Query 042883
Match_columns 597
No_of_seqs 584 out of 5164
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 18:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 6.9E-40 2.4E-44 330.4 31.6 252 324-596 103-410 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 4.6E-39 1.6E-43 310.8 32.7 246 325-597 9-259 (304)
3 4gqb_B Methylosome protein 50; 100.0 8.5E-39 2.9E-43 313.3 33.3 246 327-597 80-331 (344)
4 3ow8_A WD repeat-containing pr 100.0 2.7E-38 9.2E-43 307.5 31.9 244 325-596 76-320 (321)
5 3ow8_A WD repeat-containing pr 100.0 5E-38 1.7E-42 305.6 31.6 247 325-597 28-279 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 2E-37 6.7E-42 304.5 34.9 246 324-596 50-300 (340)
7 3iz6_a 40S ribosomal protein R 100.0 1.5E-38 5.3E-43 317.4 27.0 258 324-596 61-374 (380)
8 3frx_A Guanine nucleotide-bind 100.0 1.6E-37 5.5E-42 302.1 33.2 261 324-597 12-317 (319)
9 2pbi_B Guanine nucleotide-bind 100.0 4.2E-37 1.4E-41 303.6 34.2 251 324-594 59-354 (354)
10 2pm7_B Protein transport prote 100.0 1E-36 3.5E-41 293.3 34.5 252 326-596 6-284 (297)
11 4g56_B MGC81050 protein; prote 100.0 5.4E-37 1.8E-41 303.1 31.2 246 326-596 91-342 (357)
12 2xzm_R RACK1; ribosome, transl 100.0 1.6E-36 5.6E-41 298.4 33.7 268 324-597 16-340 (343)
13 1got_B GT-beta; complex (GTP-b 100.0 3.1E-36 1.1E-40 296.0 33.6 244 326-594 94-340 (340)
14 4gqb_B Methylosome protein 50; 100.0 1.2E-36 4.1E-41 298.0 30.0 252 323-597 24-289 (344)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.7E-36 2.3E-40 294.1 31.6 259 325-596 11-282 (345)
16 3bg1_A Protein SEC13 homolog; 100.0 1.3E-36 4.5E-41 295.2 25.7 250 325-596 9-292 (316)
17 4aow_A Guanine nucleotide-bind 100.0 4.4E-35 1.5E-39 288.1 34.1 265 324-597 33-337 (340)
18 2hes_X YDR267CP; beta-propelle 100.0 1.4E-35 4.9E-40 289.8 29.7 250 327-596 56-327 (330)
19 2hes_X YDR267CP; beta-propelle 100.0 4.1E-35 1.4E-39 286.6 32.0 253 325-596 10-279 (330)
20 2ynn_A Coatomer subunit beta'; 100.0 4.5E-35 1.5E-39 282.9 31.4 245 325-596 51-301 (304)
21 1erj_A Transcriptional repress 100.0 7.3E-35 2.5E-39 292.2 33.5 241 328-596 122-388 (393)
22 4ery_A WD repeat-containing pr 100.0 1.3E-34 4.3E-39 281.2 34.0 248 325-597 19-268 (312)
23 4g56_B MGC81050 protein; prote 100.0 2.1E-35 7E-40 291.7 28.6 251 322-597 35-301 (357)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.7E-35 1.6E-39 288.0 31.0 256 326-597 58-335 (345)
25 1nr0_A Actin interacting prote 100.0 3.7E-35 1.3E-39 311.6 30.4 256 325-596 55-354 (611)
26 1erj_A Transcriptional repress 100.0 2.2E-34 7.6E-39 288.6 30.6 259 326-596 61-340 (393)
27 3zwl_B Eukaryotic translation 100.0 1E-33 3.5E-38 281.5 34.1 252 323-596 26-345 (369)
28 4ery_A WD repeat-containing pr 100.0 7.1E-34 2.4E-38 275.9 31.9 244 325-596 61-311 (312)
29 3jrp_A Fusion protein of prote 100.0 1E-33 3.4E-38 282.7 31.6 253 325-596 7-286 (379)
30 4e54_B DNA damage-binding prot 100.0 2.3E-34 7.7E-39 292.8 27.0 256 326-597 116-430 (435)
31 2ymu_A WD-40 repeat protein; u 100.0 1.1E-33 3.7E-38 299.4 32.2 244 325-594 299-577 (577)
32 3dm0_A Maltose-binding peripla 100.0 1.2E-33 4E-38 305.1 32.6 267 323-596 376-692 (694)
33 3f3f_A Nucleoporin SEH1; struc 100.0 2.8E-33 9.6E-38 275.9 31.7 261 325-597 7-337 (351)
34 1nr0_A Actin interacting prote 100.0 1.6E-33 5.6E-38 298.9 31.5 250 327-596 16-269 (611)
35 2ymu_A WD-40 repeat protein; u 100.0 2.2E-33 7.6E-38 296.9 32.0 247 324-596 11-333 (577)
36 3k26_A Polycomb protein EED; W 100.0 9.9E-34 3.4E-38 281.4 27.1 249 327-597 67-366 (366)
37 2pm9_A Protein WEB1, protein t 100.0 7.9E-34 2.7E-38 287.5 23.5 269 325-597 109-414 (416)
38 3ei3_B DNA damage-binding prot 100.0 8.3E-33 2.8E-37 276.7 30.5 253 325-597 69-382 (383)
39 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-33 7.9E-38 288.5 26.8 259 326-596 204-516 (524)
40 1gxr_A ESG1, transducin-like e 100.0 2E-32 6.8E-37 268.6 32.3 245 326-596 48-295 (337)
41 4a11_B DNA excision repair pro 100.0 7.2E-32 2.5E-36 272.2 36.7 263 326-597 40-365 (408)
42 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-32 5.1E-37 273.6 30.9 245 327-597 6-274 (372)
43 1gxr_A ESG1, transducin-like e 100.0 4.9E-32 1.7E-36 265.9 34.1 241 327-596 95-336 (337)
44 2xyi_A Probable histone-bindin 100.0 1.1E-32 3.7E-37 279.9 30.3 266 324-596 123-409 (430)
45 2j04_B YDR362CP, TAU91; beta p 100.0 7.9E-34 2.7E-38 292.0 21.7 249 325-596 129-427 (524)
46 4h5i_A Guanine nucleotide-exch 100.0 6.2E-33 2.1E-37 274.7 27.2 196 380-596 135-342 (365)
47 2pm9_A Protein WEB1, protein t 100.0 4.4E-33 1.5E-37 282.0 26.7 249 326-596 64-336 (416)
48 4aez_A CDC20, WD repeat-contai 100.0 2E-32 6.8E-37 275.5 31.2 242 327-597 132-380 (401)
49 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-32 5.9E-37 266.1 29.7 244 325-596 14-295 (313)
50 1sq9_A Antiviral protein SKI8; 100.0 8.8E-33 3E-37 277.9 27.7 260 325-597 58-395 (397)
51 3dwl_C Actin-related protein 2 100.0 7.5E-34 2.6E-38 283.7 19.4 242 328-596 10-280 (377)
52 1r5m_A SIR4-interacting protei 100.0 2.4E-32 8.1E-37 277.2 30.7 254 327-596 43-360 (425)
53 1r5m_A SIR4-interacting protei 100.0 3.6E-32 1.2E-36 275.9 31.0 240 328-596 107-424 (425)
54 3dw8_B Serine/threonine-protei 100.0 1.3E-32 4.6E-37 281.3 27.4 260 326-596 25-372 (447)
55 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-32 8.1E-37 272.2 28.0 257 325-596 48-360 (372)
56 1sq9_A Antiviral protein SKI8; 100.0 2.2E-32 7.6E-37 275.0 27.9 260 325-596 12-321 (397)
57 3gre_A Serine/threonine-protei 100.0 1.4E-32 4.7E-37 280.3 26.2 259 326-597 60-359 (437)
58 3jro_A Fusion protein of prote 100.0 1.9E-32 6.4E-37 297.3 27.7 253 325-596 5-284 (753)
59 3mkq_A Coatomer beta'-subunit; 100.0 4.3E-32 1.5E-36 299.2 30.9 245 325-596 9-258 (814)
60 3vl1_A 26S proteasome regulato 100.0 7.4E-33 2.5E-37 280.7 22.5 239 330-596 57-321 (420)
61 3k26_A Polycomb protein EED; W 100.0 5.1E-32 1.7E-36 269.0 27.1 258 327-596 16-317 (366)
62 3i2n_A WD repeat-containing pr 100.0 6.8E-32 2.3E-36 267.2 27.5 250 326-596 15-290 (357)
63 1vyh_C Platelet-activating fac 100.0 1E-31 3.6E-36 270.6 29.1 211 372-596 102-368 (410)
64 3dwl_C Actin-related protein 2 100.0 2.2E-32 7.7E-37 272.9 24.1 257 324-595 50-377 (377)
65 1yfq_A Cell cycle arrest prote 100.0 1.1E-31 3.8E-36 264.1 28.6 251 327-596 9-281 (342)
66 3i2n_A WD repeat-containing pr 100.0 5.9E-32 2E-36 267.6 26.5 254 327-597 63-353 (357)
67 4gga_A P55CDC, cell division c 100.0 6.1E-31 2.1E-35 266.3 33.8 241 326-596 144-394 (420)
68 3v7d_B Cell division control p 100.0 4.5E-31 1.5E-35 271.3 30.3 246 325-597 117-421 (464)
69 2aq5_A Coronin-1A; WD40 repeat 100.0 4.8E-31 1.6E-35 265.7 28.6 253 325-597 77-342 (402)
70 3vl1_A 26S proteasome regulato 100.0 9.6E-31 3.3E-35 265.2 30.8 252 326-596 136-418 (420)
71 4ggc_A P55CDC, cell division c 100.0 8.6E-31 2.9E-35 254.8 29.2 242 332-596 28-314 (318)
72 3iz6_a 40S ribosomal protein R 100.0 2.1E-31 7.1E-36 265.8 25.0 216 374-596 62-328 (380)
73 3mmy_A MRNA export factor; mRN 100.0 4E-31 1.4E-35 262.7 26.3 243 325-594 35-343 (368)
74 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-30 4E-35 265.6 29.1 238 327-596 131-413 (435)
75 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-30 4.1E-35 300.7 32.9 245 325-596 611-912 (1249)
76 2pbi_B Guanine nucleotide-bind 100.0 1.7E-30 5.7E-35 256.3 29.0 211 374-596 60-314 (354)
77 4aez_A CDC20, WD repeat-contai 100.0 8.7E-31 3E-35 263.5 27.5 240 327-597 89-336 (401)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-30 8.3E-35 260.5 29.4 245 332-597 37-299 (402)
79 3gre_A Serine/threonine-protei 100.0 1.9E-30 6.6E-35 264.4 26.5 257 327-594 109-437 (437)
80 3frx_A Guanine nucleotide-bind 100.0 3.9E-30 1.3E-34 249.9 27.1 202 374-596 13-226 (319)
81 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-29 4.8E-34 278.5 31.2 250 325-595 13-310 (902)
82 2j04_A TAU60, YPL007P, hypothe 100.0 5E-30 1.7E-34 256.5 24.9 238 328-596 14-296 (588)
83 3vu4_A KMHSV2; beta-propeller 100.0 2.1E-29 7.3E-34 248.5 29.3 256 326-596 16-335 (355)
84 2pm7_B Protein transport prote 100.0 2.3E-29 8E-34 241.9 28.1 206 374-596 5-237 (297)
85 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.2E-29 3.2E-33 252.5 33.1 248 325-597 155-442 (445)
86 3dw8_B Serine/threonine-protei 100.0 9.2E-30 3.1E-34 260.2 25.7 253 330-594 94-443 (447)
87 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.2E-29 1.1E-33 256.1 29.7 254 330-595 5-337 (450)
88 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.7E-29 3E-33 252.7 31.8 244 325-597 114-391 (445)
89 1pgu_A Actin interacting prote 100.0 8.7E-29 3E-33 263.8 30.3 252 326-596 15-282 (615)
90 1yfq_A Cell cycle arrest prote 100.0 5.1E-29 1.7E-33 245.0 26.1 232 325-589 52-315 (342)
91 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-28 5.7E-33 250.8 30.8 240 326-596 99-390 (450)
92 2xzm_R RACK1; ribosome, transl 100.0 1.2E-28 4E-33 242.3 28.1 201 373-595 16-242 (343)
93 3mkq_A Coatomer beta'-subunit; 100.0 7.1E-29 2.4E-33 273.5 29.4 244 326-596 52-301 (814)
94 4e54_B DNA damage-binding prot 100.0 4E-29 1.4E-33 254.1 24.8 206 373-596 114-326 (435)
95 4gq1_A NUP37; propeller, trans 100.0 5.9E-30 2E-34 256.3 18.3 247 328-595 88-387 (393)
96 4h5i_A Guanine nucleotide-exch 100.0 1.4E-28 4.9E-33 243.4 27.1 205 327-545 131-344 (365)
97 3lrv_A PRE-mRNA-splicing facto 100.0 6.2E-29 2.1E-33 244.4 24.2 231 336-596 43-291 (343)
98 4aow_A Guanine nucleotide-bind 100.0 1.1E-28 3.9E-33 242.2 25.8 209 374-596 34-285 (340)
99 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-29 5.4E-34 291.4 22.3 239 326-596 1000-1248(1249)
100 2oaj_A Protein SNI1; WD40 repe 100.0 8.7E-29 3E-33 272.2 26.5 160 421-595 435-659 (902)
101 4gga_A P55CDC, cell division c 100.0 3.9E-28 1.3E-32 245.7 28.4 237 331-597 107-353 (420)
102 3bg1_A Protein SEC13 homolog; 100.0 4E-29 1.4E-33 242.5 19.8 204 374-596 9-246 (316)
103 4a11_B DNA excision repair pro 100.0 1.9E-27 6.4E-32 239.8 29.9 240 327-595 97-403 (408)
104 1pgu_A Actin interacting prote 100.0 1E-27 3.5E-32 255.5 28.9 252 325-596 59-327 (615)
105 3v7d_B Cell division control p 100.0 5E-27 1.7E-31 241.1 32.3 244 326-595 200-461 (464)
106 3dm0_A Maltose-binding peripla 100.0 2E-27 6.8E-32 256.4 27.4 203 374-596 378-591 (694)
107 2w18_A PALB2, fancn, partner a 100.0 6E-27 2E-31 219.9 26.7 242 331-596 41-356 (356)
108 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-27 7.8E-32 237.3 25.3 234 327-586 83-350 (588)
109 2xyi_A Probable histone-bindin 100.0 3.8E-27 1.3E-31 239.1 26.3 214 325-545 177-411 (430)
110 3ei3_B DNA damage-binding prot 100.0 5.1E-27 1.7E-31 234.6 26.4 199 376-596 71-281 (383)
111 3jrp_A Fusion protein of prote 100.0 6.4E-27 2.2E-31 233.3 25.9 209 373-597 6-240 (379)
112 3odt_A Protein DOA1; ubiquitin 100.0 4.1E-26 1.4E-30 221.1 27.8 217 326-553 56-305 (313)
113 3bws_A Protein LP49; two-domai 100.0 4.5E-26 1.5E-30 231.8 29.1 248 325-597 165-432 (433)
114 3zwl_B Eukaryotic translation 100.0 2.8E-26 9.7E-31 227.7 27.0 204 371-596 25-248 (369)
115 1l0q_A Surface layer protein; 99.9 1E-25 3.5E-30 225.8 30.8 236 328-596 30-274 (391)
116 3lrv_A PRE-mRNA-splicing facto 99.9 1E-26 3.6E-31 228.4 22.7 236 330-593 77-329 (343)
117 2w18_A PALB2, fancn, partner a 99.9 1.9E-26 6.7E-31 216.4 22.8 206 328-542 110-355 (356)
118 3f3f_A Nucleoporin SEH1; struc 99.9 7.2E-26 2.4E-30 222.7 27.5 207 373-596 6-248 (351)
119 4ggc_A P55CDC, cell division c 99.9 4E-25 1.4E-29 214.7 29.1 208 326-546 64-317 (318)
120 3jro_A Fusion protein of prote 99.9 1.4E-25 4.6E-30 243.5 24.1 208 374-597 5-238 (753)
121 3vu4_A KMHSV2; beta-propeller 99.9 4.7E-25 1.6E-29 217.4 25.0 200 375-596 16-270 (355)
122 3mmy_A MRNA export factor; mRN 99.9 4.7E-25 1.6E-29 218.8 25.0 214 374-597 35-304 (368)
123 3bws_A Protein LP49; two-domai 99.9 2.7E-25 9.2E-30 226.0 23.6 243 329-596 122-389 (433)
124 4gq1_A NUP37; propeller, trans 99.9 2E-25 7E-30 223.3 19.4 203 324-542 131-387 (393)
125 1l0q_A Surface layer protein; 99.9 3.1E-24 1.1E-28 215.0 27.7 222 342-596 3-232 (391)
126 1p22_A F-BOX/WD-repeat protein 99.9 5.3E-25 1.8E-29 223.8 21.7 208 325-551 169-421 (435)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-21 3.8E-26 197.3 29.7 224 341-596 143-386 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.8E-21 1.6E-25 192.6 28.5 224 325-580 174-411 (415)
129 3vgz_A Uncharacterized protein 99.9 6.7E-21 2.3E-25 187.8 27.9 239 329-596 40-302 (353)
130 1nir_A Nitrite reductase; hemo 99.9 5.2E-21 1.8E-25 198.3 28.0 237 332-597 181-458 (543)
131 2ojh_A Uncharacterized protein 99.9 1.5E-21 5.2E-26 187.0 21.2 236 325-588 37-293 (297)
132 1ri6_A Putative isomerase YBHE 99.9 5.5E-21 1.9E-25 187.5 25.0 242 327-596 35-307 (343)
133 2oit_A Nucleoporin 214KDA; NH2 99.9 4.8E-21 1.6E-25 193.2 23.3 207 329-546 36-280 (434)
134 2ecf_A Dipeptidyl peptidase IV 99.9 4.7E-21 1.6E-25 208.6 22.8 241 329-596 36-366 (741)
135 3u4y_A Uncharacterized protein 99.9 1.4E-19 4.6E-24 176.7 29.8 247 329-596 40-303 (331)
136 1jmx_B Amine dehydrogenase; ox 99.9 2.3E-20 7.8E-25 183.6 22.1 237 334-597 4-325 (349)
137 2oit_A Nucleoporin 214KDA; NH2 99.9 6.1E-21 2.1E-25 192.5 17.4 203 379-596 37-277 (434)
138 1nir_A Nitrite reductase; hemo 99.9 9E-20 3.1E-24 189.0 26.5 235 337-597 145-402 (543)
139 1pby_B Quinohemoprotein amine 99.9 6.7E-20 2.3E-24 179.2 23.8 229 342-597 2-310 (337)
140 2ojh_A Uncharacterized protein 99.9 6.5E-20 2.2E-24 175.5 23.2 223 346-596 17-257 (297)
141 3hfq_A Uncharacterized protein 99.8 2.7E-19 9.4E-24 175.8 26.1 243 328-596 38-316 (347)
142 3u4y_A Uncharacterized protein 99.8 7.6E-19 2.6E-23 171.4 27.7 233 336-596 4-251 (331)
143 3vgz_A Uncharacterized protein 99.8 1.7E-18 5.8E-23 170.4 28.8 227 329-587 88-334 (353)
144 1ri6_A Putative isomerase YBHE 99.8 7E-19 2.4E-23 172.4 25.4 236 343-596 7-261 (343)
145 1xfd_A DIP, dipeptidyl aminope 99.8 3.3E-20 1.1E-24 201.4 17.5 234 331-594 18-341 (723)
146 3o4h_A Acylamino-acid-releasin 99.8 5.6E-20 1.9E-24 194.1 18.4 230 329-595 21-274 (582)
147 2ecf_A Dipeptidyl peptidase IV 99.8 4E-19 1.4E-23 193.4 22.0 244 331-596 110-412 (741)
148 3scy_A Hypothetical bacterial 99.8 3.6E-18 1.2E-22 168.7 27.0 245 328-596 48-336 (361)
149 2z3z_A Dipeptidyl aminopeptida 99.8 7.3E-19 2.5E-23 190.2 22.3 253 326-596 117-434 (706)
150 1xfd_A DIP, dipeptidyl aminope 99.8 1.3E-18 4.3E-23 188.9 22.1 246 331-596 62-392 (723)
151 2z3z_A Dipeptidyl aminopeptida 99.8 1.5E-18 5.2E-23 187.7 22.2 241 330-595 82-387 (706)
152 1k32_A Tricorn protease; prote 99.8 2.2E-18 7.6E-23 194.1 23.6 236 326-596 200-460 (1045)
153 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.8E-18 2E-22 167.4 23.6 243 330-597 40-341 (365)
154 3fvz_A Peptidyl-glycine alpha- 99.8 3E-17 1E-21 159.6 27.6 244 328-596 22-321 (329)
155 2kr4_A Ubiquitin conjugation f 99.8 6.4E-20 2.2E-24 136.1 6.6 72 32-103 8-79 (85)
156 1k32_A Tricorn protease; prote 99.8 4.4E-18 1.5E-22 191.7 23.2 236 331-595 246-500 (1045)
157 2kre_A Ubiquitin conjugation f 99.8 1.8E-19 6.2E-24 137.6 8.0 73 31-103 22-94 (100)
158 1wgm_A Ubiquitin conjugation f 99.8 1.7E-19 5.7E-24 137.3 7.5 73 32-104 16-89 (98)
159 1q7f_A NHL, brain tumor CG1071 99.8 2.2E-16 7.5E-21 150.4 29.5 247 325-596 25-279 (286)
160 1t1h_A Gspef-atpub14, armadill 99.8 1.7E-19 5.7E-24 133.1 4.9 70 33-102 3-73 (78)
161 1z68_A Fibroblast activation p 99.8 3.7E-18 1.3E-22 185.1 16.8 227 334-593 20-340 (719)
162 3o4h_A Acylamino-acid-releasin 99.8 1.4E-17 4.7E-22 175.8 20.4 234 326-595 60-313 (582)
163 3ztg_A E3 ubiquitin-protein li 99.8 7.5E-19 2.6E-23 134.3 6.4 74 31-104 6-83 (92)
164 4a5s_A Dipeptidyl peptidase 4 99.7 8.4E-17 2.9E-21 174.4 22.9 238 331-596 18-352 (740)
165 3hfq_A Uncharacterized protein 99.7 3E-16 1E-20 154.1 23.9 232 350-596 15-270 (347)
166 1z68_A Fibroblast activation p 99.7 7.4E-17 2.5E-21 174.8 19.0 241 331-596 61-390 (719)
167 1pby_B Quinohemoprotein amine 99.7 4.7E-16 1.6E-20 151.7 23.0 200 331-554 35-320 (337)
168 1jm7_B BARD1, BRCA1-associated 99.7 4.9E-19 1.7E-23 141.5 1.1 98 30-132 14-112 (117)
169 2egp_A Tripartite motif-contai 99.7 3.2E-19 1.1E-23 132.2 -0.3 66 31-96 5-77 (79)
170 3scy_A Hypothetical bacterial 99.7 3.4E-15 1.2E-19 147.4 27.9 236 340-596 12-290 (361)
171 2y43_A E3 ubiquitin-protein li 99.7 2.2E-18 7.6E-23 133.4 3.8 75 31-105 15-90 (99)
172 2yu4_A E3 SUMO-protein ligase 99.7 3.7E-18 1.3E-22 129.7 4.5 70 34-103 3-82 (94)
173 3lrq_A E3 ubiquitin-protein li 99.7 6.3E-19 2.1E-23 136.1 -0.0 75 30-104 14-90 (100)
174 3pe7_A Oligogalacturonate lyas 99.7 3.3E-16 1.1E-20 156.3 19.7 243 335-596 41-328 (388)
175 1rwi_B Serine/threonine-protei 99.7 4.4E-15 1.5E-19 139.9 25.1 236 331-596 25-263 (270)
176 3fl2_A E3 ubiquitin-protein li 99.7 6E-18 2.1E-22 137.0 3.8 70 32-101 46-117 (124)
177 2ecw_A Tripartite motif-contai 99.7 2.4E-18 8.3E-23 129.9 0.9 68 29-96 10-83 (85)
178 1jof_A Carboxy-CIS,CIS-muconat 99.7 1E-14 3.6E-19 144.0 26.6 243 343-596 4-290 (365)
179 2xdw_A Prolyl endopeptidase; a 99.7 5.6E-15 1.9E-19 159.4 26.7 245 328-596 123-413 (710)
180 2ecv_A Tripartite motif-contai 99.7 5.2E-18 1.8E-22 128.0 0.9 68 29-96 10-83 (85)
181 2f42_A STIP1 homology and U-bo 99.7 3.1E-17 1.1E-21 137.8 5.7 72 31-102 99-171 (179)
182 3azo_A Aminopeptidase; POP fam 99.7 3E-15 1E-19 160.5 22.5 259 325-596 19-322 (662)
183 3e5z_A Putative gluconolactona 99.7 2.6E-14 9E-19 136.7 26.3 232 328-588 26-278 (296)
184 2djb_A Polycomb group ring fin 99.7 3.9E-17 1.3E-21 117.9 4.9 61 30-90 7-68 (72)
185 2yur_A Retinoblastoma-binding 99.7 2.7E-17 9.2E-22 119.2 3.9 61 30-90 7-71 (74)
186 2dg1_A DRP35, lactonase; beta 99.7 1.1E-13 3.9E-18 134.7 30.4 243 326-587 41-300 (333)
187 1jmx_B Amine dehydrogenase; ox 99.7 4.6E-15 1.6E-19 145.5 20.7 198 331-553 44-334 (349)
188 3c5m_A Oligogalacturonate lyas 99.7 1.9E-15 6.5E-20 151.1 17.3 238 330-596 36-328 (396)
189 1z6u_A NP95-like ring finger p 99.7 3.5E-17 1.2E-21 135.9 3.8 68 34-101 74-143 (150)
190 2ckl_A Polycomb group ring fin 99.7 4.6E-17 1.6E-21 128.2 4.3 70 32-101 9-83 (108)
191 3pe7_A Oligogalacturonate lyas 99.7 4.7E-15 1.6E-19 147.9 19.9 256 328-596 79-381 (388)
192 2oiz_A Aromatic amine dehydrog 99.6 2.1E-14 7E-19 141.1 23.8 231 334-597 54-334 (361)
193 2ysl_A Tripartite motif-contai 99.6 1.5E-16 5.2E-21 115.6 6.0 57 31-87 13-72 (73)
194 2csy_A Zinc finger protein 183 99.6 1.2E-16 4.2E-21 118.4 5.5 62 32-94 9-70 (81)
195 2ecy_A TNF receptor-associated 99.6 1.7E-16 5.7E-21 112.4 5.8 57 31-87 8-65 (66)
196 2bkl_A Prolyl endopeptidase; m 99.6 9.3E-15 3.2E-19 157.2 22.1 244 327-596 118-396 (695)
197 2gop_A Trilobed protease; beta 99.6 2.6E-14 8.9E-19 140.1 23.0 226 330-595 59-329 (347)
198 4ayc_A E3 ubiquitin-protein li 99.6 6.7E-17 2.3E-21 133.2 3.0 63 34-98 49-111 (138)
199 3azo_A Aminopeptidase; POP fam 99.6 2.5E-14 8.4E-19 153.4 22.4 238 334-595 81-365 (662)
200 3htk_C E3 SUMO-protein ligase 99.6 4.9E-16 1.7E-20 136.4 7.2 74 31-104 174-252 (267)
201 3l11_A E3 ubiquitin-protein li 99.6 1.3E-16 4.5E-21 127.3 3.1 70 32-101 9-86 (115)
202 3hct_A TNF receptor-associated 99.6 2E-16 6.7E-21 126.6 3.9 72 29-100 9-81 (118)
203 2ysj_A Tripartite motif-contai 99.6 5E-16 1.7E-20 108.8 5.2 49 30-78 12-63 (63)
204 1e4u_A Transcriptional repress 99.6 7.9E-16 2.7E-20 111.1 6.1 59 29-87 2-65 (78)
205 1jm7_A BRCA1, breast cancer ty 99.6 1.6E-16 5.4E-21 126.7 1.8 69 33-101 16-87 (112)
206 3fvz_A Peptidyl-glycine alpha- 99.6 2.3E-13 8E-18 132.1 24.6 207 328-544 89-322 (329)
207 3c5m_A Oligogalacturonate lyas 99.6 3.4E-14 1.2E-18 141.9 19.3 247 334-596 85-381 (396)
208 2gop_A Trilobed protease; beta 99.6 1.7E-13 5.8E-18 134.3 23.6 226 330-596 15-290 (347)
209 2d8t_A Dactylidin, ring finger 99.6 4.2E-16 1.4E-20 112.1 3.5 55 34-88 11-65 (71)
210 3dsm_A Uncharacterized protein 99.6 6.1E-13 2.1E-17 128.9 27.1 236 330-596 44-301 (328)
211 2z2n_A Virginiamycin B lyase; 99.6 1.7E-12 5.9E-17 124.0 29.9 237 327-595 12-253 (299)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 6.5E-13 2.2E-17 128.1 26.7 248 329-596 17-298 (314)
213 2c2l_A CHIP, carboxy terminus 99.6 9E-16 3.1E-20 145.2 5.5 69 33-101 203-272 (281)
214 3ng2_A RNF4, snurf, ring finge 99.6 5.7E-16 1.9E-20 111.9 3.0 57 34-90 6-69 (71)
215 1yr2_A Prolyl oligopeptidase; 99.6 2.2E-13 7.6E-18 147.5 24.7 244 328-596 161-440 (741)
216 2dg1_A DRP35, lactonase; beta 99.6 1.1E-13 3.9E-18 134.7 20.3 244 331-595 7-261 (333)
217 3no2_A Uncharacterized protein 99.6 3.7E-13 1.3E-17 126.5 22.8 217 340-584 4-230 (276)
218 2ct2_A Tripartite motif protei 99.6 1.4E-15 4.8E-20 115.2 5.0 62 30-91 7-78 (88)
219 2ckl_B Ubiquitin ligase protei 99.6 7.2E-16 2.4E-20 131.8 3.4 70 32-101 48-120 (165)
220 4a5s_A Dipeptidyl peptidase 4 99.6 1.2E-13 4E-18 149.7 21.6 241 332-596 64-397 (740)
221 1g25_A CDK-activating kinase a 99.6 1E-15 3.4E-20 108.0 3.3 54 37-90 2-61 (65)
222 1q7f_A NHL, brain tumor CG1071 99.6 8.6E-13 2.9E-17 125.4 24.5 198 327-547 74-283 (286)
223 1bor_A Transcription factor PM 99.6 7.9E-16 2.7E-20 104.1 2.3 48 36-86 4-51 (56)
224 2ecj_A Tripartite motif-contai 99.6 3.1E-15 1.1E-19 103.1 5.2 48 31-78 8-58 (58)
225 2ea6_A Ring finger protein 4; 99.5 2.4E-15 8.1E-20 108.0 3.9 54 31-84 8-68 (69)
226 3knv_A TNF receptor-associated 99.5 5.9E-16 2E-20 126.9 0.7 68 31-98 24-101 (141)
227 3hrp_A Uncharacterized protein 99.5 1.7E-12 5.8E-17 129.4 25.6 246 329-596 130-409 (409)
228 1rmd_A RAG1; V(D)J recombinati 99.5 1.6E-15 5.5E-20 121.2 2.7 72 27-98 12-85 (116)
229 2ect_A Ring finger protein 126 99.5 4.1E-15 1.4E-19 109.4 4.1 60 31-90 8-70 (78)
230 2xeu_A Ring finger protein 4; 99.5 2.5E-15 8.6E-20 106.1 1.8 54 37-90 2-62 (64)
231 3dsm_A Uncharacterized protein 99.5 1.7E-12 5.8E-17 125.8 22.0 221 349-596 15-252 (328)
232 1qks_A Cytochrome CD1 nitrite 99.5 1.4E-11 4.8E-16 127.2 29.8 242 329-597 196-477 (567)
233 2z2n_A Virginiamycin B lyase; 99.5 3.2E-11 1.1E-15 115.1 29.8 235 328-596 55-294 (299)
234 2oiz_A Aromatic amine dehydrog 99.5 1.6E-12 5.6E-17 127.5 20.3 219 329-579 107-360 (361)
235 1iym_A EL5; ring-H2 finger, ub 99.5 1.5E-14 5E-19 98.3 3.8 50 34-83 1-54 (55)
236 1x4j_A Ring finger protein 38; 99.5 1.6E-14 5.6E-19 105.1 4.3 55 30-84 15-72 (75)
237 1qks_A Cytochrome CD1 nitrite 99.5 1.6E-11 5.6E-16 126.7 28.3 231 339-597 165-421 (567)
238 2qc5_A Streptogramin B lactona 99.5 4.4E-11 1.5E-15 114.2 29.2 237 328-595 18-258 (300)
239 3hcs_A TNF receptor-associated 99.5 1.1E-14 3.9E-19 125.1 3.5 73 29-101 9-82 (170)
240 3g4e_A Regucalcin; six bladed 99.5 2.3E-11 7.8E-16 116.1 26.8 228 330-584 13-259 (297)
241 1xip_A Nucleoporin NUP159; bet 99.5 6E-12 2.1E-16 122.2 22.8 178 331-531 39-231 (388)
242 3e5z_A Putative gluconolactona 99.5 6E-12 2.1E-16 120.1 22.0 196 376-596 25-245 (296)
243 3no2_A Uncharacterized protein 99.5 2.6E-12 8.9E-17 120.7 18.6 180 391-596 5-194 (276)
244 2mad_H Methylamine dehydrogena 99.5 3.8E-11 1.3E-15 117.9 27.7 236 334-597 70-350 (373)
245 3iuj_A Prolyl endopeptidase; h 99.4 1.1E-11 3.8E-16 132.9 24.3 240 328-596 127-404 (693)
246 1rwi_B Serine/threonine-protei 99.4 8.1E-12 2.8E-16 117.4 20.5 201 329-547 66-267 (270)
247 2ecn_A Ring finger protein 141 99.4 1.7E-14 5.9E-19 103.5 1.5 54 32-86 9-62 (70)
248 2kiz_A E3 ubiquitin-protein li 99.4 7.9E-14 2.7E-18 99.7 4.4 53 32-84 8-63 (69)
249 2l0b_A E3 ubiquitin-protein li 99.4 4.7E-14 1.6E-18 106.5 3.2 52 33-84 35-89 (91)
250 2xdw_A Prolyl endopeptidase; a 99.4 3.4E-11 1.2E-15 129.8 26.6 203 379-594 125-363 (710)
251 1xip_A Nucleoporin NUP159; bet 99.4 1.9E-12 6.4E-17 125.8 15.0 180 380-583 39-230 (388)
252 2qc5_A Streptogramin B lactona 99.4 1.8E-10 6.1E-15 109.9 28.6 235 329-596 61-299 (300)
253 1chc_A Equine herpes virus-1 r 99.4 5.1E-14 1.7E-18 100.4 2.7 48 36-83 3-51 (68)
254 2ep4_A Ring finger protein 24; 99.4 1E-13 3.5E-18 100.7 4.1 53 32-84 9-64 (74)
255 3sjl_D Methylamine dehydrogena 99.4 2.1E-11 7.3E-16 117.8 21.2 232 334-597 82-363 (386)
256 2ecm_A Ring finger and CHY zin 99.4 7.1E-14 2.4E-18 94.9 2.7 47 37-83 4-54 (55)
257 2ghs_A AGR_C_1268P; regucalcin 99.4 1.8E-10 6E-15 111.4 27.3 224 331-584 50-289 (326)
258 2bay_A PRE-mRNA splicing facto 99.4 8.6E-14 2.9E-18 94.8 1.9 54 38-91 3-57 (61)
259 3dr2_A Exported gluconolactona 99.4 1.3E-10 4.4E-15 111.3 24.8 233 328-591 43-301 (305)
260 4ic3_A E3 ubiquitin-protein li 99.4 5.8E-14 2E-18 101.2 0.5 49 32-84 18-67 (74)
261 2bkl_A Prolyl endopeptidase; m 99.4 4E-11 1.4E-15 128.9 22.8 203 377-596 119-348 (695)
262 2ecg_A Baculoviral IAP repeat- 99.4 7.2E-14 2.5E-18 101.2 0.9 49 32-84 19-68 (75)
263 4ap4_A E3 ubiquitin ligase RNF 99.4 1.9E-13 6.3E-18 113.0 3.0 54 36-89 5-65 (133)
264 2qe8_A Uncharacterized protein 99.4 3.5E-11 1.2E-15 117.3 19.6 242 330-589 17-313 (343)
265 3c75_H MADH, methylamine dehyd 99.3 8.5E-11 2.9E-15 115.8 20.0 231 334-597 122-402 (426)
266 1yr2_A Prolyl oligopeptidase; 99.3 2.4E-10 8.3E-15 123.7 23.6 202 379-596 163-392 (741)
267 1v87_A Deltex protein 2; ring- 99.3 1.4E-12 4.8E-17 103.8 4.1 49 37-85 24-95 (114)
268 1wim_A KIAA0161 protein; ring 99.3 1.3E-12 4.3E-17 99.5 2.9 66 37-103 4-84 (94)
269 2ecl_A Ring-box protein 2; RNF 99.3 1.6E-12 5.6E-17 95.4 3.2 50 37-86 14-78 (81)
270 2vje_A E3 ubiquitin-protein li 99.2 2.3E-12 7.8E-17 89.5 3.0 47 37-83 7-56 (64)
271 3hrp_A Uncharacterized protein 99.2 1E-09 3.4E-14 109.3 22.6 204 379-595 131-352 (409)
272 2yho_A E3 ubiquitin-protein li 99.2 6.5E-13 2.2E-17 96.5 -0.5 49 33-85 13-62 (79)
273 2vje_B MDM4 protein; proto-onc 99.2 2.9E-12 1E-16 88.6 2.6 47 37-83 6-55 (63)
274 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.9E-09 6.4E-14 103.6 23.4 202 328-544 69-299 (314)
275 2y1n_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 118.5 4.7 53 34-86 328-381 (389)
276 2ea5_A Cell growth regulator w 99.2 1.4E-11 4.8E-16 86.4 4.2 46 35-84 12-58 (68)
277 4ap4_A E3 ubiquitin ligase RNF 99.2 4.3E-12 1.5E-16 104.7 1.8 55 36-90 70-131 (133)
278 1mda_H Methylamine dehydrogena 99.1 9.6E-10 3.3E-14 106.6 16.8 224 334-597 69-346 (368)
279 3dpl_R Ring-box protein 1; ubi 99.1 2E-11 6.9E-16 93.7 3.6 48 37-84 36-101 (106)
280 2mad_H Methylamine dehydrogena 99.1 4.7E-08 1.6E-12 95.8 28.0 237 337-597 28-307 (373)
281 3g4e_A Regucalcin; six bladed 99.1 1E-08 3.4E-13 97.6 22.6 189 328-533 52-261 (297)
282 2hz6_A Endoplasmic reticulum t 99.1 1.9E-11 6.5E-16 120.2 3.4 179 390-596 8-191 (369)
283 2hz6_A Endoplasmic reticulum t 99.1 5.4E-11 1.8E-15 117.0 5.4 188 340-553 8-201 (369)
284 1npe_A Nidogen, entactin; glyc 99.1 8.8E-08 3E-12 89.5 26.4 222 331-579 37-263 (267)
285 2ece_A 462AA long hypothetical 99.1 1.8E-08 6.3E-13 97.9 21.4 243 339-585 93-399 (462)
286 1npe_A Nidogen, entactin; glyc 99.1 1.5E-07 5.3E-12 87.8 27.2 230 342-596 2-237 (267)
287 3t6p_A Baculoviral IAP repeat- 99.0 2.2E-11 7.4E-16 115.1 -0.2 49 32-84 289-338 (345)
288 3sjl_D Methylamine dehydrogena 99.0 1.3E-08 4.5E-13 98.4 18.9 204 331-554 138-373 (386)
289 2iwa_A Glutamine cyclotransfer 99.0 7.5E-08 2.5E-12 88.0 22.4 203 380-596 22-236 (266)
290 3dr2_A Exported gluconolactona 99.0 3.1E-08 1.1E-12 94.6 20.2 195 376-595 42-265 (305)
291 2ghs_A AGR_C_1268P; regucalcin 99.0 2.4E-07 8.2E-12 89.3 25.1 186 329-533 89-291 (326)
292 3nol_A Glutamine cyclotransfer 99.0 6.7E-08 2.3E-12 87.1 19.4 192 380-587 44-245 (262)
293 3c75_H MADH, methylamine dehyd 99.0 5.2E-08 1.8E-12 96.0 20.4 237 339-597 82-359 (426)
294 2ece_A 462AA long hypothetical 99.0 6.3E-08 2.2E-12 94.2 20.4 205 388-596 93-351 (462)
295 4a0k_B E3 ubiquitin-protein li 98.9 8.5E-11 2.9E-15 91.2 0.2 46 38-83 48-111 (117)
296 3hxj_A Pyrrolo-quinoline quino 98.9 5.6E-08 1.9E-12 93.9 19.9 216 341-595 107-322 (330)
297 2qe8_A Uncharacterized protein 98.9 1.9E-08 6.5E-13 97.8 15.6 205 327-540 64-317 (343)
298 3mbr_X Glutamine cyclotransfer 98.9 2.9E-07 9.8E-12 82.3 21.8 198 374-586 14-223 (243)
299 2iwa_A Glutamine cyclotransfer 98.9 2E-07 6.9E-12 85.2 21.2 195 330-546 21-239 (266)
300 3nok_A Glutaminyl cyclase; bet 98.9 4.8E-08 1.6E-12 88.0 16.1 190 380-586 56-254 (268)
301 3iuj_A Prolyl endopeptidase; h 98.9 9.9E-08 3.4E-12 102.2 20.9 204 378-596 128-358 (693)
302 3v64_C Agrin; beta propeller, 98.9 2.1E-06 7.1E-11 83.3 28.0 233 332-594 36-272 (349)
303 1kb0_A Quinohemoprotein alcoho 98.9 1.1E-07 3.7E-12 101.0 20.1 239 340-597 127-507 (677)
304 3v65_B Low-density lipoprotein 98.8 2.6E-06 8.8E-11 83.9 27.8 231 334-594 81-315 (386)
305 1kb0_A Quinohemoprotein alcoho 98.8 3.4E-07 1.2E-11 97.2 22.9 181 382-583 246-536 (677)
306 2d8s_A Cellular modulator of i 98.8 1.3E-09 4.6E-14 78.6 3.0 53 34-86 11-72 (80)
307 2fp8_A Strictosidine synthase; 98.8 1.2E-06 4.1E-11 84.2 24.7 252 331-596 20-312 (322)
308 2p4o_A Hypothetical protein; p 98.8 2.3E-06 7.8E-11 81.5 26.1 223 330-585 32-276 (306)
309 1yiq_A Quinohemoprotein alcoho 98.8 3.7E-07 1.3E-11 97.1 22.4 238 341-597 121-505 (689)
310 3q7m_A Lipoprotein YFGL, BAMB; 98.8 1.2E-06 4E-11 86.4 24.7 227 340-596 52-295 (376)
311 3nol_A Glutamine cyclotransfer 98.8 8.3E-07 2.8E-11 80.0 20.6 181 329-533 42-244 (262)
312 1ijq_A LDL receptor, low-densi 98.8 9.8E-06 3.3E-10 77.4 29.5 223 344-595 4-236 (316)
313 3v64_C Agrin; beta propeller, 98.8 4.3E-06 1.5E-10 81.0 27.2 208 329-552 72-283 (349)
314 3v65_B Low-density lipoprotein 98.8 2.4E-06 8.3E-11 84.1 25.4 208 329-552 115-326 (386)
315 3q7m_A Lipoprotein YFGL, BAMB; 98.8 1E-06 3.6E-11 86.7 22.3 219 340-596 102-336 (376)
316 3mbr_X Glutamine cyclotransfer 98.7 4.2E-06 1.4E-10 74.8 23.2 184 328-533 19-223 (243)
317 3hxj_A Pyrrolo-quinoline quino 98.7 3.1E-07 1E-11 88.7 16.2 222 330-594 60-281 (330)
318 1yiq_A Quinohemoprotein alcoho 98.7 1.8E-06 6.2E-11 91.8 23.0 178 383-583 239-534 (689)
319 3p5b_L Low density lipoprotein 98.7 3.5E-05 1.2E-09 76.1 29.9 225 343-594 85-317 (400)
320 3nok_A Glutaminyl cyclase; bet 98.7 5.8E-06 2E-10 74.5 21.7 182 328-532 53-253 (268)
321 1fwx_A Nitrous oxide reductase 98.7 3.9E-07 1.3E-11 91.9 15.3 230 339-585 99-406 (595)
322 3tc9_A Hypothetical hydrolase; 98.6 8E-06 2.7E-10 81.5 24.9 247 330-596 137-429 (430)
323 3sov_A LRP-6, low-density lipo 98.6 2.8E-05 9.4E-10 74.1 27.5 219 350-595 12-236 (318)
324 4hw6_A Hypothetical protein, I 98.6 1.5E-05 5.2E-10 79.5 25.9 248 330-596 139-432 (433)
325 3p5b_L Low density lipoprotein 98.6 5.9E-05 2E-09 74.5 29.7 214 328-552 110-328 (400)
326 1ijq_A LDL receptor, low-densi 98.6 5E-05 1.7E-09 72.4 27.6 209 329-551 29-245 (316)
327 3sov_A LRP-6, low-density lipo 98.6 3.7E-05 1.3E-09 73.2 26.4 206 331-551 36-245 (318)
328 1fwx_A Nitrous oxide reductase 98.6 1.9E-06 6.5E-11 87.0 17.6 190 391-596 101-360 (595)
329 4a2l_A BT_4663, two-component 98.5 5.9E-05 2E-09 82.2 30.4 243 329-595 214-478 (795)
330 3qqz_A Putative uncharacterize 98.5 4.9E-05 1.7E-09 69.0 24.7 204 378-594 26-250 (255)
331 2xe4_A Oligopeptidase B; hydro 98.5 2E-05 6.8E-10 85.0 25.9 197 331-542 175-398 (751)
332 3qqz_A Putative uncharacterize 98.5 6.7E-05 2.3E-09 68.1 24.6 201 326-542 23-251 (255)
333 4a2l_A BT_4663, two-component 98.5 9.7E-05 3.3E-09 80.5 30.4 238 329-595 356-612 (795)
334 1mda_H Methylamine dehydrogena 98.5 1.7E-06 5.7E-11 83.9 14.5 195 332-554 126-356 (368)
335 3kya_A Putative phosphatase; s 98.5 0.00012 4.1E-09 73.1 27.2 246 331-596 140-474 (496)
336 3m0c_C LDL receptor, low-densi 98.4 0.00014 4.7E-09 77.8 29.1 218 350-594 403-629 (791)
337 1kv9_A Type II quinohemoprotei 98.4 1.2E-05 4.1E-10 85.2 20.4 237 341-597 117-488 (668)
338 2fp8_A Strictosidine synthase; 98.4 1.6E-05 5.6E-10 76.2 19.6 185 379-586 19-248 (322)
339 1k3i_A Galactose oxidase precu 98.4 8.1E-06 2.8E-10 86.7 18.9 240 334-596 190-496 (656)
340 2ad6_A Methanol dehydrogenase 98.4 2.6E-05 9E-10 80.8 21.7 237 341-597 115-494 (571)
341 3m0c_C LDL receptor, low-densi 98.4 0.00012 4.2E-09 78.2 27.2 212 328-551 422-639 (791)
342 1n7d_A LDL receptor, low-densi 98.4 3E-06 1E-10 90.1 14.0 219 350-595 385-612 (699)
343 3v9f_A Two-component system se 98.4 0.0002 6.9E-09 77.8 28.5 241 329-595 312-566 (781)
344 1n7d_A LDL receptor, low-densi 98.4 3.9E-06 1.3E-10 89.2 14.4 212 329-552 405-622 (699)
345 1k3i_A Galactose oxidase precu 98.3 1.2E-05 4E-10 85.5 17.7 237 332-586 245-530 (656)
346 2p4o_A Hypothetical protein; p 98.3 0.00018 6.2E-09 68.2 24.4 195 379-595 32-240 (306)
347 1kv9_A Type II quinohemoprotei 98.3 8.2E-05 2.8E-09 78.8 22.4 161 383-554 234-498 (668)
348 2jun_A Midline-1; B-BOX, TRIM, 98.3 4.4E-07 1.5E-11 69.8 3.4 82 37-142 2-87 (101)
349 3v9f_A Two-component system se 98.3 0.00031 1.1E-08 76.2 27.2 237 329-595 362-609 (781)
350 4a0p_A LRP6, LRP-6, low-densit 98.3 0.00059 2E-08 71.3 28.0 222 343-594 8-234 (628)
351 2ism_A Putative oxidoreductase 98.3 0.00038 1.3E-08 67.4 24.8 238 330-585 31-333 (352)
352 2ct0_A Non-SMC element 1 homol 98.2 1.4E-06 4.8E-11 61.1 5.4 46 38-83 15-63 (74)
353 2ad6_A Methanol dehydrogenase 98.2 0.0001 3.5E-09 76.4 21.7 62 492-554 443-504 (571)
354 4a0p_A LRP6, LRP-6, low-densit 98.2 0.00058 2E-08 71.4 27.2 206 329-551 36-244 (628)
355 3vk6_A E3 ubiquitin-protein li 98.2 6.9E-07 2.4E-11 64.9 3.3 45 40-84 3-49 (101)
356 3amr_A 3-phytase; beta-propell 98.2 0.0002 7E-09 67.4 20.4 189 391-596 40-262 (355)
357 1w6s_A Methanol dehydrogenase 98.2 0.00014 4.8E-09 75.4 21.0 242 335-597 111-503 (599)
358 4hw6_A Hypothetical protein, I 98.2 0.00022 7.5E-09 71.1 21.2 209 379-594 139-371 (433)
359 2xzh_A Clathrin heavy chain 1; 98.2 0.0021 7.1E-08 59.3 25.4 231 334-593 71-328 (365)
360 3s94_A LRP-6, low-density lipo 98.1 0.00063 2.2E-08 71.0 25.2 220 349-595 16-241 (619)
361 2g8s_A Glucose/sorbosone dehyd 98.1 0.002 6.8E-08 62.2 26.9 252 331-596 19-351 (353)
362 1bpo_A Protein (clathrin); cla 98.1 0.005 1.7E-07 59.2 27.9 231 334-593 70-327 (494)
363 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.6E-06 5.4E-11 58.5 3.0 48 37-84 5-59 (60)
364 3tc9_A Hypothetical hydrolase; 98.1 0.00036 1.2E-08 69.5 21.4 158 380-544 138-301 (430)
365 3a9g_A Putative uncharacterize 98.1 0.0024 8.2E-08 61.6 26.3 241 330-585 29-330 (354)
366 3amr_A 3-phytase; beta-propell 98.1 0.002 6.8E-08 60.7 24.3 197 340-555 39-275 (355)
367 1w6s_A Methanol dehydrogenase 98.0 0.00059 2E-08 70.7 22.4 63 491-554 451-513 (599)
368 3s94_A LRP-6, low-density lipo 98.0 0.0036 1.2E-07 65.3 28.5 189 343-546 319-512 (619)
369 1flg_A Protein (quinoprotein e 98.0 0.00055 1.9E-08 71.0 22.1 134 451-597 291-516 (582)
370 2xe4_A Oligopeptidase B; hydro 98.0 0.00043 1.5E-08 74.6 21.8 196 380-594 175-395 (751)
371 2xbg_A YCF48-like protein; pho 98.0 0.0065 2.2E-07 58.0 28.0 234 329-594 79-319 (327)
372 2p9w_A MAL S 1 allergenic prot 98.0 0.0011 3.8E-08 61.8 21.2 163 379-544 13-215 (334)
373 1flg_A Protein (quinoprotein e 98.0 0.0013 4.5E-08 68.1 23.5 80 492-582 465-544 (582)
374 2p9w_A MAL S 1 allergenic prot 98.0 0.00055 1.9E-08 63.9 18.3 165 418-596 9-214 (334)
375 2vpj_A Kelch-like protein 12; 97.9 0.00093 3.2E-08 63.1 19.8 190 390-596 62-277 (301)
376 3m62_A Ubiquitin conjugation f 97.9 1.2E-05 4.2E-10 84.5 6.6 72 33-104 886-958 (968)
377 2xzh_A Clathrin heavy chain 1; 97.9 0.0062 2.1E-07 56.2 23.1 215 350-597 48-290 (365)
378 3k1l_B Fancl; UBC, ring, RWD, 97.9 3.9E-06 1.3E-10 76.5 1.9 48 36-83 306-372 (381)
379 3kya_A Putative phosphatase; s 97.8 0.0015 5E-08 65.3 20.1 212 380-594 140-407 (496)
380 2xn4_A Kelch-like protein 2; s 97.8 0.0013 4.3E-08 62.2 17.9 188 390-596 61-275 (302)
381 1bpo_A Protein (clathrin); cla 97.7 0.016 5.6E-07 55.7 24.1 215 350-597 47-289 (494)
382 2xbg_A YCF48-like protein; pho 97.7 0.0094 3.2E-07 56.8 23.1 189 330-541 122-319 (327)
383 3das_A Putative oxidoreductase 97.7 0.037 1.3E-06 52.6 27.5 245 329-585 31-326 (347)
384 3ii7_A Kelch-like protein 7; p 97.7 0.0046 1.6E-07 58.4 20.8 231 342-596 13-271 (306)
385 3sre_A PON1, serum paraoxonase 97.5 0.013 4.6E-07 55.9 21.1 171 399-587 81-287 (355)
386 1zgk_A Kelch-like ECH-associat 97.5 0.0055 1.9E-07 57.9 18.1 230 340-596 24-286 (308)
387 1xi4_A Clathrin heavy chain; a 97.5 0.0063 2.1E-07 67.4 20.0 202 335-554 71-299 (1630)
388 4asc_A Kelch repeat and BTB do 97.5 0.017 5.8E-07 54.7 21.1 191 344-548 8-225 (315)
389 2vpj_A Kelch-like protein 12; 97.3 0.014 4.8E-07 54.8 18.4 195 340-546 62-280 (301)
390 3ott_A Two-component system se 97.3 0.069 2.3E-06 57.6 25.8 227 329-595 21-258 (758)
391 3ei3_A DNA damage-binding prot 97.3 0.098 3.4E-06 58.6 27.3 181 402-597 808-999 (1158)
392 2xn4_A Kelch-like protein 2; s 97.3 0.0096 3.3E-07 56.0 16.6 196 340-547 61-279 (302)
393 2ism_A Putative oxidoreductase 97.2 0.034 1.2E-06 53.5 20.2 147 379-532 31-221 (352)
394 2woz_A Kelch repeat and BTB do 97.2 0.02 6.8E-07 54.3 18.0 152 390-548 56-235 (318)
395 1cru_A Protein (soluble quinop 97.1 0.21 7.3E-06 49.7 25.5 112 330-442 27-163 (454)
396 3ei3_A DNA damage-binding prot 97.0 0.25 8.4E-06 55.4 27.0 238 338-596 283-590 (1158)
397 3ii7_A Kelch-like protein 7; p 97.0 0.023 7.7E-07 53.5 16.3 194 340-547 55-275 (306)
398 3pbp_A Nucleoporin NUP82; beta 97.0 0.029 9.8E-07 54.1 16.4 140 450-591 40-206 (452)
399 3pbp_A Nucleoporin NUP82; beta 96.9 0.077 2.6E-06 51.1 18.9 140 390-540 31-208 (452)
400 3a9g_A Putative uncharacterize 96.9 0.27 9.3E-06 47.1 22.9 211 379-596 29-295 (354)
401 2wg3_C Hedgehog-interacting pr 96.9 0.44 1.5E-05 47.4 27.7 250 331-585 15-354 (463)
402 3sre_A PON1, serum paraoxonase 96.8 0.062 2.1E-06 51.3 17.7 159 423-596 51-251 (355)
403 1xi4_A Clathrin heavy chain; a 96.7 0.053 1.8E-06 60.4 17.5 222 350-597 47-289 (1630)
404 2woz_A Kelch repeat and BTB do 96.7 0.082 2.8E-06 49.9 17.4 153 390-548 109-291 (318)
405 1zgk_A Kelch-like ECH-associat 96.6 0.05 1.7E-06 51.2 15.6 192 340-547 70-290 (308)
406 2uvk_A YJHT; unknown function, 96.6 0.073 2.5E-06 51.2 17.0 201 340-548 19-298 (357)
407 4asc_A Kelch repeat and BTB do 96.6 0.061 2.1E-06 50.8 15.7 188 393-596 7-220 (315)
408 1tl2_A L10, protein (tachylect 96.4 0.096 3.3E-06 45.5 14.3 142 379-537 41-203 (236)
409 2zwa_A Leucine carboxyl methyl 96.2 0.27 9.1E-06 52.1 19.5 202 339-548 396-639 (695)
410 2g8s_A Glucose/sorbosone dehyd 95.9 1.3 4.5E-05 42.3 21.8 149 379-530 18-214 (353)
411 2uvk_A YJHT; unknown function, 95.9 0.22 7.6E-06 47.8 15.8 148 401-553 168-351 (357)
