs=137.0
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
...+..++|++ .-..++++..|-.|++||-.. .....++ .....|++++|-|.....|+.|...| |.+|
T Consensus 98 ~~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g--------IciW 167 (445)
T KOG2139|consen 98 EIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG--------ICIW 167 (445)
T ss_pred hcceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce--------eEEE
Confidence 34577899998 566788889999999999765 4444443 34567999999998888899888655 8999
Q ss_pred EccCCCcc-------------eeeeccCCCceEEEEecCC-CeEEEeeC-CCcEEEEEcCCCcceeeeeCCCCceeEEEE
Q 042883 457 DLRNISQP-------------LHVFNGHKKAVSYVKFLSN-NELASAST-DSSLRLWDVKENLPLHTFRGHTNEKNFVGL 521 (597)
Q Consensus 457 d~~~~~~~-------------~~~~~~~~~~v~~v~~~~~-~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~ 521 (597)
........ +....+| .+|+++.|.+| ..+++++. |..|.|||..++..+....-..+.++-+.|
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW 246 (445)
T ss_pred EcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence 87542211 1112334 68999999999 66777774 567999999988766555444567888999
Q ss_pred eecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe
Q 042883 522 TVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 522 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
||||.+|++++-|+..++|+............+ .+.|...+|+|+|++|+-.
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-----------sgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQSWTKERWILG-----------SGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred cCCCCEEEEecccceeeeehhcccceecceecc-----------CCceeeeeecCCCCEEEEE
Confidence 999999999999999999965433322223332 5589999999999986543
No 225
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=3.5e-13 Score=120.43 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=162.0
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.||.+.|++...-|...-+++.+.|.+++||--.+.. ...+.+......+++++.+.+ ....|++|-.+|++.-
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-----q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-----QYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTE 94 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEecccc-----ccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEE
Confidence 4788889998888877789999999999999543331 122333334567899999998 7889999999999998
Q ss_pred EeCC----CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc--------------------------------cCC
Q 042883 406 WDVT----TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV--------------------------------GSA 449 (597)
Q Consensus 406 wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~--------------------------------~~~ 449 (597)
+.+. ....++....|...|..+-|+. ....+++.+.|..+ |..
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 8653 2344555667889999999986 67778888877666 333
Q ss_pred CCeEEEEEccC-CCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc-ceeeeeCCCCceeEEEEeecCC
Q 042883 450 DHHIHYYDLRN-ISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL-PLHTFRGHTNEKNFVGLTVNNE 526 (597)
Q Consensus 450 d~~i~i~d~~~-~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~v~~s~~g~ 526 (597)
.|.|.+-.+.. .-.++.++.+|.+.+.+++|.+. +.+++|..|..|.+||+..++ ....+.+|...|..+..-+--+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 33333333221 13567788899999999999998 889999999999999997644 3455678888888888777778
Q ss_pred EEEEEeCCCcEEEEEccC
Q 042883 527 YIACGSETNEVFVYHKAI 544 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~ 544 (597)
.+.+++.||.|.+|+.+.
T Consensus 254 ~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeccCCCeEEEEeccc
Confidence 899999999999999764
No 226
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.55 E-value=5.1e-15 Score=106.42 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=56.8
Q ss_pred CCCcccccccccccccccccccccccHHHHHHhhcC-CCCCCCCCCCCccccccchHHHHHHHHHHHHh
Q 042883 36 DRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN-KSDCPCCGCHLTCKHIFPNLLLNKLLKKTSAR 103 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~-~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~ 103 (597)
-++|.||||++++.|||.++|||+|++.||++|+.. ...||.|++.+...++.+|..+...++.+...
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999998 66799999999999999999999999987643
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.4e-12 Score=129.29 Aligned_cols=214 Identities=12% Similarity=0.115 Sum_probs=140.0
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC---CCcEEEEeCCCCeeeeEEeeccceeEEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY---DGIVTIWDVTTSQSVMEYEEHEKRAWSV 427 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 427 (597)
..|.+||.++. .......+...+...+|+| +++.|+..+. +..|++||+.++... .+..+.+.+...
T Consensus 182 ~~l~~~d~dg~--------~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~ 251 (435)
T PRK05137 182 KRLAIMDQDGA--------NVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAP 251 (435)
T ss_pred eEEEEECCCCC--------CcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCc
Confidence 36778887654 3334445677899999999 5666666543 468999999887653 344556677889
Q ss_pred EeCCCCCc-eEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEee-CCC--cEEEEEcCC
Q 042883 428 DFSCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDS--SLRLWDVKE 502 (597)
Q Consensus 428 ~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~--~v~iwd~~~ 502 (597)
+|+| ++. ++++.+.++ +..|++||+.+ + ....+..+........|+|+ ..|+..+ .+| .|++||+.+
T Consensus 252 ~~SP-DG~~la~~~~~~g-----~~~Iy~~d~~~-~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 252 RFSP-DGRKVVMSLSQGG-----NTDIYTMDLRS-G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred EECC-CCCEEEEEEecCC-----CceEEEEECCC-C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 9999 555 445555443 24588889875 3 34555556666778899999 5566554 333 588888776
Q ss_pred CcceeeeeCCCCceeEEEEeecCCEEEEEeCC---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC
Q 042883 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSET---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP 579 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 579 (597)
+.. ..+..+...+....|+|||++|+..+.+ ..|.+||+..+.. ..+.. ...+..+.|+|||+
T Consensus 324 ~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------------~~~~~~p~~spDG~ 389 (435)
T PRK05137 324 SNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------------GFLVEGPTWAPNGR 389 (435)
T ss_pred CCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC------------CCCCCCCeECCCCC
Confidence 543 4444334556678899999998876543 3688888755432 22211 22356789999999
Q ss_pred eEEEecC-c-----ccEEEEEec
Q 042883 580 TMLTANR-K-----GAIKVLVLA 596 (597)
Q Consensus 580 ~l~s~~~-d-----g~v~iwd~~ 596 (597)
+|+..+. . ..+.++|++
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECC
Confidence 8766443 2 246666653
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-12 Score=132.66 Aligned_cols=204 Identities=9% Similarity=0.019 Sum_probs=134.6
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeC---CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCE-EEEeeCC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGV---SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNL-IASSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~-l~s~~~d 400 (597)
+..|...+.+.+|+|||+.|+..+. +..|.+||+.++ .......+.+.+...+|+| +++. +++.+.+
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--------~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~ 267 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--------QRELVGNFPGMTFAPRFSP-DGRKVVMSLSQG 267 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC--------cEEEeecCCCcccCcEECC-CCCEEEEEEecC
Confidence 3467789999999999998887753 468999999876 1222223455677889999 5554 4566666
Q ss_pred Cc--EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 401 GI--VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 401 g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
|. |++||+.++.. ..+..+........|+| ++..++..+... ....|++||+.. + ....+..+...+...
T Consensus 268 g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~----g~~~Iy~~d~~g-~-~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 268 GNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESDRS----GSPQLYVMNADG-S-NPRRISFGGGRYSTP 339 (435)
T ss_pred CCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEECCC----CCCeEEEEECCC-C-CeEEeecCCCcccCe
Confidence 55 77778877654 44555666677899999 666666554321 134688888764 3 333443344556778
Q ss_pred EecCC-CeEEEeeCC---CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC------CcEEEEEccCCcc
Q 042883 479 KFLSN-NELASASTD---SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET------NEVFVYHKAISKP 547 (597)
Q Consensus 479 ~~~~~-~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d------~~i~iwd~~~~~~ 547 (597)
.|+|+ ..|+..+.+ ..|.+||+.++. ...+.. ...+..+.|+|||++|+..+.+ ..++++|+..+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 89999 566655433 358888976543 333332 2346778999999988765442 2578888765544
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.7e-12 Score=127.39 Aligned_cols=213 Identities=9% Similarity=0.146 Sum_probs=135.6
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee---CCCcEEEEeCCCCeeeeEEeeccceeEEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD---YDGIVTIWDVTTSQSVMEYEEHEKRAWSV 427 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 427 (597)
..|.+||.++. .......+...+...+|+| +++.|+..+ .+..|.+|++.+++... +....+.+...
T Consensus 179 ~~l~~~d~dg~--------~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~ 248 (429)
T PRK03629 179 YELRVSDYDGY--------NQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAP 248 (429)
T ss_pred eeEEEEcCCCC--------CCEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCe
Confidence 36888888765 2233334566889999999 666666543 23579999998875432 22233345578
Q ss_pred EeCCCCCceEE-eecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeC-CCcEEE--EEcCC
Q 042883 428 DFSCTEPSMLV-SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAST-DSSLRL--WDVKE 502 (597)
Q Consensus 428 ~~~~~~~~~l~-s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~-d~~v~i--wd~~~ 502 (597)
.|+| ++..++ +.+.++ +..|++||+.+ +. ...+..+...+....|+|+ ..|+..+. ++...| +|+.+
T Consensus 249 ~~SP-DG~~La~~~~~~g-----~~~I~~~d~~t-g~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 249 AFSP-DGSKLAFALSKTG-----SLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EECC-CCCEEEEEEcCCC-----CcEEEEEECCC-CC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 9999 666555 434332 23589999986 33 3444444556788999999 55655554 344444 46665
Q ss_pred CcceeeeeCCCCceeEEEEeecCCEEEEEeCC---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC
Q 042883 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSET---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP 579 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 579 (597)
+.. ..+...........|+|||++|+..+.+ ..|.+||+.++....... ........|+|||+
T Consensus 321 g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-------------~~~~~~p~~SpDG~ 386 (429)
T PRK03629 321 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-------------TFLDETPSIAPNGT 386 (429)
T ss_pred CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-------------CCCCCCceECCCCC
Confidence 543 3444344445678999999998776543 358889988776432211 11123578999999
Q ss_pred eEEEecCccc---EEEEEe
Q 042883 580 TMLTANRKGA---IKVLVL 595 (597)
Q Consensus 580 ~l~s~~~dg~---v~iwd~ 595 (597)
+|+.++.++. +.+|++
T Consensus 387 ~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEEEEcCCCceEEEEEEC
Confidence 9998877765 556654
No 230
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=3.7e-13 Score=120.21 Aligned_cols=260 Identities=18% Similarity=0.306 Sum_probs=174.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccC------CccCCCCc----eEecCCCceeEEEEecCC-CCEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNE------PRDVHYPM----VEMPTRSKLSCLSWNKYT-KNLIA 395 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~------~~~~~~~~----~~~~~~~~i~~v~~~~~~-~~~l~ 395 (597)
...+.|.+|.|+..|.+||||..+|.|.+|.-...... ....+.+. ....-...|..+.|.++. ...++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45678999999999999999999999999976543210 00011111 111224568899998743 34666
Q ss_pred EeeCCCcEEEEeCCCCee-----------------------------------eeEE-eeccceeEEEEeCCCCCceEEe
Q 042883 396 SSDYDGIVTIWDVTTSQS-----------------------------------VMEY-EEHEKRAWSVDFSCTEPSMLVS 439 (597)
Q Consensus 396 s~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~~l~s 439 (597)
..+.|.+|++|.+..... .+.+ ..|.--|++|.++. +...+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee
Confidence 677899999998743210 0111 24777899999997 7788887
Q ss_pred ecCCCcccCCCCeEEEEEccCCCcceee--eccCC-----CceEEEEecCC--CeEEEeeCCCcEEEEEcCCCc------
Q 042883 440 GSDDCKVGSADHHIHYYDLRNISQPLHV--FNGHK-----KAVSYVKFLSN--NELASASTDSSLRLWDVKENL------ 504 (597)
Q Consensus 440 ~~~d~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~-----~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~------ 504 (597)
+. |-.|.+|++.-..+.... ++.+. .-|++..|+|. +.|+-.+..|+|++-|+|...
T Consensus 182 AD--------dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 182 AD--------DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred cc--------ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 75 455999998754443322 33333 46888999998 889999999999999998421
Q ss_pred ceee----------eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc-CCccccccccCCCCC----CCcCcCCCcce
Q 042883 505 PLHT----------FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA-ISKPAASHRFGSDAD----HVDDDMGSYFI 569 (597)
Q Consensus 505 ~~~~----------~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~----~~~~~~h~~~i 569 (597)
.+.. |..--..|..+.|+++|+|+++-+. -+|++||+. ..+++.++....+.. .......-..-
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 1111 1112235778999999999987643 679999995 466666665432110 00000112233
Q ss_pred EEEEEccCCCeEEEecCcccEEEEEec
Q 042883 570 SAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 570 ~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..++|+.++.+++||+..+.+++|+++
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecCC
Confidence 568899999999999999999999853
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2e-12 Score=123.15 Aligned_cols=239 Identities=14% Similarity=0.174 Sum_probs=156.6
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEe-----eC----
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASS-----DY---- 399 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~-----~~---- 399 (597)
..+++..+++++|++++.+. +..|.|++.... ......... .++++.|+| -+++|.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~--------~~~lt~~~~-~~~~L~fSP-~g~yL~T~e~~~i~~~~~~ 102 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATL--------KVVLCVELK-KTYDLLFSP-KGNYLLTWEPWAIYGPKNA 102 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCC--------cEEEEeccc-eeeeeeecc-cccccccccccccccCCCC
Confidence 34467788999998888775 678999998776 123333333 788999999 67777652 11
Q ss_pred -CCcEEEEeCCCCeeeeEE----------------------------------------eeccceeEEEEeCCC-CCceE
Q 042883 400 -DGIVTIWDVTTSQSVMEY----------------------------------------EEHEKRAWSVDFSCT-EPSML 437 (597)
Q Consensus 400 -dg~i~iwd~~~~~~~~~~----------------------------------------~~~~~~v~~~~~~~~-~~~~l 437 (597)
.-.+.+|++.++.....+ .-|...|+.+.++|. ....+
T Consensus 103 ~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 103 SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred CCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence 235779988765221111 013456777777773 12233
Q ss_pred Eee--cCCCcc-----------------------------------------------------cCCCCeEEEEEccCCC
Q 042883 438 VSG--SDDCKV-----------------------------------------------------GSADHHIHYYDLRNIS 462 (597)
Q Consensus 438 ~s~--~~d~~~-----------------------------------------------------~~~d~~i~i~d~~~~~ 462 (597)
++- ..+|.- ...+.+++++++. +
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g 260 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--G 260 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--C
Confidence 321 111111 1111223333333 1
Q ss_pred cceeeeccCCCceEEEEecCCC-e--EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC---Cc
Q 042883 463 QPLHVFNGHKKAVSYVKFLSNN-E--LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET---NE 536 (597)
Q Consensus 463 ~~~~~~~~~~~~v~~v~~~~~~-~--l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~ 536 (597)
.....-....++|.++.|+|++ . ++.|-+-..+.|||++ +.+++.+. .++-+.+-|+|.|++|+.+|.+ |.
T Consensus 261 ~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 261 ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc
Confidence 1111111236899999999994 3 3446677889999987 77788775 5666889999999999988765 78
Q ss_pred EEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC------cccEEEEEec
Q 042883 537 VFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR------KGAIKVLVLA 596 (597)
Q Consensus 537 i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~------dg~v~iwd~~ 596 (597)
|-|||+.+.+.+..+.. ..-+-+.|+|||.+|+|++. |+.++||++.
T Consensus 338 mEvwDv~n~K~i~~~~a-------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKA-------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eEEEeccchhhcccccc-------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999888877763 33566889999999998754 7889999974
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.3e-12 Score=130.36 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=136.7
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC---CcEEEEeCCCCeeeeEEeeccceeEEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---GIVTIWDVTTSQSVMEYEEHEKRAWSV 427 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~ 427 (597)
..|.+||..+. .+.....+...+...+|+| +++.|+..+.+ ..|++||+.++.... +....+.....
T Consensus 184 ~~l~i~D~~g~--------~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~ 253 (433)
T PRK04922 184 YALQVADSDGY--------NPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAP 253 (433)
T ss_pred EEEEEECCCCC--------CceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCc
Confidence 35888887654 2333345567788999999 67777766533 469999998776533 33334455678
Q ss_pred EeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEee-CCCc--EEEEEcCCC
Q 042883 428 DFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDSS--LRLWDVKEN 503 (597)
Q Consensus 428 ~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~~--v~iwd~~~~ 503 (597)
+|+|++..++++.+.++ +..|++||+.+ +. +..+..+.......+|+|+ ..|+..+ .+|. |+++|+.++
T Consensus 254 ~~SpDG~~l~~~~s~~g-----~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 254 SFSPDGRRLALTLSRDG-----NPEIYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred eECCCCCEEEEEEeCCC-----CceEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99994444545555443 24699999986 33 4445555555678899999 5566554 4444 666677665
Q ss_pred cceeeeeCCCCceeEEEEeecCCEEEEEeCCC---cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 504 LPLHTFRGHTNEKNFVGLTVNNEYIACGSETN---EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 504 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
+. ..+..+......++|+|||++|+..+.++ .|.+||+.+++.... .. ........|+|+|++
T Consensus 327 ~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L-t~------------~~~~~~p~~spdG~~ 392 (433)
T PRK04922 327 SA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL-TP------------GSLDESPSFAPNGSM 392 (433)
T ss_pred Ce-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC-CC------------CCCCCCceECCCCCE
Confidence 53 33322233345689999999988765432 699999987765422 11 112345789999998
Q ss_pred EEEecCc---ccEEEEEe
Q 042883 581 MLTANRK---GAIKVLVL 595 (597)
Q Consensus 581 l~s~~~d---g~v~iwd~ 595 (597)
|+..+.+ +.|.++++
T Consensus 393 i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 393 VLYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEEecCCceEEEEEEC
Confidence 7765542 34666654
No 233
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=8.9e-13 Score=117.10 Aligned_cols=246 Identities=15% Similarity=0.251 Sum_probs=168.8
Q ss_pred CCCcEEEEEEcCCCCEEEEe-eCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDELFASA-GVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.-+.|.-+.|..|.-+++.+ ..++.|.+|++... .-.........++.++.|+|++..+|.+...+-.|.||
T Consensus 47 cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-------ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 47 CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-------EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVW 119 (447)
T ss_pred HHHHhhheeeeccceeeeeeeeccceEEEEEeecc-------eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEE
Confidence 34566678898888766555 55789999998765 11122223567899999999555777788889999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecC-CCcc----------------------------cCCCCeEEEEE
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD-DCKV----------------------------GSADHHIHYYD 457 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~~----------------------------~~~d~~i~i~d 457 (597)
.+.+..... +......+..++|+| ++++.+..+. |..- +-.++.+.+||
T Consensus 120 SL~t~~~~~-~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 120 SLNTQKGYL-LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred EeccceeEE-ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence 998755432 333445678899999 8887776654 3221 34445577887
Q ss_pred ccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcc-------------------------------
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLP------------------------------- 505 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~------------------------------- 505 (597)
.-- .-.+..+. -.-++..+.|+|. ..|++|+.|+.++|.+--+.+.
T Consensus 198 ~~L-eykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 198 NVL-EYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred chh-hheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 542 11111221 2246899999996 7799999999988865322110
Q ss_pred -----------------------------eeeee------CCCCceeEEEEeecCCEEEEEeC--CCcEEEEEccCCccc
Q 042883 506 -----------------------------LHTFR------GHTNEKNFVGLTVNNEYIACGSE--TNEVFVYHKAISKPA 548 (597)
Q Consensus 506 -----------------------------~~~~~------~~~~~v~~v~~s~~g~~l~~~~~--d~~i~iwd~~~~~~~ 548 (597)
++.++ .....+.-++|++|..|+++-.+ -+.+.+||++..+..
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~ 355 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH 355 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh
Confidence 00111 11224556899999999888654 367999999988776
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..+.. ..+|.+..|+|....|+.+.....+++|..+
T Consensus 356 avLiQ------------k~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 356 AVLIQ------------KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred hhhhh------------ccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 65543 6689999999999999888877789999653
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.6e-12 Score=131.51 Aligned_cols=220 Identities=10% Similarity=0.056 Sum_probs=138.4
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeC---CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGV---SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~d 400 (597)
+..+...+.+.+|+|||+.|+..+. +..|.+|++.++. ........+...+.+|+| +++.| ++.+.+
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~ 269 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPSFSP-DGRRLALTLSRD 269 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCceECC-CCCEEEEEEeCC
Confidence 3456778999999999999988764 3469999997761 111122233455789999 55544 555555
Q ss_pred C--cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecC-CCcccCCCCeEEEEEccCCCcceeeeccCCCceEE
Q 042883 401 G--IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD-DCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477 (597)
Q Consensus 401 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 477 (597)
| .|++||+.++... .+..+.......+|+| ++..++.+++ ++. ..|+++|+.. +. ...+..+......
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~-----~~iy~~dl~~-g~-~~~lt~~g~~~~~ 340 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGR-----PQIYRVAASG-GS-AERLTFQGNYNAR 340 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCC-----ceEEEEECCC-CC-eEEeecCCCCccC
Confidence 5 5999999887643 4445555567789999 6666655543 221 2477777765 33 2333223334457
Q ss_pred EEecCC-CeEEEeeCCC---cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC---CcEEEEEccCCccccc
Q 042883 478 VKFLSN-NELASASTDS---SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET---NEVFVYHKAISKPAAS 550 (597)
Q Consensus 478 v~~~~~-~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~ 550 (597)
.+|+|+ ..|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++..+ ....
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~ 417 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQR 417 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEE
Confidence 899999 5665544332 5999999877654 333 22344567999999988776553 45778887433 3333
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
+.. +.+.+..++|+|
T Consensus 418 l~~-----------~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVS-----------ADGEVREPAWSP 432 (433)
T ss_pred ccc-----------CCCCCCCCccCC
Confidence 321 134566777876
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.5e-12 Score=128.45 Aligned_cols=205 Identities=11% Similarity=0.122 Sum_probs=126.9
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC---CcEEEEeCCCCeeeeEEeeccceeEEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---GIVTIWDVTTSQSVMEYEEHEKRAWSV 427 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~ 427 (597)
..|.+||.++. .......+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++... +....+.+...
T Consensus 176 ~~L~~~D~dG~--------~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~ 245 (427)
T PRK02889 176 YQLQISDADGQ--------NAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAP 245 (427)
T ss_pred cEEEEECCCCC--------CceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccce
Confidence 35666666443 2223334567788999999 67777665532 359999998876543 33344556789
Q ss_pred EeCCCCCceE-EeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEee-CCCcEEEEEc--CC
Q 042883 428 DFSCTEPSML-VSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDSSLRLWDV--KE 502 (597)
Q Consensus 428 ~~~~~~~~~l-~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~~v~iwd~--~~ 502 (597)
+|+| ++..+ ++.+.++. ..|+++|+.. .....+..+........|+|+ ..|+..+ .+|...||.+ .+
T Consensus 246 ~~SP-DG~~la~~~~~~g~-----~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 246 AWSP-DGRTLAVALSRDGN-----SQIYTVNADG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EECC-CCCEEEEEEccCCC-----ceEEEEECCC--CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 9999 55554 45554443 2344445543 334555555555677889999 4555444 4566666655 34
Q ss_pred CcceeeeeCCCCceeEEEEeecCCEEEEEeCCC---cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC
Q 042883 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN---EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP 579 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 579 (597)
+.. ..+..........+|+|||++|+..+.++ .|.+||+.+++...... ......+.|+|+|+
T Consensus 318 g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-------------~~~~~~p~~spdg~ 383 (427)
T PRK02889 318 GAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-------------TTRDESPSFAPNGR 383 (427)
T ss_pred Cce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-------------CCCccCceECCCCC
Confidence 432 22222223334678999999998776554 69999998876543221 11235679999999
Q ss_pred eEEEecCc
Q 042883 580 TMLTANRK 587 (597)
Q Consensus 580 ~l~s~~~d 587 (597)
+|+.++.+
T Consensus 384 ~l~~~~~~ 391 (427)
T PRK02889 384 YILYATQQ 391 (427)
T ss_pred EEEEEEec
Confidence 88776543
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.4e-12 Score=128.39 Aligned_cols=220 Identities=9% Similarity=0.035 Sum_probs=138.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEee---CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEE-EeeCCC
Q 042883 326 FHAANIISSIEFDRDDELFASAG---VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIA-SSDYDG 401 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~-s~~~dg 401 (597)
..+...+.+.+|+|||+.|+..+ .+..|.+|++.++. ..........+..++|+| ++..|+ +.+.+|
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--------~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g 265 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAFSP-DGSKLAFALSKTG 265 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--------eEEccCCCCCcCCeEECC-CCCEEEEEEcCCC
Confidence 34567899999999999888654 24578999987651 111112233455689999 566555 444455
Q ss_pred --cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 402 --IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 402 --~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
.|++||+.++.... +..+...+....|+| ++..|+..+.++. .-.|+++|+.. + ....+..+........
T Consensus 266 ~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~~g----~~~Iy~~d~~~-g-~~~~lt~~~~~~~~~~ 337 (429)
T PRK03629 266 SLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQAG----RPQVYKVNING-G-APQRITWEGSQNQDAD 337 (429)
T ss_pred CcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCCCC----CceEEEEECCC-C-CeEEeecCCCCccCEE
Confidence 58899998876544 334445678899999 6666655543221 12355556654 2 2334433444556788
Q ss_pred ecCC-CeEEEeeCC---CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCc---EEEEEccCCccccccc
Q 042883 480 FLSN-NELASASTD---SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE---VFVYHKAISKPAASHR 552 (597)
Q Consensus 480 ~~~~-~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~---i~iwd~~~~~~~~~~~ 552 (597)
|+|+ ..|+..+.+ ..|.+||+.++.. ..+.. ........|+|||++|+.++.++. +.++++. |+....+.
T Consensus 338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~ 414 (429)
T PRK03629 338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP 414 (429)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence 9999 556554433 3588899987753 33332 122346789999999998887754 6777764 43333332
Q ss_pred cCCCCCCCcCcCCCcceEEEEEcc
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
.|.+.+...+|+|
T Consensus 415 -----------~~~~~~~~p~Wsp 427 (429)
T PRK03629 415 -----------ATDGQVKFPAWSP 427 (429)
T ss_pred -----------cCCCCcCCcccCC
Confidence 1356678888987
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.8e-12 Score=130.51 Aligned_cols=221 Identities=12% Similarity=0.079 Sum_probs=134.6
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCCC
Q 042883 326 FHAANIISSIEFDRDDELFASAGVS---RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDG 401 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg 401 (597)
..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++ .........+.+...+|+| +++.| ++.+.+|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g--------~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g 262 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG--------RRRVVANFKGSNSAPAWSP-DGRTLAVALSRDG 262 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC--------CEEEeecCCCCccceEECC-CCCEEEEEEccCC
Confidence 4567789999999999999877643 45999999876 1112222334566899999 55555 4667788
Q ss_pred cEEEEe--CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 402 IVTIWD--VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 402 ~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
...||. +.++. ...+..+........|+| ++..++..++. ++...+|.+...+.....+...........
T Consensus 263 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~ 334 (427)
T PRK02889 263 NSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDR------GGAPQIYRMPASGGAAQRVTFTGSYNTSPR 334 (427)
T ss_pred CceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecC------CCCcEEEEEECCCCceEEEecCCCCcCceE
Confidence 766665 44443 444545555567789999 66666554432 122455544321222222222223344678
Q ss_pred ecCC-CeEEEeeCCC---cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC---cEEEEEccCCccccccc
Q 042883 480 FLSN-NELASASTDS---SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN---EVFVYHKAISKPAASHR 552 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~ 552 (597)
|+|+ ..|+..+.++ .|.+||+.+++.. .+.. ........|+|||++|+.++.++ .+++.+. +++....+.
T Consensus 335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~ 411 (427)
T PRK02889 335 ISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS 411 (427)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee
Confidence 9999 5666555443 5999999877643 3332 22346789999999888776543 3555555 344333332
Q ss_pred cCCCCCCCcCcCCCcceEEEEEccC
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKSD 577 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~~ 577 (597)
. +.+.+...+|+|-
T Consensus 412 ~-----------~~g~~~~p~wsp~ 425 (427)
T PRK02889 412 V-----------QGGDVREPSWGPF 425 (427)
T ss_pred c-----------CCCCCCCCccCCC
Confidence 2 1445677788763
No 238
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.50 E-value=3e-13 Score=123.95 Aligned_cols=179 Identities=16% Similarity=0.283 Sum_probs=112.0
Q ss_pred CCCCcccccccccccccccccccccccHHHHHHhhc--------------------------------------------
Q 042883 35 VDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR-------------------------------------------- 70 (597)
Q Consensus 35 ~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~-------------------------------------------- 70 (597)
|+|||-||||..+|++|++|||||+.|+.|......
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~~~~ 80 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGG 80 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCccCC
Confidence 689999999999999999999999999999886432
Q ss_pred ----------------------------------CC------CCCCCCCCCCcccc-----ccchHHHHHHHHHHHHhhh
Q 042883 71 ----------------------------------NK------SDCPCCGCHLTCKH-----IFPNLLLNKLLKKTSARQV 105 (597)
Q Consensus 71 ----------------------------------~~------~~CP~Cr~~~~~~~-----l~~n~~~~~~~~~~~~~~~ 105 (597)
.+ -.||.|.+++-+++ ++.|+.+.++++.|+....
T Consensus 81 ~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~s~~ 160 (699)
T KOG4367|consen 81 FASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKA 160 (699)
T ss_pred eeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhhhhH
Confidence 00 02999999886654 7889999999999875432
Q ss_pred h----------------------------------ccCCch-------------------hhHhhhhhhc-ccccccchh
Q 042883 106 A----------------------------------NAASPI-------------------EHLRLALQQG-CEVSVKELD 131 (597)
Q Consensus 106 ~----------------------------------~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~ 131 (597)
. .+.++. .....|..|. +....+|..
T Consensus 161 aa~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ 240 (699)
T KOG4367|consen 161 AALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQ 240 (699)
T ss_pred HhhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEe
Confidence 0 000000 0012244443 445678999
Q ss_pred hhhhHHHHhhhhhH----H-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------HHHHH
Q 042883 132 GLLSLLVAKKRKLE----Q-----EEAETNMQILLNFLHCLRKQ---KLEELNEIQADLRCIEEDVY--------AVEKH 191 (597)
Q Consensus 132 ~~~~~~~~~~~~~~----~-----~~~~~~~~~l~~~l~~l~~~---~~~~~~~l~~~~~~~~~~~~--------~~~~~ 191 (597)
|+.++|..|..... + ..-..++.+|...|+.|..+ .++.+-+++...+.+++... +....
T Consensus 241 ck~pvc~~clee~khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q~d~l 320 (699)
T KOG4367|consen 241 CKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDAL 320 (699)
T ss_pred cCChHHHHHHHhhcccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999866422 1 12234444555555555442 23344444444444444433 34455
Q ss_pred HHHHHHHHHHHHHHHccccccc
Q 042883 192 KIELYRARGRCLAKLRTFDDFT 213 (597)
Q Consensus 192 ~~~l~~~~~~~~~~l~~~~~~~ 213 (597)
++.|..+..+++..+.++.+.+
T Consensus 321 id~l~~rk~qll~~v~~e~e~k 342 (699)
T KOG4367|consen 321 IDALNRRKAQLLARVNKEHEHK 342 (699)
T ss_pred HHHHHHHHHHHHHHhhhhhhhH
Confidence 6666666666666665554443
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=5.4e-12 Score=122.91 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=143.2
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEe-eCCCcEEEEeCCCC
Q 042883 333 SSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASS-DYDGIVTIWDVTTS 411 (597)
Q Consensus 333 ~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~ 411 (597)
..+.|+|||+++++++.||.|.++|+.+. .......-.....++++++ ++++++++ ..++.+.|+|..+.
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--------~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATG--------KVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSS--------SEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcc--------cEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeEeccccc
Confidence 45779999999999999999999999887 3444444556778899999 67777665 56899999999999
Q ss_pred eeeeEEeec-------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 412 QSVMEYEEH-------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 412 ~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+.+..+... ...+.++..+|....++++--+ .+.|.+.|......................|+|+
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-------~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-------TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-------TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEEcc-------CCeEEEEEeccccccceeeecccccccccccCccc
Confidence 988887532 2467788888744445554432 2347777766532222223233445667788888
Q ss_pred CeEEE-eeCCCcEEEEEcCCCcc-------------------------------------------------------ee
Q 042883 484 NELAS-ASTDSSLRLWDVKENLP-------------------------------------------------------LH 507 (597)
Q Consensus 484 ~~l~s-~~~d~~v~iwd~~~~~~-------------------------------------------------------~~ 507 (597)
.++++ ...++.|-++|..+++. +.
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 45444 34455666666655432 22
Q ss_pred eeeCCCCceeEEEEeecCCEEEEE----eCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 508 TFRGHTNEKNFVGLTVNNEYIACG----SETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 508 ~~~~~~~~v~~v~~s~~g~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
++....++ ..+..+|+++++++. ...+.|.++|..+.+.+..+..+. ...+..+.|+++|+++..
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~----------~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP----------GKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH----------T--EEEEEE-TTSSEEEE
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC----------CCcEeccEECCCCCEEEE
Confidence 22222222 346779999999988 445899999999987777665421 335899999999997655
Q ss_pred ec--CcccEEEEEecC
Q 042883 584 AN--RKGAIKVLVLAA 597 (597)
Q Consensus 584 ~~--~dg~v~iwd~~~ 597 (597)
.. .+|.|.|||-.+
T Consensus 333 S~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 333 SVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEE--TTEEEEEETTT
T ss_pred EEecCCCEEEEEECCC
Confidence 43 344799999653
No 240
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.49 E-value=9.9e-15 Score=129.13 Aligned_cols=74 Identities=27% Similarity=0.559 Sum_probs=67.6
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHhh
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQ 104 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~ 104 (597)
+.-.++.-|.|-||.|||+-|+++||||+||.-||..++...+.||.|+..+...+|+.|+.+..|++.|...+
T Consensus 16 slk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 34567778999999999999999999999999999999999999999999999999999999999999876543
No 241
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.48 E-value=4.8e-15 Score=97.51 Aligned_cols=61 Identities=25% Similarity=0.620 Sum_probs=34.9
Q ss_pred CCCCccccccccccccccccc-ccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHH
Q 042883 35 VDRDTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLL 97 (597)
Q Consensus 35 ~~~~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~ 97 (597)
+++-|.|++|.+++++||++. |.|+||..||...++. .||+|+.++...|++-|..+.+++
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhhhhhccC
Confidence 456789999999999999875 9999999999886653 499999999999999999998764
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=1.3e-12 Score=123.44 Aligned_cols=226 Identities=12% Similarity=0.176 Sum_probs=143.7
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCce-EecCCCceeEEEEec----CCCCEEEEeeCCCcEEE
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV-EMPTRSKLSCLSWNK----YTKNLIASSDYDGIVTI 405 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~~----~~~~~l~s~~~dg~i~i 405 (597)
.+....++-.|++|+-.- ...+++|++..+... ..++. ........+|-+|+. ..+--+++|-.-|.|.+
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~----~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~ 199 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADL----SKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQL 199 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchh----ccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEE
Confidence 445555555777776553 346888988754111 11111 111122334445532 14556888888899999
Q ss_pred EeCCCCeeeeEEe----eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEe-
Q 042883 406 WDVTTSQSVMEYE----EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKF- 480 (597)
Q Consensus 406 wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~- 480 (597)
+|.........+. -....|+++.|-|.+...|+.+- .+|.+++||... ....+.-.|
T Consensus 200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~-------~sGnlyly~~~~-----------~~~~t~p~~~ 261 (636)
T KOG2394|consen 200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAH-------ASGNLYLYDKEI-----------VCGATAPSYQ 261 (636)
T ss_pred ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEE-------ecCceEEeeccc-----------cccCCCCccc
Confidence 9876532221111 13478999999996666666665 455699998732 111111111
Q ss_pred -cCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCC
Q 042883 481 -LSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 481 -~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
.++ ..+......+ ..+..++..+..-.+.|+..+|+|||++||+.+.||.++|||..+.+.+..++.-
T Consensus 262 ~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---- 331 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---- 331 (636)
T ss_pred ccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh----
Confidence 122 2332221111 1122455555555668999999999999999999999999999988877655432
Q ss_pred CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 559 HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
-+...+|+|+|||+||++|+.|..|.||.+.
T Consensus 332 -------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 332 -------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred -------ccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 5679999999999999999999999999874
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=6.5e-12 Score=110.95 Aligned_cols=158 Identities=15% Similarity=0.345 Sum_probs=109.3
Q ss_pred EEEEcCCCCEEEEeeC----------CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEE--eeCCC
Q 042883 334 SIEFDRDDELFASAGV----------SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIAS--SDYDG 401 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s--~~~dg 401 (597)
.+.|+|+|++|++-.. -|...+|.++.. ............++|.+++|+| +++.|++ |..++
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~-----~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~ 83 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK-----NIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPA 83 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC-----CCccceeeccCCCceEEEEECc-CCCEEEEEEccCCc
Confidence 5789999988765433 234566666433 1122223334456799999999 5555443 44577
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEec
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 481 (597)
.|.+||++ ++.+..+. ...++.+.|+| +|+++++++.++ ..|.|.+||.++ .+.+.... | ..++.+.|+
T Consensus 84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n----~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~Ws 152 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGN----LNGDLEFWDVRK-KKKISTFE-H-SDATDVEWS 152 (194)
T ss_pred ccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccC----CCcEEEEEECCC-CEEeeccc-c-CcEEEEEEc
Confidence 99999996 56666663 46788999999 888888887543 367899999996 55665554 3 347899999
Q ss_pred CC-CeEEEee------CCCcEEEEEcCCCcceeee
Q 042883 482 SN-NELASAS------TDSSLRLWDVKENLPLHTF 509 (597)
Q Consensus 482 ~~-~~l~s~~------~d~~v~iwd~~~~~~~~~~ 509 (597)
|+ .+|++++ .|+.++||+.. |+.+...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 99 6677665 37889999985 6555543
No 244
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.46 E-value=3.5e-14 Score=118.64 Aligned_cols=57 Identities=30% Similarity=0.734 Sum_probs=48.5
Q ss_pred CCCCCcccccccccccccccccccccccHHHHHHhhcC----------------CCCCCCCCCCCccccccch
Q 042883 34 EVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN----------------KSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~----------------~~~CP~Cr~~~~~~~l~~n 90 (597)
...+++.|+||++.+++|++++|||+||..||.+|+.. ...||+||..+...++.|.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 45567999999999999999999999999999998742 2359999999988776654
No 245
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.8e-13 Score=133.92 Aligned_cols=108 Identities=22% Similarity=0.470 Sum_probs=81.2
Q ss_pred ccCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHhhhhccC
Q 042883 30 DRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQVANAA 109 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~ 109 (597)
.....+.++++|+||+++|++|++++|||+||+.||..+|.....||.||. ... .+.+|..+.++++.+.........
T Consensus 5 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~~~ 82 (386)
T KOG2177|consen 5 ALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSRPL 82 (386)
T ss_pred hhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcccc
Confidence 345677889999999999999999999999999999999995556999996 332 888999999999988654432222
Q ss_pred CchhhHhhhhhhcccccccchhhhhhHHHHhh
Q 042883 110 SPIEHLRLALQQGCEVSVKELDGLLSLLVAKK 141 (597)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (597)
.... ..|..|......+|..+....|..|.
T Consensus 83 ~~~~--~~c~~~~~~~~~~c~~~~~~~c~~c~ 112 (386)
T KOG2177|consen 83 GSKE--ELCEKHGEELKLFCEEDEKLLCVLCR 112 (386)
T ss_pred cccc--hhhhhcCCcceEEecccccccCCCCC
Confidence 2111 15666666566777777766666664
No 246
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.45 E-value=4.3e-12 Score=131.27 Aligned_cols=206 Identities=13% Similarity=0.177 Sum_probs=147.6
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC-------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS-------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV 446 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~ 446 (597)
...|...+..++.++..+.++++|+.||+|++||.+.- +...++..-..++..+.+.+ .++.+|.++.||
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG-- 1120 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDG-- 1120 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCC--
Confidence 34577788899998866799999999999999997531 22333333467788888888 777888877555
Q ss_pred cCCCCeEEEEEccCCC--c----ceeeeccC-CCceEEE-EecCC--C-eEEEeeCCCcEEEEEcCCCcceeeee--CCC
Q 042883 447 GSADHHIHYYDLRNIS--Q----PLHVFNGH-KKAVSYV-KFLSN--N-ELASASTDSSLRLWDVKENLPLHTFR--GHT 513 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~--~----~~~~~~~~-~~~v~~v-~~~~~--~-~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~ 513 (597)
.|++.++.... + .......+ .+.+.++ ++... . .++.+..-+.|..||+++.....+++ ...
T Consensus 1121 -----~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1121 -----SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred -----eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 48999887511 1 11111122 2333333 33332 3 67888888999999999865554443 345
Q ss_pred CceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC---CeEEEe-c-Ccc
Q 042883 514 NEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS---PTMLTA-N-RKG 588 (597)
Q Consensus 514 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~---~~l~s~-~-~dg 588 (597)
+.|++++.+|.+.++++|+..|.+.+||++-+.++.....+. ..+|+.+..+|-. .+.+++ . ..+
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~----------~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA----------RAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc----------cCCcceEEeeccCCCCceEEEecccCCC
Confidence 789999999999999999999999999999999998887753 5778888877633 455554 4 578
Q ss_pred cEEEEEecC
Q 042883 589 AIKVLVLAA 597 (597)
Q Consensus 589 ~v~iwd~~~ 597 (597)
-|-+|++.+
T Consensus 1266 evs~wn~~~ 1274 (1431)
T KOG1240|consen 1266 EVSTWNMET 1274 (1431)
T ss_pred ceeeeeccc
Confidence 899999853
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.9e-12 Score=121.30 Aligned_cols=203 Identities=16% Similarity=0.271 Sum_probs=147.6
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee----------------------------eEEeec----
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV----------------------------MEYEEH---- 420 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------------------------~~~~~~---- 420 (597)
..+.+...-+.|..+|++..++++|..--.|++||+..-.+- ..+.-|
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 445677888999999966667788888899999998643110 000001
Q ss_pred -------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCC
Q 042883 421 -------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTD 492 (597)
Q Consensus 421 -------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d 492 (597)
...-.+++++.....+++.|+ ...|+-+++.. +.-+..+....+.++.+..++- ++|++|+.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gs--------g~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGS--------GSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeec--------CcceEEEEccc-cccccccccccccceeeeecCccceEEecccC
Confidence 012234444433444444443 23378888887 7777777777789999999998 889999999
Q ss_pred CcEEEEEcCCCcceeeee------CCCC-----ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc
Q 042883 493 SSLRLWDVKENLPLHTFR------GHTN-----EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD 561 (597)
Q Consensus 493 ~~v~iwd~~~~~~~~~~~------~~~~-----~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 561 (597)
|.|..||.+....+.++. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++.....+
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~------- 269 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG------- 269 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC-------
Confidence 999999999877666654 2333 3899999999999999999999999999999998766543
Q ss_pred CcCCCcceEEEEEccC--CCeEEEecCcccEEEEEe
Q 042883 562 DDMGSYFISAVCWKSD--SPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~--~~~l~s~~~dg~v~iwd~ 595 (597)
...+|..+.|.+. +..+++. ....++|||-
T Consensus 270 ---~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 270 ---YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred ---CccceeeecccccCCCceEEec-chHHhhhccc
Confidence 2778999999775 3445554 3567899984
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=8.4e-13 Score=140.98 Aligned_cols=201 Identities=16% Similarity=0.288 Sum_probs=161.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCce--EecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV--EMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
++-..|.++.=+|...+.+||+.||.|++|....+ ..+. .......|+.+.|+. .|+.+..+..||.+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--------~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--------QQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLS 2276 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCC--------CeEEEeeccCcchhhhhhhcc-cCCceeeeccCCcee
Confidence 45677888888888889999999999999998765 2221 223348899999998 678888888899999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+|.+. .+.....+.|+....++.|.. ..+++++... .++++.+||..-+...-..-..|.+.++.+++.|.
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~----d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSS----DNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeee---hhhhccccCC----CCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence 99976 567777778998899999973 7777777533 57889999976433332333789999999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
..|++||.+|.|.+||++..+.+++++. ++ ...++++|+..|.++||++..-..+++++..
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 8899999999999999999888888764 44 5678999999999999999887777766653
No 249
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.44 E-value=4.6e-14 Score=87.63 Aligned_cols=38 Identities=47% Similarity=1.159 Sum_probs=33.8
Q ss_pred ccccccccccc-ccccccccccHHHHHHhhcCCCCCCCC
Q 042883 41 CPICKQLMTDA-FMTACGHSFCYTCIFTHLRNKSDCPCC 78 (597)
Q Consensus 41 C~IC~~~f~~P-~~l~CgH~FC~~Cl~~~~~~~~~CP~C 78 (597)
|+||++.+.+| +.++|||+||+.|+++|++....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 688999999999999999997779998
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=4.9e-12 Score=110.88 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=146.3
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC-C
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT-T 410 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~-~ 410 (597)
..++.|++.+.-++++..+|.+.+-+.... ..........|...++..+|+....+++++|+.|+.+.-||++ .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 457888998988999999999985544333 1122223446788899999998788999999999999999998 3
Q ss_pred CeeeeE-EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEE
Q 042883 411 SQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELA 487 (597)
Q Consensus 411 ~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~ 487 (597)
++.+.. .+.|...|.+|.-+|..+.+++||+.|-. |++||.|+.++++..-. ..+.|+.+.++|. +.++
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-------i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL 270 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-------IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLL 270 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccc-------eeeeehhcccCccccCc-cccceEEEEecchhhhHHH
Confidence 444443 45688999999999989999999997655 99999998888877654 4588999999998 5555
Q ss_pred EeeCCCcEEEEEcCCC--c---ceeeeeCCCCceeEEEEeecCCEEEEEe-CCCcEE-EEEccCC
Q 042883 488 SASTDSSLRLWDVKEN--L---PLHTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVF-VYHKAIS 545 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~--~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~-iwd~~~~ 545 (597)
.+..-+-.+|-+...+ + .....+.|.+-.+.-.|.....+|++++ .|+.++ +|-..++
T Consensus 271 ~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 271 AACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 5555555777777653 2 3344456666666666755456788765 466644 6654443
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=7.4e-11 Score=119.76 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=133.1
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC---CcEEEEeCCCCeeeeEEeeccceeEEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---GIVTIWDVTTSQSVMEYEEHEKRAWSV 427 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~ 427 (597)
..|.++|..+. .......+...+...+|+| +++.|+.+..+ ..|++||+.++.... +..+...+..+
T Consensus 170 ~~l~~~d~~g~--------~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~ 239 (417)
T TIGR02800 170 YELQVADYDGA--------NPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAP 239 (417)
T ss_pred ceEEEEcCCCC--------CCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccce
Confidence 35777776543 2333334555788899999 67777766543 479999998875433 33445567779
Q ss_pred EeCCCCCc-eEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeC-CC--cEEEEEcCC
Q 042883 428 DFSCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAST-DS--SLRLWDVKE 502 (597)
Q Consensus 428 ~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~-d~--~v~iwd~~~ 502 (597)
+|+| ++. ++++.+.++ +..|++||+.+ + ....+..+........|+|+ ..|+..+. ++ .|++||+.+
T Consensus 240 ~~sp-Dg~~l~~~~~~~~-----~~~i~~~d~~~-~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 240 AFSP-DGSKLAVSLSKDG-----NPDIYVMDLDG-K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EECC-CCCEEEEEECCCC-----CccEEEEECCC-C-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9999 555 445544332 34589999885 3 33444445455567789999 55655443 33 577888876
Q ss_pred CcceeeeeCCCCceeEEEEeecCCEEEEEeCCC---cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC
Q 042883 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN---EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP 579 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 579 (597)
++. ..+..+......+.|+|+|++|+.++.++ .|.+||+.++....... ........|+|+|+
T Consensus 312 ~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-------------~~~~~~p~~spdg~ 377 (417)
T TIGR02800 312 GEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-------------TGLDESPSFAPNGR 377 (417)
T ss_pred CCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-------------CCCCCCceECCCCC
Confidence 653 34444455567889999999998887765 78899987754322211 11234468999999
Q ss_pred eEEEecCcc
Q 042883 580 TMLTANRKG 588 (597)
Q Consensus 580 ~l~s~~~dg 588 (597)
+|+..+.++
T Consensus 378 ~l~~~~~~~ 386 (417)
T TIGR02800 378 MILYATTRG 386 (417)
T ss_pred EEEEEEeCC
Confidence 888766544
No 252
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=2.1e-10 Score=126.49 Aligned_cols=255 Identities=16% Similarity=0.147 Sum_probs=159.7
Q ss_pred EEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCC------ceEecCCCceeEEEEecCCCCEE-EEeeCCCcE
Q 042883 332 ISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYP------MVEMPTRSKLSCLSWNKYTKNLI-ASSDYDGIV 403 (597)
Q Consensus 332 v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~------~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg~i 403 (597)
...++++++ +.++++-..++.|++||..+........... ......-....+|++++ +++.| ++-..++.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 357889874 6677777788999999986541100000000 00001123467899998 45544 444556789
Q ss_pred EEEeCCCCeeeeEEeec-----------------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee
Q 042883 404 TIWDVTTSQSVMEYEEH-----------------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH 466 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~ 466 (597)
+++|+.++. +.++.+. -...++++++|.++.++++.+. ++.|++||... +. +.
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------~~~I~v~d~~~-g~-v~ 718 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------QHQIWEYNISD-GV-TR 718 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------CCeEEEEECCC-Ce-EE
Confidence 999987654 3333210 1235689999866677777654 44589999875 22 22
Q ss_pred eecc---------------CCCceEEEEecCC-C-eEEEeeCCCcEEEEEcCCCcceeee-------------eCC----
Q 042883 467 VFNG---------------HKKAVSYVKFLSN-N-ELASASTDSSLRLWDVKENLPLHTF-------------RGH---- 512 (597)
Q Consensus 467 ~~~~---------------~~~~v~~v~~~~~-~-~l~s~~~d~~v~iwd~~~~~~~~~~-------------~~~---- 512 (597)
.+.+ .-.....|+++|+ + .+++.+.++.|++||+.++...... ...
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 2211 1124567999998 4 4566677899999999875432111 000
Q ss_pred ----CCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC--CCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 513 ----TNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD--ADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 513 ----~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
.....+++++++|.++++.+.++.|++||..++........+.. ............+.+|+++++|+++++.+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 11246899999999888888999999999987765533322210 000001112346789999999999999999
Q ss_pred cccEEEEEecC
Q 042883 587 KGAIKVLVLAA 597 (597)
Q Consensus 587 dg~v~iwd~~~ 597 (597)
++.|++||+++
T Consensus 879 Nn~Irvid~~~ 889 (1057)
T PLN02919 879 NSLIRYLDLNK 889 (1057)
T ss_pred CCEEEEEECCC
Confidence 99999999863
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=3.3e-11 Score=105.80 Aligned_cols=249 Identities=15% Similarity=0.163 Sum_probs=166.9
Q ss_pred CCcEEEEEEcC---CCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCC-CceeEEEEecCCCCEEEEeeCCCcE
Q 042883 329 ANIISSIEFDR---DDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTR-SKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 329 ~~~v~~i~~~~---~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+..+.|.. +|. .++-+..+|.|.+|........... .+.....-. ....++.|++ .+..++++..+|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L--~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL--RGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee--cccchhhhhheeeeEEEeec-cCceEEEEcCCCcE
Confidence 34566777764 455 5566777899999987654111000 000000001 1245788998 77889999889999
Q ss_pred EEEeCCCCee--eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEe
Q 042883 404 TIWDVTTSQS--VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKF 480 (597)
Q Consensus 404 ~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~ 480 (597)
.+-+...... ++..+.|.-.++-..|+-.+++++.+||+|+. +..||+|.++..+-. .+-|...|.++.-
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-------l~~~D~R~p~~~i~~n~kvH~~GV~SI~s 218 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-------LSCWDIRIPKTFIWHNSKVHTSGVVSIYS 218 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-------EEEEEecCCcceeeecceeeecceEEEec
Confidence 9666555433 45788999999999999888899999997766 999999965544433 4568899999998
Q ss_pred cCC--CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeec--CCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 481 LSN--NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVN--NEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 481 ~~~--~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~--g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
+|. .+|++|+.|-.|++||.|+ ++++..-. -.+.|+.+.++|. +..++++-.+| .+|-+...+.......+.
T Consensus 219 s~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~- 295 (339)
T KOG0280|consen 219 SPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLP- 295 (339)
T ss_pred CCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeee-
Confidence 877 6799999999999999995 77777654 3588999999996 33444443333 666666544332111111
Q ss_pred CCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEE-EEEe
Q 042883 556 DADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIK-VLVL 595 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~-iwd~ 595 (597)
....|.+-...-.|.....+|+|++ .|+.++ +|-.
T Consensus 296 -----s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 296 -----SDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred -----ccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 1123466666777765556788865 577755 7753
No 254
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.4e-12 Score=118.63 Aligned_cols=222 Identities=15% Similarity=0.231 Sum_probs=160.4
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE-eeccceeEEEEeCCCCC-ceEEeecCCCcc----
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY-EEHEKRAWSVDFSCTEP-SMLVSGSDDCKV---- 446 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~l~s~~~d~~~---- 446 (597)
.+.+|.+-|..|.|+. .+..+++|+.|..|.+||...+.....+ .+|...|..-.|.|..+ .-+++++.||.+
T Consensus 137 kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3446889999999998 7999999999999999999888776665 47888888888888543 568888888887
Q ss_pred -----------------------------------cCCCCeEEEEEccCCCcceeee---ccCCC---ceEEEEecCC--
Q 042883 447 -----------------------------------GSADHHIHYYDLRNISQPLHVF---NGHKK---AVSYVKFLSN-- 483 (597)
Q Consensus 447 -----------------------------------~~~d~~i~i~d~~~~~~~~~~~---~~~~~---~v~~v~~~~~-- 483 (597)
.+.|+.+.-+|++. ..+...+ ..+.. ...+++.+|.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~-~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ-DVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeecc-CCccceeeeeccCCccceeeeeEecCCCCc
Confidence 77888888899887 4333332 22333 5678888887
Q ss_pred CeEEEeeCCCcEEEEEcCCC------cceeeeeC------CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 484 NELASASTDSSLRLWDVKEN------LPLHTFRG------HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~------~~~~~~~~------~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
+.+++|+.|..+++||.+.- .++.++-. ..-.|++++|+.+|.-+.++-.|-.|++|....+.-....
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 68999999999999998752 22333322 2336899999988777777778888999965443221111
Q ss_pred ccC---CCCCC-CcCcCCCcceEEEE-EccCCCeEEEecCcccEEEEEec
Q 042883 552 RFG---SDADH-VDDDMGSYFISAVC-WKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 552 ~~~---~~~~~-~~~~~h~~~i~~v~-~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
... ..... ..++.....|.++- |-|...|+++|+.-|.|.||+-.
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 111 11111 11222355688887 57889999999999999999853
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=2.3e-11 Score=124.30 Aligned_cols=194 Identities=18% Similarity=0.125 Sum_probs=145.9
Q ss_pred ceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccc----eeEEEEeCCCCCceEEeecCCCcccCCCCeEEE
Q 042883 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEK----RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i 455 (597)
.|....+.- ....++.+..++.+.+||...+.....+..... ...-+.+++ +.-++++|+- -+.|.+
T Consensus 89 wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv-------~~~iiv 159 (967)
T KOG0974|consen 89 WIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSV-------FGEIIV 159 (967)
T ss_pred cccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccc-------cccEEE
Confidence 344434443 466778888889999999887665555432211 122233444 5567777663 455999
Q ss_pred EEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCccee-eeeCCCCceeEEEEeecCCEEEEEeC
Q 042883 456 YDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~ 533 (597)
|+......+. .+.+|.+.|.++.|+.+ +++++.|.|.++++|++.+.+... ...+|+..+..+.|.|+ .+++++.
T Consensus 160 W~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge 236 (967)
T KOG0974|consen 160 WKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE 236 (967)
T ss_pred EeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc
Confidence 9998533444 68899999999999999 889999999999999999987776 66789999999999998 8999999
Q ss_pred CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 534 TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 534 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|.+.++|+..... +..+.. +-...|+.++..++..+++|++.||.+++||+.
T Consensus 237 dctcrvW~~~~~~-l~~y~~----------h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 237 DCTCRVWGVNGTQ-LEVYDE----------HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ceEEEEEecccce-ehhhhh----------hhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999999654332 222221 125679999999999999999999999999863
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=2.4e-10 Score=110.18 Aligned_cols=192 Identities=15% Similarity=0.214 Sum_probs=148.0
Q ss_pred cCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEe------c-------------CCCCEEEEee
Q 042883 338 DRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWN------K-------------YTKNLIASSD 398 (597)
Q Consensus 338 ~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~------~-------------~~~~~l~s~~ 398 (597)
.|...++|....||.++||+...+...... .+.. .-.+.-++..|. | .+...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~--~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF--APIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeee--ccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 345678999999999999999876111100 1111 112333344442 1 1456788899
Q ss_pred CCCcEEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceE
Q 042883 399 YDGIVTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVS 476 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 476 (597)
..|.|.+|++..|+....+. .|.+.|+.+.++. +-..|.+++.|+. +..|+... .+.+..+......+.
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~-------v~~~~~~~-~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLK-------VVYILEKE-KVIIRIWKEQKPLVS 148 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCcee-------EEEEeccc-ceeeeeeccCCCccc
Confidence 99999999999998888775 5899999999986 7888999886554 89999987 778888888888899
Q ss_pred EEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec-----CCEEEEE-eCCCcEEEEEccC
Q 042883 477 YVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN-----NEYIACG-SETNEVFVYHKAI 544 (597)
Q Consensus 477 ~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~-----g~~l~~~-~~d~~i~iwd~~~ 544 (597)
+++++|| ..+++++ +.|++||+.+++.+..|.||.++|++++|..+ |.+++++ ..+..+.+|-+..
T Consensus 149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999 6777776 68999999999999999999999999999887 7776654 4456677887654
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=6.3e-11 Score=114.06 Aligned_cols=186 Identities=15% Similarity=0.177 Sum_probs=145.4
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeeEEeec---cceeEEEEeC------CC-------------CCceEEeecCCCccc
Q 042883 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEH---EKRAWSVDFS------CT-------------EPSMLVSGSDDCKVG 447 (597)
Q Consensus 390 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~------~~-------------~~~~l~s~~~d~~~~ 447 (597)
...++|....||.++|||...++....|... .+..++..|. |. +...++- |
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl-------g 76 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL-------G 76 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe-------e
Confidence 5678899999999999999988877666431 2233333332 10 1122332 4
Q ss_pred CCCCeEEEEEccCCCcceeeec--cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec
Q 042883 448 SADHHIHYYDLRNISQPLHVFN--GHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN 524 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~ 524 (597)
...|.|.+|+... +..-..+. .|.+.|.++.++.+ +.|.+++.|+.+..|+....+.++.+......+.+++++||
T Consensus 77 t~~g~v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 77 TPQGSVLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred cCCccEEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 4667799999987 54444443 58999999999988 99999999999999999999999999988888999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccC-----CCeEEE-ecCcccEEEEEec
Q 042883 525 NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSD-----SPTMLT-ANRKGAIKVLVLA 596 (597)
Q Consensus 525 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-----~~~l~s-~~~dg~v~iwd~~ 596 (597)
|.++++++ +.|.+||+.+++.+..+. +|.++|..+.|..+ |.++.+ ...+..+.+|-++
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~ft-----------gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITFT-----------GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEec-----------CCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99999887 789999999999988876 68999999999876 666655 4556667888654
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=1.5e-10 Score=117.59 Aligned_cols=199 Identities=10% Similarity=0.062 Sum_probs=128.5
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCC-EEEEeeCC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVS---RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKN-LIASSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~-~l~s~~~d 400 (597)
+..+...+...+|+|||++|+.+..+ ..|++|++.++ .......+...+.+++|+| +++ ++++.+.+
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--------~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~ 255 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--------QREKVASFPGMNGAPAFSP-DGSKLAVSLSKD 255 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--------CEEEeecCCCCccceEECC-CCCEEEEEECCC
Confidence 44566678899999999999887643 47999998776 1122223345566789999 555 44555544
Q ss_pred C--cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 401 G--IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 401 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
+ .|++||+.++... .+..+........|+| ++..++..+..+ ....|+++|+.. +. ...+..+...+...
T Consensus 256 ~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~-dg~~l~~~s~~~----g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSP-DGKSIAFTSDRG----GSPQIYMMDADG-GE-VRRLTFRGGYNASP 327 (417)
T ss_pred CCccEEEEECCCCCEE-ECCCCCCCCCCEEECC-CCCEEEEEECCC----CCceEEEEECCC-CC-EEEeecCCCCccCe
Confidence 4 5888998876543 3334444556778999 666655444322 123588888875 33 33344345567788
Q ss_pred EecCC-CeEEEeeCCC---cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC---cEEEEEc
Q 042883 479 KFLSN-NELASASTDS---SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN---EVFVYHK 542 (597)
Q Consensus 479 ~~~~~-~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~ 542 (597)
.|+|+ ..++.++.++ .|.+||+.++.. ..+... .......|+|+|++|+.++.++ .+++++.
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 99999 6677766665 789999887543 333322 2234568999999888776653 3555553
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=2.1e-11 Score=124.55 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=148.8
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS 411 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 411 (597)
|....+.-....++.++.+..+.+||...+..... ........- ....-+-+++ +.-++++|+--+.|.+|+....
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~-i~~~er~~l--~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSK-IQSDERCTL--YSSLIIGDSA-EELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehh-cCCCceEEE--EeEEEEeccC-cEEEEEeccccccEEEEecccc
Confidence 33344444667788888899999999877611111 011000000 0111122344 4668999999999999998744
Q ss_pred eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeC
Q 042883 412 QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASAST 491 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~ 491 (597)
+....+.+|.+.|.++.|+. ++.++++.|+|.. +++|++.+......+.-+|...|+.+.|+|. ++++++.
T Consensus 166 n~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRs-------iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~ge 236 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRS-------IRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGE 236 (967)
T ss_pred CCcceecccCCceEEEEEcc-CCcEEEEEecCcc-------eeeeecccccccCcccccccceeEEEEeccc-eeEEecc
Confidence 44446789999999999997 9999999997666 9999999844444466689999999999998 9999999
Q ss_pred CCcEEEEEcCCCcceeeeeCCCC-ceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 492 DSSLRLWDVKENLPLHTFRGHTN-EKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 492 d~~v~iwd~~~~~~~~~~~~~~~-~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
|-+.++|+.. +..+..+.+|.+ .+..++..++...+++++.||.+++|++..
T Consensus 237 dctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 237 DCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999765 555567777754 688999999999999999999999999764
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.3e-10 Score=113.61 Aligned_cols=212 Identities=12% Similarity=0.089 Sum_probs=129.6
Q ss_pred cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC---CcEEEEeCCCCeeeeEEeeccceeEEEE
Q 042883 352 RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---GIVTIWDVTTSQSVMEYEEHEKRAWSVD 428 (597)
Q Consensus 352 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~ 428 (597)
.|.++|.++. .......+...+...+|+| +++.|+..+.+ ..|.+||+.++.... +....+.+....
T Consensus 180 ~l~~~d~~g~--------~~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~ 249 (430)
T PRK00178 180 TLQRSDYDGA--------RAVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPA 249 (430)
T ss_pred EEEEECCCCC--------CceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeE
Confidence 4666777654 2333345567788999999 56666654433 368999998875433 333334456789
Q ss_pred eCCCCCceEE-eecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEee-CCC--cEEEEEcCCC
Q 042883 429 FSCTEPSMLV-SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDS--SLRLWDVKEN 503 (597)
Q Consensus 429 ~~~~~~~~l~-s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~--~v~iwd~~~~ 503 (597)
|+| ++..++ +.+.++ +..|++||+.+ + ....+..+........|+|+ ..|+..+ .+| .|++||+.++
T Consensus 250 ~Sp-DG~~la~~~~~~g-----~~~Iy~~d~~~-~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 250 WSP-DGSKLAFVLSKDG-----NPEIYVMDLAS-R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred ECC-CCCEEEEEEccCC-----CceEEEEECCC-C-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 999 555544 554433 24589999986 3 33445445555667889999 5555444 333 4777788776
Q ss_pred cceeeeeCCCCceeEEEEeecCCEEEEEeCC-C--cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 504 LPLHTFRGHTNEKNFVGLTVNNEYIACGSET-N--EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 504 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
+... +...........|+|||++|+..+.+ + .|.+||+.+++....... .......|+|+|++
T Consensus 322 ~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-------------~~~~~p~~spdg~~ 387 (430)
T PRK00178 322 RAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-------------SLDESPSVAPNGTM 387 (430)
T ss_pred CEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-------------CCCCCceECCCCCE
Confidence 6432 22222223457899999998876543 3 588899887764332211 11124589999998
Q ss_pred EEEecC-ccc--EEEEEe
Q 042883 581 MLTANR-KGA--IKVLVL 595 (597)
Q Consensus 581 l~s~~~-dg~--v~iwd~ 595 (597)
|+..+. +|. |.++++
T Consensus 388 i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEEecCCceEEEEEEC
Confidence 876543 333 444443
No 261
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.32 E-value=6e-13 Score=88.04 Aligned_cols=47 Identities=36% Similarity=0.831 Sum_probs=41.6
Q ss_pred CCccccccccccccccccccccc-ccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 37 RDTLCPICKQLMTDAFMTACGHS-FCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~l~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
|+..|+||++.+.+++.+||||. ||..|+.+++.....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46899999999999999999999 999999999998888999999864
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.5e-10 Score=115.43 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=129.2
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeC-CC--cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCCC
Q 042883 326 FHAANIISSIEFDRDDELFASAGV-SR--RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDG 401 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg 401 (597)
..+...+.+..|+|||+.|+..+. ++ .|.+||+.++. ..............+|+| +++.| ++.+.+|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--------~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g 284 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--------REKVTSFPGINGAPRFSP-DGKKLALVLSKDG 284 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--------eEEecCCCCCcCCeeECC-CCCEEEEEEeCCC
Confidence 345667889999999998887654 23 58888887651 111111123345689999 55545 4556666
Q ss_pred c--EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeec-CCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 402 I--VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGS-DDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 402 ~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
. |++||+.+++.. .+..+.......+|+| ++..++..+ .++ ...|+++|+.+ +.. ..+..........
T Consensus 285 ~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g-----~~~Iy~~dl~~-g~~-~~Lt~~g~~~~~~ 355 (448)
T PRK04792 285 QPEIYVVDIATKALT-RITRHRAIDTEPSWHP-DGKSLIFTSERGG-----KPQIYRVNLAS-GKV-SRLTFEGEQNLGG 355 (448)
T ss_pred CeEEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCC-----CceEEEEECCC-CCE-EEEecCCCCCcCe
Confidence 5 778888776543 3444555667889999 565554443 222 24577788775 332 2222122223456
Q ss_pred EecCC-CeEEEeeC-CC--cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC-CC--cEEEEEccCCcccccc
Q 042883 479 KFLSN-NELASAST-DS--SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE-TN--EVFVYHKAISKPAASH 551 (597)
Q Consensus 479 ~~~~~-~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~--~i~iwd~~~~~~~~~~ 551 (597)
+|+|+ ..|+..+. ++ .|.++|+.++.. ..+... .......|+|||++|+..+. +| .+++++. +++....+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 89999 55555443 44 355678777654 233322 12234589999998776554 33 3677776 44444333
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
..+ .+.+...+|+|
T Consensus 433 ~~~-----------~g~~~~p~Wsp 446 (448)
T PRK04792 433 PAG-----------QGEVKSPAWSP 446 (448)
T ss_pred cCC-----------CCCcCCCccCC
Confidence 321 34566778876
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=2.1e-09 Score=105.18 Aligned_cols=246 Identities=10% Similarity=0.150 Sum_probs=153.6
Q ss_pred CcEEEEEEcCCCCEEEEeeC----CCcEEEEecccCccCCccCCCCceEec-CCCceeEEEEecCCCCEEEEee-CCCcE
Q 042883 330 NIISSIEFDRDDELFASAGV----SRRIKIFEFSSVVNEPRDVHYPMVEMP-TRSKLSCLSWNKYTKNLIASSD-YDGIV 403 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~~l~s~~-~dg~i 403 (597)
....-++++|++++|.+... +|.|..|++....... ....... .......++++| ++.+|+++. .+|.|
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L----~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v 111 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL----TLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSV 111 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE----EEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee----EEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeE
Confidence 34566889999999988866 5789999887531111 1111111 345667899999 566666664 58999
Q ss_pred EEEeCCC-CeeeeE---Ee--e--------ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee---
Q 042883 404 TIWDVTT-SQSVME---YE--E--------HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH--- 466 (597)
Q Consensus 404 ~iwd~~~-~~~~~~---~~--~--------~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~--- 466 (597)
.+|++.. +..... +. + ....+..+.|+| +++++++.... ...|.+|++......+.
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG------~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLG------ADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETT------TTEEEEEEE-TTS-TEEEEE
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecC------CCEEEEEEEeCCCceEEEee
Confidence 9999976 333222 11 1 124567899999 77766665421 23599999986332222
Q ss_pred eec-cCCCceEEEEecCC-CeE-EEeeCCCcEEEEEcC--CCc--ceeeeeC----C--CCceeEEEEeecCCEEEEEe-
Q 042883 467 VFN-GHKKAVSYVKFLSN-NEL-ASASTDSSLRLWDVK--ENL--PLHTFRG----H--TNEKNFVGLTVNNEYIACGS- 532 (597)
Q Consensus 467 ~~~-~~~~~v~~v~~~~~-~~l-~s~~~d~~v~iwd~~--~~~--~~~~~~~----~--~~~v~~v~~s~~g~~l~~~~- 532 (597)
.+. ........++|+|+ .++ ++.-.++.|.+|++. ++. .+..+.. . ......|.++|||++|+++.
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 34466889999999 444 555678889999988 332 2222221 1 12467899999999988765
Q ss_pred CCCcEEEEEcc--CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEec
Q 042883 533 ETNEVFVYHKA--ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 533 ~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
..+.|.+|++. +++....-.... .......++++|+|++|++++ .++.|.+|+++
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~---------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPT---------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEE---------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeC---------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 46789999994 233322211110 134589999999999988765 67789999986
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.8e-10 Score=111.30 Aligned_cols=223 Identities=11% Similarity=0.058 Sum_probs=130.2
Q ss_pred CCCcEEEEEEcCCCCEE---EEeeCCC--cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee-CCC
Q 042883 328 AANIISSIEFDRDDELF---ASAGVSR--RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-YDG 401 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l---~t~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~dg 401 (597)
....+.+-.|+|||+.+ ++...+| .|.+.++.++ .........+.....+|+| +++.|+..+ .+|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g--------~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g 253 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP--------AGKKILALQGNQLMPTFSP-RKKLLAFISDRYG 253 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC--------CceEeecCCCCccceEECC-CCCEEEEEECCCC
Confidence 34456677999999752 2443343 4777777765 1122222344455689999 565555433 333
Q ss_pred ----cEEEEeCCCC---eeeeEEeeccceeEEEEeCCCCCceEEeec-CCCcccCCCCeEEEEEccCCCcceeeeccCCC
Q 042883 402 ----IVTIWDVTTS---QSVMEYEEHEKRAWSVDFSCTEPSMLVSGS-DDCKVGSADHHIHYYDLRNISQPLHVFNGHKK 473 (597)
Q Consensus 402 ----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 473 (597)
.+.+|++..+ .......+........+|+| ++..|+..+ .++. ..|+++++...+.....+..+..
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~-----~~ly~~~~~~~g~~~~~lt~~~~ 327 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGR-----PRIYIMQIDPEGQSPRLLTKKYR 327 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCC-----ceEEEEECcccccceEEeccCCC
Confidence 3444676542 32333323233456789999 666555443 3332 23555555432233444444445
Q ss_pred ceEEEEecCC-CeEEEeeCC---CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC---CCcEEEEEccCCc
Q 042883 474 AVSYVKFLSN-NELASASTD---SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE---TNEVFVYHKAISK 546 (597)
Q Consensus 474 ~v~~v~~~~~-~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~---d~~i~iwd~~~~~ 546 (597)
.+....|+|+ ..|+..+.+ ..|.+||+.+++.. .+......+....|+|||++|+..+. ...|++||+..++
T Consensus 328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 6778899999 556554432 36999999887653 33333345678999999998775433 3568889988776
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCC
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDS 578 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 578 (597)
....... .+.+...+|+|-.
T Consensus 407 ~~~Lt~~------------~g~~~~p~Ws~~~ 426 (428)
T PRK01029 407 TRKIVIG------------SGEKRFPSWGAFP 426 (428)
T ss_pred EEEeecC------------CCcccCceecCCC
Confidence 5433321 3346677888754
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=9.7e-10 Score=110.20 Aligned_cols=221 Identities=13% Similarity=0.119 Sum_probs=128.5
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCC--EEEEeeCCC--cEEEEeCCCCeeeeEEeeccceeEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKN--LIASSDYDG--IVTIWDVTTSQSVMEYEEHEKRAWS 426 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~ 426 (597)
..|.+.|.++. .+............-+|+|++.. ++++...+| .|.+.++.+++... +....+....
T Consensus 165 ~~l~~~d~dG~--------~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~ 235 (428)
T PRK01029 165 GELWSVDYDGQ--------NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLM 235 (428)
T ss_pred ceEEEEcCCCC--------CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccc
Confidence 35666666654 12222223445566799994333 333544444 57788887765433 3333445567
Q ss_pred EEeCCCCCceEEe-ecCCCcccCCCCeEEEEEccCC--CcceeeeccCCCceEEEEecCC-CeEEEee-CCCcEEEE--E
Q 042883 427 VDFSCTEPSMLVS-GSDDCKVGSADHHIHYYDLRNI--SQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDSSLRLW--D 499 (597)
Q Consensus 427 ~~~~~~~~~~l~s-~~~d~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~~v~iw--d 499 (597)
.+|+| +++.|+. ...++. .+..+.+|++..+ +........+.+.....+|+|+ ..|+..+ .+|...|| +
T Consensus 236 p~wSP-DG~~Laf~s~~~g~---~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 236 PTFSP-RKKLLAFISDRYGN---PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred eEECC-CCCEEEEEECCCCC---cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 89999 6655554 432332 2434555777642 2333333333344567899999 4455544 56655555 4
Q ss_pred cCC-CcceeeeeCCCCceeEEEEeecCCEEEEEeCC---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc
Q 042883 500 VKE-NLPLHTFRGHTNEKNFVGLTVNNEYIACGSET---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 500 ~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 575 (597)
+.. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++....... ...+....|+
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------------~~~~~~p~wS 379 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------------PENKESPSWA 379 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------------CCCccceEEC
Confidence 432 23344454444566788999999988766543 4699999988876433221 2245678999
Q ss_pred cCCCeEEE-ecC--cccEEEEEec
Q 042883 576 SDSPTMLT-ANR--KGAIKVLVLA 596 (597)
Q Consensus 576 ~~~~~l~s-~~~--dg~v~iwd~~ 596 (597)
|||++|+. +.. .+.|.+||++
T Consensus 380 pDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 380 IDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECC
Confidence 99998764 332 3457777764
No 266
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.31 E-value=6.2e-13 Score=82.56 Aligned_cols=35 Identities=37% Similarity=1.073 Sum_probs=22.9
Q ss_pred cccccccccc----cccccccccccHHHHHHhhcCC----CCCC
Q 042883 41 CPICKQLMTD----AFMTACGHSFCYTCIFTHLRNK----SDCP 76 (597)
Q Consensus 41 C~IC~~~f~~----P~~l~CgH~FC~~Cl~~~~~~~----~~CP 76 (597)
||||.+ |.+ |++|+|||+||+.||++++... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 998 9999999999999999999843 3477
No 267
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-12 Score=105.03 Aligned_cols=51 Identities=37% Similarity=0.866 Sum_probs=45.2
Q ss_pred cccccccccccc--cccccccccccHHHHHHhhcCCCCCCCCCCCCccccccc
Q 042883 39 TLCPICKQLMTD--AFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89 (597)
Q Consensus 39 l~C~IC~~~f~~--P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~ 89 (597)
..|||||+-|.+ ||...|||.||+.||+..+.....||+||+....+.+.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 779999999995 678899999999999999999999999999887666543
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=1.6e-11 Score=120.52 Aligned_cols=241 Identities=16% Similarity=0.265 Sum_probs=169.3
Q ss_pred EEEEEEcCCC--CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 332 ISSIEFDRDD--ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 332 v~~i~~~~~~--~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
|-.+.|+|.. .+-++......-.+|++...... .......+|...|+.+.|+|+....+++++.|..+..||++
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~----aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN----AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCcc----ceEEEEecCccceeccccCCCCCcceeeccccccceeeecc
Confidence 5567787743 34455555666778998765111 12234557889999999999989999999999999999998
Q ss_pred CCe-eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeE
Q 042883 410 TSQ-SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NEL 486 (597)
Q Consensus 410 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l 486 (597)
+.. ++..+..-......++|+..++..+++.. .+.|.+||++.++.++..+++|...|+++.|+.- +.+
T Consensus 146 Sp~~p~ys~~~w~s~asqVkwnyk~p~vlassh--------g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 146 SPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH--------GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred CCCcceeeeecccccCceeeecccCcchhhhcc--------CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh
Confidence 753 45555444556778999987778777653 2349999999999999999999999999999877 789
Q ss_pred EEeeCCCcEEEEEcCCCc--ceeeeeCCCCceeEEEEeecCC--EEEEEeCCCcEEEEEccCC----------ccccccc
Q 042883 487 ASASTDSSLRLWDVKENL--PLHTFRGHTNEKNFVGLTVNNE--YIACGSETNEVFVYHKAIS----------KPAASHR 552 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~v~~s~~g~--~l~~~~~d~~i~iwd~~~~----------~~~~~~~ 552 (597)
.+++.||+|+.||..... .-+.+. ...+|..-.+-|-|. ++.---.+..|.+++.++. .+++.+.
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~ 296 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV 296 (1081)
T ss_pred cccCCCCceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec
Confidence 999999999999987532 222222 344566666666543 2222222235555554432 2333332
Q ss_pred cCCCCCCCcCcCCCcceEEEEEccCC----------CeEEEecCcccEEEEEec
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKSDS----------PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~~~----------~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|....|-..+ -.|+|-+.|..+++|-++
T Consensus 297 -----------GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 297 -----------GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred -----------CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 467777777774322 259999999999999885
No 269
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-12 Score=112.93 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=68.0
Q ss_pred cccccccCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHH
Q 042883 25 TAVEVDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSA 102 (597)
Q Consensus 25 ~~~~~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~ 102 (597)
.....++.-.++-.|.|-||-++|+-|+..+|||+||.-||.+++...+.||+||.......++.++.+..+.+.+..
T Consensus 12 ~~T~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 12 NQTKIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred ccccCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 333445556777789999999999999999999999999999999999999999999998889999988888876653
No 270
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.7e-10 Score=113.37 Aligned_cols=220 Identities=10% Similarity=0.076 Sum_probs=132.3
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCC---CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEE-EeeCC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVS---RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIA-SSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~-s~~~d 400 (597)
+..+...+....|+|||+.|+..+.+ ..|.+|++.++. ........+.+...+|+| +++.|+ +...+
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--------~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~ 264 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--------REQITNFEGLNGAPAWSP-DGSKLAFVLSKD 264 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--------EEEccCCCCCcCCeEECC-CCCEEEEEEccC
Confidence 34567789999999999998776543 368889987761 111112233455689999 565554 55555
Q ss_pred C--cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceE-EeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEE
Q 042883 401 G--IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSML-VSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477 (597)
Q Consensus 401 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 477 (597)
| .|++||+.++... .+..+........|+| ++..+ ++...++ ...|+++|+.+ +.. ..+.........
T Consensus 265 g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g-----~~~iy~~d~~~-g~~-~~lt~~~~~~~~ 335 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGG-----KPQIYKVNVNG-GRA-ERVTFVGNYNAR 335 (430)
T ss_pred CCceEEEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCC-----CceEEEEECCC-CCE-EEeecCCCCccc
Confidence 5 5888899877543 3444555567789999 55544 4433222 24588888875 332 222211223345
Q ss_pred EEecCC-CeEEEeeC-CC--cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC-C--cEEEEEccCCccccc
Q 042883 478 VKFLSN-NELASAST-DS--SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET-N--EVFVYHKAISKPAAS 550 (597)
Q Consensus 478 v~~~~~-~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-~--~i~iwd~~~~~~~~~ 550 (597)
..|+|+ +.|+..+. ++ .|.+||+.+++. ..+.. ........|+|||++|+..+.+ | .|.++++..+. ...
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~ 412 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLP 412 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEE
Confidence 789999 55655443 33 488899887754 33322 2223356899999988776543 3 46677764332 222
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
+.. +.+.+...+|+|
T Consensus 413 l~~-----------~~g~~~~p~ws~ 427 (430)
T PRK00178 413 LPT-----------AQGEVREPSWSP 427 (430)
T ss_pred CcC-----------CCCCcCCCccCC
Confidence 221 134466677876
No 271
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.29 E-value=6.1e-13 Score=85.39 Aligned_cols=40 Identities=35% Similarity=0.891 Sum_probs=35.8
Q ss_pred cccccccccc---ccccccccccccHHHHHHhhcCCCCCCCCC
Q 042883 40 LCPICKQLMT---DAFMTACGHSFCYTCIFTHLRNKSDCPCCG 79 (597)
Q Consensus 40 ~C~IC~~~f~---~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr 79 (597)
.|+||++.|. .++.++|||.||..||.+|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999996 468889999999999999999988999997
No 272
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.28 E-value=1.7e-12 Score=82.21 Aligned_cols=38 Identities=42% Similarity=1.114 Sum_probs=35.0
Q ss_pred cccccccccccc-cccccccccHHHHHHhhc--CCCCCCCC
Q 042883 41 CPICKQLMTDAF-MTACGHSFCYTCIFTHLR--NKSDCPCC 78 (597)
Q Consensus 41 C~IC~~~f~~P~-~l~CgH~FC~~Cl~~~~~--~~~~CP~C 78 (597)
|+||++.+.+|+ +++|||+||..||.+|+. +...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 999999999999999999 44559988
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.3e-09 Score=110.29 Aligned_cols=212 Identities=9% Similarity=0.061 Sum_probs=125.0
Q ss_pred cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee-CCC--cEEEEeCCCCeeeeEEeeccceeEEEE
Q 042883 352 RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-YDG--IVTIWDVTTSQSVMEYEEHEKRAWSVD 428 (597)
Q Consensus 352 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~ 428 (597)
.|.++|.++. .......+...+....|+| +++.|+..+ .++ .|++||+.+++... +....+.....+
T Consensus 199 ~l~i~d~dG~--------~~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~ 268 (448)
T PRK04792 199 QLMIADYDGY--------NEQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPR 268 (448)
T ss_pred EEEEEeCCCC--------CceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCee
Confidence 5666676554 2223334566788899999 566666543 333 58889998776432 222233445789
Q ss_pred eCCCCCceE-EeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEee-CCC--cEEEEEcCCC
Q 042883 429 FSCTEPSML-VSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDS--SLRLWDVKEN 503 (597)
Q Consensus 429 ~~~~~~~~l-~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~--~v~iwd~~~~ 503 (597)
|+| ++..| ++.+.++ ...|++||+.+ + ....+..+........|+|+ ..|+..+ .++ .|.++|+.++
T Consensus 269 wSP-DG~~La~~~~~~g-----~~~Iy~~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 269 FSP-DGKKLALVLSKDG-----QPEIYVVDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred ECC-CCCEEEEEEeCCC-----CeEEEEEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 999 55544 4444433 23588888875 3 34445445556678899999 4554443 344 4666777766
Q ss_pred cceeeeeCCCCceeEEEEeecCCEEEEEeC-CC--cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 504 LPLHTFRGHTNEKNFVGLTVNNEYIACGSE-TN--EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 504 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
+... +..........+|+|||++|+..+. ++ .|.++|+.+++...... . .......|+|+|++
T Consensus 341 ~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~------------~~d~~ps~spdG~~ 406 (448)
T PRK04792 341 KVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-T------------RLDESPSVAPNGTM 406 (448)
T ss_pred CEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-C------------CCCCCceECCCCCE
Confidence 5433 3222222345789999998877654 34 45667777765432211 0 01123479999998
Q ss_pred EEEec-Cccc--EEEEEe
Q 042883 581 MLTAN-RKGA--IKVLVL 595 (597)
Q Consensus 581 l~s~~-~dg~--v~iwd~ 595 (597)
|+..+ .+|. +.++++
T Consensus 407 I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EEEEEecCCceEEEEEEC
Confidence 76644 3443 555554
No 274
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.27 E-value=2.6e-09 Score=104.27 Aligned_cols=192 Identities=14% Similarity=0.151 Sum_probs=125.2
Q ss_pred CEE-EEeeCCCcEEEEecccCccCCccCCCCceEecCCCc-eeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee
Q 042883 342 ELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE 419 (597)
Q Consensus 342 ~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 419 (597)
+++ ++-..+|.|.|.|..+. ........... ...+.|+| +++++++++.||.|.++|+.+++.+.++..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred cEEEEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence 344 45556899999998775 33333333333 34467888 788888889999999999999999988865
Q ss_pred ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-------CCCceEEEEecCC-CeEEEeeC
Q 042883 420 HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-------HKKAVSYVKFLSN-NELASAST 491 (597)
Q Consensus 420 ~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~v~~v~~~~~-~~l~s~~~ 491 (597)
.....++++++ ++++++++.. ..+.+.++|..+ .+++..+.. ....+.++..+|. ..++..-.
T Consensus 77 -G~~~~~i~~s~-DG~~~~v~n~------~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 77 -GGNPRGIAVSP-DGKYVYVANY------EPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp -SSEEEEEEE---TTTEEEEEEE------ETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred -CCCcceEEEcC-CCCEEEEEec------CCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 44578899999 7777776653 355699999987 667776643 2346778887888 54555554
Q ss_pred -CCcEEEEEcCCCccee-eeeCCCCceeEEEEeecCCEEEEE-eCCCcEEEEEccCCcccccc
Q 042883 492 -DSSLRLWDVKENLPLH-TFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 492 -d~~v~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~ 551 (597)
.+.|.+.|....+.+. .............|+|+|+|++++ ..++.|-++|..+++.+..+
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 4778888877654432 222234556789999999987665 45678889998877655543
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=3.8e-10 Score=106.65 Aligned_cols=241 Identities=13% Similarity=0.144 Sum_probs=152.1
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC-------
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD------- 400 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d------- 400 (597)
-.-++..+.|||.|.+|++.... .|.+|..... .....+. ...|..+.|+| .+.+|.+-+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~--------~~l~~~~-~~~V~~~~fSP-~~kYL~tw~~~pi~~pe~ 99 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSK--------AKLVRFR-HPDVKYLDFSP-NEKYLVTWSREPIIEPEI 99 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccch--------hheeeee-cCCceecccCc-ccceeeeeccCCccChhh
Confidence 34478889999999999987654 4889987655 2222223 35688899999 78888886543
Q ss_pred --------CcEEEEeCCCCeeeeEEeecc---------------------------------------------ceeEEE
Q 042883 401 --------GIVTIWDVTTSQSVMEYEEHE---------------------------------------------KRAWSV 427 (597)
Q Consensus 401 --------g~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~v~~~ 427 (597)
+.+.+||+.+|..+..+.... ..|...
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeE
Confidence 349999998886554433211 235555
Q ss_pred EeCCC-CCceEEeecC-----CCcc----------------------------------------------cCCCCeEEE
Q 042883 428 DFSCT-EPSMLVSGSD-----DCKV----------------------------------------------GSADHHIHY 455 (597)
Q Consensus 428 ~~~~~-~~~~l~s~~~-----d~~~----------------------------------------------~~~d~~i~i 455 (597)
.|+|. ++..|+.-.. ++.+ .....+++|
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 56652 1112221111 0000 111233444
Q ss_pred EEccCCCcceeeeccCCCceEEEEecCC-CeEE--EeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe
Q 042883 456 YDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA--SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~--s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
+++.. ..+.......++|...+|.|. +.++ +|-.+..+.++|++.. ..+.+. ...-+.+.|+|.+++++.++
T Consensus 260 ~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 260 LRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred Eeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEec
Confidence 44442 222222244678999999998 5544 4558889999999865 444443 33446788999999999987
Q ss_pred CC---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec------CcccEEEEEec
Q 042883 533 ET---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN------RKGAIKVLVLA 596 (597)
Q Consensus 533 ~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~------~dg~v~iwd~~ 596 (597)
.| |.+-+||......+...-. .....-+.|+|+|.++.+.. .|..|+|||+.
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~------------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFN------------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CCccccceEEeccCCceEEEEEee------------cCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 76 6899999876554442221 22345567999999987753 48889999984
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.26 E-value=1.4e-09 Score=94.40 Aligned_cols=238 Identities=13% Similarity=0.113 Sum_probs=154.5
Q ss_pred EEEEEcC-----CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 333 SSIEFDR-----DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 333 ~~i~~~~-----~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
..+.|-| .-.+||.|+..|...+|...+.. .+. .....+...|+-+.-.-+...-+..++.|.++++.+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-----~h~-~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~ 144 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-----GHL-YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV 144 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcc-----cce-eeecccccchhhhhhhcccccceeeccCCcceeEEE
Confidence 3566666 34579999999999999988651 111 111122222222221112334567778899999998
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-ee-eeccCCCceEEEEecCC-C
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LH-VFNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~v~~v~~~~~-~ 484 (597)
+..+..-.......-.+.++++++ ++.++++.++... |..|.+...+.. +. ......+.-.+..|+.. .
T Consensus 145 ~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~-------Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 145 VSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRR-------VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL 216 (344)
T ss_pred EecCcccceeeccccceeeeEEcC-CCceEEEecCCCc-------ceEEEeCCccceeeeeEecccCCCceeeeeccCcc
Confidence 865543333322223488999998 8899988886554 888888764333 23 22334455678888887 7
Q ss_pred eEEEeeCCCcEEEEEcCCCc-cee----eeeCCCCceeEEEEeecCC--EEEEEeCCCcEEEEEccCCccccccccCCCC
Q 042883 485 ELASASTDSSLRLWDVKENL-PLH----TFRGHTNEKNFVGLTVNNE--YIACGSETNEVFVYHKAISKPAASHRFGSDA 557 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~-~~~----~~~~~~~~v~~v~~s~~g~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 557 (597)
.+|++..||++.|||+|... +.. +-..|.+.+..+.|++.|. +|...-.-+.+++.|+++++....+......
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 79999999999999999732 222 2346889999999998765 4555556688999999998876665544322
Q ss_pred CCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 558 DHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
.. .+....|..-.|+.++.-+.+.+.+
T Consensus 297 ~~---~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 297 ER---KHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cc---cccccccccccccCCCcccccccch
Confidence 11 1124458888888877666655544
No 277
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=1.7e-10 Score=103.46 Aligned_cols=255 Identities=17% Similarity=0.236 Sum_probs=161.9
Q ss_pred CCcEEEEEEcCCC--CEEEEeeCCCcEEEEecccCccCCcc--------------CCCC---------------ceEecC
Q 042883 329 ANIISSIEFDRDD--ELFASAGVSRRIKIFEFSSVVNEPRD--------------VHYP---------------MVEMPT 377 (597)
Q Consensus 329 ~~~v~~i~~~~~~--~~l~t~~~d~~v~iw~~~~~~~~~~~--------------~~~~---------------~~~~~~ 377 (597)
...|..+.|.+++ ..++..+.|.+|++|.+......... ...+ .....|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 4578888998855 46777888999999998654222100 0000 111246
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe-e--eeEEee-----ccceeEEEEeCCCCCceEEeecCCCcccCC
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-S--VMEYEE-----HEKRAWSVDFSCTEPSMLVSGSDDCKVGSA 449 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~--~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~ 449 (597)
...|.++.++. +...++++. |=.|.+|++.-.. . +-.++. -..-|++..|+|...+.|+-.+..|
T Consensus 164 tyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG----- 236 (433)
T KOG1354|consen 164 TYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG----- 236 (433)
T ss_pred eeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC-----
Confidence 77799999997 677777764 7889999986322 1 222222 2346899999998778888777544
Q ss_pred CCeEEEEEccCCCcce---------------eeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEc-CCCcceeeeeCCC
Q 042883 450 DHHIHYYDLRNISQPL---------------HVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDV-KENLPLHTFRGHT 513 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~---------------~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~ 513 (597)
+|++-|+|...-+. ..|..--..|..+.|+++|.++..-.--+|++||+ ...+++.+++.|.
T Consensus 237 --tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 237 --TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred --cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehH
Confidence 49999999421111 11112224688999999955555455569999999 4577888877653
Q ss_pred C------------ce---eEEEEeecCCEEEEEeCCCcEEEEEccCCcccc-ccccCC-------------CC-CCCc--
Q 042883 514 N------------EK---NFVGLTVNNEYIACGSETNEVFVYHKAISKPAA-SHRFGS-------------DA-DHVD-- 561 (597)
Q Consensus 514 ~------------~v---~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~-------------~~-~~~~-- 561 (597)
. .| .-++|+.++.++++|+..+.+++|+...|.... ...... .. ++..
T Consensus 315 ~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~ 394 (433)
T KOG1354|consen 315 YLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKR 394 (433)
T ss_pred hHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccc
Confidence 2 12 247899899999999999999999955432111 000000 00 0000
Q ss_pred ------CcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 562 ------DDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 562 ------~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
.-.-...|...+|+|....+|.+..++ ++||
T Consensus 395 ~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 395 DEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred cccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 000133566789999999888877654 5554
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=9e-11 Score=115.35 Aligned_cols=227 Identities=16% Similarity=0.253 Sum_probs=162.9
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCC--CceeEEEEecCC-CCEEEEeeCCCcEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTR--SKLSCLSWNKYT-KNLIASSDYDGIVT 404 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~i~~v~~~~~~-~~~l~s~~~dg~i~ 404 (597)
-.+++.++..+|.|+-+++++.-| +.+.|++... .+-....|. -.|-.+.|+|.. ..+-++......-.
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~-------~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai 94 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF-------TPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI 94 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCC-------CCceeeeccCcchhcceecccCCCCceeEEecCcchhh
Confidence 345788999999999999998665 5677877651 222222222 245667787743 23334444455667
Q ss_pred EEeCCCC---eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEec
Q 042883 405 IWDVTTS---QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 405 iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 481 (597)
+|++... ..-..+.+|...|+++.|+|+...++++++-|.. ++.||++++..++..+..-......|+|+
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-------vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-------VHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccc-------ceeeeccCCCcceeeeecccccCceeeec
Confidence 8987532 3344567899999999999999999999996554 99999999888888777666677899998
Q ss_pred CC-CeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCccccccccCCCCC
Q 042883 482 SN-NELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
-- ..+++.+..+.|.+||.+. +.++..+++|...|+.+.|..- ...+.+.+.||+|++||..............
T Consensus 168 yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt--- 244 (1081)
T KOG0309|consen 168 YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT--- 244 (1081)
T ss_pred ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc---
Confidence 76 6677778888999999987 5688899999999999988654 3467888999999999987543322222111
Q ss_pred CCcCcCCCcceEEEEEccCCC
Q 042883 559 HVDDDMGSYFISAVCWKSDSP 579 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~ 579 (597)
..+|+--.+.|-|.
T Consensus 245 -------~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 245 -------NFPIWRGRYLPFGE 258 (1081)
T ss_pred -------cCcceeccccccCc
Confidence 55677767777544
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=7.9e-09 Score=98.35 Aligned_cols=236 Identities=10% Similarity=0.083 Sum_probs=138.3
Q ss_pred EcCCCCEEEEeeC----------CCcEEEEecccCccCCccCCCCce-EecCCCceeEEEEecCCCCEEEEee-C-CCcE
Q 042883 337 FDRDDELFASAGV----------SRRIKIFEFSSVVNEPRDVHYPMV-EMPTRSKLSCLSWNKYTKNLIASSD-Y-DGIV 403 (597)
Q Consensus 337 ~~~~~~~l~t~~~----------d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~~~~~~~l~s~~-~-dg~i 403 (597)
++|||+.|+++.. +..|.+||..+..... ....+.. ..........++++| +++++++.. . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEE
Confidence 9999998877765 7889999999871110 0000000 000122334688999 677777665 3 6899
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce-e---eeccCCCceEEE-
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL-H---VFNGHKKAVSYV- 478 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~-~---~~~~~~~~v~~v- 478 (597)
.++|+.+++.+..+.- .+...-...++ +..+ +-+ . ||......+...++.. . .+.+-..++..-
T Consensus 131 ~VvD~~~~kvv~ei~v-p~~~~vy~t~e-~~~~-~~~-~-------Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDV-PDCYHIFPTAN-DTFF-MHC-R-------DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred EEEECCCCcEEEEEeC-CCCcEEEEecC-CccE-EEe-e-------cCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 9999999999888754 22222223322 2222 212 1 2333333333222211 0 111100000000
Q ss_pred EecC-CCeEEEeeCCCcEEEEEcCCC-----cceeeeeC-------CCCceeEEEEeecCCEEEEEe----------CCC
Q 042883 479 KFLS-NNELASASTDSSLRLWDVKEN-----LPLHTFRG-------HTNEKNFVGLTVNNEYIACGS----------ETN 535 (597)
Q Consensus 479 ~~~~-~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~-------~~~~v~~v~~s~~g~~l~~~~----------~d~ 535 (597)
.+.+ ++..+-.+..|+|.+.|+... .....+.. ..+....++++++|+.+++.. ..+
T Consensus 200 ~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 200 AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 3344 544443344499999996442 22222211 123334599999998877742 225
Q ss_pred cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEec-CcccEEEEEecC
Q 042883 536 EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTAN-RKGAIKVLVLAA 597 (597)
Q Consensus 536 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~-~dg~v~iwd~~~ 597 (597)
.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.|+|+.+
T Consensus 280 ~V~ViD~~t~kvi~~i~v------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIEL------------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEEEECCCCeEEEEEeC------------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 799999999999988876 44789999999999 777665 688899999753
No 280
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.22 E-value=5.9e-12 Score=110.99 Aligned_cols=50 Identities=30% Similarity=0.785 Sum_probs=42.7
Q ss_pred CCCCCccccccccccccc--------ccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 34 EVDRDTLCPICKQLMTDA--------FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P--------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
...++..|+||++.|.+| +..+|||.||+.||.+|......||+||..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 344578999999988764 45679999999999999998888999999876
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=3e-10 Score=100.52 Aligned_cols=258 Identities=17% Similarity=0.299 Sum_probs=165.4
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCc-cCCc-----cCCCCc----eEecCCCceeEEEEecC-CCCEEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVV-NEPR-----DVHYPM----VEMPTRSKLSCLSWNKY-TKNLIAS 396 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~-~~~~-----~~~~~~----~~~~~~~~i~~v~~~~~-~~~~l~s 396 (597)
....|+++.|...|.++++|...|.|.+|.-.... .... ..+.+. ....-...|..+.|..+ +.+.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999765431 0000 001110 11112346888888753 3456777
Q ss_pred eeCCCcEEEEeCCCCe-------------------------------------ee-----eEE-eeccceeEEEEeCCCC
Q 042883 397 SDYDGIVTIWDVTTSQ-------------------------------------SV-----MEY-EEHEKRAWSVDFSCTE 433 (597)
Q Consensus 397 ~~~dg~i~iwd~~~~~-------------------------------------~~-----~~~-~~~~~~v~~~~~~~~~ 433 (597)
.+.|.+|++|.+.... .+ +.+ ..|.--|+++.|+. +
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-D 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-c
Confidence 7789999999864320 00 001 24666788999987 7
Q ss_pred CceEEeecCCCcccCCCCeEEEEEccCCCcce--eeeccCC-----CceEEEEecCC--CeEEEeeCCCcEEEEEcCCCc
Q 042883 434 PSMLVSGSDDCKVGSADHHIHYYDLRNISQPL--HVFNGHK-----KAVSYVKFLSN--NELASASTDSSLRLWDVKENL 504 (597)
Q Consensus 434 ~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~-----~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~ 504 (597)
...++++. |-.|.+|++.-..... ..++.|. .-|++..|+|. +.+.-.+..|.|++-|+|...
T Consensus 184 ~et~lSaD--------dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 184 KETLLSAD--------DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred hheeeecc--------ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 77777764 4458999987544332 2334444 35888999998 778888999999999998421
Q ss_pred ------ceee----------eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC-ccccccccCCCC----CCCcCc
Q 042883 505 ------PLHT----------FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS-KPAASHRFGSDA----DHVDDD 563 (597)
Q Consensus 505 ------~~~~----------~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~----~~~~~~ 563 (597)
.+.. +.+-...|..+.|+++|+||++-+. -+|+|||.+.. .++.+.+..... ......
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 1111 1122346778999999999987654 67999999864 455555432110 000000
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.--..-..+.|+.+...+.+|+..+..-||-+
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeecc
Confidence 00112234778888888888888777777654
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=9.7e-11 Score=125.74 Aligned_cols=187 Identities=17% Similarity=0.291 Sum_probs=147.9
Q ss_pred cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 376 PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
.+-..|.++.-+| ...+.++|+.||.|++|....++.+..++. -++.|+.+.|+. .|+.+..+.. ||.+.