412 2be1_A Serine/threonine-protei 95.8 0.028 9.6E-07 53.1 8.6 147 391-546 10-185 (339)
413 3nw0_A Non-structural maintena 95.7 0.0061 2.1E-07 54.2 3.6 46 38-83 180-228 (238)
414 1tl2_A L10, protein (tachylect 95.6 0.032 1.1E-06 48.5 7.3 109 473-590 41-156 (236)
415 2zwa_A Leucine carboxyl methyl 95.4 0.52 1.8E-05 49.9 17.6 155 390-546 397-579 (695)
416 3ott_A Two-component system se 95.4 3.7 0.00013 44.0 30.7 237 330-595 146-399 (758)
417 2be1_A Serine/threonine-protei 95.3 0.3 1E-05 46.1 13.7 189 342-549 11-236 (339)
418 1cru_A Protein (soluble quinop 95.3 2.1 7.3E-05 42.4 20.6 103 422-533 27-163 (454)
419 2ko5_A Ring finger protein Z; 95.0 0.036 1.2E-06 39.5 4.8 53 30-84 20-73 (99)
420 1weo_A Cellulose synthase, cat 94.9 0.037 1.3E-06 39.0 4.5 45 39-83 17-69 (93)
421 3sbq_A Nitrous-oxide reductase 94.8 3.8 0.00013 41.0 22.9 74 515-596 324-407 (638)
422 2cs3_A Protein C14ORF4, MY039 94.7 0.015 5E-07 39.8 2.0 33 38-70 15-51 (93)
423 3s25_A Hypothetical 7-bladed b 94.4 3.2 0.00011 38.4 21.3 126 401-546 88-218 (302)
424 3das_A Putative oxidoreductase 93.5 5.2 0.00018 37.8 24.3 147 378-531 31-219 (347)
425 3b7f_A Glycosyl hydrolase, BNR 93.5 5.9 0.0002 38.3 26.2 160 329-499 54-259 (394)
426 3i2d_A E3 SUMO-protein ligase 93.2 0.065 2.2E-06 50.2 4.0 63 37-99 248-315 (371)
427 3qhy_B Beta-lactamase inhibito 93.1 5.1 0.00017 36.7 21.2 219 331-594 25-243 (282)
428 4fo9_A E3 SUMO-protein ligase 92.5 0.094 3.2E-06 49.0 4.0 63 36-98 213-280 (360)
429 2gmg_A Hypothetical protein PF 88.6 0.14 4.8E-06 37.8 1.2 30 49-83 66-95 (105)
430 3b7f_A Glycosyl hydrolase, BNR 88.2 19 0.00065 34.6 25.0 183 342-541 23-259 (394)
431 3s25_A Hypothetical 7-bladed b 87.3 18 0.00061 33.4 20.8 175 335-544 58-255 (302)
432 4gq2_M Nucleoporin NUP120; bet 87.2 7.6 0.00026 42.6 14.3 40 515-554 237-276 (950)
433 3mjh_B Early endosome antigen 86.3 0.1 3.5E-06 29.7 -0.5 17 37-53 4-20 (34)
434 3sbq_A Nitrous-oxide reductase 86.1 6 0.00021 39.6 11.3 122 403-532 300-453 (638)
435 2k5c_A Uncharacterized protein 84.6 0.32 1.1E-05 33.3 1.1 52 39-90 9-69 (95)
436 3q6k_A 43.2 kDa salivary prote 84.3 29 0.001 33.1 18.8 165 402-584 124-341 (381)
437 2wg3_C Hedgehog-interacting pr 84.3 8.4 0.00029 38.1 11.8 109 473-588 14-160 (463)
438 1wil_A KIAA1045 protein; ring 83.9 1.8 6.3E-05 30.2 4.6 35 33-68 10-47 (89)
439 1sqj_A OXG-RCBH, oligoxylogluc 83.9 49 0.0017 35.3 25.7 153 329-492 14-190 (789)
440 3ghg_A Fibrinogen alpha chain; 83.6 6.8 0.00023 38.0 10.0 11 254-264 179-189 (562)
441 1weu_A Inhibitor of growth fam 81.8 2.7 9.2E-05 30.5 5.1 48 33-83 31-87 (91)
442 3uc1_A DNA gyrase subunit A; D 81.3 35 0.0012 31.8 25.2 206 329-544 41-279 (327)
443 1zi0_A DNA gyrase subunit A; b 81.1 34 0.0012 31.5 19.2 198 388-596 1-225 (307)
444 4gq2_M Nucleoporin NUP120; bet 80.3 26 0.0009 38.4 14.9 39 379-418 236-274 (950)
445 2o35_A Hypothetical protein DU 80.0 0.62 2.1E-05 33.6 1.2 12 59-70 42-53 (105)
446 3fyb_A Protein of unknown func 79.9 0.62 2.1E-05 33.5 1.2 12 59-70 41-52 (104)
447 3qhy_B Beta-lactamase inhibito 78.8 38 0.0013 30.7 20.4 187 331-548 64-250 (282)
448 3hnw_A Uncharacterized protein 78.0 24 0.00082 27.9 10.2 31 174-204 101-131 (138)
449 4hvt_A Ritya.17583.B, post-pro 77.4 75 0.0026 33.4 24.4 202 333-546 132-383 (711)
450 1gmj_A ATPase inhibitor; coile 76.2 18 0.0006 25.5 9.0 40 156-195 38-77 (84)
451 1suu_A DNA gyrase subunit A; t 75.5 51 0.0017 30.4 22.1 110 483-596 114-230 (312)
452 2jne_A Hypothetical protein YF 74.9 0.25 8.7E-06 35.5 -1.9 41 38-83 32-72 (101)
453 1y02_A CARP2, FYVE-ring finger 74.2 1 3.5E-05 34.7 1.1 32 38-69 19-54 (120)
454 3hnw_A Uncharacterized protein 72.7 30 0.001 27.4 9.3 43 168-210 88-130 (138)
455 3zwu_A Alkaline phosphatase PH 72.5 69 0.0024 32.7 14.3 58 474-531 477-548 (592)
456 3i00_A HIP-I, huntingtin-inter 72.3 29 0.001 26.6 8.8 36 156-191 27-62 (120)
457 2lri_C Autoimmune regulator; Z 72.2 5.4 0.00018 26.9 4.2 46 36-83 10-61 (66)
458 2jrp_A Putative cytoplasmic pr 71.6 0.37 1.3E-05 33.8 -1.7 40 39-83 3-42 (81)
459 3u1c_A Tropomyosin alpha-1 cha 70.2 30 0.001 25.6 9.1 56 153-208 4-62 (101)
460 1wfl_A Zinc finger protein 216 70.2 6.5 0.00022 26.9 4.1 26 38-63 25-51 (74)
461 3nmd_A CGMP dependent protein 68.8 24 0.00084 23.9 7.2 24 178-201 42-65 (72)
462 3ghg_A Fibrinogen alpha chain; 68.5 11 0.00037 36.7 6.9 17 147-163 60-76 (562)
463 1ci6_A Transcription factor AT 67.8 24 0.00081 23.4 7.7 39 167-205 21-59 (63)
464 1m1j_A Fibrinogen alpha subuni 67.7 42 0.0014 32.1 10.4 7 256-262 182-188 (491)
465 1suu_A DNA gyrase subunit A; t 67.0 79 0.0027 29.1 25.3 195 339-544 6-231 (312)
466 2cn3_A Xyloglucanase, beta-1,4 66.9 1.3E+02 0.0045 31.7 24.3 110 330-441 23-151 (737)
467 2lbm_A Transcriptional regulat 66.8 6 0.00021 31.4 4.1 43 38-80 63-116 (142)
468 3zyq_A Hepatocyte growth facto 66.6 3.3 0.00011 36.4 2.8 30 38-67 164-197 (226)
469 2wt7_A Proto-oncogene protein 66.3 26 0.00088 23.2 7.4 43 164-206 18-60 (63)
470 2cn3_A Xyloglucanase, beta-1,4 65.3 1.4E+02 0.0048 31.4 22.2 111 380-491 24-152 (737)
471 1z60_A TFIIH basal transcripti 65.3 5.1 0.00017 26.2 2.8 40 39-78 16-58 (59)
472 1gd2_E Transcription factor PA 64.8 30 0.001 23.5 8.6 46 162-207 22-67 (70)
473 2jmo_A Parkin; IBR, E3 ligase, 64.5 0.61 2.1E-05 33.2 -1.9 37 38-76 25-74 (80)
474 2dfs_A Myosin-5A; myosin-V, in 64.2 44 0.0015 37.0 11.6 16 249-264 1028-1043(1080)
475 4a9v_A PHOX; hydrolase, beta-p 64.2 18 0.00062 36.5 7.9 60 515-584 477-548 (592)
476 2ct7_A Ring finger protein 31; 64.1 0.72 2.5E-05 33.3 -1.6 28 41-68 28-61 (86)
477 3no0_A DNA gyrase subunit A; D 63.1 86 0.003 28.2 23.4 200 328-544 22-246 (276)
478 1wfk_A Zinc finger, FYVE domai 62.8 3.2 0.00011 30.0 1.7 32 36-67 7-42 (88)
479 1zbd_B Rabphilin-3A; G protein 62.5 2.2 7.4E-05 33.7 0.8 31 36-66 53-88 (134)
480 1deq_A Fibrinogen (alpha chain 62.4 94 0.0032 29.0 11.4 17 149-165 65-81 (390)
481 3zwu_A Alkaline phosphatase PH 62.3 16 0.00056 37.2 7.3 59 516-584 478-548 (592)
482 1m3v_A FLIN4, fusion of the LI 61.9 5.6 0.00019 30.9 3.1 49 39-87 33-84 (122)
483 4fhn_B Nucleoporin NUP120; pro 61.0 13 0.00045 41.8 7.1 124 470-597 171-319 (1139)
484 3u59_A Tropomyosin beta chain; 60.3 49 0.0017 24.4 9.1 53 154-206 5-60 (101)
485 1mm2_A MI2-beta; PHD, zinc fin 59.9 3.8 0.00013 27.1 1.5 44 36-82 7-57 (61)
486 1z2q_A LM5-1; membrane protein 59.6 7 0.00024 27.9 3.0 31 37-67 20-54 (84)
487 2oqq_A Transcription factor HY 59.4 25 0.00085 20.7 5.9 17 183-199 17-33 (42)
488 3f7f_A Nucleoporin NUP120; nuc 58.7 44 0.0015 34.8 9.8 33 522-554 228-260 (729)
489 6rxn_A Rubredoxin; electron tr 58.5 4.4 0.00015 24.9 1.5 33 39-81 5-39 (46)
490 3r2p_A Apolipoprotein A-I; amp 58.1 25 0.00084 29.6 6.7 96 146-265 88-184 (185)
491 2yw8_A RUN and FYVE domain-con 56.8 4.5 0.00015 28.7 1.6 30 38-67 19-52 (82)
492 1vfy_A Phosphatidylinositol-3- 56.5 5.4 0.00018 27.6 1.9 27 40-66 13-43 (73)
493 1gk4_A Vimentin; intermediate 56.5 50 0.0017 23.4 10.0 52 152-203 9-60 (84)
494 1wt6_A Myotonin-protein kinase 56.5 47 0.0016 23.0 9.6 39 170-208 32-70 (81)
495 2w6a_A ARF GTPase-activating p 56.4 36 0.0012 21.7 5.7 11 187-197 31-41 (63)
496 2w83_C C-JUN-amino-terminal ki 56.4 45 0.0015 22.8 6.6 51 157-207 25-75 (77)
497 3t7l_A Zinc finger FYVE domain 55.1 4 0.00014 29.6 1.1 25 40-64 22-50 (90)
498 3s84_A Apolipoprotein A-IV; fo 55.0 1.2E+02 0.0041 27.3 12.0 96 146-265 43-139 (273)
499 3oja_B Anopheles plasmodium-re 54.1 68 0.0023 32.8 10.7 76 137-213 506-581 (597)
500 3oja_B Anopheles plasmodium-re 53.9 38 0.0013 34.8 8.7 88 146-233 483-580 (597)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.9e-40 Score=330.41 Aligned_cols=252 Identities=17% Similarity=0.279 Sum_probs=228.8
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|.++|++++|+|++.+|++|+.||+|+|||+.++ .......+|...|++++|+| ++.+|++|+.||.|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-------~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-------DFERTLKGHTDSVQDISFDH-SGKLLASCSADMTI 174 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-------CCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCC
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeE
Confidence 35589999999999999999999999999999999876 33344557889999999999 78999999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-----------------------------------cC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-----------------------------------GS 448 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-----------------------------------~~ 448 (597)
+|||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.+ ++
T Consensus 175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 175 KLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp CEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 9999999999999999999999999999 88999999999877 67
Q ss_pred CCCeEEEEEccCCCcceeeeccCCCceEEEEecCC---------------------CeEEEeeCCCcEEEEEcCCCccee
Q 042883 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN---------------------NELASASTDSSLRLWDVKENLPLH 507 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~---------------------~~l~s~~~d~~v~iwd~~~~~~~~ 507 (597)
.|+.|++||+++ +.....+.+|...|.+++|+|+ .+|++|+.|+.|++||++++..+.
T Consensus 254 ~D~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 254 NDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp TTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 889999999987 6777888899999999999984 369999999999999999999999
Q ss_pred eeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 508 TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 508 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
.+.+|...|.+++|+|+|.+|++|+.||.|++||+.+++.+..+. +|...|++++|+|++.+|++|+.|
T Consensus 333 ~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-----------~h~~~v~~l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-----------AHEHFVTSLDFHKTAPYVVTGSVD 401 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-----------CCSSCEEEEEECSSSSCEEEEETT
T ss_pred EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-----------CCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999999999999999999999999999999999999888777664 368899999999999999999999
Q ss_pred ccEEEEEec
Q 042883 588 GAIKVLVLA 596 (597)
Q Consensus 588 g~v~iwd~~ 596 (597)
|+|+||+++
T Consensus 402 ~~i~vW~~r 410 (410)
T 1vyh_C 402 QTVKVWECR 410 (410)
T ss_dssp SEEEEEC--
T ss_pred CcEEEEeCC
Confidence 999999974
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-39 Score=310.82 Aligned_cols=246 Identities=17% Similarity=0.298 Sum_probs=218.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|++++|+|++.+|++|+.||+|++||+.++ ........|..+|.+++|+| ++++|++|+.|+.|+
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------VEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIR 80 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------ceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEE
Confidence 3479999999999999999999999999999999876 22234446788999999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+||+.+++.+..+.+|...|++++|+| ++.++++|+.|+. |++||+++.......+.+|...|.+++|+|.
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~-------v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLT-------VKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSC-------EEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCe-------EEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 999999999999999999999999999 8889999996655 9999999754666778899999999999994
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEee--cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLTV--NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
..|++|+.|++|++||++.+.....+. +|...+..+.|+| ++.+|++|+.|+.|++||+.+++.+..+.
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~------- 225 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE------- 225 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-------
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-------
Confidence 689999999999999999887766665 5567889999987 67899999999999999999988877665
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+|...|++++|+|++++|++|+.||+|+|||+.+
T Consensus 226 ----~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 226 ----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp ----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred ----CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4688999999999999999999999999999753
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.5e-39 Score=313.31 Aligned_cols=246 Identities=14% Similarity=0.171 Sum_probs=207.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.|...|++++|+|++ .|++|+.||+|+|||+.++.... .......+|...|++|+|+| ++++|++|+.||.|++|
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~---~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI---VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVW 154 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE---EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee---EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 466789999999985 68899999999999998761100 01122347899999999999 79999999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec--cCCCceEEEEecCC-
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--GHKKAVSYVKFLSN- 483 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~- 483 (597)
|+.+++.+..+.+|...|++++|+|++..+|++++.|+. |++||+++ ++....+. .|...+.+++|+|+
T Consensus 155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~-------v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (344)
T 4gqb_B 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-------ILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQ 226 (344)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSC-------EEEEETTS-SSCEEECC----CCCEEEEEECSSC
T ss_pred ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccc-------cccccccc-cceeeeeecceeeccceeeeecCCC
Confidence 999999999999999999999999966678999986655 99999998 66666654 45567999999996
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD 561 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 561 (597)
.+|++|+.||.|+|||+++++.+..+.+|...|++++|+|+| ++|++|+.|+.|+|||+.+++....
T Consensus 227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~----------- 295 (344)
T 4gqb_B 227 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS----------- 295 (344)
T ss_dssp TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-----------
T ss_pred CcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-----------
Confidence 578899999999999999999999999999999999999997 5899999999999999988875432
Q ss_pred CcCCCcceEEEEEccCCCe-EEEecCcccEEEEEecC
Q 042883 562 DDMGSYFISAVCWKSDSPT-MLTANRKGAIKVLVLAA 597 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~-l~s~~~dg~v~iwd~~~ 597 (597)
.+|...|++++|+|++.. |++|+.||+|++|++.+
T Consensus 296 -~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 296 -QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp -CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred -cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 147899999999999875 66899999999999853
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=307.50 Aligned_cols=244 Identities=16% Similarity=0.222 Sum_probs=222.6
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|...|.+++|++++.++++++.|++|++||+.++ ........+...+.+++|+| ++.+|++|+.||.|+
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~-------~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~ 147 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG-------KQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVN 147 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEE
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC-------CEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEE
Confidence 5689999999999999999999999999999999876 22223345677899999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+||+.++.....+..+...|.+++|+| ++.+|++++.|+. |++||+++ ++.+..+.+|...|.+++|+|+
T Consensus 148 i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~-------i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGI-------INIFDIAT-GKLLHTLEGHAMPIRSLTFSPDS 218 (321)
T ss_dssp EEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSC-------EEEEETTT-TEEEEEECCCSSCCCEEEECTTS
T ss_pred EEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCe-------EEEEECCC-CcEEEEEcccCCceeEEEEcCCC
Confidence 999999999989989999999999999 8899999986555 99999997 7888889999999999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|+|.+|++++.|+.|++||+.+++.+..+.
T Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----------- 287 (321)
T 3ow8_A 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF----------- 287 (321)
T ss_dssp CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-----------
Confidence 789999999999999999999999999999999999999999999999999999999999988877664
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|++++|+|++.+|++++.||.|+|||+.
T Consensus 288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 368899999999999999999999999999963
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5e-38 Score=305.61 Aligned_cols=247 Identities=14% Similarity=0.283 Sum_probs=218.2
Q ss_pred ccCCCCcEEEEEEcCC----CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC
Q 042883 325 LFHAANIISSIEFDRD----DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~----~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d 400 (597)
..+|.+.|++++|+|+ +.+|++|+.|++|+||++.... ........+|...|.+++|++ ++.++++|+.|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-----~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D 101 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-----LDLQWSLEGHQLGVVSVDISH-TLPIAASSSLD 101 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECS-SSSEEEEEETT
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-----eeeeeeeccCCCCEEEEEECC-CCCEEEEEeCC
Confidence 3579999999999984 6789999999999999987641 011123457889999999999 78899999999
Q ss_pred CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEe
Q 042883 401 GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKF 480 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~ 480 (597)
+.|++||+.+++.+..+..+...+.+++|+| ++.++++++.|+ .|++||++. +.....+..|...|.+++|
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg-------~v~i~~~~~-~~~~~~~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVG-------KVNIFGVES-GKKEYSLDTRGKFILSIAY 172 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTS-------EEEEEETTT-CSEEEEEECSSSCEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCC-------cEEEEEcCC-CceeEEecCCCceEEEEEE
Confidence 9999999999999999999999999999999 889999998655 499999997 6677778888999999999
Q ss_pred cCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 481 LSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 481 ~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
+|+ .+|++|+.||.|++||+++++.+..+.+|...|++++|+|+|.+|++|+.|+.|++||+.+++....+.
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~------- 245 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS------- 245 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-------
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-------
Confidence 999 789999999999999999999999999999999999999999999999999999999999887766553
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+|...|++++|+|++.+|++|+.||+|+|||+.+
T Consensus 246 ----~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 246 ----GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 3688999999999999999999999999999853
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-37 Score=304.52 Aligned_cols=246 Identities=19% Similarity=0.256 Sum_probs=216.0
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|.+.|++++|+|++++|++|+.||+|+|||+.++ ........|...|.+++|+| ++.+|++|+.|+.|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v 121 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-------NKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNIC 121 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-------CEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-------CcceEeecCCccEEEEEECC-CCCEEEEEeCCCeE
Confidence 35589999999999999999999999999999998876 22334456788999999999 78999999999999
Q ss_pred EEEeCCCC----eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 404 TIWDVTTS----QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 404 ~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
++||+.++ .....+.+|.+.|.++.|++ ++. +++++.|+ .|++||+.+ +..+..+.+|.+.|.+++
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~s~d~-------~i~~wd~~~-~~~~~~~~~h~~~v~~~~ 191 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQ-IVTSSGDT-------TCALWDIET-GQQTTTFTGHTGDVMSLS 191 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TTE-EEEEETTS-------CEEEEETTT-TEEEEEECCCSSCEEEEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECC-CCc-EEEEECCC-------cEEEEECCC-CcEEEEEcCCCCceEEEE
Confidence 99999765 35567788999999999997 554 77777554 499999997 778888999999999999
Q ss_pred ecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCC
Q 042883 480 FLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
|+|+ .+|++|+.|+.|++||++++..+..+.+|...|++++|+|+|.+|++|+.||.|++||+++++.+..+...
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---- 267 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---- 267 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT----
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC----
Confidence 9999 78999999999999999999999999999999999999999999999999999999999988776554321
Q ss_pred CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 559 HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+...|++++|+|+|.+|++|+.||.|+|||+.
T Consensus 268 -----~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 268 -----NIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp -----TCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -----CcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 124579999999999999999999999999974
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-38 Score=317.40 Aligned_cols=258 Identities=16% Similarity=0.284 Sum_probs=212.4
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|.+.|++++|+|++++|++|+.||+|+|||+.++ ........|...|.+++|+| ++.+|++|+.|+.|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v 132 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-------QKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSAC 132 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-------EEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCC
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcE
Confidence 34589999999999999999999999999999999876 22334456888999999999 79999999999999
Q ss_pred EEEeCCCCe-------eeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------------------------
Q 042883 404 TIWDVTTSQ-------SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------ 446 (597)
Q Consensus 404 ~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------ 446 (597)
++||+.+.. ....+.+|.+.|.++.|.|.++..+++|+.|+.+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 999986421 2234456666666666666445556666665544
Q ss_pred -----------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCC-
Q 042883 447 -----------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHT- 513 (597)
Q Consensus 447 -----------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~- 513 (597)
|+.|+.|++||++.....+..+.+|.+.|.+++|+|+ .+|++|+.||+|++||+++++.+..+..+.
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence 4457779999998657788899999999999999999 789999999999999999998888776443
Q ss_pred ------CceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 514 ------NEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 514 ------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
..+++++|+|+|.+|++|+.||.|++||+..++.+..+... ..+|...|++++|+|+|.+|++|+.|
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-------QNSHEGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS-------CSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc-------cCCCCCceEEEEECCCCCEEEEeeCC
Confidence 24889999999999999999999999999888776544211 12478899999999999999999999
Q ss_pred ccEEEEEec
Q 042883 588 GAIKVLVLA 596 (597)
Q Consensus 588 g~v~iwd~~ 596 (597)
|+|+||++.
T Consensus 366 ~~i~iW~~~ 374 (380)
T 3iz6_a 366 KNLKIWAFS 374 (380)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEecC
Confidence 999999985
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-37 Score=302.14 Aligned_cols=261 Identities=18% Similarity=0.268 Sum_probs=219.8
Q ss_pred cccCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++....... ........+|...|.+++|+| ++.+|++|+.|+.
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~ 88 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKT 88 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECC-CCCEEEEEeCCCE
Confidence 456899999999999965 899999999999999987541100 011223457899999999999 7999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
|+|||+.+++.+..+.+|...|.+++|+| ++.++++++.|+. |++||++ +..+..+.+|...|.++.|+|
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~-------i~vwd~~--~~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKT-------IKVWTIK--GQCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSC-------EEEEETT--SCEEEEECCCSSCEEEEEECC
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCe-------EEEEECC--CCeEEEEeccCCcEEEEEEcc
Confidence 99999999999999999999999999999 8899999996655 9999997 467788889999999999998
Q ss_pred C-------CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 483 N-------NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 483 ~-------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
. ..|++++.|+.|++||+++++....+.+|...|++++|+|+|.+|++|+.||.|++||+.+++.+..+....
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 5 269999999999999999999999999999999999999999999999999999999998876554432211
Q ss_pred C-------------------------------------CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 556 D-------------------------------------ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 556 ~-------------------------------------~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
. ........|...+.+++|+|+|++|++|+.||.|+|||+.+
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0 00001122466789999999999999999999999999864
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.2e-37 Score=303.61 Aligned_cols=251 Identities=17% Similarity=0.265 Sum_probs=215.6
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCc-------------------------------------
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPR------------------------------------- 366 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~------------------------------------- 366 (597)
.+.+|.+.|++++|+|++.+|++|+.||+|+|||..+......
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 3458999999999999999999999999999999765421000
Q ss_pred ----cCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCC-CCceEEeec
Q 042883 367 ----DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCT-EPSMLVSGS 441 (597)
Q Consensus 367 ----~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~ 441 (597)
..........|...|.+++|+| ++..|++|+.||.|++||+.+++.+..+.+|...|.+++|+|. ++.+|++|+
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred ccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 0011123345788899999999 7889999999999999999999999999999999999999884 458999998
Q ss_pred CCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCC--CCceeE
Q 042883 442 DDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGH--TNEKNF 518 (597)
Q Consensus 442 ~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~ 518 (597)
.|+. |++||+++ +..+..+.+|...|.+++|+|+ ..|++++.|++|++||++.++.+..+..+ ...+.+
T Consensus 218 ~Dg~-------v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 218 CDKK-------AMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp TTSC-------EEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred CCCe-------EEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 6555 99999998 7788889999999999999999 88999999999999999988777766543 346889
Q ss_pred EEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 519 VGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 519 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
++|+|+|.+|++|+.|+.|++||+.+++.+..+. +|...|++++|+|+|.+|++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-----------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-----------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-----------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-----------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999888766543 4688999999999999999999999999996
No 10
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-36 Score=293.33 Aligned_cols=252 Identities=15% Similarity=0.242 Sum_probs=208.2
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC-CCCEEEEeeCCCcEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY-TKNLIASSDYDGIVT 404 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-~~~~l~s~~~dg~i~ 404 (597)
.+|.+.|++++|+|+|++|++|+.|++|+||++.... ........+|...|++++|+|+ ++.+|++|+.||.|+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4799999999999999999999999999999987531 1223345578999999999863 478999999999999
Q ss_pred EEeCCCCe--eeeEEeeccceeEEEEeCCCC-CceEEeecCCCcccCCCCeEEEEEccCCCc-ceeeeccCCCceEEEEe
Q 042883 405 IWDVTTSQ--SVMEYEEHEKRAWSVDFSCTE-PSMLVSGSDDCKVGSADHHIHYYDLRNISQ-PLHVFNGHKKAVSYVKF 480 (597)
Q Consensus 405 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~ 480 (597)
|||+.++. .+..+.+|...|.+++|+|+. +.+|++++.|+ .|++||++.... ....+.+|...|.+++|
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~-------~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG-------KVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS-------EEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC-------cEEEEEecCCCceeeeeeecccCccceEee
Confidence 99998774 556677899999999999942 78999998655 499999986422 24567789999999999
Q ss_pred cCC--------------CeEEEeeCCCcEEEEEcCCCc----ceeeeeCCCCceeEEEEeecC---CEEEEEeCCCcEEE
Q 042883 481 LSN--------------NELASASTDSSLRLWDVKENL----PLHTFRGHTNEKNFVGLTVNN---EYIACGSETNEVFV 539 (597)
Q Consensus 481 ~~~--------------~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~v~~s~~g---~~l~~~~~d~~i~i 539 (597)
+|+ .+|++|+.|++|+|||++++. ....+.+|...|.+++|+|++ .+|++++.|+.|+|
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 996 479999999999999998866 566788999999999999985 89999999999999
Q ss_pred EEccCCccccc-cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 540 YHKAISKPAAS-HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 540 wd~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
||+..+..... .... ...|...|.+++|+|+|++|++++.||.|+||++.
T Consensus 234 Wd~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 234 WTQDNEQGPWKKTLLK-------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEESSTTSCCEEEESS-------SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEeCCCCCccceeeee-------cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99976432110 0110 01357789999999999999999999999999975
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.4e-37 Score=303.07 Aligned_cols=246 Identities=15% Similarity=0.200 Sum_probs=206.7
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|...|++++|+|++. +++++.||+|+|||+.++.... .......+|...|++++|+| ++++|++|+.||.|++
T Consensus 91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~---~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL---VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKV 165 (357)
T ss_dssp EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------C---CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE---EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 46888999999999986 5567789999999998762111 11223447889999999999 7899999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee--ccCCCceEEEEecCC
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF--NGHKKAVSYVKFLSN 483 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~ 483 (597)
||+.+++.+..+.+|...|++++|+|++..++++++.|+. |++||+++ ++++..+ ..|...+.+++|+|+
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~-------v~~wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-------ILLWDTRK-PKPATRIDFCASDTIPTSVTWHPE 237 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC-------EEECCTTS-SSCBCBCCCTTCCSCEEEEEECTT
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc-------eEEEECCC-Cceeeeeeeccccccccchhhhhc
Confidence 9999999999999999999999999966678889886555 99999987 5554443 356778999999998
Q ss_pred --CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 484 --NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 484 --~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
.+|++|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++|+.|+.|+|||+.+++.+..+
T Consensus 238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--------- 308 (357)
T 4g56_B 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--------- 308 (357)
T ss_dssp STTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---------
T ss_pred ccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---------
Confidence 568899999999999999999999999999999999999987 58999999999999999988776543
Q ss_pred cCcCCCcceEEEEEcc-CCCeEEEecCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKS-DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~-~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|++|+|+| ++.+|++|+.||+|++|++.
T Consensus 309 ---~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 309 ---SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ---CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ---CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 2688999999998 78999999999999999985
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-36 Score=298.44 Aligned_cols=268 Identities=15% Similarity=0.260 Sum_probs=210.8
Q ss_pred cccCCCCcEEEEEE-----cC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEe
Q 042883 324 DLFHAANIISSIEF-----DR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASS 397 (597)
Q Consensus 324 ~~~~~~~~v~~i~~-----~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~ 397 (597)
.+.+|.+.|++++| ++ ++.+|++|+.|++|++||+.................+|...|++++|+| ++.++++|
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~ 94 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISS 94 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEE
Confidence 45689999999999 76 8999999999999999998764211111111223457889999999999 78999999
Q ss_pred eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-------------------------------
Q 042883 398 DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------- 446 (597)
Q Consensus 398 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------- 446 (597)
+.|+.|++||+.+++.+..+.+|...|++++|+| ++.++++++.|+.+
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI 173 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence 9999999999999999999999999999999999 88899999877754
Q ss_pred ----------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC-Ccceee
Q 042883 447 ----------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE-NLPLHT 508 (597)
Q Consensus 447 ----------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~-~~~~~~ 508 (597)
++.|+.|++||.. ......+.+|...|.+++|+|+ .+|++|+.||.|++||++. ......
T Consensus 174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~ 251 (343)
T 2xzm_R 174 MKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251 (343)
T ss_dssp CCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE
T ss_pred cccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee
Confidence 2335666667633 3455667789999999999999 7899999999999999954 444444
Q ss_pred eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC--CCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD--ADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 509 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
+ .+...|.+++|+|++.+++++ .|+.|++||+.+++......+... .......+|...|++++|+|+|.+|++|+.
T Consensus 252 ~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 329 (343)
T 2xzm_R 252 F-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329 (343)
T ss_dssp E-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred e-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence 4 345679999999999887755 578899999988765542222110 000111246788999999999999999999
Q ss_pred cccEEEEEecC
Q 042883 587 KGAIKVLVLAA 597 (597)
Q Consensus 587 dg~v~iwd~~~ 597 (597)
||.|++|++++
T Consensus 330 Dg~v~~w~~~~ 340 (343)
T 2xzm_R 330 DGVIRTFSFET 340 (343)
T ss_dssp TSEEEEEEEEE
T ss_pred CceEEEEEEEc
Confidence 99999999863
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.1e-36 Score=295.99 Aligned_cols=244 Identities=18% Similarity=0.286 Sum_probs=214.2
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
..|...|.+++|+|++.+|++|+.|+.|++|++.+..... .......+|...|.++.|++ + ..+++++.|+.|++
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~ 168 (340)
T 1got_B 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV---RVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCAL 168 (340)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC---EEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEE
T ss_pred ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc---eeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEE
Confidence 4688999999999999999999999999999987651110 11223457889999999997 3 45899999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-C
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~ 484 (597)
||+.++..+..+.+|...|.+++|+| ++.++++|+.|+. |++||+++ +..+..+.+|...|.+++|+|+ .