T Consensus 2206 ~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~-------dg~l~ 2276 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDG-------DGDLS 2276 (2439)
T ss_pred cccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeecc-------CCcee
Confidence 3445677787788 677899999999999999988887766642 237899999998 5555555443 56699
Q ss_pred EEEccCCCcceeeeccCCCceEEEEecCCCeEEEe---eCCCcEEEEEcCC---CcceeeeeCCCCceeEEEEeecCCEE
Q 042883 455 YYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASA---STDSSLRLWDVKE---NLPLHTFRGHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 455 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~---~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l 528 (597)
+|... .++......|......+.|-. ..++++ +.++.+.+||..- ...+. ..|.+.++++++-|..+.|
T Consensus 2277 l~q~~--pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2277 LWQAS--PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred ecccC--CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEE
Confidence 99987 578888888998888888866 344544 3578899999754 22333 7899999999999999999
Q ss_pred EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 529 ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 529 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
++||.+|.|.+||++..+.++.+.. ++ ...+|++|+..|.++||+++.
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~~~--------------------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQA--------------------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHhhh--------------------hh-hhheeeccCcccceEEEEccc
Confidence 9999999999999998888777651 45 567899999999999999863
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.8e-09 Score=107.09 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=78.6
Q ss_pred cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeC----------CCcEEEEEcCCCcceee--ee-CCC
Q 042883 447 GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASAST----------DSSLRLWDVKENLPLHT--FR-GHT 513 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~--~~-~~~ 513 (597)
|+..|+|.++|+.+ +.....+..|.+.|.++.|.....|++.+. -+.+.|-|+++|..... ++ ...
T Consensus 443 GT~sGTV~vvdvst-~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de 521 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVST-NAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE 521 (1062)
T ss_pred ecCCceEEEEEecc-hhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc
Confidence 89999999999997 677778888999999999987755665432 34578899998754332 22 345
Q ss_pred CceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 514 NEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 514 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
.+|..+..|..|+|++..-.+.-+.+||+++..
T Consensus 522 spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 522 SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred CcceeeeecccCceEEEEecccchHHHhhccch
Confidence 689999999999999999999999999986644
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.8e-09 Score=102.17 Aligned_cols=207 Identities=14% Similarity=0.270 Sum_probs=137.9
Q ss_pred CCCcEEEEEEcCCC--CEEEE-----eeCCCcEEEEecccCccCCccCCCCceEec-CCCceeEEEEecCCCCEEEEeeC
Q 042883 328 AANIISSIEFDRDD--ELFAS-----AGVSRRIKIFEFSSVVNEPRDVHYPMVEMP-TRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 328 ~~~~v~~i~~~~~~--~~l~t-----~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
|...|+.+.++|.+ ..+|+ +|.-+.|+||.+.... .+.+..... ....-..+.|++-+..+|+.++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-----~~~~~a~ksFFkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-----QHQPVANKSFFKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-----ccchhhhccccccceeEEEeccCCceEEEEEEE
Confidence 56789999999863 34443 3456789999887331 011111100 11222347788744445544432
Q ss_pred -----------CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee
Q 042883 400 -----------DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF 468 (597)
Q Consensus 400 -----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~ 468 (597)
...++++++......-.+ ...++|.++.|+|.+..+.++.|. .-..+.|||++ +.++..+
T Consensus 239 dVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGf------MPAkvtifnlr--~~~v~df 309 (566)
T KOG2315|consen 239 DVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGF------MPAKVTIFNLR--GKPVFDF 309 (566)
T ss_pred eecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEec------ccceEEEEcCC--CCEeEeC
Confidence 235777777643444333 347899999999944455555443 44569999999 6777776
Q ss_pred ccCCCceEEEEecCC-CeEEEeeCC---CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC------CCcEE
Q 042883 469 NGHKKAVSYVKFLSN-NELASASTD---SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE------TNEVF 538 (597)
Q Consensus 469 ~~~~~~v~~v~~~~~-~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------d~~i~ 538 (597)
. .++-+.+-|+|. ++|+.+|.+ |.|-|||+.+.+.+..+..-. -+-+.|+|||.++++++. |+.++
T Consensus 310 ~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 310 P--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred C--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 4 566788999999 777776654 789999999988888887543 356889999999998865 67899
Q ss_pred EEEccCCcccccccc
Q 042883 539 VYHKAISKPAASHRF 553 (597)
Q Consensus 539 iwd~~~~~~~~~~~~ 553 (597)
||+. +|..+....+
T Consensus 386 iwhy-tG~~l~~~~f 399 (566)
T KOG2315|consen 386 IWHY-TGSLLHEKMF 399 (566)
T ss_pred EEEe-cCceeehhhh
Confidence 9997 5666555544
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.2e-09 Score=101.39 Aligned_cols=237 Identities=10% Similarity=0.212 Sum_probs=141.4
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-----------CC
Q 042883 333 SSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-----------DG 401 (597)
Q Consensus 333 ~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-----------dg 401 (597)
+=+.|||-|.||+|-..-| |.+|--..- .....+.| ..|.-+.|+| ..++|++-+. ..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--------~r~~RF~H-p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESF--------DRIQRFYH-PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccH--------HHHHhccC-CCceeeecCC-ccceEEEecCCccccCcccCCCc
Confidence 4578999999999987665 789964332 22233333 3577799999 7889998652 24
Q ss_pred cEEEEeCCCCeeeeEEee--ccceeEE-EEeCCCCCceEEeecCCCcc--------------------------------
Q 042883 402 IVTIWDVTTSQSVMEYEE--HEKRAWS-VDFSCTEPSMLVSGSDDCKV-------------------------------- 446 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~--~~~~v~~-~~~~~~~~~~l~s~~~d~~~-------------------------------- 446 (597)
.++|||+.+|.....|.. ....++. +.||. ++.++|.-..++..
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 799999999976655543 1111221 34443 33333332222221
Q ss_pred -----------------------------------------------------------cCCCCeEEEEEccCCCcceee
Q 042883 447 -----------------------------------------------------------GSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 447 -----------------------------------------------------------~~~d~~i~i~d~~~~~~~~~~ 467 (597)
++.-.++.|+.++...-++..
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 111122333333332222222
Q ss_pred eccCCCceEEEEecCC-CeEEEee---CCCcEEEEEcCC----CcceeeeeCCCCceeEEEEeecCCEEEEE---eCCCc
Q 042883 468 FNGHKKAVSYVKFLSN-NELASAS---TDSSLRLWDVKE----NLPLHTFRGHTNEKNFVGLTVNNEYIACG---SETNE 536 (597)
Q Consensus 468 ~~~~~~~v~~v~~~~~-~~l~s~~---~d~~v~iwd~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~---~~d~~ 536 (597)
.. -...|...+|-|. +.+++-+ ...++.+|-+.+ .+.+..+. ....+.+.|+|.|++++++ |..|.
T Consensus 442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccc
Confidence 22 3346777889998 6655433 245688898873 23344443 2445789999999998876 45789
Q ss_pred EEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC------cccEEEEEe
Q 042883 537 VFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR------KGAIKVLVL 595 (597)
Q Consensus 537 i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~------dg~v~iwd~ 595 (597)
+.+||+.......+.... ....+.+-|+|.|+|+++++. |.--+||++
T Consensus 519 l~F~D~~~a~~k~~~~~e-----------h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPE-----------HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred eEEEecchhhhhhccCcc-----------ccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 999998742222111110 334678999999999999865 344567765
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=4.3e-08 Score=89.60 Aligned_cols=233 Identities=12% Similarity=0.127 Sum_probs=149.4
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC---CCcEEEEeCCC--Ceeee--EEeeccc
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY---DGIVTIWDVTT--SQSVM--EYEEHEK 422 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~--~~~~~~~ 422 (597)
+.-|++|++++..... .........+.++-++|+| +++.|+++.. +|.|..|.++. |.... .......
T Consensus 15 s~gI~v~~ld~~~g~l----~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 15 SQGIYVFNLDTKTGEL----SLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CCceEEEEEeCccccc----chhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 4679999998652222 2223334567788899999 6778887754 46777777654 44322 1222334
Q ss_pred eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee--eccCCCc----------eEEEEecCC-CeEEEe
Q 042883 423 RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV--FNGHKKA----------VSYVKFLSN-NELASA 489 (597)
Q Consensus 423 ~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~----------v~~v~~~~~-~~l~s~ 489 (597)
+.+.+++++ ++.+++++... .|.|.++-++..+.+... ...|.+. +-...+.|+ ++|++.
T Consensus 90 ~p~yvsvd~-~g~~vf~AnY~------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 90 PPCYVSVDE-DGRFVFVANYH------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred CCeEEEECC-CCCEEEEEEcc------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence 458899998 88888888753 356999998764433222 2234444 778889999 466665
Q ss_pred eC-CCcEEEEEcCCCcceeeee---CCCCceeEEEEeecCCEEEEEe-CCCcEEEEEccCC-ccccccc-cCCCCCCCcC
Q 042883 490 ST-DSSLRLWDVKENLPLHTFR---GHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAIS-KPAASHR-FGSDADHVDD 562 (597)
Q Consensus 490 ~~-d~~v~iwd~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~ 562 (597)
.. -..|.+|++..|+....-. ........|.|+|+|++.++.. -+++|.+|..... ..+..+. ....+..
T Consensus 163 DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d--- 239 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED--- 239 (346)
T ss_pred ecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc---
Confidence 42 3479999998765432211 2345668999999999877655 5899999998873 1111111 1111111
Q ss_pred cCCCcceEEEEEccCCCeEEEecC-cccEEEEEecC
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANR-KGAIKVLVLAA 597 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~-dg~v~iwd~~~ 597 (597)
.....+..+|..++||++|.++.. ...|-+|.+++
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 122667888999999999988753 34677777753
No 287
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=5.5e-08 Score=95.24 Aligned_cols=238 Identities=10% Similarity=0.103 Sum_probs=144.7
Q ss_pred EEEeeCC----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC----CCcEEEEeCCCC--e-
Q 042883 344 FASAGVS----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY----DGIVTIWDVTTS--Q- 412 (597)
Q Consensus 344 l~t~~~d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~- 412 (597)
+++|++. +.|.+|+++....... .............++++| ++++|++... +|.|..|++... .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~----~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLT----LVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEE----EEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCce----EeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCccee
Confidence 4556555 6889988854311111 111122345667789999 6777877765 578999988653 3
Q ss_pred -eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee---ec----------cCCCceEEE
Q 042883 413 -SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---FN----------GHKKAVSYV 478 (597)
Q Consensus 413 -~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~---~~----------~~~~~v~~v 478 (597)
.+............++++| ++.+++++.. .+|.|.+|++...+..... +. .......++
T Consensus 77 ~~~~~~~~~g~~p~~i~~~~-~g~~l~vany------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 77 TLLNSVPSGGSSPCHIAVDP-DGRFLYVANY------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp EEEEEEEESSSCEEEEEECT-TSSEEEEEET------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred EEeeeeccCCCCcEEEEEec-CCCEEEEEEc------cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 3333333445667899999 6777666654 2456999999874433222 11 122456789
Q ss_pred EecCC-CeEEEee-CCCcEEEEEcCCCc--ce--eeee-CCCCceeEEEEeecCCEEEEEe-CCCcEEEEEcc--CCccc
Q 042883 479 KFLSN-NELASAS-TDSSLRLWDVKENL--PL--HTFR-GHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKA--ISKPA 548 (597)
Q Consensus 479 ~~~~~-~~l~s~~-~d~~v~iwd~~~~~--~~--~~~~-~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~--~~~~~ 548 (597)
.++|+ +++++.. ....|.+|++.... .. ..+. ........++|+|+|+++++.. .++.|.+|++. .+...
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 99999 5555543 34579999997654 21 2222 3345678999999999876654 57889999988 34322
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEec
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
..-........ .........|+++|||++|+++. .++.|.+|+++
T Consensus 230 ~~~~~~~~~~~---~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 230 EIQTISTLPEG---FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEEEESCETT---SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEeeecccc---ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 21111111111 11133688999999999987754 57789999984
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.15 E-value=4.7e-10 Score=103.17 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=113.9
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEe---eCCCcEEEEeC
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASS---DYDGIVTIWDV 408 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~---~~dg~i~iwd~ 408 (597)
+..+.++++++++|.+..+....++++..... .............-+++.|... ...+..+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeecccCcceeeeeec-cceEEEEeecCCceeeeeecc
Confidence 44556778889999988888888888876522 1112222222334445555542 2333333 34455666665
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCCCeEE
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSNNELA 487 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~~~l~ 487 (597)
..+.... +-+|-+.+++++|+| |+.+++++..|.. |++-.... ...+.. ..||..-|..++.-++..|+
T Consensus 140 ~~~~~~~-~lGhvSml~dVavS~-D~~~IitaDRDEk-------IRvs~ypa-~f~IesfclGH~eFVS~isl~~~~~Ll 209 (390)
T KOG3914|consen 140 DSGRCEP-ILGHVSMLLDVAVSP-DDQFIITADRDEK-------IRVSRYPA-TFVIESFCLGHKEFVSTISLTDNYLLL 209 (390)
T ss_pred cccCcch-hhhhhhhhheeeecC-CCCEEEEecCCce-------EEEEecCc-ccchhhhccccHhheeeeeeccCceee
Confidence 5544443 348999999999999 8899999987665 88877665 233333 45799999999999888899
Q ss_pred EeeCCCcEEEEEcCCCcceeeee
Q 042883 488 SASTDSSLRLWDVKENLPLHTFR 510 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~~~~ 510 (597)
++|.|++|++||+++|+.+.++.
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ecCCCCcEEEEecccCCcccccc
Confidence 99999999999999999887664
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.1e-10 Score=110.91 Aligned_cols=222 Identities=14% Similarity=0.232 Sum_probs=153.8
Q ss_pred eccccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC
Q 042883 320 LRHGDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 320 ~~~~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
++-....||...|+.++--.+.+.+++++.|.+|++|.+..................|..+|..+.|.. +.++++++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc-- 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC-- 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--
Confidence 334455689999999887778888999999999999998765333333334445557889999999987 55666655
Q ss_pred CCcEEEEeCCCCeeeeEEee--ccceeEEEEeCCC-CCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-----ccC
Q 042883 400 DGIVTIWDVTTSQSVMEYEE--HEKRAWSVDFSCT-EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-----NGH 471 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~ 471 (597)
||.|.+||.--+..+..+.. ..+.+..+...|+ +..+++.+.. ...+|+++|.+. ......+ .+.
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs------aeSTVKl~DaRs-ce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS------AESTVKLFDARS-CEWTCELKVCNAPGP 875 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc------chhhheeeeccc-ccceeeEEeccCCCC
Confidence 79999999877776654321 1233344444443 4445544422 345699999987 3333332 345
Q ss_pred CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEE-EEccCCcccc
Q 042883 472 KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFV-YHKAISKPAA 549 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i-wd~~~~~~~~ 549 (597)
++.+.++++.+. ++++++-..|.|.+.|.++|+.+..+..-......++ .|..+.++....|..+.+ |....+....
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 567889999888 8899999999999999999999888775444443443 355667777778888888 8876665444
Q ss_pred ccc
Q 042883 550 SHR 552 (597)
Q Consensus 550 ~~~ 552 (597)
...
T Consensus 955 q~k 957 (1034)
T KOG4190|consen 955 QDK 957 (1034)
T ss_pred ccC
Confidence 443
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=7e-09 Score=102.01 Aligned_cols=253 Identities=12% Similarity=0.225 Sum_probs=170.2
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCc--------cCCCCceEecCCCceeEEEEecCCCCEEEEeeC
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPR--------DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~--------~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
......|++|+....+|+.|+.||.++|..+.+...... .........+|...|.-+.|+. ....|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 455688999999999999999999999998876522211 1222344568999999999997 5777888889
Q ss_pred CCcEEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcc-------------------------------
Q 042883 400 DGIVTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------- 446 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------- 446 (597)
+|.|.||-+-.|.....+. ...+-|.++.|+. +|..++..-.||.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH
Confidence 9999999988776554432 2456788999997 77766666666665
Q ss_pred ---cCCCCeEEEEEccCCC------cc-e---eeeccCCCceEEEEec--------CC-CeEEEeeCCCcEEEEEcCCC-
Q 042883 447 ---GSADHHIHYYDLRNIS------QP-L---HVFNGHKKAVSYVKFL--------SN-NELASASTDSSLRLWDVKEN- 503 (597)
Q Consensus 447 ---~~~d~~i~i~d~~~~~------~~-~---~~~~~~~~~v~~v~~~--------~~-~~l~s~~~d~~v~iwd~~~~- 503 (597)
+-.+|.+++||...+- .. + ..+......|..+.|. |+ ..|+++-..|.+.|-.-.+.
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 5556677777765311 01 0 0111122335566663 34 56888989999888654432
Q ss_pred cceeeeeCCCCceeEEEEeecCCEEEEEeCCC---------cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEE
Q 042883 504 LPLHTFRGHTNEKNFVGLTVNNEYIACGSETN---------EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCW 574 (597)
Q Consensus 504 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~ 574 (597)
.++..-. ...+..+.|+++|.+|+++|.+. .|.+|. .-|+.+.++..+ ...|++++|
T Consensus 251 ~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvp-----------g~~It~lsW 316 (1189)
T KOG2041|consen 251 EPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVP-----------GSCITGLSW 316 (1189)
T ss_pred CCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecC-----------CceeeeeEE
Confidence 3332222 25567889999999999987653 455554 345555555543 678999999
Q ss_pred ccCCCeEEEecCcccEEEEEecC
Q 042883 575 KSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 575 ~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
-..|-.++.+ .|+.|.+=+++|
T Consensus 317 Eg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 317 EGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred cCCceEEEEE-ecceEEEEeecc
Confidence 8777555543 466776666543
No 291
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.13 E-value=3.2e-11 Score=76.96 Aligned_cols=41 Identities=32% Similarity=0.762 Sum_probs=35.4
Q ss_pred ccccccccc---cccccccccccccHHHHHHhhcCCCCCCCCCC
Q 042883 40 LCPICKQLM---TDAFMTACGHSFCYTCIFTHLRNKSDCPCCGC 80 (597)
Q Consensus 40 ~C~IC~~~f---~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~ 80 (597)
.|+||++.| ..|++++|||+||..|+.+.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999 35789999999999999998855566999985
No 292
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.6e-09 Score=98.45 Aligned_cols=56 Identities=29% Similarity=0.643 Sum_probs=42.8
Q ss_pred Cccccccccc-ccccc---cc-cccccccHHHHHHhhcCC-CCCCCCCCCCccccccchHHH
Q 042883 38 DTLCPICKQL-MTDAF---MT-ACGHSFCYTCIFTHLRNK-SDCPCCGCHLTCKHIFPNLLL 93 (597)
Q Consensus 38 ~l~C~IC~~~-f~~P~---~l-~CgH~FC~~Cl~~~~~~~-~~CP~Cr~~~~~~~l~~n~~~ 93 (597)
+-.||||... |..|- ++ +|||.||..|+.++|... ..||.|+..+....+++-.+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~ 64 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFE 64 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccc
Confidence 4689999983 55663 33 699999999999988644 469999999988776544333
No 293
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.9e-11 Score=101.12 Aligned_cols=54 Identities=31% Similarity=0.882 Sum_probs=47.8
Q ss_pred CCCcccccccccccccccccccccccHHHHHHhhcCCCC---CCCCCCCCccccccc
Q 042883 36 DRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSD---CPCCGCHLTCKHIFP 89 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~---CP~Cr~~~~~~~l~~ 89 (597)
.-.+.|-||||.-+|||...|||.||=.||.+|+..... ||+|+..+....+.|
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 346889999999999999999999999999999986643 999999998777665
No 294
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.2e-11 Score=104.18 Aligned_cols=59 Identities=24% Similarity=0.685 Sum_probs=49.9
Q ss_pred cccCcCCCC-CcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccc
Q 042883 29 VDRDTEVDR-DTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHI 87 (597)
Q Consensus 29 ~~~~~~~~~-~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l 87 (597)
......+.+ .-.|.|||+.-.+|-.+||||.||-.||..|......||.||+.+.+..+
T Consensus 229 s~~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 229 SNSLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred ccCCccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 333333333 37799999999999999999999999999999999999999999987654
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=4.4e-10 Score=101.01 Aligned_cols=175 Identities=15% Similarity=0.256 Sum_probs=129.3
Q ss_pred EEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC--
Q 042883 384 LSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI-- 461 (597)
Q Consensus 384 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-- 461 (597)
++|+-+...+-++.+.+-.|-+-|+.+|.. +.|. ..+.|.++.|.. .++++..|..+| .|..+|++..
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRng-------eI~~iDLR~rnq 286 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNG-------EIFVIDLRCRNQ 286 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCC-------cEEEEEeeeccc
Confidence 366653222335555677888999887643 2332 577899999986 678888887554 4999999874
Q ss_pred --CcceeeeccCCCceEEEEecC-C-CeEEEeeCCCcEEEEEcCCCcc---eeeeeCCCCceeEE--EEeecCCEEEEEe
Q 042883 462 --SQPLHVFNGHKKAVSYVKFLS-N-NELASASTDSSLRLWDVKENLP---LHTFRGHTNEKNFV--GLTVNNEYIACGS 532 (597)
Q Consensus 462 --~~~~~~~~~~~~~v~~v~~~~-~-~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~v--~~s~~g~~l~~~~ 532 (597)
+.+...+. |.+.|+++.... + .+|++.+.+|+|++||.|.-+. +.++.||.+.-..+ .+.+....|+++|
T Consensus 287 G~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 287 GNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred CCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc
Confidence 44555554 889999998766 3 7899999999999999997665 89999997754433 3455667888899
Q ss_pred CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 533 ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 533 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
+|...+||.++.+..+.+++++.... ...+.+++|+.
T Consensus 366 dDcytRiWsl~~ghLl~tipf~~s~~-------e~d~~sv~~~s 402 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTIPFPYSAS-------EVDIPSVAFDS 402 (425)
T ss_pred CeeEEEEEecccCceeeccCCCCccc-------cccccceehhc
Confidence 99999999999999999988765321 33567777753
No 296
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=8.9e-09 Score=92.76 Aligned_cols=162 Identities=14% Similarity=0.285 Sum_probs=115.1
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE---
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT--- 404 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~--- 404 (597)
...+++++.+.+....|+.|-.+|++.-+.+....++. ..+.....|...+..+-|+. ....+++.+.|..+.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm---~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM---TFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHC 142 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc---chhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEe
Confidence 45788999999999999999999999988776542222 12223334566666666654 344444444433321
Q ss_pred ------------------------------------EEeC--CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc
Q 042883 405 ------------------------------------IWDV--TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV 446 (597)
Q Consensus 405 ------------------------------------iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~ 446 (597)
+..+ ..-..+.++.+|.+.+.+++|.| ...++.+|..|..
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~- 220 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHS- 220 (404)
T ss_pred eccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCc-
Confidence 1111 11234566778999999999998 8888888885544
Q ss_pred cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcC
Q 042883 447 GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVK 501 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~ 501 (597)
+.+||+-........+.+|.+.|..+...+- ..+++++.||.|.+||+.
T Consensus 221 ------vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 221 ------VIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ------eEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 9999998644455667789999999987777 889999999999999975
No 297
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.06 E-value=9.6e-11 Score=76.59 Aligned_cols=42 Identities=38% Similarity=0.967 Sum_probs=37.6
Q ss_pred cccccccccccccccc-ccccccHHHHHHhhcC-CCCCCCCCCC
Q 042883 40 LCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRN-KSDCPCCGCH 81 (597)
Q Consensus 40 ~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~-~~~CP~Cr~~ 81 (597)
.|+||++.+.+|+.++ |||.||..|+.+|+.. ...||.||..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 5999999998888776 9999999999999987 5669999875
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=5.4e-08 Score=91.48 Aligned_cols=220 Identities=13% Similarity=0.084 Sum_probs=149.8
Q ss_pred CCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEec----CCCceeEE-EEecCCCCEEEEeeCCCcEEEEeCCCCee
Q 042883 339 RDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP----TRSKLSCL-SWNKYTKNLIASSDYDGIVTIWDVTTSQS 413 (597)
Q Consensus 339 ~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~----~~~~i~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 413 (597)
.||+.|+-. ..|.|.+||..+...+..+...+..... ...+.--+ .|++.+|++++..+. |...|.+...+-.
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~ 353 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYS 353 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCee
Confidence 367766544 4678999998876322222221111000 01111111 145556889998885 7888888766554
Q ss_pred eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCe-EEEeeCC
Q 042883 414 VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LASASTD 492 (597)
Q Consensus 414 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~~d 492 (597)
++. ++.+.|.-..+.- ++.-++.|..||- .+-|||.++ ..+..+...-+.|.+|..++++. ++++...
T Consensus 354 iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD------~l~iyd~~~--~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 354 IQV--GKKGGVRYRRIQV-DPEGDVIGTNDGD------KLGIYDKDG--GEVKRIEKDLGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred EEc--CCCCceEEEEEcc-CCcceEEeccCCc------eEEEEecCC--ceEEEeeCCccceEEEEEcCCCcEEEEEcCc
Confidence 433 5666788777776 5667777776653 489999985 45666777778999999999955 7777777
Q ss_pred CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC----cEEEEEccCCccccccccCCCCCCCcCcCCCcc
Q 042883 493 SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN----EVFVYHKAISKPAASHRFGSDADHVDDDMGSYF 568 (597)
Q Consensus 493 ~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 568 (597)
..+-++|+.++++...-+...+-|+.+.|+|+++++|-+--+| .|++||+.+++....... .+.
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~------------ta~ 490 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP------------TAY 490 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC------------ccc
Confidence 7899999999887665556677899999999999999886665 699999998887654332 222
Q ss_pred eEEEEEccCCCeEEE
Q 042883 569 ISAVCWKSDSPTMLT 583 (597)
Q Consensus 569 i~~v~~~~~~~~l~s 583 (597)
=.+-+|+|++++|.-
T Consensus 491 DfsPaFD~d~ryLYf 505 (668)
T COG4946 491 DFSPAFDPDGRYLYF 505 (668)
T ss_pred ccCcccCCCCcEEEE
Confidence 345678899988654
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=2.9e-07 Score=85.79 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=143.9
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe
Q 042883 334 SIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ 412 (597)
Q Consensus 334 ~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 412 (597)
++.|.+ ++.++++....+.|..|+..+. .. ....... ..++++...+ ..++.+.. +.+.++|..+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~-------~~--~~~~~~~-~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG-------EV--EVIDLPG-PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT-------EE--EEEESSS-EEEEEEECTT-SEEEEEET-TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC-------eE--EEEecCC-CceEEEEccC-CEEEEEEc-CceEEEecCCCc
Confidence 578998 7777888778999999998876 11 1112222 6778888324 44555554 456666998886
Q ss_pred eeeEEee-----ccceeEEEEeCCCCCceEEeecCCCcccCC-CCeEEEEEccCCCcceeeeccCCCceEEEEecCC-Ce
Q 042883 413 SVMEYEE-----HEKRAWSVDFSCTEPSMLVSGSDDCKVGSA-DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 413 ~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 485 (597)
....+.. ....++++++.| ++++.++.......... .|.|+.++.. ++ +..+...-...+.++|+|+ ..
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSE
T ss_pred EEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchh
Confidence 5444433 346789999999 77777776544331101 1557777766 23 2222223456789999999 44
Q ss_pred E-EEeeCCCcEEEEEcCCCcc-------eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCC
Q 042883 486 L-ASASTDSSLRLWDVKENLP-------LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDA 557 (597)
Q Consensus 486 l-~s~~~d~~v~iwd~~~~~~-------~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 557 (597)
| ++-+..+.|..||+..... +..+....+..-.++++.+|+++++....+.|.++|.. |+.+..+..+
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--- 223 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--- 223 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---
Confidence 4 4667788899999864221 12222222346789999999988888788999999987 8888777764
Q ss_pred CCCcCcCCCcceEEEEEc-cCCCeEEEe
Q 042883 558 DHVDDDMGSYFISAVCWK-SDSPTMLTA 584 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~-~~~~~l~s~ 584 (597)
...+++++|. ++...|+..
T Consensus 224 --------~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 224 --------VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp --------SSSEEEEEEESTTSSEEEEE
T ss_pred --------CCCEEEEEEECCCCCEEEEE
Confidence 3479999994 665655543
No 300
>PHA02926 zinc finger-like protein; Provisional
Probab=99.04 E-value=1.1e-10 Score=98.42 Aligned_cols=54 Identities=28% Similarity=0.768 Sum_probs=42.7
Q ss_pred ccCcCCCCCcccccccccccc---------cccccccccccHHHHHHhhcCC------CCCCCCCCCCc
Q 042883 30 DRDTEVDRDTLCPICKQLMTD---------AFMTACGHSFCYTCIFTHLRNK------SDCPCCGCHLT 83 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~---------P~~l~CgH~FC~~Cl~~~~~~~------~~CP~Cr~~~~ 83 (597)
.......++.+|+||+|..-+ ++..+|+|+||..||.+|.... ..||.||..+.
T Consensus 162 e~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 162 EDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 344566778999999998754 2455799999999999999753 23999999886
No 301
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=3.8e-10 Score=107.45 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=122.7
Q ss_pred ecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC-------CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCccc
Q 042883 375 MPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT-------SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG 447 (597)
Q Consensus 375 ~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~ 447 (597)
.+|...|..++--. +.+.+++++.|.+|++|.++. ..+..++..|..+|.++.|.. +..+++++
T Consensus 732 ~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc------- 802 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC------- 802 (1034)
T ss_pred cCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec-------
Confidence 46677777776554 678899999999999999863 236677889999999999997 77777765
Q ss_pred CCCCeEEEEEccCCCcceeeec--cCCCceEEEEecCC---CeEEE-eeCCCcEEEEEcCCCcceeeee-----CCCCce
Q 042883 448 SADHHIHYYDLRNISQPLHVFN--GHKKAVSYVKFLSN---NELAS-ASTDSSLRLWDVKENLPLHTFR-----GHTNEK 516 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~---~~l~s-~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v 516 (597)
||.|++||.-- +.++..+. ...+.+..+.-.++ ..++. ++...+|+++|.+.+.....++ +....+
T Consensus 803 --D~giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 803 --DGGIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred --cCcceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 45599999876 55554322 12233333333343 33444 4788999999999987666654 334567
Q ss_pred eEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 517 NFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 517 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
.+++..+.|++++++-.+|.|.+.|.++|+.+..+.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 899999999999999999999999999999776554
No 302
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=4.5e-08 Score=108.41 Aligned_cols=209 Identities=8% Similarity=0.062 Sum_probs=132.7
Q ss_pred cEEEEEEcCCCCEEEEe-eCCCcEEEEecccCccCCccCC-CC---ce-----EecCCCceeEEEEecCCCCEEEEeeCC
Q 042883 331 IISSIEFDRDDELFASA-GVSRRIKIFEFSSVVNEPRDVH-YP---MV-----EMPTRSKLSCLSWNKYTKNLIASSDYD 400 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~-~~d~~v~iw~~~~~~~~~~~~~-~~---~~-----~~~~~~~i~~v~~~~~~~~~l~s~~~d 400 (597)
....++++++++.|+++ ..++.|+++|+.++........ .. .. ....-...++|+++|+++.++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 46789999988765554 4567899999765411000000 00 00 000012346899999667777887888
Q ss_pred CcEEEEeCCCCeeeeEEee---------------ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce
Q 042883 401 GIVTIWDVTTSQSVMEYEE---------------HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL 465 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~ 465 (597)
+.|++||..++... .+.+ .-...+.|+++|+++.++++.+. ++.|++||+.++...+
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------SSSIRALDLKTGGSRL 776 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------CCeEEEEECCCCcEEE
Confidence 99999998776432 2211 11245679999944445555553 4559999987632111
Q ss_pred ee------------eccC--------CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeee-------------C
Q 042883 466 HV------------FNGH--------KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR-------------G 511 (597)
Q Consensus 466 ~~------------~~~~--------~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~-------------~ 511 (597)
.. +... -.....++++++ ..+++.+.+++|++||..++....... +
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence 00 0000 113468889998 567777889999999998765443221 1
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 512 HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 512 ~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
.......++++++|+++++.+.++.|++||+.+++.
T Consensus 857 ~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 112467899999999988888999999999988765
No 303
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=9.1e-07 Score=81.14 Aligned_cols=252 Identities=11% Similarity=0.129 Sum_probs=160.5
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeC---CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-C
Q 042883 325 LFHAANIISSIEFDRDDELFASAGV---SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-D 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-d 400 (597)
+....+.++=++|+|++++|.++.. +|.|-.|.++............ .....+.+.|++++ ++.+++++.. .
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---~~~g~~p~yvsvd~-~g~~vf~AnY~~ 110 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---TLPGSPPCYVSVDE-DGRFVFVANYHS 110 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc---ccCCCCCeEEEECC-CCCEEEEEEccC
Confidence 3456677888999999999988765 4778888877531111111110 01123347899998 6777777754 5
Q ss_pred CcEEEEeCCC-Ceee--eEEeeccce----------eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee
Q 042883 401 GIVTIWDVTT-SQSV--MEYEEHEKR----------AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 401 g~i~iwd~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~ 467 (597)
|.|.++-++. |... .....|.+. +....+.| +++++++..-. --.|.+|++.. ++....
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG------~Dri~~y~~~d-g~L~~~ 182 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG------TDRIFLYDLDD-GKLTPA 182 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC------CceEEEEEccc-Cccccc
Confidence 7899998865 3321 112234444 88889999 88888776531 12389999985 432211
Q ss_pred ---eccCCCceEEEEecCCCeE--EEeeCCCcEEEEEcCCC-cceeeeeC---------CCCceeEEEEeecCCEEEEEe
Q 042883 468 ---FNGHKKAVSYVKFLSNNEL--ASASTDSSLRLWDVKEN-LPLHTFRG---------HTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 468 ---~~~~~~~v~~v~~~~~~~l--~s~~~d~~v~iwd~~~~-~~~~~~~~---------~~~~v~~v~~s~~g~~l~~~~ 532 (597)
.-.......-|.|+|++.+ ++.--+++|-+|..... ..+..++. .......|.+++||++|+++.
T Consensus 183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 1124456789999999553 34567899999998773 22222221 123456789999999998875
Q ss_pred C-CCcEEEEEccCCcc-ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC-cccEEEEEec
Q 042883 533 E-TNEVFVYHKAISKP-AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR-KGAIKVLVLA 596 (597)
Q Consensus 533 ~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~-dg~v~iwd~~ 596 (597)
. ...|.+|.+....- +.....- ..+........|+++|++|++++. +..|.||.++
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~--------~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGIT--------PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEe--------ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 4 34688887764322 2211111 113556788999999999988875 4468888875
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=4.4e-10 Score=112.80 Aligned_cols=213 Identities=19% Similarity=0.243 Sum_probs=145.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEE-eeCCC-cEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIAS-SDYDG-IVT 404 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s-~~~dg-~i~ 404 (597)
.|....+|++|+-+.+.|++|+-.|.|++|++.++ ........|.++|+-|.-+. ++..+++ +++.. -..
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-------~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-------SMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCc-------cccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 47788999999999999999999999999999988 33344557899999999887 4555554 44443 577
Q ss_pred EEeCCC-CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-ecc---CCCceEEEE
Q 042883 405 IWDVTT-SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNG---HKKAVSYVK 479 (597)
Q Consensus 405 iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~---~~~~v~~v~ 479 (597)
+|++.+ +....+|.+ -.++.|+......++.+. -....+||+.+ +.++.+ +.+ ....-+...
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~--------~d~a~~YDvqT-~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTE--------ADDALLYDVQT-CSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhccc--------ccceEEEeccc-CcHHHHhcCcchhhhhhccccc
Confidence 999854 344455533 456778752222222222 22379999998 444444 332 222336788
Q ss_pred ecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 480 FLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 480 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
|+|...|+- .|| .+||++..+.++.|......+ .-.|+|+|.-++.-+. |||+++-+.++..+.
T Consensus 1238 FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~------ 1301 (1516)
T KOG1832|consen 1238 FSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS------ 1301 (1516)
T ss_pred cCCCcceEe--eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcc------
Confidence 999955544 355 489999988888887555322 3469999998888764 999999888877652
Q ss_pred CcCcCCCcceEEEEEccCCCeEEE
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
-.-..|.|+..|..+++
T Consensus 1302 -------Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1302 -------LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred -------ccceEEEeccCccchhh
Confidence 23456777777765543
No 305
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.97 E-value=3.4e-10 Score=71.29 Aligned_cols=38 Identities=42% Similarity=1.171 Sum_probs=35.0
Q ss_pred cccccccccccccccccccccHHHHHHhhc-CCCCCCCC
Q 042883 41 CPICKQLMTDAFMTACGHSFCYTCIFTHLR-NKSDCPCC 78 (597)
Q Consensus 41 C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~-~~~~CP~C 78 (597)
|+||++...+|+.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998 55569987
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=2.7e-07 Score=81.94 Aligned_cols=203 Identities=12% Similarity=0.112 Sum_probs=116.9
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC-----CCEEEEeeCCCcEEEE
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT-----KNLIASSDYDGIVTIW 406 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~-----~~~l~s~~~dg~i~iw 406 (597)
=+-++||||+..||.+...|+|++||+.+...-...... .....-...|.++.|.+.. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc-ccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 346899999999999999999999999764111110000 0111124567777776532 2245555668888877
Q ss_pred eCCCC-----eeeeEEe---eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 407 DVTTS-----QSVMEYE---EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 407 d~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
-+..+ +....+. .+...|.++.++| ..++|+.||.... .++. + .+....+++-
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~---~~~~---s------------~a~~~GLtaW 185 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQN---QDGM---S------------KASSCGLTAW 185 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCC---CCcc---c------------cccccCceEE
Confidence 65321 2223332 2467899999999 6677776663221 0100 0 0111222222
Q ss_pred EecCC---CeEEEeeCCCc------EEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 479 KFLSN---NELASASTDSS------LRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 479 ~~~~~---~~l~s~~~d~~------v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
..-.+ -+.++...|+. -.+|.+-+.+...........|..|+.||||..||+...+|.|.+|++.+-+...
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 22111 11222222221 1233333222222222346678999999999999999999999999998877776
Q ss_pred ccccC
Q 042883 550 SHRFG 554 (597)
Q Consensus 550 ~~~~~ 554 (597)
.....
T Consensus 266 ~W~~~ 270 (282)
T PF15492_consen 266 SWKQD 270 (282)
T ss_pred ccchh
Confidence 66543
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.97 E-value=1.3e-08 Score=88.22 Aligned_cols=149 Identities=16% Similarity=0.226 Sum_probs=96.0
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-----CCcEEEEeCCCCeee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-----DGIVTIWDVTTSQSV 414 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~ 414 (597)
-++.++++..||.+.+++.+.. .... ...+.. |.+ -.+.++.. .++++.++.. -+..++|+++..+..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~-~~~~-~~i~~~---~~~-~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD-LALM-SRIPSI---HSG-SASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred cCCceEecCCCceEEEEechHH-Hhhh-hhcccc---ccc-ccccceee-cccEEecCCcceEeeccceeeecccccccc
Confidence 4567899999999999987653 1100 001111 111 11112222 2344444321 234556665433222
Q ss_pred eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEEEeeCC
Q 042883 415 MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELASASTD 492 (597)
Q Consensus 415 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d 492 (597)
..-......|.+++-+|....++++|+.||. +.+||.++...+...++.|...++.+-|+|. ..|++++.|
T Consensus 173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~-------~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 173 IPSKKALDAVTALCSHPAQQHLVCCGTDDGI-------VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cccccccccchhhhCCcccccEEEEecCCCe-------EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 1111122349999999977777777775554 9999999877788889999999999999998 679999999
Q ss_pred CcEEEEEcCC
Q 042883 493 SSLRLWDVKE 502 (597)
Q Consensus 493 ~~v~iwd~~~ 502 (597)
|.+--||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999764
No 308
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=2.3e-07 Score=100.83 Aligned_cols=257 Identities=12% Similarity=0.149 Sum_probs=155.2
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccC-----------------------ccCCc-------c----CCCCce-
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSV-----------------------VNEPR-------D----VHYPMV- 373 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~-----------------------~~~~~-------~----~~~~~~- 373 (597)
...|.+++||||+..|+.++.+++|.+...+-. +++.. . ...+..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 468999999999999999999998877643211 00000 0 000000
Q ss_pred -----EecCCCceeEEEEecCCCCEEEEeeC---C---CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecC
Q 042883 374 -----EMPTRSKLSCLSWNKYTKNLIASSDY---D---GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD 442 (597)
Q Consensus 374 -----~~~~~~~i~~v~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 442 (597)
.......-..|+|-. ||.++|+.+. . ..++||+- .|....+-..-.+--..++|-| .|+++++...
T Consensus 200 ~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~ 276 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRP-SGNLIASSQR 276 (928)
T ss_pred ccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCC-CCCEEEEEEE
Confidence 001233556789998 7889888764 2 47999984 4666555544444456789999 8888888764
Q ss_pred CCcccCCCCeEEEEEccCCCcceeeec----cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCccee--eee-CCCC
Q 042883 443 DCKVGSADHHIHYYDLRNISQPLHVFN----GHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLH--TFR-GHTN 514 (597)
Q Consensus 443 d~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~--~~~-~~~~ 514 (597)
-. ....|.+|.-+ |..-..|. .....|..+.|+++ ..|+..- ...|.+|-..+..-.. .+. ....
T Consensus 277 ~~----~~~~VvFfErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~vqLWt~~NYHWYLKqei~~~~~~ 349 (928)
T PF04762_consen 277 LP----DRHDVVFFERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDRVQLWTRSNYHWYLKQEIRFSSSE 349 (928)
T ss_pred cC----CCcEEEEEecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCCceEEEeeCCEEEEEEEEEccCCC
Confidence 21 12346666644 33322222 34568999999999 5555544 4459999988754322 222 1123
Q ss_pred ceeEEEEeec-CCEEEEEeCCCcEEEEEcc----CC----------------ccccccccC-----CCCCCCcCcCCCcc
Q 042883 515 EKNFVGLTVN-NEYIACGSETNEVFVYHKA----IS----------------KPAASHRFG-----SDADHVDDDMGSYF 568 (597)
Q Consensus 515 ~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~----~~----------------~~~~~~~~~-----~~~~~~~~~~h~~~ 568 (597)
.+..+.|+|. ...|...+.+|.+..+++. .+ ..+...++. +...... -.-..+
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~-l~~~~~ 428 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE-LELPSP 428 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE-EcCCCC
Confidence 3445889985 3456666665666554421 11 111111111 1000111 112678
Q ss_pred eEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 569 ISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 569 i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|.+++|++++..+++-..||.|.+|...
T Consensus 429 v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 429 VNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred cEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 9999999999889999999999999853
No 309
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=6.9e-07 Score=89.14 Aligned_cols=182 Identities=10% Similarity=0.068 Sum_probs=110.4
Q ss_pred ceeEEEEecCCCCEEEEeeC---CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 380 KLSCLSWNKYTKNLIASSDY---DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
....-.|+|++...++..+. +..|+++|+.+++..... ...+......|+|++..++++.+.++ +..|+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g-----~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKG-----QPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCC-----CcEEEEE
Confidence 66788999943333554333 356999999887654443 34455667789994445555555432 4678999
Q ss_pred EccCCCcceeeeccCCCceEEEEecCC-CeEEEee-CCC--cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe
Q 042883 457 DLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDS--SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 457 d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~--~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
|+.. +. ...+..+........|+|| ..|+-.+ ..+ .|.++|+.+++....... .. ....|+|||++|+..+
T Consensus 263 dl~~-g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 263 DTNT-KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSS 337 (419)
T ss_pred ECCC-Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEE
Confidence 9875 33 3444433333345679999 4444433 333 588888887665332221 11 2348999999887665
Q ss_pred CC---------CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec
Q 042883 533 ET---------NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 533 ~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
.. ..|.+.|+.++....... . .......|+|||+.|+-.+
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~------------~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTA-N------------GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCC-C------------CCcCCeEECCCCCEEEEEE
Confidence 43 368888887776433221 1 1122478999999776543
No 310
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.94 E-value=2e-07 Score=101.26 Aligned_cols=244 Identities=14% Similarity=0.183 Sum_probs=156.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEE----ecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIF----EFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw----~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
...+.|.++.|-++...++.+..+|.|.++ +.... .......-..+|.+++|+| ++.+|+....+|+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--------~~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~ 143 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--------EIEIVGSVDSGILAASWSP-DEELLALVTGEGN 143 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--------eeEEEEEEcCcEEEEEECC-CcCEEEEEeCCCE
Confidence 456789999999999989999999999999 43332 2222333467999999999 7888888888888
Q ss_pred EEEEeCC---------------C--------CeeeeEEee------------------------ccceeEEEEeCCCCCc
Q 042883 403 VTIWDVT---------------T--------SQSVMEYEE------------------------HEKRAWSVDFSCTEPS 435 (597)
Q Consensus 403 i~iwd~~---------------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~ 435 (597)
+.+-+-. . |+.-..|.| ..+.-..|+|-. ||.
T Consensus 144 l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~ 222 (928)
T PF04762_consen 144 LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGE 222 (928)
T ss_pred EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCc
Confidence 8775421 0 011111111 122345678887 888
Q ss_pred eEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeC---CCcEEEEEcCCCcceeeee-
Q 042883 436 MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAST---DSSLRLWDVKENLPLHTFR- 510 (597)
Q Consensus 436 ~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~---d~~v~iwd~~~~~~~~~~~- 510 (597)
+||+.+-+...+ .-..|+||+-. +....+-..-.+--.+++|.|. +.|++... ...|.+|. ++|-.-..|.
T Consensus 223 yFAVss~~~~~~-~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l 298 (928)
T PF04762_consen 223 YFAVSSVEPETG-SRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTL 298 (928)
T ss_pred EEEEEEEEcCCC-ceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEec
Confidence 888877532210 13579999866 4433333333334457899999 44554432 34577777 4443333332
Q ss_pred ---CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc--ccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEe
Q 042883 511 ---GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP--AASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTA 584 (597)
Q Consensus 511 ---~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~ 584 (597)
.....|..+.|++|+.+||+.-.|. |.+|-..+..- ...+.+.. ...+..+.|+|... .|...
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~----------~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS----------SESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC----------CCCCCceEECCCCCCEEEEE
Confidence 3455789999999999999876555 99999877542 22333321 33455599999654 46666
Q ss_pred cCcccEEEEEe
Q 042883 585 NRKGAIKVLVL 595 (597)
Q Consensus 585 ~~dg~v~iwd~ 595 (597)
+.+|.+..+++
T Consensus 368 t~~g~~~~~~~ 378 (928)
T PF04762_consen 368 TSNGQYEIYDF 378 (928)
T ss_pred ecCCcEEEEEE
Confidence 66677766654
No 311
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=4.7e-07 Score=85.35 Aligned_cols=142 Identities=7% Similarity=-0.027 Sum_probs=108.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCC-cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSR-RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
+|.+.|.=..+..+++-++.|..|| .+-|||..++ ........-+.|.+++.++ ++..++.+.....+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~v 427 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------EVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWV 427 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------eEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEE
Confidence 6778888888888888899999999 8999999887 2233334567899999999 7899999988889999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
+|+.++.....-+...+-|+.++|+| ++.++|-+-.+|. .-..|++||+.. ++...... ..+.=.+=+|.|+
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy---~tq~Iklydm~~-~Kiy~vTT-~ta~DfsPaFD~d 499 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGY---YTQSIKLYDMDG-GKIYDVTT-PTAYDFSPAFDPD 499 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcce---eeeeEEEEecCC-CeEEEecC-CcccccCcccCCC
Confidence 99999877655555667899999999 8889988876665 356799999986 44433322 2222344566677
No 312
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.5e-10 Score=107.04 Aligned_cols=56 Identities=34% Similarity=0.777 Sum_probs=49.3
Q ss_pred CcccccccccccccccccccccccHHHHHHhhcCC-----CCCCCCCCCCccccccchHHH
Q 042883 38 DTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNK-----SDCPCCGCHLTCKHIFPNLLL 93 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~-----~~CP~Cr~~~~~~~l~~n~~~ 93 (597)
+..|||||+...-|+...|||.||-.||..||... ..||.||..+.+++|.+-++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 78999999999999999999999999999999854 349999999999988775443
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.8e-08 Score=90.72 Aligned_cols=259 Identities=13% Similarity=0.073 Sum_probs=170.1
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-CCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-DGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-dg~i 403 (597)
.+-|.+.|+.+.-. -.+++.+++.||.++.|.-... ....-......|-..|.+++.+- ++.++.+++. |..+
T Consensus 5 symhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i----sGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI----SGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSV 78 (558)
T ss_pred hhcccceeeeEeee-hhheEEeeecchhhhhcCCCCc----cceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccce
Confidence 45688888887555 4679999999999999975431 11122223334666778888876 7888888777 9999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEe--CCCCCc-eEEeecCCCcccCCCCeEEEEEccCCCcceeeec-cCCCceEEEE
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDF--SCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKKAVSYVK 479 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~v~ 479 (597)
+++|+.+-..+.-++- ....-.+.| ++.+.. .++.+.. .++.|.++|-+....+...+. -|..+|..+.
T Consensus 79 KvfDvEn~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~------~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLF------KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred eEEEeeccchhhhccc-ccCCCceEEecCCCCeeeeEEeecc------cCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 9999876544322221 111112223 331222 3333322 356699999887554555544 4899999999
Q ss_pred ecCC-CeEEEeeCCCcEEEEEcCC------Ccce---------eeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 480 FLSN-NELASASTDSSLRLWDVKE------NLPL---------HTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~~v~iwd~~~------~~~~---------~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
+++. ..+++....|.|.-|.... .+.. ..+........++.|+|+|..+.+-+.|..|++++..
T Consensus 152 y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 152 YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 9998 6678888899999998763 1111 1122234566789999999999999999999999999
Q ss_pred CCccccccccCCCC-----CCC-----------------cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 544 ISKPAASHRFGSDA-----DHV-----------------DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 544 ~~~~~~~~~~~~~~-----~~~-----------------~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+|+.+..+.-.... ... -..+....-+.+.|+..|++|+-|+-=| |+|.++.+
T Consensus 232 tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 99877655332100 000 0011244556788999999998887665 67777653
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.87 E-value=5.3e-08 Score=98.76 Aligned_cols=187 Identities=13% Similarity=0.230 Sum_probs=137.6
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE 419 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 419 (597)
++..++.|+--..+..+|+.+. .......-..+.|+-+.. +++.+.+|...|+|.+-|.++.+.+.++..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~-------~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a 215 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE-------KETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDA 215 (1118)
T ss_pred CCcceeecchhhheeeeecccc-------eeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeec
Confidence 4456777776677778888776 111111112223444443 478999999999999999999999999999
Q ss_pred ccceeEEEEeCCCCCceEEeecCCCcc--cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEEEeeCCCcE
Q 042883 420 HEKRAWSVDFSCTEPSMLVSGSDDCKV--GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELASASTDSSL 495 (597)
Q Consensus 420 ~~~~v~~~~~~~~~~~~l~s~~~d~~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v 495 (597)
|.+.|.++.. .|+.|+++|..... -..|..|+|||+|+ .+.+.-+.-+.++ .-+.|+|. ..+++++..|..