T Consensus 169 wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~-------v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~ 239 (340)
T 1got_B 169 WDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDAS-------AKLWDVRE-GMCRQTFTGHESDINAICFFPNGN 239 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSC-------EEEEETTT-CSEEEEECCCSSCEEEEEECTTSS
T ss_pred EECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCc-------EEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCC
Confidence 99999999999999999999999999 8889999986555 99999997 7788889999999999999999 8
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeC--CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRG--HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
.|++|+.||+|++||+++++.+..+.. +...|.+++|+|+|.+|++|+.||.|++||+.+++.+..+.
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~---------- 309 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA---------- 309 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee----------
Confidence 899999999999999999887777653 33478999999999999999999999999999888776654
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+|...|++++|+|+|.+|++|+.||.|+|||
T Consensus 310 -~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 -GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 4688999999999999999999999999997
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=298.00 Aligned_cols=252 Identities=17% Similarity=0.236 Sum_probs=204.7
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCc----cCCccCCCCceEecCCCceeEEEEecCCCCEEEEee
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVV----NEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD 398 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~ 398 (597)
.....|...|.+++|+|||++|++++ |+++++||..... ..............+...|.+++|+| + +.|++|+
T Consensus 24 ~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d-~~l~~~s 100 (344)
T 4gqb_B 24 NAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-E-RGILVAS 100 (344)
T ss_dssp CSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-T-TEEEEEE
T ss_pred CCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-C-CeEEEEE
Confidence 34456788899999999999998887 7788888743210 00001112233445677899999998 3 5788999
Q ss_pred CCCcEEEEeCCCCeeeeE----EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc
Q 042883 399 YDGIVTIWDVTTSQSVME----YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA 474 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 474 (597)
.||.|+|||+.+++.... ..+|.+.|++++|+| ++.+|++|+.|+. |++||+.+ ++.+..+.+|.+.
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~-------i~iwd~~~-~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDIC-------IKVWDLAQ-QVVLSSYRAHAAQ 171 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC-------EEEEETTT-TEEEEEECCCSSC
T ss_pred CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCe-------EEEEECCC-CcEEEEEcCcCCc
Confidence 999999999998865443 347999999999999 8999999996655 99999998 7889999999999
Q ss_pred eEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeee--CCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCcccc
Q 042883 475 VSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFR--GHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 475 v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
|.+++|+|+ ..|++++.|++|++||+++++.+..+. .+...+.+++|+|+ +.+|++|+.||.|+|||+++++.+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 999999998 468999999999999999999888774 45567899999995 6788999999999999999998887
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEecC
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~~ 597 (597)
.+. +|...|++++|+|++ .+|++|+.||+|+|||+.+
T Consensus 252 ~~~-----------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 252 SSA-----------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp EEE-----------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred EEc-----------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 765 368899999999998 5799999999999999753
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-36 Score=294.14 Aligned_cols=259 Identities=20% Similarity=0.274 Sum_probs=210.2
Q ss_pred ccCCCC-cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAAN-IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~-~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|.+ .|++++|+|+|++|++|+.|++|+||++.+.... .......+|...|.+++|+| ++++|++|+.|+.|
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~----~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI----CKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATT 85 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE----EEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce----eeeeeccccCCcEEEEEECC-CCCEEEEEECCCcE
Confidence 346776 9999999999999999999999999998765100 01112246889999999999 78999999999999
Q ss_pred EEEeCCCC--eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC--cceeeeccCCCceEEEE
Q 042883 404 TIWDVTTS--QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS--QPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 404 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~v~ 479 (597)
+|||+..+ ..+..+.+|...|.+++|+| ++.+|++++.|+. |++||++... ..+..+.+|...|.+++
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~-------v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKS-------VWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSC-------EEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCe-------EEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 99998776 45778889999999999999 8899999996655 9999998632 23566788999999999
Q ss_pred ecCC-CeEEEeeCCCcEEEEEcCCCc--ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCC
Q 042883 480 FLSN-NELASASTDSSLRLWDVKENL--PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 556 (597)
|+|+ .+|++++.|+.|++||.+.+. ....+.+|...|++++|+|+|++|++|+.|+.|+|||...............
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 9999 789999999999999998775 4567889999999999999999999999999999999754322111110000
Q ss_pred CC-----CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 557 AD-----HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 557 ~~-----~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.. ......|...|++++|+|++..|++++.|+.|++|+++
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 00 00012368899999999999999999999999999975
No 16
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-36 Score=295.23 Aligned_cols=250 Identities=18% Similarity=0.228 Sum_probs=203.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC-CCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY-TKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-~~~~l~s~~~dg~i 403 (597)
+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.. .......+|...|++++|+|. ++++|++|+.|+.|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 347999999999999999999999999999999976510 112234578999999999863 47899999999999
Q ss_pred EEEeCCCCe--eeeEEeeccceeEEEEeCCCC-CceEEeecCCCcccCCCCeEEEEEccCCCc--ceeeeccCCCceEEE
Q 042883 404 TIWDVTTSQ--SVMEYEEHEKRAWSVDFSCTE-PSMLVSGSDDCKVGSADHHIHYYDLRNISQ--PLHVFNGHKKAVSYV 478 (597)
Q Consensus 404 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~v 478 (597)
++||+.++. ....+.+|...|++++|+|++ +.+|++++.|+. |++||++.... ....+.+|...|.++
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~-------i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA-------ISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC-------EEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC-------EEEEecCCCCCcceeeeeccccCCcceE
Confidence 999998873 566778899999999999942 789999986655 99999986322 235567899999999
Q ss_pred EecCC------------------CeEEEeeCCCcEEEEEcCCC---cceeeeeCCCCceeEEEEeecC----CEEEEEeC
Q 042883 479 KFLSN------------------NELASASTDSSLRLWDVKEN---LPLHTFRGHTNEKNFVGLTVNN----EYIACGSE 533 (597)
Q Consensus 479 ~~~~~------------------~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~v~~s~~g----~~l~~~~~ 533 (597)
+|+|+ .+|++|+.|++|++||++.+ +.+..+.+|...|.+++|+|++ .+|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 99986 47999999999999999754 4667788999999999999986 79999999
Q ss_pred CCcEEEEEccCCcc---ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 534 TNEVFVYHKAISKP---AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 534 d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
||.|+||++.+... ..... ..|...|++++|+|++.+|++++.||.|+||++.
T Consensus 237 D~~v~iw~~~~~~~~~~~~~~~----------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTWSPKLL----------HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCCCBCCEE----------EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEccCccccchhhhhh----------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999876321 11110 1357889999999999999999999999999974
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.4e-35 Score=288.05 Aligned_cols=265 Identities=18% Similarity=0.255 Sum_probs=216.1
Q ss_pred cccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 324 DLFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.+.||.+.|++|+|+|+ +++|+||+.||+|+|||+....... ........+|...|.+++|+| ++.+|++|+.|+.
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--GIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGT 109 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--ceeeEEEeCCCCCEEEEEECC-CCCEEEEEccccc
Confidence 35689999999999997 6899999999999999998651111 011123456889999999999 7999999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------------------------------
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------------ 446 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------------ 446 (597)
|++|+............+...+..+.+++ .+.++++++.|+.+
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 99999988877777767777777777777 66777777777665
Q ss_pred --cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEee
Q 042883 447 --GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTV 523 (597)
Q Consensus 447 --~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~ 523 (597)
++.|+.|++||+++ ...+..+.+|.+.|.+++|+|+ .+|++|+.||.|++||+++++.+..+..+ ..+..+.|+|
T Consensus 189 ~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~ 266 (340)
T 4aow_A 189 VSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSP 266 (340)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred EEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCC
Confidence 56778899999997 7788888999999999999999 78999999999999999999998888754 5789999999
Q ss_pred cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 524 NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 524 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
++.++ +++.|+.|++||+.++..+..+.... .......|...|++++|+|+|++|++|+.||.|+|||+++
T Consensus 267 ~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 267 NRYWL-CAATGPSIKIWDLEGKIIVDELKQEV--ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp SSSEE-EEEETTEEEEEETTTTEEEEEECCC---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCcee-eccCCCEEEEEECCCCeEEEeccccc--eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 88655 55679999999998877665544321 1112235788999999999999999999999999999975
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=289.84 Aligned_cols=250 Identities=18% Similarity=0.268 Sum_probs=194.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+|.+.|++++|+|++.+|++|+.|++|+||++.................+|...|.+++|+| ++.+|++|+.|+.|++|
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iw 134 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIW 134 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEE
Confidence 39999999999999999999999999999998643111001111223457889999999999 78999999999999999
Q ss_pred eCCCC----eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC-cceeeeccCCCceEEEEec
Q 042883 407 DVTTS----QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS-QPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 407 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~ 481 (597)
|+... +.+..+.+|...|.+++|+| ++.+|++++.|+. |++||..... ..+..+.+|.+.|.+++|+
T Consensus 135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~-------i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~ 206 (330)
T 2hes_X 135 ETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT-------VRIWKDYDDDWECVAVLNGHEGTVWSSDFD 206 (330)
T ss_dssp ECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC-------EEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred eccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe-------EEEEECCCCCeeEEEEccCCCCcEEEEEec
Confidence 99432 46677889999999999999 8899999996655 9999987621 5678889999999999999
Q ss_pred CC--C-eEEEeeCCCcEEEEEcCCC--------cceeeeeC-CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc--
Q 042883 482 SN--N-ELASASTDSSLRLWDVKEN--------LPLHTFRG-HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP-- 547 (597)
Q Consensus 482 ~~--~-~l~s~~~d~~v~iwd~~~~--------~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~-- 547 (597)
|+ + .|++++.|++|++||++.+ .....+.+ |...|++++|++++ +|++++.||.|+|||..++..
T Consensus 207 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~ 285 (330)
T 2hes_X 207 KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKV 285 (330)
T ss_dssp CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEE
Confidence 98 3 6899999999999999764 33444544 88999999999665 789999999999999877642
Q ss_pred ccccccCCCCCCCcCcCCCc-ceEEEEEcc--CCCeEEEecCcccEEEEEec
Q 042883 548 AASHRFGSDADHVDDDMGSY-FISAVCWKS--DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~-~i~~v~~~~--~~~~l~s~~~dg~v~iwd~~ 596 (597)
...... .|.. .|++++|+| ++.+|++|+.||+|+|||++
T Consensus 286 ~~~~~~----------~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 286 FAKRAL----------CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEESC----------TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred Eecccc----------ccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 211111 2454 899999999 78999999999999999986
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-35 Score=286.59 Aligned_cols=253 Identities=18% Similarity=0.276 Sum_probs=199.8
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceE-ec-CCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVE-MP-TRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~~-~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
+.+|.+.|++++|+|+ +|++|+.|++|++|++..+.. ...... .. |...|.+++|+| ++.+|++|+.|+.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-----~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~ 81 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-----TLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDST 81 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----EEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSC
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----EEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCc
Confidence 3479999999999987 999999999999999976410 001111 23 888999999999 7899999999999
Q ss_pred EEEEeCCC-------CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC---cceeeeccCC
Q 042883 403 VTIWDVTT-------SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS---QPLHVFNGHK 472 (597)
Q Consensus 403 i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~ 472 (597)
|+|||+.. ...+..+.+|...|++++|+| ++.+|++++.|+. |++||++..+ ..+..+.+|.
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~-------v~iwd~~~~~~~~~~~~~~~~h~ 153 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKS-------VWIWETDESGEEYECISVLQEHS 153 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSC-------EEEEECCTTCCCCEEEEEECCCS
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCE-------EEEEeccCCCCCeEEEEEeccCC
Confidence 99999843 356677889999999999999 8899999996655 9999995422 3466788999
Q ss_pred CceEEEEecCC-CeEEEeeCCCcEEEEEcCCC--cceeeeeCCCCceeEEEEeec--CCEEEEEeCCCcEEEEEccCCcc
Q 042883 473 KAVSYVKFLSN-NELASASTDSSLRLWDVKEN--LPLHTFRGHTNEKNFVGLTVN--NEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 473 ~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~v~~s~~--g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
..|.+++|+|+ .+|++++.|++|++||..++ +.+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..+..
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99999999999 78999999999999999876 678889999999999999998 77999999999999999876532
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
........ .......|...|++++|++++ +|++++.||.|+|||+.
T Consensus 234 ~~~~~~~~--~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 234 DDQQEWVC--EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp TSCEEEEE--EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred cccceeEE--eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 10000000 000001268899999999765 89999999999999974
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-35 Score=282.86 Aligned_cols=245 Identities=18% Similarity=0.290 Sum_probs=211.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|..+|.+++|+|++++|++|+.|++|++||+.++ .......+|...|++++|+| ++.+|++|+.||.|+
T Consensus 51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVK 122 (304)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEE
T ss_pred eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC-------cEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEE
Confidence 3468899999999999999999999999999999876 33344557899999999999 789999999999999
Q ss_pred EEeCCCC-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC-
Q 042883 405 IWDVTTS-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS- 482 (597)
Q Consensus 405 iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~- 482 (597)
+||+.++ .....+.+|...|.+++|+|.++.+|++|+.|+. |++||++..........+|...+..+.|+|
T Consensus 123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-------v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (304)
T 2ynn_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-------VKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195 (304)
T ss_dssp EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE-------EEEEETTCSSCSEEEECCCTTCEEEEEECCS
T ss_pred EEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-------EEEEECCCCCccceeccCCcCcEEEEEEEEc
Confidence 9999877 5567788999999999999977889999986554 999999874434444456778899999987
Q ss_pred -C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 483 -N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 483 -~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
+ .+|++++.|++|++||+++++.+..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++....+..
T Consensus 196 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~------- 268 (304)
T 2ynn_A 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV------- 268 (304)
T ss_dssp TTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-------
T ss_pred CCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC-------
Confidence 4 5899999999999999999999999999999999999999999999999999999999999988877653
Q ss_pred cCcCCCcceEEEEEccCCC--eEEEecCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSP--TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~--~l~s~~~dg~v~iwd~~ 596 (597)
|...+++++|+|++. ++++|+.|| +.+|++.
T Consensus 269 ----~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 269 ----GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp ----SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred ----CCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 467899999999875 477776665 6678764
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.3e-35 Score=292.17 Aligned_cols=241 Identities=22% Similarity=0.314 Sum_probs=207.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
+...|++++|+|+|++|++|+.|+.|+|||+.++ .......+|...|++++|+| ++..|++|+.|+.|++||
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEE
Confidence 3446999999999999999999999999999876 22334457889999999999 789999999999999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-------ccCCCceEEEEe
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-------NGHKKAVSYVKF 480 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~v~~v~~ 480 (597)
+.+++....+. +...+.+++|+|.++.++++++.|+. |++||+++ +..+..+ .+|...|.+++|
T Consensus 194 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~-------v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 194 LRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRA-------VRVWDSET-GFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSC-------EEEEETTT-CCEEEEEC------CCCSSCEEEEEE
T ss_pred CCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCc-------EEEEECCC-CcEEEeecccccCCCCCCCCEEEEEE
Confidence 99998887775 56779999999978899999986655 99999987 5555554 578899999999
Q ss_pred cCC-CeEEEeeCCCcEEEEEcCCC------------cceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 481 LSN-NELASASTDSSLRLWDVKEN------------LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 481 ~~~-~~l~s~~~d~~v~iwd~~~~------------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
+|+ ..|++|+.|+.|++||+++. .....+.+|...|.+++|+|++.+|++|+.||.|++||+.++++
T Consensus 265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 999 78999999999999999753 34567788999999999999999999999999999999999988
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEEcc------CCCeEEEecCcccEEEEEec
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCWKS------DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~------~~~~l~s~~~dg~v~iwd~~ 596 (597)
+..+. +|...|.+++|++ ++.+|++|+.||+|+||++.
T Consensus 345 ~~~l~-----------~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 345 LLMLQ-----------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEE-----------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEC-----------CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 76654 4688999999886 67899999999999999985
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-34 Score=281.19 Aligned_cols=248 Identities=21% Similarity=0.340 Sum_probs=212.3
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|++++|+|++++|++|+.||.|++|++.++ .......+|...|.+++|+| ++++|++|+.||.|+
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLK 90 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------ccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEE
Confidence 4589999999999999999999999999999998766 22234456888999999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+||+.+++.+..+.+|...|.+++|+| ++.++++++.|+. |++||+++ +..+..+..|...|.+++|+|+
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~-------i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES-------VRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDG 161 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSC-------EEEEETTT-CCEEEEECCCSSCEEEEEECTTS
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCc-------EEEEECCC-CEEEEEecCCCCcEEEEEEcCCC
Confidence 999999999999999999999999999 8899999986555 99999997 6778888899999999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
..|++++.||.|++||+++++.+..+. .+...+..++|+|+|++|++++.||.|++||+.+++.+..+....
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------- 234 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK------- 234 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC-------
T ss_pred CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC-------
Confidence 789999999999999999988877764 456688999999999999999999999999999988776554211
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.....+......+++.+|++|+.||.|++||+.+
T Consensus 235 -~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 235 -NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp -CSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred -CceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 0011222233346788999999999999999853
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-35 Score=291.72 Aligned_cols=251 Identities=19% Similarity=0.295 Sum_probs=200.0
Q ss_pred cccccCCCCcEEEEEEcCCCCEEEEeeC------CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEE
Q 042883 322 HGDLFHAANIISSIEFDRDDELFASAGV------SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIA 395 (597)
Q Consensus 322 ~~~~~~~~~~v~~i~~~~~~~~l~t~~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~ 395 (597)
......|...|++++|+|||++|++|+. |+.|++|+..++.... ........|...|++++|+| ++ .++
T Consensus 35 ~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---~~~~~~~~~~~~V~~~~~s~-d~-~~l 109 (357)
T 4g56_B 35 VTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---SLCTAGVQTEAGVTDVAWVS-EK-GIL 109 (357)
T ss_dssp -----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---GGCSEEEECSSCEEEEEEET-TT-EEE
T ss_pred CCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---eEecccCCCCCCEEEEEEcC-CC-CEE
Confidence 3344579999999999999999999997 7789999876651111 12234456888999999999 44 566
Q ss_pred EeeCCCcEEEEeCCCCeeee----EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC
Q 042883 396 SSDYDGIVTIWDVTTSQSVM----EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH 471 (597)
Q Consensus 396 s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 471 (597)
+++.||.|+|||+.+++... ...+|...|++++|+| ++.+|++++.|+. |++||+++ +..+..+.+|
T Consensus 110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~-------v~iwd~~~-~~~~~~~~~h 180 (357)
T 4g56_B 110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFS-------VKVWDLSQ-KAVLKSYNAH 180 (357)
T ss_dssp EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSC-------EEEEETTT-TEEEEEECCC
T ss_pred EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCe-------EEEEECCC-CcEEEEEcCC
Confidence 77889999999998876432 3347899999999999 8899999986555 99999997 7888899999
Q ss_pred CCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeee--CCCCceeEEEEeec-CCEEEEEeCCCcEEEEEccCCc
Q 042883 472 KKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFR--GHTNEKNFVGLTVN-NEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 472 ~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
...|.+++|+|+ ..+++++.||.|++||+++++.+..+. .+...+.+++|+|+ +.+|++|+.|+.|++||+.+++
T Consensus 181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 999999999998 479999999999999999988776654 46677999999997 5689999999999999999988
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEecC
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~~ 597 (597)
.+..+. .|...|++++|+|++ ++|++|+.||+|+|||+++
T Consensus 261 ~~~~~~-----------~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 261 SAQTSA-----------VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp GCEEEC-----------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred EeEEEe-----------ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 877664 358899999999987 5789999999999999753
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=288.05 Aligned_cols=256 Identities=16% Similarity=0.240 Sum_probs=206.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|...|++++|+|++++|++|+.|++|+||++.... ........+|...|.+++|+| ++++|++|+.|+.|++
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~i 131 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWV 131 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC------EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-----eEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEE
Confidence 4799999999999999999999999999999987651 111233456889999999999 7899999999999999
Q ss_pred EeCCCC---eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC-cceeeeccCCCceEEEEec
Q 042883 406 WDVTTS---QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS-QPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 406 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~ 481 (597)
||+.++ ..+..+.+|...|.+++|+| ++.+|++++.|+. |++||.+... .....+.+|...|.+++|+
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~-------i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s 203 (345)
T 3fm0_A 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDT-------VKLYREEEDDWVCCATLEGHESTVWSLAFD 203 (345)
T ss_dssp EEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSC-------EEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred EECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCc-------EEEEEecCCCEEEEEEecCCCCceEEEEEC
Confidence 999775 34567788999999999999 8899999986655 9999998622 2456788999999999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcCCC---------------cceeeeeC-CCCceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 482 SN-NELASASTDSSLRLWDVKEN---------------LPLHTFRG-HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~~---------------~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
|+ .+|++++.|++|+|||.... +.+..+.+ |...|++++|+|++..|++++.|+.|++|+...
T Consensus 204 p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 99 78999999999999997432 12334444 788999999999999999999999999999876
Q ss_pred CccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEecC
Q 042883 545 SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~~~ 597 (597)
+.......+. .......+|...|++|+|+|++. +|++|+.||+|+||++.+
T Consensus 284 ~~~~~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 284 NSDPQQPTFS--LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp TSCTTSCCEE--EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCCcceeeEE--EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 5321110000 00001124788999999999984 899999999999999863
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.7e-35 Score=311.55 Aligned_cols=256 Identities=18% Similarity=0.226 Sum_probs=213.3
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC----
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---- 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---- 400 (597)
+.+|...|++++|+|+|++||+|+.||+|+|||+.++. .........|...|.+++|+| ++..|++++.+
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~-----~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-----HILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERF 128 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-----CCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCS
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc-----ceeeEeecccCCceEEEEECC-CCCEEEEEECCCCce
Confidence 45799999999999999999999999999999986541 011123456889999999999 68888887754
Q ss_pred CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEe
Q 042883 401 GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKF 480 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~ 480 (597)
+.|++|| .+.....+.+|...|++++|+|++...|++++.|+. |++||... .+.+..+.+|...|.+++|
T Consensus 129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~-------v~lwd~~~-~~~~~~l~~H~~~V~~v~f 198 (611)
T 1nr0_A 129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT-------VAIFEGPP-FKFKSTFGEHTKFVHSVRY 198 (611)
T ss_dssp EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC-------EEEEETTT-BEEEEEECCCSSCEEEEEE
T ss_pred eEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCe-------EEEEECCC-CeEeeeeccccCceEEEEE
Confidence 4677787 466777888999999999999944457999986655 99999876 6778889999999999999
Q ss_pred cCC-CeEEEeeCCCcEEEEEcCCCcceeeee-------CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 481 LSN-NELASASTDSSLRLWDVKENLPLHTFR-------GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 481 ~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
+|+ .+|++++.|++|++||+.+++.+..+. +|.+.|.+++|+|+|.+|++++.|+.|++||+.+++.+..+.
T Consensus 199 spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 999 789999999999999999998888874 799999999999999999999999999999999887665543
Q ss_pred cCCCCC--------------------------------CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 553 FGSDAD--------------------------------HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 553 ~~~~~~--------------------------------~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+.... .....+|...|++++|+|+|++|++++.||+|++||+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 221000 00113578999999999999999999999999999975
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-34 Score=288.65 Aligned_cols=259 Identities=18% Similarity=0.306 Sum_probs=202.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCC------C-----ceEecCCCceeEEEEecCCCCEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHY------P-----MVEMPTRSKLSCLSWNKYTKNLI 394 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~------~-----~~~~~~~~~i~~v~~~~~~~~~l 394 (597)
++|.+.|++++|+|+|++|++|+ ++.++||++.++......... + .....+...|.+++|+| ++.+|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEE
Confidence 46999999999999999999986 789999999876211000000 0 00011233599999999 78999
Q ss_pred EEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc
Q 042883 395 ASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA 474 (597)
Q Consensus 395 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 474 (597)
++|+.||.|+|||+.+++.+..+.+|...|++++|+| ++.++++++.|+. |++||+++ +.....+. +...
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~-------v~iwd~~~-~~~~~~~~-~~~~ 208 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRT-------VRIWDLRT-GQCSLTLS-IEDG 208 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSE-------EEEEETTT-TEEEEEEE-CSSC
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCc-------EEEEECCC-CeeEEEEE-cCCC
Confidence 9999999999999999999999999999999999999 8889999986554 99999997 55555554 5678
Q ss_pred eEEEEecC-C-CeEEEeeCCCcEEEEEcCCCcceeee-------eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC
Q 042883 475 VSYVKFLS-N-NELASASTDSSLRLWDVKENLPLHTF-------RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 475 v~~v~~~~-~-~~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 545 (597)
+.+++|+| + .+|++|+.||.|++||++++..+..+ .+|...|++++|+|+|.+|++|+.||.|++||+.+.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999 5 78999999999999999998887776 578899999999999999999999999999999865
Q ss_pred ccccccccCCC-CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 546 KPAASHRFGSD-ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 546 ~~~~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
........... .......+|...|.+++|+|++.+|++|+.||.|++||+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred CCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 43221111000 0000112468899999999999999999999999999975
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=281.53 Aligned_cols=252 Identities=16% Similarity=0.205 Sum_probs=221.6
Q ss_pred ccccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 323 GDLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ ........|...|++++|+| ++++|++++.||.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------ERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYS 97 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------hhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCe
Confidence 345689999999999999999999999999999999876 22334446889999999999 7899999999999
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCC-----Ccc-------------------------------
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD-----CKV------------------------------- 446 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~~------------------------------- 446 (597)
|++||+.+++.+..+. +...|.+++|+| ++.++++++.+ +.+
T Consensus 98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 9999999998888886 788899999998 77777777665 222
Q ss_pred -----------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceee
Q 042883 447 -----------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHT 508 (597)
Q Consensus 447 -----------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~ 508 (597)
++.||.|++||+++....+..+..|...|.+++|+|+ .+|++++.||.|++||+++++.+..
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence 5678899999998756778888889999999999999 7899999999999999999998888
Q ss_pred eeCCCCceeEEEEeecCCEEEEEeCCC--------------cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEE
Q 042883 509 FRGHTNEKNFVGLTVNNEYIACGSETN--------------EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCW 574 (597)
Q Consensus 509 ~~~~~~~v~~v~~s~~g~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~ 574 (597)
+. +...+..++|+|++.++++++.++ .+++||..+++.+..+. .|...|++++|
T Consensus 256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~~v~~~~~ 323 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-----------GHFGPLNTVAI 323 (369)
T ss_dssp EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-----------CCSSCEEEEEE
T ss_pred ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-----------cccCcEEEEEE
Confidence 87 678899999999999999999888 89999999998877664 35889999999
Q ss_pred ccCCCeEEEecCcccEEEEEec
Q 042883 575 KSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 575 ~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|++++|++++.||.|+||+++
T Consensus 324 s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 324 SPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEEEC
T ss_pred CCCCCEEEEEcCCCeEEEEECc
Confidence 9999999999999999999985
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.1e-34 Score=275.92 Aligned_cols=244 Identities=25% Similarity=0.390 Sum_probs=211.4
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|...|.+++|+|++++|++|+.||.|++||+.++ .......+|...|.+++|+| ++++|++|+.||.|+
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVR 132 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEE
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEE
Confidence 3479999999999999999999999999999999876 22334456888999999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~ 483 (597)
+||+.+++.+..+..|..+|.+++|+| ++.++++++.|+. |++||+++ +..+..+ ..+...+..++|+|+
T Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-------i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 133 IWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGL-------CRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN 203 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSC-------EEEEETTT-CCEEEEECCSSCCCEEEEEECTT
T ss_pred EEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCc-------EEEEECCC-CceeeEEeccCCCceEEEEECCC
Confidence 999999999999999999999999999 8889999986555 99999997 5555554 456678999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeE--EEEe-ecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNF--VGLT-VNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~--v~~s-~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
.+|++++.||.|++||+++++.+..+.+|...+.. ..++ +++.+|++|+.||.|++||+.+++.+..+.
T Consensus 204 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------- 276 (312)
T 4ery_A 204 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ------- 276 (312)
T ss_dssp SSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-------
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-------
Confidence 78999999999999999999999999888765433 3344 578899999999999999999988776664
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEec--CcccEEEEEec
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTAN--RKGAIKVLVLA 596 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~--~dg~v~iwd~~ 596 (597)
+|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 277 ----~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 ----GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ----CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ----ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 3688999999999999999986 69999999975
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=282.74 Aligned_cols=253 Identities=14% Similarity=0.239 Sum_probs=210.7
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC-CCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY-TKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-~~~~l~s~~~dg~i 403 (597)
+.+|.+.|++++|+|++++|++|+.||.|+||++.... ........+|...|++++|+++ ++.+|++|+.||.|
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 34799999999999999999999999999999997431 1122234468899999999873 28999999999999
Q ss_pred EEEeCCCCe--eeeEEeeccceeEEEEeCCCC--CceEEeecCCCcccCCCCeEEEEEccCCC-cceeeeccCCCceEEE
Q 042883 404 TIWDVTTSQ--SVMEYEEHEKRAWSVDFSCTE--PSMLVSGSDDCKVGSADHHIHYYDLRNIS-QPLHVFNGHKKAVSYV 478 (597)
Q Consensus 404 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~v 478 (597)
++||+.++. .+..+..|...|.+++|+| + +.++++++.|+ .|++||++... .....+.+|...|.++
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~-------~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDG-------KVSVVEFKENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTS-------EEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCC-------cEEEEecCCCCceeeEEecCCCCceEEE
Confidence 999999887 6777888999999999999 5 88999988655 49999998742 3444567899999999
Q ss_pred EecC-------------C-CeEEEeeCCCcEEEEEcCCCc----ceeeeeCCCCceeEEEEeec---CCEEEEEeCCCcE
Q 042883 479 KFLS-------------N-NELASASTDSSLRLWDVKENL----PLHTFRGHTNEKNFVGLTVN---NEYIACGSETNEV 537 (597)
Q Consensus 479 ~~~~-------------~-~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~v~~s~~---g~~l~~~~~d~~i 537 (597)
+|+| + ..|++++.||.|++||++++. .+..+.+|...|.+++|+|+ +.+|++++.||.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 9999 5 789999999999999998765 44567789999999999999 8999999999999
Q ss_pred EEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 538 FVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 538 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++||+.++......... ....|...|++++|+|+|.+|++++.||.|+||+++
T Consensus 234 ~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLL------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEEESSTTSCCEEEES------SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EEEeCCCCCccceeeee------ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99999887532221111 012357889999999999999999999999999986
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-34 Score=292.84 Aligned_cols=256 Identities=16% Similarity=0.127 Sum_probs=200.8
Q ss_pred cCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 326 FHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 326 ~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
.+|...|++++|+| ++.+||+|+.||.|+|||+.+.. ........+|...|++|+|+|.++++|++|+.||+|+
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 35888999999999 56799999999999999998761 1111223468999999999997789999999999999
Q ss_pred EEeCCCCeeeeEEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 405 IWDVTTSQSVMEYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 405 iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
+||++++........ +...+.+++|+| ++.+|++|+.|+. |++||++ ++.+..+.+|...|.+++|+|
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~-------i~~wd~~--~~~~~~~~~h~~~v~~v~~~p 260 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGN-------VILLNMD--GKELWNLRMHKKKVTHVALNP 260 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSB-------EEEEESS--SCBCCCSBCCSSCEEEEEECT
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCc-------EeeeccC--cceeEEEecccceEEeeeecC
Confidence 999987654333332 344678999999 8899999986555 9999997 466778889999999999999
Q ss_pred C--CeEEEeeCCCcEEEEEcCCCcceee---eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC---
Q 042883 483 N--NELASASTDSSLRLWDVKENLPLHT---FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG--- 554 (597)
Q Consensus 483 ~--~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--- 554 (597)
+ ..|++++.|+.|+|||+++.+.... ..+|...|++++|+|+|.+|++++.||.|+|||+.++.....+...
T Consensus 261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 340 (435)
T 4e54_B 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340 (435)
T ss_dssp TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC
T ss_pred CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc
Confidence 8 4688999999999999998665443 3578999999999999999999999999999999876533211000
Q ss_pred ----------------------CC------------CCC-------------CcCcCCCcceEEE-EEccCCCeEEEecC
Q 042883 555 ----------------------SD------------ADH-------------VDDDMGSYFISAV-CWKSDSPTMLTANR 586 (597)
Q Consensus 555 ----------------------~~------------~~~-------------~~~~~h~~~i~~v-~~~~~~~~l~s~~~ 586 (597)
.. ... ....+|...|.++ +|+|+|.+|++|+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~- 419 (435)
T 4e54_B 341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM- 419 (435)
T ss_dssp CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-
T ss_pred ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-
Confidence 00 000 0012467778887 6999999999876
Q ss_pred cccEEEEEecC
Q 042883 587 KGAIKVLVLAA 597 (597)
Q Consensus 587 dg~v~iwd~~~ 597 (597)
|+.|+|||+.+
T Consensus 420 d~~i~iW~~~~ 430 (435)
T 4e54_B 420 GYHILIWSQQE 430 (435)
T ss_dssp SSEEEECCCC-
T ss_pred CCcEEEEECCc
Confidence 78999999863
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-33 Score=299.35 Aligned_cols=244 Identities=23% Similarity=0.331 Sum_probs=217.5
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|...|++++|+|++.+|++++.|+.|++|+.... .......|...|.+++|+| ++.+|++|+.||.|+
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVK 369 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEE
Confidence 3579999999999999999999999999999998654 2334456788999999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc----------------------------------cCCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV----------------------------------GSAD 450 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~----------------------------------~~~d 450 (597)
+||. +++.+..+.+|...|.+++|+| ++.++++++.|+.+ ++.|
T Consensus 370 ~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 370 LWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 9995 5677888889999999999999 88899999988876 6788
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEE
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIA 529 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 529 (597)
+.|++||.. ++.+..+.+|...|.+++|+|+ .+|++++.|+.|++||. +++.+..+.+|...|++++|+|+|++|+
T Consensus 448 ~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 448 KTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp SEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred CEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence 999999975 5678888899999999999999 78999999999999995 6888999999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 530 CGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+++.||.|++||. +++.+..+. +|...|++++|+|||++|++++.||+|++||
T Consensus 525 s~~~dg~v~lwd~-~~~~~~~~~-----------~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASDDKTVKLWNR-NGQLLQTLT-----------GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEETTSEEEEECT-TSCEEEEEE-----------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECcCEEEEEeC-CCCEEEEEc-----------CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999996 566555543 4789999999999999999999999999997
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-33 Score=305.10 Aligned_cols=267 Identities=18% Similarity=0.296 Sum_probs=220.8
Q ss_pred ccccCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 323 GDLFHAANIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 323 ~~~~~~~~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+.+.+|.+.|++++|+|++ ++|++|+.|++|++|++....... ........+|...|.+++|+| ++.+|++|+.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--GVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--CEEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--ccccceecCCCCcEEEEEECC-CCCEEEEEeCCC
Confidence 3456899999999999864 799999999999999997641110 011234567899999999999 789999999999
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-----------------------------------
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV----------------------------------- 446 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~----------------------------------- 446 (597)
.|+|||+.++..+..+.+|...|.+++|+| ++.+|++++.|+.+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 999999999999999999999999999999 88999999999876
Q ss_pred -----cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEE
Q 042883 447 -----GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVG 520 (597)
Q Consensus 447 -----~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~ 520 (597)
++.|+.|++||++. ......+.+|.+.|++++|+|+ .+|++|+.||.|+|||+++++.+..+.. ...+.+++
T Consensus 532 ~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~ 609 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALC 609 (694)
T ss_dssp CEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEE
T ss_pred ceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEE
Confidence 56789999999987 6778888999999999999999 7899999999999999999998888764 46799999
Q ss_pred EeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCC--------CCcCcCCCcceEEEEEccCCCeEEEecCcccEEE
Q 042883 521 LTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDAD--------HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKV 592 (597)
Q Consensus 521 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~i 592 (597)
|+|++.++++++ ++.|+|||+.++..+..+....... ......+...+++++|+|+|++|++|+.||+|+|
T Consensus 610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 999998887765 5669999999988776554321100 0001112345889999999999999999999999
Q ss_pred EEec
Q 042883 593 LVLA 596 (597)
Q Consensus 593 wd~~ 596 (597)
||+.
T Consensus 689 W~i~ 692 (694)
T 3dm0_A 689 WGIG 692 (694)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 9985
No 33
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.8e-33 Score=275.89 Aligned_cols=261 Identities=14% Similarity=0.217 Sum_probs=207.3
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC-CCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY-TKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-~~~~l~s~~~dg~i 403 (597)
+.+|.+.|++++|+|++.+|++|+.||.|++|++.+..... .......+|...|++++|+|. ++.+|++|+.||.|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 35799999999999999999999999999999998651110 112233468899999999985 48899999999999
Q ss_pred EEEeCCCC---------eeeeEEeeccceeEEEEeCCCC--CceEEeecCCCcccCCCCeEEEEEccCCCcceeeec---
Q 042883 404 TIWDVTTS---------QSVMEYEEHEKRAWSVDFSCTE--PSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--- 469 (597)
Q Consensus 404 ~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--- 469 (597)
++||+.++ ..+..+.+|...|.+++|+| + +.++++++.|+ .|++||+++ +..+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg-------~v~iwd~~~-~~~~~~~~~~~ 154 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDG-------ILRLYDALE-PSDLRSWTLTS 154 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTC-------EEEEEECSS-TTCTTCCEEEE
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCC-------cEEEecCCC-hHHhccccccc
Confidence 99999876 55778888999999999999 6 88899988655 499999987 44333222
Q ss_pred ----------cCCCceEEEEecCC----CeEEEeeCCCcEEEEEcCCCcc--eeeeeCCCCceeEEEEeecC----CEEE
Q 042883 470 ----------GHKKAVSYVKFLSN----NELASASTDSSLRLWDVKENLP--LHTFRGHTNEKNFVGLTVNN----EYIA 529 (597)
Q Consensus 470 ----------~~~~~v~~v~~~~~----~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~g----~~l~ 529 (597)
.|...+.+++|+|+ ..+++++.|+.+.+|+...++. +..+.+|...|++++|+|++ .+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 57789999999994 6799999999998888877665 67778899999999999998 8999
Q ss_pred EEeCCCcEEEEEccCCccccccccCCC-----------------------------------CCCCcCcCCCcceEEEEE
Q 042883 530 CGSETNEVFVYHKAISKPAASHRFGSD-----------------------------------ADHVDDDMGSYFISAVCW 574 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~h~~~i~~v~~ 574 (597)
+|+.||.|++||+..+........... .......+|...|++++|
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999999987532111100000 000001247889999999
Q ss_pred ccCCCeEEEecCcccEEEEEecC
Q 042883 575 KSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 575 ~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+|++++|++|+.||.|+|||+.+
T Consensus 315 s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEecCCCcEEEEecCc
Confidence 99999999999999999999863
No 34
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-33 Score=298.94 Aligned_cols=250 Identities=14% Similarity=0.173 Sum_probs=212.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.+.+.+.+++|+|+|++|++++ ++.|++|++.++ .......+|...|++++|+| ++.+|++|+.||.|+||
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~-------~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lW 86 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL-------TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIW 86 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS-------SCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCc-------ccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEe
Confidence 4577888999999999999987 569999999765 33445567899999999999 79999999999999999
Q ss_pred eCCCC--eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 407 DVTTS--QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 407 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
|+.++ .....+.+|.+.|.+++|+| ++..+++++.+.. ..+.|++||. +.....+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~---~~~~v~~wd~---~~~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 87 DTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRE---RFGHVFLFDT---GTSNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp ESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSS---CSEEEEETTT---CCBCBCCCCCSSCEEEEEECSSS
T ss_pred ECCCCcceeeEeecccCCceEEEEECC-CCCEEEEEECCCC---ceeEEEEeeC---CCCcceecCCCCCceEEEECCCC
Confidence 98654 34567788999999999999 7788887775432 2356888884 4566778899999999999999
Q ss_pred C-eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 484 N-ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 484 ~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
. .|++++.|++|++||..+++.+..+.+|...|++++|+|+|++|++|+.|+.|++||+.+++.+..+.... ...
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~----~~~ 235 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS----LKN 235 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT----SSS
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc----ccc
Confidence 3 59999999999999999998899999999999999999999999999999999999999888766553210 011
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+|...|++++|+|+|.+|++++.|++|+|||+.
T Consensus 236 ~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp CSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 2478899999999999999999999999999975
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-33 Score=296.93 Aligned_cols=247 Identities=23% Similarity=0.335 Sum_probs=218.1
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|.+.|++++|+|||++||+|+.|+.|+|||.... ......+|...|++++|+| ++.+|++++.|+.|
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~--------~~~~l~gh~~~V~~l~fsp-dg~~las~~~d~~i 81 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTV 81 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--------EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------EEEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEE
Confidence 46789999999999999999999999999999996432 3334567899999999999 78999999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-------------------------------------
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------------- 446 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------------- 446 (597)
+|||+ +++.+..+.+|...|.+++|+| ++.++++++.|+.+
T Consensus 82 ~vWd~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (577)
T 2ymu_A 82 KLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 159 (577)
T ss_dssp EEEET-TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEC-CCCEEEEEECCCCCEEEEEECC-CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccc
Confidence 99996 6788889999999999999999 88999999888765
Q ss_pred --------------------------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEE
Q 042883 447 --------------------------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA 487 (597)
Q Consensus 447 --------------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~ 487 (597)
++.|+.|++||.. +..+..+.+|...|.+++|+|+ ..|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~ 237 (577)
T 2ymu_A 160 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIA 237 (577)
T ss_dssp TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred ccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC--CcEEEEEecCCCCEEEEEECCCCCEEE
Confidence 6678999999965 5778888899999999999999 7899
Q ss_pred EeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCc
Q 042883 488 SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSY 567 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~ 567 (597)
+++.|+.|++||. +++.+..+.+|...|.+++|+|+|.+|++++.|+.|++||.. ++....+. +|..
T Consensus 238 ~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~-----------~h~~ 304 (577)
T 2ymu_A 238 SASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLT-----------GHSS 304 (577)
T ss_dssp EEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEEC-----------CCSS
T ss_pred EEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEe-----------cCCC
Confidence 9999999999995 477888899999999999999999999999999999999964 44443332 3688
Q ss_pred ceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 568 FISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 568 ~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|++++|+|++.+|++++.||.|++||++
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999974
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.9e-34 Score=281.35 Aligned_cols=249 Identities=16% Similarity=0.265 Sum_probs=209.2
Q ss_pred CCCCcEEEEEEcCC----CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 327 HAANIISSIEFDRD----DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 327 ~~~~~v~~i~~~~~----~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
.|...|++++|+|+ +.+|++|+.||.|++||+.++ .......+|...|.+++|+|.++.+|++|+.||.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~ 139 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA 139 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 37789999999998 679999999999999999876 2233344688999999999967899999999999
Q ss_pred EEEEeCCCCeeeeEE---eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-----------
Q 042883 403 VTIWDVTTSQSVMEY---EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF----------- 468 (597)
Q Consensus 403 i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~----------- 468 (597)
|++||+.+++.+..+ .+|...|.+++|+| ++.++++++.|+. |++||+++ +..+..+
T Consensus 140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~-------i~i~d~~~-~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHS-------LKLWRINS-KRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp EEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSC-------EEEEESCS-HHHHHHHHHHHTCCGGGC
T ss_pred EEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCC-------EEEEECCC-CccccccceeEEecCCCC
Confidence 999999999988888 68999999999999 8889999986555 99999986 3333322
Q ss_pred -----------------ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcc--------------eeeeeCCCCcee
Q 042883 469 -----------------NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLP--------------LHTFRGHTNEKN 517 (597)
Q Consensus 469 -----------------~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~--------------~~~~~~~~~~v~ 517 (597)
.+|...|.+++|+ .++|++++.||.|++||++++.. +..+.+|...|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW 289 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS
T ss_pred cccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE
Confidence 2389999999999 67999999999999999988654 777888999999
Q ss_pred EEEEeec--CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 518 FVGLTVN--NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 518 ~v~~s~~--g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+++|+|+ |.+|++|+.||.|++||+.+++........ ...+.|...|++++|+|++++|++++.||.|+|||+
T Consensus 290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT-----LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE-----ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE-----EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 9999999 999999999999999999988765421110 001123789999999999999999999999999998
Q ss_pred cC
Q 042883 596 AA 597 (597)
Q Consensus 596 ~~ 597 (597)
.+
T Consensus 365 ~~ 366 (366)
T 3k26_A 365 LR 366 (366)
T ss_dssp --
T ss_pred cC
Confidence 63
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-34 Score=287.48 Aligned_cols=269 Identities=18% Similarity=0.289 Sum_probs=219.6
Q ss_pred ccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCc--cCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 325 LFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPR--DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+.+|.+.|++++|+|+ +.+|++++.||.|++||+.+...... ..........|...|.+++|+|+++.+|++++.||
T Consensus 109 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (416)
T 2pm9_A 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188 (416)
T ss_dssp CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS
T ss_pred ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC
Confidence 4579999999999998 89999999999999999987621100 00011122467889999999995589999999999
Q ss_pred cEEEEeCCCCeeeeEEeec------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-cCCCc
Q 042883 402 IVTIWDVTTSQSVMEYEEH------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKKA 474 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~ 474 (597)
.|++||+.+++.+..+..+ ...|.+++|+|++..++++++.|+. ++.|++||++....++..+. +|...
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~----~~~i~~~d~~~~~~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN----DPSILIWDLRNANTPLQTLNQGHQKG 264 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS----SCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC----CceEEEEeCCCCCCCcEEeecCccCc
Confidence 9999999999998888776 7889999999955678999987651 22599999998557788888 89999
Q ss_pred eEEEEecC-C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCcccccc
Q 042883 475 VSYVKFLS-N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 475 v~~v~~~~-~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
|.+++|+| + .+|++++.||.|++||+++++.+..+.+|...|.+++|+|++ .+|++++.||.|++||+..+......
T Consensus 265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 99999999 6 789999999999999999999999999999999999999998 89999999999999999877644322
Q ss_pred cc-------------C--C---------CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 552 RF-------------G--S---------DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 552 ~~-------------~--~---------~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.. . . .........|..++++++|+|+|++|++|+.||.|+||++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 11 0 0 000011112577888999999999999999999999999864
No 38
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.3e-33 Score=276.70 Aligned_cols=253 Identities=15% Similarity=0.210 Sum_probs=205.6
Q ss_pred ccCCCCcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCce--EecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 325 LFHAANIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV--EMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+. ..... ..+|...|.+++|+|+++.+|++++.||
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 35799999999999998 99999999999999999876 11111 1258899999999996678999999999
Q ss_pred cEEEEeCCCCeeeeEEeec---cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE
Q 042883 402 IVTIWDVTTSQSVMEYEEH---EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV 478 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v 478 (597)
.|++||+.+ ..+..+..+ ...|.+++|+| ++.++++++.|+ .|++||++ +..+..+.+|...|.++
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-------~i~i~d~~--~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTG-------RLLLLGLD--GHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTS-------EEEEEETT--SCEEEEEECSSSCEEEE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCC-------CEEEEECC--CCEEEEeccCCCcEEEE
Confidence 999999985 455555443 47899999999 888999998655 49999995 67888889999999999
Q ss_pred EecCC-C-eEEEeeCCCcEEEEEcCC----CcceeeeeCCCCceeEEEEee-cCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 479 KFLSN-N-ELASASTDSSLRLWDVKE----NLPLHTFRGHTNEKNFVGLTV-NNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 479 ~~~~~-~-~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
+|+|+ . .|++++.|+.|++||+++ +..+..+ +|...|.+++|+| +|.+|++++.|+.|++||+.+++....+
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 99999 4 799999999999999997 5556666 6899999999999 9999999999999999999877654332
Q ss_pred ccCC------------------------------------------------CCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 552 RFGS------------------------------------------------DADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 552 ~~~~------------------------------------------------~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
.... ........+|...+..++|+|++.+|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 2100 0000011124667788899999999999
Q ss_pred ecCcccEEEEEecC
Q 042883 584 ANRKGAIKVLVLAA 597 (597)
Q Consensus 584 ~~~dg~v~iwd~~~ 597 (597)
|+ ||.|+|||+++
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999864
No 39
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=288.49 Aligned_cols=259 Identities=12% Similarity=0.161 Sum_probs=203.6
Q ss_pred cCCCCcEEEEEEcCC------CCEEEEeeCCCcEEEEecccCccCCc---cCCCC-ceEecCCCceeEEEEecCCCCEEE
Q 042883 326 FHAANIISSIEFDRD------DELFASAGVSRRIKIFEFSSVVNEPR---DVHYP-MVEMPTRSKLSCLSWNKYTKNLIA 395 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~------~~~l~t~~~d~~v~iw~~~~~~~~~~---~~~~~-~~~~~~~~~i~~v~~~~~~~~~l~ 395 (597)
.+|.+.|++++|+|+ +.+||+++.||+|+|||+..+..... ....+ ....+|...|++++|++ + ..|+
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la 281 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV 281 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence 467899999999996 57999999999999999976521100 01111 23456889999999997 3 5899
Q ss_pred EeeCCCcEEEEeCCCCe-eeeEEeeccceeEEE--EeCCCCC-ceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC
Q 042883 396 SSDYDGIVTIWDVTTSQ-SVMEYEEHEKRAWSV--DFSCTEP-SMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH 471 (597)
Q Consensus 396 s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~~-~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 471 (597)
+|+.||+|++||+.++. ....+.+|...|+++ .|+| ++ .+|++++.|++ |+|||+++ ...+..+.+|
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~t-------vklWD~~~-~~~~~~~~~~ 352 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGY-------FYIFNPKD-IATTKTTVSR 352 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSE-------EEEECGGG-HHHHCEEEEE
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCe-------EEEEECCC-CCcccccccc
Confidence 99999999999998763 456688999999999 5676 65 89999996555 99999997 5666666666
Q ss_pred CC--ceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccc
Q 042883 472 KK--AVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 472 ~~--~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 548 (597)
.. .|.+++|+|+ ..|++++.|++|++||++++..+..+.+|.+.|++|+|+|+|++|++|+.||+|++||+..+ .+
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~ 431 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LL 431 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TT
T ss_pred cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hc
Confidence 53 5889999998 68999999999999999999988899999999999999999999999999999999997543 11
Q ss_pred cc---------------cccCCCC-------------------CCCcCcCCCcceEEEEEccCCC---eEEEecCcccEE
Q 042883 549 AS---------------HRFGSDA-------------------DHVDDDMGSYFISAVCWKSDSP---TMLTANRKGAIK 591 (597)
Q Consensus 549 ~~---------------~~~~~~~-------------------~~~~~~~h~~~i~~v~~~~~~~---~l~s~~~dg~v~ 591 (597)
.. +.+.... ....-.+|...|++|+|+|++. ++++|+.||.|+
T Consensus 432 ~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 432 HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence 11 1111100 0011234789999999999964 899999999999
Q ss_pred EEEec
Q 042883 592 VLVLA 596 (597)
Q Consensus 592 iwd~~ 596 (597)
||+++
T Consensus 512 lw~l~ 516 (524)
T 2j04_B 512 LEYLS 516 (524)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99985
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-32 Score=268.61 Aligned_cols=245 Identities=15% Similarity=0.263 Sum_probs=210.6
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|.+.|++++|+|++++|++++ ||.|++|++.+...... ........|...|.+++|+| ++++|++++.||.|++
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP--VSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSI 123 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC--SEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee--eecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEE
Confidence 47999999999999999999998 99999999987521100 00111125788999999999 7899999999999999
Q ss_pred EeCCCCe--eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 406 WDVTTSQ--SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 406 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
||+.++. ....+..|...|.+++|+| ++.++++++.|+. |++||+++ +..+..+..|...|.+++|+|+
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~-------v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~ 194 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGN-------IAVWDLHN-QTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSC-------EEEEETTT-TEEEEEECCCSSCEEEEEECTT
T ss_pred EECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCc-------EEEEeCCC-CceeeeeecccCceEEEEECCC
Confidence 9998876 5667778999999999999 8889999886554 99999997 7788888899999999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
..|++++.||.|++||+++++.+..+. +...+.+++|+|+|.+|++++.|+.|++||+.+++.....
T Consensus 195 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~----------- 262 (337)
T 1gxr_A 195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----------- 262 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC-----------
T ss_pred CCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc-----------
Confidence 789999999999999999998887775 6778999999999999999999999999999887654221
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|...|.+++|+|++++|++++.||.|++||+.
T Consensus 263 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 263 -LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 358889999999999999999999999999975
No 41
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.2e-32 Score=272.15 Aligned_cols=263 Identities=17% Similarity=0.263 Sum_probs=211.5
Q ss_pred cCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCce------EecCCCceeEEEEecCCCCEEEEee
Q 042883 326 FHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV------EMPTRSKLSCLSWNKYTKNLIASSD 398 (597)
Q Consensus 326 ~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~------~~~~~~~i~~v~~~~~~~~~l~s~~ 398 (597)
.+|.+.|++++|+| ++++|++|+.||.|++|++.+............. ..+|...|.+++|+|+++.+|++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 46999999999999 9999999999999999999876211110000000 0148899999999997788999999
Q ss_pred CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCC--CceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceE
Q 042883 399 YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTE--PSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVS 476 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 476 (597)
.||.|++||+.++.....+. +...+.++.|+|.. +.++++++.|+. |++||+++ +..+..+.+|...|.
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~d~~~-~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPK-------VQLCDLKS-GSCSHILQGHRQEIL 190 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSS-------EEEEESSS-SCCCEEECCCCSCEE
T ss_pred CCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCe-------EEEEeCCC-cceeeeecCCCCcEE
Confidence 99999999999998887775 67889999999843 348888886554 99999997 678888999999999
Q ss_pred EEEecCC-C-eEEEeeCCCcEEEEEcCCCc-ceeee---------------eCCCCceeEEEEeecCCEEEEEeCCCcEE
Q 042883 477 YVKFLSN-N-ELASASTDSSLRLWDVKENL-PLHTF---------------RGHTNEKNFVGLTVNNEYIACGSETNEVF 538 (597)
Q Consensus 477 ~v~~~~~-~-~l~s~~~d~~v~iwd~~~~~-~~~~~---------------~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 538 (597)
+++|+|+ . .|++++.||.|++||++++. .+..+ .+|...|.+++|+|+|.+|++++.||.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 9999999 4 58899999999999998765 33333 57888999999999999999999999999
Q ss_pred EEEccCCccccccccCCC------------------------------------CCCCcCcCCCcceEEEEEccCCCeEE
Q 042883 539 VYHKAISKPAASHRFGSD------------------------------------ADHVDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~~~------------------------------------~~~~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
+||+.+++.......... .....-.+|...|++++|+|++.+|+
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 999998765433221100 00000124789999999999999999
Q ss_pred EecCcccEEEEEecC
Q 042883 583 TANRKGAIKVLVLAA 597 (597)
Q Consensus 583 s~~~dg~v~iwd~~~ 597 (597)
+|+.||.|++||+.+
T Consensus 351 s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 351 SGSRDCNILAWVPSL 365 (408)
T ss_dssp EEETTSCEEEEEECC
T ss_pred EECCCCeEEEEeCCC
Confidence 999999999999864
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-32 Score=273.60 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=209.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.|.++|++++|+|++++|++++.|+.|++||+.+.. .........|...|.+++|+| ++.+|++++.||.|++|
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEE
Confidence 388899999999999999999999999999998751 012233446889999999999 78999999999999999
Q ss_pred eCCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc---ceeeeccCCCceEEEEec
Q 042883 407 DVTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ---PLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 407 d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~ 481 (597)
|+.+++.... +..|...|.+++|+| ++.++++++.|+. |++||++.... ......+|...|.+++|+
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-------v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRV-------ISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSS-------EEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCE-------EEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 9988865444 356889999999999 7889999886555 99999997332 223335688999999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcC------------------CCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 482 SN-NELASASTDSSLRLWDVK------------------ENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
|+ ..|++++.||.|++||++ .++.+..+.+|...+.+++|+|+|.+|++++.||.|++||+
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99 789999999999999954 57788888899999999999999999999999999999999
Q ss_pred cCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 543 AISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+++.+..+.. |...|++++|+|++.+|++| .||.|++|++.+
T Consensus 232 ~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLAS-----------ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEEC-----------SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEcc-----------CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99988777653 47789999999999988887 899999999863
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.9e-32 Score=265.85 Aligned_cols=241 Identities=14% Similarity=0.186 Sum_probs=211.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+|...|.+++|+|++++|++++.||.|++||+.+.. .........|...|.+++|+| ++.++++++.||.|++|
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-----cceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 689999999999999999999999999999998761 012233446788899999999 78999999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-Ce
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 485 (597)
|+.+++.+..+..|...|.+++|+| ++.++++++.|+ .|++||+++ +..+..+. +...+.+++|+|+ ..
T Consensus 169 d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg-------~i~~~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 169 DLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDN-------TVRSWDLRE-GRQLQQHD-FTSQIFSLGYCPTGEW 238 (337)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTS-------EEEEEETTT-TEEEEEEE-CSSCEEEEEECTTSSE
T ss_pred eCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCC-------cEEEEECCC-CceEeeec-CCCceEEEEECCCCCE
Confidence 9999999999999999999999999 888999988554 599999997 55555554 7788999999999 78
Q ss_pred EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCC
Q 042883 486 LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h 565 (597)
+++++.|+.|++||+++++. ..+..|...+.+++|+|+|++|++++.||.|++||+.+++.+.... |
T Consensus 239 l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~------------~ 305 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------E 305 (337)
T ss_dssp EEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------C
T ss_pred EEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec------------C
Confidence 99999999999999998764 4667899999999999999999999999999999999988774432 4
Q ss_pred CcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 566 SYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 566 ~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...|++++|+|++++|++++.||.|++|++.
T Consensus 306 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 7789999999999999999999999999974
No 44
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-32 Score=279.90 Aligned_cols=266 Identities=20% Similarity=0.320 Sum_probs=211.3
Q ss_pred cccCCCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCc---cCCCCceEecCCCceeEEEEecCCCCEEEEeeC
Q 042883 324 DLFHAANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPR---DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
..++|.+.|++++|+|+ +.+|++++.+|.|++|++........ .........+|...|++++|+|++..+|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34578999999999997 68999999999999999976311111 123334556788999999999954449999999
Q ss_pred CCcEEEEeCCCCee-------eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC--cceeeecc
Q 042883 400 DGIVTIWDVTTSQS-------VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS--QPLHVFNG 470 (597)
Q Consensus 400 dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~--~~~~~~~~ 470 (597)
||.|++||+.++.. ...+.+|...|.+++|+|.++.+|++++.|+ .|++||++... ..+..+..
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-------~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-------KLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS-------EEEEEETTCSCSSSCSEEEEC
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-------eEEEEECCCCCCCcceeEeec
Confidence 99999999987322 4566789999999999997788999988655 49999999742 56777888
Q ss_pred CCCceEEEEecCC-C-eEEEeeCCCcEEEEEcCC-CcceeeeeCCCCceeEEEEeecCC-EEEEEeCCCcEEEEEccCCc
Q 042883 471 HKKAVSYVKFLSN-N-ELASASTDSSLRLWDVKE-NLPLHTFRGHTNEKNFVGLTVNNE-YIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 471 ~~~~v~~v~~~~~-~-~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~~ 546 (597)
|...|++++|+|+ . .|++|+.||.|++||+++ +.++..+.+|...|.+++|+|++. +|++++.||.|+|||+....
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9999999999998 3 688999999999999998 667889999999999999999985 78999999999999998732
Q ss_pred ccccc---ccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEec
Q 042883 547 PAASH---RFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 547 ~~~~~---~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~~ 596 (597)
..... ..+.........+|...|++++|+|+++ +|++++.||.|+||+++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 11100 0000000001124688899999999999 89999999999999985
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-34 Score=291.97 Aligned_cols=249 Identities=11% Similarity=0.126 Sum_probs=198.3
Q ss_pred ccCCCCcEEEEEEcCCC---------CEEEE-------------------eeCCCcEEEEecccCccCCccCCCCceEec
Q 042883 325 LFHAANIISSIEFDRDD---------ELFAS-------------------AGVSRRIKIFEFSSVVNEPRDVHYPMVEMP 376 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~---------~~l~t-------------------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 376 (597)
.+.+.+.|++|+|+|++ ++||+ ++.|++|+||++.++.... .......+
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~ 205 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVH 205 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE---EEEEEEEE
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc---eEEEEEEe
Confidence 44567889999999876 56666 4467899999987651100 00112335
Q ss_pred CCCceeEEEEecC-----CCCEEEEeeCCCcEEEEeCCCCee-----------eeEEeeccceeEEEEeCCCCCceEEee
Q 042883 377 TRSKLSCLSWNKY-----TKNLIASSDYDGIVTIWDVTTSQS-----------VMEYEEHEKRAWSVDFSCTEPSMLVSG 440 (597)
Q Consensus 377 ~~~~i~~v~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~ 440 (597)
|.+.|.+++|+|+ ++.+|++|+.||+|+|||+.++.. ...+.+|...|++++|++ + ..|++|
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasg 283 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCG 283 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEE
T ss_pred cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEE
Confidence 6788999999994 257999999999999999976532 246778999999999997 4 478998
Q ss_pred cCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEE--EecCCC--eEEEeeCCCcEEEEEcCCCcceeeeeCCCC--
Q 042883 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYV--KFLSNN--ELASASTDSSLRLWDVKENLPLHTFRGHTN-- 514 (597)
Q Consensus 441 ~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v--~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-- 514 (597)
+.|| +|++||++++..+...+.+|...|.+| .|+|++ +|++++.|++|+|||+++++.+..+.+|..
T Consensus 284 s~Dg-------tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~ 356 (524)
T 2j04_B 284 FKNG-------FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS 356 (524)
T ss_dssp ETTS-------EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred eCCC-------EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence 8655 499999997555667788999999999 567764 789999999999999999888877777653
Q ss_pred ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 515 EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|.+++|+|++..+++++.|+.|++||++++..+..+. +|...|++|+|+|+|++|++|+.||+|+|||
T Consensus 357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-----------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-----------SRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-----------ECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-----------cCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 47899999999999999999999999999887665543 3688999999999999999999999999998
Q ss_pred ec
Q 042883 595 LA 596 (597)
Q Consensus 595 ~~ 596 (597)
+.
T Consensus 426 ~~ 427 (524)
T 2j04_B 426 AA 427 (524)
T ss_dssp SC
T ss_pred ch
Confidence 64
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.2e-33 Score=274.69 Aligned_cols=196 Identities=14% Similarity=0.113 Sum_probs=164.1
Q ss_pred ceeEEEEecCCCCEEEE--eeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 380 KLSCLSWNKYTKNLIAS--SDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
.+.+++|+| +++++++ ++.|+.|+|||+.+++.+..+. |...|++++|+| ++.++++++.++ +.+|+
T Consensus 135 ~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~~--------~~~~~ 203 (365)
T 4h5i_A 135 YTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGSS--------LEVIS 203 (365)
T ss_dssp CEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSSC--------EEEEE
T ss_pred CEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEecccee--------EEEEE
Confidence 467899999 6777654 4578999999999999988885 778899999999 889999987443 67777
Q ss_pred ccCCCcce-eeeccCCCceEEEEecCC-CeEEEeeCCC----cEEEEEcCCCcc----eeeeeCCCCceeEEEEeecCCE
Q 042883 458 LRNISQPL-HVFNGHKKAVSYVKFLSN-NELASASTDS----SLRLWDVKENLP----LHTFRGHTNEKNFVGLTVNNEY 527 (597)
Q Consensus 458 ~~~~~~~~-~~~~~~~~~v~~v~~~~~-~~l~s~~~d~----~v~iwd~~~~~~----~~~~~~~~~~v~~v~~s~~g~~ 527 (597)
..++.... ....+|...|.+++|+|+ ..+++++.|+ .+++||+..+.. ...+.+|...|++++|+|+|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence 77633322 234568889999999999 6788888877 588899876543 3556789999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 528 IACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 528 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
||+|+.|+.|+|||+.+++++..+.. +|..+|++|+|+|||++||+|+.|++|+|||+.
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~----------gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQ----------AHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETT----------SSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecC----------cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999999999999999998876542 479999999999999999999999999999984
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=282.01 Aligned_cols=249 Identities=14% Similarity=0.270 Sum_probs=212.9
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
+.|...|++++|+|++.+|++|+.||.|++|++...... .........|...|++++|+|+++.+|++++.||.|++
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEB
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEE
Confidence 468899999999999999999999999999999873100 01223344688999999999955899999999999999
Q ss_pred EeCCCCe------eeeE---EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC-----
Q 042883 406 WDVTTSQ------SVME---YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH----- 471 (597)
Q Consensus 406 wd~~~~~------~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~----- 471 (597)
||+.++. .... +..|...|.+++|+|+++.++++++.|+. |++||+++ +..+..+..+
T Consensus 141 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------v~iwd~~~-~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF-------ASIWDLKA-KKEVIHLSYTSPNSG 212 (416)
T ss_dssp CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSC-------EEEEETTT-TEEEEEECCCCCSSC
T ss_pred EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCC-------EEEEECCC-CCcceEEeccccccc
Confidence 9998876 3322 35788999999999955889999986555 99999997 6677777665
Q ss_pred -CCceEEEEecCC--CeEEEeeCCC---cEEEEEcCCC-cceeeee-CCCCceeEEEEee-cCCEEEEEeCCCcEEEEEc
Q 042883 472 -KKAVSYVKFLSN--NELASASTDS---SLRLWDVKEN-LPLHTFR-GHTNEKNFVGLTV-NNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 472 -~~~v~~v~~~~~--~~l~s~~~d~---~v~iwd~~~~-~~~~~~~-~~~~~v~~v~~s~-~g~~l~~~~~d~~i~iwd~ 542 (597)
...|.+++|+|+ ..+++++.|+ .|++||++++ .++..+. +|...|.+++|+| ++.+|++++.||.|++||+
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 788999999998 4799999998 9999999986 6778888 8999999999999 8999999999999999999
Q ss_pred cCCccccccccCCCCCCCcCcCCCcceEEEEEccCC-CeEEEecCcccEEEEEec
Q 042883 543 AISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS-PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~~~dg~v~iwd~~ 596 (597)
.+++.+..+. .|...|++++|+|++ .+|++++.||.|+|||+.
T Consensus 293 ~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 293 ESAEQLSQFP-----------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp SSCCEEEEEE-----------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred CCCccceeec-----------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 9998877665 357889999999999 899999999999999985
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-32 Score=275.52 Aligned_cols=242 Identities=17% Similarity=0.273 Sum_probs=209.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.|.+.|++++|+|++.+|++|+.||.|++||+.++ ........|...|.+++|+ +.++++|+.||.|++|
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------TKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHH 201 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-------eEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEE
Confidence 37899999999999999999999999999999876 2233344788999999996 4699999999999999
Q ss_pred eCC-CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--
Q 042883 407 DVT-TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 407 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-- 483 (597)
|+. .+..+..+.+|...|.+++|+| ++.++++++.|+. |++||+++ +..+..+..|...|.+++|+|+
T Consensus 202 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~-------v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~ 272 (401)
T 4aez_A 202 DVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNV-------VQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQS 272 (401)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC-------EEEEETTC-SSEEEEECCCSSCCCEEEECTTST
T ss_pred ecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCe-------EEEccCCC-CCccEEecCCcceEEEEEECCCCC
Confidence 998 4667888889999999999999 8899999986555 99999997 7778888889999999999997
Q ss_pred CeEEEee--CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEE--EeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 484 NELASAS--TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC--GSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 484 ~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
..+++++ .|+.|++||+++++.+..+. +...+.+++|+|+|.++++ |+.||.|++||+.++.........
T Consensus 273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~----- 346 (401)
T 4aez_A 273 NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP----- 346 (401)
T ss_dssp TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----
T ss_pred CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----
Confidence 5566655 79999999999999988886 5678999999999999998 448999999999987665554332
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+|...|++++|+|+|.+|++++.||.|++||+.+
T Consensus 347 ----~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 347 ----AHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ----CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred ----CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 3688999999999999999999999999999853
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=266.10 Aligned_cols=244 Identities=18% Similarity=0.245 Sum_probs=206.9
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|++++| |++.+|++|+.||.|++||+.+. ........|...|.+++|+| ++.+|++|+.||.|+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-------WLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMIN 84 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-------EEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-------EEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEE
Confidence 3579999999999 99999999999999999999765 23344556789999999999 789999999999999
Q ss_pred EEeCCCC---eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc----------------------------------c
Q 042883 405 IWDVTTS---QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV----------------------------------G 447 (597)
Q Consensus 405 iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~----------------------------------~ 447 (597)
+|++... ..+..+.+|...|.++.|. +.++++++.|+.+ +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 9998654 4556666777777777773 3566777766655 5
Q ss_pred CCCCeEEEEEccCCCcceeeecc-CCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCC
Q 042883 448 SADHHIHYYDLRNISQPLHVFNG-HKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~ 526 (597)
+.|+.|++||. ......+.. |...+.+++|+|++.+++++.||.|++||+++++.+..+.+|...|++++|+|+|
T Consensus 162 ~~d~~i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 237 (313)
T 3odt_A 162 SADKTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG- 237 (313)
T ss_dssp ETTSCEEEEET---TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred ECCCCEEEEec---CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-
Confidence 66777999993 445666666 8899999999999779999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 527 YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|++++.||.|++||+.+++.+..+.. |...|++++|+|++. +++++.||.|++||+.
T Consensus 238 ~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSKENGSLKQVITL-----------PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CEEEEETTSEEEEECTTTCCEEEEEEC-----------SSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred CEEEEecCCEEEEEECCCCceeEEEec-----------cCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 588999999999999999988777653 477899999999998 6678999999999985
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.8e-33 Score=277.93 Aligned_cols=260 Identities=14% Similarity=0.189 Sum_probs=213.0
Q ss_pred ccCCCCcEEEEEEcCC----C---CEEEEeeCCCcEEEEecccCccCCccCCCCceEecC-----CCceeEEEEe----c
Q 042883 325 LFHAANIISSIEFDRD----D---ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPT-----RSKLSCLSWN----K 388 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~----~---~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~-----~~~i~~v~~~----~ 388 (597)
+.+|...|++++|+|+ + .+|++++.||.|++|++.+...... ........| ...|.+++|+ |
T Consensus 58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 135 (397)
T 1sq9_A 58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK--VIFEKLDLLDSDMKKHSFWALKWGASNDR 135 (397)
T ss_dssp EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC--EEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc--ccceeecccccccCCCcEEEEEEeeccCC
Confidence 3479999999999999 9 9999999999999999987611000 002233345 4899999999 8
Q ss_pred CCCCE-EEEeeCCCcEEEEeCCC------Ceeee-----EEee-------ccceeEEEEeCCCCCceEEeecCCCcccCC
Q 042883 389 YTKNL-IASSDYDGIVTIWDVTT------SQSVM-----EYEE-------HEKRAWSVDFSCTEPSMLVSGSDDCKVGSA 449 (597)
Q Consensus 389 ~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~ 449 (597)
++.+ |++|+.||.|++||+.+ +..+. .+.+ |...|.+++|+| ++ ++++++.|+
T Consensus 136 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg----- 207 (397)
T 1sq9_A 136 -LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNG----- 207 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTS-----
T ss_pred -CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCC-----
Confidence 6888 99999999999999988 66665 6643 788999999999 66 889888554
Q ss_pred CCeEEEEEccCCCcceeeecc---C---CCceEEEEecCC-CeEEEeeCC---CcEEEEEcCCCcceeeeeC--------
Q 042883 450 DHHIHYYDLRNISQPLHVFNG---H---KKAVSYVKFLSN-NELASASTD---SSLRLWDVKENLPLHTFRG-------- 511 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~~~~~~---~---~~~v~~v~~~~~-~~l~s~~~d---~~v~iwd~~~~~~~~~~~~-------- 511 (597)
.|++||+++ +..+..+.. | ...|.+++|+|+ .+|++++.| |.|++||+++++.+..+.+
T Consensus 208 --~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~ 284 (397)
T 1sq9_A 208 --TVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284 (397)
T ss_dssp --EEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred --cEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc
Confidence 599999997 778888888 8 999999999999 889999999 9999999999999999988
Q ss_pred -----CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCC----------CCCcCcCCCcceEEEEEcc
Q 042883 512 -----HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDA----------DHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 512 -----~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~h~~~i~~v~~~~ 576 (597)
|...|.+++|+|+|.+|++++.||.|++||+.+++.+..+...... .......|...|++++|+|
T Consensus 285 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp -CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence 9999999999999999999999999999999999887776521000 0000112388999999999
Q ss_pred CC----------CeEEEecCcccEEEEEecC
Q 042883 577 DS----------PTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 577 ~~----------~~l~s~~~dg~v~iwd~~~ 597 (597)
++ .+|++|+.||.|+|||+++
T Consensus 365 ~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 365 KGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccccccceEEEecCCCcEEEEEcCC
Confidence 98 7999999999999999864
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-34 Score=283.67 Aligned_cols=242 Identities=11% Similarity=0.142 Sum_probs=195.7
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
+.++|++++|+|++++|++|+.|+.|+||++.++. ........+|...|++++|+| ++++|++|+.||.|++||
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC-
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 56789999999999999999999999999998641 011223346889999999999 689999999999999999
Q ss_pred CCCCe---eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc--ceeeecc-CCCceEEEEec
Q 042883 408 VTTSQ---SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ--PLHVFNG-HKKAVSYVKFL 481 (597)
Q Consensus 408 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~--~~~~~~~-~~~~v~~v~~~ 481 (597)
+.++. ....+.+|...|++++|+| ++.+|++++.|+. |++||++.... ....+.+ |...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARV-------ISVCYFEQENDWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSC-------EEECCC-----CCCCEEECSSCCSCEEEEEEC
T ss_pred cCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCe-------EEEEEECCcccceeeeEeecccCCCeEEEEEc
Confidence 98877 5667778999999999999 8889999886555 99999987322 4667777 99999999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcC------------------CCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 482 SN-NELASASTDSSLRLWDVK------------------ENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
|+ .+|++++.|+.|++||+. .++.+..+ +|...|++++|+|+|++|++++.||.|++||+
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99 789999999999999985 24455666 89999999999999999999999999999999
Q ss_pred cCCcc----ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 543 AISKP----AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 543 ~~~~~----~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+++. +..+. .|...|++++|+|++.+|++|+.|+.+ +|+..
T Consensus 235 ~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 235 SAPEQPPRALITVK-----------LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSTTSCEEECCCEE-----------CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCcceeeEeec-----------CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 98876 44443 358889999999999999999877665 67653
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=277.23 Aligned_cols=254 Identities=19% Similarity=0.233 Sum_probs=211.2
Q ss_pred CCCCcEEEEEEcCCCC-EEEEeeCCCcEEEEec----ccCcc-----CCccCCCC----ceEecCCCceeEEEEecCCCC
Q 042883 327 HAANIISSIEFDRDDE-LFASAGVSRRIKIFEF----SSVVN-----EPRDVHYP----MVEMPTRSKLSCLSWNKYTKN 392 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~----~~~~~-----~~~~~~~~----~~~~~~~~~i~~v~~~~~~~~ 392 (597)
.|.+.|++++|+|++. +|++|+.||.|++|++ .++.. .......+ ....+|...|++++|+| ++.
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 121 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGN 121 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TSS
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CCC
Confidence 4678999999999999 9999999999999999 66520 00000000 01112567999999999 789
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc--------------------------
Q 042883 393 LIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-------------------------- 446 (597)
Q Consensus 393 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-------------------------- 446 (597)
+|++|+.||.|++|| .++..+..+.+|...|.+++|+| ++.++++++.|+.+
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 999999999999999 67788888999999999999999 88899999887764
Q ss_pred -----------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC
Q 042883 447 -----------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE 502 (597)
Q Consensus 447 -----------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~ 502 (597)
++.++.|++||++. +..+..+.+|...|.+++|+|+ ..|++++.||.|++||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE-KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTC-SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCC-CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 12345666676665 4566677789999999999999 7899999999999999999
Q ss_pred CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE
Q 042883 503 NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 503 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
++.+..+.+|...+.+++|+|++ ++++++.||.|++||+.+++.+..+.. |...|.+++|+|++.+|+
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----------DGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----------TTCCEEEEEECTTSSEEE
T ss_pred CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----------CCccEEEEEEcCCCCEEE
Confidence 99999999999999999999999 999999999999999999887776652 477899999999999999
Q ss_pred EecCcccEEEEEec
Q 042883 583 TANRKGAIKVLVLA 596 (597)
Q Consensus 583 s~~~dg~v~iwd~~ 596 (597)
+++.||.|+|||+.
T Consensus 347 ~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 347 VAFMDGQVNVYDLK 360 (425)
T ss_dssp EEETTSCEEEEECH
T ss_pred EEECCCeEEEEECC
Confidence 99999999999985
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=275.90 Aligned_cols=240 Identities=18% Similarity=0.281 Sum_probs=207.0
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
|.+.|++++|+|++++|++|+.||.|++|+.... .......|...|.+++|+| ++.+|++++.||.|++||
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA--------LLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWN 177 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------eeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEE
Confidence 7889999999999999999999999999994332 2334446888999999999 788999999999999999
Q ss_pred CCCCeeeeE--------------------------------------------------------EeeccceeEEEEeCC
Q 042883 408 VTTSQSVME--------------------------------------------------------YEEHEKRAWSVDFSC 431 (597)
Q Consensus 408 ~~~~~~~~~--------------------------------------------------------~~~~~~~v~~~~~~~ 431 (597)
+.+++.+.. +..|...|.+++|+|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence 987654432 335667788999998
Q ss_pred CCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeC
Q 042883 432 TEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG 511 (597)
Q Consensus 432 ~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 511 (597)
++.++++++.|+ .|++||++. +..+..+.+|...|.+++|+|++.+++++.|+.|++||+++++.+..+..
T Consensus 258 -~~~~l~~~~~d~-------~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 328 (425)
T 1r5m_A 258 -TNKLLLSASDDG-------TLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV 328 (425)
T ss_dssp -TTTEEEEEETTS-------CEEEECSSS-BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred -CCCEEEEEcCCC-------EEEEEECCC-CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEeccc
Confidence 777888887555 499999997 67788888899999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc--------------------cccccccCCCCCCCcCcCCCc--ce
Q 042883 512 HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK--------------------PAASHRFGSDADHVDDDMGSY--FI 569 (597)
Q Consensus 512 ~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~~~~h~~--~i 569 (597)
|...+.+++|+|+|.+|++++.||.|++||+.+++ .+..+. .|.. .|
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v 397 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-----------SSQDNDYI 397 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-----------CTTCCCCE
T ss_pred CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-----------CcccCCce
Confidence 99999999999999999999999999999998876 443333 2344 89
Q ss_pred EEEEEccCCCeEEEecCcccEEEEEec
Q 042883 570 SAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 570 ~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++++|+|++++|++++.||.|+|||++
T Consensus 398 ~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999999999999999999986
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=281.26 Aligned_cols=260 Identities=16% Similarity=0.272 Sum_probs=199.4
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCC----ccCCCCceEecCC------------CceeEEEEecC
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEP----RDVHYPMVEMPTR------------SKLSCLSWNKY 389 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~~~------------~~i~~v~~~~~ 389 (597)
..+.+.|++++|+|+|++|++|+.||.|+||++.+..... ..........+|. ..|++++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~- 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP- 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-
Confidence 4578999999999999999999999999999998762100 0000122334566 8899999999
Q ss_pred CC--CEEEEeeCCCcEEEEeCCCCeee---------------------------------------eE-EeeccceeEEE
Q 042883 390 TK--NLIASSDYDGIVTIWDVTTSQSV---------------------------------------ME-YEEHEKRAWSV 427 (597)
Q Consensus 390 ~~--~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~ 427 (597)
++ ..|++++.||.|++||+.++... .. ..+|...|+++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 45 79999999999999998764431 12 35799999999
Q ss_pred EeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee-------eeccCCCceEEEEecCC--CeEEEeeCCCcEEEE
Q 042883 428 DFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH-------VFNGHKKAVSYVKFLSN--NELASASTDSSLRLW 498 (597)
Q Consensus 428 ~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iw 498 (597)
+|+| ++.+|+++ .|+. |++||++.....+. .+.+|...|.+++|+|+ ..|++|+.||.|++|
T Consensus 184 ~~~~-~~~~l~s~-~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 184 SINS-DYETYLSA-DDLR-------INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp EECT-TSSEEEEE-CSSE-------EEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEcC-CCCEEEEe-CCCe-------EEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 9999 88899987 4554 99999985344444 35679999999999998 579999999999999
Q ss_pred EcCCCcc----eeeeeCCCC------------ceeEEEEeecCCEEEEEeCCCcEEEEEccC-CccccccccCCCCCCC-
Q 042883 499 DVKENLP----LHTFRGHTN------------EKNFVGLTVNNEYIACGSETNEVFVYHKAI-SKPAASHRFGSDADHV- 560 (597)
Q Consensus 499 d~~~~~~----~~~~~~~~~------------~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~- 560 (597)
|+++++. +..+.+|.. .|.+++|+|+|.+|++++. +.|++||+.+ ++++..+.........
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence 9999886 788888876 8999999999999999998 9999999987 7766665431100000
Q ss_pred ---cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 561 ---DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ---~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
........+..++|+|++.+|++|+.||.|+|||+.
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 000000113459999999999999999999999975
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-32 Score=272.17 Aligned_cols=257 Identities=14% Similarity=0.186 Sum_probs=207.9
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|...|++++|+|++++|++++.||.|++||+.++. .........|...|.+++|+| ++.+|++|+.||.|+
T Consensus 48 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----WKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVIS 121 (372)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----EEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEE
T ss_pred ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----eeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEE
Confidence 34799999999999999999999999999999997651 011122245788999999999 789999999999999
Q ss_pred EEeCCCCee---eeE-EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC-----------------CCc
Q 042883 405 IWDVTTSQS---VME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN-----------------ISQ 463 (597)
Q Consensus 405 iwd~~~~~~---~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~-----------------~~~ 463 (597)
+||+..+.. ... ..+|...|.+++|+| ++.++++++.|+. |++||++. .+.
T Consensus 122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~-------i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFK-------CRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp EEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSC-------EEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred EEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCC-------EEEEEcccccccccccccccccccchhh
Confidence 999987652 223 356789999999999 8889999886555 99999641 256
Q ss_pred ceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 464 PLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 464 ~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
.+..+.+|...|.+++|+|+ ..|++++.||.|++||+++++.+..+..|...+.+++|+|+|.+|++| .|+.|++|++
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred heEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 77778889999999999999 789999999999999999999999999999999999999999988887 8999999999
Q ss_pred cC--Ccccc--cccc--------------------CCCCC------CCcCcCCCcceEEEEEc-cCC---CeEEEecCcc
Q 042883 543 AI--SKPAA--SHRF--------------------GSDAD------HVDDDMGSYFISAVCWK-SDS---PTMLTANRKG 588 (597)
Q Consensus 543 ~~--~~~~~--~~~~--------------------~~~~~------~~~~~~h~~~i~~v~~~-~~~---~~l~s~~~dg 588 (597)
.. +.... .+.. ..... .....+|...|++++|+ ++| .+|++|+.||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg 352 (372)
T 1k8k_C 273 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 352 (372)
T ss_dssp ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred cCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence 88 43111 1000 00000 11113578999999976 666 8999999999
Q ss_pred cEEEEEec
Q 042883 589 AIKVLVLA 596 (597)
Q Consensus 589 ~v~iwd~~ 596 (597)
.|+|||++
T Consensus 353 ~i~~W~~~ 360 (372)
T 1k8k_C 353 GMSIWDVR 360 (372)
T ss_dssp EEEEEEHH
T ss_pred ceEEEEec
Confidence 99999975
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.2e-32 Score=274.98 Aligned_cols=260 Identities=12% Similarity=0.177 Sum_probs=211.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC----C---CEEEEe
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT----K---NLIASS 397 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~----~---~~l~s~ 397 (597)
+.+|.+.|++++|+| ++|++|+.||.|++|++.+.... ...........|...|++++|+| + + .+|+++
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATT 87 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEE
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEE
Confidence 457999999999998 79999999999999999876211 01112344557889999999999 5 7 899999
Q ss_pred eCCCcEEEEeCCCCee-----eeEEeec-----cceeEEEEeC----CCCCce-EEeecCCCcccCCCCeEEEEEccCC-
Q 042883 398 DYDGIVTIWDVTTSQS-----VMEYEEH-----EKRAWSVDFS----CTEPSM-LVSGSDDCKVGSADHHIHYYDLRNI- 461 (597)
Q Consensus 398 ~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~d~~~~~~d~~i~i~d~~~~- 461 (597)
+.||.|++||+.++.. ...+..| ...|.+++|+ | ++.+ |++++.|+. |++||++..
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~-------i~iwd~~~~~ 159 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGT-------TYIWKFHPFA 159 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSC-------EEEEEEESSS
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCc-------EEEEeCCccc
Confidence 9999999999988876 7888888 5899999999 8 7777 998886554 999999861
Q ss_pred ----Cccee-----ee-------ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeC---C---CCceeEE
Q 042883 462 ----SQPLH-----VF-------NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG---H---TNEKNFV 519 (597)
Q Consensus 462 ----~~~~~-----~~-------~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~---~~~v~~v 519 (597)
...+. .+ ..|...|.+++|+|++.|++++.||.|++||+++++.+..+.. | ...|.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence 23333 55 4488899999999988888999999999999999999999998 8 9999999
Q ss_pred EEeecCCEEEEEeCC---CcEEEEEccCCccccccccCCCCC--CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 520 GLTVNNEYIACGSET---NEVFVYHKAISKPAASHRFGSDAD--HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 520 ~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+|+|++.+|++++.| |.|++||+.+++.+..+....... ......|...|++++|+|++.+|++++.||.|+|||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 999999999988777665311000 000011588999999999999999999999999999
Q ss_pred ec
Q 042883 595 LA 596 (597)
Q Consensus 595 ~~ 596 (597)
+.
T Consensus 320 ~~ 321 (397)
T 1sq9_A 320 VK 321 (397)
T ss_dssp TT
T ss_pred cC
Confidence 85
No 57
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=280.30 Aligned_cols=259 Identities=15% Similarity=0.202 Sum_probs=205.8
Q ss_pred cCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 326 FHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 326 ~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
.+|.+.|++++|+| ++.+|++|+.||+|+|||+.+.... ..........|...|++++|+| ++.+|++|+.||.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG--EVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT--CCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC--cccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEE
Confidence 47899999999999 9999999999999999999762111 1122344456899999999999 789999999999999
Q ss_pred EEeCC---CCeeeeEEeec------------cceeEEEE--eCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee
Q 042883 405 IWDVT---TSQSVMEYEEH------------EKRAWSVD--FSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 405 iwd~~---~~~~~~~~~~~------------~~~v~~~~--~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~ 467 (597)
+||+. +++....+..| ...+.++. +++ ++.++++++.|+ .|++||+++ +..+..
T Consensus 137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~-------~i~iwd~~~-~~~~~~ 207 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLS-------RVIIFDIRT-LERLQI 207 (437)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTS-------EEEEEETTT-CCEEEE
T ss_pred EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCC-------eEEEEeCCC-CeeeEE
Confidence 99994 55555444433 23344444 445 688999988655 499999998 777888
Q ss_pred ecc--CCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEe----ecCCEEEEEeCCCcEEE
Q 042883 468 FNG--HKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLT----VNNEYIACGSETNEVFV 539 (597)
Q Consensus 468 ~~~--~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s----~~g~~l~~~~~d~~i~i 539 (597)
+.+ |...|++++|+|+ .+|++|+.||.|++||+++++.+..+. .|...|.+++|+ +++.+|++|+.||.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 887 8899999999999 789999999999999999999988886 778899999655 46889999999999999
Q ss_pred EEccCCccccccccCCCCC---------------CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 540 YHKAISKPAASHRFGSDAD---------------HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 540 wd~~~~~~~~~~~~~~~~~---------------~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
||+.+++.+..+....... ......|...|++++|+ ++.+|++|+.||.|++||+.+
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence 9999887665554221000 01112378899999999 788999999999999999853
No 58
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=297.27 Aligned_cols=253 Identities=14% Similarity=0.250 Sum_probs=210.6
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC-CCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT-KNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~-~~~l~s~~~dg~i 403 (597)
+.+|.+.|++++|+|++++|++|+.||.|+||++.... ........+|...|++++|+|+. +++|++|+.||.|
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 35799999999999999999999999999999987431 11223445688999999999832 8899999999999
Q ss_pred EEEeCCCCe--eeeEEeeccceeEEEEeCCCC--CceEEeecCCCcccCCCCeEEEEEccCCC-cceeeeccCCCceEEE
Q 042883 404 TIWDVTTSQ--SVMEYEEHEKRAWSVDFSCTE--PSMLVSGSDDCKVGSADHHIHYYDLRNIS-QPLHVFNGHKKAVSYV 478 (597)
Q Consensus 404 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~v 478 (597)
++||+.++. .+..+.+|...|++++|+| + +.++++|+.|+. |++||++... .....+.+|...|.++
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~-------I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGK-------VSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSE-------EEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCc-------EEEEEeecCCCcceeEeecCCCceEEE
Confidence 999999886 6777888999999999999 6 889999986554 9999998742 3445567899999999
Q ss_pred EecC-------------C-CeEEEeeCCCcEEEEEcCCC----cceeeeeCCCCceeEEEEeec---CCEEEEEeCCCcE
Q 042883 479 KFLS-------------N-NELASASTDSSLRLWDVKEN----LPLHTFRGHTNEKNFVGLTVN---NEYIACGSETNEV 537 (597)
Q Consensus 479 ~~~~-------------~-~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~v~~s~~---g~~l~~~~~d~~i 537 (597)
+|+| + ..+++|+.||.|++||++++ .....+.+|...|++++|+|+ |.+|++|+.||.|
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence 9999 4 78999999999999999886 455677899999999999999 8999999999999
Q ss_pred EEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 538 FVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 538 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++||+.++......... ....|...|++++|+|+|.+|++|+.||.|+|||++
T Consensus 232 ~iwd~~~~~~~~~~~~~------~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLL------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEESSSSSCCBCCBS------SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEecCCCCCCcceeEEe------ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 99999886532211111 112368889999999999999999999999999986
No 59
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.3e-32 Score=299.16 Aligned_cols=245 Identities=17% Similarity=0.288 Sum_probs=219.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|++++|+|++.+|++|+.||.|+|||+.++ ........|...|.+++|+| ++.+|++|+.||.|+
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-------VEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIR 80 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-------ceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEE
Confidence 3479999999999999999999999999999999876 22334446889999999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC-C
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS-N 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~-~ 483 (597)
+||+.+++.+..+.+|.+.|++++|+| ++.++++++.|+ .|++||+.++......+.+|...|.+++|+| +
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg-------~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDL-------TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTS-------EEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCC-------EEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 999999999999999999999999999 888899988655 4999999985577788889999999999999 5
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeeeeCCC-CceeEEEEee--cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCC
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTFRGHT-NEKNFVGLTV--NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
..|++++.||.|++||+.++.....+..+. ..+..++|+| +|.+|++++.||.|++||+.+++.+..+.