T Consensus 216 Hs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 216 HSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred cccceeeeec---cCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 9999999887 46888888876553 24577899999997 4444444433333 56778888 789999999999
Q ss_pred EEEEcC---CC-cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 496 RLWDVK---EN-LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 496 ~iwd~~---~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
.+.|.. +. ..+..+....+.+..+.++++|..++.|..+|.|.+|-
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 999943 32 22344444556689999999999999999999999997
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=8.7e-09 Score=92.87 Aligned_cols=157 Identities=17% Similarity=0.275 Sum_probs=116.2
Q ss_pred EEEcCC--CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC-
Q 042883 335 IEFDRD--DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS- 411 (597)
Q Consensus 335 i~~~~~--~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~- 411 (597)
++|+-+ |-. ++.+.+..|.+-++.++ +. ..+...+.|.++.|.. .+++++.|..+|.|..+|++.+
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg-------~~--qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETG-------HQ--QSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecc-------cc--cccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecc
Confidence 356542 334 44555778999999987 22 2233567888999986 6899999999999999999865
Q ss_pred ----eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc---eeeeccCCCceEEE--EecC
Q 042883 412 ----QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP---LHVFNGHKKAVSYV--KFLS 482 (597)
Q Consensus 412 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~v--~~~~ 482 (597)
.+...+ -|.+.|+++.....+..+|.+.+- +|+|.+||++. .+. +..+.||-..-..+ .+.+
T Consensus 286 qG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M-------~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~ 356 (425)
T KOG2695|consen 286 QGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDM-------TGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKE 356 (425)
T ss_pred cCCCcceEEE-EcCcchhhhhhhccccceEeeccC-------cCceeEeeehh-hhcccceeeeeccccccccccccccc
Confidence 233333 588999999887656677777664 45599999996 444 78888886433333 3345
Q ss_pred C-CeEEEeeCCCcEEEEEcCCCcceeeeeC
Q 042883 483 N-NELASASTDSSLRLWDVKENLPLHTFRG 511 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 511 (597)
. +.+++++.|...+||.++.+..+.+++.
T Consensus 357 eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceEEEccCeeEEEEEecccCceeeccCC
Confidence 5 8899999999999999999998888764
No 316
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.86 E-value=7.5e-07 Score=77.88 Aligned_cols=190 Identities=8% Similarity=0.049 Sum_probs=117.5
Q ss_pred CCEEEEeeCCCcEEEEeCCCCee-eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 391 KNLIASSDYDGIVTIWDVTTSQS-VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 391 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
..+|+.|+..|...+|...+.+. .+....+...|+-+.=.-+...-+..++. |.++++.++.. +.....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn-------dht~k~~~~~~-~s~~~~-- 153 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN-------DHTGKTMVVSG-DSNKFA-- 153 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC-------CcceeEEEEec-Ccccce--
Confidence 45889999999999999886543 33333333332221111111122334444 44477777764 211111
Q ss_pred cCCC--ceEEEEecCC-CeEEEeeCCCcEEEEEcCC-Cc-ceeee-eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 470 GHKK--AVSYVKFLSN-NELASASTDSSLRLWDVKE-NL-PLHTF-RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 470 ~~~~--~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~-~~-~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
.|.. .+.+++++++ .++++.+....|..|.+.. +. .+... ......-.+.+|+.....+|++..||.+.|||++
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 1222 3788999999 6677888888899998865 22 22212 2223333578899999999999999999999998
Q ss_pred CCccccccccCCCCCCCcCcCCCcceEEEEEccCCC--eEEEecCcccEEEEEec
Q 042883 544 ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP--TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~--~l~s~~~dg~v~iwd~~ 596 (597)
.......... ....+|.+.+..+.|++-|. +|+..-.=+.++|-|++
T Consensus 234 ~~~tpm~~~s------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 234 NMATPMAEIS------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred ccccchhhhc------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 6543322221 22345799999999998664 34444344567777764
No 317
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=2.7e-08 Score=91.78 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=110.8
Q ss_pred eEEEEecCCCCEEEEeeCCCcEEEEeCCCCee----eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 382 SCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS----VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 382 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
..+..++ ++.++|++..+....+++...... .... ......+++.|...+...+++-. - +..+.+.+|.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dk-a----gD~~~~di~s 138 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADK-A----GDVYSFDILS 138 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEee-c----CCceeeeeec
Confidence 3344555 788888888777777777654432 1111 12233344444442333333222 1 1234466666
Q ss_pred ccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeee-eCCCCceeEEEEeecCCEEEEEeCCC
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTF-RGHTNEKNFVGLTVNNEYIACGSETN 535 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~ 535 (597)
... .....+-||-+-++.|+|+|| ..|+++..|..|+|-.....-.+..| -||...|..++.-++ ..|++||.|+
T Consensus 139 ~~~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~ 215 (390)
T KOG3914|consen 139 ADS--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK 215 (390)
T ss_pred ccc--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence 553 344455689999999999999 88999999999999877765556555 479999999998655 4589999999
Q ss_pred cEEEEEccCCccccccccCC
Q 042883 536 EVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 536 ~i~iwd~~~~~~~~~~~~~~ 555 (597)
+|++||+.+|+.+.++.+..
T Consensus 216 tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred cEEEEecccCCcccccchhH
Confidence 99999999999887766543
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=6.4e-06 Score=75.79 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=145.9
Q ss_pred EEEEEEcC-CCCEEEEeeCCCc-EEEEecccCccCCc-cCCCCceEecCCCceeEEEEecCCCCEEEEeeC-----CCcE
Q 042883 332 ISSIEFDR-DDELFASAGVSRR-IKIFEFSSVVNEPR-DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-----DGIV 403 (597)
Q Consensus 332 v~~i~~~~-~~~~l~t~~~d~~-v~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-----dg~i 403 (597)
...++.+| .+..++.+..-|+ ..+||..++..... ........++| -.|++ ++.+|++.-. .|.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcC-CCCEEEEeccccCCCcEEE
Confidence 44677888 4556666766655 66888887721111 11122233344 67898 7888888633 4789
Q ss_pred EEEeCC-CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-----------cCCCCeEEEEEccCCCcceee--e-
Q 042883 404 TIWDVT-TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-----------GSADHHIHYYDLRNISQPLHV--F- 468 (597)
Q Consensus 404 ~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-----------~~~d~~i~i~d~~~~~~~~~~--~- 468 (597)
-|||.. +...+..+..+.-....+.+.| ++..|+.+...-.. .+.+-++.+.|..+ +..+.. +
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp 157 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELP 157 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecC
Confidence 999998 6678888888888888999999 66444444311111 33344555666665 555544 3
Q ss_pred -ccCCCceEEEEecCCCeEEEeeCC-C-------cEEEEEcCCCcceeeee-------CCCCceeEEEEeecCCEEEEEe
Q 042883 469 -NGHKKAVSYVKFLSNNELASASTD-S-------SLRLWDVKENLPLHTFR-------GHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 469 -~~~~~~v~~v~~~~~~~l~s~~~d-~-------~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
.-|.-.|.-+++.+++.++.+... | -|-+++ .+..+..+. .-.+-+-+|+++++|.++++.+
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 226667888999888776665432 1 133333 233333332 2245678999999998876555
Q ss_pred -CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 533 -ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 533 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
..|.+.+||..+++.+...... .+..++-.+++ ++++.+.
T Consensus 236 PrGg~~~~~d~~tg~~~~~~~l~-------------D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLLGSVPLP-------------DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CCCCEEEEEECCCCCEeeccccC-------------ceeeeeecCCc-eEEeCCC
Confidence 5788999999999998877643 46677777666 5555443
No 319
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=7.6e-07 Score=88.84 Aligned_cols=195 Identities=10% Similarity=0.052 Sum_probs=113.7
Q ss_pred CcEEEEEEcCCCCE-EEEeeCC---CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC--CcE
Q 042883 330 NIISSIEFDRDDEL-FASAGVS---RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD--GIV 403 (597)
Q Consensus 330 ~~v~~i~~~~~~~~-l~t~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d--g~i 403 (597)
+.+..-.|+|||+. ++..+.+ ..|.++|+.++ .........+......|+|++..++++.+.+ ..|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg--------~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG--------KKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC--------cEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 36778999999984 6544433 45888888776 2222223345566778999444455555444 468
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
.++|+.++... .+..+........|+|++..++++....+ ...|+++|+.+ +....... ... ....|+|+
T Consensus 260 y~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g-----~~~Iy~~dl~~-g~~~rlt~-~g~--~~~~~SPD 329 (419)
T PRK04043 260 YLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLG-----YPNIFMKKLNS-GSVEQVVF-HGK--NNSSVSTY 329 (419)
T ss_pred EEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCC-----CceEEEEECCC-CCeEeCcc-CCC--cCceECCC
Confidence 88888777543 34333333445689994434444443322 23588888875 33322221 111 12489999
Q ss_pred -CeEEEeeCC---------CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC-C--cEEEEEccC
Q 042883 484 -NELASASTD---------SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET-N--EVFVYHKAI 544 (597)
Q Consensus 484 -~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-~--~i~iwd~~~ 544 (597)
..|+..+.. ..|.+.|+.++.. ..+... .......|+|||+.|+..+.+ + .+.++++..
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 555544432 3688888877753 444332 223458899999987765543 2 356666644
No 320
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=3.7e-07 Score=91.13 Aligned_cols=237 Identities=10% Similarity=0.086 Sum_probs=159.2
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC-----------CCCEEEEeeC
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY-----------TKNLIASSDY 399 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-----------~~~~l~s~~~ 399 (597)
.-.++.|+|.| +||.|+ ...|.+.|..+. ........|...|+.|.|.|. ..-+|+++..
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~-------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSL-------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhh-------hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 36688899977 677776 456888887654 222233346789999999872 1236778888
Q ss_pred CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCC--CC-ceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceE
Q 042883 400 DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCT--EP-SMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVS 476 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 476 (597)
.|.|.+||...+..+..+..|.+++.++.|-|. +. .++++-.. ..+|.+|+..++. ..-.+........
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-------ss~lvLwntdtG~-k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG-------SSTLVLWNTDTGE-KFWKYDYSHEILS 159 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC-------CcEEEEEEccCCc-eeeccccCCccee
Confidence 899999999999888889899999999999763 22 34444332 3459999998844 3333333334566
Q ss_pred EEEecCC--CeEEEeeCCCcEEEEEcCC-------CcceeeeeCCCC----------------c------e---eEEEEe
Q 042883 477 YVKFLSN--NELASASTDSSLRLWDVKE-------NLPLHTFRGHTN----------------E------K---NFVGLT 522 (597)
Q Consensus 477 ~v~~~~~--~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~----------------~------v---~~v~~s 522 (597)
++.+.|- ..+..-+..|.|.+-+.-. ++..+.-..|.. . + ..++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 7888886 5566666667777666432 222222122211 0 0 125678
Q ss_pred ecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC--CeEEEecCcccEEEEEe
Q 042883 523 VNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS--PTMLTANRKGAIKVLVL 595 (597)
Q Consensus 523 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~--~~l~s~~~dg~v~iwd~ 595 (597)
|.-+.++-......+.|+|+.-...+...... .+.+.-+.|-|++ ..|+.+..||.+.||--
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vvpie-----------r~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVVPIE-----------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEEEec-----------cCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 87665555667788999999988888877764 4445567777765 45999999999999953
No 321
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.81 E-value=2.9e-09 Score=76.30 Aligned_cols=40 Identities=35% Similarity=0.952 Sum_probs=33.8
Q ss_pred cccccccccccc-------------ccccccccccHHHHHHhhcCCCCCCCCC
Q 042883 40 LCPICKQLMTDA-------------FMTACGHSFCYTCIFTHLRNKSDCPCCG 79 (597)
Q Consensus 40 ~C~IC~~~f~~P-------------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr 79 (597)
.|+||++.|.+| +..+|||.|...||++|+.....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 399999999544 3346999999999999999888999998
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=5.9e-09 Score=104.93 Aligned_cols=188 Identities=15% Similarity=0.221 Sum_probs=136.0
Q ss_pred cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeec-CCCcccCCCCeEE
Q 042883 376 PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGS-DDCKVGSADHHIH 454 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~~~~~d~~i~ 454 (597)
.+....+|++|+- +.++|+.|+..|.|++|++.+|........|.+.|+.+.-+- ++...++.+ ...- -..
T Consensus 1099 d~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~P------lsa 1170 (1516)
T KOG1832|consen 1099 DETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSP------LSA 1170 (1516)
T ss_pred ccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCc------hHH
Confidence 4567899999998 789999999999999999999999999999999999999987 555555544 2221 267
Q ss_pred EEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeC----CCCceeEEEEeecCCEEE
Q 042883 455 YYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRG----HTNEKNFVGLTVNNEYIA 529 (597)
Q Consensus 455 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~v~~s~~g~~l~ 529 (597)
+|++...+.+.+.|.. -.++.|+.. ..-+.|.....+.|||+.++.++.++.. ....-+...|+|+..+|+
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9999876666666653 357788776 3344555556789999999988887432 112236788999998887
Q ss_pred EEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 530 CGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.|| .+||++....++.+..-. .-..-.|+|+|..++.-+ -|||++|
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft------------~~~~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFT------------DYGGGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhhe------------ecccccccCCCceEEeec-----hhhhhHH
Confidence 455 479998876666554211 111224899998887755 3677653
No 323
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.6e-09 Score=109.06 Aligned_cols=57 Identities=28% Similarity=0.719 Sum_probs=50.4
Q ss_pred cCCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCccccccc
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFP 89 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~~~l~~ 89 (597)
..+.+-|+||.|..-|+|.|+..|||.||..|+.+.++... .||.|+..|...|+.+
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 35666799999999999999999999999999998888664 5999999999888765
No 324
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=1.9e-07 Score=83.13 Aligned_cols=208 Identities=15% Similarity=0.248 Sum_probs=131.9
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe-----eeeEEeecc------------ceeEEEEeCCCCC-ceEEe
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-----SVMEYEEHE------------KRAWSVDFSCTEP-SMLVS 439 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~-~~l~s 439 (597)
...|++|.|.. .|.++++|...|.|.+|.-.... ....|.+|. ..|..+.|....+ ..++.
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46799999997 78999999999999999743321 222334432 4578888864332 33444
Q ss_pred ecCCCcccCCCCeEEEEEccCC------------------Ccc-----------------------eeee-ccCCCceEE
Q 042883 440 GSDDCKVGSADHHIHYYDLRNI------------------SQP-----------------------LHVF-NGHKKAVSY 477 (597)
Q Consensus 440 ~~~d~~~~~~d~~i~i~d~~~~------------------~~~-----------------------~~~~-~~~~~~v~~ 477 (597)
.+. |.+|++|.+... +.+ .+.+ ..|...|.+
T Consensus 105 stN-------dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 105 STN-------DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred ecC-------CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 443 555999988642 100 1111 356777889
Q ss_pred EEecCCCeEEEeeCCCcEEEEEcCCCccee---eeeCCC-----CceeEEEEeec-CCEEEEEeCCCcEEEEEccCCc--
Q 042883 478 VKFLSNNELASASTDSSLRLWDVKENLPLH---TFRGHT-----NEKNFVGLTVN-NEYIACGSETNEVFVYHKAISK-- 546 (597)
Q Consensus 478 v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~-----~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~-- 546 (597)
+.++.+...+..+.|=.|.+|++.-...-. .++.|. ..|++..|+|. ...+...+..|.|++-|++...
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999988555555667789999987533222 223332 35788889997 4566667788999999988321
Q ss_pred ----cccccccCC-CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 547 ----PAASHRFGS-DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 547 ----~~~~~~~~~-~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+....... ...... .-...|..+.|+++|+|+++-+.- +|+|||+.
T Consensus 258 dn~~klfe~~~D~v~~~ff~--eivsSISD~kFs~ngryIlsRdyl-tvkiwDvn 309 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFE--EIVSSISDFKFSDNGRYILSRDYL-TVKIWDVN 309 (460)
T ss_pred cCchhhhhhccCcccchhHH--HHhhhhcceEEcCCCcEEEEeccc-eEEEEecc
Confidence 111111111 000000 014578899999999999987654 79999974
No 325
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.74 E-value=2.3e-06 Score=85.48 Aligned_cols=219 Identities=12% Similarity=0.063 Sum_probs=127.5
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE 419 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 419 (597)
++..+++++.+|.|..+|..++.... .......+.+.-.. .+..++.++.+|.|+.||..+|+.+..+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W--------~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELW--------RAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEee--------eeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 45677778888999999987762111 11111111111111 234677777899999999999988777643
Q ss_pred ccceeE-----EEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-CC---C---ceEEEEec---CCC
Q 042883 420 HEKRAW-----SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-HK---K---AVSYVKFL---SNN 484 (597)
Q Consensus 420 ~~~~v~-----~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~---~---~v~~v~~~---~~~ 484 (597)
....+. ...+. ++ .++.+.. ++.+..+|+++ ++.+-.... .. . .+..+.-+ .++
T Consensus 174 ~~~~~~~~~~~sp~~~--~~-~v~~~~~-------~g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 174 VTPALTLRGSASPVIA--DG-GVLVGFA-------GGKLVALDLQT-GQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred CCCceeecCCCCCEEE--CC-EEEEECC-------CCEEEEEEccC-CCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 322111 11111 22 3444443 45588889877 443322210 00 0 00011111 246
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc-cCCCCCCCcCc
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR-FGSDADHVDDD 563 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 563 (597)
.+++++.+|.+..||..+++.+-.... .. .... ..++..|++++.||.|+.+|..+++.+.... ..
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--------- 309 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELK--------- 309 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcccccc---------
Confidence 788888999999999999887665542 11 1122 2356778888899999999999998765442 11
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.....+... .+..|++++.+|.|++||..
T Consensus 310 --~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 310 --YRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred --CCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 111112222 35688888999999999865
No 326
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.74 E-value=4.8e-09 Score=94.42 Aligned_cols=68 Identities=28% Similarity=0.605 Sum_probs=56.4
Q ss_pred cCCCCCccccccccccccccccc-ccccccHHHHHHhhcCCCCCCCCCCCCccc----cccchHHHHHHHHHH
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNKSDCPCCGCHLTCK----HIFPNLLLNKLLKKT 100 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~----~l~~n~~~~~~~~~~ 100 (597)
..+..-++|.+|..||.||-++. |-||||+.||-++++....||+|....... .++...+|..|+-++
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 35566789999999999999887 999999999999999988899999888644 466667776665544
No 327
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.73 E-value=2.2e-06 Score=81.75 Aligned_cols=217 Identities=10% Similarity=0.146 Sum_probs=133.1
Q ss_pred CcEEEEEEcCC--CCEEEE-----eeCCCcEEEEecccCccCCccCCCCceEe-cCCCceeEEEEecCCCCEEEEe-e--
Q 042883 330 NIISSIEFDRD--DELFAS-----AGVSRRIKIFEFSSVVNEPRDVHYPMVEM-PTRSKLSCLSWNKYTKNLIASS-D-- 398 (597)
Q Consensus 330 ~~v~~i~~~~~--~~~l~t-----~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~~l~s~-~-- 398 (597)
..|...+|+|. +..|+. .+..+.++||.+... ..+... -....=..+.|++ .+++++.- -
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~--------s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~ 244 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN--------SVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTH 244 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC--------CeeeeeeeEeecccEEEEec-CCceEEEEEEEe
Confidence 56788888885 334443 456788999998744 111100 0112223577888 44444321 1
Q ss_pred --------CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc
Q 042883 399 --------YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG 470 (597)
Q Consensus 399 --------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~ 470 (597)
....++|+++......... ...++|.+.+|.|....+.+..|. .+..+.++|++. +.... .
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~------~pa~~s~~~lr~--Nl~~~--~ 313 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGY------MPASVSVFDLRG--NLRFY--F 313 (561)
T ss_pred eecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecc------cccceeeccccc--ceEEe--c
Confidence 1246788887643332222 557899999999954444443322 445589999995 43333 3
Q ss_pred CCCceEEEEecCC-CeEEEeeCC---CcEEEEEcCCCccee-eeeCCCCceeEEEEeecCCEEEEEeC------CCcEEE
Q 042883 471 HKKAVSYVKFLSN-NELASASTD---SSLRLWDVKENLPLH-TFRGHTNEKNFVGLTVNNEYIACGSE------TNEVFV 539 (597)
Q Consensus 471 ~~~~v~~v~~~~~-~~l~s~~~d---~~v~iwd~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~------d~~i~i 539 (597)
....-+.+.|+|. ++++.++.| |.+-+||..+...+. .+.+.. ..-+.|+|||.++.+... |..|.|
T Consensus 314 Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l 391 (561)
T COG5354 314 PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKL 391 (561)
T ss_pred CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEE
Confidence 4455577889999 788887765 679999987654333 555432 345789999998877643 778999
Q ss_pred EEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 540 YHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 540 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
||+...... ..+.+.|.|.|++..+.+.+
T Consensus 392 ~~v~g~~~f-------------------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 392 WDVYGAKVF-------------------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred EEecCchhh-------------------hhhhccccCCcccceeeccC
Confidence 998544322 23456666666665554443
No 328
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.9e-09 Score=91.72 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=42.6
Q ss_pred CcccccccccccccccccccccccHHHHHHhhc-CCCC-CCCCCCCCcccc
Q 042883 38 DTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR-NKSD-CPCCGCHLTCKH 86 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~-~~~~-CP~Cr~~~~~~~ 86 (597)
+..|+||++.-.+|..++|||.||-.||-..|. .... ||.||+...+..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 678999999999999999999999999999554 3344 999999987665
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=2.9e-07 Score=93.61 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=135.6
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 390 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
++..++.|+.-..+..+|+++.+..+...-..+.|.-+.. ++.++.+|... |+|.+-|+++ .+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~-------G~V~LrD~~s-~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTR-------GTVFLRDPNS-FETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeeccc-------ceEEeecCCc-Cceeeeee
Confidence 4556777777778888999988777776555556776665 45778887754 4599999998 88999999
Q ss_pred cCCCceEEEEecCCCeEEEeeC---------CCcEEEEEcCCCcceeeeeCCCCceeEEEEeec-CCEEEEEeCCCcEEE
Q 042883 470 GHKKAVSYVKFLSNNELASAST---------DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN-NEYIACGSETNEVFV 539 (597)
Q Consensus 470 ~~~~~v~~v~~~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~i 539 (597)
+|.+.|.++... ++.|+++|. |..|+|||+|+.+.+.-+.-+.++ .-+.|.|. ...+++++..|...+
T Consensus 215 aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 215 AHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred ccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceee
Confidence 999999988753 478888874 456899999987766655544443 55778887 557788888999999
Q ss_pred EEccC-Ccc-ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 540 YHKAI-SKP-AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 540 wd~~~-~~~-~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|..+ +.+ ....... .....+.+++++++|+.++.|..+|.|.+|-
T Consensus 293 vd~~~lsNP~~~~~~v~---------p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVN---------PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEc---------cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 98432 222 1111111 1144599999999999999999999999996
No 330
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.69 E-value=7e-06 Score=81.98 Aligned_cols=218 Identities=12% Similarity=0.059 Sum_probs=127.7
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCce-eEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKL-SCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE 418 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 418 (597)
.+..+++++.+|.|..+|..++..... ..-...+ ..... ++..+++++.+|.+..||..+|+.+....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~--------~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWR--------VDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeee--------ecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 356788888899999999887722111 1111111 11222 35677888889999999999998877654
Q ss_pred eccceeEE-EEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCce-----EEEEecCCCeEEEeeCC
Q 042883 419 EHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV-----SYVKFLSNNELASASTD 492 (597)
Q Consensus 419 ~~~~~v~~-~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v-----~~v~~~~~~~l~s~~~d 492 (597)
.. ..+.+ ..+. ++. ++.++. ++.++.||..+ ++.+-.+......+ .+... .++.++.+..+
T Consensus 133 ~~-~~~~~~p~v~--~~~-v~v~~~-------~g~l~a~d~~t-G~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~ 199 (377)
T TIGR03300 133 LS-SEVLSPPLVA--NGL-VVVRTN-------DGRLTALDAAT-GERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAG 199 (377)
T ss_pred cC-ceeecCCEEE--CCE-EEEECC-------CCeEEEEEcCC-CceeeEEccCCCceeecCCCCCEE-ECCEEEEECCC
Confidence 32 22222 1221 333 444443 45599999987 55444433221111 01111 13677888889
Q ss_pred CcEEEEEcCCCcceeeeeCCCC----c---eeEEEEee--cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 493 SSLRLWDVKENLPLHTFRGHTN----E---KNFVGLTV--NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 493 ~~v~iwd~~~~~~~~~~~~~~~----~---v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
+.+..+|..+|+.+........ . +..+.-+| .+..+++++.+|.++.||..+++.+.......
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-------- 271 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-------- 271 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--------
Confidence 9999999999876654321100 0 00011111 35677888889999999999998765544211
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...... .+..++.++.||.|..+|..
T Consensus 272 -----~~~p~~--~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 272 -----YQGPAV--DDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred -----ccCceE--eCCEEEEECCCCeEEEEECC
Confidence 111222 35667777788888888764
No 331
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=1.4e-05 Score=71.32 Aligned_cols=229 Identities=12% Similarity=0.114 Sum_probs=119.4
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee
Q 042883 335 IEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV 414 (597)
Q Consensus 335 i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 414 (597)
++.+.+|+.||.. .|..|.|-...+.-..... .. .........=.-++|+| ++.+||.+...|+|++||+.... +
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~-kc-qVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-l 77 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIG-KC-QVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-L 77 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeE-EE-ecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-e
Confidence 5667888877766 4777777665443111100 00 00001122345699999 89999999999999999986533 3
Q ss_pred eEEee-------ccceeEEEEeCCCC-----CceEEeecCCCcccCCCCeEEEEEccC----CCcceeee--c-cCCCce
Q 042883 415 MEYEE-------HEKRAWSVDFSCTE-----PSMLVSGSDDCKVGSADHHIHYYDLRN----ISQPLHVF--N-GHKKAV 475 (597)
Q Consensus 415 ~~~~~-------~~~~v~~~~~~~~~-----~~~l~s~~~d~~~~~~d~~i~i~d~~~----~~~~~~~~--~-~~~~~v 475 (597)
..+.. ....|.++.|.+.. ...|++-..+ |.++=|-+.. +.+....+ . .+...|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-------G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-------GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEecc-------ceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 33322 22456667675422 1233333332 3355444321 11222222 2 245789
Q ss_pred EEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCE-E-EEEeCCC------cEEEEEccCCc
Q 042883 476 SYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEY-I-ACGSETN------EVFVYHKAISK 546 (597)
Q Consensus 476 ~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~-l-~~~~~d~------~i~iwd~~~~~ 546 (597)
.++.++|. +.|++||.... ..+. -.+....+++-.+-.+..+ . ++...|+ +..+|.+-+.+
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~ 220 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK 220 (282)
T ss_pred eEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee
Confidence 99999999 77777664322 0000 0011112222111111111 1 1111111 11233322211
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...... .....|..|..||||..||+...+|.|.+|++-
T Consensus 221 ~fs~~~-----------~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 221 FFSRQG-----------QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred eeeccc-----------cCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 111100 116679999999999999999999999999974
No 332
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=1.6e-07 Score=81.62 Aligned_cols=196 Identities=10% Similarity=0.077 Sum_probs=108.0
Q ss_pred eeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee--ccceeEEEEeCC---------CCCceEEeecCCCcccCC
Q 042883 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE--HEKRAWSVDFSC---------TEPSMLVSGSDDCKVGSA 449 (597)
Q Consensus 381 i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~---------~~~~~l~s~~~d~~~~~~ 449 (597)
++.+.+. ....|+++..++.+..+...++.+...... ..++.+.++.+. -.++-+++++ .
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~-------~ 109 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGY-------A 109 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecC-------C
Confidence 5566666 356777777777776665544332211110 011122222211 0234455555 4
Q ss_pred CCeEEEEEccCCCcceeeecc-CCCceEEEEecCC-CeEEEee-----CCCcEEEEEcCCCcceeeeeCCCCceeEEEEe
Q 042883 450 DHHIHYYDLRNISQPLHVFNG-HKKAVSYVKFLSN-NELASAS-----TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLT 522 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~~-~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s 522 (597)
||.+.+++.+.-......+.. |.+ -.+.++... +.+.+++ .-+..++|+++..+-+..-......|.+++-+
T Consensus 110 dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h 188 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH 188 (319)
T ss_pred CceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence 555888887641111111111 111 112222222 2233222 22345666665422111111112348888889
Q ss_pred ecC-CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc-CCCeEEEecCcccEEEEEec
Q 042883 523 VNN-EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS-DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 523 ~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~~~dg~v~iwd~~ 596 (597)
|.. ..+++|+.||.+.+||.+.......+.. .|..+|+.|-|+| ++..|++++.||.+.-||-+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~----------ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK----------AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHHH----------HhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 874 5677888999999999988754433332 3699999999998 56789999999999999865
No 333
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=1.3e-05 Score=73.83 Aligned_cols=208 Identities=14% Similarity=0.105 Sum_probs=140.7
Q ss_pred eeEEEEecCCCCEEEEeeCCCc-EEEEeCCCCeeeeEEeeccceeE--EEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 381 LSCLSWNKYTKNLIASSDYDGI-VTIWDVTTSQSVMEYEEHEKRAW--SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 381 i~~v~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
..+++.+|.....++.+-.-|. ..+||..+++....+....+.-. .-.|++ ++.+|++.-.|.. ...|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~--~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYE--TGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccC--CCcEEEEEEE
Confidence 4467888866777777777765 67899999988776654333221 368998 8888887765542 3578899999
Q ss_pred ccCCCcceeeeccCCCceEEEEecCCC-eEEEee------------------CCCcEEEEEcCCCcceeeee----CCCC
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLSNN-ELASAS------------------TDSSLRLWDVKENLPLHTFR----GHTN 514 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~------------------~d~~v~iwd~~~~~~~~~~~----~~~~ 514 (597)
.......+..+..|.-..-.+.+.|++ .|+++. ++-.+...|..+|+.+.+.. -|..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 995567778888777667788889995 565542 23456677788888887743 3677
Q ss_pred ceeEEEEeecCCEEEEEeCCCc-------EEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-C
Q 042883 515 EKNFVGLTVNNEYIACGSETNE-------VFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-R 586 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~ 586 (597)
.+..++++++|..++..-..|. |.+++ .+..+..+..+... ...=...|-+|++++++.++++.+ .
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~----~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQ----WRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHH----HHhhCCceEEEEEeCCCCEEEEECCC
Confidence 8999999999987776544332 33333 33333333222100 000156799999999998876554 6
Q ss_pred cccEEEEEecC
Q 042883 587 KGAIKVLVLAA 597 (597)
Q Consensus 587 dg~v~iwd~~~ 597 (597)
-|.+.+||..+
T Consensus 238 Gg~~~~~d~~t 248 (305)
T PF07433_consen 238 GGRVAVWDAAT 248 (305)
T ss_pred CCEEEEEECCC
Confidence 78899998754
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.2e-07 Score=91.77 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=114.6
Q ss_pred cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe---------------eeeEEeeccceeEEEEeCCCCCceEEee
Q 042883 376 PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ---------------SVMEYEEHEKRAWSVDFSCTEPSMLVSG 440 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 440 (597)
+.+....|++|+. ...++++|+.||.++|..+.+.. .-+++.||.+.|.-+.|+. ....+.+.
T Consensus 12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS 89 (1189)
T ss_pred CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence 4566788999998 78899999999999999875431 1255779999999999997 66777776
Q ss_pred cCCCcccCCCCeEEEEEccCCCcceeeec-cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcce-eeeeCCCCcee
Q 042883 441 SDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPL-HTFRGHTNEKN 517 (597)
Q Consensus 441 ~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~ 517 (597)
..+|. |.+|-+-.+...-..+. ...+.|.+++|+.+ ..+...-.||.|.+=.+..++.- +.++ .....
T Consensus 90 Dt~Gl-------IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~ 160 (1189)
T KOG2041|consen 90 DTSGL-------IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLA 160 (1189)
T ss_pred CCCce-------EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhecc
Confidence 65554 99999887333333332 24567899999988 66777777777776665533211 1122 12235
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 518 FVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 518 ~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
.+.|++|...++.+-.+|.+++||...
T Consensus 161 hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 161 HVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred ceeecccHHHHHhhhcCCcEEEecccc
Confidence 788999999888888899999999654
No 335
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.2e-09 Score=95.18 Aligned_cols=60 Identities=32% Similarity=0.799 Sum_probs=49.9
Q ss_pred cCcCCCCCccccccccccccccccc-ccccccHHHHHHhhcCC-CCCCCCCCCCcc-ccccch
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNK-SDCPCCGCHLTC-KHIFPN 90 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~-~~CP~Cr~~~~~-~~l~~n 90 (597)
....|.-++.|||||++++...+.+ |+|-||..||-..+... ..||.||+.+.. +.|++.
T Consensus 36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 4567888999999999999999888 99999999998877644 459999999954 456643
No 336
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=1.7e-05 Score=73.65 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=110.7
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEE-EEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee
Q 042883 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWS-VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF 468 (597)
Q Consensus 390 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~ 468 (597)
++..+++++.++.|..||..+|+.+..+.. ...+.. .... ++.+++... ++.|+.+|..+ ++.+-..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~--~~~v~v~~~--------~~~l~~~d~~t-G~~~W~~ 102 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD--GGRVYVGTS--------DGSLYALDAKT-GKVLWSI 102 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE--TTEEEEEET--------TSEEEEEETTT-SCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec--ccccccccc--------eeeeEecccCC-cceeeee
Confidence 356777778899999999999998877764 222221 2222 445544432 44599999887 5555442
Q ss_pred -ccCC---C--ceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCce----------eEEEEeecCCEEEEEe
Q 042883 469 -NGHK---K--AVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEK----------NFVGLTVNNEYIACGS 532 (597)
Q Consensus 469 -~~~~---~--~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v----------~~v~~s~~g~~l~~~~ 532 (597)
.... . ......+. ++.++++..++.|..+|+.+|+.+.......... ..-.+..++ .++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 180 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS 180 (238)
T ss_dssp EE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC
T ss_pred ccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc
Confidence 2221 1 11122222 4678888889999999999999988876533221 111122234 777777
Q ss_pred CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 533 ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 533 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.++.+.-+|+.+++.+..... ..+..+ ....+..|+.++.++.|..||+.+
T Consensus 181 ~~g~~~~~d~~tg~~~w~~~~-------------~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 181 GDGRVVAVDLATGEKLWSKPI-------------SGIYSL-PSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp CTSSEEEEETTTTEEEEEECS-------------S-ECEC-EECCCTEEEEEETTTEEEEEETTT
T ss_pred CCCeEEEEECCCCCEEEEecC-------------CCccCC-ceeeCCEEEEEeCCCEEEEEECCC
Confidence 777644449999986632221 112221 345677888777999999999864
No 337
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.3e-07 Score=59.23 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=36.7
Q ss_pred CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
++++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 338
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.59 E-value=7.7e-05 Score=71.49 Aligned_cols=223 Identities=9% Similarity=0.019 Sum_probs=122.0
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEe-e---------CCCcEEEEeCCCCeeeeEEeec
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASS-D---------YDGIVTIWDVTTSQSVMEYEEH 420 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~-~---------~dg~i~iwd~~~~~~~~~~~~~ 420 (597)
++|.+.|..+. .......-......+ ++| +++.|+++ + .+..|.+||..+.+.+..+.-.
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 78999998876 222222212222334 889 55555554 4 5789999999999998887532
Q ss_pred -------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCC
Q 042883 421 -------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDS 493 (597)
Q Consensus 421 -------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~ 493 (597)
......++++| ++++++....+ .++.|.++|+.+ ++.+..+.-.. ...-...++++. .+-+.||
T Consensus 97 ~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~-----p~~~V~VvD~~~-~kvv~ei~vp~-~~~vy~t~e~~~-~~~~~Dg 167 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTP-DNKTLLFYQFS-----PSPAVGVVDLEG-KAFVRMMDVPD-CYHIFPTANDTF-FMHCRDG 167 (352)
T ss_pred CCchhhccCccceEEECC-CCCEEEEecCC-----CCCEEEEEECCC-CcEEEEEeCCC-CcEEEEecCCcc-EEEeecC
Confidence 22344789999 77776655422 245699999998 67777665322 112222222222 2333445
Q ss_pred cEEEEEcCC-Ccce-ee---eeCCCCce-eEEEEee-cCCEEEEEeCCCcEEEEEccCCc-----cccccccCCCCCCCc
Q 042883 494 SLRLWDVKE-NLPL-HT---FRGHTNEK-NFVGLTV-NNEYIACGSETNEVFVYHKAISK-----PAASHRFGSDADHVD 561 (597)
Q Consensus 494 ~v~iwd~~~-~~~~-~~---~~~~~~~v-~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~ 561 (597)
......+.. |+.. .. +.+...++ ..-.|.+ +|.++++... |.|++.|+.... ....+.++....
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~--- 243 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD--- 243 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc---
Confidence 444433322 2211 11 11100000 0014456 7888877766 999999965433 222222211000
Q ss_pred CcCCCcceEEEEEccCCCeEEEec----------CcccEEEEEecC
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTAN----------RKGAIKVLVLAA 597 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~----------~dg~v~iwd~~~ 597 (597)
.-..+.+.-++++|+++.++... ..+.|.++|..+
T Consensus 244 -~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 244 -GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred -ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 11234455599999998887732 224688887653
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.5e-06 Score=87.50 Aligned_cols=187 Identities=14% Similarity=0.189 Sum_probs=127.2
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
...++|++++ +.+|+-|..+|.|++++... .. .+...|... . .+|.++++|+.||+ |.|..
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~-~~Gey~asCS~DGk-------v~I~s 99 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------I-LEGEYVASCSDDGK-------VVIGS 99 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------c-cCCceEEEecCCCc-------EEEee
Confidence 4456777776 57999999999999999754 33 333344433 3 38999999998776 78887
Q ss_pred ccCCCcceeeeccCCCceEEEEecCC------CeEEEeeCCCcEEEEEcCC-C-cceeeeeCCCCceeEEEEeecCCEEE
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLSN------NELASASTDSSLRLWDVKE-N-LPLHTFRGHTNEKNFVGLTVNNEYIA 529 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~~------~~l~s~~~d~~v~iwd~~~-~-~~~~~~~~~~~~v~~v~~s~~g~~l~ 529 (597)
+-+ ......+. ...++.+++++|+ +.+++||..| +.++.-+- + +.-..+..-.++|.++.| .|++||
T Consensus 100 l~~-~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 100 LFT-DDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred ccC-CccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEE
Confidence 776 33333333 4568899999998 5599999999 77776331 1 111134445678999998 688998
Q ss_pred EEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 530 CGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
=++.+| |+|||+.+++.+..+..+..... .......+.|.++.+. +.| ...+|+|..+.
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R-----~e~fpphl~W~~~~~L-VIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVR-----PELFPPHLHWQDEDRL-VIG-WGDSVKICSIK 233 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCC-----cccCCCceEecCCCeE-EEe-cCCeEEEEEEe
Confidence 887777 99999999988877766542211 1445567889876544 333 33357776653
No 340
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.57 E-value=2.5e-05 Score=72.76 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=120.1
Q ss_pred EEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC
Q 042883 383 CLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462 (597)
Q Consensus 383 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~ 462 (597)
++.|.+.++.++++....+.|..|+..++.... +.. .. ..++++...++.++++.. + .+.++|+.+ +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~g~l~v~~~-~--------~~~~~d~~~-g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPDGRLYVADS-G--------GIAVVDPDT-G 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTTSEEEEEET-T--------CEEEEETTT-T
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccCCEEEEEEc-C--------ceEEEecCC-C
Confidence 578887667788887788999999998775543 222 22 677778732666666553 2 257778876 3
Q ss_pred cceeeecc-----CCCceEEEEecCCCeEEEee-CC--------CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEE
Q 042883 463 QPLHVFNG-----HKKAVSYVKFLSNNELASAS-TD--------SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 463 ~~~~~~~~-----~~~~v~~v~~~~~~~l~s~~-~d--------~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 528 (597)
+....... .....+.+++.|++.|..+. .. |.|..++.. ++..... ..-...+.++|+|+|+.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchhe
Confidence 32222221 34568899999995554443 22 457777766 4433333 334556899999999876
Q ss_pred E-EEeCCCcEEEEEccCCcc-cc----ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 529 A-CGSETNEVFVYHKAISKP-AA----SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 529 ~-~~~~d~~i~iwd~~~~~~-~~----~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+ +-+..+.|..|++..... +. ...+.. ..+..-.++++.+|+++++....+.|.++|.
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPG---------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS---------SSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCC---------CCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 5 556788899999864332 11 111110 0235788999999998888777888888874
No 341
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.53 E-value=5.3e-08 Score=65.18 Aligned_cols=41 Identities=29% Similarity=0.636 Sum_probs=29.3
Q ss_pred CCcccccccccccccccc-cccccccHHHHHHhhcCCC--CCCC
Q 042883 37 RDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKS--DCPC 77 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~~~--~CP~ 77 (597)
..+.|||.+..|.+||.- .|||+|.+..|..|+.... .||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 358999999999999865 7999999999999994433 3998
No 342
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.5e-06 Score=81.61 Aligned_cols=208 Identities=12% Similarity=0.109 Sum_probs=140.1
Q ss_pred CCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC--C-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeE
Q 042883 377 TRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT--S-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453 (597)
Q Consensus 377 ~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i 453 (597)
|...|+.+... -.+++.+++.||.++.|--.. + +.+..+..|.+.|.+++.+. ++.++.|.+. .|..+
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d------~Dhs~ 78 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVED------PDHSV 78 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccC------cccce
Confidence 56677777655 478999999999999997432 1 34455667888999999987 8899998775 23448
Q ss_pred EEEEccCCCcceeeeccCCCceEEEEe--cCC---CeEEEe-eCCCcEEEEEcCCC--cceeeeeCCCCceeEEEEeecC
Q 042883 454 HYYDLRNISQPLHVFNGHKKAVSYVKF--LSN---NELASA-STDSSLRLWDVKEN--LPLHTFRGHTNEKNFVGLTVNN 525 (597)
Q Consensus 454 ~i~d~~~~~~~~~~~~~~~~~v~~v~~--~~~---~~l~s~-~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~v~~s~~g 525 (597)
++||+.+ -..+..++. ......+.| ++. ..++++ -.++.+.|+|-+.. +....-.-|..+|..+.+.+-+
T Consensus 79 KvfDvEn-~DminmiKL-~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 79 KVFDVEN-FDMINMIKL-VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eEEEeec-cchhhhccc-ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 9999886 222222221 111112223 333 234443 36788999998763 3344445689999999999999
Q ss_pred CEEEEEeCCCcEEEEEccC------CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 526 EYIACGSETNEVFVYHKAI------SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 526 ~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
..+++....|.|.-|.... .+....++........- -.....+++.|+|+|..+.+-+.|..|+++++.+
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~--K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP--KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhccc--ccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 9999999999999998763 11111111111111111 1266788999999999999999999999998753
No 343
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.9e-08 Score=94.00 Aligned_cols=51 Identities=31% Similarity=0.800 Sum_probs=46.0
Q ss_pred CCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 34 EVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
.+..++.|-||+..|-.|+++||||+||..||.+.......||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 457789999999999999999999999999999988877779999988763
No 344
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.49 E-value=4.5e-06 Score=78.50 Aligned_cols=51 Identities=27% Similarity=0.687 Sum_probs=42.0
Q ss_pred cCcCCCCCccccccccccccc----ccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 31 RDTEVDRDTLCPICKQLMTDA----FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P----~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
+...+-|.-|||||||...+- +++.|.|+|--.|+.+||. ..||+||--..
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 344566678999999999976 4677999999999999985 46999997666
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.46 E-value=8.8e-08 Score=93.63 Aligned_cols=206 Identities=11% Similarity=0.207 Sum_probs=134.4
Q ss_pred CCceeEEEEecCCC-CEEEEeeCCCcEEEEeCCCCee--eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 378 RSKLSCLSWNKYTK-NLIASSDYDGIVTIWDVTTSQS--VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 378 ~~~i~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
...+.|++++-+.. .++++|..+|.|-+-.++...- -....++..+.++++|++.|.++||+|-+... .|..+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr---nds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR---NDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhc---ccCCcc
Confidence 34677888776333 6888999999999988765322 23345778899999999988888887744333 467799
Q ss_pred EEEccCCC-cceee--ec-cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc-ceeeeeCCCCceeEEEEee-cCCE
Q 042883 455 YYDLRNIS-QPLHV--FN-GHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL-PLHTFRGHTNEKNFVGLTV-NNEY 527 (597)
Q Consensus 455 i~d~~~~~-~~~~~--~~-~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~v~~s~-~g~~ 527 (597)
|||+.+.- .|... |. +......+++|..+ ..+++|.....+.++|+|... ....+ .+..+..+.++| .+.|
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 99998621 12111 11 23456678899877 667788888899999998422 22222 234566788888 6777
Q ss_pred EEEEeCCCcEEEEEc-cC-CccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEec-CcccEEEEEec
Q 042883 528 IACGSETNEVFVYHK-AI-SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 528 l~~~~~d~~i~iwd~-~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~-~dg~v~iwd~~ 596 (597)
+++- .||.|.+||. .. ..++....... ..-...+..++|.|... .+++.. ..++|+.+|+.
T Consensus 211 ~cs~-~dg~iAiwD~~rnienpl~~i~~~~-------N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSN-SDGDIAIWDTYRNIENPLQIILRNE-------NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eecc-ccCceeeccchhhhccHHHHHhhCC-------CCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7665 4999999993 22 23333222110 00023589999998543 344444 56788888864
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=2.8e-05 Score=82.30 Aligned_cols=238 Identities=11% Similarity=0.124 Sum_probs=136.2
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
.+.|.++.|..++.-++.+..+|.|.+-|..+. .......-..+|.+++|+| +...++..+..+++.+-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--------~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT- 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--------ELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMT- 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--------ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEe-
Confidence 368999999999999999999999999988765 2222223467899999999 788888887777776543
Q ss_pred CCCeeeeEEee-----ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 409 TTSQSVMEYEE-----HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 409 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
.+-.++..-.- ..+..-.+-|-. . ..-+.|+ .|.....+.....+.+.... -.+.=++|.|--|
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGr-k-eTqfrgs--------~gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgD 206 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGR-K-ETQFRGS--------EGRQAARQKIEKEKALEQIE-QDDHKTSISWRGD 206 (1265)
T ss_pred ccccchhccccccccccccccceecccc-c-ceeeecc--------hhhhcccccccccccccchh-hccCCceEEEccC
Confidence 22222221110 011222233321 0 0011111 11111111111111111111 1123367899888
Q ss_pred C-eEEEe----eCC-CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEE---eCCCcEEEEEccCCccccccccC
Q 042883 484 N-ELASA----STD-SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACG---SETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 484 ~-~l~s~----~~d-~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
| ++++. ..+ ..|+|||.. |..-..-....+.-.+++|-|.|..+++- +.|+.|.+|..+.- .-..+..+
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL-~hg~f~l~ 284 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL-RHGEFVLP 284 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc-cccccccC
Confidence 6 55552 234 789999966 44333322233334579999999999875 44678999985432 21111111
Q ss_pred CCCCCCcCcCCCcceEEEEEccCCCeEEE---ecCcccEEEEEec
Q 042883 555 SDADHVDDDMGSYFISAVCWKSDSPTMLT---ANRKGAIKVLVLA 596 (597)
Q Consensus 555 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s---~~~dg~v~iwd~~ 596 (597)
... ....|..++|+.++..|++ ......|++|-+.
T Consensus 285 ~p~-------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 285 FPL-------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred Ccc-------cccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 100 1334999999999999887 4555559999764
No 347
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.7e-05 Score=80.28 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=101.6
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC----CCCEEEEeeCCCcEEEEeCC--CCee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY----TKNLIASSDYDGIVTIWDVT--TSQS 413 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~----~~~~l~s~~~dg~i~iwd~~--~~~~ 413 (597)
+|.++++|+.||+|.|..+.+. ..........++.+|+++|+ ....+++|+.-| +.++.-. ..+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~--------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~ 152 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTD--------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD 152 (846)
T ss_pred CCceEEEecCCCcEEEeeccCC--------ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc
Confidence 5999999999999999988776 33444556778999999994 357899999888 7776521 1111
Q ss_pred eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCC------ceEEEEecCCCeEE
Q 042883 414 VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK------AVSYVKFLSNNELA 487 (597)
Q Consensus 414 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------~v~~v~~~~~~~l~ 487 (597)
...+....++|.++.|. ++++|-++++| |+|||+.. ++.+..+..... -...+.|.++..|+
T Consensus 153 ~v~l~~~eG~I~~i~W~---g~lIAWand~G--------v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWR---GNLIAWANDDG--------VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred ceeeecCccceEEEEec---CcEEEEecCCC--------cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence 12344567899999995 68999998877 79999987 555555443222 23457888887777
Q ss_pred EeeCCCcEEEEEcCC
Q 042883 488 SASTDSSLRLWDVKE 502 (597)
Q Consensus 488 s~~~d~~v~iwd~~~ 502 (597)
.|-.| +|+|..++.
T Consensus 221 IGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 221 IGWGD-SVKICSIKK 234 (846)
T ss_pred EecCC-eEEEEEEec
Confidence 76655 789988873
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=1.8e-07 Score=91.44 Aligned_cols=199 Identities=17% Similarity=0.263 Sum_probs=129.3
Q ss_pred CcEEEEEEcCCC--CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee----CCCcE
Q 042883 330 NIISSIEFDRDD--ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD----YDGIV 403 (597)
Q Consensus 330 ~~v~~i~~~~~~--~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~----~dg~i 403 (597)
..+.|+++.-+. ..+++|..+|.|.+-.+...... ......++....++++|++-+.+.||+|- .|..+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 356677776543 46788999999999887654111 22344466788999999998788888884 35689
Q ss_pred EEEeCCCC--eee--eEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 404 TIWDVTTS--QSV--MEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 404 ~iwd~~~~--~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
.|||+.++ .+. ..|. +......+++|.. +..++.+|...+. +.++|+|........+ ....+..+
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~-------~~ifdlRqs~~~~~sv--nTk~vqG~ 201 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRS-------VHIFDLRQSLDSVSSV--NTKYVQGI 201 (783)
T ss_pred cceecccccCCCccccccccccccCcccccccc-Ccchhhcccccch-------hhhhhhhhhhhhhhhh--hhhhcccc
Confidence 99999876 221 1122 2334566888884 7778888775444 8999999422222222 23456777
Q ss_pred EecCC--CeEEEeeCCCcEEEEE-cCC-CcceeeeeCCCC----ceeEEEEeecCC-EEEEEe-CCCcEEEEEccC
Q 042883 479 KFLSN--NELASASTDSSLRLWD-VKE-NLPLHTFRGHTN----EKNFVGLTVNNE-YIACGS-ETNEVFVYHKAI 544 (597)
Q Consensus 479 ~~~~~--~~l~s~~~d~~v~iwd-~~~-~~~~~~~~~~~~----~v~~v~~s~~g~-~l~~~~-~d~~i~iwd~~~ 544 (597)
.+.|- +++++.. ||.|.+|| .++ ..++.++....+ .+..++|.|... .+++.. ..++|++||+..