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------- 225 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE------- 225 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-------
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-------
Confidence 689999999999999999888888877655 8899999999 89999999999999999999888776664
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|++++|+|++.+|++++.||.|++||+.
T Consensus 226 ----~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 226 ----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp ----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred ----CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 357889999999999999999999999999975
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.4e-33 Score=280.73 Aligned_cols=239 Identities=13% Similarity=0.164 Sum_probs=201.5
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
..+++++|+|++++|++++.||.|++||+.+.... .. ......+....|+| ++++|++|+.||.|++||+.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------~~-~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-------KM-LKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-------TT-SCSCCEEEEEEECS-SSCEEEEEETTSCEEEECTT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-------eE-EecCCceEEEEEec-CCCEEEEEECCCCEEEEeCC
Confidence 34557899999999999999999999999876111 11 11223444456777 78999999999999999999
Q ss_pred CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEE
Q 042883 410 TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELAS 488 (597)
Q Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s 488 (597)
++.....+.+|...|++++|+| ++.+|++++.|+ .|++||+.+ +..+..+.+|...|.+++|+|+ ..|++
T Consensus 128 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~-------~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s 198 (420)
T 3vl1_A 128 FNLQREIDQAHVSEITKLKFFP-SGEALISSSQDM-------QLKIWSVKD-GSNPRTLIGHRATVTDIAIIDRGRNVLS 198 (420)
T ss_dssp SCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTS-------EEEEEETTT-CCCCEEEECCSSCEEEEEEETTTTEEEE
T ss_pred CcceeeecccccCccEEEEECC-CCCEEEEEeCCC-------eEEEEeCCC-CcCceEEcCCCCcEEEEEEcCCCCEEEE
Confidence 9988888889999999999999 888999998655 499999997 6778888999999999999999 78999
Q ss_pred eeCCCcEEEEEcCCCcceeeeeC---CCCce---------------------eEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 489 ASTDSSLRLWDVKENLPLHTFRG---HTNEK---------------------NFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 489 ~~~d~~v~iwd~~~~~~~~~~~~---~~~~v---------------------~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
++.||.|++||+++++.+..+.. +...+ .+++|+|+|.+|++|+.||.|++||+.+
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999998888874 33344 4455578899999999999999999998
Q ss_pred CccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEec
Q 042883 545 SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~~ 596 (597)
++....+.. .|...|++++|+|++. +|++|+.||.|++||+.
T Consensus 279 ~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 279 KEQTIQLPS----------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp CCEEEEECC----------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CceeEEccc----------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 887666543 3578899999999999 99999999999999985
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.1e-32 Score=269.00 Aligned_cols=258 Identities=19% Similarity=0.265 Sum_probs=204.7
Q ss_pred CCCCcEEEEEEcCC----CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC---CCEEEEeeC
Q 042883 327 HAANIISSIEFDRD----DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT---KNLIASSDY 399 (597)
Q Consensus 327 ~~~~~v~~i~~~~~----~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~---~~~l~s~~~ 399 (597)
+|.++|++++|+|+ ...+++++.++.|++|++.++.... . ........|...|++++|+|+. +.+|++|+.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR-L-LQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE-E-EEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE-e-eeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 79999999999984 4566777778899999998651100 0 0000111256789999999942 569999999
Q ss_pred CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee---ccCCCceE
Q 042883 400 DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF---NGHKKAVS 476 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~ 476 (597)
||.|++||+.+++.+..+.+|...|.+++|+|.++.++++++.|+. |++||+++ +..+..+ .+|...|.
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~-~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA-------LRLWNIQT-DTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSC-------EEEEETTT-TEEEEEECSTTSCSSCEE
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe-------EEEEEeec-CeEEEEecccccccCcee
Confidence 9999999999999999999999999999999977889999986555 99999997 6677776 67999999
Q ss_pred EEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeee----------------------------CCCCceeEEEEeecCCE
Q 042883 477 YVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR----------------------------GHTNEKNFVGLTVNNEY 527 (597)
Q Consensus 477 ~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~----------------------------~~~~~v~~v~~s~~g~~ 527 (597)
+++|+|+ ..|++++.||.|++||+++++.+..+. +|...|.+++|+ +.+
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 9999999 789999999999999999876554443 388999999998 789
Q ss_pred EEEEeCCCcEEEEEccCCccccccccCCCC---CCCcCcCCCcceEEEEEccC--CCeEEEecCcccEEEEEec
Q 042883 528 IACGSETNEVFVYHKAISKPAASHRFGSDA---DHVDDDMGSYFISAVCWKSD--SPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 528 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~v~~~~~--~~~l~s~~~dg~v~iwd~~ 596 (597)
|++++.||.|++||+.++............ .......|...|++++|+|+ +.+|++|+.||.|+|||+.
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 999999999999999887552211110000 00011235778999999999 9999999999999999986
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=267.15 Aligned_cols=250 Identities=13% Similarity=0.207 Sum_probs=205.5
Q ss_pred cCCCCcEEEEEEcCCCCEE-EEeeC---CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC--CCEEEEeeC
Q 042883 326 FHAANIISSIEFDRDDELF-ASAGV---SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT--KNLIASSDY 399 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l-~t~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~--~~~l~s~~~ 399 (597)
.+|.+.|++++|+|++..+ ++|+. ||.|+||++.++. .......+|...|.+++|+|+. +.+|++|+.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD------LKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc------ccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 3599999999999998655 45655 8999999998761 1123344788999999999943 699999999
Q ss_pred CCcEEEEeCCCCe-eeeEEeeccceeEEEE------eCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC
Q 042883 400 DGIVTIWDVTTSQ-SVMEYEEHEKRAWSVD------FSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK 472 (597)
Q Consensus 400 dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 472 (597)
||.|++||+.++. .+..+.+|...|.++. |+| ++.++++++.|+. |++||++....++..+..|.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~-------i~vwd~~~~~~~~~~~~~~~ 160 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGT-------VKVWDPRQKDDPVANMEPVQ 160 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSC-------EEEECTTSCSSCSEEECCCT
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCe-------EEEEeCCCCCCcceeccccC
Confidence 9999999999887 8888999999999995 566 7889999986555 99999998544777776655
Q ss_pred C----ceEEEE----ecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEee---cCCEEEEEeCCCcEEEE
Q 042883 473 K----AVSYVK----FLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTV---NNEYIACGSETNEVFVY 540 (597)
Q Consensus 473 ~----~v~~v~----~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~---~g~~l~~~~~d~~i~iw 540 (597)
+ .+.+++ |+|+ ..|++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 4 789998 6777 7899999999999999998876544 56788999999999 99999999999999999
Q ss_pred EccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEecCcccEEEEEec
Q 042883 541 HKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 541 d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~~dg~v~iwd~~ 596 (597)
|+.+++....+... ....|...|++++|+|++. +|++|+.||.|++||+.
T Consensus 240 d~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 240 DMRTQHPTKGFASV------SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEETTTEEEEE------EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred eCcCCCcccceeee------ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 99988776554321 0113588999999999998 89999999999999985
No 63
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-31 Score=270.61 Aligned_cols=211 Identities=17% Similarity=0.290 Sum_probs=196.0
Q ss_pred ceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-----
Q 042883 372 MVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV----- 446 (597)
Q Consensus 372 ~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~----- 446 (597)
....+|..+|++++|+| ++.+|++|+.||.|+|||+.+++....+.+|...|++++|+| ++.++++|+.|+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEET
T ss_pred EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Confidence 34567899999999999 789999999999999999999999999999999999999999 88999999999988
Q ss_pred ------------------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcE
Q 042883 447 ------------------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSL 495 (597)
Q Consensus 447 ------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v 495 (597)
++.|+.|++||+++ +..+..+.+|...|.++.|+|+ ..|++|+.|+.|
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 78899999999998 7788889999999999999999 789999999999
Q ss_pred EEEEcCCCcceeeeeCCCCceeEEEEeec--------------------CCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 496 RLWDVKENLPLHTFRGHTNEKNFVGLTVN--------------------NEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 496 ~iwd~~~~~~~~~~~~~~~~v~~v~~s~~--------------------g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
++||+++++....+.+|...|.+++|+|+ |.+|++|+.|+.|++||+.++..+..+.
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~--- 335 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--- 335 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE---
Confidence 99999999999999999999999999996 6799999999999999999998876664
Q ss_pred CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|++++|+|+|.+|++|+.||.|+|||+.
T Consensus 336 --------~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 336 --------GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp --------CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred --------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 368899999999999999999999999999975
No 64
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-32 Score=272.95 Aligned_cols=257 Identities=12% Similarity=0.112 Sum_probs=194.3
Q ss_pred cccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 324 DLFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
.+.+|.+.|++++|+|++++|++++.||.|++||+.++. ..........|...|++++|+| ++.+|++|+.|+.|
T Consensus 50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 124 (377)
T 3dwl_C 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVI 124 (377)
T ss_dssp CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCE
T ss_pred EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeE
Confidence 445799999999999999999999999999999998761 0112233456889999999999 78999999999999
Q ss_pred EEEeCCCCe---eeeEEee-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC-----------------C
Q 042883 404 TIWDVTTSQ---SVMEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI-----------------S 462 (597)
Q Consensus 404 ~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-----------------~ 462 (597)
++||+.++. ....+.+ |...|++++|+| ++.++++++.|+. |++||++.. +
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3dwl_C 125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRK-------AYVLSAYVRDVDAKPEASVWGSRLPFN 196 (377)
T ss_dssp EECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSC-------EEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred EEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCE-------EEEEEEEecccCCCccccccccccchh
Confidence 999998876 4677777 999999999999 8899999986555 999998521 2
Q ss_pred cceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcc----eeeeeCCCCceeEEEEeecCCEEEEEeCCCcE
Q 042883 463 QPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLP----LHTFRGHTNEKNFVGLTVNNEYIACGSETNEV 537 (597)
Q Consensus 463 ~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i 537 (597)
..+..+ +|...|.+++|+|+ .+|++++.||.|++||+.+++. +..+.+|...|.+++|+|+|.+|++|+.++.+
T Consensus 197 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 197 TVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI 275 (377)
T ss_dssp EEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE
T ss_pred hhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE
Confidence 344555 89999999999999 7799999999999999999887 88899999999999999999999988766655
Q ss_pred EEEEccCCcc--ccccccCCC---------------------------------------CCCCcCcCCCcceEEEEEcc
Q 042883 538 FVYHKAISKP--AASHRFGSD---------------------------------------ADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 538 ~iwd~~~~~~--~~~~~~~~~---------------------------------------~~~~~~~~h~~~i~~v~~~~ 576 (597)
+|+...... ...+..... ........|...|+++++.+
T Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~ 354 (377)
T 3dwl_C 276 -LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA 354 (377)
T ss_dssp -EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred -EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence 666553221 111110000 00011123899999999765
Q ss_pred CC-C---eEEEecCcccEEEEEe
Q 042883 577 DS-P---TMLTANRKGAIKVLVL 595 (597)
Q Consensus 577 ~~-~---~l~s~~~dg~v~iwd~ 595 (597)
.+ . .|+|||.||.|+|||+
T Consensus 355 ~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 355 GTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EETTEEEEEEEEETTSEEEEECC
T ss_pred CCCCceEEEEeecCCCcEEEecC
Confidence 44 3 5999999999999986
No 65
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-31 Score=264.06 Aligned_cols=251 Identities=15% Similarity=0.118 Sum_probs=205.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCC-EEEEeeCCCcEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKN-LIASSDYDGIVTI 405 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~-~l~s~~~dg~i~i 405 (597)
+|.+.|++++|+|++.+|++++.||.|+||++...... ........|...|++++|+| ++. +|++|+.||.|++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----VDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----EEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----ccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEE
Confidence 69999999999999999999999999999999876100 01344557889999999999 688 9999999999999
Q ss_pred EeC-CCCeeeeEEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC--------CcceeeeccCCCc
Q 042883 406 WDV-TTSQSVMEYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI--------SQPLHVFNGHKKA 474 (597)
Q Consensus 406 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~ 474 (597)
||+ .++.. ..+.+ |...|.+++|+| +.++++++.|+ .|++||++.. ..++..+. |...
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDG-------LIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK 152 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTS-------EEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCC-------eEEEEcccccccccccccCCeeeEEe-eCCc
Confidence 999 77654 66778 999999999998 77888888554 5999999851 33455555 8899
Q ss_pred eEEEEecCCCeEEEeeCCCcEEEEEcCC-Ccc--eeeeeCCCCceeEEEEee-cCCEEEEEeCCCcEEEEEccCC-----
Q 042883 475 VSYVKFLSNNELASASTDSSLRLWDVKE-NLP--LHTFRGHTNEKNFVGLTV-NNEYIACGSETNEVFVYHKAIS----- 545 (597)
Q Consensus 475 v~~v~~~~~~~l~s~~~d~~v~iwd~~~-~~~--~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~----- 545 (597)
|.+++|+|++ +++++.|+.|++||+++ +.. ......|...+.+++|+| ++.++++++.||.|++|++...
T Consensus 153 v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred eEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9999999988 99999999999999998 543 334456788999999999 9999999999999999999876
Q ss_pred -ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 546 -KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 546 -~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+....+..... ......|...|++++|+|++++|++|+.||.|++||+.
T Consensus 232 ~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 232 SSKRFAFRCHRL--NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CTTCEEEECCCC--CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred cccceeeecccc--cccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 44444432211 01112346699999999999999999999999999985
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=267.62 Aligned_cols=254 Identities=16% Similarity=0.268 Sum_probs=203.9
Q ss_pred CCCCcEEEEEEcCC---CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEE------ecCCCCEEEEe
Q 042883 327 HAANIISSIEFDRD---DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSW------NKYTKNLIASS 397 (597)
Q Consensus 327 ~~~~~v~~i~~~~~---~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~------~~~~~~~l~s~ 397 (597)
+|...|++++|+|+ +.+|++|+.||.|++||+.+.. .......+|...|.+++| +| ++++|++|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~ 135 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTG 135 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCC-CccEEEEE
Confidence 68999999999998 6999999999999999998761 123344568899999966 55 68899999
Q ss_pred eCCCcEEEEeCCCCe-eeeEEeeccc----eeEEEE----eCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee
Q 042883 398 DYDGIVTIWDVTTSQ-SVMEYEEHEK----RAWSVD----FSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF 468 (597)
Q Consensus 398 ~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~ 468 (597)
+.||.|++||+.++. .+..+..|.+ .|++++ |+| ++.++++++.|+ .|++||+++ +.. ...
T Consensus 136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~-------~i~i~d~~~-~~~-~~~ 205 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNG-------DIKLFDLRN-MAL-RWE 205 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTS-------EEEEEETTT-TEE-EEE
T ss_pred eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCC-------eEEEEECcc-Cce-eee
Confidence 999999999999876 6777765554 788888 677 888999988654 499999997 444 344
Q ss_pred ccCCCceEEEEecC---C-CeEEEeeCCCcEEEEEcCCCcceeeee-----CCCCceeEEEEeecCC-EEEEEeCCCcEE
Q 042883 469 NGHKKAVSYVKFLS---N-NELASASTDSSLRLWDVKENLPLHTFR-----GHTNEKNFVGLTVNNE-YIACGSETNEVF 538 (597)
Q Consensus 469 ~~~~~~v~~v~~~~---~-~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~v~~s~~g~-~l~~~~~d~~i~ 538 (597)
..|...|.+++|+| + +.|++++.||.|++||+++++.+..+. +|...|++++|+|+|. +|++|+.||.|+
T Consensus 206 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 206 TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH 285 (357)
T ss_dssp EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEE
Confidence 56889999999998 7 889999999999999999887766665 8999999999999998 899999999999
Q ss_pred EEEccCCccccccccCCCCC--------CCcCcCCCcceEEEEEccCCCeEE-EecCcccEEEEEecC
Q 042883 539 VYHKAISKPAASHRFGSDAD--------HVDDDMGSYFISAVCWKSDSPTML-TANRKGAIKVLVLAA 597 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~~~~~--------~~~~~~h~~~i~~v~~~~~~~~l~-s~~~dg~v~iwd~~~ 597 (597)
+||+..+............. ......|...|++++|+|++++|+ +++.||.|+|||+..
T Consensus 286 iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 286 LWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 99998765442211110000 001124688999999999999998 899999999999863
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.1e-31 Score=266.33 Aligned_cols=241 Identities=17% Similarity=0.285 Sum_probs=205.9
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|...|++|+|+|+|++|++|+.||.|+|||+.++ .......+|...+.+++|+ +.++++|+.|+.+++
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-------~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~ 213 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHH 213 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-------cEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeE
Confidence 368889999999999999999999999999999876 2333445688899998886 469999999999999
Q ss_pred EeCCCC-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC---cceeeeccCCCceEEEEec
Q 042883 406 WDVTTS-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS---QPLHVFNGHKKAVSYVKFL 481 (597)
Q Consensus 406 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~v~~~ 481 (597)
||.... ..+..+.+|...+..+.|+| ++.++++++.|+. |++||...+. ..+.....|...|.+++|+
T Consensus 214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~-------v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 285 (420)
T 4gga_A 214 HDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNL-------VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285 (420)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC-------EEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred eeecccceeeEEecccccceeeeeecC-CCCeeeeeecccc-------ceEEeeccccccceeeeeecccCCceeeeeeC
Confidence 998764 45677889999999999999 8899999986655 9999998632 2355667899999999999
Q ss_pred CC--CeEEE--eeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe--CCCcEEEEEccCCccccccccCC
Q 042883 482 SN--NELAS--ASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS--ETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 482 ~~--~~l~s--~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
|. +.+++ |+.|++|++||+.+++.+..+..+ ..+.++.|++++..+++++ .||.|+|||+.+++.+..+.
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--- 361 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--- 361 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---
T ss_pred CCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc---
Confidence 98 55554 458999999999999998888765 4678899999999888764 68999999999999887764
Q ss_pred CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|...|++++|+|+|.+|+||+.||+|+|||+.
T Consensus 362 --------gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 362 --------GHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp --------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred --------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 478999999999999999999999999999974
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.5e-31 Score=271.29 Aligned_cols=246 Identities=16% Similarity=0.317 Sum_probs=212.2
Q ss_pred ccCCCCc-EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANI-ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~-v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|.+. +.++.| ++++|++|+.||.|++||+.++ .......+|...|++++|+| ++ .+++|+.||.|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK-------KFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTV 185 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC-------cEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCE
Confidence 3467766 466666 5679999999999999999876 22333446899999999998 44 99999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCC-CCCceEEeecCCCcc------------------------------------
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSC-TEPSMLVSGSDDCKV------------------------------------ 446 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~~------------------------------------ 446 (597)
++||+.+++.+..+.+|...|.+++|++ .++.++++++.|+.+
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 9999999999999999999999999985 266889999988765
Q ss_pred --------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcc
Q 042883 447 --------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLP 505 (597)
Q Consensus 447 --------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~ 505 (597)
++.|+.|++||+++ +..+..+.+|...|.+++|+|+ ..+++|+.||.|++||+++++.
T Consensus 266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 45688999999987 7788888899999999999999 8899999999999999999999
Q ss_pred eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec
Q 042883 506 LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 506 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++....... |...+..++|+|++.+|++|+
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH------------HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE------------CTTCCCEEEEEECSSEEEEEE
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec------------CCCCccEEEEEeCCCEEEEec
Confidence 99999999999999996 6899999999999999998876554443 366788899999999999988
Q ss_pred CcccEEEEEecC
Q 042883 586 RKGAIKVLVLAA 597 (597)
Q Consensus 586 ~dg~v~iwd~~~ 597 (597)
||.|+|||+.+
T Consensus 411 -dg~i~iwd~~~ 421 (464)
T 3v7d_B 411 -ENQFNIYNLRS 421 (464)
T ss_dssp -TTEEEEEETTT
T ss_pred -CCeEEEEECCC
Confidence 89999999863
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.8e-31 Score=265.66 Aligned_cols=253 Identities=13% Similarity=0.195 Sum_probs=205.5
Q ss_pred ccCCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|.+.|++++|+| ++.+|++|+.||.|+||++.++..............+|...|++++|+|++.++|++|+.||.|
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 457999999999999 9999999999999999999876221111123345567899999999999545799999999999
Q ss_pred EEEeCCCCeeeeEE--eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCc-eEEEE
Q 042883 404 TIWDVTTSQSVMEY--EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKA-VSYVK 479 (597)
Q Consensus 404 ~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~-v~~v~ 479 (597)
++||+.+++.+..+ .+|...|.+++|+| ++.+|++++.|+ .|++||+++ +..+..+ .+|.+. +..+.
T Consensus 157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~-------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDK-------RVRVIEPRK-GTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp EEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTS-------EEEEEETTT-TEEEEEEECSSCSSSCCEEE
T ss_pred EEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCC-------cEEEEeCCC-CceeeeeccCCCCCcceEEE
Confidence 99999999999998 78999999999999 888999988655 499999997 6777777 678765 89999
Q ss_pred ecCCC-eEEEe---eCCCcEEEEEcCCCcc-eeeee-CCCCceeEEEEeecCCEEEE-EeCCCcEEEEEccCCcc-cccc
Q 042883 480 FLSNN-ELASA---STDSSLRLWDVKENLP-LHTFR-GHTNEKNFVGLTVNNEYIAC-GSETNEVFVYHKAISKP-AASH 551 (597)
Q Consensus 480 ~~~~~-~l~s~---~~d~~v~iwd~~~~~~-~~~~~-~~~~~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~~~~-~~~~ 551 (597)
|+|++ +|++| +.|+.|++||++++.. +.... .|...+..++|+|+|.+|++ |+.||.|++||+.++++ +..+
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 99994 56666 6899999999998664 33333 46778999999999999865 55799999999998875 3332
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.. ..|...|.+++|+|++.++++ .++.+++|++.+
T Consensus 308 ~~---------~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 308 SM---------FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EE---------ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred cc---------cccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 21 114688999999999988775 466999999853
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.6e-31 Score=265.19 Aligned_cols=252 Identities=12% Similarity=0.164 Sum_probs=201.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|.+.|++++|+|++++|++|+.||.|++||+.++ .......+|...|++++|+| ++.+|++|+.||.|++
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-------SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRL 207 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------cCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEE
Confidence 479999999999999999999999999999999876 33344557899999999999 7899999999999999
Q ss_pred EeCCCCeeeeEEeec---c---------------------ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC
Q 042883 406 WDVTTSQSVMEYEEH---E---------------------KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI 461 (597)
Q Consensus 406 wd~~~~~~~~~~~~~---~---------------------~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~ 461 (597)
||+.+++.+..+..+ . ..+.+++|+| ++.++++++.|+. |++||+++.
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~-------i~i~d~~~~ 279 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGV-------ITVHNVFSK 279 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSC-------EEEEETTTC
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCe-------EEEEECCCC
Confidence 999999988888642 2 4455566677 7889999886555 999999984
Q ss_pred CcceeeeccCCCceEEEEecCC-C-eEEEeeCCCcEEEEEcCCCc-ceeeeeC-CCCceeEEEEeecCCEEEEEeCCCcE
Q 042883 462 SQPLHVFNGHKKAVSYVKFLSN-N-ELASASTDSSLRLWDVKENL-PLHTFRG-HTNEKNFVGLTVNNEYIACGSETNEV 537 (597)
Q Consensus 462 ~~~~~~~~~~~~~v~~v~~~~~-~-~l~s~~~d~~v~iwd~~~~~-~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i 537 (597)
.........|...|.+++|+|+ . +|++|+.||.|++||+++++ ++..+.+ |...+.++ +.+++.+|++++.||.|
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSI 358 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEE
T ss_pred ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccE
Confidence 4344444568899999999999 4 89999999999999999875 4777776 56677777 55688899999999999
Q ss_pred EEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC---eEEEecCcccEEEEEec
Q 042883 538 FVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP---TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 538 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~---~l~s~~~dg~v~iwd~~ 596 (597)
++|++............. .......|...|.+++|+|++. .|++++.+|.+.+|+++
T Consensus 359 ~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFE--TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEEECCTTCCSCEECTT--SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EEEeccCCCCCccceecc--CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 999988743222111100 0001123578899999999999 78888889999999986
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.6e-31 Score=254.79 Aligned_cols=242 Identities=17% Similarity=0.272 Sum_probs=189.4
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS 411 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 411 (597)
+++|+||+++ +|++|. |++|+|||+.++. ........+|...|++++|+| ++++|++|+.||.|++||+.++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~-----~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCC-----EEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCc
Confidence 4679999876 677664 9999999998871 011112235777899999999 7899999999999999999999
Q ss_pred eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------------------------------cCCCCeEEE
Q 042883 412 QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------------GSADHHIHY 455 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------------~~~d~~i~i 455 (597)
+.+..+.+|...+.++.+. +.++++++.++.+ ++.|+.|++
T Consensus 100 ~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176 (318)
T ss_dssp EEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence 8877777666665555443 2455555555444 556777999
Q ss_pred EEccCCCc---ceeeeccCCCceEEEEecCC-C-e--EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEE
Q 042883 456 YDLRNISQ---PLHVFNGHKKAVSYVKFLSN-N-E--LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 456 ~d~~~~~~---~~~~~~~~~~~v~~v~~~~~-~-~--l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 528 (597)
||++++.. .......+.+.|..+.++|. . . +++++.++.|++||........... +...+..+.|+|++..+
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKEL 255 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccce
Confidence 99986322 23445567889999999988 3 3 3467788999999999877666554 66778999999999987
Q ss_pred EEEe--CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 529 ACGS--ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 529 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++++ .|+.|+|||+.+++.+..+. +|...|++++|+|+|.+|++|+.||+|+|||+.
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~~~l~-----------gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEc-----------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 7654 78999999999999887764 478999999999999999999999999999974
No 72
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-31 Score=265.76 Aligned_cols=216 Identities=22% Similarity=0.359 Sum_probs=188.2
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-------
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------- 446 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------- 446 (597)
..+|...|++++|+| ++++|++|+.||.|+|||+.+++....+..|...|.+++|+| ++.++++|+.|+.+
T Consensus 62 l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp ECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCC
T ss_pred ccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCC
Confidence 346889999999999 789999999999999999999999999999999999999999 88999999877653
Q ss_pred ------------------------------------cCCCCeEEEEEccCCCcceeee-----ccCCCceEEEEecC-C-
Q 042883 447 ------------------------------------GSADHHIHYYDLRNISQPLHVF-----NGHKKAVSYVKFLS-N- 483 (597)
Q Consensus 447 ------------------------------------~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~v~~v~~~~-~- 483 (597)
++.|+.|++||+++ +..+..+ .+|...|.++.|++ +
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCC
Confidence 67889999999987 5666655 57889999999987 4
Q ss_pred CeEEEeeCCCcEEEEEcC-CCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 484 NELASASTDSSLRLWDVK-ENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
+.|++|+.|++|++||++ .+..+..+.+|.+.|++++|+|+|.+|++|+.||.|++||+.++..+..+..... ..
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~----~~ 294 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD----RN 294 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS----SS
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc----cc
Confidence 789999999999999998 4678889999999999999999999999999999999999999887766543221 11
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..+...|++++|+|+|.+|++|+.||.|+|||+.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 1234568999999999999999999999999964
No 73
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4e-31 Score=262.69 Aligned_cols=243 Identities=14% Similarity=0.231 Sum_probs=197.3
Q ss_pred ccCCCCcEEEEEEcCC---CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 325 LFHAANIISSIEFDRD---DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~---~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+.+|.+.|++++|+|+ |.+|++|+.||.|+||++.+.. ........+|...|++++|+| ++.+|++|+.||
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 108 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDK 108 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECT-TSSEEEEEETTS
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECc-CCCEEEEEcCCC
Confidence 3479999999999998 6999999999999999998630 111134556899999999999 789999999999
Q ss_pred cEEEEeCCCCeeeeEEeeccceeEEEEe--CCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC-------
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKRAWSVDF--SCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK------- 472 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------- 472 (597)
.|++||+.++..+. +..|...|++++| +| ++.++++++.|+. |++||+++ ++.+..+..+.
T Consensus 109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~-------i~vwd~~~-~~~~~~~~~~~~~~~~~~ 178 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKT-------LKFWDTRS-SNPMMVLQLPERCYCADV 178 (368)
T ss_dssp EEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSE-------EEEECSSC-SSCSEEEECSSCEEEEEE
T ss_pred cEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCc-------EEEEECCC-CcEEEEEecCCCceEEEe
Confidence 99999999888766 5579999999999 87 7888999986555 88888876 44444444322
Q ss_pred ----------------------------------CceEEEEecCC-C----eEEEeeCCCcEEEEEcCCC---cceeeee
Q 042883 473 ----------------------------------KAVSYVKFLSN-N----ELASASTDSSLRLWDVKEN---LPLHTFR 510 (597)
Q Consensus 473 ----------------------------------~~v~~v~~~~~-~----~l~s~~~d~~v~iwd~~~~---~~~~~~~ 510 (597)
..+..+.+.++ . .+++++.||.|++||++.. ..+..+.
T Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 23334444433 2 2999999999999999987 5677777
Q ss_pred CCCC------------ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC
Q 042883 511 GHTN------------EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS 578 (597)
Q Consensus 511 ~~~~------------~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 578 (597)
+|.. .|++++|+|+|++|++|+.||.|++||+.+++.+..+. .|...|++++|+|+|
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-----------QLDQPISACCFNHNG 327 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-----------CCSSCEEEEEECTTS
T ss_pred eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-----------CCCCCceEEEECCCC
Confidence 7766 69999999999999999999999999999988876664 358899999999999
Q ss_pred CeEEEecCcccEEEEE
Q 042883 579 PTMLTANRKGAIKVLV 594 (597)
Q Consensus 579 ~~l~s~~~dg~v~iwd 594 (597)
.+|++++.|+..+.|+
T Consensus 328 ~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHE 343 (368)
T ss_dssp SCEEEEECCCSTTCGG
T ss_pred CeEEEEeccccccccc
Confidence 9999999888655444
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.2e-30 Score=265.60 Aligned_cols=238 Identities=19% Similarity=0.357 Sum_probs=202.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+|...|++++| ++++|++|+.||.|++||+.++ .......+|...|.+++| ++++|++|+.||.|++|
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVW 198 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-------CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEE
Confidence 57778999887 7899999999999999999876 233344568899999998 46799999999999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc------------------------------------cCCC
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------------------------------------GSAD 450 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------------------------------------~~~d 450 (597)
|+.+++.+..+.+|...|.+++|++ ..+++++.|+.+ ++.|
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 275 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD 275 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC
Confidence 9999999999999999999999974 588899888877 6778
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEE
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 530 (597)
|.|++||+++ +..+..+.+|...|.++.|+ ++.+++|+.||.|++||+++++.+..+.+|...|.+++| ++.+|++
T Consensus 276 g~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 276 RTIKVWNTST-CEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp SEEEEEETTT-CCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred CeEEEEECCc-CcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE
Confidence 8999999987 67788888899999999884 378999999999999999999999999999999999988 7889999
Q ss_pred EeCCCcEEEEEccCCc---------cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 531 GSETNEVFVYHKAISK---------PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|+.||.|++||+.++. .+..+ .+|...|++++| ++.+|++|+.||.|+|||+.
T Consensus 352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----------~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTL-----------VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEE-----------CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred EeCCCcEEEEECCCCCCccccccchheeec-----------cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 9999999999987655 22222 246889999999 68899999999999999985
No 75
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=1.2e-30 Score=300.69 Aligned_cols=245 Identities=22% Similarity=0.367 Sum_probs=215.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|++++|+|+|+++++|+.||+|+|||+.++ .......+|...|.+++|+| ++.+|++|+.||.|+
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-------EKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVK 682 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------CEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEE
Confidence 4579999999999999999999999999999999876 23334456889999999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCC-CCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 483 (597)
|||+.+++.+..+.+|...|.+++|+|+ ++.++++++.|+. |++||+++ +..+..+.+|.+.|.+++|+|+
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~-------v~vwd~~~-~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF-------LKLWDLNQ-KECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC-------EEEEETTS-SSEEEEECCCSSCEEEEEECSS
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe-------EEEEECCC-cchhheecCCCCCEEEEEEecC
Confidence 9999999999999999999999999985 3457788886554 99999998 7788889999999999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcceeee-----------------------------------------------------
Q 042883 484 -NELASASTDSSLRLWDVKENLPLHTF----------------------------------------------------- 509 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~~~~----------------------------------------------------- 509 (597)
..+++++.||.|++||+.+++....+
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 78999999999999998765433222
Q ss_pred --eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 510 --RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 510 --~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
.+|...+.+++|+|+|.++++++.||.|++||+.++..+..+. +|...|++++|+|+|.+|++++.|
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-----------~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-----------GHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-----------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-----------CCccceEEEEECCCCCEEEEEeCC
Confidence 1677889999999999999999999999999999887776654 368899999999999999999999
Q ss_pred ccEEEEEec
Q 042883 588 GAIKVLVLA 596 (597)
Q Consensus 588 g~v~iwd~~ 596 (597)
|.|++||+.
T Consensus 904 g~v~vw~~~ 912 (1249)
T 3sfz_A 904 QTIRVWETK 912 (1249)
T ss_dssp SCEEEEEHH
T ss_pred CeEEEEEcc
Confidence 999999964
No 76
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.98 E-value=1.7e-30 Score=256.34 Aligned_cols=211 Identities=21% Similarity=0.294 Sum_probs=182.1
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-------
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------- 446 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------- 446 (597)
..+|...|++++|+| ++.+|++|+.||.|+|||..++.....+..|...|.+++|+| ++.++++++.|+.+
T Consensus 60 l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCC
T ss_pred ecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEec
Confidence 446889999999999 789999999999999999988877777777777777777777 66777777665432
Q ss_pred ----------------------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC---CeEEEe
Q 042883 447 ----------------------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN---NELASA 489 (597)
Q Consensus 447 ----------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~---~~l~s~ 489 (597)
++.|+.|++||+.+ ++.+..+.+|...|.+++|+|+ +.|++|
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 55678899999998 7788899999999999999874 589999
Q ss_pred eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcce
Q 042883 490 STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI 569 (597)
Q Consensus 490 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i 569 (597)
+.||.|++||+++++.+..+.+|...|++++|+|+|.+|++|+.|+.|++||++.++.+..+... .+...+
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---------~~~~~~ 287 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---------SIIFGA 287 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------TCCSCE
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---------Ccccce
Confidence 99999999999999999999999999999999999999999999999999999988766544321 124578
Q ss_pred EEEEEccCCCeEEEecCcccEEEEEec
Q 042883 570 SAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 570 ~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+++|+|+|.+|++|+.||.|+|||+.
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 999999999999999999999999974
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=8.7e-31 Score=263.53 Aligned_cols=240 Identities=16% Similarity=0.319 Sum_probs=203.7
Q ss_pred CCCCc--EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 327 HAANI--ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 327 ~~~~~--v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+|... +.+++|++ ..+++++.||.|++|++.++. ........|...|++++|+| ++.+|++|+.||.|+
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~------~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS------VSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVD 159 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC------EEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc------EeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEE
Confidence 44443 45566664 558888899999999998761 11122233788999999999 789999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
+||+.+++.+..+.+|...|.+++|+ +.++++++.|+ .|++||++.....+..+.+|.+.|.+++|+|+
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSG-------AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTS-------EEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCC-------CEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 99999999999999999999999995 47889888655 49999999657778888999999999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCC-EEEEEe--CCCcEEEEEccCCccccccccCCCCCCC
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE-YIACGS--ETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
..|++++.||.|++||+++++.+..+.+|...|.+++|+|++. ++++|+ .|+.|++||+.+++.+..+..
T Consensus 230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~------- 302 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA------- 302 (401)
T ss_dssp SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-------
T ss_pred CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-------
Confidence 7899999999999999999999999999999999999999764 566654 799999999999988777652
Q ss_pred cCcCCCcceEEEEEccCCCeEEE--ecCcccEEEEEecC
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLT--ANRKGAIKVLVLAA 597 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s--~~~dg~v~iwd~~~ 597 (597)
...|.+++|+|++.+|++ |+.||.|+|||+.+
T Consensus 303 -----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 303 -----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp -----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred -----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 567999999999999999 55899999999863
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=2.4e-30 Score=260.48 Aligned_cols=245 Identities=13% Similarity=0.192 Sum_probs=202.8
Q ss_pred EEEEEEcCCCCEE-EEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 332 ISSIEFDRDDELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 332 v~~i~~~~~~~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
...++++|+...+ ++++.||.|+||++....... .......+|...|++++|+|.++.+|++|+.||.|+|||+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 4457888876544 457889999999986541111 122234568899999999996789999999999999999988
Q ss_pred C-------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee--ccCCCceEEEEec
Q 042883 411 S-------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF--NGHKKAVSYVKFL 481 (597)
Q Consensus 411 ~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~ 481 (597)
+ ..+..+.+|...|.+++|+|++..++++++.|+. |++||+++ +..+..+ .+|...|.+++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~-------i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV-------ILVWDVGT-GAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC-------EEEEETTT-TEEEEEECTTTCCSCEEEEEEC
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE-------EEEEECCC-CCccEEEecCCCCCceEEEEEC
Confidence 7 5678888999999999999944479999986555 99999997 6777788 7899999999999
Q ss_pred CC-CeEEEeeCCCcEEEEEcCCCcceeee-eCCCCc-eeEEEEeecCCEEEEE---eCCCcEEEEEccCCcc-ccccccC
Q 042883 482 SN-NELASASTDSSLRLWDVKENLPLHTF-RGHTNE-KNFVGLTVNNEYIACG---SETNEVFVYHKAISKP-AASHRFG 554 (597)
Q Consensus 482 ~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~-v~~v~~s~~g~~l~~~---~~d~~i~iwd~~~~~~-~~~~~~~ 554 (597)
|+ ..|++++.||.|++||+++++.+..+ .+|.+. +..+.|+|+|.+|++| +.|+.|++||+.+++. +.....
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~- 264 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL- 264 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-
Confidence 99 78999999999999999999999988 678775 8999999999999999 7899999999988664 333322
Q ss_pred CCCCCCcCcCCCcceEEEEEccCCCeEE-EecCcccEEEEEecC
Q 042883 555 SDADHVDDDMGSYFISAVCWKSDSPTML-TANRKGAIKVLVLAA 597 (597)
Q Consensus 555 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~-s~~~dg~v~iwd~~~ 597 (597)
.|...|.+++|+|++.+|+ +|+.||.|++||+.+
T Consensus 265 ---------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 265 ---------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp ---------CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred ---------cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 2367799999999999986 566899999999863
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-30 Score=264.40 Aligned_cols=257 Identities=14% Similarity=0.175 Sum_probs=201.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecc---cCccCCccCCCCceEe---c--CCCceeEEE--EecCCCCEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFS---SVVNEPRDVHYPMVEM---P--TRSKLSCLS--WNKYTKNLIAS 396 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~---~~~~~~~~~~~~~~~~---~--~~~~i~~v~--~~~~~~~~l~s 396 (597)
+|.+.|++++|+|++.+|++|+.||.|++||+. .+.............. . +...+.++. +++ ++.+|++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 187 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVA 187 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEE
Confidence 689999999999999999999999999999995 2200000000011111 1 456677777 445 6889999
Q ss_pred eeCCCcEEEEeCCCCeeeeEEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-cCCC
Q 042883 397 SDYDGIVTIWDVTTSQSVMEYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKK 473 (597)
Q Consensus 397 ~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~ 473 (597)
|+.||.|++||+++++.+..+.+ |...|++++|+| ++.++++|+.|+. |++||++. +..+..+. .|..
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~-------i~iwd~~~-~~~~~~~~~~~~~ 258 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGI-------IDIWDIRF-NVLIRSWSFGDHA 258 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSC-------EEEEETTT-TEEEEEEBCTTCE
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCe-------EEEEEcCC-ccEEEEEecCCCC
Confidence 99999999999999999999988 889999999999 7899999986655 99999997 77777775 6888
Q ss_pred ceEEEEecC----C-CeEEEeeCCCcEEEEEcCCCcceeeeeC--------------------------CCCceeEEEEe
Q 042883 474 AVSYVKFLS----N-NELASASTDSSLRLWDVKENLPLHTFRG--------------------------HTNEKNFVGLT 522 (597)
Q Consensus 474 ~v~~v~~~~----~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------------------------~~~~v~~v~~s 522 (597)
.|.+++|+| + .+|++++.||.|++||+++++.+..+.+ |...|++++|+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 999997665 4 4799999999999999999887777664 44557889999
Q ss_pred ecCCEEEEEeCCCcEEEEEccCCccccccccCC--------------------------CCCCCcCcCCCcceEEEEEcc
Q 042883 523 VNNEYIACGSETNEVFVYHKAISKPAASHRFGS--------------------------DADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 523 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------~~~~~~~~~h~~~i~~v~~~~ 576 (597)
++.+|++|+.||.|++||+.+++....+.... .........|...|++++|++
T Consensus 339 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~ 417 (437)
T 3gre_A 339 -NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE 417 (437)
T ss_dssp -TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred -CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence 78899999999999999999988776554210 000011123789999999998
Q ss_pred C--CCeEEEecCcccEEEEE
Q 042883 577 D--SPTMLTANRKGAIKVLV 594 (597)
Q Consensus 577 ~--~~~l~s~~~dg~v~iwd 594 (597)
+ +.+|++|+.||.|+||+
T Consensus 418 ~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 418 VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSSEEEEEEETTSCEEEEC
T ss_pred cCCceEEEEEcCCceEEEeC
Confidence 8 78999999999999995
No 80
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=3.9e-30 Score=249.95 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=179.5
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC-----CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccC
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT-----SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~ 448 (597)
..+|.+.|++++|+|+++++|++|+.|+.|++|++.. +..+..+.+|...|.+++|+| ++.++++++.|+.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~--- 88 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKT--- 88 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE---
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCE---
Confidence 3478999999999996668999999999999999854 345678889999999999999 8899999986555
Q ss_pred CCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeec---
Q 042883 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVN--- 524 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~--- 524 (597)
|++||+.+ +..+..+.+|...|.+++|+|+ ..|++|+.|++|++||++ +..+..+.+|...|.++.|+|.
T Consensus 89 ----v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 89 ----LRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp ----EEEEETTT-TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred ----EEEEECCC-CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence 99999998 7788889999999999999999 789999999999999987 5678888899999999999985
Q ss_pred ---CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 525 ---NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 525 ---g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+.+|++++.|+.|++||+.+++....+. +|...|++++|+|+|.+|++|+.||.|+|||+.
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----------~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFI-----------GHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEEC-----------CCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeec-----------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4589999999999999998877665543 468899999999999999999999999999975
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=278.48 Aligned_cols=250 Identities=13% Similarity=0.139 Sum_probs=200.9
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
.++|.+.|++++|+|++.+||+|+.||+|+||+.... .......|...|.+++|+| +.+|++++.|+.|+
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~--------~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~ 82 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV--------EVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVY 82 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC--------EEEEECSSCCCEEEEEEET--TTEEEEEETTCEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc--------EEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEE
Confidence 3579999999999999999999999999999998654 2233345678999999999 55999999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce-----------eeeccCCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL-----------HVFNGHKK 473 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~-----------~~~~~~~~ 473 (597)
|||+.+++.+..+. |...|++++|+| ++.++++|+.||. |++||++. +... ..+.+|.+
T Consensus 83 lWd~~~~~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~-------V~lwd~~~-~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 83 VLSLYSQKVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGS-------MIVYDIDR-DQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp EEETTTCSEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSC-------EEEEETTT-TEEEEEEECCHHHHHTCSSSCCC
T ss_pred EEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCc-------EEEEECCC-CccccceeccccccccccccCCC
Confidence 99999998888885 678899999999 8899999986555 99999986 3322 23467899
Q ss_pred ceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeCC------------------CCceeEEEEeecCCEEEEEeC
Q 042883 474 AVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRGH------------------TNEKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 474 ~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------------------~~~v~~v~~s~~g~~l~~~~~ 533 (597)
.|.+++|+|+ +.+++|+.||.| +||+++++.+..+..| ...|++++|+|+|.+|++|+.