T Consensus 202 tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 88884 5555544 99999999 443 233444332222 378899999632 444444 457899999763
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=9.4e-05 Score=64.91 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=48.3
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEE-EEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCL-SWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE 418 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 418 (597)
-|++++.|.++|.+++.++.++. ....+..-+.|-+- ...+ ++..+..|+.|+..+..|..+..++...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs--------~~w~f~~~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGS--------QIWNFVILETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchh--------heeeeeehhhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence 36678999999999999998871 11111111122111 1233 67899999999999999999888777654
No 350
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.6e-06 Score=75.93 Aligned_cols=99 Identities=19% Similarity=0.306 Sum_probs=76.9
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCe
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHH 452 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~ 452 (597)
....+...|.+++|+|....++..++.+..|+|.|+++...+..+..+ ..+|+++|.-++.+++..|- .+|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl-------~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL-------QNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec-------cCce
Confidence 445567789999999976668999999999999999999988888777 78999999986767777665 4556
Q ss_pred EEEEEccCCCcceeeecc--CCCceEEEE
Q 042883 453 IHYYDLRNISQPLHVFNG--HKKAVSYVK 479 (597)
Q Consensus 453 i~i~d~~~~~~~~~~~~~--~~~~v~~v~ 479 (597)
|.|||++.+..++..+.+ ...+|..++
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIA 288 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeec
Confidence 999999986666655543 223444443
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=2.6e-05 Score=79.55 Aligned_cols=195 Identities=12% Similarity=0.159 Sum_probs=126.9
Q ss_pred EecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccce-eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC--C
Q 042883 386 WNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKR-AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI--S 462 (597)
Q Consensus 386 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~--~ 462 (597)
|++ ++..++.|+.+|.|.+++ ++-+..+.+..+... |..+-.. ++..++++.+.|+.. .--.++|||+... .
T Consensus 31 ~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~--np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 31 CSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQG--NPVLLKIWDLEKVDKN 105 (933)
T ss_pred EcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcc-cCceEEEEEeecCCC--CceEEEEecccccCCC
Confidence 556 678999999999999887 344555777777766 4444443 355788888877651 1226999998742 1
Q ss_pred c-c--e---eeec----cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcC---C-CcceeeeeCCCCceeEEEEeecCCE
Q 042883 463 Q-P--L---HVFN----GHKKAVSYVKFLSN-NELASASTDSSLRLWDVK---E-NLPLHTFRGHTNEKNFVGLTVNNEY 527 (597)
Q Consensus 463 ~-~--~---~~~~----~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~---~-~~~~~~~~~~~~~v~~v~~s~~g~~ 527 (597)
. + + ..+. ....++.+++++.+ ..+|+|-.+|.|..+.-. . +....-......+|+++++..+|..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 1 2 2 1111 13467889999998 889999999999988521 1 2212222234668999999999887
Q ss_pred EEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 528 IACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 528 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++-......|.+|.+....+..... ++|+.++++..|++....++.++.. .|.+|+.+
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~l----------d~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd 243 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVL----------DNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSD 243 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeee----------ccCCccceeeecCCCCccEEEecCc-eEEEEcCC
Confidence 3333345679999987443222211 2357788999998766646555544 47777643
No 352
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.7e-07 Score=85.10 Aligned_cols=48 Identities=25% Similarity=0.626 Sum_probs=41.9
Q ss_pred CCCccccccccc-ccc------------cccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 36 DRDTLCPICKQL-MTD------------AFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 36 ~~~l~C~IC~~~-f~~------------P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
..+-+|.||+|- |.. |+-|||||.|-..|+..|.+..+.||.||.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 346789999998 443 499999999999999999999999999999854
No 353
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.7e-07 Score=86.94 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=41.1
Q ss_pred ccccccccccccc---ccccccccccHHHHHHhhcCCCC-CCCCCCCCcc
Q 042883 39 TLCPICKQLMTDA---FMTACGHSFCYTCIFTHLRNKSD-CPCCGCHLTC 84 (597)
Q Consensus 39 l~C~IC~~~f~~P---~~l~CgH~FC~~Cl~~~~~~~~~-CP~Cr~~~~~ 84 (597)
.+|.||+|.|.+= +.|||+|.|-..||-.|+....+ ||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4999999999964 78999999999999999998866 9999997753
No 354
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5.7e-06 Score=79.06 Aligned_cols=63 Identities=24% Similarity=0.499 Sum_probs=51.1
Q ss_pred Ccccccccccccc------cccccccccccHHHHHHhhcCCCC-CCCCCCCCccc-----cccchHHHHHHHHHH
Q 042883 38 DTLCPICKQLMTD------AFMTACGHSFCYTCIFTHLRNKSD-CPCCGCHLTCK-----HIFPNLLLNKLLKKT 100 (597)
Q Consensus 38 ~l~C~IC~~~f~~------P~~l~CgH~FC~~Cl~~~~~~~~~-CP~Cr~~~~~~-----~l~~n~~~~~~~~~~ 100 (597)
.+.|-||-+.|.. |..|.|||+||..|+......... ||.||.....+ .+.+|+.+-..+...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 4679999999984 899999999999999988876554 99999996433 477888887776654
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.35 E-value=0.0003 Score=64.10 Aligned_cols=203 Identities=12% Similarity=0.132 Sum_probs=114.5
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeec-cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEH-EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
...+.+++|+|+++.++++....+.|..++. +|+.+..+.-. .+..-+|++.. ++.++++.-. ++.+.++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er-------~~~L~~~ 91 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEER-------DQRLYIF 91 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT-------TTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcC-------CCcEEEE
Confidence 3459999999966778888888889988986 47777776532 35688899985 6666665543 3458888
Q ss_pred EccCCCcce-----eee-----ccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC---Ccceeee--------eCCCC
Q 042883 457 DLRNISQPL-----HVF-----NGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE---NLPLHTF--------RGHTN 514 (597)
Q Consensus 457 d~~~~~~~~-----~~~-----~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~---~~~~~~~--------~~~~~ 514 (597)
++......+ ..+ ..++..+-.++|++. +.|+++-...-..||.+.. ...+... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 884322211 111 124567899999998 7777777777777777654 2221111 12334
Q ss_pred ceeEEEEeec-CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 515 EKNFVGLTVN-NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 515 ~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
.+.+++++|. |.+++.+..+..|.++| ..|+++..+.+........ ..-...-+|+|+++|.++++. .-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~--~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS--KDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S--S---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc--cccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 5788999997 56667777788899999 6777776666542110000 012357889999999765554 55555554
No 356
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.34 E-value=1e-06 Score=55.02 Aligned_cols=37 Identities=32% Similarity=0.706 Sum_probs=34.4
Q ss_pred cceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEE
Q 042883 463 QPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWD 499 (597)
Q Consensus 463 ~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd 499 (597)
+++.++.+|.+.|++|+|+|+ ..|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457788999999999999999 8999999999999998
No 357
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.33 E-value=8e-05 Score=69.07 Aligned_cols=184 Identities=10% Similarity=0.041 Sum_probs=110.5
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE-e
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY-E 418 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~ 418 (597)
++..+++++.++.|..||..++. ..........+...-.. .+..++++..++.++.+|..+|+.+... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~--------~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGK--------VLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSE--------EEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--------EEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecc
Confidence 56677777889999999998872 11111111111111111 3556677777889999999999988874 3
Q ss_pred ecc-----ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc----------e-EEEEecC
Q 042883 419 EHE-----KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA----------V-SYVKFLS 482 (597)
Q Consensus 419 ~~~-----~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----------v-~~v~~~~ 482 (597)
... .......+ .+..++.+.. ++.|..+|+.+ ++.+-........ + ..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAV---DGDRLYVGTS-------SGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS- 172 (238)
T ss_dssp -SSCTCSTB--SEEEE---ETTEEEEEET-------CSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-
T ss_pred ccccccccccccCceE---ecCEEEEEec-------cCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-
Confidence 221 11122222 2444444443 45599999987 6665555433211 1 233333
Q ss_pred CCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccc
Q 042883 483 NNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 483 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 548 (597)
++.++.++.++.+.-+|+.+++.+-... ...+.. ....++..|++++.++.|..||+.+|+.+
T Consensus 173 ~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 173 DGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 3577778878864444999998664322 222222 14567788888889999999999998865
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.32 E-value=3.6e-05 Score=80.71 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=100.6
Q ss_pred CCCEEEEe-eCCCcEEEEeCCCCeeeeEEeeccce-eEEEEeCCC-----CCceEEeecCCCcccCCCCeEEEEEccCCC
Q 042883 390 TKNLIASS-DYDGIVTIWDVTTSQSVMEYEEHEKR-AWSVDFSCT-----EPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462 (597)
Q Consensus 390 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-----~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~ 462 (597)
+.++|+.. .....|+-.|+..|+.+..+..+... |.+++-... ....|+ |..++.+..||+|-.+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tfl--------Gls~n~lfriDpR~~~ 563 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFL--------GLSDNSLFRIDPRLSG 563 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEE--------EECCCceEEeccCCCC
Confidence 45555554 34578999999999999999876644 555543210 112222 3345669999999754
Q ss_pred cceeeec----cCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEE
Q 042883 463 QPLHVFN----GHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 538 (597)
Q Consensus 463 ~~~~~~~----~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 538 (597)
..+..-. ......++++-+.+|+||+|+.+|.|++||-...+....+++-..+|.+|..+.||+||++.+ +..|.
T Consensus 564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 564 NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred CceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence 3322211 233567888888889999999999999999554444455667789999999999999988665 56677
Q ss_pred EEEcc
Q 042883 539 VYHKA 543 (597)
Q Consensus 539 iwd~~ 543 (597)
+++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 77753
No 359
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.31 E-value=3e-05 Score=76.28 Aligned_cols=122 Identities=17% Similarity=0.228 Sum_probs=81.4
Q ss_pred ceeEEEEeCCCCCceEEeecCCCcc-cCCCCeEEEEEccCCC-cceeee-ccCCCceEEEEecCC-CeEEEeeCCCcEEE
Q 042883 422 KRAWSVDFSCTEPSMLVSGSDDCKV-GSADHHIHYYDLRNIS-QPLHVF-NGHKKAVSYVKFLSN-NELASASTDSSLRL 497 (597)
Q Consensus 422 ~~v~~~~~~~~~~~~l~s~~~d~~~-~~~d~~i~i~d~~~~~-~~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~d~~v~i 497 (597)
....++.|+-..++.+.+....-.. |...-.-.+|+...+. +.+... ....+.|.+.+++|+ ..++.|..||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3456777776555555554321110 0011224566665421 111111 236778999999999 89999999999999
Q ss_pred EEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC
Q 042883 498 WDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 545 (597)
||...+.. .+....-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 286 yD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99876532 23233455688999999999999999999999998654
No 360
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=0.00014 Score=72.96 Aligned_cols=220 Identities=7% Similarity=-0.029 Sum_probs=122.5
Q ss_pred CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-EEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee
Q 042883 341 DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-LSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE 419 (597)
Q Consensus 341 ~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 419 (597)
+..++.++.+|.+..+|..++...... .....+.+ ... .+..++.+..+|.+.-+|..+|+.+..+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~--------~~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQT--------KVAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccc--------cCCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 456777888999999999887322211 11111111 111 134667777889999999999998877653
Q ss_pred ccceeEE-EEeCC--CCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--CC--C---ceEEEEecC---CCeE
Q 042883 420 HEKRAWS-VDFSC--TEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--HK--K---AVSYVKFLS---NNEL 486 (597)
Q Consensus 420 ~~~~v~~-~~~~~--~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~--~---~v~~v~~~~---~~~l 486 (597)
....+.. ..-+| .++. ++.++. ++.+..+|..+ ++.+-.... .. . ....+..+| ++.+
T Consensus 189 ~~~~~~~~~~~sP~v~~~~-v~~~~~-------~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 189 DVPSLTLRGESAPATAFGG-AIVGGD-------NGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred CCCcccccCCCCCEEECCE-EEEEcC-------CCEEEEEEccC-ChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 2111000 00011 0223 333332 45578888776 433322210 00 0 011111222 4678
Q ss_pred EEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCC
Q 042883 487 ASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGS 566 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 566 (597)
+.++.+|.+..+|..+|+.+-.... .....+ ...+..|+.++.+|.+..+|..+++.+....... .
T Consensus 260 y~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----------~ 325 (394)
T PRK11138 260 YALAYNGNLVALDLRSGQIVWKREY--GSVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL----------H 325 (394)
T ss_pred EEEEcCCeEEEEECCCCCEEEeecC--CCccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC----------C
Confidence 8888899999999999887654431 111122 2356677888899999999999987755432110 0
Q ss_pred cceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 567 YFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 567 ~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
....+... .+.+|+.++.||.|+++|.+
T Consensus 326 ~~~~sp~v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 326 RLLTAPVL--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred CcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence 11111122 14567777888888877754
No 361
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=2.2e-05 Score=77.23 Aligned_cols=110 Identities=11% Similarity=0.254 Sum_probs=77.4
Q ss_pred CceEEEEecCC--CeEEE----eeCCCc----EEEEEcCCCcce----eeeeCCCCceeEEEEeecCCEEEEEeCCCcEE
Q 042883 473 KAVSYVKFLSN--NELAS----ASTDSS----LRLWDVKENLPL----HTFRGHTNEKNFVGLTVNNEYIACGSETNEVF 538 (597)
Q Consensus 473 ~~v~~v~~~~~--~~l~s----~~~d~~----v~iwd~~~~~~~----~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 538 (597)
....++.|+-. ..+.+ .+.+|. ..+|+...++.- ..+ .....+.+++++|+...++.|..||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence 33456666643 44443 233443 345666544321 122 4567889999999999999999999999
Q ss_pred EEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 539 VYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+||...+....... .-.++.++|+|+|.++++|+..|.+.+||+.
T Consensus 285 LyD~~~~~t~~~ka-------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 285 LYDTTRGVTLLAKA-------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEcCCCeeeeeee-------------cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99987663332211 4457889999999999999999999999974
No 362
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=9.1e-05 Score=75.71 Aligned_cols=199 Identities=14% Similarity=0.176 Sum_probs=121.3
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC-----cEEEEeCCC
Q 042883 336 EFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG-----IVTIWDVTT 410 (597)
Q Consensus 336 ~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 410 (597)
.|++++..++.|+.+|.|.+++-.-. .......+...+...-|.-++.++|++.+.|+ .|+||+++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~--------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ--------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce--------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 37888999999999999888774332 00111122223222334433456787776654 489999853
Q ss_pred C------eeee--EEee-----ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE--c-cCCCcceeeeccCCCc
Q 042883 411 S------QSVM--EYEE-----HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD--L-RNISQPLHVFNGHKKA 474 (597)
Q Consensus 411 ~------~~~~--~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d--~-~~~~~~~~~~~~~~~~ 474 (597)
- .++. .+.+ ...++.+++++. +-..+|.|-.+|. |..+. + |..+...........+
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~-------V~~~~GDi~RDrgsr~~~~~~~~~p 173 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGL-------VICYKGDILRDRGSRQDYSHRGKEP 173 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcE-------EEEEcCcchhccccceeeeccCCCC
Confidence 2 2231 1112 246788899987 6777787776555 66663 2 1112222222234579
Q ss_pred eEEEEecCCC-e-EEEeeCCCcEEEEEcCCCcc-eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 475 VSYVKFLSNN-E-LASASTDSSLRLWDVKENLP-LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 475 v~~v~~~~~~-~-l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
|+++++..++ . ++++. -..|.+|.+.+..+ ...+..|+..+++.++++....+++++ +..|.+|+....++-..+
T Consensus 174 ITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred ceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 9999998772 2 33333 34789999885443 444777888889999987655455553 356999998766655555
Q ss_pred c
Q 042883 552 R 552 (597)
Q Consensus 552 ~ 552 (597)
.
T Consensus 252 ~ 252 (933)
T KOG2114|consen 252 E 252 (933)
T ss_pred c
Confidence 4
No 363
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.6e-05 Score=73.22 Aligned_cols=61 Identities=23% Similarity=0.515 Sum_probs=44.2
Q ss_pred Cccccccccccccc---cccc-ccccccHHHHHHhhcCCC---CCCCCCCCCccccccchHHHHHHHH
Q 042883 38 DTLCPICKQLMTDA---FMTA-CGHSFCYTCIFTHLRNKS---DCPCCGCHLTCKHIFPNLLLNKLLK 98 (597)
Q Consensus 38 ~l~C~IC~~~f~~P---~~l~-CgH~FC~~Cl~~~~~~~~---~CP~Cr~~~~~~~l~~n~~~~~~~~ 98 (597)
...|.||-|.|..- -.+. |||+|-..|+..|++..+ .||.|+-....++.....++..+++
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~N~~~~d~vvE 71 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVANPSTVDHVVE 71 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeeechhhhhhhhc
Confidence 46799997776643 2344 999999999999999664 4999997776666654444544444
No 364
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4e-07 Score=80.44 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=40.0
Q ss_pred cccccccccccc---cccccccccccHHHHHHhhcCCC-CCCCCCCCCcc
Q 042883 39 TLCPICKQLMTD---AFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTC 84 (597)
Q Consensus 39 l~C~IC~~~f~~---P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~ 84 (597)
..|.||++-|.. =+.|||-|.|-..|+++|+.+.. .||+||....+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 779999999983 27899999999999999999665 49999988764
No 365
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.25 E-value=6.8e-07 Score=63.96 Aligned_cols=49 Identities=29% Similarity=0.744 Sum_probs=37.9
Q ss_pred CCCccccccccccc-----------c-cccc-cccccccHHHHHHhhcCC---CCCCCCCCCCcc
Q 042883 36 DRDTLCPICKQLMT-----------D-AFMT-ACGHSFCYTCIFTHLRNK---SDCPCCGCHLTC 84 (597)
Q Consensus 36 ~~~l~C~IC~~~f~-----------~-P~~l-~CgH~FC~~Cl~~~~~~~---~~CP~Cr~~~~~ 84 (597)
.++-.|.||...|. + |+.+ .|+|.|-..||.+|+... ..||.||+....
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 34667888887777 2 4545 499999999999999864 459999998753
No 366
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00013 Score=73.70 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=103.2
Q ss_pred CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 399 YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
..+.+.+.|..+.+....+.- .+....++++| ++.++.+.+.+.. ..+++...+... ...+..+... .+ .
T Consensus 213 y~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE---~G~tl~em~a~e-~d~~vvfni~--~i--e 282 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSE---EGVTLAEMMAAE-RDWVVVFNIA--RI--E 282 (635)
T ss_pred eeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcc---cCcceeeecccc-CceEEEEchH--HH--H
Confidence 345666777776666655543 23456678888 5666555543221 112233333221 1111111100 00 0
Q ss_pred EecCCCeEEEeeCCCcEEEEEcCC-----CcceeeeeCCCCceeEEEEeecCCEEEEEe-CCCcEEEEEccCCcc-----
Q 042883 479 KFLSNNELASASTDSSLRLWDVKE-----NLPLHTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAISKP----- 547 (597)
Q Consensus 479 ~~~~~~~l~s~~~d~~v~iwd~~~-----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~----- 547 (597)
.+.+++..+.. .++.|.++|.++ ...+..+. -......+.++|||+++++++ .+++|.|+|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 22334332222 367899999998 34555554 345568899999999887665 589999999987653
Q ss_pred -------ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 548 -------AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 548 -------~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+..... .......+|+++|..+.|-.-|..|..||++
T Consensus 361 ~~~~~~vvaevev------------GlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 361 IKPRDAVVAEPEL------------GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CCccceEEEeecc------------CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 222222 3345678899999888888889999999985
No 367
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.25 E-value=4.6e-07 Score=74.52 Aligned_cols=47 Identities=34% Similarity=0.774 Sum_probs=42.9
Q ss_pred CcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 38 DTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
.+.|.||-+.|..||...|||.||..|..+-......|-+|.+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 47899999999999999999999999999888888889999987753
No 368
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.1e-07 Score=80.12 Aligned_cols=48 Identities=27% Similarity=0.601 Sum_probs=40.9
Q ss_pred CcccccccccccccccccccccccHHHHHHhh-cCCCCCCCCCCCCccc
Q 042883 38 DTLCPICKQLMTDAFMTACGHSFCYTCIFTHL-RNKSDCPCCGCHLTCK 85 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~-~~~~~CP~Cr~~~~~~ 85 (597)
.-.|+||+..-.-|+.|+|+|.||+-||+... .....||+||.++...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 34699999999999999999999999999654 4555699999998743
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.6e-05 Score=79.11 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=81.9
Q ss_pred EEEEEcCCCCEEEEeeC----CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 333 SSIEFDRDDELFASAGV----SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 333 ~~i~~~~~~~~l~t~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
+-.+|+|...+|++++- .|.|-||-- ++ .|......+-.+++++|+| ..-.|+.|-.-|.+.+|..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tG--------EPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TG--------EPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CC--------CCCcccccceehhhhccCh-HHHHHhhccccceeEEEec
Confidence 34579999999888764 588988853 33 1222222234567799999 6778888888899999998
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR 459 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~ 459 (597)
.+.+.-.....|..+|..+.|+| +|..++++..-|. +.+|...
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~-------v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGS-------VHLWRYD 131 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCce-------eEEEEee
Confidence 77666666678999999999999 8999999886665 7777654
No 370
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=2.7e-05 Score=75.31 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=96.9
Q ss_pred eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeC-----------
Q 042883 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAST----------- 491 (597)
Q Consensus 424 v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~----------- 491 (597)
=+-+.||| .|.+|+|-..-| |.+|--.+ -..+..|. |. .|.-+.|||. .+|+|-+.
T Consensus 213 etyv~wSP-~GTYL~t~Hk~G--------I~lWGG~~-f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e 280 (698)
T KOG2314|consen 213 ETYVRWSP-KGTYLVTFHKQG--------IALWGGES-FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNE 280 (698)
T ss_pred eeeEEecC-CceEEEEEeccc--------eeeecCcc-HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCC
Confidence 35689999 999999987555 78996443 23344443 54 4789999999 88887542
Q ss_pred CCcEEEEEcCCCcceeeeeCCCC--cee-EEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcc
Q 042883 492 DSSLRLWDVKENLPLHTFRGHTN--EKN-FVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYF 568 (597)
Q Consensus 492 d~~v~iwd~~~~~~~~~~~~~~~--~v~-~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 568 (597)
...+.|||+++|...+.|....+ .+. -..||.|++|+|.-.. ..|.||+...-.++...... ...
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-----------i~g 348 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK-----------ISG 348 (698)
T ss_pred CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC-----------Ccc
Confidence 25699999999998888875322 222 3689999999987765 56999997764443322221 456
Q ss_pred eEEEEEccCCCeEEE
Q 042883 569 ISAVCWKSDSPTMLT 583 (597)
Q Consensus 569 i~~v~~~~~~~~l~s 583 (597)
|....|+|.+..||-
T Consensus 349 Ir~FswsP~~~llAY 363 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAY 363 (698)
T ss_pred ccCcccCCCcceEEE
Confidence 888899999887764
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=7.6e-05 Score=72.14 Aligned_cols=151 Identities=16% Similarity=0.202 Sum_probs=107.2
Q ss_pred CCCE-EEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc-ceee
Q 042883 390 TKNL-IASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ-PLHV 467 (597)
Q Consensus 390 ~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~-~~~~ 467 (597)
+.++ +.++..-..++-.|++.|+.+....-+.. |+-+.+.| +...---.+....+|..|+.|.-||+|-.++ .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444 44555567788899999999999877665 88888887 3332111133344577788899999986444 2333
Q ss_pred eccCC----CceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 468 FNGHK----KAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 468 ~~~~~----~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
..+|. ....|.+-..+|+|++||.+|.|++||--..+....+++...+|..|..+.+|++|++.+ +..+.+.++.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 33332 345677766779999999999999999754455556788889999999999999987654 5667666654
No 372
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.16 E-value=0.00055 Score=67.40 Aligned_cols=240 Identities=12% Similarity=0.132 Sum_probs=129.3
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCC-----ccC------------CC------------------Cc-eE
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEP-----RDV------------HY------------------PM-VE 374 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~-----~~~------------~~------------------~~-~~ 374 (597)
.|+.+.|.++..-|++|...|.|.||.+....... ... .. +. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999999875441111 000 00 00 01
Q ss_pred ecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe--e------ccceeEEEEeCC----CCC---ceEEe
Q 042883 375 MPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE--E------HEKRAWSVDFSC----TEP---SMLVS 439 (597)
Q Consensus 375 ~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~----~~~---~~l~s 439 (597)
....++|++++.+ +=.++++|+.+|.+.|.|++....+..-. . ....|+++.|.. .|+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1236789999987 46799999999999999998877665521 1 223567777751 122 23444
Q ss_pred ecCCCcccCCCCeEEEEEccC--CCcc----eeeeccCCCceEEEE-ecC------------------C---CeEEEeeC
Q 042883 440 GSDDCKVGSADHHIHYYDLRN--ISQP----LHVFNGHKKAVSYVK-FLS------------------N---NELASAST 491 (597)
Q Consensus 440 ~~~d~~~~~~d~~i~i~d~~~--~~~~----~~~~~~~~~~v~~v~-~~~------------------~---~~l~s~~~ 491 (597)
|. ..|.+.+|.+-- ++.- ......+.+.|..+. ++. . .-+++...
T Consensus 161 GT-------n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 161 GT-------NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EE-------TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred Ee-------CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 44 346688887652 1111 111123445555443 211 1 11444445
Q ss_pred CCcEEEEEcCCCcceeeeeCCCCceeEEEEe-----ecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCC
Q 042883 492 DSSLRLWDVKENLPLHTFRGHTNEKNFVGLT-----VNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGS 566 (597)
Q Consensus 492 d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s-----~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 566 (597)
+..++++...+.+..+...........+.+- ..+..|++-..+|.|++|.+..-+.+......... +.
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~-------d~ 306 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL-------DS 306 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----------H
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc-------cc
Confidence 6689999998877666655222233344452 35667888889999999999998888777654211 13
Q ss_pred cceEEEEEccCCCeEEEecC
Q 042883 567 YFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 567 ~~i~~v~~~~~~~~l~s~~~ 586 (597)
..+....++++|..++-.+.
T Consensus 307 ~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SS
T ss_pred ccccccEECCCCCEEEEeCc
Confidence 34556778888887766544
No 373
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.9e-07 Score=92.12 Aligned_cols=47 Identities=30% Similarity=0.699 Sum_probs=43.3
Q ss_pred CCcccccccccccc-----cccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 37 RDTLCPICKQLMTD-----AFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 37 ~~l~C~IC~~~f~~-----P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
.+..|+||.|.+.. |..|+|||.||..||.+|.+....||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 37889999999998 899999999999999999999999999999444
No 374
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=9.1e-07 Score=78.41 Aligned_cols=45 Identities=27% Similarity=0.709 Sum_probs=41.5
Q ss_pred cccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 39 TLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 39 l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
+-|-||-.+|.+||...|||.||..|..+-++....|++|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 349999999999999999999999999998888888999988775
No 375
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.10 E-value=0.0011 Score=66.10 Aligned_cols=207 Identities=13% Similarity=0.182 Sum_probs=106.4
Q ss_pred EEEcCCCCEEEEeeCC----------C-cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 335 IEFDRDDELFASAGVS----------R-RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 335 i~~~~~~~~l~t~~~d----------~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
++.+|.|..+|....+ . .|.||+..+. ........+ +.|.++.|.. ...|++-..||.+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-------ll~~i~w~~-~~iv~~~wt~--~e~LvvV~~dG~v 103 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-------LLSSIPWDS-GRIVGMGWTD--DEELVVVQSDGTV 103 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-------EeEEEEECC-CCEEEEEECC--CCeEEEEEcCCEE
Confidence 4556666666655433 1 4888887664 111122222 7899999986 4556666679999
Q ss_pred EEEeCCCCeeeeEEe-------eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce--eee---cc-
Q 042883 404 TIWDVTTSQSVMEYE-------EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL--HVF---NG- 470 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--~~~---~~- 470 (597)
++||+.... ...+. -....+....+.. +|-.+++++ +.+++. .+...+. ..+ ..
T Consensus 104 ~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~GivvLt~~---------~~~~~v--~n~~~~~~~~~~~~~p~~ 170 (410)
T PF04841_consen 104 RVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NGIVVLTGN---------NRFYVV--NNIDEPVKLRRLPEIPGL 170 (410)
T ss_pred EEEeCCCce-eechhhhccccCcccccccccccCC-CCEEEECCC---------CeEEEE--eCccccchhhccccCCCc
Confidence 999986433 11111 0111122222221 344444432 223332 2211111 111 00
Q ss_pred ----CCC-ceEE-EEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 471 ----HKK-AVSY-VKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 471 ----~~~-~v~~-v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
+.. .... ..++.+ ...+....++.+.+.+-...+. +. ..+++..+++||+|++||.-..+|.+.|....
T Consensus 171 ~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 171 WTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred ccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 000 0000 112223 3333444445555444322211 21 24578999999999999999999999999877
Q ss_pred CCccccccccCCCCCCCcCcCCCcceEEEEEccCC
Q 042883 544 ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS 578 (597)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 578 (597)
-.+....+.... ...+..+.|.-+.
T Consensus 247 f~~~~~e~~~~~----------~~~p~~~~WCG~d 271 (410)
T PF04841_consen 247 FSEKLCEFDTDS----------KSPPKQMAWCGND 271 (410)
T ss_pred ccceeEEeecCc----------CCCCcEEEEECCC
Confidence 666665555432 3455667776543
No 376
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.10 E-value=0.00054 Score=68.79 Aligned_cols=200 Identities=7% Similarity=-0.076 Sum_probs=108.8
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCce-EecC--CCce-eEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV-EMPT--RSKL-SCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVM 415 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~~--~~~i-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 415 (597)
.+..+++++.+|.|.-+|..++............ .... ...+ ..+.. .+..++.++.+|.++-+|..+|+.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 3556777777888888888776322111000000 0000 0000 11122 24567778889999999999998887
Q ss_pred EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceE-EEEecC---CCeEEEeeC
Q 042883 416 EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVS-YVKFLS---NNELASAST 491 (597)
Q Consensus 416 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~-~v~~~~---~~~l~s~~~ 491 (597)
..........+..+. ++.+++ +.. ++.++-+|..+ ++.+-.+......+. ...-+| ++.++.++.
T Consensus 145 ~~~~~~~~~ssP~v~--~~~v~v-~~~-------~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 145 QTKVAGEALSRPVVS--DGLVLV-HTS-------NGMLQALNESD-GAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred cccCCCceecCCEEE--CCEEEE-ECC-------CCEEEEEEccC-CCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence 765332211111222 334443 332 45588899887 554443332110000 000112 256777888
Q ss_pred CCcEEEEEcCCCcceeeeeCCCC----c---eeEEEEee--cCCEEEEEeCCCcEEEEEccCCcccccccc
Q 042883 492 DSSLRLWDVKENLPLHTFRGHTN----E---KNFVGLTV--NNEYIACGSETNEVFVYHKAISKPAASHRF 553 (597)
Q Consensus 492 d~~v~iwd~~~~~~~~~~~~~~~----~---v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 553 (597)
+|.+..+|..+|+.+-....... . ...+..+| .+..+++++.+|.+..+|..+|+.+-...+
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 99999999998876655431100 0 01111122 355677777899999999999987655543
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.0014 Score=62.06 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=134.5
Q ss_pred EEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee
Q 042883 336 EFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV 414 (597)
Q Consensus 336 ~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 414 (597)
.|.++.. ++.+.-..+.|.-|+..++ ..........+.++..-. .+..|+++. ..+.+++..++..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g---------~~~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~ 98 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG---------KKRVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKI 98 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC---------ceEEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCcee
Confidence 4777666 5566667888999988755 112223334445555443 344555553 34667777655553
Q ss_pred eEEee-----ccceeEEEEeCCCCCceEEeecC----CCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC-
Q 042883 415 MEYEE-----HEKRAWSVDFSCTEPSMLVSGSD----DCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN- 484 (597)
Q Consensus 415 ~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~----d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~- 484 (597)
..+.. .....+++...| ++.+.++... +......-|.|+.+|.. +..+..+..+-...+.|+|+|++
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred EEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCC--CCEEEeecCcEEecCceEECCCCC
Confidence 33221 124577888998 6666665544 11111233556666652 55566666666667899999994
Q ss_pred eE-EEeeCCCcEEEEEcCC------Ccc-eeeeeCCCCceeEEEEeecCCEEEEEeCCC-cEEEEEccCCccccccccCC
Q 042883 485 EL-ASASTDSSLRLWDVKE------NLP-LHTFRGHTNEKNFVGLTVNNEYIACGSETN-EVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 485 ~l-~s~~~d~~v~iwd~~~------~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~ 555 (597)
.+ ++-+..+.|.-|++.. ++. ...+....+..-.++.+.+|.+.+++..+| .|.+|+.. ++.+..+.++
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP- 253 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP- 253 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC-
Confidence 44 4455568888887752 111 122223345566788999999886555554 99999988 8888888775
Q ss_pred CCCCCcCcCCCcceEEEEEc-cCCCeEEE
Q 042883 556 DADHVDDDMGSYFISAVCWK-SDSPTMLT 583 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~-~~~~~l~s 583 (597)
...+++++|- |+.+.|+.
T Consensus 254 ----------~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 254 ----------VKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ----------CCCCccceEeCCCcCEEEE
Confidence 3567888884 45555444
No 378
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.08 E-value=0.0008 Score=71.82 Aligned_cols=206 Identities=15% Similarity=0.139 Sum_probs=115.4
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccC---ccCC-----ccCCCCc--------eEec---------------
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSV---VNEP-----RDVHYPM--------VEMP--------------- 376 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~---~~~~-----~~~~~~~--------~~~~--------------- 376 (597)
-.+.|.+++|+||+++++..+..+++.+-...-. .... ....... ...+
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 4678999999999999999988888776543111 0000 0000000 0000
Q ss_pred ------CCCceeEEEEecCCCCEEEEe-----eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCc
Q 042883 377 ------TRSKLSCLSWNKYTKNLIASS-----DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCK 445 (597)
Q Consensus 377 ------~~~~i~~v~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 445 (597)
-...=+.|.|-- +|.++++. .....|+|||-+ |..-..-....+--.+++|-| .|..+++-..++.
T Consensus 188 ~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~s 264 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTS 264 (1265)
T ss_pred cccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCC
Confidence 011223488986 67788873 223789999966 444333333334456799999 7888887665543
Q ss_pred ccCCCCeEEEEEccCC--CcceeeeccCCCceEEEEecCC-CeEEE---eeCCCcEEEEEcCCCccee--eeeCCCCcee
Q 042883 446 VGSADHHIHYYDLRNI--SQPLHVFNGHKKAVSYVKFLSN-NELAS---ASTDSSLRLWDVKENLPLH--TFRGHTNEKN 517 (597)
Q Consensus 446 ~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~-~~l~s---~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~ 517 (597)
|+.|.+|.-+.- +.-...+......+..++|+.+ ..|++ ......|++|-+.+..... .+......
T Consensus 265 ----d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-- 338 (1265)
T KOG1920|consen 265 ----DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-- 338 (1265)
T ss_pred ----CCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc--
Confidence 567899876531 1111112223344899999998 55555 3444559999987743222 22211111
Q ss_pred EEEEeecC-CEEEEEeCCCcEEEEEc
Q 042883 518 FVGLTVNN-EYIACGSETNEVFVYHK 542 (597)
Q Consensus 518 ~v~~s~~g-~~l~~~~~d~~i~iwd~ 542 (597)
-+.|+|-. ..+.+-..+|...++|+
T Consensus 339 ~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 339 LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cccccCCCceeEEEEecCCcEEEEEE
Confidence 16677642 22333335555555543
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=5.6e-05 Score=76.85 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=79.0
Q ss_pred EEEEecCCCCEEEEeeC----CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEc
Q 042883 383 CLSWNKYTKNLIASSDY----DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDL 458 (597)
Q Consensus 383 ~v~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~ 458 (597)
-..|+| ...++++++. .|+|.||- ++|++..... ..-.+++++|+| ..-.++.|-.- |.+.+|..
T Consensus 20 i~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~-------g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEM-------GVSDVQKT 88 (1416)
T ss_pred ccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhcccc-------ceeEEEec
Confidence 356888 6777777753 57899984 6776554432 233467799999 77777777644 44899988
Q ss_pred cCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcC
Q 042883 459 RNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVK 501 (597)
Q Consensus 459 ~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~ 501 (597)
.. ...-.....|..+|..+.|+++ +.++++..-|.|.+|...
T Consensus 89 ~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 75 3334444569999999999999 889999999999999765
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.06 E-value=0.00048 Score=68.76 Aligned_cols=219 Identities=10% Similarity=0.104 Sum_probs=113.0
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...+..+.++|+|+.+++++ +|...||..... .. ...+.-....|.+ .+.+|+-..++.|.|+.-
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~--------r~----k~~G~g~~~vw~~--~n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW--------RN----KAFGSGLSFVWSS--RNRYAVLESSSTIKIYKN 96 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT--------EE----EEEEE-SEEEE-T--SSEEEEE-TTS-EEEEET
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC--------cc----cccCceeEEEEec--CccEEEEECCCeEEEEEc
Confidence 34577999999999998854 788888873322 11 1123445678886 455677666888999743
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEE
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA 487 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~ 487 (597)
-.......+... ..+..|- .|.+|+..+. +.|.+||..+ ++.+..+... +|..|.|+++ .+++
T Consensus 97 ~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~--------~~i~~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 97 FKNEVVKSIKLP-FSVEKIF----GGNLLGVKSS--------DFICFYDWET-GKLIRRIDVS--AVKYVIWSDDGELVA 160 (443)
T ss_dssp TEE-TT-----S-S-EEEEE-----SSSEEEEET--------TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEE
T ss_pred CccccceEEcCC-cccceEE----cCcEEEEECC--------CCEEEEEhhH-cceeeEEecC--CCcEEEEECCCCEEE
Confidence 233332333221 1233333 2566666653 3499999998 7777777633 4899999999 5555
Q ss_pred EeeCCCcEEEEEcCCC-----------cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 488 SASTDSSLRLWDVKEN-----------LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~-----------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
..+ +..+.|++.... ..+..+......|.+..|..+ .++-.+.. +|.. +-.|.......+
T Consensus 161 l~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l--- 231 (443)
T PF04053_consen 161 LVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL--- 231 (443)
T ss_dssp EE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE----
T ss_pred EEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc---
Confidence 554 557888875422 023333322556788888655 44444333 6665 333333222222
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..++.=+.+.+....++....|+.|..+.++
T Consensus 232 ---------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 232 ---------DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ---------SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ---------CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 3456667777777788888999999888765
No 381
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.05 E-value=0.0015 Score=59.66 Aligned_cols=199 Identities=11% Similarity=0.136 Sum_probs=103.8
Q ss_pred cccCCCCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+.+-...+..++|+|+.. ++++....+.|..++..+. ..........+..-+|++.. ++.++++.-.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-------vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-------VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQR 87 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-------EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCc
Confidence 3445556699999999755 5556666777777776432 11112223345677888875 4555555556889
Q ss_pred EEEEeCCCCe------eeeEEe-----eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC--CCcceee--
Q 042883 403 VTIWDVTTSQ------SVMEYE-----EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN--ISQPLHV-- 467 (597)
Q Consensus 403 i~iwd~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~--~~~~~~~-- 467 (597)
+.++++.... .+..+. .++..+-.++|+|.++.++++--. .-..+|.++. ....+..
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--------~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--------KPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--------SSEEEEEEESTT-SS--EEEE
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--------CChhhEEEccccCccceeecc
Confidence 9999884321 112221 245678999999955666665322 1244555542 1111111
Q ss_pred ------eccCCCceEEEEecCC-C-eEEEeeCCCcEEEEEcCCCcceeeeeCCC---------CceeEEEEeecCCEEEE
Q 042883 468 ------FNGHKKAVSYVKFLSN-N-ELASASTDSSLRLWDVKENLPLHTFRGHT---------NEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 468 ------~~~~~~~v~~v~~~~~-~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~v~~s~~g~~l~~ 530 (597)
.......+.+++++|. + .++.+..+..|.++| ..|+++..+.-.. ...-.|+|+++|+++++
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 1123356889999998 4 466677788899999 5677766554221 24578999999976655
Q ss_pred EeCCCcEEEE
Q 042883 531 GSETNEVFVY 540 (597)
Q Consensus 531 ~~~d~~i~iw 540 (597)
+ .-+..++|
T Consensus 239 s-EpNlfy~f 247 (248)
T PF06977_consen 239 S-EPNLFYRF 247 (248)
T ss_dssp E-TTTEEEEE
T ss_pred c-CCceEEEe
Confidence 5 55555554
No 382
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=9e-07 Score=55.71 Aligned_cols=45 Identities=29% Similarity=0.792 Sum_probs=38.9
Q ss_pred ccccccccccccccccccccc-ccHHHHHHhhcC-CCCCCCCCCCCc
Q 042883 39 TLCPICKQLMTDAFMTACGHS-FCYTCIFTHLRN-KSDCPCCGCHLT 83 (597)
Q Consensus 39 l~C~IC~~~f~~P~~l~CgH~-FC~~Cl~~~~~~-~~~CP~Cr~~~~ 83 (597)
-.|.||.|--.|.|.-.|||. .|..|-.+.|.+ ...||.||++..
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 579999999999999999995 599999999984 456999998754
No 383
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.03 E-value=4.6e-06 Score=73.53 Aligned_cols=57 Identities=32% Similarity=0.702 Sum_probs=43.5
Q ss_pred ccccccccccccccccc-ccccccHHHHHHhhc-CCCCCCCCCCCC-ccccccchHHHHH
Q 042883 39 TLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLR-NKSDCPCCGCHL-TCKHIFPNLLLNK 95 (597)
Q Consensus 39 l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~-~~~~CP~Cr~~~-~~~~l~~n~~~~~ 95 (597)
|-||+|..++++|+-.| |||+||.+||+..+. .-+.||.|...- -++.|.+..-...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~ 334 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKL 334 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHH
Confidence 89999999999998776 999999999997665 446699997644 3344555443333
No 384
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.02 E-value=4.5e-06 Score=81.73 Aligned_cols=58 Identities=38% Similarity=0.912 Sum_probs=50.9
Q ss_pred CcCCCCCccccccccccccccc-ccccccccHHHHHHhhcCCCCCCCCCCCCccccccc
Q 042883 32 DTEVDRDTLCPICKQLMTDAFM-TACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~-l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~ 89 (597)
...+++++.|+||...+.||+. ..|||.||..|+..+....+.||.|+......+..+
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 3448889999999999999998 589999999999999988888999999887766543
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.93 E-value=0.011 Score=60.00 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=124.1
Q ss_pred cEEEEEEcCCCCEEEEee-CC----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC-----
Q 042883 331 IISSIEFDRDDELFASAG-VS----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD----- 400 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~-~d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d----- 400 (597)
.+....++|+|+++|.+- .. ..|+++|+.++ ......-.......+.|.+++..++++...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------EEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------cCcCCcccccccceEEEeCCCCEEEEEEeCcccccc
Confidence 444688999999988653 22 35999999887 1111110111122399999444455554332
Q ss_pred -----CcEEEEeCCCCeee--eEEeeccce--eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC---Ccceeee
Q 042883 401 -----GIVTIWDVTTSQSV--MEYEEHEKR--AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI---SQPLHVF 468 (597)
Q Consensus 401 -----g~i~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~---~~~~~~~ 468 (597)
..|+.|.+.++... ..+...... ...+..++ ++.+++.....+. ....+++.|+... ......+
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~---~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGT---SESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSS---SEEEEEEEECCCTTTSS-SEEEE
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccc---cCCeEEEEeccccCCCcCCcEEE
Confidence 23788888765432 334443333 56788888 6666555443332 1266899998863 2233333
Q ss_pred ccCCCce-EEEEecCCCeEEEe---eCCCcEEEEEcCCCcc---eeeeeCCCCceeEEEEeecCCEEEEE-eCCC--cEE
Q 042883 469 NGHKKAV-SYVKFLSNNELASA---STDSSLRLWDVKENLP---LHTFRGHTNEKNFVGLTVNNEYIACG-SETN--EVF 538 (597)
Q Consensus 469 ~~~~~~v-~~v~~~~~~~l~s~---~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~--~i~ 538 (597)
......+ ..+....+.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+.. ..++ .|+
T Consensus 273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 3333333 44444433333333 2345677778776553 22445555544444455566665554 3343 688
Q ss_pred EEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE-E-ec--CcccEEEEEec
Q 042883 539 VYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML-T-AN--RKGAIKVLVLA 596 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~-s-~~--~dg~v~iwd~~ 596 (597)
+|++..+.......... .+.|..+...++++.+. + .| .-+++..||+.
T Consensus 353 v~~~~~~~~~~~~~~p~----------~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPE----------AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp EEETT-TEEEEEEESSS----------SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred EEECCCCcEEeeecCCc----------ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 99988344443333322 44466666555555432 2 22 23455555543
No 386
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.00032 Score=70.03 Aligned_cols=145 Identities=12% Similarity=0.082 Sum_probs=83.8
Q ss_pred EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEE
Q 042883 417 YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLR 496 (597)
Q Consensus 417 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~ 496 (597)
+......+..+.++| ++++++.++ +|.-.||.... .. -.. .+.-...+|.+.+.+++-...++|.
T Consensus 28 lg~~~~~p~~ls~np-ngr~v~V~g--------~geY~iyt~~~-~r-~k~----~G~g~~~vw~~~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNP-NGRFVLVCG--------DGEYEIYTALA-WR-NKA----FGSGLSFVWSSRNRYAVLESSSTIK 92 (443)
T ss_dssp EEE-SS--SEEEE-T-TSSEEEEEE--------TTEEEEEETTT-TE-EEE----EEE-SEEEE-TSSEEEEE-TTS-EE
T ss_pred CCCCCcCCeeEEECC-CCCEEEEEc--------CCEEEEEEccC-Cc-ccc----cCceeEEEEecCccEEEEECCCeEE
Confidence 334455688999999 777777665 45577887332 11 111 2344577888888899988899999
Q ss_pred EEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 497 LWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 497 iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
|+.--+......+... ..+..+-. |.+|...+.+ .|.+||+.+++.+..+.. .+|..|.|++
T Consensus 93 I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-------------~~vk~V~Ws~ 154 (443)
T PF04053_consen 93 IYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-------------SAVKYVIWSD 154 (443)
T ss_dssp EEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS--------------E-EEEEE-T
T ss_pred EEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-------------CCCcEEEEEC
Confidence 9743334443444322 22344422 8877776554 899999999999988873 3489999999
Q ss_pred CCCeEEEecCcccEEEEEe
Q 042883 577 DSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 577 ~~~~l~s~~~dg~v~iwd~ 595 (597)
+|.+++..+.+ .+.|++.
T Consensus 155 ~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKY 172 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE
T ss_pred CCCEEEEEeCC-eEEEEEe
Confidence 99999988766 5777764
No 387
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=9.3e-06 Score=71.26 Aligned_cols=48 Identities=38% Similarity=0.845 Sum_probs=39.8
Q ss_pred CCCcccccccccccccccc-cccccccHHHHHHhhc--CCCCCCCCCCCCc
Q 042883 36 DRDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLR--NKSDCPCCGCHLT 83 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~--~~~~CP~Cr~~~~ 83 (597)
...-+||+|.+.-..|.++ +|||.||+-||..-.. ....||.|.....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3467899999999999665 5999999999986554 4467999998875
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.89 E-value=0.00095 Score=69.45 Aligned_cols=223 Identities=14% Similarity=0.118 Sum_probs=120.3
Q ss_pred CCCEEEEeeCCC------cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC------CcEEEEe
Q 042883 340 DDELFASAGVSR------RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD------GIVTIWD 407 (597)
Q Consensus 340 ~~~~l~t~~~d~------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d------g~i~iwd 407 (597)
.+.+++.||.++ .|..||..+... ...........-.+++.. ++.++++|+.| ..+..||
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w------~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEW------SSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcE------eecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEec
Confidence 456677777763 577787766511 111111223334556666 46888899988 3577888
Q ss_pred CCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-eeeeccCCCceEEEEecCCC
Q 042883 408 VTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LHVFNGHKKAVSYVKFLSNN 484 (597)
Q Consensus 408 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~ 484 (597)
..+++.... +...... .+++.. ++.+.+.||.||.. .-.+|..||..+.... +..+.. ...-.+++.....
T Consensus 356 ~~~~~W~~~a~M~~~R~~-~~v~~l--~g~iYavGG~dg~~--~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 356 PRTNQWTPVAPMNTKRSD-FGVAVL--DGKLYAVGGFDGEK--SLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGK 429 (571)
T ss_pred CCCCceeccCCccCcccc-ceeEEE--CCEEEEEecccccc--ccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCE
Confidence 887765431 2111111 223332 78899999988763 3346889998863221 111211 1111223323334
Q ss_pred eEEEeeCCC------cEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEEeCCCc-----EEEEEccCCcccccc
Q 042883 485 ELASASTDS------SLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACGSETNE-----VFVYHKAISKPAASH 551 (597)
Q Consensus 485 ~l~s~~~d~------~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-----i~iwd~~~~~~~~~~ 551 (597)
.+++||.++ ++..||..++.... .+........ .-.-++.++++||.|+. |..||..+.+....-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 567777554 47888887754322 2221111111 22337788888888763 777888876655442
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCccc
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGA 589 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~ 589 (597)
.... ....+..+.+ ++...++|+.||.