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 9999999997 689999999999 9999999888888765 467999999999999999999
Q ss_pred CCcEEEEEccCCccccccccCCCCCC-------CcCcCCCcceEEEEEc----cCC-CeEEEecCc-----ccEEEEEe
Q 042883 534 TNEVFVYHKAISKPAASHRFGSDADH-------VDDDMGSYFISAVCWK----SDS-PTMLTANRK-----GAIKVLVL 595 (597)
Q Consensus 534 d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~h~~~i~~v~~~----~~~-~~l~s~~~d-----g~v~iwd~ 595 (597)
||.|++||+.+++.+....+.....+ .....|..+|++++|+ |++ .+|++|+.| +.+++|++
T Consensus 232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 99999999999887653221100000 0000246689999996 443 467777665 37889985
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-30 Score=256.47 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=189.1
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccC----------------------CccCC-CCceEecCCCceeEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNE----------------------PRDVH-YPMVEMPTRSKLSCL 384 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~----------------------~~~~~-~~~~~~~~~~~i~~v 384 (597)
-...|.+++|+|||+++|+++.|++|+ |......- ..... .......+...|.++
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v 91 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC 91 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence 346899999999999999999999996 43322100 00000 011222457789999
Q ss_pred EEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccc-----eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc
Q 042883 385 SWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEK-----RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR 459 (597)
Q Consensus 385 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~ 459 (597)
+|+| ++..|++++.||.|+|||..+ .+..+. |.. .|.+++|+| ++++|++|+.||. |++||+.
T Consensus 92 awSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGt-------VkIWd~~ 159 (588)
T 2j04_A 92 KPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGE-------LQFFSIR 159 (588)
T ss_dssp EECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSE-------EEEEECC
T ss_pred EECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCE-------EEEEECC
Confidence 9999 899999999999999999543 666666 655 499999999 9999999996555 9999998
Q ss_pred CCCc-------ceeee----ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcc---eeee-eCCCCceeEEEEeec
Q 042883 460 NISQ-------PLHVF----NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLP---LHTF-RGHTNEKNFVGLTVN 524 (597)
Q Consensus 460 ~~~~-------~~~~~----~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~-~~~~~~v~~v~~s~~ 524 (597)
. +. .+.++ .+|.+.|.+++|+|++ +++++.|++|++||+.++.. ..++ .+|...|.+++|+
T Consensus 160 ~-~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 160 K-NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp C-CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred C-CccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 7 43 24565 6688899999999999 99999999999999988763 3456 4788899999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEE--ccCCCeEEEecCcccEEEEEec
Q 042883 525 NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCW--KSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 525 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~--~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|.+|++++ ++.|++||+.+++..... . +|...|++++| +|++..|++++.||+ ++|.++
T Consensus 236 g~~LASa~-~~tIkLWd~~~~~~~~~~-~----------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 236 DYKVVLTC-PGYVHKIDLKNYSISSLK-T----------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEC-SSEEEEEETTTTEEEEEE-C----------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEe-CCeEEEEECCCCeEEEEE-c----------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 68999887 699999999887764322 1 26889999999 999999999999999 999864
No 83
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.1e-29 Score=248.51 Aligned_cols=256 Identities=15% Similarity=0.200 Sum_probs=191.0
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|.+.|++++|+|||++|++|+.++ ++||++... ...... +...+..+++.+.++.++++|+.|+.|+|
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AHIMSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EEEEEE-ECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ceeeee-ecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 46899999999999999999998775 789998765 111111 22357788888843334467888899999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------------cCCCCe
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---------------------------------GSADHH 452 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---------------------------------~~~d~~ 452 (597)
||+.+++.+..+. +...|.++.|++ +. ++++.+ +.+ |+.+|.
T Consensus 86 Wd~~~~~~~~~~~-~~~~v~~v~~~~-~~--~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~ 160 (355)
T 3vu4_A 86 WDDVKKQDVSRIK-VDAPVKDLFLSR-EF--IVVSYG-DVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ 160 (355)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECS-SE--EEEEET-TEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred EECCCCcEEEEEE-CCCceEEEEEcC-CE--EEEEEc-CEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence 9999999988885 667899999986 32 111111 110 356788
Q ss_pred EEEEEccCCC--------------cc-eeeeccCCCceEEEEecCC-CeEEEeeCCCc-EEEEEcCCCcceeeee-C-CC
Q 042883 453 IHYYDLRNIS--------------QP-LHVFNGHKKAVSYVKFLSN-NELASASTDSS-LRLWDVKENLPLHTFR-G-HT 513 (597)
Q Consensus 453 i~i~d~~~~~--------------~~-~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~-v~iwd~~~~~~~~~~~-~-~~ 513 (597)
|++||+++.. .+ +..+.+|.+.|.+++|+|+ .+|++|+.|++ |+|||+++++.+..+. + |.
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR 240 (355)
T ss_dssp EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 9999998632 12 7788999999999999999 78999999998 9999999999999998 5 99
Q ss_pred CceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC-----CCCCC-------cCcCCCcceEEEEEccCCCeE
Q 042883 514 NEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-----DADHV-------DDDMGSYFISAVCWKSDSPTM 581 (597)
Q Consensus 514 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~-------~~~~h~~~i~~v~~~~~~~~l 581 (597)
..|++++|+|+|++|++++.|+.|+|||+..+.......+.. ..... ....+......++|+++|.+|
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l 320 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV 320 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence 999999999999999999999999999998654322111110 00000 000112334679999999999
Q ss_pred EEecCcccEEEEEec
Q 042883 582 LTANRKGAIKVLVLA 596 (597)
Q Consensus 582 ~s~~~dg~v~iwd~~ 596 (597)
++++.||.+++|++.
T Consensus 321 ~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 321 VVWPHTRMIETFKVV 335 (355)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEEeCCCeEEEEEEE
Confidence 999999999999975
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.3e-29 Score=241.89 Aligned_cols=206 Identities=17% Similarity=0.208 Sum_probs=173.6
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC--CeeeeEEeeccceeEEEEeCCC-CCceEEeecCCCcccCCC
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT--SQSVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d 450 (597)
..+|...|++++|+| ++.+|++|+.|+.|+|||+.+ .+.+..+.+|.++|++++|+|. ++.+|++++.|++
T Consensus 5 ~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~----- 78 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK----- 78 (297)
T ss_dssp CCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE-----
T ss_pred ccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE-----
Confidence 346889999999999 799999999999999999974 3677889999999999999863 4789999996555
Q ss_pred CeEEEEEccCCC-cceeeeccCCCceEEEEecCC---CeEEEeeCCCcEEEEEcCCCc--ceeeeeCCCCceeEEEEeec
Q 042883 451 HHIHYYDLRNIS-QPLHVFNGHKKAVSYVKFLSN---NELASASTDSSLRLWDVKENL--PLHTFRGHTNEKNFVGLTVN 524 (597)
Q Consensus 451 ~~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~---~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~v~~s~~ 524 (597)
|++||++++. ..+..+.+|...|.+++|+|+ .+|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 79 --v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 79 --VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp --EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred --EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 9999998632 356677889999999999996 579999999999999998753 24567789999999999997
Q ss_pred -------------CCEEEEEeCCCcEEEEEccCCcccc--ccccCCCCCCCcCcCCCcceEEEEEccCC---CeEEEecC
Q 042883 525 -------------NEYIACGSETNEVFVYHKAISKPAA--SHRFGSDADHVDDDMGSYFISAVCWKSDS---PTMLTANR 586 (597)
Q Consensus 525 -------------g~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~h~~~i~~v~~~~~~---~~l~s~~~ 586 (597)
+++|++|+.|+.|++||+.++.... ...+ .+|...|.+++|+|++ .+|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l---------~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL---------EGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE---------CCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe---------cCCCCceEEEEECCCCCCceEEEEEEC
Confidence 5799999999999999998765321 1111 1478899999999985 78999999
Q ss_pred cccEEEEEec
Q 042883 587 KGAIKVLVLA 596 (597)
Q Consensus 587 dg~v~iwd~~ 596 (597)
|++|+|||++
T Consensus 228 D~~v~iWd~~ 237 (297)
T 2pm7_B 228 DRTCIIWTQD 237 (297)
T ss_dssp TSCEEEEEES
T ss_pred CCcEEEEEeC
Confidence 9999999985
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=9.2e-29 Score=252.49 Aligned_cols=248 Identities=19% Similarity=0.325 Sum_probs=208.6
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|++++|+ +.++++|+.||.|++||+.++ .......+|...|.+++|+ ++.+++|+.||.|+
T Consensus 155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG-------ECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLR 222 (445)
T ss_dssp CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-------cEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEE
Confidence 34799999999997 569999999999999999876 2223344678889999886 35788999999999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------------cCCCC
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---------------------------------GSADH 451 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---------------------------------~~~d~ 451 (597)
+||+.+++.+..+.+|...|.+++| ++.++++++.|+.+ ++.|+
T Consensus 223 ~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 299 (445)
T 2ovr_B 223 VWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 299 (445)
T ss_dssp EEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred EEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence 9999888888888888888998888 45778888888876 67788
Q ss_pred eEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeC---CCCceeEEEEeecCCEE
Q 042883 452 HIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG---HTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 452 ~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~v~~s~~g~~l 528 (597)
.|++||+++ +..+..+.+|...+.++.+++ +.+++|+.||.|++||+++++.+..+.+ |...|++++|+ +.+|
T Consensus 300 ~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 300 SIRVWDVET-GNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CEEEEETTT-CCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred eEEEEECCC-CCEEEEEcCCcccEEEEEEeC-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 899999987 677888888999899888753 6899999999999999999999988876 78889999984 7899
Q ss_pred EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCccc----EEEEEecC
Q 042883 529 ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGA----IKVLVLAA 597 (597)
Q Consensus 529 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~----v~iwd~~~ 597 (597)
++|+.||.|++||+.+++.+..+... ...+|...|++++|+|++.++++|+.||+ |.|||+++
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTL------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEEC------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeecc------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999887766321 11235889999999999999999999998 99999863
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.2e-30 Score=260.18 Aligned_cols=253 Identities=17% Similarity=0.249 Sum_probs=193.3
Q ss_pred CcEEEEEEcCCC--CEEEEeeCCCcEEEEecccCccCC------------------ccCCCC---------------ceE
Q 042883 330 NIISSIEFDRDD--ELFASAGVSRRIKIFEFSSVVNEP------------------RDVHYP---------------MVE 374 (597)
Q Consensus 330 ~~v~~i~~~~~~--~~l~t~~~d~~v~iw~~~~~~~~~------------------~~~~~~---------------~~~ 374 (597)
+.|++++|+|++ ..|++++.||.|++|++....... .....+ ...
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 889999999998 799999999999999987641100 000000 112
Q ss_pred ecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC-Ceeee-------EEeeccceeEEEEeCCCCCceEEeecCCCcc
Q 042883 375 MPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT-SQSVM-------EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV 446 (597)
Q Consensus 375 ~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~ 446 (597)
.+|...|++++|+| ++.+|++| .||.|++||+.+ +.... .+.+|...|++++|+|+++.+|++++.|+.
T Consensus 174 ~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~- 250 (447)
T 3dw8_B 174 NAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT- 250 (447)
T ss_dssp SCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-
T ss_pred cCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-
Confidence 46889999999999 78999998 799999999984 33443 245789999999999943489999986655
Q ss_pred cCCCCeEEEEEccCCCcc----eeeeccCCC------------ceEEEEecCC-CeEEEeeCCCcEEEEEcCC-Ccceee
Q 042883 447 GSADHHIHYYDLRNISQP----LHVFNGHKK------------AVSYVKFLSN-NELASASTDSSLRLWDVKE-NLPLHT 508 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~~----~~~~~~~~~------------~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~-~~~~~~ 508 (597)
|++||+++ +.. +..+.+|.. .|.+++|+|+ .+|++++. +.|++||+++ ++++..
T Consensus 251 ------i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 251 ------IRLCDMRA-SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp ------EEEEETTT-CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred ------EEEEECcC-CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce
Confidence 99999997 444 677877776 8999999999 67888888 9999999997 888999
Q ss_pred eeCCCCc---------------eeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCC---------------
Q 042883 509 FRGHTNE---------------KNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDAD--------------- 558 (597)
Q Consensus 509 ~~~~~~~---------------v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------- 558 (597)
+.+|... +..++|+|+|.+|++|+.||.|++||+.+++.+..........
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence 9888642 2249999999999999999999999999887653211100000
Q ss_pred ------CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 559 ------HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 559 ------~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
......+...|..++|+|++.+|++++.++ +++|.
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 000112356799999999999999998876 77776
No 87
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=256.11 Aligned_cols=254 Identities=12% Similarity=0.191 Sum_probs=198.7
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCc---cCCc-cCCC-----------------------------------
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVV---NEPR-DVHY----------------------------------- 370 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~---~~~~-~~~~----------------------------------- 370 (597)
.++.+++|+|+|++|+++ .++.|++||+.++. .... ....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999966665 57899999988763 0000 0000
Q ss_pred -----------CceEecCCCceeEEEEecCCCCEE-EEeeCCCcEEEEeCC--CCeeeeEEe--eccceeEEEEeCCCCC
Q 042883 371 -----------PMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDGIVTIWDVT--TSQSVMEYE--EHEKRAWSVDFSCTEP 434 (597)
Q Consensus 371 -----------~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 434 (597)
.....+|...|++++|+| ++.+| ++|+.||.|+|||+. ++..+..+. .|...|++++|+| ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CC
Confidence 000013445799999999 67775 899999999999998 888887776 5668899999999 88
Q ss_pred ceEEeecCCCcccCCCCeEEEEEccCCCcce----eeeccCCCceEEEEecCC---C-eEEEeeCCCcEEEEEcCCCcce
Q 042883 435 SMLVSGSDDCKVGSADHHIHYYDLRNISQPL----HVFNGHKKAVSYVKFLSN---N-ELASASTDSSLRLWDVKENLPL 506 (597)
Q Consensus 435 ~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~v~~v~~~~~---~-~l~s~~~d~~v~iwd~~~~~~~ 506 (597)
.+|++++.+ |.|++|++.. .... ..+.+|...|.+++|+|+ + +|++++.|+.|++||+++++.+
T Consensus 162 ~~l~~~~~~-------g~v~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 162 TTVIIADKF-------GDVYSIDINS-IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp SEEEEEETT-------SEEEEEETTS-CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred CEEEEEeCC-------CcEEEEecCC-cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 899998854 4599999986 3333 367789999999999998 6 6899999999999999999888
Q ss_pred ee-eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCC--------------CCCcCcCCCcceEE
Q 042883 507 HT-FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDA--------------DHVDDDMGSYFISA 571 (597)
Q Consensus 507 ~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------~~~~~~~h~~~i~~ 571 (597)
.. +.+|...|++++|+ +|.+|++|+.|+.|++||+.+++.+..+...... .......+...|.+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 87 55899999999999 9999999999999999999999877665432100 00000122567999
Q ss_pred EEEccCCCeEEEec-CcccEEEEEe
Q 042883 572 VCWKSDSPTMLTAN-RKGAIKVLVL 595 (597)
Q Consensus 572 v~~~~~~~~l~s~~-~dg~v~iwd~ 595 (597)
++|+|++++|++++ .|+.|+||++
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999988 8999999998
No 88
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=8.7e-29 Score=252.68 Aligned_cols=244 Identities=18% Similarity=0.295 Sum_probs=195.5
Q ss_pred ccCCCCcE-EEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANII-SSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v-~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|.+.| .++ +++|++|++|+.||.|++||+.++ .......+|...|++++|+ ++++++|+.||.|
T Consensus 114 l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i 181 (445)
T 2ovr_B 114 LKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTG-------KCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTL 181 (445)
T ss_dssp EECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTC-------CEEEECCCCSSCEEEEEEE---TTEEEEEETTSCE
T ss_pred ecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeE
Confidence 34677765 554 446899999999999999999876 2223344688999999998 4699999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------------cCCC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---------------------------------GSAD 450 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---------------------------------~~~d 450 (597)
++||+.+++.+..+.+|...|.++.|++ ..+++++.|+.+ ++.|
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 258 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD 258 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCC
Confidence 9999999999999999999999999964 679999988876 5667
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEE
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 530 (597)
|.|++||+++ +..+..+.+|...|.++.| ....+++++.||.|++||+++++.+..+.+|...+.++.+ ++.++++
T Consensus 259 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 334 (445)
T 2ovr_B 259 FMVKVWDPET-ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS 334 (445)
T ss_dssp SCEEEEEGGG-TEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE
T ss_pred CEEEEEECCC-CcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE
Confidence 7788888776 6667777778888888887 3367888888888888888888888888877777766655 5678888
Q ss_pred EeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 531 GSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
|+.||.|++||+.+++.+..+... ..|...|++++|+ +.+|++|+.||.|+|||+.+
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~--------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGP--------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECST--------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EeCCCeEEEEECCCCcEEEEEccC--------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 888888888888877776655431 1368899999996 67999999999999999753
No 89
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=8.7e-29 Score=263.77 Aligned_cols=252 Identities=13% Similarity=0.123 Sum_probs=213.9
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCc-eeEEEEecC-CCCEEEEeeCCCcE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKY-TKNLIASSDYDGIV 403 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~~~~-~~~~l~s~~~dg~i 403 (597)
..|.+.|.+++|+|+|++|++++ ++.|.||++.++... ........+|... |++++|+|. ++.+|++|+.||.|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 46889999999999999999998 889999999854111 0123344568888 999999983 47899999999999
Q ss_pred EEEeCCCC--------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCce
Q 042883 404 TIWDVTTS--------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV 475 (597)
Q Consensus 404 ~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 475 (597)
++||+.++ .....+..|...|.+++|+| ++.++++++.+.. ..+.|++|| . +..+..+.+|...|
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~---~~~~v~~~d--~-~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRD---NFGVFISWD--S-GNSLGEVSGHSQRI 163 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSS---CSEEEEETT--T-CCEEEECCSCSSCE
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCC---CccEEEEEE--C-CCcceeeecCCccE
Confidence 99999754 66777888999999999999 8888888876532 235688888 3 56788888999999
Q ss_pred EEEEecCCC--eEEEeeCCCcEEEEEcCCCcceeeeeCCCC---ceeEEEEeec-CCEEEEEeCCCcEEEEEccCCcccc
Q 042883 476 SYVKFLSNN--ELASASTDSSLRLWDVKENLPLHTFRGHTN---EKNFVGLTVN-NEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 476 ~~v~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
.+++|+|++ .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ |.+|++++.||.|++||+.+++.+.
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 999999993 799999999999999999999999999999 9999999999 9999999999999999999988877
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+... ...|...|.+++|+ ++.+|++++.||.|++||+.
T Consensus 244 ~~~~~-------~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 244 YIEDD-------QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp ECCBT-------TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred Eeccc-------ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 66210 01358899999999 99999999999999999975
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.1e-29 Score=244.97 Aligned_cols=232 Identities=10% Similarity=0.146 Sum_probs=197.9
Q ss_pred ccCCCCcEEEEEEcCCCC-EEEEeeCCCcEEEEec-ccCccCCccCCCCceEec--CCCceeEEEEecCCCCEEEEeeCC
Q 042883 325 LFHAANIISSIEFDRDDE-LFASAGVSRRIKIFEF-SSVVNEPRDVHYPMVEMP--TRSKLSCLSWNKYTKNLIASSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~-~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~~l~s~~~d 400 (597)
..+|...|++++|+|++. +|++|+.||.|++|++ .++ ....... |...|.+++|+| +..|++++.|
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d 121 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------SFQALTNNEANLGICRICKYG--DDKLIAASWD 121 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS--------SEEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC--------ceEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence 347999999999999999 9999999999999999 765 2234445 889999999998 7899999999
Q ss_pred CcEEEEeCCC---------CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC-CCcc-eeeec
Q 042883 401 GIVTIWDVTT---------SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN-ISQP-LHVFN 469 (597)
Q Consensus 401 g~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~-~~~~-~~~~~ 469 (597)
|.|++||+.+ ++.+..+. |...|.+++|+| ++ +++++.| +.|++||++. .... .....
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~ 190 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNN-------SQVQWFRLPLCEDDNGTIEES 190 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS-SE--EEEEEST-------TEEEEEESSCCTTCCCEEEEC
T ss_pred CeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC-Cc--EEEEeCC-------CeEEEEECCccccccceeeec
Confidence 9999999987 66666665 888999999998 44 7777754 4599999986 4333 33445
Q ss_pred cCCCceEEEEecC-C-CeEEEeeCCCcEEEEEcCCC------cceeeeeCCCC---------ceeEEEEeecCCEEEEEe
Q 042883 470 GHKKAVSYVKFLS-N-NELASASTDSSLRLWDVKEN------LPLHTFRGHTN---------EKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 470 ~~~~~v~~v~~~~-~-~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~---------~v~~v~~s~~g~~l~~~~ 532 (597)
.|...+.+++|+| + ..+++++.||.|++||+... +....+..|.. .|.+++|+|+|++|++++
T Consensus 191 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence 6888999999999 7 88999999999999999887 78888888765 999999999999999999
Q ss_pred CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCccc
Q 042883 533 ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGA 589 (597)
Q Consensus 533 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~ 589 (597)
.||.|++||+.+++.+..+.. +|...|++++ |++.+|++|+.||.
T Consensus 271 ~dg~i~vwd~~~~~~~~~~~~----------~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 271 SDGIISCWNLQTRKKIKNFAK----------FNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp TTSCEEEEETTTTEEEEECCC----------CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred CCceEEEEcCccHhHhhhhhc----------ccCCCceEec--CCCCeEEEEecCCc
Confidence 999999999999988766542 2388999999 99999999999998
No 91
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-28 Score=250.81 Aligned_cols=240 Identities=16% Similarity=0.136 Sum_probs=195.5
Q ss_pred cCCCCcEEEEEEcCCCCEE-EEeeCCCcEEEEecc--cCccCCccCCCCceE---ecCCCceeEEEEecCCCCEEEEeeC
Q 042883 326 FHAANIISSIEFDRDDELF-ASAGVSRRIKIFEFS--SVVNEPRDVHYPMVE---MPTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l-~t~~~d~~v~iw~~~--~~~~~~~~~~~~~~~---~~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
.+|.+.|++++|+|++++| ++|+.||.|+||++. ++ ..... ..+...|++++|+| ++.+|++|+.
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~ 169 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAE-DDTTVIIADK 169 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECT-TSSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcC-CCCEEEEEeC
Confidence 4688899999999999996 899999999999998 54 12222 25678999999999 7899999999
Q ss_pred CCcEEEEeCCCCeeee----EEeeccceeEEEEeCCCC---CceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccC
Q 042883 400 DGIVTIWDVTTSQSVM----EYEEHEKRAWSVDFSCTE---PSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGH 471 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~ 471 (597)
+|.|++|++.++.... .+.+|...|++++|+| + +.+|++++.|+. |++||+++ +..+.. +.+|
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~-------i~vwd~~~-~~~~~~~~~~h 240 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEH-------IKISHYPQ-CFIVDKWLFGH 240 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSC-------EEEEEESC-TTCEEEECCCC
T ss_pred CCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCc-------EEEEECCC-CceeeeeecCC
Confidence 9999999998876554 7788999999999999 6 889999986555 99999987 556655 5689
Q ss_pred CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeC-------------------------CCCceeEEEEeecC
Q 042883 472 KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRG-------------------------HTNEKNFVGLTVNN 525 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~-------------------------~~~~v~~v~~s~~g 525 (597)
...|.+++|+ + .+|++++.|+.|++||+++++.+..+.. ....+..++|+|+|
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 9999999999 8 8899999999999999999998887763 23568899999999
Q ss_pred CEEEEEe-CCCcEEEEEc--cCC---ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC------cccEEEE
Q 042883 526 EYIACGS-ETNEVFVYHK--AIS---KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR------KGAIKVL 593 (597)
Q Consensus 526 ~~l~~~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~------dg~v~iw 593 (597)
++|++++ .|+.|+||++ ..+ ..+..+.. ...|.+++|+|++.++++++. ++.|.||
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~------------~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITF------------PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC------------SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEecc------------CCceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 9999998 8999999999 554 33333332 367999999996544444443 5568999
Q ss_pred Eec
Q 042883 594 VLA 596 (597)
Q Consensus 594 d~~ 596 (597)
.++
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 92
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.2e-28 Score=242.35 Aligned_cols=201 Identities=15% Similarity=0.209 Sum_probs=171.6
Q ss_pred eEecCCCceeEEEE-----ecCCCCEEEEeeCCCcEEEEeCCCC-------eeeeEEeeccceeEEEEeCCCCCceEEee
Q 042883 373 VEMPTRSKLSCLSW-----NKYTKNLIASSDYDGIVTIWDVTTS-------QSVMEYEEHEKRAWSVDFSCTEPSMLVSG 440 (597)
Q Consensus 373 ~~~~~~~~i~~v~~-----~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 440 (597)
...+|...|++++| ++.++.+|++|+.|+.|++||+.++ .....+.+|...|++++|+| ++.+++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~ 94 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISS 94 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEE
Confidence 44578999999999 6547889999999999999998643 45667889999999999999 88999999
Q ss_pred cCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeee---CCCCce
Q 042883 441 SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFR---GHTNEK 516 (597)
Q Consensus 441 ~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v 516 (597)
+.|+. |++||+++ +..+..+.+|...|.+++|+|+ .+|++++.|+.|++||+... ...... +|...|
T Consensus 95 s~D~~-------v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 95 SWDKT-------LRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWV 165 (343)
T ss_dssp ETTSE-------EEEEETTS-SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCE
T ss_pred cCCCc-------EEEEECCC-CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCcee
Confidence 86554 99999998 7788889999999999999999 78999999999999999843 333333 688899
Q ss_pred eEEEEeecC----------CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 517 NFVGLTVNN----------EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 517 ~~v~~s~~g----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
.+++|+|++ .+|++++.||.|++||. .......+. .|...|++++|+|+|++|++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-----------~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-----------AHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-----------CCSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-----------CccccceEEEECCCCCEEEEEcC
Confidence 999999987 79999999999999994 333333332 36889999999999999999999
Q ss_pred cccEEEEEe
Q 042883 587 KGAIKVLVL 595 (597)
Q Consensus 587 dg~v~iwd~ 595 (597)
||.|+|||+
T Consensus 234 dg~v~iwd~ 242 (343)
T 2xzm_R 234 DKKLLIWDI 242 (343)
T ss_dssp TCEEEEEES
T ss_pred CCeEEEEEC
Confidence 999999998
No 93
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=7.1e-29 Score=273.49 Aligned_cols=244 Identities=18% Similarity=0.285 Sum_probs=210.2
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|.++|++++|+|++++|++|+.||.|++||+.++ .......+|...|++++|+| ++.+|++|+.||.|++
T Consensus 52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKL 123 (814)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEE
Confidence 469999999999999999999999999999999876 23334456889999999999 7889999999999999
Q ss_pred EeCCCC-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-CCCceEEEEecC-
Q 042883 406 WDVTTS-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-HKKAVSYVKFLS- 482 (597)
Q Consensus 406 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~v~~~~- 482 (597)
||+.++ .....+.+|...|.+++|+|.++..+++++.|+ .|++||+.. +.....+.. +...+..++|+|
T Consensus 124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-------TVKVWSLGQ-STPNFTLTTGQERGVNYVDYYPL 195 (814)
T ss_dssp EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-------EEEEEETTC-SSCSEEEECCCTTCCCEEEECCS
T ss_pred EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-------eEEEEECCC-CcceeEEecCCCCCEEEEEEEEC
Confidence 999886 677888899999999999996778899988655 499999987 445555544 448899999998
Q ss_pred -C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 483 -N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 483 -~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
+ ..|++++.||.|++||+.+++.+..+.+|...|.+++|+|+|.+|++++.||.|++||+.+++.+..+..
T Consensus 196 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~------- 268 (814)
T 3mkq_A 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV------- 268 (814)
T ss_dssp TTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC-------
T ss_pred CCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-------
Confidence 6 7899999999999999999999999999999999999999999999999999999999999888776653
Q ss_pred cCcCCCcceEEEEEccCCCe-EEEecCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSPT-MLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~-l~s~~~dg~v~iwd~~ 596 (597)
|...|++++|+|+|.. +++++.|+.+.+|++.
T Consensus 269 ----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 269 ----GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp ----SSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred ----CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 3678999999999874 2455556678888864
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4e-29 Score=254.08 Aligned_cols=206 Identities=15% Similarity=0.240 Sum_probs=172.2
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee--eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCC
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV--MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d 450 (597)
...+|...|++|+|+|.++++||+|+.||.|+|||+.++... ..+.+|.+.|++|+|+|.++.+|++++.|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~----- 188 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT----- 188 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC-----
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE-----
Confidence 344677889999999977889999999999999999876543 4456899999999999978899999996655
Q ss_pred CeEEEEEccCCCcceeeec---cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCC
Q 042883 451 HHIHYYDLRNISQPLHVFN---GHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE 526 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~ 526 (597)
|++||++. . ....+. .+...+.+++|+|+ .+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++.
T Consensus 189 --v~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 189 --TRLQDFKG-N-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp --EEEEETTS-C-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCS
T ss_pred --EEEeeccC-C-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCc
Confidence 99999985 3 333332 23456789999999 789999999999999987 567788899999999999999976
Q ss_pred -EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 527 -YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 527 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|++|+.|+.|+|||+++.+....+... ..|...|++++|+|+|.+|++|+.||.|+|||+.
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~--------~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYS--------LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBC--------CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred eEEEEecCcceeeEEecccccccceEEEe--------eeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 7889999999999999887655443221 2468899999999999999999999999999975
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.9e-30 Score=256.27 Aligned_cols=247 Identities=12% Similarity=0.126 Sum_probs=170.0
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEec-------CCCCEEEEeeCC
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNK-------YTKNLIASSDYD 400 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~-------~~~~~l~s~~~d 400 (597)
|...+....+.+++.+|++++.|++|+|||+..+..... .......+|...|++|+|+| .++.+|++|+.|
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~--~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ--HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEE--EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee--eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 344444444555677899999999999999887611100 00112346899999999987 257899999999
Q ss_pred CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce---------------
Q 042883 401 GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL--------------- 465 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--------------- 465 (597)
++|+|||+.++..+..+.+|..+|.+++|+|+++.+|++++.|+. |++||++++....
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~-------v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN-------IRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE-------EEEEETTCCC----------CSCCCSEE
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE-------EEEEECCCCcccccccccCCcccceEEe
Confidence 999999999888888888999999999999966678999986554 9999998632111
Q ss_pred ---------eeeccCCCceEEEEec-CC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEE---------------
Q 042883 466 ---------HVFNGHKKAVSYVKFL-SN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFV--------------- 519 (597)
Q Consensus 466 ---------~~~~~~~~~v~~v~~~-~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v--------------- 519 (597)
....+|...+.++.|+ ++ ..|++++.|+++++||+..++....+..|...+..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL 318 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence 1123577788999987 56 789999999999999998877666655554433333
Q ss_pred ---EEee--cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 520 ---GLTV--NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 520 ---~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|+| ++.++++|+.||.|+|||+.++....... .|..+|++++|+|+|++||+++.+| +.+|.
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-----------~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-----------QLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-----------ECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-----------CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 2333 34467778899999999999888766543 2477999999999999999998777 56666
Q ss_pred e
Q 042883 595 L 595 (597)
Q Consensus 595 ~ 595 (597)
+
T Consensus 387 L 387 (393)
T 4gq1_A 387 L 387 (393)
T ss_dssp E
T ss_pred E
Confidence 5
No 96
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.4e-28 Score=243.35 Aligned_cols=205 Identities=15% Similarity=0.178 Sum_probs=168.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEe--eCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 327 HAANIISSIEFDRDDELFASA--GVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~--~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
.+...+.+++|+|||++++++ +.|++|+|||+.++ .......|...|.+|+|+| ++.++++++. +.+.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--------~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~-~~~~ 200 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--------TEKFEIETRGEVKDLHFST-DGKVVAYITG-SSLE 200 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--------EEEEEEECSSCCCEEEECT-TSSEEEEECS-SCEE
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--------cEEEEeCCCCceEEEEEcc-CCceEEeccc-eeEE
Confidence 456679999999999998654 46899999999876 3444556788899999999 7899999985 4566
Q ss_pred EEeCCCCeeee--EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc---ceeeeccCCCceEEEE
Q 042883 405 IWDVTTSQSVM--EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ---PLHVFNGHKKAVSYVK 479 (597)
Q Consensus 405 iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~v~ 479 (597)
+|+..++..+. ...+|...|.+++|+| ++.++++++.|+. ....+++||+..... ....+.+|...|++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 201 VISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKG---KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD 276 (365)
T ss_dssp EEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSS---CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE
T ss_pred EEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCc---ceeEEeecccccceecceeeeeecCCCCCeEeEE
Confidence 77766666543 3456888999999999 8888988886653 233588899875322 1345678999999999
Q ss_pred ecCC-CeEEEeeCCCcEEEEEcCCCcceeee-eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCC
Q 042883 480 FLSN-NELASASTDSSLRLWDVKENLPLHTF-RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 545 (597)
|+|+ .+|++|+.|++|+|||+.+++++..+ .+|...|++++|+|||++|++|+.|++|+|||+...
T Consensus 277 ~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 277 VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999 78999999999999999999999885 689999999999999999999999999999998654
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-29 Score=244.37 Aligned_cols=231 Identities=8% Similarity=0.033 Sum_probs=180.1
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC------
Q 042883 336 EFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT------ 409 (597)
Q Consensus 336 ~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~------ 409 (597)
.+.+++.+|++|+.||.|++||+.++ ....... ...|.++.|+| . +++|+.|+.|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~-~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDS--------KTITTIT-TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSS--------SCEEEEE-EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCC--------cEEEEEe-cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEe
Confidence 34457889999999999999999876 2222221 45677888888 3 9999999999999765
Q ss_pred ---CCeeeeEEe-eccceeEEEEeCCC-CCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-cCCCceEEEEecCC
Q 042883 410 ---TSQSVMEYE-EHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKKAVSYVKFLSN 483 (597)
Q Consensus 410 ---~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~ 483 (597)
++..+..+. +|...|.+++|+|. ++.++++++.|+. |++||+++ +..+.... .|...+.+++|+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~-------i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~pd 181 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGT-------IGFQSYED-DSQYIVHSAKSDVEYSSGVLHKD 181 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCC-------EEEEESSS-SCEEEEECCCSSCCCCEEEECTT
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCc-------EEEEECCC-CcEEEEEecCCCCceEEEEECCC
Confidence 444344443 56688999999982 5678888886555 99999997 55555553 45668999999999
Q ss_pred -CeEEEeeCCCcEEEEEcCCCcce-eeeeC-CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCC
Q 042883 484 -NELASASTDSSLRLWDVKENLPL-HTFRG-HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHV 560 (597)
Q Consensus 484 -~~l~s~~~d~~v~iwd~~~~~~~-~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 560 (597)
.+|++|+.||.|++||+++++.+ ..+.+ |...|++++|+|+|.+|++++ |+.|++||+++++.+..+..-.
T Consensus 182 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----- 255 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----- 255 (343)
T ss_dssp SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB-----
T ss_pred CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc-----
Confidence 77889999999999999999887 78887 999999999999999999999 5599999999887765443210
Q ss_pred cCcCCCcce--EEEEEccCCCeEEEecC-cccEEEEEec
Q 042883 561 DDDMGSYFI--SAVCWKSDSPTMLTANR-KGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i--~~v~~~~~~~~l~s~~~-dg~v~iwd~~ 596 (597)
.|...+ .+++|+|+|++|++++. |+.|+||+++
T Consensus 256 ---~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 256 ---IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp ---C-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---cccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 012333 46999999999999888 9999999974
No 98
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.1e-28 Score=242.19 Aligned_cols=209 Identities=20% Similarity=0.255 Sum_probs=183.7
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe-----eeeEEeeccceeEEEEeCCCCCceEEeecCCCcc--
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-----SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-- 446 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-- 446 (597)
..+|.+.|++|+|+|+++++|++|+.||+|+|||+.++. ....+.+|...|.+++|+| ++.++++++.|+.+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRL 112 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceE
Confidence 457999999999999668899999999999999987643 4667889999999999999 89999999999987
Q ss_pred ---------------------------------cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC---CeEEEee
Q 042883 447 ---------------------------------GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN---NELASAS 490 (597)
Q Consensus 447 ---------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~---~~l~s~~ 490 (597)
++.|+.+++||+...........+|...+..++|+++ ..+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 6789999999988644455556789999999999887 4578999
Q ss_pred CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceE
Q 042883 491 TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFIS 570 (597)
Q Consensus 491 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 570 (597)
.|+.|++||+++++.+..+.+|.+.|++++|+|+|++|++|+.||.|++||+.+.+.+..+.. ...|.
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~------------~~~v~ 260 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG------------GDIIN 260 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------------SSCEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC------------CceEE
Confidence 999999999999999999999999999999999999999999999999999999888776652 56799
Q ss_pred EEEEccCCCeEEEecCcccEEEEEec
Q 042883 571 AVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 571 ~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.++|+|++. +++++.|+.|+|||+.
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLE 285 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETT
T ss_pred eeecCCCCc-eeeccCCCEEEEEECC
Confidence 999999875 5566679999999975
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.6e-29 Score=291.39 Aligned_cols=239 Identities=17% Similarity=0.275 Sum_probs=212.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|.+.|++++|+|+|++|++++.||.|++|++.++ .......|...|.+++|+| +..+++++.||.|++
T Consensus 1000 ~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG--------DYVFLQAHQETVKDFRLLQ--DSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT--------EEECCBCCSSCEEEEEECS--SSEEEEEESSSEEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--------ceEEEecCCCcEEEEEEcC--CCcEEEEECCCcEEE
Confidence 469999999999999999999999999999999876 2223446788999999998 457889999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-C
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~ 484 (597)
||+.+++....+.+|...|++++|+| ++.++++++.|+. |++||+.+ +..+..+.+|.+.|++++|+|+ .
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~-------v~iwd~~~-~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKT-------AKIWSFDL-LSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSC-------CCEECSSS-SSCSBCCCCCSSCEEEEEECSSSS
T ss_pred EECCCCceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCc-------EEEEECCC-cceeeeeccCCCcEEEEEECCCCC
Confidence 99999999999999999999999999 8889999986555 99999987 7788889999999999999999 7
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeee---------eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTF---------RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~---------~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
+|++++.||.|++||+.+++.+..+ .+|.+.|++++|+|+|.+|++++ |.|++||+.+++.+..+..
T Consensus 1141 ~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~-- 1216 (1249)
T 3sfz_A 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT-- 1216 (1249)
T ss_dssp EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC--
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec--
Confidence 8999999999999999998887765 57889999999999999999886 8999999999988765542
Q ss_pred CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|...|++++|+|+|.+|++++.||.|++|++.
T Consensus 1217 ---------~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1217 ---------NGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp ---------SSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred ---------cCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 47789999999999999999999999999974
No 100
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.7e-29 Score=272.17 Aligned_cols=160 Identities=11% Similarity=0.142 Sum_probs=126.9
Q ss_pred cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce--eee----c-----cCCCceEEEEecCC-CeEEE
Q 042883 421 EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL--HVF----N-----GHKKAVSYVKFLSN-NELAS 488 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--~~~----~-----~~~~~v~~v~~~~~-~~l~s 488 (597)
...+.+++|+| ++.++++|+.|+ +|++||+..+ ... ..+ . +|...|.+|+|+|+ .+|++
T Consensus 435 ~~~v~sv~~sp-dg~~laSgs~Dg-------tVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs 505 (902)
T 2oaj_A 435 VRTKRQKLPAE-YGTAFITGHSNG-------SVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAV 505 (902)
T ss_dssp BCCCCCCCCCS-EEEEEEEEETTS-------EEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE
T ss_pred cCCCCcccccc-cCcEEEEecCCC-------cEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEE
Confidence 33444556677 788999998655 4999999873 221 111 1 78899999999999 88999
Q ss_pred eeCCCcEEEEEcCCCc---------------------------------------------ceeeeeCCCCceeEEEEee
Q 042883 489 ASTDSSLRLWDVKENL---------------------------------------------PLHTFRGHTNEKNFVGLTV 523 (597)
Q Consensus 489 ~~~d~~v~iwd~~~~~---------------------------------------------~~~~~~~~~~~v~~v~~s~ 523 (597)
|+.||+|+|||+.+++ ++..+.+|.+.|++++|+|
T Consensus 506 gs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp 585 (902)
T 2oaj_A 506 SIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN 585 (902)
T ss_dssp EETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB
T ss_pred EecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC
Confidence 9999999999997652 3667788999999999999
Q ss_pred cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc-----cCC---CeEEEecCcccEEEEEe
Q 042883 524 NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK-----SDS---PTMLTANRKGAIKVLVL 595 (597)
Q Consensus 524 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~-----~~~---~~l~s~~~dg~v~iwd~ 595 (597)
|| +||+|+.|+.|+|||+.++..+....... ...+|...|++|+|+ ||| .+|++|+.||+|++||+
T Consensus 586 dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~-----~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 586 IG-FVGIAYAAGSLMLIDRRGPAIIYMENIRE-----ISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----TCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhH-----hccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 99 99999999999999988776543211100 001478999999999 886 89999999999999998
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=3.9e-28 Score=245.66 Aligned_cols=237 Identities=17% Similarity=0.318 Sum_probs=198.2
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
.++.|+|+++ ++|++|. |++|+|||..++. .........|...|++|+|+| ++++|++|+.||.|+|||+.+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~-----~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTT
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCC-----EEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCC
Confidence 4667999975 4777775 9999999998871 111112235677899999999 799999999999999999999
Q ss_pred CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEe
Q 042883 411 SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASA 489 (597)
Q Consensus 411 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~ 489 (597)
++.+..+.+|...+.+++++ +.++++|+.|+. +++||.+.....+..+.+|...+..+.|+|+ ..++++
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~-------i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~ 248 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGH-------IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE---TTEEEEEETTSE-------EEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCc-------eeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence 99999999999999999885 478999886554 9999999867778888999999999999999 889999
Q ss_pred eCCCcEEEEEcCCCc----ceeeeeCCCCceeEEEEeecCC-EEEE--EeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 490 STDSSLRLWDVKENL----PLHTFRGHTNEKNFVGLTVNNE-YIAC--GSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 490 ~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~v~~s~~g~-~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
+.|+.|++||..+++ .+.....|...|.+++|+|++. ++++ |+.|+.|++||+.+++....+..
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~--------- 319 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--------- 319 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---------
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc---------
Confidence 999999999998765 4566778999999999999754 5554 45799999999999988877653
Q ss_pred cCCCcceEEEEEccCCCeEEEec--CcccEEEEEecC
Q 042883 563 DMGSYFISAVCWKSDSPTMLTAN--RKGAIKVLVLAA 597 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~--~dg~v~iwd~~~ 597 (597)
...+.++.|+|++..+++++ .||.|+|||+.+
T Consensus 320 ---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 320 ---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp ---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred ---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 56799999999999988754 799999999753
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=4e-29 Score=242.46 Aligned_cols=204 Identities=19% Similarity=0.238 Sum_probs=168.3
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe--eeeEEeeccceeEEEEeCCC-CCceEEeecCCCcccCCC
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ--SVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~d 450 (597)
..+|...|++++|+| ++++|++|+.|+.|+|||+.++. .+..+.+|...|++++|+|. ++.+|++++.|+.