T Consensus 508 ~m~~---------~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 508 PMTS---------PRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred cCcc---------ccccccEEEE--CCEEEEEecccCc
Confidence 2211 0222222333 4677788888775
No 389
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0096 Score=59.15 Aligned_cols=239 Identities=12% Similarity=0.110 Sum_probs=145.4
Q ss_pred cEEEEEEcCCCCEEEEee-CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 331 IISSIEFDRDDELFASAG-VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
....+.+.+++..+.... ....+...+.... .. ..... ........++.++.+...++....++.|.+.|..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n--~~----~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~ 104 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN--TV----TQSLS-VGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA 104 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc--ee----eeecc-CCCccccceeeCCCCCeEEEecCCCCeEEEEcCc
Confidence 455677888875444333 2223444443311 00 00000 0114455778888555577777777999999987
Q ss_pred CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE-E
Q 042883 410 TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL-A 487 (597)
Q Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l-~ 487 (597)
+........- ......++++|.++.+.++-... .++.+.+.|..+ ...+........+ ..++++|+ +.+ +
T Consensus 105 ~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~-----~~~~vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv 176 (381)
T COG3391 105 TNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGN-----GNNTVSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYV 176 (381)
T ss_pred ccceeeEeee-ccCCceEEECCCCCEEEEEeccc-----CCceEEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEE
Confidence 7666665532 23678899999444555544421 246689999887 4555554433334 88999999 534 4
Q ss_pred EeeCCCcEEEEEcCCCccee-e---eeCCCCceeEEEEeecCCEEEEEeCC---CcEEEEEccCCccccc-cccCCCCCC
Q 042883 488 SASTDSSLRLWDVKENLPLH-T---FRGHTNEKNFVGLTVNNEYIACGSET---NEVFVYHKAISKPAAS-HRFGSDADH 559 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~-~---~~~~~~~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~-~~~~~~~~~ 559 (597)
+-..++.|.++|........ . ...-......+.++|+|.++.+.... +.+...|..++..... ...+.
T Consensus 177 ~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~---- 252 (381)
T COG3391 177 TNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS---- 252 (381)
T ss_pred EecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc----
Confidence 44578999999977655442 1 01112234679999999976655443 5899999888777665 22211
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEe
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVL 595 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~ 595 (597)
. ....+..+|+|.++.+.. ..+.+.+-|.
T Consensus 253 ------~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 253 ------G-APRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ------C-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 2 456788999998887763 3356665553
No 390
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.0019 Score=65.09 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=98.1
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...|.=-+++..+++++.|+..|.|++|+-.++..... ...+..+.+..+..++ +..++|.|+..|.|.++-+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~------~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL------KNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc------cccCccceEEEEEecc-hhHhhhhhcCCceEEeehh
Confidence 34455556777899999999999999999887621111 1111344555666776 6788899999999999987
Q ss_pred CCCeee-----eEE-eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC---CcceeeeccCCCceEEEE
Q 042883 409 TTSQSV-----MEY-EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI---SQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 409 ~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~v~ 479 (597)
..+... ... ..|...|+++.|++ ++..+.+|...|+ |..-.+... ......+....+.|..+.
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gk-------v~~~~L~s~~~~~~~~q~il~~ds~IVQlD 177 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGK-------VVLTELDSRQAFLSKSQEILSEDSEIVQLD 177 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCce-------EEEEEechhhhhccccceeeccCcceEEee
Confidence 654321 111 23678999999999 8888999886665 666655540 111222223445677776
Q ss_pred ecCCCeEEEeeCCCcEEEEEcCC
Q 042883 480 FLSNNELASASTDSSLRLWDVKE 502 (597)
Q Consensus 480 ~~~~~~l~s~~~d~~v~iwd~~~ 502 (597)
+.. ++|++++.-. -.++++..
T Consensus 178 ~~q-~~LLVStl~r-~~Lc~tE~ 198 (726)
T KOG3621|consen 178 YLQ-SYLLVSTLTR-CILCQTEA 198 (726)
T ss_pred ccc-ceehHhhhhh-hheeecch
Confidence 544 3333333332 23455543
No 391
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0001 Score=73.75 Aligned_cols=117 Identities=15% Similarity=0.231 Sum_probs=85.1
Q ss_pred ceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeee--CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccc
Q 042883 474 AVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR--GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAS 550 (597)
Q Consensus 474 ~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 550 (597)
.|.--+++.. .+++.|+.-|.+++|+-..+. ...++ +..+.+...+++++..++|+|+..|.|.+|-+..+.+...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3333344444 789999999999999966554 33333 2445556678899999999999999999999877544332
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..... .+..|...|++++|++++..+++|...|+|..-.++
T Consensus 114 ~~~t~-----~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 114 DYVTP-----CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred eeecc-----ccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 22211 112368899999999999999999999999876664
No 392
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=0.012 Score=52.20 Aligned_cols=142 Identities=12% Similarity=0.040 Sum_probs=85.8
Q ss_pred CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeec
Q 042883 341 DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEH 420 (597)
Q Consensus 341 ~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 420 (597)
..+++.|+..+.+.-.|..+++.. ...--...|-+-+.- -+++++.|...|.+++.+..+|.....+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~--------We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI--------WEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE--------eehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 356777888888888888776222 111112333333333 2678999999999999999999877666432
Q ss_pred cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEE
Q 042883 421 EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWD 499 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd 499 (597)
..--..-...+ ++.++..|+.|+. .+..|.++ ...+...+...+...+=+..|. +.|..+...|.|.--.
T Consensus 93 ~~vk~~a~~d~-~~glIycgshd~~-------~yalD~~~-~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 93 ETVKVRAQCDF-DGGLIYCGSHDGN-------FYALDPKT-YGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred hhhccceEEcC-CCceEEEecCCCc-------EEEecccc-cceEEecccCCceeccceecCCCceEEEEeccceEEEEc
Confidence 22111223344 7788888886555 89999987 4444444433333333444553 5566666666655444
Q ss_pred cC
Q 042883 500 VK 501 (597)
Q Consensus 500 ~~ 501 (597)
..
T Consensus 164 ~~ 165 (354)
T KOG4649|consen 164 KN 165 (354)
T ss_pred cC
Confidence 43
No 393
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.80 E-value=0.012 Score=57.32 Aligned_cols=180 Identities=16% Similarity=0.175 Sum_probs=103.5
Q ss_pred CCEEEEeeC----------CCcEEEEeCCCC----eeeeEE--eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 391 KNLIASSDY----------DGIVTIWDVTTS----QSVMEY--EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 391 ~~~l~s~~~----------dg~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
..+|++|.. .|.|.+|++... ..+..+ ....++|++++-. ++.++++.+ +.|.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g---------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVG---------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEET---------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEeec---------CEEE
Confidence 457776643 288999999874 122221 2457889998876 455555443 4599
Q ss_pred EEEccCCCcceee-eccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCC-Ccceeeee--CCCCceeEEEEeecCCEEEE
Q 042883 455 YYDLRNISQPLHV-FNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE-NLPLHTFR--GHTNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 455 i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~--~~~~~v~~v~~s~~g~~l~~ 530 (597)
+|++......... +......+.++.... +++++|.....+.++.... +..+..+. .....++++.|-+++..+++
T Consensus 111 v~~l~~~~~l~~~~~~~~~~~i~sl~~~~-~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFYDSPFYITSLSVFK-NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp EEEEETTSSEEEEEEE-BSSSEEEEEEET-TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred EEEccCcccchhhheecceEEEEEEeccc-cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 9999873312222 111233667776553 5888898888888875443 22233322 23446788888877778999
Q ss_pred EeCCCcEEEEEccCC-------c--cccccccCCCCCCCcCcCCCcceEEE---EEccC--CC------eEEEecCcccE
Q 042883 531 GSETNEVFVYHKAIS-------K--PAASHRFGSDADHVDDDMGSYFISAV---CWKSD--SP------TMLTANRKGAI 590 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~-------~--~~~~~~~~~~~~~~~~~~h~~~i~~v---~~~~~--~~------~l~s~~~dg~v 590 (597)
+..+|.|.++..... . ......+ +....|+++ .+.|. +. .++-++.+|.|
T Consensus 190 ~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f----------~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 190 GDKDGNLFVLRYNPEIPNSRDGDPKLERISSF----------HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE----------E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred EcCCCeEEEEEECCCCcccccccccceeEEEE----------ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence 999999999987631 1 1111111 125567777 55552 22 37778888888
Q ss_pred EE
Q 042883 591 KV 592 (597)
Q Consensus 591 ~i 592 (597)
.+
T Consensus 260 g~ 261 (321)
T PF03178_consen 260 GV 261 (321)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 394
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.01 Score=59.04 Aligned_cols=206 Identities=12% Similarity=0.104 Sum_probs=130.7
Q ss_pred cEEEEEEcCCCCE-EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee--CCCcEEEEe
Q 042883 331 IISSIEFDRDDEL-FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD--YDGIVTIWD 407 (597)
Q Consensus 331 ~v~~i~~~~~~~~-l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~--~dg~i~iwd 407 (597)
....++.++.+.. .++...++.|.+.|..+. .......-......++++|+++...++-. .++.+.+.|
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--------~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--------TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCccc--------ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 3446778887774 445555688999996554 11222222226678999994444444444 368999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCc-eEEeecCCCcccCCCCeEEEEEccCCCccee-e---eccCCCceEEEEecC
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQPLH-V---FNGHKKAVSYVKFLS 482 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~-~---~~~~~~~v~~v~~~~ 482 (597)
..++........-..+ ..+++.| ++. .+++... ++.|.++|... ..... . ...-......+.++|
T Consensus 147 ~~t~~~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~-------~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 147 AATNKVTATIPVGNTP-TGVAVDP-DGNKVYVTNSD-------DNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred CCCCeEEEEEecCCCc-ceEEECC-CCCeEEEEecC-------CCeEEEEeCCC-cceeccccccccccCCCCceEEECC
Confidence 8888887775433334 8999999 555 4444433 45599999765 22221 0 011223456788899
Q ss_pred C-CeEEEe-eCC--CcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCEEEEEeC-CCcEEEEEccCCccccccccC
Q 042883 483 N-NELASA-STD--SSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEYIACGSE-TNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 483 ~-~~l~s~-~~d--~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~ 554 (597)
+ .++.+. ..+ +.+...|..++..... ..........+.++|+|.++.+... .+.+.+.|..+.........+
T Consensus 217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 9 434333 332 6899999988776665 2211114567899999998888744 488999998887766655443
No 395
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.77 E-value=0.0033 Score=61.17 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=107.0
Q ss_pred CcEEEEeCCCCeeeeEEee-ccceeE---EEEeCCC---CCceEEeecCCCc--cc-CCCCeEEEEEccCC---Ccceee
Q 042883 401 GIVTIWDVTTSQSVMEYEE-HEKRAW---SVDFSCT---EPSMLVSGSDDCK--VG-SADHHIHYYDLRNI---SQPLHV 467 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~-~~~~v~---~~~~~~~---~~~~l~s~~~d~~--~~-~~d~~i~i~d~~~~---~~~~~~ 467 (597)
+.|++.|..+...+..+.- ....++ .+.+... ...+++.|..-.. -. ...|.|.+|++... ...+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888877776655542 222333 3444321 1466666542110 01 12288999999872 112222
Q ss_pred e--ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC-
Q 042883 468 F--NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI- 544 (597)
Q Consensus 468 ~--~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~- 544 (597)
+ ....++|++++-- .+.|+++. ++.|.+|++...+.+.....+...+..++....+++|++|+....|.++....
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT
T ss_pred EEEEeecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc
Confidence 2 2356889998866 44544444 47999999988772322222233334455555688999999888888876554
Q ss_pred CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 545 SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+..+..+... .....++++.|-+++..++.++.+|.|.++..+
T Consensus 160 ~~~l~~va~d---------~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 160 NNKLILVARD---------YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TE-EEEEEEE---------SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCEEEEEEec---------CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2212222211 125678999998776789999999999999875
No 396
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.76 E-value=0.025 Score=53.69 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=121.1
Q ss_pred CCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE-
Q 042883 339 RDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY- 417 (597)
Q Consensus 339 ~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 417 (597)
..++.|+.|+.+| +.+|+.... .......+...|..+...| .-+.+++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~--------~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP--------SKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC--------ccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccc
Confidence 3578899999888 899998322 1112222334499999988 445555444 599999998654333210
Q ss_pred -------------eeccceeEEEE--eCCCCCceEEeecCCCcccCCCCeEEEEEccCCC----cceeeeccCCCceEEE
Q 042883 418 -------------EEHEKRAWSVD--FSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS----QPLHVFNGHKKAVSYV 478 (597)
Q Consensus 418 -------------~~~~~~v~~~~--~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~v 478 (597)
......+...+ -...+...++.+- ...|.+|...... ...+.+. -...+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~--------kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i 144 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV--------KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSI 144 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEE--------CCEEEEEEEECCcccccceeEEEE-cCCCcEEE
Confidence 11223344444 1122344555443 2358888876521 3344444 34778999
Q ss_pred EecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCC------------CceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 479 KFLSNNELASASTDSSLRLWDVKENLPLHTFRGHT------------NEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 479 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~------------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
+|. .+.++.|..+ ...+.|+.++.....+.... .++..+. -+++.+|++. |..-.+.| ..|+
T Consensus 145 ~~~-~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~-~~G~ 218 (275)
T PF00780_consen 145 AFL-GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVN-KNGE 218 (275)
T ss_pred EEe-CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEc-CCCC
Confidence 998 4456666544 47889998765543332111 1222222 2345666643 33333334 3444
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+........ ...+.++++. .+||++.+.++ |.||++.+
T Consensus 219 ~~r~~~i~W----------~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~ 256 (275)
T PF00780_consen 219 PSRKSTIQW----------SSAPQSVAYS--SPYLIAFSSNS-IEVRSLET 256 (275)
T ss_pred cCcccEEEc----------CCchhEEEEE--CCEEEEECCCE-EEEEECcC
Confidence 433111111 3456677774 56888877655 99999853
No 397
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.75 E-value=0.01 Score=55.89 Aligned_cols=239 Identities=12% Similarity=0.136 Sum_probs=130.9
Q ss_pred EEEEEcCCCCEEEEeeC----------CCcEEEEecccCccCC--ccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-
Q 042883 333 SSIEFDRDDELFASAGV----------SRRIKIFEFSSVVNEP--RDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY- 399 (597)
Q Consensus 333 ~~i~~~~~~~~l~t~~~----------d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~- 399 (597)
-.+..+|+++.++++.. .-.|.+||..+..-.. .....+.... ......++++. +++++++...
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~-dgk~~~V~N~T 115 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSA-DGKFLYVQNFT 115 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-T-TSSEEEEEEES
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--cccccceEEcc-CCcEEEEEccC
Confidence 34678999998887532 3469999998761110 0000000000 01223345666 5666666533
Q ss_pred -CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee----eccCCCc
Q 042883 400 -DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV----FNGHKKA 474 (597)
Q Consensus 400 -dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~ 474 (597)
..+|.|.|+..++.+..+.- . .++.+--. .+.-|.+-+. ||.+.-..+...++.... |..-..+
T Consensus 116 Pa~SVtVVDl~~~kvv~ei~~-P-GC~~iyP~--~~~~F~~lC~-------DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp 184 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGEIDT-P-GCWLIYPS--GNRGFSMLCG-------DGSLLTVTLDADGKEAQKSTKVFDPDDDP 184 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEG-T-SEEEEEEE--ETTEEEEEET-------TSCEEEEEETSTSSEEEEEEEESSTTTS-
T ss_pred CCCeEEEEECCCCceeeeecC-C-CEEEEEec--CCCceEEEec-------CCceEEEEECCCCCEeEeeccccCCCCcc
Confidence 34688888888888777642 2 23333222 3233444443 444777777755554422 1111122
Q ss_pred eE-EEEecCC-CeEEEeeCCCcEEEEEcCCCccee--eeeC----------CCCceeEEEEeecCCEEEEE---eCCC--
Q 042883 475 VS-YVKFLSN-NELASASTDSSLRLWDVKENLPLH--TFRG----------HTNEKNFVGLTVNNEYIACG---SETN-- 535 (597)
Q Consensus 475 v~-~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~--~~~~----------~~~~v~~v~~s~~g~~l~~~---~~d~-- 535 (597)
+. .-++... +.++-.+..|.|+-.|+....... .+.. -.+.-.-+++++..+.|++- +.+|
T Consensus 185 ~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 185 LFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred cccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 21 2233333 566667888998888887644221 1110 01222347777655444332 1122
Q ss_pred -----cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEE-ecCcccEEEEEecC
Q 042883 536 -----EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLT-ANRKGAIKVLVLAA 597 (597)
Q Consensus 536 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s-~~~dg~v~iwd~~~ 597 (597)
.|.+||+.+++.+..+.. ..++.+|+.+.+.. +|++ ...++.+.|||..+
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPL------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEE------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred cCCceEEEEEECCCCeEEEEEeC------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 488899999999998886 45688999988664 6655 45689999999653
No 398
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.002 Score=65.48 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=65.0
Q ss_pred CeEEEEEccC----CCcceeeeccCCCceEEEEecCC-Ce-EEEeeCCCcEEEEEcCCCcc------------eeeeeCC
Q 042883 451 HHIHYYDLRN----ISQPLHVFNGHKKAVSYVKFLSN-NE-LASASTDSSLRLWDVKENLP------------LHTFRGH 512 (597)
Q Consensus 451 ~~i~i~d~~~----~~~~~~~~~~~~~~v~~v~~~~~-~~-l~s~~~d~~v~iwd~~~~~~------------~~~~~~~ 512 (597)
+.|.++|.++ ....+..+. -......+.++|| .+ ++++..+.+|.|+|+.+.+. +.+..-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4589999886 223333333 4556789999999 44 45566789999999987542 233332
Q ss_pred CCceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 513 TNEKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 513 ~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
.......+|+++|..+.+--.|..|..||+..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22345688999998888888899999999876
No 399
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.7e-05 Score=71.59 Aligned_cols=72 Identities=22% Similarity=0.533 Sum_probs=53.7
Q ss_pred CCCCCCcc-cccccccCcCCCCCccccccccccccccccc-ccccccHHHHHHhhcCCCCCCCCCCCCcccccc
Q 042883 17 SEPPFSLR-TAVEVDRDTEVDRDTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIF 88 (597)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~ 88 (597)
.+|+|.|| ..+.++.....-+.-.||||+..-.+|-.+. -|-.||..|+..|......||+-..+....++.
T Consensus 278 ~~p~PpPPh~~~~se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 278 DPPIPPPPHKQYNSESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLI 351 (357)
T ss_pred CCCCCcCChhhcccccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHH
Confidence 34444444 3333333333344467999999999997776 799999999999999999999998888776654
No 400
>PHA02713 hypothetical protein; Provisional
Probab=97.68 E-value=0.003 Score=65.99 Aligned_cols=188 Identities=11% Similarity=0.076 Sum_probs=95.6
Q ss_pred CCCEEEEeeCC------CcEEEEeCCCCeeee--EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC
Q 042883 390 TKNLIASSDYD------GIVTIWDVTTSQSVM--EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI 461 (597)
Q Consensus 390 ~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~ 461 (597)
++.+++.||.+ ..+..||..++.... .+....... +++.. ++.+.+.||.++.. .-..+..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~--~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTN--VERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE--CCEEEEECCcCCCC--CCceEEEEECCCC
Confidence 56777888754 347788987765422 111111122 22322 67888888876531 2346899998862
Q ss_pred Ccc-eeeeccCCCceEEEEecCCCeEEEeeCCC-----------------------cEEEEEcCCCcc--eeeeeCCCCc
Q 042883 462 SQP-LHVFNGHKKAVSYVKFLSNNELASASTDS-----------------------SLRLWDVKENLP--LHTFRGHTNE 515 (597)
Q Consensus 462 ~~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~d~-----------------------~v~iwd~~~~~~--~~~~~~~~~~ 515 (597)
... +..+....... +++...+..++.||.++ .+..||..+.+- +..+.....
T Consensus 378 ~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~- 455 (557)
T PHA02713 378 KWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI- 455 (557)
T ss_pred eEEECCCCCcccccc-cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-
Confidence 211 11111111111 22222335566676542 477788776432 222211111
Q ss_pred eeEEEEeecCCEEEEEeCC------CcEEEEEccC-CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcc
Q 042883 516 KNFVGLTVNNEYIACGSET------NEVFVYHKAI-SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKG 588 (597)
Q Consensus 516 v~~v~~s~~g~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg 588 (597)
..-...-+|.+++.||.+ ..+..||..+ .+-......+. .......+++ +|.+.++||.||
T Consensus 456 -~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~---------~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 456 -RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES---------RLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred -cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc---------ccccceeEEE--CCEEEEEeeecc
Confidence 111223367777777754 2467899876 44332222211 0222233333 678888899888
Q ss_pred --cEEEEEec
Q 042883 589 --AIKVLVLA 596 (597)
Q Consensus 589 --~v~iwd~~ 596 (597)
.+-.||+.
T Consensus 524 ~~~~e~yd~~ 533 (557)
T PHA02713 524 YMLQDTFNVY 533 (557)
T ss_pred eeehhhcCcc
Confidence 66677664
No 401
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.68 E-value=0.00066 Score=59.51 Aligned_cols=49 Identities=27% Similarity=0.667 Sum_probs=32.7
Q ss_pred cccccccccc-ccccc-cccccccHHHHHHhhcCCCCCCCCCCCCccccccch
Q 042883 40 LCPICKQLMT-DAFMT-ACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 40 ~C~IC~~~f~-~P~~l-~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n 90 (597)
.|--|...-. +|.-| .|+|.||..|... .....||.|++.+....+-.|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~--~~~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKA--SSPDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhccc--CCccccccccceeeeeecccc
Confidence 3665554443 56545 5999999999853 222369999999776555444
No 402
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.0035 Score=62.47 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=108.6
Q ss_pred CCCcEEEEEEcCCCCEEEEee---CC-CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc-
Q 042883 328 AANIISSIEFDRDDELFASAG---VS-RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI- 402 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~---~d-~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~- 402 (597)
....+..-.|+|++..++... .. ..+.++++.++ .........+.-..-+|+|++..++++...||.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g--------~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG--------KRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC--------ccceeeccCCccCCccCCCCCCEEEEEECCCCCc
Confidence 445667778999988765542 22 45889999887 111122233444557899966667777777776
Q ss_pred -EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEec
Q 042883 403 -VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 403 -i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 481 (597)
|+++|+.++.... +....+.-..=.|+|++..++.+.+..|. -.|.++|+.. .....+....+.-..-.|+
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~-----p~I~~~~~~g--~~~~riT~~~~~~~~p~~S 334 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGR-----PQIYLYDLEG--SQVTRLTFSGGGNSNPVWS 334 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCC-----cceEEECCCC--CceeEeeccCCCCcCccCC
Confidence 5666776665333 44433444467899944444555444443 2477777764 3333333233222366789
Q ss_pred CC-CeEEEeeC-CCc--EEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe
Q 042883 482 SN-NELASAST-DSS--LRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 482 ~~-~~l~s~~~-d~~--v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
|+ .+|+..+. +|. |.+.|+.++..++.+. .......-+|.++|..++..+
T Consensus 335 pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 335 PDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 99 55554443 454 6667766655444333 233344567888888765543
No 403
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00022 Score=70.56 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=79.1
Q ss_pred CceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCcee-EEEEeecCCEEEEEeCCCcEEEEEccCCccccc
Q 042883 473 KAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKN-FVGLTVNNEYIACGSETNEVFVYHKAISKPAAS 550 (597)
Q Consensus 473 ~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 550 (597)
..+.-+.|+|. ..||++..+|.|.+..+. .+.+-++..+...++ +++|.|||+.||+|-.||+|++-|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 45788999999 889999999999999887 888888887777777 999999999999999999999999999988877
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
..+.. ...|..+-|++
T Consensus 100 ~~~s~----------e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSV----------ETDISKGIWDR 115 (665)
T ss_pred ccccc----------ccchheeeccc
Confidence 54432 55677777763
No 404
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1e-05 Score=70.42 Aligned_cols=54 Identities=30% Similarity=0.656 Sum_probs=45.1
Q ss_pred CCcccccccccccccc----------cccccccccHHHHHHhhc--CCCCCCCCCCCCccccccch
Q 042883 37 RDTLCPICKQLMTDAF----------MTACGHSFCYTCIFTHLR--NKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~----------~l~CgH~FC~~Cl~~~~~--~~~~CP~Cr~~~~~~~l~~n 90 (597)
++-.|.||...+...+ .|+|+|+|-.-||.+|.- +.+.||-|+++..+..+.+|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4678999999998664 789999999999999874 55679999999987766554
No 405
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.64 E-value=0.014 Score=56.03 Aligned_cols=139 Identities=6% Similarity=0.068 Sum_probs=55.6
Q ss_pred EEEEccCCCcceeeeccCC--CceEEEEecCCC-eEEE-----eeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC
Q 042883 454 HYYDLRNISQPLHVFNGHK--KAVSYVKFLSNN-ELAS-----ASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN 525 (597)
Q Consensus 454 ~i~d~~~~~~~~~~~~~~~--~~v~~v~~~~~~-~l~s-----~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g 525 (597)
+||-++..+.....+..+. ..+.-=-|.|++ .|.- ++.+..|.-+|+.+++...... .......-.++||
T Consensus 217 RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg 294 (386)
T PF14583_consen 217 RIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDG 294 (386)
T ss_dssp SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTS
T ss_pred EEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCC
Confidence 5565554333333333222 223334567772 2221 2233456667777665433222 1223344556788
Q ss_pred CEEEEEeCCC----------------cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeE-EEecCcc
Q 042883 526 EYIACGSETN----------------EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTM-LTANRKG 588 (597)
Q Consensus 526 ~~l~~~~~d~----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-~s~~~dg 588 (597)
++++.-|.|. .|+++++..+...........-.....+. ...=-.+.|+|||+++ ++....|
T Consensus 295 ~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~-q~~hPhp~FSPDgk~VlF~Sd~~G 373 (386)
T PF14583_consen 295 KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR-QVTHPHPSFSPDGKWVLFRSDMEG 373 (386)
T ss_dssp SEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBS-STT----EE-TTSSEEEEEE-TTS
T ss_pred CEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCC-ccCCCCCccCCCCCEEEEECCCCC
Confidence 8887655542 45667776665432222111000000000 0011457899999985 5567788
Q ss_pred cEEEEEe
Q 042883 589 AIKVLVL 595 (597)
Q Consensus 589 ~v~iwd~ 595 (597)
...||=+
T Consensus 374 ~~~vY~v 380 (386)
T PF14583_consen 374 PPAVYLV 380 (386)
T ss_dssp S-EEEEE
T ss_pred CccEEEE
Confidence 8888754
No 406
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0043 Score=65.60 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=86.6
Q ss_pred CeEEEEEccCCCcceeeeccCCCc-eEEEEecC------CCeEEEeeCCCcEEEEEcCCCc-ceeeeeC----CCCceeE
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKA-VSYVKFLS------NNELASASTDSSLRLWDVKENL-PLHTFRG----HTNEKNF 518 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~-v~~v~~~~------~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~----~~~~v~~ 518 (597)
..|+-.|+.. ++.+..+..|... |..++-.. +..-+.|-.++.+..||.|-.. .+..-.. .....++
T Consensus 504 ~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 504 NKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 4589999998 8899998877644 55554211 1235667778899999998632 2211111 2234556
Q ss_pred EEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 519 VGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 519 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
++-+.+| +||+|+.+|.|++||. .|+...+.-.+ -..+|.+|..+.||+||++.+.. .+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~----------lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG----------LGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC----------CCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 6665555 7899999999999994 34332222211 16799999999999998877644 5556553
No 407
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.63 E-value=1.8e-05 Score=75.73 Aligned_cols=53 Identities=26% Similarity=0.626 Sum_probs=44.6
Q ss_pred cCCCCCcccccccccccccccccccccccHHHHHHhhcCC-----CCCCCCCCCCccc
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNK-----SDCPCCGCHLTCK 85 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~-----~~CP~Cr~~~~~~ 85 (597)
..=..+..|.+|.|.-.||+...|.|.||+-||..|+.+- -.||+|...++.+
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3445578899999999999999999999999999888743 3499998888765
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.62 E-value=0.0025 Score=61.50 Aligned_cols=273 Identities=13% Similarity=0.127 Sum_probs=113.2
Q ss_pred hccccceeeeeecc-ccccCCCCcEEEEEEc-----CCCCEEEEee-CCCcEEEEecccCccCCccCCCCc----eEecC
Q 042883 309 TQYSRLRVIAELRH-GDLFHAANIISSIEFD-----RDDELFASAG-VSRRIKIFEFSSVVNEPRDVHYPM----VEMPT 377 (597)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~-----~~~~~l~t~~-~d~~v~iw~~~~~~~~~~~~~~~~----~~~~~ 377 (597)
..|.++.....+.. +.-.||.+.-.|-+.. ...++|+..+ .++.|+|+|+.+........+... .....
T Consensus 49 ~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g 128 (461)
T PF05694_consen 49 PTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTG 128 (461)
T ss_dssp TTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-
T ss_pred CCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcC
Confidence 34444443333433 3456666543332211 1345666655 688999999986532222111000 00001
Q ss_pred CCceeEEEEecCCCCEEEEeeC------CCcEEEEeCCCCeeeeEEeec---cceeEEEEeCCCCCceEEeecCCCcc--
Q 042883 378 RSKLSCLSWNKYTKNLIASSDY------DGIVTIWDVTTSQSVMEYEEH---EKRAWSVDFSCTEPSMLVSGSDDCKV-- 446 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d~~~-- 446 (597)
-.....+...| ++++++++-. -|.+.++|-++.+........ ...-+++.|.| ..+.++|.....--
T Consensus 129 ~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~ 206 (461)
T PF05694_consen 129 LSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMF 206 (461)
T ss_dssp EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHH
T ss_pred CCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhc
Confidence 12222333445 6778887532 256888888777666665432 33457788888 77888776532211
Q ss_pred -----------cCCCCeEEEEEccCCCcceeeeccCC--CceEEEEecCC---Ce-EEEeeCCCcEEEEEc-CCCc----
Q 042883 447 -----------GSADHHIHYYDLRNISQPLHVFNGHK--KAVSYVKFLSN---NE-LASASTDSSLRLWDV-KENL---- 504 (597)
Q Consensus 447 -----------~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~v~~~~~---~~-l~s~~~d~~v~iwd~-~~~~---- 504 (597)
+.....+++||+.. .+.++++.-.. ..+..|.|..+ .+ ++.+...++|..|-- ..++
T Consensus 207 ~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 207 EKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp TT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred ccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee
Confidence 44567899999997 77777765333 23556777544 33 444444445554433 3322
Q ss_pred ceeeeeCC-----------------CCceeEEEEeecCCEEEEEe-CCCcEEEEEccCC---ccccccccCCCCCCC---
Q 042883 505 PLHTFRGH-----------------TNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAIS---KPAASHRFGSDADHV--- 560 (597)
Q Consensus 505 ~~~~~~~~-----------------~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~--- 560 (597)
.+..+... ..-|+.|.+|.|.++|+.+. ..|.|+.||+... +.+.....+......
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~ 365 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHP 365 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--T
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCc
Confidence 12222110 24568899999999987765 5899999999763 233333333211100
Q ss_pred --cCcCCCcceEEEEEccCCCeEEEe
Q 042883 561 --DDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 561 --~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
.+..-.+...-|..|-||+.|...
T Consensus 366 ~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 366 VVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TS------S----EEE-TTSSEEEEE
T ss_pred cccccccCCCCCeEEEccCCeEEEEE
Confidence 000013345678888899887654
No 409
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.60 E-value=0.033 Score=54.90 Aligned_cols=235 Identities=17% Similarity=0.185 Sum_probs=122.8
Q ss_pred cCCCCEEEEee---------CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 338 DRDDELFASAG---------VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 338 ~~~~~~l~t~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
|||+++++... ..+.+.|||+.++... ........+....|+| +++.++... ++.|.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--------~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--------PLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--------ESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--------ECcCCccccccceeec-CCCeeEEEe-cCceEEEEC
Confidence 57787777642 2467889998876111 1111145788899999 677777765 688999998
Q ss_pred CCCeeeeEE-ee-------c---------cceeEEEEeCCCCCceEEeec-CCCcc------------------------
Q 042883 409 TTSQSVMEY-EE-------H---------EKRAWSVDFSCTEPSMLVSGS-DDCKV------------------------ 446 (597)
Q Consensus 409 ~~~~~~~~~-~~-------~---------~~~v~~~~~~~~~~~~l~s~~-~d~~~------------------------ 446 (597)
.++...+.- .+ - -+.-..+-|+| ++..|+... ++..+
T Consensus 71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP 149 (353)
T PF00930_consen 71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP 149 (353)
T ss_dssp TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--
T ss_pred CCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC
Confidence 777443221 11 0 12346788999 666555543 33333
Q ss_pred --cCCCC--eEEEEEccCCCcce-eee---ccCCCceEEEEecCCCe-EEEee--CCC---cEEEEEcCCCcceeeee-C
Q 042883 447 --GSADH--HIHYYDLRNISQPL-HVF---NGHKKAVSYVKFLSNNE-LASAS--TDS---SLRLWDVKENLPLHTFR-G 511 (597)
Q Consensus 447 --~~~d~--~i~i~d~~~~~~~~-~~~---~~~~~~v~~v~~~~~~~-l~s~~--~d~---~v~iwd~~~~~~~~~~~-~ 511 (597)
|..+- .+.|+|+.++.... ... ..-...+..+.|.+++. |+..- .+. .+.++|..++.....+. .
T Consensus 150 k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 150 KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence 33333 34556776522211 111 12345688899999944 54433 222 36777887765433222 1
Q ss_pred CCCc---eeEEEEe-ecCC-EEEEEeCCCc--EEEEEccCCccccccccCCCCCCCcCcCCCcceEE-EEEccCCCeE-E
Q 042883 512 HTNE---KNFVGLT-VNNE-YIACGSETNE--VFVYHKAISKPAASHRFGSDADHVDDDMGSYFISA-VCWKSDSPTM-L 582 (597)
Q Consensus 512 ~~~~---v~~v~~s-~~g~-~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-v~~~~~~~~l-~ 582 (597)
.... .....|. +++. +|.....||. |.+++...+... .+..+ ...|+. +.|+++++.| +
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G-----------~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG-----------DWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S-----------SS-EEEEEEEECTSSEEEE
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC-----------ceeecccceEcCCCCEEEE
Confidence 1222 2345554 5544 5555557775 445555555433 22222 455655 5688887654 3
Q ss_pred EecCc--ccEEEEEe
Q 042883 583 TANRK--GAIKVLVL 595 (597)
Q Consensus 583 s~~~d--g~v~iwd~ 595 (597)
++..+ +.-+||.+
T Consensus 298 ~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 298 TANGDNPGERHLYRV 312 (353)
T ss_dssp EESSGGTTSBEEEEE
T ss_pred EecCCCCCceEEEEE
Confidence 45442 34555554
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.58 E-value=0.024 Score=55.83 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=58.6
Q ss_pred EEEEcCCCCEEEEeeCCCcEEE---EecccCc-cCCccCCCCceEecCC--CceeEEEEecC----------CCCEEEEe
Q 042883 334 SIEFDRDDELFASAGVSRRIKI---FEFSSVV-NEPRDVHYPMVEMPTR--SKLSCLSWNKY----------TKNLIASS 397 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~i---w~~~~~~-~~~~~~~~~~~~~~~~--~~i~~v~~~~~----------~~~~l~s~ 397 (597)
.++.+|+++.|+.+..+..|.+ |+..... ..............+. ..|+++.|-|- +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999987766555 5432210 0000000000111121 57888877652 35789999
Q ss_pred eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeC
Q 042883 398 DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFS 430 (597)
Q Consensus 398 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 430 (597)
..+|.|++|.. +|..+..-.-|..+|..+...
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999985 565554444567778777764
No 411
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.003 Score=61.56 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=85.3
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEEecCCCe--------EEEeeCCCcEEEEEcCCCc--ceeeeeCCC----Cce
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE--------LASASTDSSLRLWDVKENL--PLHTFRGHT----NEK 516 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~--------l~s~~~d~~v~iwd~~~~~--~~~~~~~~~----~~v 516 (597)
..++-.|+.. ++.+..++-+.. |+-+.+.|+.. -+.|-.|..|.-||.|-.. .+....+|. ...
T Consensus 356 ~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 356 DKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred Ccceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 3488889987 888888886665 77777877722 3456678889999998422 222222221 123
Q ss_pred eEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 517 NFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 517 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|.+-..+| +|++||.+|.|++||. .+....+.-.+- ..+|..|..+.+|.+|++.+. .++.+-+
T Consensus 434 sc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL----------G~~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL----------GDAIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred ceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc----------CCceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 344444444 7899999999999997 444443332221 778999999999999887664 3444443
No 412
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.013 Score=58.40 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=94.8
Q ss_pred CCceeEEEEecCCCCEEEEeeCC---CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYD---GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
...+..-+|+|+...+.+..-.. ..+.++|+.++....... ..+.-..-+|+|++..++++...|+. -.|+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~-----~~iy 265 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGS-----PDIY 265 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCC-----ccEE
Confidence 34555667888444433332222 359999998876554443 33444567899966666666666653 3588
Q ss_pred EEEccCCCcceeeeccCCCceEEEEecCC-Ce-EEEeeCCCc--EEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEE
Q 042883 455 YYDLRNISQPLHVFNGHKKAVSYVKFLSN-NE-LASASTDSS--LRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 455 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~-l~s~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 530 (597)
++|+.. +. +..+....+.-..=.|+|+ .. +++.+..|. |.++|...+.. ..+....+.-..-.|+|||++|+.
T Consensus 266 ~~dl~~-~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 266 LMDLDG-KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEcCCC-Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 889886 33 3334333333335578999 33 445555565 55566655443 444433333336789999999887
Q ss_pred EeC-CCc--EEEEEccCCc
Q 042883 531 GSE-TNE--VFVYHKAISK 546 (597)
Q Consensus 531 ~~~-d~~--i~iwd~~~~~ 546 (597)
.+. +|. |.+.|+.++.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeccCCceeeEEeccCCCC
Confidence 664 344 6666665555
No 413
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=5.5e-05 Score=71.17 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=40.0
Q ss_pred CCCcccccccccccccc-------cc-cccccccHHHHHHhhcCC-------CCCCCCCCCCcc
Q 042883 36 DRDTLCPICKQLMTDAF-------MT-ACGHSFCYTCIFTHLRNK-------SDCPCCGCHLTC 84 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~-------~l-~CgH~FC~~Cl~~~~~~~-------~~CP~Cr~~~~~ 84 (597)
..+-+|.||++.-.+++ +| +|-|+||..||.+|-... ..||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 44889999999999987 34 499999999999988432 349999988763
No 414
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.49 E-value=0.0037 Score=48.10 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=66.7
Q ss_pred eeEEEEec---CCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 381 LSCLSWNK---YTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 381 i~~v~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
|+++++.. ++.+.|++|+.|..|++|+- ...+..+.. .+.|..+.-.. ...|+.+-.+|++|-.++..++|.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCcceeee
Confidence 44555443 34579999999999999974 466777754 55688887774 466888887777666666666666
Q ss_pred ccCCCcceeeeccCCCceEEEEecCC-----CeEEEeeCCCcEE
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLSN-----NELASASTDSSLR 496 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~l~s~~~d~~v~ 496 (597)
+.+ ...+.++.+..- ..|++|-.+|.|-
T Consensus 77 iKS-----------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-----------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-----------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 553 122455554332 2599999998874
No 415
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.49 E-value=4e-05 Score=77.01 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=40.2
Q ss_pred Ccccccccccccccc---cccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 38 DTLCPICKQLMTDAF---MTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~---~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
.-.||+|+.-|.|-. -.+|+|.||..||..|-.....||+||..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 345999999998863 34599999999999999999999999999964
No 416
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00059 Score=63.99 Aligned_cols=43 Identities=26% Similarity=0.552 Sum_probs=33.6
Q ss_pred cccccccccccc---cccccccccccHHHHHHhhcCC--------CCCCCCCCC
Q 042883 39 TLCPICKQLMTD---AFMTACGHSFCYTCIFTHLRNK--------SDCPCCGCH 81 (597)
Q Consensus 39 l~C~IC~~~f~~---P~~l~CgH~FC~~Cl~~~~~~~--------~~CP~Cr~~ 81 (597)
..|.||++-+.= =+-+||+|.||+.|+..|.... -.||.|.-.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 569999999984 3688999999999999998722 238876543
No 417
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.016 Score=58.07 Aligned_cols=167 Identities=10% Similarity=0.073 Sum_probs=89.1
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc------ceeeeccCCCce
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ------PLHVFNGHKKAV 475 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~v 475 (597)
.|.||+. .|+.+..+.-..+.+.++.|+. +..+++... ||.+++||+.. .. .+....-....+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~e~LvvV~~--------dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-DEELVVVQS--------DGTVRVYDLFG-EFQFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC-CCeEEEEEc--------CCEEEEEeCCC-ceeechhhhccccCcccccc
Confidence 5999986 5677777665558999999986 555555442 56699999873 22 011111111222
Q ss_pred EEEEecCCCeEEEeeCCCcEEEEEcCCCc-ceeee---eCCC-----C-cee-EEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 476 SYVKFLSNNELASASTDSSLRLWDVKENL-PLHTF---RGHT-----N-EKN-FVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 476 ~~v~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~---~~~~-----~-~v~-~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
....+..+|.++.. .++.+.+..-.... ....+ .+.. . ... ...++.+....+....++.+.+.+-..
T Consensus 131 ~~~~~~~~GivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 131 FAIWFYKNGIVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred cccccCCCCEEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 22232334544433 34444433222111 11111 1100 0 001 123444555555555556666444322
Q ss_pred CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 545 SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.+. +. ..+++..|+.||+|++||.-..+|.+.|...
T Consensus 210 ~~~---i~------------~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 210 FKQ---ID------------SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred ccc---cc------------CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 211 11 1467999999999999999888999888753
No 418
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.46 E-value=0.018 Score=59.42 Aligned_cols=239 Identities=10% Similarity=0.109 Sum_probs=123.6
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCce-eEEEEecCCCCEEEEee---------CCCcEEEEeCCCC
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKL-SCLSWNKYTKNLIASSD---------YDGIVTIWDVTTS 411 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i-~~v~~~~~~~~~l~s~~---------~dg~i~iwd~~~~ 411 (597)
..++.++.+|.|.-+|..++............ .....+ ....+. +..++.++ .+|.+.-+|..+|
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCC
Confidence 57777888999999998887322111100000 000000 011111 23454543 3678999999999
Q ss_pred eeeeEEeeccc--------------------eeE-EEEeCCCCCceEEeecCCCcc-----------cCCCCeEEEEEcc
Q 042883 412 QSVMEYEEHEK--------------------RAW-SVDFSCTEPSMLVSGSDDCKV-----------GSADHHIHYYDLR 459 (597)
Q Consensus 412 ~~~~~~~~~~~--------------------~v~-~~~~~~~~~~~l~s~~~d~~~-----------~~~d~~i~i~d~~ 459 (597)
+.+..+..... .|+ ..++.+ .+..++.++.++.. ...++.|.-+|..
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence 88777643211 011 123333 33444445433310 1123468888888
Q ss_pred CCCcceeeec--cCCC--------c-eEEEE-ecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC
Q 042883 460 NISQPLHVFN--GHKK--------A-VSYVK-FLSN--NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN 525 (597)
Q Consensus 460 ~~~~~~~~~~--~~~~--------~-v~~v~-~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g 525 (597)
+ ++.+=.+. .|.. + +..+. ..-. ..+++++.+|.+...|..+|+.+-...... ..++.+| +
T Consensus 265 t-G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~ 339 (488)
T cd00216 265 T-GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-G 339 (488)
T ss_pred C-CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-c
Confidence 7 44443332 1110 0 01111 1111 247788899999999999999887654211 1233333 2
Q ss_pred CEEEEE------------------eCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcce--EEEEEccCCCeEEEec
Q 042883 526 EYIACG------------------SETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI--SAVCWKSDSPTMLTAN 585 (597)
Q Consensus 526 ~~l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i--~~v~~~~~~~~l~s~~ 585 (597)
.++.+ ..+|.|.-+|..+|+.+-....+........ ..+. ..+.. .+..|+.++
T Consensus 340 -~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~---g~~~~~~~~~~--~g~~v~~g~ 413 (488)
T cd00216 340 -LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI---GFPHWGGSLAT--AGNLVFAGA 413 (488)
T ss_pred -eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc---CCcccCcceEe--cCCeEEEEC
Confidence 23222 2467888889999888776665411000000 0011 11222 456788888
Q ss_pred CcccEEEEEecC
Q 042883 586 RKGAIKVLVLAA 597 (597)
Q Consensus 586 ~dg~v~iwd~~~ 597 (597)
.||.|+.+|.++
T Consensus 414 ~dG~l~ald~~t 425 (488)
T cd00216 414 ADGYFRAFDATT 425 (488)
T ss_pred CCCeEEEEECCC
Confidence 999998888643
No 419
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.45 E-value=6.5e-05 Score=51.94 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=37.0
Q ss_pred cccccccccccc---------------cccc-ccccccHHHHHHhhcCCCCCCCCCCCCccc
Q 042883 40 LCPICKQLMTDA---------------FMTA-CGHSFCYTCIFTHLRNKSDCPCCGCHLTCK 85 (597)
Q Consensus 40 ~C~IC~~~f~~P---------------~~l~-CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~ 85 (597)
.|.||-.-|.++ +... |.|.|-..||.+|+.....||.||+.....
T Consensus 22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 577776666643 4444 999999999999999988999999987653
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.45 E-value=0.13 Score=50.01 Aligned_cols=248 Identities=13% Similarity=0.099 Sum_probs=124.9
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC--CCCEEEEeeC-C-------
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY--TKNLIASSDY-D------- 400 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~--~~~~l~s~~~-d------- 400 (597)
..++|+|.|||+++++ ...|.|.+++.... ..................+..++++|+ .+..|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~-~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGS-LKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTE-ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCc-CcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4679999999877665 55999999993332 100000011122334567899999983 1234443332 1
Q ss_pred -CcEEEEeCCCC-------e-eeeEEee---ccceeEEEEeCCCCCceEEeecCCCcc------cCCCCeEEEEEccCC-
Q 042883 401 -GIVTIWDVTTS-------Q-SVMEYEE---HEKRAWSVDFSCTEPSMLVSGSDDCKV------GSADHHIHYYDLRNI- 461 (597)
Q Consensus 401 -g~i~iwd~~~~-------~-~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~~------~~~d~~i~i~d~~~~- 461 (597)
..|.-|....+ + .+..+.. ....-..|+|.| ++.+.++.++.+.. ....|.|.-.+....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 23444444332 1 1111121 223456699999 77777776655431 233455555554421
Q ss_pred --Cc--------ceeee-ccCCCceEEEEecCC-CeEEEee--CCCcEEEEEcCCC------------------------
Q 042883 462 --SQ--------PLHVF-NGHKKAVSYVKFLSN-NELASAS--TDSSLRLWDVKEN------------------------ 503 (597)
Q Consensus 462 --~~--------~~~~~-~~~~~~v~~v~~~~~-~~l~s~~--~d~~v~iwd~~~~------------------------ 503 (597)
.. ....+ .++. ....++|+|. +.|.++. .|+.=.|.-+..+
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 00 11122 1232 3568999999 8777653 2222222222211
Q ss_pred -----cceeeeeCCCCceeEEEEee-------cCCEEEEEeCCCcEEEEEccCCcccc-ccccCCCCCCCcCcCCCcceE
Q 042883 504 -----LPLHTFRGHTNEKNFVGLTV-------NNEYIACGSETNEVFVYHKAISKPAA-SHRFGSDADHVDDDMGSYFIS 570 (597)
Q Consensus 504 -----~~~~~~~~~~~~v~~v~~s~-------~g~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~h~~~i~ 570 (597)
.++..+..| ..+..+.|-. .|.++++.-..+.|....+..+..+. ...+. ......+.
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~r~~ 309 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--------GGFGGRPR 309 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------TTSSS-EE
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--------ccCCCCce
Confidence 122333333 4456666653 34566666556788888876443322 11111 01144799
Q ss_pred EEEEccCCCeEEEecCcccEE
Q 042883 571 AVCWKSDSPTMLTANRKGAIK 591 (597)
Q Consensus 571 ~v~~~~~~~~l~s~~~dg~v~ 591 (597)
+|++.|||.++++.+.+|.|.
T Consensus 310 ~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 DVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTSEEEEEE-TTTTEE
T ss_pred EEEEcCCCeEEEEECCCCeEe
Confidence 999999999999988888774
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.44 E-value=0.024 Score=49.55 Aligned_cols=147 Identities=8% Similarity=0.024 Sum_probs=90.4
Q ss_pred ceeEEEEeCCCCCceEEeecCCCcc--cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--CeEEEeeCCCcEEE
Q 042883 422 KRAWSVDFSCTEPSMLVSGSDDCKV--GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--NELASASTDSSLRL 497 (597)
Q Consensus 422 ~~v~~~~~~~~~~~~l~s~~~d~~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~i 497 (597)
.+.++-..+| ++++++-.-.|... -...|.++.|-.. .+ +..+..--.--+.++|+.+ ...++-+.+-.|.-
T Consensus 109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG--HQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCC-CCceeeeeeccccccccccccEEEEeccC--CC-ceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 4566777888 67765433222110 1122445555443 22 2222222234467889877 34667778888888
Q ss_pred EE--cCCC-----cceeeeeC----CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCC
Q 042883 498 WD--VKEN-----LPLHTFRG----HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGS 566 (597)
Q Consensus 498 wd--~~~~-----~~~~~~~~----~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 566 (597)
|| ..+| +.+..++. ..-..-.++++.+|.+.++.-..++|..+|..+|+.+..+.++ .