T Consensus 9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~----- 82 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK----- 82 (316)
T ss_dssp -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC-----
T ss_pred cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE-----
Confidence 346889999999999 78999999999999999998764 46778899999999999863 4789999996655
Q ss_pred CeEEEEEccCCC-cceeeeccCCCceEEEEecCC---CeEEEeeCCCcEEEEEcCCCcc---eeeeeCCCCceeEEEEee
Q 042883 451 HHIHYYDLRNIS-QPLHVFNGHKKAVSYVKFLSN---NELASASTDSSLRLWDVKENLP---LHTFRGHTNEKNFVGLTV 523 (597)
Q Consensus 451 ~~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~---~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~v~~s~ 523 (597)
|++||++++. ..+..+.+|...|.+++|+|+ .+|++|+.|+.|++||++.+.. ...+.+|...+.+++|+|
T Consensus 83 --v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 83 --VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp --EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred --EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 9999998732 355677889999999999997 4699999999999999987532 355668899999999999
Q ss_pred c-----------------CCEEEEEeCCCcEEEEEccCCc---cccccccCCCCCCCcCcCCCcceEEEEEccCC----C
Q 042883 524 N-----------------NEYIACGSETNEVFVYHKAISK---PAASHRFGSDADHVDDDMGSYFISAVCWKSDS----P 579 (597)
Q Consensus 524 ~-----------------g~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~----~ 579 (597)
+ +.+|++|+.|+.|++||+..+. .+..+ .+|...|++++|+|++ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----------~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----------EAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----------BCCSSCEEEEECCCCSSCSCC
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----------ccCCCceEEEEecCCCCCCCc
Confidence 7 4789999999999999997542 22222 2468899999999986 7
Q ss_pred eEEEecCcccEEEEEec
Q 042883 580 TMLTANRKGAIKVLVLA 596 (597)
Q Consensus 580 ~l~s~~~dg~v~iwd~~ 596 (597)
+|++|+.||+|+||+++
T Consensus 230 ~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCD 246 (316)
T ss_dssp EEEEEETTCEEEEEECS
T ss_pred eEEEEcCCCeEEEEEcc
Confidence 89999999999999975
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=239.76 Aligned_cols=240 Identities=15% Similarity=0.250 Sum_probs=174.5
Q ss_pred CCCCcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCC--CCEEEEeeCCCcE
Q 042883 327 HAANIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYT--KNLIASSDYDGIV 403 (597)
Q Consensus 327 ~~~~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~--~~~l~s~~~dg~i 403 (597)
+|...|.+++|+| ++.+|++++.||.|++||+.++ .......+...+.++.|+|.+ +.++++|+.||.|
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV 168 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeE
Confidence 5999999999999 7789999999999999999876 344455577889999999843 3499999999999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee---------------
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF--------------- 468 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~--------------- 468 (597)
++||+.++..+..+.+|...|.+++|+|++..++++++.|+. |++||++.....+..+
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR-------VKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp EEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-------EEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred EEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-------EEEEECCCCCcccccccccccccceeecccc
Confidence 999999999999999999999999999944446888886555 9999998754444444
Q ss_pred ccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc-------------------------------------------
Q 042883 469 NGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL------------------------------------------- 504 (597)
Q Consensus 469 ~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~------------------------------------------- 504 (597)
.+|...|.+++|+|+ .+|++++.||.|++||+.+++
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 568899999999999 789999999999999987643
Q ss_pred ----ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc-CCC
Q 042883 505 ----PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS-DSP 579 (597)
Q Consensus 505 ----~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~ 579 (597)
.+..+.+|...|++++|+|+|.+|++|+.||.|++||+.+++++...... -....+++ ...
T Consensus 322 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 387 (408)
T 4a11_B 322 YSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET--------------TTKSQLNPAFED 387 (408)
T ss_dssp TTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------
T ss_pred cCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce--------------Eeccccccccce
Confidence 34556779999999999999999999999999999999998876554321 11123333 333
Q ss_pred eEEEecCcccEEEEEe
Q 042883 580 TMLTANRKGAIKVLVL 595 (597)
Q Consensus 580 ~l~s~~~dg~v~iwd~ 595 (597)
.+.+++.|+.+++|+.
T Consensus 388 ~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 388 AWSSSDEEGGTSAWSH 403 (408)
T ss_dssp ----------------
T ss_pred eecccCccCceeecCC
Confidence 4556778999999985
No 104
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=1e-27 Score=255.52 Aligned_cols=252 Identities=13% Similarity=0.167 Sum_probs=210.5
Q ss_pred ccCCCCc-EEEEEEcC--CCCEEEEeeCCCcEEEEecccCccCCc-cCCCCceEecCCCceeEEEEecCCCCEEEEeeCC
Q 042883 325 LFHAANI-ISSIEFDR--DDELFASAGVSRRIKIFEFSSVVNEPR-DVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD 400 (597)
Q Consensus 325 ~~~~~~~-v~~i~~~~--~~~~l~t~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d 400 (597)
+.+|.+. |++++|+| ++++|++|+.||.|++||+.++..... ..........|...|.+++|+| ++.+|++++.+
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~ 137 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEG 137 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECC
T ss_pred EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccC
Confidence 4579999 99999999 999999999999999999964300000 0012223345788999999999 78899999887
Q ss_pred ----CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCC---
Q 042883 401 ----GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK--- 473 (597)
Q Consensus 401 ----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--- 473 (597)
+.|++|| .+..+..+.+|...|++++|+|++..++++++.|+ .|++||+.. ...+..+.+|..
T Consensus 138 ~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------~v~vwd~~~-~~~~~~~~~~~~~~~ 207 (615)
T 1pgu_A 138 RDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG-------SVVFYQGPP-FKFSASDRTHHKQGS 207 (615)
T ss_dssp SSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTT-------EEEEEETTT-BEEEEEECSSSCTTC
T ss_pred CCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCC-------cEEEEeCCC-cceeeeecccCCCCc
Confidence 6888888 56788888999999999999994444889988655 499999987 778888889998
Q ss_pred ceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeee-e---CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 474 AVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTF-R---GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 474 ~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~-~---~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
.|.+++|+|+ .+|++++.||.|++||+++++.+..+ . +|...|.+++|+ ++.+|++++.||.|++||+.+++.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 9999999998 46889999999999999999999998 6 899999999999 999999999999999999999888
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+..+.... ..+...+.++.|+ ++.++++++.||.|++||+.
T Consensus 287 ~~~~~~~~-------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 287 VQKWTLDK-------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EEEEECCT-------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred EEEEcCCC-------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECC
Confidence 77665421 1124678888886 88999999999999999975
No 105
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=5e-27 Score=241.11 Aligned_cols=244 Identities=19% Similarity=0.325 Sum_probs=199.3
Q ss_pred cCCCCcEEEEEEc--CCCCEEEEeeCCCcEEEEecccCccCCccCC----------------CCceEecCCCceeEEEEe
Q 042883 326 FHAANIISSIEFD--RDDELFASAGVSRRIKIFEFSSVVNEPRDVH----------------YPMVEMPTRSKLSCLSWN 387 (597)
Q Consensus 326 ~~~~~~v~~i~~~--~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~----------------~~~~~~~~~~~i~~v~~~ 387 (597)
.+|.+.|.+++|+ +++.++++|+.||.|++||+.+......... ......+|...+.++.
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 277 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-- 277 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--
Confidence 4699999999999 5778999999999999999987621111000 0123445777787774
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee
Q 042883 388 KYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 388 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~ 467 (597)
+ +++++++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+. |++||+++ +..+..
T Consensus 278 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~-------i~vwd~~~-~~~~~~ 347 (464)
T 3v7d_B 278 G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTT-------IRIWDLEN-GELMYT 347 (464)
T ss_dssp E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSC-------EEEEETTT-TEEEEE
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCc-------EEEEECCC-CcEEEE
Confidence 4 578999999999999999999999999999999999999999 8889999986555 99999997 788899
Q ss_pred eccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 468 FNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 468 ~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
+.+|...|.++.|++ .+|++++.||.|++||+.++....... +...+..++|++++.+|++|+ ||.|++||+.+++.
T Consensus 348 ~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 348 LQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp ECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred EeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 999999999999974 789999999999999999887666654 566778899999999999998 89999999999998
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+.....+ |...|++++|+ ++.++++++.||.+.+|-+
T Consensus 425 ~~~~~~~----------~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 425 VHANILK----------DADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EESCTTT----------TCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred Eehhhcc----------CCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 8764432 48899999997 3445556667776665544
No 106
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=2e-27 Score=256.44 Aligned_cols=203 Identities=21% Similarity=0.281 Sum_probs=177.2
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC-----eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccC
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS-----QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGS 448 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~ 448 (597)
..+|...|++|+|+|+++++|++|+.||.|++||+.+. .....+.+|...|.+++|+| ++.++++|+.|+.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~--- 453 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGE--- 453 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE---
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCc---
Confidence 45789999999999977789999999999999998753 34567889999999999999 8899999986555
Q ss_pred CCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeee---eCCCCceeEEEEeec
Q 042883 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTF---RGHTNEKNFVGLTVN 524 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~v~~s~~ 524 (597)
|++||+.+ +..+..+.+|...|.+++|+|+ ..|++++.|++|++||+......... .+|...|.+++|+|+
T Consensus 454 ----v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 454 ----LRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp ----EEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred ----EEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 99999997 7778889999999999999999 78999999999999998754332222 468889999999998
Q ss_pred C--CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 525 N--EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 525 g--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+ .+|++|+.|+.|++||+.+++....+. +|...|++++|+|+|.+|++|+.||.|+|||+.
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-----------~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLA-----------GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEc-----------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 6 689999999999999999887766553 468899999999999999999999999999985
No 107
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=6e-27 Score=219.89 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=165.0
Q ss_pred cEEEEEEcCCCC---EEEEeeCCCcEEEEecccCccCC------ccCCCCceEec----------------CCCceeEEE
Q 042883 331 IISSIEFDRDDE---LFASAGVSRRIKIFEFSSVVNEP------RDVHYPMVEMP----------------TRSKLSCLS 385 (597)
Q Consensus 331 ~v~~i~~~~~~~---~l~t~~~d~~v~iw~~~~~~~~~------~~~~~~~~~~~----------------~~~~i~~v~ 385 (597)
.|.++-|-..|- .+++++ ...|++|+.... ... .....+..... +...|.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 456666655443 566665 678999998775 110 01111111111 223688888
Q ss_pred EecCC----CCEEEEeeC--------------------CCcEEEEeC-CCCeeeeEEeeccceeEEEEeCC--CCCceEE
Q 042883 386 WNKYT----KNLIASSDY--------------------DGIVTIWDV-TTSQSVMEYEEHEKRAWSVDFSC--TEPSMLV 438 (597)
Q Consensus 386 ~~~~~----~~~l~s~~~--------------------dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~ 438 (597)
++| + +..+++++. |+.|++|++ .+++.+..+.+|...+..++|+| .++.+|+
T Consensus 119 ~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 119 CSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp C-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred ECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence 888 5 566666553 677777777 34666666667777777766665 2457788
Q ss_pred eecCCCcccCCCCeEEEEEccCCCcceeeeccCC---CceEEEEecCCCe-E------------EEeeCCCcEEEEEcCC
Q 042883 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK---KAVSYVKFLSNNE-L------------ASASTDSSLRLWDVKE 502 (597)
Q Consensus 439 s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~v~~v~~~~~~~-l------------~s~~~d~~v~iwd~~~ 502 (597)
+++.|+ +|+|||+.+ ++.+.++.+|. ..+.+++|+|++. + ++|+.|++|++||..+
T Consensus 198 SgS~D~-------TIkIWDl~T-Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 198 GTTIMN-------NIVIWNLKT-GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp EEETTS-------EEEEEETTT-CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred EecCCC-------cEEEEECCC-CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 888554 599999998 78888887654 4677889999954 3 5688999999999999
Q ss_pred Ccceeee-----eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcc-eEEEEEcc
Q 042883 503 NLPLHTF-----RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYF-ISAVCWKS 576 (597)
Q Consensus 503 ~~~~~~~-----~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~v~~~~ 576 (597)
++.+..+ .+|...+. ..+.+|.++++|+.|++|+|||+.+++.+.++. +|... +..++|+|
T Consensus 270 gk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-----------gH~~~vvs~vafSP 336 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-----------PVSDQHWSFVKWSG 336 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-----------CC--CCCCEEEECS
T ss_pred CEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-----------CCCCCeEEEEEECC
Confidence 9877665 35655543 444458899999999999999999999988875 23444 44689999
Q ss_pred CCCeEEEecCcccEEEEEec
Q 042883 577 DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 577 ~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|++|++|+.|++|+|||+.
T Consensus 337 DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 337 TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp SSSEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEECCCcEEEecCC
Confidence 99999999999999999974
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-27 Score=237.31 Aligned_cols=234 Identities=10% Similarity=0.142 Sum_probs=178.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCC-----CceeEEEEecCCCCEEEEeeCCC
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTR-----SKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+|...|++++|+|+|.+||+++.||.|+||+..+. .....|. ..+.+++|+| ++.+|++|+.||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~----------l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs~DG 151 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKM----------LTNLDSKGNLSSRTYHCFEWNP-IESSIVVGNEDG 151 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEE----------EEECCCSSCSTTTCEEEEEECS-SSSCEEEEETTS
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCce----------eeeccCCCccccccEEEEEEcC-CCCEEEEEcCCC
Confidence 56889999999999999999999999999995431 1111123 2599999999 899999999999
Q ss_pred cEEEEeCCCCe-------eeeEE----eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc--ceeee
Q 042883 402 IVTIWDVTTSQ-------SVMEY----EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ--PLHVF 468 (597)
Q Consensus 402 ~i~iwd~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~--~~~~~ 468 (597)
.|+|||+.++. .+.++ .+|.+.|.+++|+| ++ +++++.| +.|++||+..... ...++
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D-------~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSN-------NSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETT-------CCEEEECCCSSSSCCCEEEE
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCC-------CeEEEEECCCCccccceeee
Confidence 99999998875 25666 56778999999999 66 6666644 4599999986331 22456
Q ss_pred -ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEE--eecCCEEEEEeCCCcEEEEEccC-
Q 042883 469 -NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGL--TVNNEYIACGSETNEVFVYHKAI- 544 (597)
Q Consensus 469 -~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~--s~~g~~l~~~~~d~~i~iwd~~~- 544 (597)
.+|...|.+++|+ ++.|++++ +++|++||+.+++......+|...++.++| +|+|..+++++.||. ++|....
T Consensus 222 ~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~ 298 (588)
T 2j04_A 222 QNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDEL 298 (588)
T ss_dssp ECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSE
T ss_pred cccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccE
Confidence 4788999999999 77888887 699999999987764444489999999999 999999999999999 9998741
Q ss_pred -----Ccccc-------ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 545 -----SKPAA-------SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 545 -----~~~~~-------~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
+..+. ..... ......-.+...|.+++|+|+|..+|+++.
T Consensus 299 ~~spd~~l~a~~d~~v~lW~~~--g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 299 HVTADNIIAPYLEKKFKKWSTI--WNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEECCCSSHHHHHHHHHHTTTT--TTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCceEEEEcCCEEEEEECC--CCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 11110 00000 000111112557999999999999998763
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.8e-27 Score=239.08 Aligned_cols=214 Identities=22% Similarity=0.326 Sum_probs=181.7
Q ss_pred ccCCCCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i 403 (597)
+.+|...|++++|+|++. +|++|+.||.|++|++..................|...|.+++|+|.++.+|++++.||.|
T Consensus 177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 347999999999999988 9999999999999999874211111111234447888999999999778999999999999
Q ss_pred EEEeCCCC---eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEe
Q 042883 404 TIWDVTTS---QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKF 480 (597)
Q Consensus 404 ~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~ 480 (597)
++||++++ ..+..+..|...|++++|+|.+..++++|+.|+ .|++||++....++..+.+|...|.+++|
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-------~v~vwd~~~~~~~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-------TVALWDLRNLKLKLHSFESHKDEIFQVQW 329 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-------EEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-------eEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence 99999887 567778899999999999995556788988655 49999999867788899999999999999
Q ss_pred cCC--CeEEEeeCCCcEEEEEcCC--------------CcceeeeeCCCCceeEEEEeecCC-EEEEEeCCCcEEEEEcc
Q 042883 481 LSN--NELASASTDSSLRLWDVKE--------------NLPLHTFRGHTNEKNFVGLTVNNE-YIACGSETNEVFVYHKA 543 (597)
Q Consensus 481 ~~~--~~l~s~~~d~~v~iwd~~~--------------~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~ 543 (597)
+|+ ..|++++.||.|+|||+.. ...+..+.+|...|++++|+|++. +|++++.||.|+||++.
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 998 3599999999999999987 356777788999999999999999 89999999999999986
Q ss_pred CC
Q 042883 544 IS 545 (597)
Q Consensus 544 ~~ 545 (597)
..
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 110
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=5.1e-27 Score=234.63 Aligned_cols=199 Identities=16% Similarity=0.196 Sum_probs=172.1
Q ss_pred cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeE
Q 042883 376 PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHI 453 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i 453 (597)
+|...|++++|+|++..+|++|+.||.|+|||+.++.....+. +|...|.+++|+|.++.++++++.|+ .|
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-------~i 143 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG-------AT 143 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT-------EE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC-------EE
Confidence 5678999999999433899999999999999999887776665 69999999999996678999998655 49
Q ss_pred EEEEccCCCcceeeecc---CCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCC-EE
Q 042883 454 HYYDLRNISQPLHVFNG---HKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE-YI 528 (597)
Q Consensus 454 ~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l 528 (597)
++||++. ..+..+.. |...|.+++|+|+ ..|++++.|+.|++||+ +++.+..+.+|...|.+++|+|++. +|
T Consensus 144 ~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 144 TLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred EEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence 9999984 44555544 4478999999999 88999999999999999 5778899999999999999999999 99
Q ss_pred EEEeCCCcEEEEEccCCc----cccccccCCCCCCCcCcCCCcceEEEEEcc-CCCeEEEecCcccEEEEEec
Q 042883 529 ACGSETNEVFVYHKAISK----PAASHRFGSDADHVDDDMGSYFISAVCWKS-DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 529 ~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~~~dg~v~iwd~~ 596 (597)
++++.|+.|++||+.+++ .+..+ .|...|++++|+| ++.+|++++.||.|+|||+.
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 999999999999999843 33322 2588999999999 99999999999999999975
No 111
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.4e-27 Score=233.34 Aligned_cols=209 Identities=17% Similarity=0.204 Sum_probs=177.4
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC--CCeeeeEEeeccceeEEEEeCCC-CCceEEeecCCCcccCC
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT--TSQSVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVGSA 449 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~~~ 449 (597)
...+|...|++++|+| ++.+|++|+.||.|+|||+. ++..+..+.+|...|++++|+|+ ++.+|++++.|+.
T Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~---- 80 (379)
T 3jrp_A 6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK---- 80 (379)
T ss_dssp CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC----
T ss_pred EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE----
Confidence 4557899999999999 78999999999999999997 55677888899999999999872 2899999986555
Q ss_pred CCeEEEEEccCCCc--ceeeeccCCCceEEEEecCC---CeEEEeeCCCcEEEEEcCCCc--ceeeeeCCCCceeEEEEe
Q 042883 450 DHHIHYYDLRNISQ--PLHVFNGHKKAVSYVKFLSN---NELASASTDSSLRLWDVKENL--PLHTFRGHTNEKNFVGLT 522 (597)
Q Consensus 450 d~~i~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~---~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~v~~s 522 (597)
|++||+.. +. .+..+..|...|.+++|+|+ ..|++++.|+.|++||++++. ....+.+|...|.+++|+
T Consensus 81 ---v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (379)
T 3jrp_A 81 ---VLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156 (379)
T ss_dssp ---EEEEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred ---EEEEEcCC-CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence 99999997 44 66777889999999999997 579999999999999998863 445667899999999999
Q ss_pred e-------------cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccC---CCeEEEecC
Q 042883 523 V-------------NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSD---SPTMLTANR 586 (597)
Q Consensus 523 ~-------------~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~~~l~s~~~ 586 (597)
| ++.+|++++.||.|++||+.++......... ...|...|++++|+|+ +.+|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-------LEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE-------ECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE-------EecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 9 6999999999999999999877643221110 0136889999999999 899999999
Q ss_pred cccEEEEEecC
Q 042883 587 KGAIKVLVLAA 597 (597)
Q Consensus 587 dg~v~iwd~~~ 597 (597)
||.|+|||+.+
T Consensus 230 dg~i~iwd~~~ 240 (379)
T 3jrp_A 230 DRTCIIWTQDN 240 (379)
T ss_dssp TSCEEEEEESS
T ss_pred CCEEEEEeCCC
Confidence 99999999863
No 112
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-26 Score=221.10 Aligned_cols=217 Identities=18% Similarity=0.330 Sum_probs=187.9
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
..|.+.|.+++|+|++.+|++++.||.|++|++..... .........|...|.+++|+ ++++++++.||.|++
T Consensus 56 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~ 128 (313)
T 3odt_A 56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG----EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKV 128 (313)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT----SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEE
T ss_pred ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC----CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEE
Confidence 46899999999999999999999999999999876511 11223445688999999994 569999999999999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------------cCCCCe
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---------------------------------GSADHH 452 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---------------------------------~~~d~~ 452 (597)
|| .+.....+..|...+.++.|.|.++.++++++.|+.+ ++.|+.
T Consensus 129 ~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~ 206 (313)
T 3odt_A 129 WK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206 (313)
T ss_dssp EE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSE
T ss_pred Ec--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCe
Confidence 99 6778888888999999999988778889999988877 788999
Q ss_pred EEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe
Q 042883 453 IHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 453 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
|++||+++ +..+..+.+|...|.+++|+|++.|++++.||.|++||+++++.+..+..|...|.+++|+|+|. +++++
T Consensus 207 i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 284 (313)
T 3odt_A 207 IKLVDMHT-GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGS 284 (313)
T ss_dssp EEEEETTT-CCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEE
T ss_pred EEEEECCc-hhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEe
Confidence 99999997 77888899999999999999998899999999999999999999999999999999999999998 55788
Q ss_pred CCCcEEEEEccCCcccccccc
Q 042883 533 ETNEVFVYHKAISKPAASHRF 553 (597)
Q Consensus 533 ~d~~i~iwd~~~~~~~~~~~~ 553 (597)
.||.|++||+.+++.......
T Consensus 285 ~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 285 SDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp TTSCEEEEESCGGGCCC----
T ss_pred CCCcEEEEeCCCCceeehhhh
Confidence 999999999998877655543
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=4.5e-26 Score=231.80 Aligned_cols=248 Identities=12% Similarity=0.154 Sum_probs=198.0
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCCCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg~i 403 (597)
..+|.+.|.+++|++++.++++++.|+.|++||+.++ ........+...+.+++|+| ++..+ ++++.|+.|
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i 236 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-------AYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDI 236 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-------CEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEE
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-------eEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcE
Confidence 3478899999999999999999999999999999875 22223335678899999999 55555 566689999
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecC-CCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecC
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD-DCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
++||+.+++.+..+.. ...+.+++|+| ++..+++++. ++.+...|+.|++||+++ ++.+..+ .|...+..++|+|
T Consensus 237 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~ 312 (433)
T 3bws_A 237 SVIDRKTKLEIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGN 312 (433)
T ss_dssp EEEETTTTEEEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECS
T ss_pred EEEECCCCcEEEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC-CcEEeec-cCCCCcceEEECC
Confidence 9999999988877765 45699999999 6666666553 222222477899999987 5555544 4556889999999
Q ss_pred CC-e-EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC---------------CCcEEEEEccCC
Q 042883 483 NN-E-LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE---------------TNEVFVYHKAIS 545 (597)
Q Consensus 483 ~~-~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~---------------d~~i~iwd~~~~ 545 (597)
++ . +++++.|+.|++||+.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||+.++
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred CCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 94 4 5667899999999999988887776 5677899999999998888776 579999999998
Q ss_pred ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEecC
Q 042883 546 KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVLAA 597 (597)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~~ 597 (597)
+.+..+.. ...+.+++|+|+|++|++++ .|+.|++|+++.
T Consensus 392 ~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 TVKEFWEA------------GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEEEC------------SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cEEEEecC------------CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88776653 44689999999999998876 599999999863
No 114
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-26 Score=227.68 Aligned_cols=204 Identities=19% Similarity=0.347 Sum_probs=178.5
Q ss_pred CceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCC
Q 042883 371 PMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 371 ~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d 450 (597)
.....+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg------ 96 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADY------ 96 (369)
T ss_dssp EEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTT------
T ss_pred cEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCC------
Confidence 345567899999999999 789999999999999999999999999999999999999999 888999988655
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCC-----CcEEEEEcCCCc-----------ceeeeeCCC
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTD-----SSLRLWDVKENL-----------PLHTFRGHT 513 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d-----~~v~iwd~~~~~-----------~~~~~~~~~ 513 (597)
.|++||+.+ +..+..+. +...+.+++|+|+ ..+++++.+ |.|++||+..+. .+..+..|.
T Consensus 97 -~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 97 -SIKLWDVSN-GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp -EEEEEETTT-CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred -eEEEEECCC-CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 499999997 66777776 8889999999999 788899888 999999998654 344555666
Q ss_pred C--ceeEEEEeecCCEEEEEeCCCcEEEEEccC-CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccE
Q 042883 514 N--EKNFVGLTVNNEYIACGSETNEVFVYHKAI-SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAI 590 (597)
Q Consensus 514 ~--~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v 590 (597)
. .+.+++|+|+|++|++++.||.|++||+.+ +..+..+. .|...|.+++|+|++.+|++++.||.|
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~d~~i 242 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-----------LHEKSISDMQFSPDLTYFITSSRDTNS 242 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-----------CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-----------cCCCceeEEEECCCCCEEEEecCCceE
Confidence 6 899999999999999999999999999988 55555554 257889999999999999999999999
Q ss_pred EEEEec
Q 042883 591 KVLVLA 596 (597)
Q Consensus 591 ~iwd~~ 596 (597)
++||+.
T Consensus 243 ~v~d~~ 248 (369)
T 3zwl_B 243 FLVDVS 248 (369)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999975
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1e-25 Score=225.82 Aligned_cols=236 Identities=10% Similarity=0.087 Sum_probs=189.2
Q ss_pred CCCcEEEEEEcCCCCEE-EEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCCCcEEE
Q 042883 328 AANIISSIEFDRDDELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDGIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg~i~i 405 (597)
+...+.+++|+|+++++ ++++.|+.|++||+.++ .......+...+.+++|+| ++..| ++++.++.|++
T Consensus 30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSV 100 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC--------eEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEE
Confidence 33458999999999977 67778999999999876 2333444455899999999 56655 56667799999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceE-EeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSML-VSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN- 483 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~- 483 (597)
||+.+++.+..+..+ ..+.+++|+| ++..+ ++++. ++.|++||+.+ ++.+..+..+ ..+..++|+|+
T Consensus 101 ~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~-------~~~v~~~d~~~-~~~~~~~~~~-~~~~~~~~~~dg 169 (391)
T 1l0q_A 101 IDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNG-------DKTVSVINTVT-KAVINTVSVG-RSPKGIAVTPDG 169 (391)
T ss_dssp EETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETT-------TTEEEEEETTT-TEEEEEEECC-SSEEEEEECTTS
T ss_pred EECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCC-------CCEEEEEECCC-CcEEEEEecC-CCcceEEECCCC
Confidence 999999888877654 4689999999 55544 67764 45599999987 6666666654 45799999999
Q ss_pred CeE-EEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe---CCCcEEEEEccCCccccccccCCCCCC
Q 042883 484 NEL-ASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS---ETNEVFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 484 ~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
..+ ++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++++ .++.|++||+.+++.+..+..
T Consensus 170 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~------ 242 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV------ 242 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC------
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec------
Confidence 555 677889999999999988877776 456788999999999998887 689999999999887766653
Q ss_pred CcCcCCCcceEEEEEccCCCeE-EEecCcccEEEEEec
Q 042883 560 VDDDMGSYFISAVCWKSDSPTM-LTANRKGAIKVLVLA 596 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l-~s~~~dg~v~iwd~~ 596 (597)
...+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 243 ------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 243 ------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ------CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ------CCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 3357899999999987 677899999999975
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-26 Score=228.44 Aligned_cols=236 Identities=13% Similarity=0.119 Sum_probs=174.8
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCc--cCC-CCceEecCCCceeEEEEecC-CCCEEEEeeCCCcEEE
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPR--DVH-YPMVEMPTRSKLSCLSWNKY-TKNLIASSDYDGIVTI 405 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~--~~~-~~~~~~~~~~~i~~v~~~~~-~~~~l~s~~~dg~i~i 405 (597)
..|.++.|+|+ +++++.|++|++|+......... ... ......+|...|.+++|+|. ++.++++|+.||.|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45677778887 99999999999998764310000 001 11223356678999999982 3789999999999999
Q ss_pred EeCCCCeeeeEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce-eeecc-CCCceEEEEecC
Q 042883 406 WDVTTSQSVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL-HVFNG-HKKAVSYVKFLS 482 (597)
Q Consensus 406 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~-~~~~~-~~~~v~~v~~~~ 482 (597)
||+.+++.+.... .+...|.+++|+| ++.++++|+.|+. |++||+++ +..+ ..+.. |.+.|.+++|+|
T Consensus 154 wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~-------i~iwd~~~-~~~~~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGI-------LDVYNLSS-PDQASSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp EESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSC-------EEEEESSC-TTSCCEECCCCTTSCEEEEEECT
T ss_pred EECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCE-------EEEEECCC-CCCCccEEeccCCCCEEEEEEeC
Confidence 9999988876653 4556899999999 8999999986555 99999998 4444 77777 999999999999
Q ss_pred C-CeEEEeeCCCcEEEEEcCCCcceeeeeC---CCCcee--EEEEeecCCEEEEEeC-CCcEEEEEccCCccccccccCC
Q 042883 483 N-NELASASTDSSLRLWDVKENLPLHTFRG---HTNEKN--FVGLTVNNEYIACGSE-TNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~--~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
+ .+|++++ |+.|++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|+||++.........
T Consensus 225 ~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---- 299 (343)
T 3lrv_A 225 NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---- 299 (343)
T ss_dssp TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----
T ss_pred CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----
Confidence 9 6788888 55999999999887666553 334444 5999999999999988 999999998665432211
Q ss_pred CCCCCcCcCCCcceEEEEEcc---CCCeEEEecCcccEEEE
Q 042883 556 DADHVDDDMGSYFISAVCWKS---DSPTMLTANRKGAIKVL 593 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~---~~~~l~s~~~dg~v~iw 593 (597)
.++..++|++ ++..+++++.||.+.++
T Consensus 300 -----------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 300 -----------DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp -----------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred -----------cCceeEecCccccccceeEEEecCCceEEE
Confidence 2356667776 66677777777777665
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.9e-26 Score=216.42 Aligned_cols=206 Identities=13% Similarity=0.212 Sum_probs=151.9
Q ss_pred CCCcEEEEEEcCC----CCEEEEeeC--------------------CCcEEEEecccCccCCccCCCCceEecCCCceeE
Q 042883 328 AANIISSIEFDRD----DELFASAGV--------------------SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC 383 (597)
Q Consensus 328 ~~~~v~~i~~~~~----~~~l~t~~~--------------------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 383 (597)
+.+.|++++|+|+ +.++++++. |+.|++|++... .........|...++.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d------G~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED------GGGKENQFLMPPEETI 183 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT------SCEEEEEEECCCSSCE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC------CceeeeeccCCCceee
Confidence 3457889999998 778877653 667777776432 0122233456667777
Q ss_pred EEEec--CCCCEEEEeeCCCcEEEEeCCCCeeeeEEeecc---ceeEEEEeCCCCCceEEeecCCCc-----ccCCCCeE
Q 042883 384 LSWNK--YTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHE---KRAWSVDFSCTEPSMLVSGSDDCK-----VGSADHHI 453 (597)
Q Consensus 384 v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~d~~-----~~~~d~~i 453 (597)
++|+| .++..|++|+.|++|+|||+.+++.+.++.+|. ..+.+++|+| ++.++++++.+.. .|+.|++|
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEE
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEE
Confidence 77777 356899999999999999999999999998644 4677789999 8888877665322 26688899
Q ss_pred EEEEccCCCcceeee-----ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCcee-EEEEeecCCE
Q 042883 454 HYYDLRNISQPLHVF-----NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKN-FVGLTVNNEY 527 (597)
Q Consensus 454 ~i~d~~~~~~~~~~~-----~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~v~~s~~g~~ 527 (597)
++||..+ ++.+..+ .+|...+.+..++ ...+++++.|++|+|||+.+++.+.++.+|...+. .++|+|||++
T Consensus 263 klWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 263 IVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp EEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred EEEECCC-CEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 9999987 6655544 3566555544444 46789999999999999999999999999887655 6899999999
Q ss_pred EEEEeCCCcEEEEEc
Q 042883 528 IACGSETNEVFVYHK 542 (597)
Q Consensus 528 l~~~~~d~~i~iwd~ 542 (597)
|++|+.|++|+|||+
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999995
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=7.2e-26 Score=222.74 Aligned_cols=207 Identities=15% Similarity=0.243 Sum_probs=175.8
Q ss_pred eEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC----eeeeEEeeccceeEEEEeCCC-CCceEEeecCCCccc
Q 042883 373 VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS----QSVMEYEEHEKRAWSVDFSCT-EPSMLVSGSDDCKVG 447 (597)
Q Consensus 373 ~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~~~ 447 (597)
...+|...|++++|+| ++.+|++|+.||.|++||+.++ .....+.+|...|++++|+|. ++.+|++++.|+.
T Consensus 6 ~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~-- 82 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT-- 82 (351)
T ss_dssp EECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC--
T ss_pred cCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe--
Confidence 4457899999999999 7899999999999999999876 466777889999999999985 4889999986555
Q ss_pred CCCCeEEEEEccCCC--------cceeeeccCCCceEEEEecCC---CeEEEeeCCCcEEEEEcCCCcceeeee------
Q 042883 448 SADHHIHYYDLRNIS--------QPLHVFNGHKKAVSYVKFLSN---NELASASTDSSLRLWDVKENLPLHTFR------ 510 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~--------~~~~~~~~~~~~v~~v~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~------ 510 (597)
|++||++.+. ..+..+.+|...|.+++|+|+ .+|++++.||.|++||+++++.+..+.
T Consensus 83 -----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 83 -----VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp -----EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred -----EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 9999998732 446778889999999999996 469999999999999999887665543
Q ss_pred -------CCCCceeEEEEeec---CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCC--
Q 042883 511 -------GHTNEKNFVGLTVN---NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS-- 578 (597)
Q Consensus 511 -------~~~~~v~~v~~s~~---g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-- 578 (597)
+|...+.+++|+|+ +.++++++.|+.+.+|+...++......+. +|...|++++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP---------GHKSLIRSISWAPSIGR 228 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC---------CCCSCEEEEEECCCSSC
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC---------CCCcceeEEEECCCCCC
Confidence 57788999999997 899999999999988887777653333322 368899999999998
Q ss_pred --CeEEEecCcccEEEEEec
Q 042883 579 --PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 579 --~~l~s~~~dg~v~iwd~~ 596 (597)
.+|++|+.||.|++||+.
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEE
T ss_pred cceEEEEEcCCCeEEEEeCC
Confidence 799999999999999985
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=4e-25 Score=214.68 Aligned_cols=208 Identities=17% Similarity=0.298 Sum_probs=176.3
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|...|++++|+|++++|++|+.||+|++|++.++ .......+|...+.++.+. +..+++|+.++.+++
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-------~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~ 133 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHH 133 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-------eeEEEecCccceEEEeecC---CCEEEEEecCCceEe
Confidence 368889999999999999999999999999999876 2333445677777776654 579999999999999
Q ss_pred EeCCCC-eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc--------------------------------------
Q 042883 406 WDVTTS-QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV-------------------------------------- 446 (597)
Q Consensus 406 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~-------------------------------------- 446 (597)
|+...+ ..+..+.+|...+..+.+.+ ++.++++++.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 134 HDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred eecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence 998765 45677788999999999998 88899999999876
Q ss_pred ----cCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEe--eCCCcEEEEEcCCCcceeeeeCCCCceeEE
Q 042883 447 ----GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASA--STDSSLRLWDVKENLPLHTFRGHTNEKNFV 519 (597)
Q Consensus 447 ----~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v 519 (597)
++.++.|++||... ..... ...+...+..+.|+|. +.++++ +.|+.|+|||+++++++..+.+|.+.|+++
T Consensus 213 ~~~~~~~~~~i~lwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l 290 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCS-GACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 290 (318)
T ss_dssp EEEECTTTCEEEEEETTT-CCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEEecCCCCEEEEEeccc-ccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 56788999999986 33333 3446778999999998 666554 479999999999999999999999999999
Q ss_pred EEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 520 GLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 520 ~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
+|+|+|++|++|+.||.|+|||+....
T Consensus 291 ~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 291 TMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999999986554
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=243.46 Aligned_cols=208 Identities=17% Similarity=0.215 Sum_probs=174.8
Q ss_pred EecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC--CCeeeeEEeeccceeEEEEeCCCC-CceEEeecCCCcccCCC
Q 042883 374 EMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT--TSQSVMEYEEHEKRAWSVDFSCTE-PSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~~~~~d 450 (597)
..+|.+.|++++|+| ++.+|++|+.||.|+|||+. ++..+..+.+|.+.|++++|+|+. +.++++|+.||.
T Consensus 5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~----- 78 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK----- 78 (753)
T ss_dssp ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC-----
T ss_pred cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe-----
Confidence 457899999999999 78899999999999999997 556778888999999999999832 889999996555
Q ss_pred CeEEEEEccCCCc--ceeeeccCCCceEEEEecCC---CeEEEeeCCCcEEEEEcCCC--cceeeeeCCCCceeEEEEee
Q 042883 451 HHIHYYDLRNISQ--PLHVFNGHKKAVSYVKFLSN---NELASASTDSSLRLWDVKEN--LPLHTFRGHTNEKNFVGLTV 523 (597)
Q Consensus 451 ~~i~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~---~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~v~~s~ 523 (597)
|++||+.+ +. .+..+.+|...|.+++|+|+ ..+++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 79 --I~vwd~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 79 --VLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp --EEEEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred --EEEEECCC-CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 99999997 44 66777889999999999996 57999999999999999886 34556678999999999999
Q ss_pred -------------cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccC---CCeEEEecCc
Q 042883 524 -------------NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSD---SPTMLTANRK 587 (597)
Q Consensus 524 -------------~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~~~l~s~~~d 587 (597)
++.+|++|+.||.|++||+.++........ ...+|...|++++|+|+ +.+|++|+.|
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------TLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE-------EECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee-------eecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 689999999999999999988743221111 00246889999999999 8999999999
Q ss_pred ccEEEEEecC
Q 042883 588 GAIKVLVLAA 597 (597)
Q Consensus 588 g~v~iwd~~~ 597 (597)
|.|+|||+.+
T Consensus 229 g~I~iwd~~~ 238 (753)
T 3jro_A 229 RTCIIWTQDN 238 (753)
T ss_dssp SCEEEEEESS
T ss_pred CEEEEecCCC
Confidence 9999999863
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=4.7e-25 Score=217.39 Aligned_cols=200 Identities=13% Similarity=0.151 Sum_probs=156.6
Q ss_pred ecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 375 MPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 375 ~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
..|...|++++|+| ++.+|++|+.+| ++|||+.++........ ..+..+++.+..+.++++++.| +.|+
T Consensus 16 ~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d-------~~v~ 84 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVK-------EVVH 84 (355)
T ss_dssp ---CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSST-------TEEE
T ss_pred ccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCc-------cEEE
Confidence 46789999999999 788999988665 78999988766554432 3477788888444444566644 4599
Q ss_pred EEEccCCCcceeeeccCCCceEEEEecCCC------------------------------------eEEE--eeCCCcEE
Q 042883 455 YYDLRNISQPLHVFNGHKKAVSYVKFLSNN------------------------------------ELAS--ASTDSSLR 496 (597)
Q Consensus 455 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~------------------------------------~l~s--~~~d~~v~ 496 (597)
+||+.+ ++.+..+. +...|.++.++++. .+++ |+.||.|+
T Consensus 85 iWd~~~-~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 85 IWDDVK-KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIH 162 (355)
T ss_dssp EEETTT-TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEE
T ss_pred EEECCC-CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEE
Confidence 999987 66666665 55678888776642 2333 57889999
Q ss_pred EEEcCCCc---------------c-eeeeeCCCCceeEEEEeecCCEEEEEeCCCc-EEEEEccCCccccccccCCCCCC
Q 042883 497 LWDVKENL---------------P-LHTFRGHTNEKNFVGLTVNNEYIACGSETNE-VFVYHKAISKPAASHRFGSDADH 559 (597)
Q Consensus 497 iwd~~~~~---------------~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~ 559 (597)
+||+.++. + +..+.+|...|++++|+|+|.+|++|+.||+ |+|||+.+++.+..+..+
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g----- 237 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG----- 237 (355)
T ss_dssp EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT-----
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-----
Confidence 99998765 2 7888999999999999999999999999998 999999999888777532
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.|...|++++|+|+|.+|++++.||+|+|||+.
T Consensus 238 ----~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 238 ----LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp ----TCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred ----CCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 258899999999999999999999999999985
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=4.7e-25 Score=218.78 Aligned_cols=214 Identities=18% Similarity=0.311 Sum_probs=164.5
Q ss_pred EecCCCceeEEEEecCC--CCEEEEeeCCCcEEEEeCCC-Ceee-eEEeeccceeEEEEeCCCCCceEEeecCCCcccCC
Q 042883 374 EMPTRSKLSCLSWNKYT--KNLIASSDYDGIVTIWDVTT-SQSV-MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSA 449 (597)
Q Consensus 374 ~~~~~~~i~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~ 449 (597)
..+|...|++++|+|++ +.+|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+| ++.+|++++.|+
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg----- 108 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDK----- 108 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTS-----
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCC-----
Confidence 34688999999999954 69999999999999999987 5444 77889999999999999 889999998655
Q ss_pred CCeEEEEEccCCCcceeeeccCCCceEEEEe--cCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCC-------------
Q 042883 450 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKF--LSN-NELASASTDSSLRLWDVKENLPLHTFRGHT------------- 513 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~--~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~------------- 513 (597)
.|++||+.+ +..+. +.+|...|.+++| +|+ ..|++++.||.|++||+++++.+..+..+.
T Consensus 109 --~v~iwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 3mmy_A 109 --TAKMWDLSS-NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184 (368)
T ss_dssp --EEEEEETTT-TEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred --cEEEEEcCC-CCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence 499999996 44444 5669999999999 777 569999999999999999988777766443
Q ss_pred ----------------------------CceeEEEEeecCCE----EEEEeCCCcEEEEEccCCcc---ccccccCC-CC
Q 042883 514 ----------------------------NEKNFVGLTVNNEY----IACGSETNEVFVYHKAISKP---AASHRFGS-DA 557 (597)
Q Consensus 514 ----------------------------~~v~~v~~s~~g~~----l~~~~~d~~i~iwd~~~~~~---~~~~~~~~-~~ 557 (597)
..+..+++.+++.. +++++.||.|++||+..... ...+.... ..
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 23344555555443 88999999999999987643 22222110 00
Q ss_pred CCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 558 DHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
......+|...|++++|+|++.+|++|+.||.|+|||+.+
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 0000112233799999999999999999999999999863
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=2.7e-25 Score=226.02 Aligned_cols=243 Identities=13% Similarity=0.072 Sum_probs=192.5
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...+.+++|+|++.++++++.++.|++||+.++.... ........+|...|.+++|+| ++.++++++.|+.|++||+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR--LSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--ECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEET
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--ecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEEC
Confidence 3456699999988888888889999999998761110 000112235777899999988 7889999999999999999
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEE
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA 487 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~ 487 (597)
.+++.+..+..|...+.+++|+|++..++++++. ++.|++||+++ +..+..+.. ...+.+++|+|+ ..++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~i~~~d~~~-~~~~~~~~~-~~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI-------SEDISVIDRKT-KLEIRKTDK-IGLPRGLLLSKDGKELY 269 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT-------TTEEEEEETTT-TEEEEECCC-CSEEEEEEECTTSSEEE
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-------CCcEEEEECCC-CcEEEEecC-CCCceEEEEcCCCCEEE
Confidence 9999999898889999999999944444466654 44599999987 666666654 456999999999 5787
Q ss_pred Eee--------CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEE-EEEeCCCcEEEEEccCCccccccccCCCCC
Q 042883 488 SAS--------TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYI-ACGSETNEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 488 s~~--------~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
+++ .||.|++||+.+++.+..+ .+...+..++|+|+|+++ ++++.|+.|++||+.+++.+..+..
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~----- 343 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV----- 343 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC-----
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC-----
Confidence 777 4889999999988877665 345578899999999755 5668899999999998887766542
Q ss_pred CCcCcCCCcceEEEEEccCCCeEEEecC---------------cccEEEEEec
Q 042883 559 HVDDDMGSYFISAVCWKSDSPTMLTANR---------------KGAIKVLVLA 596 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~~l~s~~~---------------dg~v~iwd~~ 596 (597)
...+.+++|+|+|++|++++. ||.|++||+.