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-----------t 253 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-----------T 253 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-----------C
Confidence 88 4443 33444432 1112345777778998888888899999999999999999886 6
Q ss_pred cceEEEEEc-cCCCeEEE
Q 042883 567 YFISAVCWK-SDSPTMLT 583 (597)
Q Consensus 567 ~~i~~v~~~-~~~~~l~s 583 (597)
..|++++|- ++-..|++
T Consensus 254 ~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 254 PQITSCCFGGKNLDILYV 271 (310)
T ss_pred CceEEEEecCCCccEEEE
Confidence 679999996 33344443
No 422
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.015 Score=55.12 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=106.2
Q ss_pred EEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 385 SWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 385 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
.|.+..+.++.+.-..+.|.-|+..++... .+. +.+.+.++.... .+..|+++.. .+.+++... +..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d-~~g~Lv~~~~---------g~~~~~~~~-~~~ 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALID-AGGRLIACEH---------GVRLLDPDT-GGK 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeec-CCCeEEEEcc---------ccEEEeccC-Cce
Confidence 466744556777777788999998765332 222 223344444432 3444444432 267777754 222
Q ss_pred eeeec----c-CCCceEEEEecCCCeEEEeeCC------------CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCE
Q 042883 465 LHVFN----G-HKKAVSYVKFLSNNELASASTD------------SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEY 527 (597)
Q Consensus 465 ~~~~~----~-~~~~v~~v~~~~~~~l~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 527 (597)
+..+. + .....+.+...|++.+..+... |.|+-+|. .+..+..+..+-...+.++|||||+.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 12221 1 1245667888888777766655 33444443 46666666665566689999999987
Q ss_pred EEEEe-CCCcEEEEEccC--CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcc-cEEEEEe
Q 042883 528 IACGS-ETNEVFVYHKAI--SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKG-AIKVLVL 595 (597)
Q Consensus 528 l~~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg-~v~iwd~ 595 (597)
++.+. ..+.|+-|++.. +........ .....+.+..-.++.+.+|.+.+++..+| .|.+|+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~------~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGF------VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceE------EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 66654 458898888763 211111000 00001134455667777777765444443 6777654
No 423
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00011 Score=63.41 Aligned_cols=53 Identities=19% Similarity=0.431 Sum_probs=46.3
Q ss_pred CCccccccccccccc----ccccccccccHHHHHHhhcCCCCCCCCCCCCccccccc
Q 042883 37 RDTLCPICKQLMTDA----FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P----~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~ 89 (597)
.-..||||.+.+.+. +.-||||.||+.|.|+++..-..||+|.+++.-+++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 457899999999985 44579999999999999999999999999999888653
No 424
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.00025 Score=61.40 Aligned_cols=134 Identities=7% Similarity=-0.031 Sum_probs=79.1
Q ss_pred CCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCC-CcceeeeeCCCCce-eEEEEeecCCE
Q 042883 450 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE-NLPLHTFRGHTNEK-NFVGLTVNNEY 527 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v-~~v~~s~~g~~ 527 (597)
++.|.-++++........-.-+.....-+ --+..+++|+.+|.|.+|.... +.....+..-...+ ..|.--.++.+
T Consensus 39 ~~~v~~~~~~k~k~s~rse~~~~e~~~v~--~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~ 116 (238)
T KOG2444|consen 39 DGLVRERKVRKHKESCRSERFIDEGQRVV--TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSL 116 (238)
T ss_pred Ccccccchhhhhhhhhhhhhhhhcceeec--ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccce
Confidence 55577777765221111111122221111 1226799999999999999863 11111111112222 22333345668
Q ss_pred EEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCC-cceEEEEEccCCCeEEEe--cCcccEEEEEec
Q 042883 528 IACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGS-YFISAVCWKSDSPTMLTA--NRKGAIKVLVLA 596 (597)
Q Consensus 528 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~--~~dg~v~iwd~~ 596 (597)
..++..||.|+.|++.-++.+.... +|. .++.....+..+.+++.+ |.|..++.|++.
T Consensus 117 ~c~~~~dg~ir~~n~~p~k~~g~~g-----------~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 117 GCVGAQDGRIRACNIKPNKVLGYVG-----------QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eEEeccCCceeeeccccCceeeeec-----------cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 8899999999999988777655443 233 556666666667777777 888888888875
No 425
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.34 E-value=0.00017 Score=45.52 Aligned_cols=42 Identities=26% Similarity=0.770 Sum_probs=21.8
Q ss_pred ccccccccccc--ccc--cccccccHHHHHHhhc-CCCCCCCCCCCC
Q 042883 41 CPICKQLMTDA--FMT--ACGHSFCYTCIFTHLR-NKSDCPCCGCHL 82 (597)
Q Consensus 41 C~IC~~~f~~P--~~l--~CgH~FC~~Cl~~~~~-~~~~CP~Cr~~~ 82 (597)
||+|.+.+..- -.. +||+-.|+.|..+..+ ....||-||+.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999988432 334 4999999999999886 567799999876
No 426
>PRK10115 protease 2; Provisional
Probab=97.32 E-value=0.35 Score=52.16 Aligned_cols=198 Identities=10% Similarity=0.042 Sum_probs=97.1
Q ss_pred CcEEEEEEcCCCCEEEEeeCC-----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC----
Q 042883 330 NIISSIEFDRDDELFASAGVS-----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---- 400 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---- 400 (597)
-.+..+.|+|||++|+.+.+. ..|++.|+.++. ......... . ..++|.+++..++++...+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-------~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-------WYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-------CCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCC
Confidence 356778899999988876442 357888887651 000111111 1 4589998544555554432
Q ss_pred -CcEEEEeCCCC--eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC-CcceeeeccCCCceE
Q 042883 401 -GIVTIWDVTTS--QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI-SQPLHVFNGHKKAVS 476 (597)
Q Consensus 401 -g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~ 476 (597)
..|+.+++.++ +-...+........-..+.+.++.+++..+..+ .++.+.+|+.... +.....+....+...
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA----TTSEVLLLDAELADAEPFVFLPRRKDHEY 273 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC----ccccEEEEECcCCCCCceEEEECCCCCEE
Confidence 36888888877 333344433333332223332555554444433 3567899985321 222222222222223
Q ss_pred EEEecCCCeEEEeeC----CCcEEEEEcCCCcceeeeeCC-C-CceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 477 YVKFLSNNELASAST----DSSLRLWDVKENLPLHTFRGH-T-NEKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 477 ~v~~~~~~~l~s~~~----d~~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
.+. +..+.|..-+. ...|...++........+..+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus 274 ~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 274 SLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 332 32333333222 223444454421122333334 2 356777776 3344555556666554443
No 427
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00022 Score=70.30 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=42.6
Q ss_pred CCCCCccccccccccc----ccccccccccccHHHHHHhhcCCCCCC--CCCCCC--ccccccchHHHHHHH
Q 042883 34 EVDRDTLCPICKQLMT----DAFMTACGHSFCYTCIFTHLRNKSDCP--CCGCHL--TCKHIFPNLLLNKLL 97 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~----~P~~l~CgH~FC~~Cl~~~~~~~~~CP--~Cr~~~--~~~~l~~n~~~~~~~ 97 (597)
...+-|.|+||+..|- .||.|-|||+.|+.|++..... .|| ...-.. .+++.+.|..+-..+
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--SCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--cCCCCccccchhcChhhcchhHHHHHhh
Confidence 3445688999988886 6999999999999999977653 466 222222 234566666554443
No 428
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=3.3e-05 Score=68.27 Aligned_cols=44 Identities=30% Similarity=0.716 Sum_probs=36.5
Q ss_pred CCCCcccccccccccccccccccccc-cHHHHHHhhcCCCCCCCCCCCC
Q 042883 35 VDRDTLCPICKQLMTDAFMTACGHSF-CYTCIFTHLRNKSDCPCCGCHL 82 (597)
Q Consensus 35 ~~~~l~C~IC~~~f~~P~~l~CgH~F-C~~Cl~~~~~~~~~CP~Cr~~~ 82 (597)
+.++-.|.||+|..+|-+.|+|||.- |.+|-.+.. .||+||+..
T Consensus 297 ~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi 341 (350)
T KOG4275|consen 297 LATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYI 341 (350)
T ss_pred hhHHHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHH
Confidence 34467899999999999999999955 999976543 699999765
No 429
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.28 E-value=0.011 Score=61.82 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=106.7
Q ss_pred EEEEEcCCCCEEEEeeCC------CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc----
Q 042883 333 SSIEFDRDDELFASAGVS------RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI---- 402 (597)
Q Consensus 333 ~~i~~~~~~~~l~t~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~---- 402 (597)
.+++.. +|.+.++||.| .++..||..... .... .+... ...-.+++.. ++.+.++|+.||.
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~-a~M~~---~R~~~~v~~l--~g~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPV-APMNT---KRSDFGVAVL--DGKLYAVGGFDGEKSLN 396 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--eecc-CCccC---ccccceeEEE--CCEEEEEeccccccccc
Confidence 344444 45778888888 346677776652 1111 11111 1111223333 5888999998874
Q ss_pred -EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-eeeeccCCCceEEEEe
Q 042883 403 -VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LHVFNGHKKAVSYVKF 480 (597)
Q Consensus 403 -i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~ 480 (597)
|-.||..+.+....-. ........+...-++.+.++||.++.. ..-..+..||..++... +..+..-. .-..++.
T Consensus 397 svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~-~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~ 473 (571)
T KOG4441|consen 397 SVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSS-NCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAV 473 (571)
T ss_pred cEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCc-cccceEEEEcCCCCceeecCCccccc-ccceEEE
Confidence 6778877654322211 111222222222278889999877751 12267899998873221 11111111 1123555
Q ss_pred cCCCeEEEeeCCCc-----EEEEEcCCCcceee--eeCCCCceeEEEEeecCCEEEEEeCCC-----cEEEEEccCCcc
Q 042883 481 LSNNELASASTDSS-----LRLWDVKENLPLHT--FRGHTNEKNFVGLTVNNEYIACGSETN-----EVFVYHKAISKP 547 (597)
Q Consensus 481 ~~~~~l~s~~~d~~-----v~iwd~~~~~~~~~--~~~~~~~v~~v~~s~~g~~l~~~~~d~-----~i~iwd~~~~~~ 547 (597)
..+.+++.||.|+. |..||..+.+.... .......+..+ .-++..+++||.|| +|..||..+.+-
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE--EECCEEEEEecccCccccceeEEcCCCCCce
Confidence 55577888888763 77788887553332 22222222112 23677778888776 466777655543
No 430
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.28 E-value=0.047 Score=53.83 Aligned_cols=236 Identities=11% Similarity=0.074 Sum_probs=114.7
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccC-CccCCCCceEecC---------CCceeEEEEecCCCCEEEEee
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNE-PRDVHYPMVEMPT---------RSKLSCLSWNKYTKNLIASSD 398 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~~---------~~~i~~v~~~~~~~~~l~s~~ 398 (597)
...+....|+|+|+.++... ++.|.+++..++... ...........+- -+.-.++-|+| ++..|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEE
Confidence 45677889999999998886 678999987655111 0000011111111 12235688999 555555543
Q ss_pred -CCCcEEE-----------------------------------EeCCCCeeee-EE----eeccceeEEEEeCCCCCc-e
Q 042883 399 -YDGIVTI-----------------------------------WDVTTSQSVM-EY----EEHEKRAWSVDFSCTEPS-M 436 (597)
Q Consensus 399 -~dg~i~i-----------------------------------wd~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~-~ 436 (597)
.+..|.. +|+.+++... .. ......+..+.|.+ ++. +
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l 198 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRL 198 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEE
Confidence 3333333 3333322211 00 01234577888887 555 3
Q ss_pred EE-eecCCCcccCCCCeEEEEEccCCCcceeeeccCCCce---EEEEec-CC--CeEEEeeCCCcEEEE--EcCCCccee
Q 042883 437 LV-SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV---SYVKFL-SN--NELASASTDSSLRLW--DVKENLPLH 507 (597)
Q Consensus 437 l~-s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v---~~v~~~-~~--~~l~s~~~d~~v~iw--d~~~~~~~~ 507 (597)
++ ..+.+. ....+.++|..++...+.......+.| ....+. ++ .++.....||.-+|| |..++. ..
T Consensus 199 ~~~~~nR~q----~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~ 273 (353)
T PF00930_consen 199 WVQWLNRDQ----NRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PR 273 (353)
T ss_dssp EEEEEETTS----TEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EE
T ss_pred EEEEcccCC----CEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-ee
Confidence 33 223322 234467777766322222222222222 244444 55 455556677775554 544443 44
Q ss_pred eeeCCCCceeE-EEEeecCCEEE-EEeCC--C--cEEEEEcc-CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 508 TFRGHTNEKNF-VGLTVNNEYIA-CGSET--N--EVFVYHKA-ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 508 ~~~~~~~~v~~-v~~s~~g~~l~-~~~~d--~--~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
.+....-.|.. +.|+++++.|+ ++..+ + .|+..++. .+.+.. +... ...-..+.|||+|++
T Consensus 274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~-LT~~-----------~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC-LTCE-----------DGDHYSASFSPDGKY 341 (353)
T ss_dssp ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE-SSTT-----------SSTTEEEEE-TTSSE
T ss_pred ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe-ccCC-----------CCCceEEEECCCCCE
Confidence 55544455644 67888876544 45442 2 45555555 333332 2211 111168999999998
Q ss_pred EEEe
Q 042883 581 MLTA 584 (597)
Q Consensus 581 l~s~ 584 (597)
++-.
T Consensus 342 ~v~~ 345 (353)
T PF00930_consen 342 YVDT 345 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 431
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0031 Score=66.68 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE 419 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 419 (597)
.+..++.|++.|.|...|..+.. ..........++|++++|+. +|..++.|-.+|.|.+||+..++..+.+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL------~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL------GPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc------chhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeee
Confidence 45578899999999998887641 11122223467999999997 899999999999999999999888888876
Q ss_pred ccceeEEE---EeCCCCCceEEeecCCC
Q 042883 420 HEKRAWSV---DFSCTEPSMLVSGSDDC 444 (597)
Q Consensus 420 ~~~~v~~~---~~~~~~~~~l~s~~~d~ 444 (597)
|..+.+++ .+.. ++..+.++...|
T Consensus 171 ~~ap~t~vi~v~~t~-~nS~llt~D~~G 197 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTS-QNSKLLTSDTGG 197 (1206)
T ss_pred cCCccceEEEEEEeC-CCcEEEEccCCC
Confidence 66555444 3333 455677666544
No 432
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.27 E-value=0.00061 Score=41.57 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=33.5
Q ss_pred cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 504 LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 504 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
+.+..+..|...+.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566777888999999999999999999999999996
No 433
>PHA02713 hypothetical protein; Provisional
Probab=97.25 E-value=0.0064 Score=63.57 Aligned_cols=195 Identities=10% Similarity=0.074 Sum_probs=98.6
Q ss_pred CCCEEEEeeCC------CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC-----cEEEEeC
Q 042883 340 DDELFASAGVS------RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG-----IVTIWDV 408 (597)
Q Consensus 340 ~~~~l~t~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg-----~i~iwd~ 408 (597)
++..++.||.+ ..+..||+.+.... ... + ......-.+++.. ++.+.+.||.++ .+..||.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~--~~~-~---m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp 374 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV--ELP-P---MIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTM 374 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe--eCC-C---CcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEEC
Confidence 56677777753 34677777654111 111 0 0111111123333 577888888764 4788998
Q ss_pred CCCeeee--EEeeccceeEEEEeCCCCCceEEeecCCCccc----------------CCCCeEEEEEccCCCcc-eeeec
Q 042883 409 TTSQSVM--EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG----------------SADHHIHYYDLRNISQP-LHVFN 469 (597)
Q Consensus 409 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~----------------~~d~~i~i~d~~~~~~~-~~~~~ 469 (597)
.++.... .+.........++. ++.+.+.||.++... ..-..+..||+.+.... +..+.
T Consensus 375 ~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~ 451 (557)
T PHA02713 375 GDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW 451 (557)
T ss_pred CCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence 8765432 22111111222222 678888887653210 01245888998863211 11111
Q ss_pred cCCCceEEEEecCCCeEEEeeCC------CcEEEEEcCC-Cc--ceeeeeCCCCceeEEEEeecCCEEEEEeCCC--cEE
Q 042883 470 GHKKAVSYVKFLSNNELASASTD------SSLRLWDVKE-NL--PLHTFRGHTNEKNFVGLTVNNEYIACGSETN--EVF 538 (597)
Q Consensus 470 ~~~~~v~~v~~~~~~~l~s~~~d------~~v~iwd~~~-~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~--~i~ 538 (597)
..... .+++...+..++.||.+ ..+..||..+ .+ .+..+.........+.+ +|.++++||.+| .+.
T Consensus 452 ~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 452 TGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQD 528 (557)
T ss_pred ccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence 11111 22333344556667654 2467899886 33 33333322222222323 788889999888 677
Q ss_pred EEEccCCccc
Q 042883 539 VYHKAISKPA 548 (597)
Q Consensus 539 iwd~~~~~~~ 548 (597)
.||..+.+-.
T Consensus 529 ~yd~~~~~W~ 538 (557)
T PHA02713 529 TFNVYTYEWN 538 (557)
T ss_pred hcCccccccc
Confidence 7777665543
No 434
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.23 E-value=0.00015 Score=46.84 Aligned_cols=49 Identities=24% Similarity=0.626 Sum_probs=37.8
Q ss_pred CCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCcccc
Q 042883 36 DRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKH 86 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 86 (597)
..+..|-.|...=...+.+||||..|+.|-- .+....||.|..++...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~--~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFP--GERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccC--hhhccCCCCCCCcccCCC
Confidence 4467788888888899999999999999853 122234999999987544
No 435
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.083 Score=47.80 Aligned_cols=213 Identities=12% Similarity=0.119 Sum_probs=112.8
Q ss_pred EEEEEEcCCC-CEEEEeeCCCc-EEEEecccCccCCc-cCCCCceEecCCCceeEEEEecCCCCEEEEeeCC-----CcE
Q 042883 332 ISSIEFDRDD-ELFASAGVSRR-IKIFEFSSVVNEPR-DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD-----GIV 403 (597)
Q Consensus 332 v~~i~~~~~~-~~l~t~~~d~~-v~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d-----g~i 403 (597)
-..|+|+|.. .-++.+-.-|+ ..+||.++...... ........++| =.|+| ++.+|+..-+| |.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~-dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSP-DGRLLYATENDFDPNRGVI 142 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCC-CCcEEEeecCCCCCCCceE
Confidence 3467788744 34555555555 56788876611100 11111222333 35788 78888776433 679
Q ss_pred EEEeCCCC-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-----------cCCCCeEEEEEccCCCcceee--ec
Q 042883 404 TIWDVTTS-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-----------GSADHHIHYYDLRNISQPLHV--FN 469 (597)
Q Consensus 404 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-----------~~~d~~i~i~d~~~~~~~~~~--~~ 469 (597)
-|||.+.+ +.+..+..|.-....+.|.+ |+..++.+...-.+ .+..-.+.+.|..+ +..+.. +.
T Consensus 143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at-G~liekh~Lp 220 (366)
T COG3490 143 GVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT-GNLIEKHTLP 220 (366)
T ss_pred EEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccc-cchhhhccCc
Confidence 99998754 55677778888888999998 77776665421000 11111223333222 222211 11
Q ss_pred --cCCCceEEEEecCCCeEEEeeC------CCcEEEEEcCCCcceeeeeC-------CCCceeEEEEeecCCEEEEEe-C
Q 042883 470 --GHKKAVSYVKFLSNNELASAST------DSSLRLWDVKENLPLHTFRG-------HTNEKNFVGLTVNNEYIACGS-E 533 (597)
Q Consensus 470 --~~~~~v~~v~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~-------~~~~v~~v~~s~~g~~l~~~~-~ 533 (597)
.+.-.|.-++..+++.+..|.. |---.+=-.+.++++.-+.. ..+-|-+|+.+.+..+++..+ .
T Consensus 221 ~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~ 300 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR 300 (366)
T ss_pred hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC
Confidence 1223455666666655444431 11111111223444443321 123456788876655555544 5
Q ss_pred CCcEEEEEccCCcccccccc
Q 042883 534 TNEVFVYHKAISKPAASHRF 553 (597)
Q Consensus 534 d~~i~iwd~~~~~~~~~~~~ 553 (597)
.+...+||..+|..+.....
T Consensus 301 GN~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 301 GNRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred CCeEEEEEcCCCcEEecccc
Confidence 56788999999988766554
No 436
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.16 E-value=0.17 Score=46.18 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=107.4
Q ss_pred CceeEEEEecCCCCEEEEeeCCC--cEEEEeCCCCeeeeEEeecc-ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEE
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDG--IVTIWDVTTSQSVMEYEEHE-KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i 455 (597)
...-++.|.. ++.++-+.+.-| .|+.+|+.+++......-.. ----.++.. ++.++.-.- .++...+
T Consensus 45 aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTW-------k~~~~f~ 114 (264)
T PF05096_consen 45 AFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTW-------KEGTGFV 114 (264)
T ss_dssp -EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEES-------SSSEEEE
T ss_pred ccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEe-------cCCeEEE
Confidence 3455777854 567777776666 69999999998765543211 112233333 223333333 2445899
Q ss_pred EEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCC--C---ceeEEEEeecCCEEEE
Q 042883 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHT--N---EKNFVGLTVNNEYIAC 530 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~---~v~~v~~s~~g~~l~~ 530 (597)
||..+ .+.+.++.- .+.=+.++.. +..|+.+.....++++|..+.+....+.-.. . .++-+-|- +|.+.|=
T Consensus 115 yd~~t-l~~~~~~~y-~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNT-LKKIGTFPY-PGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTT-TEEEEEEE--SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred Ecccc-ceEEEEEec-CCcceEEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 99987 667777653 3445677733 3445555556689999998877776665321 1 23445553 6666665
Q ss_pred EeCCCcEEEEEccCCccccccccCCCCCC----CcCcCCCcceEEEEEccCCCeEEEec
Q 042883 531 GSETNEVFVYHKAISKPAASHRFGSDADH----VDDDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
.-....|...|..+|+....+.+...... ........-.++|||+|.+..|...|
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66677788888888887766544321100 00001156799999998776655444
No 437
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.16 E-value=0.00029 Score=45.74 Aligned_cols=40 Identities=20% Similarity=0.618 Sum_probs=32.5
Q ss_pred ccccccc--ccccccccccc-----ccccHHHHHHhhcCCC--CCCCCC
Q 042883 40 LCPICKQ--LMTDAFMTACG-----HSFCYTCIFTHLRNKS--DCPCCG 79 (597)
Q Consensus 40 ~C~IC~~--~f~~P~~l~Cg-----H~FC~~Cl~~~~~~~~--~CP~Cr 79 (597)
.|.||++ .-.+|...||. |.|-..||.+|+.... .||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 34467888985 8899999999997654 599995
No 438
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.16 E-value=7e-05 Score=53.04 Aligned_cols=48 Identities=23% Similarity=0.655 Sum_probs=23.1
Q ss_pred CCccccccccccc-c---c--ccc--cccccccHHHHHHhhcCC-----------CCCCCCCCCCcc
Q 042883 37 RDTLCPICKQLMT-D---A--FMT--ACGHSFCYTCIFTHLRNK-----------SDCPCCGCHLTC 84 (597)
Q Consensus 37 ~~l~C~IC~~~f~-~---P--~~l--~CgH~FC~~Cl~~~~~~~-----------~~CP~Cr~~~~~ 84 (597)
+++.|+||..++. + | +.- .|++.|-..||.+|+... +.||.|++.+..
T Consensus 1 ~~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 1 QELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp ---S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4688999999876 2 3 222 599999999999998621 139999987753
No 439
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0022 Score=63.77 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=72.5
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEec-CCCcee-EEEEecCCCCEEEEeeCCCcEEEE
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP-TRSKLS-CLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~i~-~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
...|.-+.|+|.-.+||++..+|.|.++.++- ..+...+ +...++ +++|.| +|+.|++|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEE
Confidence 44678899999999999999999998888762 2333333 455566 999999 79999999999999999
Q ss_pred eCCCCeeeeEE-eeccceeEEEEeCC
Q 042883 407 DVTTSQSVMEY-EEHEKRAWSVDFSC 431 (597)
Q Consensus 407 d~~~~~~~~~~-~~~~~~v~~~~~~~ 431 (597)
|+.++..+..+ .....+|..+-|.+
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 99998776653 23345677777764
No 440
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.00048 Score=59.71 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=66.2
Q ss_pred EeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE-ecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCC-C
Q 042883 438 VSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK-FLSN-NELASASTDSSLRLWDVKENLPLHTFRGHT-N 514 (597)
Q Consensus 438 ~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~-~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~ 514 (597)
+.++.+-.+|+.+|.|++|.....+.....+..-...|..+. ...+ .+..++..||.|+.|++.-++.+.....|. .
T Consensus 67 ~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 67 VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 333333333446777999988743333322222223333332 2222 478889999999999999888877777676 4
Q ss_pred ceeEEEEeecCCEEEEE--eCCCcEEEEEccC
Q 042883 515 EKNFVGLTVNNEYIACG--SETNEVFVYHKAI 544 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~--~~d~~i~iwd~~~ 544 (597)
++.....+..+.+++.+ |.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555555666677666 7777777777654
No 441
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0028 Score=66.97 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=75.6
Q ss_pred CeEEEeeCCCcEEEEEcCCC-cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 484 NELASASTDSSLRLWDVKEN-LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
..++.|+..|.|-..|++.. .+...=..-.++|++++|+.+|..++.|-.+|.|.+||...+++...+.....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a------ 173 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA------ 173 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC------
Confidence 56888888999999998763 22222233467899999999999999999999999999999999887765421
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
....|.-+.|..++..++++..-|. +|.+
T Consensus 174 --p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 --PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred --ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 1233444556666777888887776 6664
No 442
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.16 Score=46.51 Aligned_cols=191 Identities=9% Similarity=0.117 Sum_probs=108.7
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+-...|.++.|+|+.+.|++..+...-.||=...+ .-.. ..........-+|.|.. ++.++++--.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G-dlir-----tiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG-DLIR-----TIPLTGFSDPETIEYIG-GNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCC-ceEE-----EecccccCChhHeEEec-CCEEEEEehhcceEE
Confidence 4455556999999999988888877666656543333 1000 01111223344567775 566666667788888
Q ss_pred EEeCCCCeeeeEE----------eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc--eeeeccCC
Q 042883 405 IWDVTTSQSVMEY----------EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP--LHVFNGHK 472 (597)
Q Consensus 405 iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~ 472 (597)
++.+..+..+..+ ...+...-.++|.|.+..++++--.+- +.||........ +.....+.
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--------~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--------IGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--------cEEEEEecCCcccccccccCcc
Confidence 8877654222111 112556789999997767766654322 455554431211 11111222
Q ss_pred -------CceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCCCC---------ceeEEEEeecCCEEEEE
Q 042883 473 -------KAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGHTN---------EKNFVGLTVNNEYIACG 531 (597)
Q Consensus 473 -------~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---------~v~~v~~s~~g~~l~~~ 531 (597)
..|+++.|++. ..++-+..++.+.-.|.. |.++..+.-+.+ ..-.|+.+++|.+.+++
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 35778888876 556667778888878865 444444331111 23457777777655444
No 443
>PHA03098 kelch-like protein; Provisional
Probab=97.01 E-value=0.025 Score=59.53 Aligned_cols=188 Identities=10% Similarity=-0.019 Sum_probs=91.7
Q ss_pred CCCEEEEeeCCC------cEEEEeCCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC
Q 042883 390 TKNLIASSDYDG------IVTIWDVTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI 461 (597)
Q Consensus 390 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~ 461 (597)
++.+++.|+.++ .+..||..++..... +....... +++.. ++.+++.||.++. ..-..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~--~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF--NNRIYVIGGIYNS--ISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE--CCEEEEEeCCCCC--EecceEEEEcCCCC
Confidence 466777776543 577888877655321 11111112 22222 6678888876532 12345888998762
Q ss_pred Ccce-eeeccCCCceEEEEecCCCeEEEeeCC------CcEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEEe
Q 042883 462 SQPL-HVFNGHKKAVSYVKFLSNNELASASTD------SSLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 462 ~~~~-~~~~~~~~~v~~v~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
.... ..+...... .+++...+..++.||.+ +.+..||+.+++-.. .+...... ..+...++.+++.||
T Consensus 369 ~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG 445 (534)
T PHA03098 369 KWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIYHDGKIYVIGG 445 (534)
T ss_pred ceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEEECCEEEEECC
Confidence 2111 111111111 12233334556666632 358889987643221 11111111 112334667777776
Q ss_pred CCC--------cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc-----ccEEEEEec
Q 042883 533 ETN--------EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK-----GAIKVLVLA 596 (597)
Q Consensus 533 ~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d-----g~v~iwd~~ 596 (597)
.++ .+.+||..+++-...-..+. . ......+.+ ++..++.||.+ +.|.+||+.
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNF----P-----RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCc----c-----cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence 432 38889987765433221110 0 111112223 56677777654 467788764
No 444
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.13 Score=46.67 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=119.3
Q ss_pred eEEEEecCCCCEEEEeeCCCc-EEEEeCCCCeeeeEEeeccce--eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEc
Q 042883 382 SCLSWNKYTKNLIASSDYDGI-VTIWDVTTSQSVMEYEEHEKR--AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDL 458 (597)
Q Consensus 382 ~~v~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~ 458 (597)
..++++|....-++.+-.-|+ ..++|..+.+...++....+. .-.-.|+| ++.+|...-.|.. ..-|.|-|||.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd--~~rGViGvYd~ 147 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFD--PNRGVIGVYDA 147 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCC--CCCceEEEEec
Confidence 357777755666666665564 557888777655544321111 11246898 8888776655442 24577999999
Q ss_pred cCCCcceeeeccCCCceEEEEecCCCeEEEeeCC-------------------CcEEEEEcCCCcceeeee----CCCCc
Q 042883 459 RNISQPLHVFNGHKKAVSYVKFLSNNELASASTD-------------------SSLRLWDVKENLPLHTFR----GHTNE 515 (597)
Q Consensus 459 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d-------------------~~v~iwd~~~~~~~~~~~----~~~~~ 515 (597)
+..-+.+..+..|.-....|.|.+|+.++++... -++.+.|..+|..+.+.. -+...
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 9767778888888877888999999554332221 124445555555554332 23446
Q ss_pred eeEEEEeecCCEEEEEeCCC-----cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-Cccc
Q 042883 516 KNFVGLTVNNEYIACGSETN-----EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGA 589 (597)
Q Consensus 516 v~~v~~s~~g~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~ 589 (597)
+..++..+||..++.+-..| --.+=-...++++..+..+..... .-...|-+|+.+.+..+++..+ ..+.
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~----~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA----AFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH----HHHhhhhheeecccCCeEEEecCCCCe
Confidence 77788888887766553322 111222223444443333210000 0033566777776555555444 4455
Q ss_pred EEEEEecC
Q 042883 590 IKVLVLAA 597 (597)
Q Consensus 590 v~iwd~~~ 597 (597)
..+||..+
T Consensus 304 ~vi~da~t 311 (366)
T COG3490 304 AVIWDAAT 311 (366)
T ss_pred EEEEEcCC
Confidence 67888654
No 445
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.96 E-value=0.31 Score=44.99 Aligned_cols=230 Identities=7% Similarity=0.051 Sum_probs=127.7
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEec------CCCceeEEEEecCCCC------------
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP------TRSKLSCLSWNKYTKN------------ 392 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~------~~~~i~~v~~~~~~~~------------ 392 (597)
.-+.|+|+|.+.+-++....+...+||.......... ........ .....+.+.|+. ...
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-DPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCc-cceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence 4578999999988888888899999998732111000 11122221 235688888885 222
Q ss_pred EEEEeeCCCcEEEEeCCCCee-----eeEEee-cccee-EEEEeCCC-CCceEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 393 LIASSDYDGIVTIWDVTTSQS-----VMEYEE-HEKRA-WSVDFSCT-EPSMLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 393 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~-~~~~v-~~~~~~~~-~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
.++.++.||+|.-|...-+.. ...+.. ....| ..+++... .+.+|..+.. .+++|.+||-.- .+
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF------~~g~IDVFd~~f--~~ 173 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF------RQGRIDVFKGSF--RP 173 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc------CCCceEEecCcc--cc
Confidence 256677899999998532221 112221 12333 34555432 2455554432 356699998653 22
Q ss_pred eeeeccCCCc-------eEEE---------Ee---cCC-CeEEEeeCCCcEEEEEcCCCcceeeee--CCCCceeEEEEe
Q 042883 465 LHVFNGHKKA-------VSYV---------KF---LSN-NELASASTDSSLRLWDVKENLPLHTFR--GHTNEKNFVGLT 522 (597)
Q Consensus 465 ~~~~~~~~~~-------v~~v---------~~---~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~v~~s 522 (597)
+..-....++ ...+ .| .++ ..=+.|..-|.|-+||+. +..++.+. +.-+..+.|+..
T Consensus 174 ~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeC
Confidence 2110000010 1111 11 111 112233444789999976 77777764 334456778876
Q ss_pred e------cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 523 V------NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 523 ~------~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
| .|.+|+.--.||+|-.||..+++.+..+....-... -...+++++|..
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi-----~i~GLWgL~fGn 307 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV-----KVDGLWSLTFGN 307 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE-----EecCeEEeeeCC
Confidence 6 356666555699999999998887665554321000 134578888865
No 446
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.96 E-value=0.0003 Score=65.16 Aligned_cols=47 Identities=30% Similarity=0.841 Sum_probs=40.7
Q ss_pred ccccccccccccccccccccccHHHHHHhhcCC--CCCCCCCCCCcccc
Q 042883 40 LCPICKQLMTDAFMTACGHSFCYTCIFTHLRNK--SDCPCCGCHLTCKH 86 (597)
Q Consensus 40 ~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~--~~CP~Cr~~~~~~~ 86 (597)
.|-||-|-=+|-++=||||..|-.||..|-... ..||.||......+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 399999999999999999999999999887544 45999999887654
No 447
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00032 Score=48.13 Aligned_cols=45 Identities=29% Similarity=0.711 Sum_probs=35.4
Q ss_pred cccccccccc-----------c-ccccc-ccccccHHHHHHhhcCCC---CCCCCCCCCcc
Q 042883 40 LCPICKQLMT-----------D-AFMTA-CGHSFCYTCIFTHLRNKS---DCPCCGCHLTC 84 (597)
Q Consensus 40 ~C~IC~~~f~-----------~-P~~l~-CgH~FC~~Cl~~~~~~~~---~CP~Cr~~~~~ 84 (597)
+|-||--.|. | |..+. |.|.|-..||.+|+.... .||.||+....
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 6777776666 2 66665 999999999999998553 39999998754
No 448
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.95 E-value=0.0013 Score=40.04 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 565 GSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 565 h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
|...|+++.|++.+.++++++.||.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 467899999999999999999999999996
No 449
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.94 E-value=0.15 Score=48.27 Aligned_cols=199 Identities=10% Similarity=0.092 Sum_probs=106.7
Q ss_pred EEEEcCCCCEEEEee--CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC-C
Q 042883 334 SIEFDRDDELFASAG--VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT-T 410 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~-~ 410 (597)
.++++.||+++++.. -...|.|.|+... .......-.+ |.-..|.++.-+.+-+.||.+.-..+. .
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--------kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAK--------KVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTT--------EEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCC--------ceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCC
Confidence 446777777766543 3456777777654 2222222111 233334345567788889999988887 4
Q ss_pred CeeeeEEe----eccceeE-EEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc-ceeeeccC----------CCc
Q 042883 411 SQSVMEYE----EHEKRAW-SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ-PLHVFNGH----------KKA 474 (597)
Q Consensus 411 ~~~~~~~~----~~~~~v~-~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~-~~~~~~~~----------~~~ 474 (597)
|+...... ....++. .-++...++.++. -+.+|.|+-.|+..... ....+... .+.
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F--------~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF--------VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEE--------EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEE--------EecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 54432211 0111111 1112211222222 13567788888875221 11111100 122
Q ss_pred eEEEEecCC-CeEEEe---eCCC-------cEEEEEcCCCcceeeeeCCCCceeEEEEeecCC-EEEEE-eCCCcEEEEE
Q 042883 475 VSYVKFLSN-NELASA---STDS-------SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE-YIACG-SETNEVFVYH 541 (597)
Q Consensus 475 v~~v~~~~~-~~l~s~---~~d~-------~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~-~~d~~i~iwd 541 (597)
-.-+++++. ++|++- +.++ .|-+||+.+++.+..+.. ..++.+|.++.+.+ +|++. ..++.|.+||
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 344677766 665542 1222 388889999999998874 34577999998865 66544 4579999999
Q ss_pred ccCCccccccc
Q 042883 542 KAISKPAASHR 552 (597)
Q Consensus 542 ~~~~~~~~~~~ 552 (597)
..+|+.+..+.
T Consensus 319 ~~tGk~~~~~~ 329 (342)
T PF06433_consen 319 AATGKLVRSIE 329 (342)
T ss_dssp TTT--EEEEE-
T ss_pred CcCCcEEeehh
Confidence 99999887765
No 450
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00044 Score=64.04 Aligned_cols=46 Identities=24% Similarity=0.573 Sum_probs=40.3
Q ss_pred Ccccccccccccccccccccccc-cHHHHHHhhcCCCCCCCCCCCCc
Q 042883 38 DTLCPICKQLMTDAFMTACGHSF-CYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~F-C~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
...|=||+.--+|-++|||-|.- |..|.+.+--....||+||+.+.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 47899999999999999999975 99999877655567999999875
No 451
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.93 E-value=0.039 Score=42.64 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=64.5
Q ss_pred EEEEEEcC---CC-CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 332 ISSIEFDR---DD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 332 v~~i~~~~---~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
|+++++.. +| +.|++|+.|..|+||+-.. ..........|+.+.-.. ...++.+..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------IVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----------EEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEe
Confidence 56666654 33 5799999999999998543 344455567888888775 57799999999999997
Q ss_pred CCCCeeeeEEeeccceeEEEEeCC---CCCceEEeecCCCc
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSC---TEPSMLVSGSDDCK 445 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~ 445 (597)
- ...+..++... .+.++.+.. ++-.-|++|-.+|.
T Consensus 70 ~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 70 R--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred C--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCe
Confidence 5 33444444322 355554432 12235677665554
No 452
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.92 E-value=0.15 Score=52.72 Aligned_cols=153 Identities=12% Similarity=0.124 Sum_probs=89.5
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeeEEeeccc------eeE--EEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC
Q 042883 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEK------RAW--SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462 (597)
Q Consensus 391 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~ 462 (597)
+..++.++.++.|.-+|..+|+.+..+..... .+. .+++. ++..++.++ .++.|+-+|.++ +
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~-------~~g~v~AlD~~T-G 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGT-------FDGRLVALDAET-G 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEec-------CCCeEEEEECCC-C
Confidence 34566777789999999999988766643221 000 11111 213444444 355689999987 5
Q ss_pred cceeeeccCCC--ceEEEEecC---CCeEEEee---------CCCcEEEEEcCCCcceeeeeCCCC--------------
Q 042883 463 QPLHVFNGHKK--AVSYVKFLS---NNELASAS---------TDSSLRLWDVKENLPLHTFRGHTN-------------- 514 (597)
Q Consensus 463 ~~~~~~~~~~~--~v~~v~~~~---~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~~-------------- 514 (597)
+.+-.+..... .-..+.-+| ++.++.++ .++.|.-+|..+|+.+-.+.....
T Consensus 131 ~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~ 210 (488)
T cd00216 131 KQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQM 210 (488)
T ss_pred CEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcce
Confidence 55544432211 001111122 25565554 367899999999987766643211
Q ss_pred ------ce-eEEEEeecCCEEEEEeCCC------------------cEEEEEccCCcccccccc
Q 042883 515 ------EK-NFVGLTVNNEYIACGSETN------------------EVFVYHKAISKPAASHRF 553 (597)
Q Consensus 515 ------~v-~~v~~s~~g~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~ 553 (597)
.+ ...++++.+..++.++.++ .|.-+|..+|+.+-.+..
T Consensus 211 ~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 211 WGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred ecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 01 1245555566777776554 799999999998876654
No 453
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00041 Score=64.25 Aligned_cols=48 Identities=27% Similarity=0.762 Sum_probs=37.2
Q ss_pred cCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
........|-||++-+.+.+-+||||.-| |..- -.....||+||+...
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHH-HhhCCCCchhHHHHH
Confidence 34555678999999999999999999977 7643 233345999998764
No 454
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.87 E-value=0.26 Score=46.69 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=87.2
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee--
Q 042883 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-- 467 (597)
Q Consensus 390 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-- 467 (597)
.++.|+.|..+| +.+|+.........+. +...|..+...| .-+.+++-+ |+.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS--------DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc--------CCccEEEEchhhcccccccc
Confidence 467899998888 9999983322222221 233499999998 445554443 456999998752211100
Q ss_pred -----------eccCCCceEEEE--ecCC-CeEEEeeCCCcEEEEEcCCC-----cceeeeeCCCCceeEEEEeecCCEE
Q 042883 468 -----------FNGHKKAVSYVK--FLSN-NELASASTDSSLRLWDVKEN-----LPLHTFRGHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 468 -----------~~~~~~~v~~v~--~~~~-~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~v~~s~~g~~l 528 (597)
.......+...+ -... ...+......+|.+|.+... +..+.+.- ...+..++|. ++.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKI 151 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEE
Confidence 011222344444 1112 44445555568999888653 34455443 4667888887 6677
Q ss_pred EEEeCCCcEEEEEccCCcccccc
Q 042883 529 ACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 529 ~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
+.|..+ ...+.|+.++......
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEe
Confidence 777644 4888999877665444
No 455
>PHA03098 kelch-like protein; Provisional
Probab=96.85 E-value=0.063 Score=56.47 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=74.3
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC
Q 042883 390 TKNLIASSDYD-----GIVTIWDVTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462 (597)
Q Consensus 390 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~ 462 (597)
++.+++.||.+ ..+..||..+++.... +...... .+++.. ++.+++.||.+.. +..-+.+..||+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~-~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNV--NNLIYVIGGISKN-DELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCC-CcccceEEEEeCCCCe
Confidence 56788888765 3477888876654321 1111111 122222 5677777774321 0112458899987622
Q ss_pred cc-eeeeccCCCceEEEEecCCCeEEEeeCC--------CcEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEE
Q 042883 463 QP-LHVFNGHKKAVSYVKFLSNNELASASTD--------SSLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACG 531 (597)
Q Consensus 463 ~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~ 531 (597)
.. +..+...... .+++...+..++.||.+ ..+.+||..+++-.. .+.........+ ..++.+++.|
T Consensus 418 W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~G 494 (534)
T PHA03098 418 WSKGSPLPISHYG-GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC--IFNNKIYVVG 494 (534)
T ss_pred eeecCCCCccccC-ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE--EECCEEEEEc
Confidence 11 1111111111 12233333555666643 238889987654322 111111111122 2367777777
Q ss_pred eCC-----CcEEEEEccCCcc
Q 042883 532 SET-----NEVFVYHKAISKP 547 (597)
Q Consensus 532 ~~d-----~~i~iwd~~~~~~ 547 (597)
|.+ +.|.+||..+..-
T Consensus 495 G~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCcCCcccceeEEEeCCCCEE
Confidence 754 4688888776654
No 456
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.83 E-value=0.13 Score=53.96 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=96.6
Q ss_pred CCCcEEEEEEcCCCCEEEEee------CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC--
Q 042883 328 AANIISSIEFDRDDELFASAG------VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-- 399 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-- 399 (597)
....+.+.+++|+|+.++... .|..-.||-...+. ...+ .. . ....+.-.|+| ++..|++...
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----~~~~-lt-~-g~~~t~PsWsp-DG~~lw~v~dg~ 418 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----VAVQ-VL-E-GHSLTRPSWSL-DADAVWVVVDGN 418 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----ccee-ee-c-CCCCCCceECC-CCCceEEEecCc
Confidence 334678999999999887665 24444455433220 0111 11 1 12377788999 5555555432
Q ss_pred ----------CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc--CCCc-ce-
Q 042883 400 ----------DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR--NISQ-PL- 465 (597)
Q Consensus 400 ----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~--~~~~-~~- 465 (597)
.+.+.+.++..+.... .....|..+.|+| ++..++... ++.|++--+. ..+. .+
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~--------~g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII--------GGKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE--------CCEEEEEEEEeCCCCceeec
Confidence 2233333444433322 2345799999999 665554433 2336652221 1122 11
Q ss_pred --eee-ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCC-CcceeeeeC--CCCceeEEEEeecCCEEEEEeCCCcEE
Q 042883 466 --HVF-NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE-NLPLHTFRG--HTNEKNFVGLTVNNEYIACGSETNEVF 538 (597)
Q Consensus 466 --~~~-~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~i~ 538 (597)
..+ .+-...+.++.|.+++.|+++..++...+|.+.- |.....+.. ....+..|+-++ .-|+++..+|.+.
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~ 563 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQ 563 (591)
T ss_pred ccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--ceEEEEcCCceEE
Confidence 112 2223346889999997777776665555555432 222112222 244555666554 2455555666333
No 457
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0061 Score=54.70 Aligned_cols=58 Identities=22% Similarity=0.598 Sum_probs=41.5
Q ss_pred cccccc-cccccc----ccccccccccHHHHHHhhc-CCCCCCCCCCCCccccccchHHHHHHH
Q 042883 40 LCPICK-QLMTDA----FMTACGHSFCYTCIFTHLR-NKSDCPCCGCHLTCKHIFPNLLLNKLL 97 (597)
Q Consensus 40 ~C~IC~-~~f~~P----~~l~CgH~FC~~Cl~~~~~-~~~~CP~Cr~~~~~~~l~~n~~~~~~~ 97 (597)
.||+|. +.|.+| .+-+|||+.|..|.-+... +...||.|...+....++....=..++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q~fED~~v 65 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQTFEDPTV 65 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchhhcchhHH
Confidence 499996 567777 2227999999999998876 445699999888766665433333333
No 458
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.79 E-value=0.4 Score=49.87 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 493 SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 493 ~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
|.|.-||+.+++..-..........+. +.-.|.+++.++.+|.++.+|..+|+.+.....+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457777888777666554222111121 2235567777888999999999999999887764
No 459
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.72 E-value=0.0011 Score=61.37 Aligned_cols=54 Identities=22% Similarity=0.549 Sum_probs=42.8
Q ss_pred CCCCcccccccccccc--c-cc-ccccccccHHHHHHhhcCCCCCCCCCCCCccccccc
Q 042883 35 VDRDTLCPICKQLMTD--A-FM-TACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89 (597)
Q Consensus 35 ~~~~l~C~IC~~~f~~--P-~~-l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~ 89 (597)
-...+.|||....|.. + |. .||||.|+..+|...- ....||+|.+++...++.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 4556899999999964 2 44 4899999999999884 3456999999999877553
No 460
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.72 E-value=0.00058 Score=71.29 Aligned_cols=47 Identities=34% Similarity=0.865 Sum_probs=40.5
Q ss_pred cccccccccccccccccccccccHHHHHHhhcCCC--CCCCCCCCCcccc
Q 042883 39 TLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS--DCPCCGCHLTCKH 86 (597)
Q Consensus 39 l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~--~CP~Cr~~~~~~~ 86 (597)
..|+||++ ...|+..+|||.||..|+...++... .||.||.......
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 88889999999999999999998553 4999998776544
No 461
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0008 Score=61.38 Aligned_cols=49 Identities=37% Similarity=0.765 Sum_probs=44.7
Q ss_pred CCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 35 VDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 35 ~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
-.|+-.||||.---...|..||||--|+.||.+.+-....|=.|+..+.
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3567889999999999999999999999999999999999999988776
No 462
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.68 E-value=0.49 Score=43.25 Aligned_cols=184 Identities=10% Similarity=0.158 Sum_probs=103.6
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCC--cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSR--RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.......+.|..+|.++-+.+.-| .|+.+|+.++... ..........--+++.. ++.++...-.++...+
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~------~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL------QSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE------EEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE------EEEECCccccceeEEEE--CCEEEEEEecCCeEEE
Confidence 345566888977887777776655 6889998887110 11122222233345554 3455556667899999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--C---CCceEEEEe
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--H---KKAVSYVKF 480 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--~---~~~v~~v~~ 480 (597)
||..+-+.+.++.- .+.=+.++.. +..++.|-|. ..|+++|..+ .+....+.- . -..++-+-|
T Consensus 115 yd~~tl~~~~~~~y-~~EGWGLt~d--g~~Li~SDGS--------~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY-PGEGWGLTSD--GKRLIMSDGS--------SRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEEEC--SSCEEEE-SS--------SEEEEE-TTT--SEEEEEE-EETTEE---EEEEEE
T ss_pred EccccceEEEEEec-CCcceEEEcC--CCEEEEECCc--------cceEEECCcc-cceEEEEEEEECCEECCCcEeEEE
Confidence 99999888888853 4567888843 4455555442 3489999876 333433321 1 123455555
Q ss_pred cCCCeEEE-eeCCCcEEEEEcCCCcceeeee---------------CCCCceeEEEEeecCCEEEEEe
Q 042883 481 LSNNELAS-ASTDSSLRLWDVKENLPLHTFR---------------GHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 481 ~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~---------------~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
.. +.|.+ .=....|...|..+|+++..+. ......+.|+++|.+..+.+.|
T Consensus 183 i~-G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 183 IN-GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ET-TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred Ec-CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 43 33333 3344567777887777666542 0134678999999866554443
No 463
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00095 Score=63.87 Aligned_cols=49 Identities=31% Similarity=0.722 Sum_probs=38.1
Q ss_pred CCCCcccccccccccc-----c------------ccccccccccHHHHHHhhcCCC-CCCCCCCCCc
Q 042883 35 VDRDTLCPICKQLMTD-----A------------FMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLT 83 (597)
Q Consensus 35 ~~~~l~C~IC~~~f~~-----P------------~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~ 83 (597)
++..--|+||+....- | ...||-|.|-+.||++|..+.. .||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3445669999976541 1 2348999999999999999776 6999998865
No 464
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.67 E-value=0.023 Score=56.13 Aligned_cols=147 Identities=12% Similarity=0.149 Sum_probs=82.8
Q ss_pred ceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc
Q 042883 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR 459 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~ 459 (597)
.|+.+.|.+ ....|++|...|.|.||.....+... .....+-....+.+ +--. ++.-.+-|+.
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~-----~~~~---------~~~~~l~di~ 65 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR-----FSLN---------NSPGKLTDIS 65 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE--------------------S-------GG---------GSS-SEEE-G
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc-----cccc---------CCCcceEEeh
Confidence 578899998 67789999999999999875433221 00011111111111 0000 0011233332
Q ss_pred C--------CCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeee--C------CCCceeEEEEee
Q 042883 460 N--------ISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFR--G------HTNEKNFVGLTV 523 (597)
Q Consensus 460 ~--------~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~------~~~~v~~v~~s~ 523 (597)
. +-.+...+....++|++++.+.-|.+++|..+|.+.|.|+|....++.-. . ....++++.|+.
T Consensus 66 ~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v 145 (395)
T PF08596_consen 66 DRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV 145 (395)
T ss_dssp GG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE
T ss_pred hhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE
Confidence 2 11234445556789999998755999999999999999999887776632 1 223567777763
Q ss_pred -----cC---CEEEEEeCCCcEEEEEcc
Q 042883 524 -----NN---EYIACGSETNEVFVYHKA 543 (597)
Q Consensus 524 -----~g---~~l~~~~~d~~i~iwd~~ 543 (597)
|+ -.+++|+..|.+.+|.+.
T Consensus 146 m~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 146 MTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred EecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 23 368889999999999875
No 465
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.62 E-value=0.75 Score=47.90 Aligned_cols=158 Identities=10% Similarity=0.075 Sum_probs=79.0
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-EEEecCCCCEEEEee------CCCcEEEEeCCCCeee
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-LSWNKYTKNLIASSD------YDGIVTIWDVTTSQSV 414 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~ 414 (597)
..++.++.|+.|.-+|..++......... .......+++ -... ++ .++++. .+|.|.-+|..+|+.+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~---~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNG---DYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccc---cccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence 45677778888888888877322211100 0000001111 1111 23 455543 2688999999999877
Q ss_pred eEEeecc-------------------------------ceeE-EEEeCCCCCceEEeecC----CCcccCC----CCeEE
Q 042883 415 MEYEEHE-------------------------------KRAW-SVDFSCTEPSMLVSGSD----DCKVGSA----DHHIH 454 (597)
Q Consensus 415 ~~~~~~~-------------------------------~~v~-~~~~~~~~~~~l~s~~~----d~~~~~~----d~~i~ 454 (597)
..+..-. ..++ .+++.|..+.+++..+. ++..-.. ...|.
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV 274 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence 6543211 1222 23555533333332222 1111001 12566
Q ss_pred EEEccCCCcceeeecc--CCC-------ceEEEEecCC-C---eEEEeeCCCcEEEEEcCCCcce
Q 042883 455 YYDLRNISQPLHVFNG--HKK-------AVSYVKFLSN-N---ELASASTDSSLRLWDVKENLPL 506 (597)
Q Consensus 455 i~d~~~~~~~~~~~~~--~~~-------~v~~v~~~~~-~---~l~s~~~d~~v~iwd~~~~~~~ 506 (597)
-.|+++ ++..=.+.. |.. ...-+.+..+ . .++.+..+|.+++.|..+|+++
T Consensus 275 Ald~~T-G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 275 ARDPDT-GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEcccc-CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 777777 554433332 211 1111222223 2 4678999999999999998876
No 466
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.62 E-value=0.081 Score=55.37 Aligned_cols=178 Identities=11% Similarity=0.040 Sum_probs=92.0
Q ss_pred CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeec-CCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 400 DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGS-DDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
+|.+.-.+-..-..+.-..+....+.+.+++|++..+.++.. .|+. ......|.+++.. +.......+. ..+.-
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~P 402 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPLG--GVAVQVLEGH--SLTRP 402 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeCC--CcceeeecCC--CCCCc
Confidence 666655442222222222233346788999994444434332 1110 0012346666653 3332222322 36778
Q ss_pred EecCC-CeEEEeeCC------------CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEE---EEc
Q 042883 479 KFLSN-NELASASTD------------SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFV---YHK 542 (597)
Q Consensus 479 ~~~~~-~~l~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i---wd~ 542 (597)
.|+|+ +.+++.+.. +.+.+.++..+.... ...+.|..+.|||||..|+... +|.|++ -..
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeC
Confidence 89999 655555422 233333544443322 2345799999999999887765 477777 443
Q ss_pred cCCcccc--ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 543 AISKPAA--SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 543 ~~~~~~~--~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
..|.... ...... .-...+.++.|.+++.++ .+..++...+|.+
T Consensus 479 ~~G~~~l~~~~~l~~--------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 479 EDGQYALTNPREVGP--------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCCceeecccEEeec--------ccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 3443111 001110 002346789999998855 5454555556655
No 467
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.47 Score=43.56 Aligned_cols=194 Identities=7% Similarity=0.066 Sum_probs=112.5
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeec-cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEH-EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
...+.++.|+| +.+.|++..+...-.||=...|+.+.++.-. -...-.|.+.. ++.+.++--.+ +.++++
T Consensus 85 ~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~-------~~l~~~ 155 (316)
T COG3204 85 TANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERD-------RALYLF 155 (316)
T ss_pred cccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhc-------ceEEEE
Confidence 45599999999 5566666665666666666678888877421 23455677775 66666665543 447777
Q ss_pred EccCCCcc---------eeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceee---eeCC-------CCce
Q 042883 457 DLRNISQP---------LHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHT---FRGH-------TNEK 516 (597)
Q Consensus 457 d~~~~~~~---------~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~-------~~~v 516 (597)
.+...... +......+...-.++|.|. +.|+.+-.-.-+.||.+..+..... ...+ -..+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 66542111 1111222567889999999 7788888877888887664321111 1111 2246
Q ss_pred eEEEEeec-CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 517 NFVGLTVN-NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 517 ~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
+++.|++. +..++-+..++.+.-.|.. |.++..+....-..... +.-...-+|+.+++|.+.++
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~--~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLS--SDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCc--ccCCCcceeEECCCCCEEEE
Confidence 67788865 5666667777777777764 33333332211000000 01223456888877765444
No 468
>PHA02790 Kelch-like protein; Provisional
Probab=96.55 E-value=0.12 Score=53.37 Aligned_cols=182 Identities=7% Similarity=-0.078 Sum_probs=88.9
Q ss_pred CCCEEEEeeCCC-----cEEEEeCCCCeeee--EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC
Q 042883 390 TKNLIASSDYDG-----IVTIWDVTTSQSVM--EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462 (597)
Q Consensus 390 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~ 462 (597)
++.++++|+.++ .+..||..++.... .+....... +++.. ++.+.+.||.++. ..+..||...+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~--~~~iYviGG~~~~-----~sve~ydp~~n~ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPA--NNKLYVVGGLPNP-----TSVERWFHGDAA 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEE--CCEEEEECCcCCC-----CceEEEECCCCe
Confidence 456667776543 46678887765432 221111112 22222 6788888876432 347888876521
Q ss_pred c-ceeeeccCCCceEEEEecCCCeEEEeeCCC---cEEEEEcCCCcceee--eeCCCCceeEEEEeecCCEEEEEeCCCc
Q 042883 463 Q-PLHVFNGHKKAVSYVKFLSNNELASASTDS---SLRLWDVKENLPLHT--FRGHTNEKNFVGLTVNNEYIACGSETNE 536 (597)
Q Consensus 463 ~-~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~--~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 536 (597)
. .+..+...... .+++...+..++.||.++ .+..||..+.+-... ....... ..+..-+|.+++.|+ .
T Consensus 343 W~~~~~l~~~r~~-~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~GG---~ 416 (480)
T PHA02790 343 WVNMPSLLKPRCN-PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVGR---N 416 (480)
T ss_pred EEECCCCCCCCcc-cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEECC---c
Confidence 1 11111111111 123333345567777553 477888876432221 1111111 122234677667664 5
Q ss_pred EEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc-----ccEEEEEec
Q 042883 537 VFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK-----GAIKVLVLA 596 (597)
Q Consensus 537 i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d-----g~v~iwd~~ 596 (597)
+.+||..+++-...-.... . ......+.+ +|+.++.||.+ ..|..||..
T Consensus 417 ~e~ydp~~~~W~~~~~m~~----~-----r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIY----P-----RDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred eEEecCCCCcEeEcCCCCC----C-----ccccEEEEE--CCEEEEECCcCCCcccceEEEEECC
Confidence 7789887665432222110 0 111222233 56777777754 357777764
No 469
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.54 E-value=0.15 Score=49.75 Aligned_cols=203 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCEEEEe-eCCCcEEEEeCCCC----eeeeEEee---cc----ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEc
Q 042883 391 KNLIASS-DYDGIVTIWDVTTS----QSVMEYEE---HE----KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDL 458 (597)
Q Consensus 391 ~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~ 458 (597)
.++|+.. -.++.|+|+|+.+. +..+.+.. +. +....+-..| ++.+++++=.|.. |..-|.+.++|-
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~-G~g~Ggf~llD~ 164 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDAD-GNGPGGFVLLDG 164 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETT-S-S--EEEEE-T
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCC-CCCCCcEEEEcC
Confidence 4555554 47789999998743 44444442 11 2233344455 7777777543322 234566778887
Q ss_pred cCCCcceeeeccC---CCceEEEEecCC-CeEEEeeC--------------------CCcEEEEEcCCCcceeeeeCCCC
Q 042883 459 RNISQPLHVFNGH---KKAVSYVKFLSN-NELASAST--------------------DSSLRLWDVKENLPLHTFRGHTN 514 (597)
Q Consensus 459 ~~~~~~~~~~~~~---~~~v~~v~~~~~-~~l~s~~~--------------------d~~v~iwd~~~~~~~~~~~~~~~ 514 (597)
.+ .......... ..--..+.|.|. +.++|... ..++.+||+.+.+.++++.--..
T Consensus 165 ~t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ET-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cc-ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 65 3444444321 223456777787 77777542 36799999999999999873322
Q ss_pred --ceeEEEEeec--CCE-EEEEeCCCcEEEEEc-cCCccc--cccccCCCCCCCcC--------cCCCcceEEEEEccCC
Q 042883 515 --EKNFVGLTVN--NEY-IACGSETNEVFVYHK-AISKPA--ASHRFGSDADHVDD--------DMGSYFISAVCWKSDS 578 (597)
Q Consensus 515 --~v~~v~~s~~--g~~-l~~~~~d~~i~iwd~-~~~~~~--~~~~~~~~~~~~~~--------~~h~~~i~~v~~~~~~ 578 (597)
.+.-|.|..+ ..+ ++.+-..+.|..|-. ..++-. ..+..+........ ..-..-|++|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2445666544 333 222224455555543 333211 11111110000000 0002347999999999
Q ss_pred CeEEEec-CcccEEEEEec
Q 042883 579 PTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 579 ~~l~s~~-~dg~v~iwd~~ 596 (597)
++|...+ .+|.|+.|||+
T Consensus 324 rfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -EEEEEETTTTEEEEEE-S
T ss_pred CEEEEEcccCCcEEEEecC
Confidence 9987655 69999999985
No 470
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.53 E-value=0.042 Score=53.69 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=97.6
Q ss_pred CCCEEE-EeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee
Q 042883 390 TKNLIA-SSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF 468 (597)
Q Consensus 390 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~ 468 (597)
+.++|+ .|+....++-.|+..|+.+.....|..- -+.|.|. ..+---......||..+..|.-.|.+..+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~-~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPY-FKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCc-hhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 455554 4555567888889999999888766653 5677773 22111111111224456667888888756444432
Q ss_pred cc----CCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEcc
Q 042883 469 NG----HKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKA 543 (597)
Q Consensus 469 ~~----~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 543 (597)
.. .....++..-..+|+++++|..|.|++||.-.-+....+++....|..|..+.+|.+|++.+. ..+.+-|++
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 21 122344444445599999999999999997655555566777888999999999998877654 567777764
No 471
>PHA02790 Kelch-like protein; Provisional
Probab=96.48 E-value=0.13 Score=53.06 Aligned_cols=143 Identities=11% Similarity=0.022 Sum_probs=70.1
Q ss_pred CCCEEEEeeCC--CcEEEEeCCCCeeee--EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce
Q 042883 390 TKNLIASSDYD--GIVTIWDVTTSQSVM--EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL 465 (597)
Q Consensus 390 ~~~~l~s~~~d--g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~ 465 (597)
++.+.++|+.+ ..+..||..++.... .+....... +++.. ++.+.+.||.++. ...+..||.++.....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~~--~g~IYviGG~~~~----~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVASI--NNVIYVIGGHSET----DTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEEE--CCEEEEecCcCCC----CccEEEEeCCCCEEEe
Confidence 57777888754 357888876654332 221111111 22222 6788888886543 2457889987622111
Q ss_pred -eeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcce--eeeeCCCCceeEEEEeecCCEEEEEeCC-----CcE
Q 042883 466 -HVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPL--HTFRGHTNEKNFVGLTVNNEYIACGSET-----NEV 537 (597)
Q Consensus 466 -~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i 537 (597)
..+....... +++. -++.|.+.| |.+.+||..+++-. ..+....... ++ ..-+|+++++||.+ ..|
T Consensus 391 ~~~m~~~r~~~-~~~~-~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 391 GPSTYYPHYKS-CALV-FGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CCCCCCccccc-eEEE-ECCEEEEEC--CceEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceE
Confidence 0111111111 2222 234444433 45778998765432 2221111111 22 22377788888754 245
Q ss_pred EEEEccCC
Q 042883 538 FVYHKAIS 545 (597)
Q Consensus 538 ~iwd~~~~ 545 (597)
..||..++
T Consensus 465 e~Yd~~~~ 472 (480)
T PHA02790 465 EVYNNRTY 472 (480)
T ss_pred EEEECCCC
Confidence 66665543
No 472
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.038 Score=59.21 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=79.4
Q ss_pred eEEEEEccCCCcce----eeeccC------CCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcc-eeeeeCCCCceeE
Q 042883 452 HIHYYDLRNISQPL----HVFNGH------KKAVSYVKFLSN--NELASASTDSSLRLWDVKENLP-LHTFRGHTNEKNF 518 (597)
Q Consensus 452 ~i~i~d~~~~~~~~----~~~~~~------~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~ 518 (597)
.|+.||++.-.... .-+..| ..-..++.|+|. -..+++..|+.|++..+..... +..+ ......++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Ta 203 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTA 203 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Ccccceee
Confidence 49999997522111 111111 234567889988 4577888899999887764322 2222 24556789
Q ss_pred EEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 519 VGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 519 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
++|+|.|+.+++|-..|++.-|...- .....+..+... ....|.+|.|-....+++.
T Consensus 204 v~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~-------e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVE-------ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred EEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcC-------CCcceeEEEEecceeEEEE
Confidence 99999999999999999999887533 222222221110 1578999999877777665
No 473
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.35 E-value=1.4 Score=44.65 Aligned_cols=165 Identities=14% Similarity=0.117 Sum_probs=87.0
Q ss_pred eeEEEEecCCCCEEEEe-eCCC----cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---cCCCCe
Q 042883 381 LSCLSWNKYTKNLIASS-DYDG----IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---GSADHH 452 (597)
Q Consensus 381 i~~v~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---~~~d~~ 452 (597)
+....++| ++++++.+ +..| .++++|+.+|+.+...-. ......+.|.+++..++.+...+... ......
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 44677889 56666654 4444 499999999977653311 11223399998444555555443221 122566
Q ss_pred EEEEEccCCCcc-eeeeccCCCc--eEEEEecCC-CeEEE-eeC--C-CcEEEEEcCCC----cceeeeeCCCCceeEEE
Q 042883 453 IHYYDLRNISQP-LHVFNGHKKA--VSYVKFLSN-NELAS-AST--D-SSLRLWDVKEN----LPLHTFRGHTNEKNFVG 520 (597)
Q Consensus 453 i~i~d~~~~~~~-~~~~~~~~~~--v~~v~~~~~-~~l~s-~~~--d-~~v~iwd~~~~----~~~~~~~~~~~~v~~v~ 520 (597)
|+.|.+.++... ...+...... ...+..+++ .+++. ... + ..+.+.|+..+ .....+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888888763322 3444443332 567888888 55443 222 2 34788888764 23333333333333333
Q ss_pred EeecCCEEEEEeC---CCcEEEEEccCCcc
Q 042883 521 LTVNNEYIACGSE---TNEVFVYHKAISKP 547 (597)
Q Consensus 521 ~s~~g~~l~~~~~---d~~i~iwd~~~~~~ 547 (597)
-+.++.+++.... ++.|.-.++.....
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred EccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence 3334444443322 35677777776553
No 474
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.23 E-value=0.0032 Score=49.09 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=41.6
Q ss_pred Cccccccccccccccccc----ccccccHHHHHHhhcCC---CCCCCCCCCCccc
Q 042883 38 DTLCPICKQLMTDAFMTA----CGHSFCYTCIFTHLRNK---SDCPCCGCHLTCK 85 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~----CgH~FC~~Cl~~~~~~~---~~CP~Cr~~~~~~ 85 (597)
--+|-||.|...|+..|. ||-+.|..|--..|+.. +.||+|+.++...
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 467999999999998884 99999999999999855 4599999998754
No 475
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.15 Score=43.91 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=97.2
Q ss_pred CCCEEEEeeC--CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee
Q 042883 390 TKNLIASSDY--DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 390 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~ 467 (597)
++.++.+.+. ...|++||+.+++.+..-.-....+..=-....+..+..-.-. +|.-..||.++ -+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~-------egvaf~~d~~t-~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK-------EGVAFKYDADT-LEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec-------cceeEEEChHH-hhhhcc
Confidence 4555555543 3469999999887665432111111110000001122222222 33367788776 444544
Q ss_pred eccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeC--CCCce---eEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 468 FNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG--HTNEK---NFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 468 ~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v---~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
+. ..+.-+.++....+ |+.++...+++.-|..+-....++.- ...+| +-+-| -+|..+|-.-.+..|...|.
T Consensus 127 ~~-y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 127 FS-YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDP 203 (262)
T ss_pred cc-cCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcC
Confidence 43 33444666643335 44444445777777665433333221 11222 22333 25666666666677778888
Q ss_pred cCCccccccccCCCCCCCc-CcCCCcceEEEEEccCCCe-EEEe
Q 042883 543 AISKPAASHRFGSDADHVD-DDMGSYFISAVCWKSDSPT-MLTA 584 (597)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~~~-l~s~ 584 (597)
.+|+.+..+.......... ...|....+.|++.|++.. +++|
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 8888887776655332222 2235678999999998854 5554
No 476
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.17 E-value=0.0042 Score=50.34 Aligned_cols=52 Identities=25% Similarity=0.620 Sum_probs=37.9
Q ss_pred CCccccccccccccccccccc-c-ccc-----------HHHHHHhhcC-------------------------------C
Q 042883 37 RDTLCPICKQLMTDAFMTACG-H-SFC-----------YTCIFTHLRN-------------------------------K 72 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~l~Cg-H-~FC-----------~~Cl~~~~~~-------------------------------~ 72 (597)
|+.+||||+|...+.|.|-|. | .=| ..||.++-.. .
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 578999999999999988765 2 223 4688876640 1
Q ss_pred CCCCCCCCCCcccccc
Q 042883 73 SDCPCCGCHLTCKHIF 88 (597)
Q Consensus 73 ~~CP~Cr~~~~~~~l~ 88 (597)
..||.||-.+..+...
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 1399999999876543
No 477
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0034 Score=54.45 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=33.0
Q ss_pred cCCCCCcccccccccccccccccccccccHHHHHHhh
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHL 69 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~ 69 (597)
.++.+--.|++||..++|||+.|=||.||++||.+++
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 4566667899999999999999999999999998766
No 478
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.10 E-value=0.022 Score=36.50 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecc
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFS 359 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~ 359 (597)
....|.+++|+|..++||.|+.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999984
No 479
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.05 E-value=0.021 Score=36.64 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=28.4
Q ss_pred CcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 566 SYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...|..++|+|..++||.|+.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5679999999999999999999999999874
No 480
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.03 E-value=0.14 Score=53.02 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=65.9
Q ss_pred cCCCeEEEeeC-CCcEEEEEcCCCcceeeee-CCCCceeEEEEe--ecCCEEEEEeCCCcEEEEEccC-----C----cc
Q 042883 481 LSNNELASAST-DSSLRLWDVKENLPLHTFR-GHTNEKNFVGLT--VNNEYIACGSETNEVFVYHKAI-----S----KP 547 (597)
Q Consensus 481 ~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s--~~g~~l~~~~~d~~i~iwd~~~-----~----~~ 547 (597)
+.-+.++.... ...+.|||.+.+....... ...+.|.++.|. |+|+.+++.|..+.|.+|.-.- . .+
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 33455555444 4469999999876443332 346778888885 5788999999999999986421 1 11
Q ss_pred ccccccCCCCCCCcCcCC-CcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 548 AASHRFGSDADHVDDDMG-SYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+..+... .| ..+|.+..|.++|.+++++| +.+.|+|
T Consensus 118 i~~i~i~---------~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 118 IRKIDIS---------SHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred eEEEEee---------cCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 2222111 12 36799999999997666544 3566665
No 481
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.02 E-value=0.21 Score=50.11 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCCceEEEEecCC-----CeEEEeeCCCcEEEEEcCC-----CcceeeeeCCC---Cc--eeEEEEeecCCEEEEEeCCC
Q 042883 471 HKKAVSYVKFLSN-----NELASASTDSSLRLWDVKE-----NLPLHTFRGHT---NE--KNFVGLTVNNEYIACGSETN 535 (597)
Q Consensus 471 ~~~~v~~v~~~~~-----~~l~s~~~d~~v~iwd~~~-----~~~~~~~~~~~---~~--v~~v~~s~~g~~l~~~~~d~ 535 (597)
.-..|..+.|.|- ..|++......|.||-+.. ++.+.....+- -+ ..++.|+|...+|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3346899999886 2467777788999998752 33333322111 11 24578999999888766655
Q ss_pred cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe-cCcccEEEEE
Q 042883 536 EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA-NRKGAIKVLV 594 (597)
Q Consensus 536 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~-~~dg~v~iwd 594 (597)
.-.+++++........... ..+-|.+.+|.+||+.|+.+ |..=.-+|||
T Consensus 135 vSV~~sV~~d~srVkaDi~----------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK----------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred eeEeeeeeeCCceEEEecc----------CCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 5456666543332222222 17789999999999887664 4444457887
No 482
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=95.97 E-value=0.0026 Score=64.91 Aligned_cols=58 Identities=19% Similarity=0.495 Sum_probs=46.8
Q ss_pred CcCCCCCcccccccccccccccccccccccHHHHHHhhcCCC---CCCCCCCCCccccccc
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS---DCPCCGCHLTCKHIFP 89 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~---~CP~Cr~~~~~~~l~~ 89 (597)
...|...++|+||+..+.+|+.+.|-|.||+.|+-..+.... .||+|+.......++-
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 346777899999999999999999999999999987665433 4999997766554443
No 483
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.95 E-value=0.0022 Score=59.51 Aligned_cols=44 Identities=25% Similarity=0.622 Sum_probs=36.7
Q ss_pred CCcccccccccccc-c---ccccccccccHHHHHHhhcCCCC--CCCCCC
Q 042883 37 RDTLCPICKQLMTD-A---FMTACGHSFCYTCIFTHLRNKSD--CPCCGC 80 (597)
Q Consensus 37 ~~l~C~IC~~~f~~-P---~~l~CgH~FC~~Cl~~~~~~~~~--CP~Cr~ 80 (597)
-+|.|-.|.+.+-. | -.|||.|.|-.+|+..+++...+ ||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 35889999998863 2 47899999999999999986644 999993
No 484
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.85 E-value=2.8 Score=45.58 Aligned_cols=242 Identities=11% Similarity=0.095 Sum_probs=122.2
Q ss_pred ccccceeeeeeccccccCCCCcE-EEEEEcC--CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEe-cCCCceeEEE
Q 042883 310 QYSRLRVIAELRHGDLFHAANII-SSIEFDR--DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEM-PTRSKLSCLS 385 (597)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~--~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~ 385 (597)
+..+++..+..+.+......+.- ......| -+..++.++.++.|.-.|..++.............. ........++
T Consensus 160 NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGva 239 (764)
T TIGR03074 160 NVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVS 239 (764)
T ss_pred cccCceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceE
Confidence 33456666666665432211000 1122333 245666677778787777777632221111000000 0000112233
Q ss_pred Eec---------------CCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeE-------------EEEeCCC-CCce
Q 042883 386 WNK---------------YTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAW-------------SVDFSCT-EPSM 436 (597)
Q Consensus 386 ~~~---------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~ 436 (597)
+.. ..+..++.++.|+.+.-.|..+|+....+.. .+.|. .+.-.|. .+..
T Consensus 240 y~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~ 318 (764)
T TIGR03074 240 YYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTT 318 (764)
T ss_pred EecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCE
Confidence 221 0234788888899999999999998877632 22110 1111110 1234
Q ss_pred EEeecC--CC-cccCCCCeEEEEEccCCCcceeeec-c----------------CCCce-EEEEecCC-CeEEEee----
Q 042883 437 LVSGSD--DC-KVGSADHHIHYYDLRNISQPLHVFN-G----------------HKKAV-SYVKFLSN-NELASAS---- 490 (597)
Q Consensus 437 l~s~~~--d~-~~~~~d~~i~i~d~~~~~~~~~~~~-~----------------~~~~v-~~v~~~~~-~~l~s~~---- 490 (597)
++.|+. |+ .....+|.|+-||.++ ++.+=.+. + ....+ ..+++++. +.++.+.
T Consensus 319 VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~ 397 (764)
T TIGR03074 319 VVIGGRVADNYSTDEPSGVIRAFDVNT-GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT 397 (764)
T ss_pred EEEEecccccccccCCCcEEEEEECCC-CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc
Confidence 444432 21 1112367899999987 44433221 0 00111 23445555 5544422
Q ss_pred --------------CCCcEEEEEcCCCcceeeeeCCCCcee---------EEEEee-cCC---EEEEEeCCCcEEEEEcc
Q 042883 491 --------------TDSSLRLWDVKENLPLHTFRGHTNEKN---------FVGLTV-NNE---YIACGSETNEVFVYHKA 543 (597)
Q Consensus 491 --------------~d~~v~iwd~~~~~~~~~~~~~~~~v~---------~v~~s~-~g~---~l~~~~~d~~i~iwd~~ 543 (597)
..+.|.-.|..+|+..-.++.....+. -+.+.. +|+ .++.++.+|.++++|..
T Consensus 398 pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 398 PDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred ccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 224566678888887766653111111 122333 563 78889999999999999
Q ss_pred CCcccccccc
Q 042883 544 ISKPAASHRF 553 (597)
Q Consensus 544 ~~~~~~~~~~ 553 (597)
+|+++.....
T Consensus 478 tG~~l~~~~e 487 (764)
T TIGR03074 478 TGEPIVPVEE 487 (764)
T ss_pred CCCEEeecee
Confidence 9998765443
No 485
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.69 E-value=2 Score=40.78 Aligned_cols=233 Identities=8% Similarity=0.095 Sum_probs=103.2
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-...+.+|.|..+..-+++|. .+. |+....+............ ........+|.|.. ...+++|. .| +.+..
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~-~~~~~~l~~I~f~~--~~g~ivG~-~g-~ll~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLD-NPFDYHLNSISFDG--NEGWIVGE-PG-LLLHT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S------EEEEEEEET--TEEEEEEE-TT-EEEEE
T ss_pred CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCC-ccceeeEEEEEecC--CceEEEcC-Cc-eEEEe
Confidence 345899999996555566654 554 3554444222221111000 01123467788764 44555554 44 33444
Q ss_pred CCCCeeeeEEe---eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCC
Q 042883 408 VTTSQSVMEYE---EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSN 483 (597)
Q Consensus 408 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~ 483 (597)
.+.|+.-..+. ...+....+.... ++..++.+. .| .||-....++.-.. .....+.+..+..+++
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~~~-~G---------~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~d 155 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALG-DGSAELAGD-RG---------AIYRTTDGGKTWQAVVSETSGSINDITRSSD 155 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEEET-T-----------EEEESSTTSSEEEEE-S----EEEEEE-TT
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEEcC-CC---------cEEEeCCCCCCeeEcccCCcceeEeEEECCC
Confidence 44454322221 1122333444333 334444332 22 34444444443332 3344567888888889
Q ss_pred CeEEEeeCCCcE-EEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEc-cCCccccccccCCCCCCCc
Q 042883 484 NELASASTDSSL-RLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK-AISKPAASHRFGSDADHVD 561 (597)
Q Consensus 484 ~~l~s~~~d~~v-~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~ 561 (597)
+.+++.+..|.+ .-||.-...-...-..-...|..|.|+|++.+.+++ ..|.|++=+. .....-.....+.
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~------ 228 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI------ 228 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TT------
T ss_pred CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCc------
Confidence 666655566655 467754321112222345678999999998876655 7788887762 1111111100000
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCc
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
......+.+++|.+++...++|+..
T Consensus 229 -~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 229 -KTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -SS--S-EEEEEESSSS-EEEEESTT
T ss_pred -ccCceeeEEEEecCCCCEEEEeCCc
Confidence 0014558999999988777776654
No 486
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.69 E-value=0.16 Score=44.19 Aligned_cols=48 Identities=29% Similarity=0.780 Sum_probs=35.7
Q ss_pred CCccccccc-cccccc----cccc-ccccccHHHHHHhhc-CCCCCC--CCCCCCcc
Q 042883 37 RDTLCPICK-QLMTDA----FMTA-CGHSFCYTCIFTHLR-NKSDCP--CCGCHLTC 84 (597)
Q Consensus 37 ~~l~C~IC~-~~f~~P----~~l~-CgH~FC~~Cl~~~~~-~~~~CP--~Cr~~~~~ 84 (597)
++-.||||. |.|-+| .+-| |-|-.|..|.-+.+. ++..|| -|.+.+..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 356899996 667788 2335 999999999999886 445599 77665543
No 487
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=1 Score=46.79 Aligned_cols=181 Identities=15% Similarity=0.198 Sum_probs=90.1
Q ss_pred CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeE--E--eeccceeEE
Q 042883 351 RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVME--Y--EEHEKRAWS 426 (597)
Q Consensus 351 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~--~~~~~~v~~ 426 (597)
-.|+||++.+. ......-....+-++.|+. ...|++-..+|.++||++.. ..+.. + ......|..
T Consensus 64 ~~I~If~~sG~--------lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNISGQ--------LLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEecccc--------chHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecch-hhhcccccccccccCceeE
Confidence 45888887765 1111112233777899995 56677778899999999853 33222 1 122334555
Q ss_pred EEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc---CCCceEEEEecCCCe----EE-EeeCCCcEEEE
Q 042883 427 VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG---HKKAVSYVKFLSNNE----LA-SASTDSSLRLW 498 (597)
Q Consensus 427 ~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~----l~-s~~~d~~v~iw 498 (597)
+.+.. +|-.+.+.+.+- +.+.+... ..+..+.. ..-.-++-...+++. ++ ..-..+ ..++
T Consensus 133 c~~f~-~GVavlt~~g~v--------~~i~~~~~--~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~ 200 (829)
T KOG2280|consen 133 CRFFH-NGVAVLTVSGQV--------ILINGVEE--PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHIC 200 (829)
T ss_pred EEEec-CceEEEecCCcE--------EEEcCCCc--chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccc
Confidence 55543 555555544211 22222221 11111111 111111222122211 11 110111 0111
Q ss_pred EcCCC-cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 499 DVKEN-LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 499 d~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
-.... .....+....+.+..++.||++++|+--..+|.|.+-+....+....+..+
T Consensus 201 q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 201 QVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred ceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 11111 111222222345667899999999999999999999998887777666543
No 488
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.48 E-value=0.012 Score=53.80 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=43.6
Q ss_pred cccCcCCCCCcccccccccccccccccccccccHHHHHHhhc--CCCCCCCCCCCCc
Q 042883 29 VDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR--NKSDCPCCGCHLT 83 (597)
Q Consensus 29 ~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~--~~~~CP~Cr~~~~ 83 (597)
+...+.-+|+..|-||-+-..=-..+||+|-.|--|..+.-. ....||.||....
T Consensus 52 sSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 52 SSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 334445566788999999999999999999999999876443 4455999998764
No 489
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.39 E-value=1.5 Score=40.72 Aligned_cols=151 Identities=11% Similarity=0.023 Sum_probs=81.0
Q ss_pred eeEEEEeCCCCCceEEeec--CCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEe-eCCCcEEEEE
Q 042883 423 RAWSVDFSCTEPSMLVSGS--DDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASA-STDSSLRLWD 499 (597)
Q Consensus 423 ~v~~~~~~~~~~~~l~s~~--~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~-~~d~~v~iwd 499 (597)
.+.+.++++ ++..++... .++ ..++++... +.....+. ...+..-.|++++.+.+. ..+...+++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~------~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGG------RSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCC------CEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEE
Confidence 688899999 555444333 222 235555443 33322222 236777789998655544 4455555553
Q ss_pred -cCCCcce-eeee--CCCCceeEEEEeecCCEEEEEe---CCCcEEEEEccCCccc--cccccCCCCCCCcCcCCCcceE
Q 042883 500 -VKENLPL-HTFR--GHTNEKNFVGLTVNNEYIACGS---ETNEVFVYHKAISKPA--ASHRFGSDADHVDDDMGSYFIS 570 (597)
Q Consensus 500 -~~~~~~~-~~~~--~~~~~v~~v~~s~~g~~l~~~~---~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~h~~~i~ 570 (597)
...+... ..+. .....|..+.+||||..++... .++.|.+--+.....- ..+....... ......++
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~----~~~~~~v~ 169 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA----PPLLSDVT 169 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec----ccccCcce
Confidence 2333221 1121 1122799999999999776554 3577777654321111 0110000000 01145789
Q ss_pred EEEEccCCCeEEEecCcc
Q 042883 571 AVCWKSDSPTMLTANRKG 588 (597)
Q Consensus 571 ~v~~~~~~~~l~s~~~dg 588 (597)
+++|.+++.+++.+...+
T Consensus 170 ~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeecCCCEEEEEeCCCC
Confidence 999999998877665433
No 490
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.31 E-value=2.7 Score=39.89 Aligned_cols=190 Identities=9% Similarity=0.017 Sum_probs=87.2
Q ss_pred eeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe-eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc
Q 042883 381 LSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR 459 (597)
Q Consensus 381 i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~ 459 (597)
...+.... ++..++. +..|.|+.= .+.|+ .........+.+.++..++ ++.++++++.... ..-||.-
T Consensus 106 ~~~i~~l~-~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~-------~~s~~~G 174 (302)
T PF14870_consen 106 PFGITALG-DGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNF-------YSSWDPG 174 (302)
T ss_dssp EEEEEEEE-TTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSE-------EEEE-TT
T ss_pred eeEEEEcC-CCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccE-------EEEecCC
Confidence 33444443 3333333 445655433 23332 2333344557788888887 8888887764322 4566644
Q ss_pred CCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcC-CCc----ceeeeeCCCCceeEEEEeecCCEEEEEeCC
Q 042883 460 NISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVK-ENL----PLHTFRGHTNEKNFVGLTVNNEYIACGSET 534 (597)
Q Consensus 460 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~-~~~----~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 534 (597)
. ..-...-......|.+|.|.|++.|......|.|++=|.. ... .+..+....-.+..++|.+++...++|+.
T Consensus 175 ~-~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~- 252 (302)
T PF14870_consen 175 Q-TTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS- 252 (302)
T ss_dssp --SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-
T ss_pred C-ccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-
Confidence 2 1111122234578999999999666666688888887722 111 11111122234678999988877776654
Q ss_pred CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 535 NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 535 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
|.+ +.....|+.=....... .-...+..|.|.++.+ -++-+.+|.|.-|
T Consensus 253 G~l-~~S~DgGktW~~~~~~~--------~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 253 GTL-LVSTDGGKTWQKDRVGE--------NVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp T-E-EEESSTTSS-EE-GGGT--------TSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred ccE-EEeCCCCccceECcccc--------CCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 433 33444444332222111 0144578888875544 4444567877655
No 491
>PRK13684 Ycf48-like protein; Provisional
Probab=95.31 E-value=3.1 Score=40.55 Aligned_cols=153 Identities=9% Similarity=0.015 Sum_probs=82.1
Q ss_pred cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCCCeEEEeeCCCcEEEEE
Q 042883 421 EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSNNELASASTDSSLRLWD 499 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd 499 (597)
...+.++.+.| ++.+++++. .| .+.. ..+..+..-... ......++++.+.+++.++..+..|.+.+=.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G-------~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RG-------NFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFND 241 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-Cc-------eEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEcc
Confidence 45788999998 666666654 22 2322 111212222222 2334678899999986666666777765322
Q ss_pred cCCCcceeeeeC----CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc
Q 042883 500 VKENLPLHTFRG----HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 500 ~~~~~~~~~~~~----~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 575 (597)
...+..-..... ....+..+.+.+++..+++| .+|.|. .....++.-....... .-....+.+.|.
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~--------~~~~~~~~~~~~ 311 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE--------EVPSNFYKIVFL 311 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC--------CCCcceEEEEEe
Confidence 333332221111 12346788898888766555 566554 3334444322222100 002357788887
Q ss_pred cCCCeEEEecCcccEEEEE
Q 042883 576 SDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 576 ~~~~~l~s~~~dg~v~iwd 594 (597)
.++..++ .+..|.|.-|+
T Consensus 312 ~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 312 DPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCCceEE-ECCCceEEEec
Confidence 6665544 56678887765
No 492
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.27 E-value=2.5 Score=39.27 Aligned_cols=205 Identities=11% Similarity=0.035 Sum_probs=112.1
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCC------CC-eeeeEEee-----ccceeEEEEeCCCCCceEEeecCCC--
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVT------TS-QSVMEYEE-----HEKRAWSVDFSCTEPSMLVSGSDDC-- 444 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~-- 444 (597)
...+.|+++| .+.+-++....+...+||.. .. ..+-++.. ....++.+.|+. ...+.+++....
T Consensus 23 ~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 23 RNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGP 100 (336)
T ss_pred cccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccc
Confidence 3568899999 67777777777899999986 11 22333331 234688999986 455555543222
Q ss_pred ---cccCCCCeEEEEEccCCCc----ceeeec-cCCCce-EEEEecCC---Ce-EEEeeCCCcEEEEEcCCCcceee---
Q 042883 445 ---KVGSADHHIHYYDLRNISQ----PLHVFN-GHKKAV-SYVKFLSN---NE-LASASTDSSLRLWDVKENLPLHT--- 508 (597)
Q Consensus 445 ---~~~~~d~~i~i~d~~~~~~----~~~~~~-~~~~~v-~~v~~~~~---~~-l~s~~~d~~v~iwd~~~~~~~~~--- 508 (597)
..+++||+|.-|...-... ....+. ...+.| ..+++... ++ +++--..++|.+||-.-. ++..
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~-~~~~~g~ 179 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR-PPPLPGS 179 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc-cccCCCC
Confidence 1166788899998643111 112222 112222 34554422 33 444456788999985422 2211
Q ss_pred eeCC-----CCc--ee------EEEE---eecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEE
Q 042883 509 FRGH-----TNE--KN------FVGL---TVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAV 572 (597)
Q Consensus 509 ~~~~-----~~~--v~------~v~~---s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v 572 (597)
+... -.+ |. .|.| .++++.=+.|..-|.|-+||+ .|..+..+..+. .-...+.|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g---------~LNaPWG~ 249 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSG---------RLNAPWGL 249 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCC---------cccCCcee
Confidence 1100 000 00 1111 122222223334478999986 455555553321 24456778
Q ss_pred EEcc------CCCeEEEecCcccEEEEEec
Q 042883 573 CWKS------DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 573 ~~~~------~~~~l~s~~~dg~v~iwd~~ 596 (597)
+..| .|.+|+.--.||+|..||..
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence 7765 56677776679999999964
No 493
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.01 Score=43.72 Aligned_cols=44 Identities=27% Similarity=0.667 Sum_probs=35.2
Q ss_pred ccccccccccccc----------------ccc-cccccccHHHHHHhhcCCCCCCCCCCCC
Q 042883 39 TLCPICKQLMTDA----------------FMT-ACGHSFCYTCIFTHLRNKSDCPCCGCHL 82 (597)
Q Consensus 39 l~C~IC~~~f~~P----------------~~l-~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~ 82 (597)
-+|.||-.-.-|+ |.- -|.|.|-..||.+|+.....||.|.+.-
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4699987766543 222 3999999999999999999999998753
No 494
>PLN02153 epithiospecifier protein
Probab=95.23 E-value=3 Score=40.92 Aligned_cols=152 Identities=11% Similarity=0.030 Sum_probs=72.6
Q ss_pred CCCEEEEeeCC-------CcEEEEeCCCCeeeeEEe-e--ccc---eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 390 TKNLIASSDYD-------GIVTIWDVTTSQSVMEYE-E--HEK---RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 390 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~-~--~~~---~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
++.+++.|+.+ ..+.+||+.+......-. + ... ....+.+ ++.+++.||.+... .-..+.+|
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~--~~~~v~~y 106 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKR--EFSDFYSY 106 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCC--ccCcEEEE
Confidence 35666666653 357888887765432111 0 010 1122222 56777888765431 22458899
Q ss_pred EccCCCcc-eeeec----cCCCceEEEEecCCCeEEEeeCC-----------CcEEEEEcCCCcceee--ee---CCCCc
Q 042883 457 DLRNISQP-LHVFN----GHKKAVSYVKFLSNNELASASTD-----------SSLRLWDVKENLPLHT--FR---GHTNE 515 (597)
Q Consensus 457 d~~~~~~~-~~~~~----~~~~~v~~v~~~~~~~l~s~~~d-----------~~v~iwd~~~~~~~~~--~~---~~~~~ 515 (597)
|+.+.... +..+. .....-.+++...+..++.|+.+ ..|.+||..+.+-... .. .....
T Consensus 107 d~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~ 186 (341)
T PLN02153 107 DTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG 186 (341)
T ss_pred ECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc
Confidence 98752211 11110 00111123333334556666653 2477889876432211 10 00111
Q ss_pred eeEEEEeecCCEEEEEeCC-------------CcEEEEEccCCccc
Q 042883 516 KNFVGLTVNNEYIACGSET-------------NEVFVYHKAISKPA 548 (597)
Q Consensus 516 v~~v~~s~~g~~l~~~~~d-------------~~i~iwd~~~~~~~ 548 (597)
. +++ .-++++++.|+.+ +.|.+||..+.+-.
T Consensus 187 ~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 187 A-GFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred c-eEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 1 122 2366666665432 46888998776544
No 495
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.12 E-value=5.7 Score=43.25 Aligned_cols=195 Identities=11% Similarity=0.089 Sum_probs=100.9
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeeEEeeccce--------eEEEEeCCC---------------CCceEEeecCCCccc
Q 042883 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKR--------AWSVDFSCT---------------EPSMLVSGSDDCKVG 447 (597)
Q Consensus 391 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~---------------~~~~l~s~~~d~~~~ 447 (597)
+..++.++.++.|.-.|..+|+.+..+...... ...+++... .+..++.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T------ 267 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT------ 267 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec------
Confidence 456777777889999999999888776532210 122233210 112344444
Q ss_pred CCCCeEEEEEccCCCcceeeeccCCCce-------------EEEEecC---CCeEEEeeC----------CCcEEEEEcC
Q 042883 448 SADHHIHYYDLRNISQPLHVFNGHKKAV-------------SYVKFLS---NNELASAST----------DSSLRLWDVK 501 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v-------------~~v~~~~---~~~l~s~~~----------d~~v~iwd~~ 501 (597)
.|+.+.-.|.++ ++.+-.+.. .+.| ..+.-.| ++.+++|+. +|.|+-+|..
T Consensus 268 -~Dg~LiALDA~T-Gk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~ 344 (764)
T TIGR03074 268 -SDARLIALDADT-GKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVN 344 (764)
T ss_pred -CCCeEEEEECCC-CCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECC
Confidence 355578888877 555544421 1111 1111122 256777653 6889999999
Q ss_pred CCcceeeeeCC---------CC--------ce-eEEEEeecCCEEEEEeC------------------CCcEEEEEccCC
Q 042883 502 ENLPLHTFRGH---------TN--------EK-NFVGLTVNNEYIACGSE------------------TNEVFVYHKAIS 545 (597)
Q Consensus 502 ~~~~~~~~~~~---------~~--------~v-~~v~~s~~g~~l~~~~~------------------d~~i~iwd~~~~ 545 (597)
+|+.+-.+..- .+ .+ ..+++++...+++.+.. .+.|.-.|..+|
T Consensus 345 TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 345 TGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred CCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCC
Confidence 99877665410 00 11 12445554444333221 234556677777
Q ss_pred ccccccccCCCCCCCcCcCCCcceEEEEEcc-CCC---eEEEecCcccEEEEEec
Q 042883 546 KPAASHRFGSDADHVDDDMGSYFISAVCWKS-DSP---TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~---~l~s~~~dg~v~iwd~~ 596 (597)
+..-.+.....-....+. .....=+.+.. +|. .++.++.+|.++++|-+
T Consensus 425 k~~W~~Q~~~hD~WD~D~--~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 425 KERWVFQTVHHDLWDMDV--PAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred ceEEEecccCCccccccc--cCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 766555432100000000 11111122222 453 68889999999988854
No 496
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.10 E-value=0.5 Score=46.83 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=79.2
Q ss_pred ceeEEEEeCCCCCceEEeecCCCcc--c--CCCC-eEEEEEccC-CCcc--eeeeccCCCceEEEEecCCCeEEEeeCCC
Q 042883 422 KRAWSVDFSCTEPSMLVSGSDDCKV--G--SADH-HIHYYDLRN-ISQP--LHVFNGHKKAVSYVKFLSNNELASASTDS 493 (597)
Q Consensus 422 ~~v~~~~~~~~~~~~l~s~~~d~~~--~--~~d~-~i~i~d~~~-~~~~--~~~~~~~~~~v~~v~~~~~~~l~s~~~d~ 493 (597)
.....|+|.+ ++.++++-..+... + ...+ .|.+++-.. .++. ...+.........+++.+++ |+++....
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPD 91 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCe
Confidence 3456778887 66666654321000 0 0112 466665432 1222 23333333456889998888 55555554
Q ss_pred cEEEEEcCC-C----c--ce-eeeeC----CCCceeEEEEeecCCEEEEEeCC-------------------CcEEEEEc
Q 042883 494 SLRLWDVKE-N----L--PL-HTFRG----HTNEKNFVGLTVNNEYIACGSET-------------------NEVFVYHK 542 (597)
Q Consensus 494 ~v~iwd~~~-~----~--~~-~~~~~----~~~~v~~v~~s~~g~~l~~~~~d-------------------~~i~iwd~ 542 (597)
..++.|... + + .+ ..+.. +......+.|.|||.++++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 334445432 1 1 11 11222 13346789999999877655421 33444554
Q ss_pred cCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 543 AISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
.+++. ..+..+ ....+.++|+|+|.++++-..+
T Consensus 172 dg~~~-e~~a~G-----------~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAHG-----------FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEecC-----------cCCCccceECCCCCEEEEccCC
Confidence 43332 122211 3346789999999888775433
No 497
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.01 E-value=6.5 Score=42.58 Aligned_cols=264 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred ccccceeeeeeccc-------cccCCCCcEEEEEEcCCC----CEEEEeeC---CCcEEEEecccCccCCccCCCCceEe
Q 042883 310 QYSRLRVIAELRHG-------DLFHAANIISSIEFDRDD----ELFASAGV---SRRIKIFEFSSVVNEPRDVHYPMVEM 375 (597)
Q Consensus 310 ~~~~~~~~~~~~~~-------~~~~~~~~v~~i~~~~~~----~~l~t~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~ 375 (597)
..+++..+.+.... +-+..-+||.++..-.+. ..++|++. ||+++|....-+ .........
T Consensus 327 gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~-----I~e~A~i~l 401 (1096)
T KOG1897|consen 327 GDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIG-----IDELASIDL 401 (1096)
T ss_pred CceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccc-----cceeeEeec
Q ss_pred cCCCceeEEE--EecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeE
Q 042883 376 PTRSKLSCLS--WNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453 (597)
Q Consensus 376 ~~~~~i~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i 453 (597)
.....++.+. +.+.-.++++.+- -+.-++..+...-......+.......+..+-..++.++-...++ |
T Consensus 402 ~Gikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~--------i 472 (1096)
T KOG1897|consen 402 PGIKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNS--------I 472 (1096)
T ss_pred CCccceeEeeccccccCCcEEEEEe-ccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEeccc--------E
Q ss_pred EEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEeecCC------
Q 042883 454 HYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLTVNNE------ 526 (597)
Q Consensus 454 ~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~------ 526 (597)
++++-. ..+..+....+...+.++.....++.++.++.+...++..+....... .....|.|+.++|-|.
T Consensus 473 Rl~ss~---~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 473 RLVSSA---GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred EEEcch---hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcce
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 527 YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++++|..+..+.+.-....-.+.....-..... ...|.-..|-.|+.+|.++..||.+.-|.++
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~i------PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPDLILITHEQLSGEII------PRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred EEEEEeecceEEEEEECCCcceeeeeccCCCcc------chheeeEEeeccceEEEEEcCCceEEEEEEE
No 498
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.98 E-value=0.0092 Score=62.16 Aligned_cols=50 Identities=20% Similarity=0.636 Sum_probs=38.4
Q ss_pred CCCCCccccccccccc-----cc--ccccccccccHHHHHHhhcCCC--CCCCCCCCCc
Q 042883 34 EVDRDTLCPICKQLMT-----DA--FMTACGHSFCYTCIFTHLRNKS--DCPCCGCHLT 83 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~-----~P--~~l~CgH~FC~~Cl~~~~~~~~--~CP~Cr~~~~ 83 (597)
.+.---.|+||...+. -| .+-.|.|-|--+||-+|..+.. .||.||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4455567999999888 23 3444999999999999998654 4999997654
No 499
>PLN02193 nitrile-specifier protein
Probab=94.84 E-value=5.6 Score=40.99 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=75.7
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCeeeeEEee----ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC
Q 042883 390 TKNLIASSDYD-----GIVTIWDVTTSQSVMEYEE----HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN 460 (597)
Q Consensus 390 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~ 460 (597)
++.+++.|+.+ ..+.+||+.+.+....-.. ....-.+++.. ++.+++.|+.++.. ....+..||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~--~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATA--RLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCC--CcceEEEEECCC
Confidence 46677777755 3588899887654332110 11111122222 56777777755431 234578888875
Q ss_pred CCcceeeec------cCCCceEEEEecCCCeEEEeeCC----CcEEEEEcCCCcceeeeeC---CCCceeEEEEeecCCE
Q 042883 461 ISQPLHVFN------GHKKAVSYVKFLSNNELASASTD----SSLRLWDVKENLPLHTFRG---HTNEKNFVGLTVNNEY 527 (597)
Q Consensus 461 ~~~~~~~~~------~~~~~v~~v~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~---~~~~v~~v~~s~~g~~ 527 (597)
... ..+. ..... ..++...+..++.++.+ ..+.+||+.+.+-...-.. ........+..-++++
T Consensus 304 ~~W--~~~~~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~i 380 (470)
T PLN02193 304 KKW--FHCSTPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHI 380 (470)
T ss_pred CEE--EeCCCCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEE
Confidence 221 1111 01111 12222333556666655 4589999887543222110 0011111222335677
Q ss_pred EEEEeCC--------------CcEEEEEccCCccc
Q 042883 528 IACGSET--------------NEVFVYHKAISKPA 548 (597)
Q Consensus 528 l~~~~~d--------------~~i~iwd~~~~~~~ 548 (597)
++.|+.+ +.+.+||+.+.+-.
T Consensus 381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 7777753 24788888776544
No 500
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.82 E-value=0.38 Score=51.50 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred EEeeCCCcEEEEEcCCC----------------------cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 487 ASASTDSSLRLWDVKEN----------------------LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~----------------------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
+....|+.+.+||-... ..+.....-.-.|..|.++|+|.+|+..|..|.+.+.=.+.
T Consensus 36 Ll~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r 115 (717)
T PF10168_consen 36 LLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRR 115 (717)
T ss_pred eEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccc
Q ss_pred CccccccccCC---------CCCCCcCcCCCcceEEEEEccCC---CeEEEecCcccEEEEEec
Q 042883 545 SKPAASHRFGS---------DADHVDDDMGSYFISAVCWKSDS---PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 545 ~~~~~~~~~~~---------~~~~~~~~~h~~~i~~v~~~~~~---~~l~s~~~dg~v~iwd~~ 596 (597)
......+..+. .........+...|..+.|+|.+ ..|+.=..|+++++||+.
T Consensus 116 ~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 116 WGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred cCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC
Done!