T Consensus 344 -------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 344 -------FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp -------SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred -------CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 567899999999998888765 5799999975
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2e-25 Score=223.26 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=150.0
Q ss_pred cccCCCCcEEEEEEcC--------CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEE
Q 042883 324 DLFHAANIISSIEFDR--------DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIA 395 (597)
Q Consensus 324 ~~~~~~~~v~~i~~~~--------~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~ 395 (597)
.+.+|.+.|++++|+| ++++||+|+.|++|+|||+.+. ........|...|.+++|+|++..+|+
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE-------GPILAGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT-------EEEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC-------ceeeeecCCCCCcEEEEECCCCCceEE
Confidence 4568999999999998 7899999999999999999765 234456678899999999996567899
Q ss_pred EeeCCCcEEEEeCCCCeeeeE-------------------------EeeccceeEEEEeCCCCCceEEeecCCCcccCCC
Q 042883 396 SSDYDGIVTIWDVTTSQSVME-------------------------YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 396 s~~~dg~i~iwd~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d 450 (597)
+|+.||.|++||+.+++.... ..+|...+.++.|.+.++..+++++.|+
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~------ 277 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG------ 277 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS------
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC------
Confidence 999999999999987653322 1356778899999755889999998655
Q ss_pred CeEEEEEccCCCcceeeeccCCCceEEEE------------------ecCC--C-eEEEeeCCCcEEEEEcCCCcceeee
Q 042883 451 HHIHYYDLRNISQPLHVFNGHKKAVSYVK------------------FLSN--N-ELASASTDSSLRLWDVKENLPLHTF 509 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~~~~~v~~v~------------------~~~~--~-~l~s~~~d~~v~iwd~~~~~~~~~~ 509 (597)
.+++||+.. +.....+..|...+..+. |+|. + ++++|+.||.|+|||+.++..+..+
T Consensus 278 -~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~ 355 (393)
T 4gq1_A 278 -AWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP 355 (393)
T ss_dssp -EEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE
T ss_pred -CEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe
Confidence 499999986 444444444443333332 3332 3 3567788999999999999999888
Q ss_pred eCCCCceeEEEEeecCCEEEEEeCCCcEEEEEc
Q 042883 510 RGHTNEKNFVGLTVNNEYIACGSETNEVFVYHK 542 (597)
Q Consensus 510 ~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 542 (597)
.+|...|.+++|+|||++||+++.+| +.+|.+
T Consensus 356 ~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 356 IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 88999999999999999999998766 556654
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=3.1e-24 Score=215.02 Aligned_cols=222 Identities=9% Similarity=0.089 Sum_probs=179.3
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEE-EEeeCCCcEEEEeCCCCeeeeEEeec
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLI-ASSDYDGIVTIWDVTTSQSVMEYEEH 420 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~ 420 (597)
.++++++.|+.|++||+.++ .......+...+.+++|+| ++..+ ++++.|+.|++||+.+++.+..+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~--------~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN--------KVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT--------EEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCCC--------eEEEEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEECC
Confidence 46788889999999999876 2333344556789999999 56654 77778999999999999998888655
Q ss_pred cceeEEEEeCCCCCceE-EeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE-EEeeCCCcEEE
Q 042883 421 EKRAWSVDFSCTEPSML-VSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL-ASASTDSSLRL 497 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l-~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l-~s~~~d~~v~i 497 (597)
. .+.+++|+| ++..+ ++++. ++.|++||+.+ ++.+..+.. ...+.+++|+|+ ..+ ++++.|+.|++
T Consensus 74 ~-~v~~~~~sp-dg~~l~~~~~~-------~~~v~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 74 S-SPQGVAVSP-DGKQVYVTNMA-------SSTLSVIDTTS-NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp S-SEEEEEECT-TSSEEEEEETT-------TTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred C-CccceEECC-CCCEEEEEECC-------CCEEEEEECCC-CeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 5 899999999 55554 55554 45599999997 666666664 456899999999 545 68888999999
Q ss_pred EEcCCCcceeeeeCCCCceeEEEEeecCCEE-EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc
Q 042883 498 WDVKENLPLHTFRGHTNEKNFVGLTVNNEYI-ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS 576 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~ 576 (597)
||+.+++.+..+..+. .+..++|+|+|++| ++++.++.|++||+.+++....+.. ...+.+++|+|
T Consensus 143 ~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~~~ 209 (391)
T 1l0q_A 143 INTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV------------EAAPSGIAVNP 209 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------SSEEEEEEECT
T ss_pred EECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec------------CCCccceEECC
Confidence 9999999888887654 56899999999887 5677889999999999877766542 55789999999
Q ss_pred CCCeEEEec---CcccEEEEEec
Q 042883 577 DSPTMLTAN---RKGAIKVLVLA 596 (597)
Q Consensus 577 ~~~~l~s~~---~dg~v~iwd~~ 596 (597)
+|.+|++++ .++.|++||+.
T Consensus 210 ~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 210 EGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp TSSEEEEEEECSSCCEEEEEETT
T ss_pred CCCEEEEEecCcCCCcEEEEECC
Confidence 999998887 68999999975
No 126
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=5.3e-25 Score=223.80 Aligned_cols=208 Identities=18% Similarity=0.390 Sum_probs=173.5
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
+.+|.+.|.+++| ++.+|++|+.||.|++||+.++ ........|...|.+++|++ +.+++|+.||.|+
T Consensus 169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~ 236 (435)
T 1p22_A 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIA 236 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEE
T ss_pred EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEE
Confidence 3479999999999 7889999999999999999876 22333446888999999974 5999999999999
Q ss_pred EEeCCCCeee---eEEeeccceeEEEEeCCCCCceEEeecCCCcc---------------------------------cC
Q 042883 405 IWDVTTSQSV---MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV---------------------------------GS 448 (597)
Q Consensus 405 iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~---------------------------------~~ 448 (597)
+||+.++... ..+.+|...|.+++| ++.++++++.|+.+ |+
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~ 313 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 313 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEe
Confidence 9999887655 667789999999999 45789999999887 78
Q ss_pred CCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCc---------ceeeeeCCCCceeEE
Q 042883 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL---------PLHTFRGHTNEKNFV 519 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~---------~~~~~~~~~~~v~~v 519 (597)
.||.|++||+++ +..+..+.+|...|.+++| ....|++|+.||.|++||+.++. .+..+.+|.+.|.++
T Consensus 314 ~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 314 SDNTIRLWDIEC-GACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp TTSCEEEEETTT-CCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred CCCeEEEEECCC-CCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 899999999998 7888899999999999999 34789999999999999997765 788889999999999
Q ss_pred EEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 520 GLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 520 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
+| ++.+|++|+.||.|++||+.+.......
T Consensus 392 ~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 392 QF--DEFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp EE--CSSCEEECCSSSEEEEEC----------
T ss_pred Ee--CCCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 99 7889999999999999999876654443
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=1.1e-21 Score=197.31 Aligned_cols=224 Identities=9% Similarity=0.152 Sum_probs=173.1
Q ss_pred CCEEEEeeCC------CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC---cEEEEeCCCC
Q 042883 341 DELFASAGVS------RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG---IVTIWDVTTS 411 (597)
Q Consensus 341 ~~~l~t~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg---~i~iwd~~~~ 411 (597)
+..++.++.+ +.|++||+.+. .......|...+.+++|+| ++..|++++.++ .|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCC
Confidence 5566666554 79999999754 3445556788999999999 788899988775 9999999988
Q ss_pred eeeeEEeeccceeEEEEeCCCCCceEE-eecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEe
Q 042883 412 QSVMEYEEHEKRAWSVDFSCTEPSMLV-SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASA 489 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~ 489 (597)
+.. .+..+...+.+++|+| ++..|+ +++.++ +..|++||+.+ +. ...+..|...+.+++|+|+ ..|+++
T Consensus 214 ~~~-~l~~~~~~~~~~~~sp-dg~~la~~~~~~g-----~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSP-DGSKLAFALSKTG-----SLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp CEE-EEECCSSCEEEEEECT-TSSEEEEEECTTS-----SCEEEEEETTT-CC-EEECCCCSSCEEEEEECTTSSEEEEE
T ss_pred cEE-EeecCCCcccCEEEcC-CCCEEEEEEecCC-----CceEEEEECCC-CC-EEeCcCCCCcccceEECCCCCEEEEE
Confidence 765 4667788999999999 666555 666443 34599999986 33 4667778889999999999 567777
Q ss_pred eC-CC--cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC---CcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 490 ST-DS--SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET---NEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 490 ~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
+. ++ .|.+||+.+++. ..+..+...+..++|+|+|++|++++.+ +.|++||+.+++......
T Consensus 285 s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~----------- 352 (415)
T 2hqs_A 285 SDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS----------- 352 (415)
T ss_dssp ECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-----------
T ss_pred ECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-----------
Confidence 65 45 577779887763 4455567788899999999999888764 589999998877632211
Q ss_pred CCCcceEEEEEccCCCeEEEecCcc---cEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKG---AIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg---~v~iwd~~ 596 (597)
...+.+++|+|+|++|++++.++ .|++||++
T Consensus 353 --~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 353 --TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp --SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred --CCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 22789999999999999988777 79999874
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=4.8e-21 Score=192.63 Aligned_cols=224 Identities=8% Similarity=0.018 Sum_probs=171.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCC---cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEE-EeeCC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSR---RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIA-SSDYD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~-s~~~d 400 (597)
+.+|...|.+++|+|+|++|++++.++ .|++||+.++ .......+...+.+++|+| ++..|+ +++.+
T Consensus 174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--------~~~~l~~~~~~~~~~~~sp-dg~~la~~~~~~ 244 (415)
T 2hqs_A 174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------AVRQVASFPRHNGAPAFSP-DGSKLAFALSKT 244 (415)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------CEEEEECCSSCEEEEEECT-TSSEEEEEECTT
T ss_pred EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------cEEEeecCCCcccCEEEcC-CCCEEEEEEecC
Confidence 346888999999999999999998875 9999999876 2234445677899999999 677666 67666
Q ss_pred Cc--EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecC-CCcccCCCCeEEEEEccCCCcceeeeccCCCceEE
Q 042883 401 GI--VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSD-DCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477 (597)
Q Consensus 401 g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 477 (597)
+. |++||+.+++. ..+..|...+.+++|+| ++..|++++. ++ ...|++||+.+ +. ...+..+...+..
T Consensus 245 g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g-----~~~i~~~d~~~-~~-~~~l~~~~~~~~~ 315 (415)
T 2hqs_A 245 GSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAG-----RPQVYKVNING-GA-PQRITWEGSQNQD 315 (415)
T ss_dssp SSCEEEEEETTTCCE-EECCCCSSCEEEEEECT-TSSEEEEEECTTS-----SCEEEEEETTS-SC-CEECCCSSSEEEE
T ss_pred CCceEEEEECCCCCE-EeCcCCCCcccceEECC-CCCEEEEEECCCC-----CcEEEEEECCC-CC-EEEEecCCCcccC
Confidence 55 99999988765 56667888999999999 7777766654 33 12578888876 33 4445557778999
Q ss_pred EEecCC-CeEEEeeCC---CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC---cEEEEEccCCccccc
Q 042883 478 VKFLSN-NELASASTD---SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN---EVFVYHKAISKPAAS 550 (597)
Q Consensus 478 v~~~~~-~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~~~~~~~~~ 550 (597)
++|+|+ .+|++++.+ +.|++||+.+++. ..+..+. .+.+++|+|+|++|++++.++ .|++||+..+. ...
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~ 392 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KAR 392 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEE
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEE
Confidence 999999 667776654 5899999998776 4455554 789999999999999888776 79999987443 333
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
+. .|.+.|.+++|+|...+
T Consensus 393 l~-----------~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 393 LP-----------ATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp CC-----------CSSSEEEEEEECCCCCC
T ss_pred ee-----------CCCCCCcCCcccccccc
Confidence 33 24788999999997543
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=6.7e-21 Score=187.77 Aligned_cols=239 Identities=12% Similarity=0.036 Sum_probs=182.4
Q ss_pred CCcEEEEEEcCCCCEEEEeeC-------CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCC-EEEEeeCC
Q 042883 329 ANIISSIEFDRDDELFASAGV-------SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKN-LIASSDYD 400 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~-~l~s~~~d 400 (597)
...+..++|+|+++++++++. ++.|.+||..++ ...........+.+++|+| +++ +++++..+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~ 110 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHNDLKPFGATINN-TTQTLWFGNTVN 110 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEESSCCCSEEEET-TTTEEEEEETTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEecCCCcceEEECC-CCCEEEEEecCC
Confidence 356889999999998888774 568999999876 2223333345578899999 555 55666668
Q ss_pred CcEEEEeCCCCeeeeEEeeccc---------eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC
Q 042883 401 GIVTIWDVTTSQSVMEYEEHEK---------RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH 471 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 471 (597)
+.|.+||..+++.+..+..+.. .+.+++|+| ++..+++++. ..++.|.+||+.+ ++.+..+..+
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~-----~~~~~i~~~d~~~-~~~~~~~~~~ 183 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGI-----GKESVIWVVDGGN-IKLKTAIQNT 183 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEE-----SSSCEEEEEETTT-TEEEEEECCC
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEec-----CCCceEEEEcCCC-CceEEEecCC
Confidence 9999999999988877765432 278899999 5554444431 1245599999987 6667777656
Q ss_pred CCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeC----CCCceeEEEEeecCCEEEEEeC-CCcEEEEEccCC
Q 042883 472 KKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRG----HTNEKNFVGLTVNNEYIACGSE-TNEVFVYHKAIS 545 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~ 545 (597)
...+..++|+|+ +.+++++.++.|.+||+.+++.+..+.. +...+..++|+|+|+++++++. ++.|.+||..++
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 666889999999 7788888999999999999988877764 4556778999999997776654 589999999999
Q ss_pred ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE-ecCcccEEEEEec
Q 042883 546 KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT-ANRKGAIKVLVLA 596 (597)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s-~~~dg~v~iwd~~ 596 (597)
+.+..+..+ . ...++|+|+|+++++ ...++.|.+||+.
T Consensus 264 ~~~~~~~~~-----------~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 264 NILAKVAAP-----------E--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp CEEEEEECS-----------S--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEcC-----------C--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 887776642 1 256999999996555 5579999999975
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=5.2e-21 Score=198.34 Aligned_cols=237 Identities=11% Similarity=0.067 Sum_probs=179.8
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEec--ccCccCCccCCCCceEecCCCceeEEEEec----CCCCEEEEee-CCCcEE
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEF--SSVVNEPRDVHYPMVEMPTRSKLSCLSWNK----YTKNLIASSD-YDGIVT 404 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~----~~~~~l~s~~-~dg~i~ 404 (597)
+..++|+|+|++|++++.|+.|.+||+ .+. .......+...+..++|+| + ++++++++ .++.|.
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------~~~~~i~~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~ 251 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------TKVAEIKIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFA 251 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------EEEEEEECCSEEEEEEECCSTTCT-TTEEEEEEEESSEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCC--------cEEEEEecCCCcceEEeCCCcCCC-CCEEEEEEccCCeEE
Confidence 889999999999999999999999999 444 2233344566789999998 5 56666665 589999
Q ss_pred EEeCCCCeeeeEEee----------cc-ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce-eeeccCC
Q 042883 405 IWDVTTSQSVMEYEE----------HE-KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL-HVFNGHK 472 (597)
Q Consensus 405 iwd~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~ 472 (597)
|||..+++.+..+.. |. ..+.++.++|+++.++++... ++.|.+||........ ..+ .+.
T Consensus 252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-------~g~i~vvd~~~~~~l~~~~i-~~~ 323 (543)
T 1nir_A 252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-------TGKVLLVNYKDIDNLTVTSI-GAA 323 (543)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-------TTEEEEEECTTSSSCEEEEE-ECC
T ss_pred EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-------CCeEEEEEecCCCcceeEEe-ccC
Confidence 999999988887754 22 268899999966677777664 4559999998733222 133 356
Q ss_pred CceEEEEecCC-CeEEE-eeCCCcEEEEEcCCCcceeeeeC----CCCceeEEEEeec-CCEEEEEe-CCCcEEEEEccC
Q 042883 473 KAVSYVKFLSN-NELAS-ASTDSSLRLWDVKENLPLHTFRG----HTNEKNFVGLTVN-NEYIACGS-ETNEVFVYHKAI 544 (597)
Q Consensus 473 ~~v~~v~~~~~-~~l~s-~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~v~~s~~-g~~l~~~~-~d~~i~iwd~~~ 544 (597)
..+..+.|+|+ .+|++ +..+++|.+||..+++.+..+.. |.+....+ ++|+ |.+++++. .|++|.+||+.+
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 67889999999 55554 45689999999999998888874 44333233 4677 66666665 589999999988
Q ss_pred -------CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-------CcccEEEEEecC
Q 042883 545 -------SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-------RKGAIKVLVLAA 597 (597)
Q Consensus 545 -------~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-------~dg~v~iwd~~~ 597 (597)
.+.+.++.. |...+..|+|+|+|++|++++ .+++|.|||+.+
T Consensus 403 ~~~~~~~~~~v~~l~~-----------~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 403 KNHPQYAWKKVAELQG-----------QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TTCTTTBTSEEEEEEC-----------SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCchhcCeEEEEEEc-----------CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 666666653 356788899999999999987 378999999864
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.5e-21 Score=186.95 Aligned_cols=236 Identities=10% Similarity=0.065 Sum_probs=172.7
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeccc-CccCCccCCCCceEec-CCCceeEEEEecCCCCEEEEee--CC
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSS-VVNEPRDVHYPMVEMP-TRSKLSCLSWNKYTKNLIASSD--YD 400 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~~l~s~~--~d 400 (597)
+..|...|.+++|+|+|++|++++ ++.|.+||+.+ +. ....... +...+.+++|+| ++..|++++ .+
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 107 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICNNDHGISP-DGALYAISDKVEF 107 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBCSCCEECT-TSSEEEEEECTTT
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccccceEECC-CCCEEEEEEeCCC
Confidence 345788999999999999999986 88999999987 51 1111112 236788999999 788888887 33
Q ss_pred CcEEEE--eCCCCeeeeEEeeccceeEEEEeCCCCCceEE-eecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEE
Q 042883 401 GIVTIW--DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLV-SGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSY 477 (597)
Q Consensus 401 g~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 477 (597)
+.+.|| ++.++. ...+..+ ..+..++|+| ++..++ +++.+ +.+.+|++.........+..+...+.+
T Consensus 108 ~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (297)
T 2ojh_A 108 GKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRD-------QVFDIYSMDIDSGVETRLTHGEGRNDG 177 (297)
T ss_dssp SSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEET-------TEEEEEEEETTTCCEEECCCSSSCEEE
T ss_pred CcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCC-------CceEEEEEECCCCcceEcccCCCcccc
Confidence 445554 545444 3344333 3488899999 565554 66644 448999876434455666678888999
Q ss_pred EEecCC-CeEEEee-CCCcEEEEEcC-CCcceeeeeCCCCceeEEEEeecCCEEEEEeCC-----------CcEEEEEcc
Q 042883 478 VKFLSN-NELASAS-TDSSLRLWDVK-ENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET-----------NEVFVYHKA 543 (597)
Q Consensus 478 v~~~~~-~~l~s~~-~d~~v~iwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----------~~i~iwd~~ 543 (597)
+.|+|+ ..|++++ .++.++||++. .+..+..+..+...+..++|+|+|++|++++.+ +.|++||+.
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 999999 5566555 58999999987 566677777788888999999999999888765 569999998
Q ss_pred CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcc
Q 042883 544 ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKG 588 (597)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg 588 (597)
+++........ .|...+..++|+|+|++|++++.+.
T Consensus 258 ~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 258 GGNVETLFDLF---------GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCSCEEEEEEE---------ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCceeeeccC---------CCCcccccceECCCCCEEEEEEecc
Confidence 87764433321 2466789999999999998876553
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=5.5e-21 Score=187.48 Aligned_cols=242 Identities=11% Similarity=0.095 Sum_probs=165.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCC-CcEEEEecc--cCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee-CCCc
Q 042883 327 HAANIISSIEFDRDDELFASAGVS-RRIKIFEFS--SVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-YDGI 402 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d-~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~dg~ 402 (597)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++ . ............+..++|+| +++.+++++ .++.
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~ 107 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--A----LTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGN 107 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC--C----EEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC--c----eeeccccccCCCCcEEEEcC-CCCEEEEEecCCCe
Confidence 466788899999999988888876 999999997 33 0 01112222334788999999 667665554 5889
Q ss_pred EEEEeCC---CCeeeeEEeeccceeEEEEeCCCCCceEEeec-CCCcccCCCCeEEEEEccCCCccee----eecc-CCC
Q 042883 403 VTIWDVT---TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGS-DDCKVGSADHHIHYYDLRNISQPLH----VFNG-HKK 473 (597)
Q Consensus 403 i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~~~~~d~~i~i~d~~~~~~~~~----~~~~-~~~ 473 (597)
|.+||+. ....+..+.. ...+.+++|+| ++..+++++ . ++.|.+||+...+.... .+.. ...
T Consensus 108 i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 108 VSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred EEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCC-------CCEEEEEEecCCCceeeecccccccCCCC
Confidence 9999994 3344444443 34588999999 666555543 3 45599999986333221 2222 345
Q ss_pred ceEEEEecCC-CeEEE-eeCCCcEEEEEcCC--Ccc--eeeee----CC--CCceeEEEEeecCCEEEE-EeCCCcEEEE
Q 042883 474 AVSYVKFLSN-NELAS-ASTDSSLRLWDVKE--NLP--LHTFR----GH--TNEKNFVGLTVNNEYIAC-GSETNEVFVY 540 (597)
Q Consensus 474 ~v~~v~~~~~-~~l~s-~~~d~~v~iwd~~~--~~~--~~~~~----~~--~~~v~~v~~s~~g~~l~~-~~~d~~i~iw 540 (597)
.+..++|+|+ .++++ +..++.|.+||+.. ++. ...+. ++ ...+..++|+|+|++|++ +..++.|.+|
T Consensus 179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 258 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence 7889999999 54544 45889999999954 432 22222 11 234568999999988775 4578999999
Q ss_pred Ecc--CCc--cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEec
Q 042883 541 HKA--ISK--PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 541 d~~--~~~--~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
|+. ++. .+..+.. ...+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 259 d~~~~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPT------------ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSCCEEEEEEEEC------------SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEcCCCCceEEeeeecC------------CCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 998 332 2222221 22388999999999888877 68999999775
No 133
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=4.8e-21 Score=193.22 Aligned_cols=207 Identities=14% Similarity=0.094 Sum_probs=156.8
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCC--------ccCCCCceEecCCCceeEEEEecCCCCEEE----E
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEP--------RDVHYPMVEMPTRSKLSCLSWNKYTKNLIA----S 396 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~----s 396 (597)
...++.+++++++.++++++.++ |+||+........ ...........+...|++++|+| ++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEec
Confidence 34688999999999999999888 8998865321100 00011223345667899999999 688888 7
Q ss_pred eeCCCcEEEEeCCCC--------ee---eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce
Q 042883 397 SDYDGIVTIWDVTTS--------QS---VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL 465 (597)
Q Consensus 397 ~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~ 465 (597)
|+.|+.|+|||+.++ +. ...+.+|...|.+++|+|.++.+|++++.|+. |++||+++ +..+
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-------v~iwD~~~-~~~~ 185 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-------IAVLQVTE-TVKV 185 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-------EEEEEESS-SEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-------EEEEEcCC-Ccce
Confidence 889999999998654 22 34556799999999999965899999986555 99999997 4455
Q ss_pred eeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCC-------CCceeEEEEeecCCEEEEE-eCCC-
Q 042883 466 HVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGH-------TNEKNFVGLTVNNEYIACG-SETN- 535 (597)
Q Consensus 466 ~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~-~~d~- 535 (597)
....+|...|.+++|+|+ .+|++|+.||.|++||++ ++....+..| ...+.+++|++++.++++. +.||
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 555678889999999999 789999999999999998 5555555433 2378899999998877553 3443
Q ss_pred -----cEEEEEccCCc
Q 042883 536 -----EVFVYHKAISK 546 (597)
Q Consensus 536 -----~i~iwd~~~~~ 546 (597)
.+++|++...+
T Consensus 265 ~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 265 LETSPDVVMALLPKKE 280 (434)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCCceEEEEeccCC
Confidence 38999998653
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=4.7e-21 Score=208.61 Aligned_cols=241 Identities=9% Similarity=0.048 Sum_probs=179.1
Q ss_pred CCcEEEEEEcCCCCEEEEeeC-CC-----cEEEEecccCccCCccCCCCceEecCC------------------------
Q 042883 329 ANIISSIEFDRDDELFASAGV-SR-----RIKIFEFSSVVNEPRDVHYPMVEMPTR------------------------ 378 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~-d~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~------------------------ 378 (597)
...|.+++|+|||++|++++. |+ .|.+||+.++... .....+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-------LLVDSKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-------EEECGGGTC--------------------CC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-------Eccchhhcccccccccchhhhhhhhhhhccc
Confidence 457999999999999999998 88 8999999876211 0111111
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe--eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ--SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
..+.+++|+| +++.|++++. +.|++||+.++. ....+..+...+..++|+| +++.|+.++ ++.|++|
T Consensus 109 ~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~--------~~~i~~~ 177 (741)
T 2ecf_A 109 TGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR--------GRNLWVI 177 (741)
T ss_dssp EESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE--------TTEEEEE
T ss_pred cCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe--------CCcEEEE
Confidence 3478999999 7888888875 999999998873 4445667778899999999 888888776 3459999
Q ss_pred EccCCCcceeeeccCCCc----------------eEEEEecCC-CeEEEeeCCC--------------------------
Q 042883 457 DLRNISQPLHVFNGHKKA----------------VSYVKFLSN-NELASASTDS-------------------------- 493 (597)
Q Consensus 457 d~~~~~~~~~~~~~~~~~----------------v~~v~~~~~-~~l~s~~~d~-------------------------- 493 (597)
|+.+ +........+... +..++|+|+ ..|++++.|+
T Consensus 178 d~~~-g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 178 DLAS-GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ETTT-TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred ecCC-CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 9986 4444433333322 478999999 6688877665
Q ss_pred -------cEEEEEcCC-Ccceeeee--CCCCceeEEEEeecCCEEEEEeC-----CCcEEEEEccCCccccccccCCCCC
Q 042883 494 -------SLRLWDVKE-NLPLHTFR--GHTNEKNFVGLTVNNEYIACGSE-----TNEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 494 -------~v~iwd~~~-~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
.|.+||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++.........
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--- 332 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--- 332 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC---
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC---
Confidence 789999988 77554433 36678899999 99999987654 5679999999887665543211
Q ss_pred CCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 559 HVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
......+..++|+|+|+++++++.||.++||.++
T Consensus 333 ----~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 333 ----PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp ----SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ----CCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 0001145688999999999999999999999875
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.4e-19 Score=176.71 Aligned_cols=247 Identities=8% Similarity=0.069 Sum_probs=169.7
Q ss_pred CCcEEEEEEcCCCCEEEEeeC-CCcEEEEecccCccCCccCCC-CceEecCCCceeEEEEecCCCCEEEEeeCCC---cE
Q 042883 329 ANIISSIEFDRDDELFASAGV-SRRIKIFEFSSVVNEPRDVHY-PMVEMPTRSKLSCLSWNKYTKNLIASSDYDG---IV 403 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~-d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg---~i 403 (597)
...+ .++|+|+|+++++++. ++.|.+||+.++ .. ......+..+..+++|+| ++++++++..++ .|
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i 110 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-------PPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNM 110 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-------SCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEE
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-------ceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccE
Confidence 4456 9999999997766655 889999999876 11 222223344444499999 778787665553 89
Q ss_pred EEEeCCCCeeeeEEeeccceeEEEEeCCCCCc-eEEeecCCCcccCCCCe-EEEEEccCCCcce---eeeccCCCceEEE
Q 042883 404 TIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPS-MLVSGSDDCKVGSADHH-IHYYDLRNISQPL---HVFNGHKKAVSYV 478 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~~~~~d~~-i~i~d~~~~~~~~---~~~~~~~~~v~~v 478 (597)
.+||+.+++.+..+..+ ..+.+++|+| ++. ++++.. .++. |.+|++...+... .........+..+
T Consensus 111 ~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~-------~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 181 (331)
T 3u4y_A 111 QSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDR-------SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI 181 (331)
T ss_dssp EEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEE-------TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred EEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEec-------CCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence 99999999888877543 4568999999 665 444443 2345 8999987633321 1111334568999
Q ss_pred EecCC-CeE-EEeeCCCcEEEEEcCCCcc---eeeeeCCCCceeEEEEeecCCEEEEEe-CCCcEEEEEccCCccccccc
Q 042883 479 KFLSN-NEL-ASASTDSSLRLWDVKENLP---LHTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 479 ~~~~~-~~l-~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~ 552 (597)
+|+|+ .++ +++..++.|.+||+.+++. +..+..+ ..+..++|+|+|+++++++ .++.|.+||+.+++......
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence 99999 444 4555789999999999888 7777644 5668899999999776654 57889999999887622111
Q ss_pred cCCCCCCCcCcCCCcceEEEEEccCCCeEEE-ecCcccEEEEEec
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKSDSPTMLT-ANRKGAIKVLVLA 596 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s-~~~dg~v~iwd~~ 596 (597)
+....... .........++|+|+|++|++ +..++.|.|||++
T Consensus 261 ~~~~~~~~--~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 261 FGHGLLID--PRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EECCCCCC--CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cccccccC--CCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 11100000 000122366999999998765 5567799999985
No 136
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=2.3e-20 Score=183.57 Aligned_cols=237 Identities=9% Similarity=0.028 Sum_probs=170.5
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCC--ceeEEEEecCCCC-EEEEeeCCCcEEEEeCCC
Q 042883 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRS--KLSCLSWNKYTKN-LIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~i~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~ 410 (597)
.+++++++.++++++.++.|.+||+.++ .......... .+..++|+| +++ +++++..++.|.+||+.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCC
Confidence 3567888899999999999999999876 1222222222 578899999 555 455666789999999999
Q ss_pred CeeeeEEeec------cceeEEEEeCCCCCceEEeecCCC-----cccCCCCeEEEEEccCCC--cceeeeccCCCceEE
Q 042883 411 SQSVMEYEEH------EKRAWSVDFSCTEPSMLVSGSDDC-----KVGSADHHIHYYDLRNIS--QPLHVFNGHKKAVSY 477 (597)
Q Consensus 411 ~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~-----~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~ 477 (597)
++.+..+... ...+..++|+| ++.++++++.+. ..+..++.|.+||+.++. ..+..+. +...+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~ 152 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYL 152 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCC
T ss_pred CcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccc
Confidence 8887776532 22378999999 777777766330 000113569999998621 1223333 3346889
Q ss_pred EEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCC--------------------------------------------
Q 042883 478 VKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHT-------------------------------------------- 513 (597)
Q Consensus 478 v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------------------------- 513 (597)
++|+|++.+++++. .|.+||+.+++.+..+..+.
T Consensus 153 ~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 153 MRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp EEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred eeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 99999955666543 49999999887766654321
Q ss_pred ------------------------CceeEEEEee-cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcc
Q 042883 514 ------------------------NEKNFVGLTV-NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYF 568 (597)
Q Consensus 514 ------------------------~~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 568 (597)
..+..++|+| +|++++++ ++.|.+||+.+++.+..+.. ...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------------~~~ 296 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------------DHT 296 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------------SSC
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------------CCC
Confidence 1234567789 99998888 88999999999887766653 334
Q ss_pred eEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 569 ISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 569 i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+.+++|+|+|++|++++.++.|++||+++
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 67899999999999888899999999753
No 137
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=6.1e-21 Score=192.47 Aligned_cols=203 Identities=15% Similarity=0.196 Sum_probs=151.4
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC----------eeee-----EEeeccceeEEEEeCCCCCceEE----e
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS----------QSVM-----EYEEHEKRAWSVDFSCTEPSMLV----S 439 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~-----~~~~~~~~v~~~~~~~~~~~~l~----s 439 (597)
..+..+++++ .+.++++++.++ ++||+.... ..+. ....+...|++++|+| ++.+|+ +
T Consensus 37 ~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEE
T ss_pred CCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEec
Confidence 3577899999 678899998887 888874211 0011 0113456799999999 777777 6
Q ss_pred ecCCCcccCCCCeEEEEEccCC-----C--cc---eeeeccCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCccee
Q 042883 440 GSDDCKVGSADHHIHYYDLRNI-----S--QP---LHVFNGHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLH 507 (597)
Q Consensus 440 ~~~d~~~~~~d~~i~i~d~~~~-----~--~~---~~~~~~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~ 507 (597)
++. |+.|++||+.+. . ++ +..+.+|...|.+++|+|+ ..|++++.||+|++||++++..+.
T Consensus 114 gs~-------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 114 SEY-------GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp TTT-------EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred cCC-------CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence 664 555999998752 1 11 3556678999999999997 679999999999999999987777
Q ss_pred eeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE-ecC
Q 042883 508 TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT-ANR 586 (597)
Q Consensus 508 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s-~~~ 586 (597)
...+|...|++++|+|+|++|++|+.||.|++||.+ ++....+..... ....|...|.+++|++++.++++ ++.
T Consensus 187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~----~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF----YESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT----CCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc----cCCCCceeEEEEEEecCceEEEEEccC
Confidence 777888999999999999999999999999999998 444433322110 01124568999999998887755 334
Q ss_pred ccc------EEEEEec
Q 042883 587 KGA------IKVLVLA 596 (597)
Q Consensus 587 dg~------v~iwd~~ 596 (597)
||. +++|++.
T Consensus 262 dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 262 DGTLETSPDVVMALLP 277 (434)
T ss_dssp TCCSSSCCEEEEEECC
T ss_pred CCccCCCCceEEEEec
Confidence 433 8899975
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=9e-20 Score=189.02 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=175.6
Q ss_pred EcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC--CCCeee
Q 042883 337 FDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV--TTSQSV 414 (597)
Q Consensus 337 ~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~ 414 (597)
|+|++.++++++.|++|.+||..++ ...........+..++|+| ++++|++++.|+.|.+||+ .+++.+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC--------CEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc--------eEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 8899989999999999999998876 2222333222388999999 7999999999999999999 788888
Q ss_pred eEEeeccceeEEEEeCCC---CCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc----------C-CCceEEEEe
Q 042883 415 MEYEEHEKRAWSVDFSCT---EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG----------H-KKAVSYVKF 480 (597)
Q Consensus 415 ~~~~~~~~~v~~~~~~~~---~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~-~~~v~~v~~ 480 (597)
..+. +...+..++|+|. ++.++++++. .++.|.+||..+ .+++..+.. | ...+.++.+
T Consensus 216 ~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~------~~~~v~v~D~~t-~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 216 AEIK-IGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp EEEE-CCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred EEEe-cCCCcceEEeCCCcCCCCCEEEEEEc------cCCeEEEEeccc-cccceeecccCcccCccccccCCceEEEEE
Confidence 8886 4567899999981 3455555542 245599999987 667776653 2 237889999
Q ss_pred cCC-C-eEEEeeCCCcEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEE-eCCCcEEEEEccCCccccccccCC
Q 042883 481 LSN-N-ELASASTDSSLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 481 ~~~-~-~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
+|+ + .+++...++.|.+||..+.+.+. .+. +...+..++|+|+|++++++ ..++.|.+||..+++.+..+..+.
T Consensus 288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 997 3 46777789999999998866544 443 55667889999999987655 458999999999999887766432
Q ss_pred CCCCCcCcCCCcceEEEEEccC-CCeEEEec-CcccEEEEEecC
Q 042883 556 DADHVDDDMGSYFISAVCWKSD-SPTMLTAN-RKGAIKVLVLAA 597 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~-~~~l~s~~-~dg~v~iwd~~~ 597 (597)
. .|.+....+ ++|+ |.+++++. .|++|.|||+++
T Consensus 367 ~-------ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 367 T-------PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp S-------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred C-------CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 1 133323333 4676 66677765 689999999864
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=6.7e-20 Score=179.23 Aligned_cols=229 Identities=7% Similarity=0.017 Sum_probs=165.4
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCC---ceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRS---KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE 418 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 418 (597)
+++++++.++.|.+||+.++ .......... .+..++|+|++..+++++..++.|.+||+.+++.+..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 47889999999999999876 2222222233 578899999433455666778899999999988877665
Q ss_pred e-c----cceeEEEEeCCCCCceEEeecCCC-cc--cC--CCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEE
Q 042883 419 E-H----EKRAWSVDFSCTEPSMLVSGSDDC-KV--GS--ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA 487 (597)
Q Consensus 419 ~-~----~~~v~~~~~~~~~~~~l~s~~~d~-~~--~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~ 487 (597)
. + ...+..++|+| ++..+++++... .. .. .++.|.+||+.+ ++.+..+.. ...+..++|+|+ .+|+
T Consensus 74 ~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLY 150 (337)
T ss_dssp CCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEE
T ss_pred cCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEE
Confidence 3 1 22678899999 666666553100 00 00 246699999986 555555553 456788999999 5566
Q ss_pred EeeCCCcEEEEEcCCCcceeeeeCCC------------------------------------------------------
Q 042883 488 SASTDSSLRLWDVKENLPLHTFRGHT------------------------------------------------------ 513 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~~~~~~~------------------------------------------------------ 513 (597)
++ ++.|.+||+.+++.+..+..+.
T Consensus 151 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 151 GL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp EE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred Ee--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 66 6889999998776554433211
Q ss_pred ------------CceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeE
Q 042883 514 ------------NEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTM 581 (597)
Q Consensus 514 ------------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 581 (597)
..+.+++|+|+|++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL------------PHSYYSVNVSTDGSTV 294 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC------------SSCCCEEEECTTSCEE
T ss_pred CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC------------CCceeeEEECCCCCEE
Confidence 123468999999998888 69999999998887766653 3457899999999999
Q ss_pred EEecCcccEEEEEecC
Q 042883 582 LTANRKGAIKVLVLAA 597 (597)
Q Consensus 582 ~s~~~dg~v~iwd~~~ 597 (597)
++++.++.|++||+.+
T Consensus 295 ~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 295 WLGGALGDLAAYDAET 310 (337)
T ss_dssp EEESBSSEEEEEETTT
T ss_pred EEEcCCCcEEEEECcC
Confidence 9999999999999753
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=6.5e-20 Score=175.53 Aligned_cols=223 Identities=7% Similarity=0.046 Sum_probs=163.4
Q ss_pred EeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC-CeeeeEEeec-cce
Q 042883 346 SAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT-SQSVMEYEEH-EKR 423 (597)
Q Consensus 346 t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~ 423 (597)
.++.++.|++||+.++ .......|...|.+++|+| ++.+|++++ ++.|++||+.+ ++.......+ ...
T Consensus 17 ~~~~~~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--------KMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp -CCCCEEEEEEETTTT--------EEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred CCCcceeEEEEeCCCC--------ceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence 3567899999999876 3334556788999999999 788888876 78999999998 7776665555 367
Q ss_pred eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEE-EeeCCCcEEEEEcC
Q 042883 424 AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA-SASTDSSLRLWDVK 501 (597)
Q Consensus 424 v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~-s~~~d~~v~iwd~~ 501 (597)
+.+++|+| ++.++++++.+. ++.+.||.+.........+..+ ..+..++|+|+ ..|+ +++.++.++||++.
T Consensus 87 ~~~~~~sp-dg~~l~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~ 159 (297)
T 2ojh_A 87 NNDHGISP-DGALYAISDKVE-----FGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD 159 (297)
T ss_dssp CSCCEECT-TSSEEEEEECTT-----TSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ccceEECC-CCCEEEEEEeCC-----CCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence 89999999 777777776332 1224455443223334444433 34889999999 5555 78889999999964
Q ss_pred C-CcceeeeeCCCCceeEEEEeecCCEEEEEe-CCCcEEEEEcc-CCccccccccCCCCCCCcCcCCCcceEEEEEccCC
Q 042883 502 E-NLPLHTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKA-ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDS 578 (597)
Q Consensus 502 ~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~ 578 (597)
. +.....+..+...+.+++|+|+|++|++++ .++.+.||++. .+.....+. .|...+..++|+|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 160 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-----------DSAYGDWFPHPSPSG 228 (297)
T ss_dssp TTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-----------CCSEEEEEEEECTTS
T ss_pred CCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-----------cCCcccCCeEECCCC
Confidence 3 334556667778899999999999887766 58999999986 343333332 136679999999999
Q ss_pred CeEEEecCc-----------ccEEEEEec
Q 042883 579 PTMLTANRK-----------GAIKVLVLA 596 (597)
Q Consensus 579 ~~l~s~~~d-----------g~v~iwd~~ 596 (597)
++|++++.+ +.|++||+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 999888765 569999975
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=2.7e-19 Score=175.81 Aligned_cols=243 Identities=9% Similarity=0.086 Sum_probs=161.9
Q ss_pred CCCcEEEEEEcCCCCEEEEeeC---CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee-CCCcE
Q 042883 328 AANIISSIEFDRDDELFASAGV---SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-YDGIV 403 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~dg~i 403 (597)
+...+..++|+|+|+ |++++. ++.|.+|++.++.. ........+...+..++|+| ++++|++++ .++.|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v 110 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----HKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTA 110 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----EEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----EEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEE
Confidence 445677899999999 555543 68999999966510 01111123566788999999 677777776 67899
Q ss_pred EEEeCCC-C--eeeeEEeec---------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce--eeec
Q 042883 404 TIWDVTT-S--QSVMEYEEH---------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL--HVFN 469 (597)
Q Consensus 404 ~iwd~~~-~--~~~~~~~~~---------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--~~~~ 469 (597)
.+|++.. + ..+..+... ...+.+++|+| ++.++++... ++.|.+||+...+... ..+.
T Consensus 111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~-------~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLG-------SDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETT-------TTEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCC-------CCEEEEEEECCCCcEEEeeeEE
Confidence 9999963 2 223333211 12488899999 6666666553 4459999998424322 1122
Q ss_pred c-CCCceEEEEecCC-CeEEE-eeCCCcEEEEEcCC--Ccc--eeeeeCCC------CceeEEEEeecCCEEE-EEeCCC
Q 042883 470 G-HKKAVSYVKFLSN-NELAS-ASTDSSLRLWDVKE--NLP--LHTFRGHT------NEKNFVGLTVNNEYIA-CGSETN 535 (597)
Q Consensus 470 ~-~~~~v~~v~~~~~-~~l~s-~~~d~~v~iwd~~~--~~~--~~~~~~~~------~~v~~v~~s~~g~~l~-~~~~d~ 535 (597)
. ....+..++|+|+ .++++ +..++.|.+||+.. ++. +..+.... ..+..++|+|||++|+ ++..++
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 2 2346788999999 43544 56788999999874 432 22332222 3478899999999875 455689
Q ss_pred cEEEEEccCC---ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC-cccEEEEEec
Q 042883 536 EVFVYHKAIS---KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR-KGAIKVLVLA 596 (597)
Q Consensus 536 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~-dg~v~iwd~~ 596 (597)
.|.+|++... +.+..+.. +...+.+++|+|+|++|++++. ++.|.+|+++
T Consensus 263 ~v~v~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQQIST-----------EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEECGGGCEEEEEEEEC-----------SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEECCCCcEEEeEEEec-----------CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9999998732 22222221 2445789999999998887764 5899999775
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=7.6e-19 Score=171.38 Aligned_cols=233 Identities=10% Similarity=0.072 Sum_probs=163.6
Q ss_pred EEcCCCCE-EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEE-eeCCCcEEEEeCCCCee
Q 042883 336 EFDRDDEL-FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIAS-SDYDGIVTIWDVTTSQS 413 (597)
Q Consensus 336 ~~~~~~~~-l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~ 413 (597)
.|.+++.+ +++++.++.|.+||+.++ ........+...+ +++|+| +++++++ +..++.|.+||+.++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~-------~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL-------EILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC-------CEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc-------ceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCce
Confidence 45665554 677788999999999876 1111222234456 999999 5665554 44588999999999887
Q ss_pred -eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE-EEee
Q 042883 414 -VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL-ASAS 490 (597)
Q Consensus 414 -~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l-~s~~ 490 (597)
...+..+..+..+++|+| ++.+++++..++ ..+.|.+||+.+ +..+..+.. ...+..++|+|+ .++ +++.
T Consensus 75 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~----~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 75 KVVAIQEGQSSMADVDITP-DDQFAVTVTGLN----HPFNMQSYSFLK-NKFISTIPI-PYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp EEEEEEECSSCCCCEEECT-TSSEEEECCCSS----SSCEEEEEETTT-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred eEEecccCCCCccceEECC-CCCEEEEecCCC----CcccEEEEECCC-CCeEEEEEC-CCCccceEECCCCCEEEEEec
Confidence 777766666665599999 777777544321 122699999987 566666654 445689999999 444 4555
Q ss_pred CCCc-EEEEEcCCCccee----eeeCCCCceeEEEEeecCCEEEEE-eCCCcEEEEEccCCcc---ccccccCCCCCCCc
Q 042883 491 TDSS-LRLWDVKENLPLH----TFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKAISKP---AASHRFGSDADHVD 561 (597)
Q Consensus 491 ~d~~-v~iwd~~~~~~~~----~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~ 561 (597)
.++. |.+|++.....+. ........+..++|+|+|++++++ ..++.|.+||+.+++. +..+..
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-------- 219 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-------- 219 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--------
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--------
Confidence 6688 9999987644331 222334567899999999966554 4689999999998887 555542
Q ss_pred CcCCCcceEEEEEccCCCeEEEe-cCcccEEEEEec
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTA-NRKGAIKVLVLA 596 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~-~~dg~v~iwd~~ 596 (597)
...+..++|+|+|++|+++ ..++.|.+||+.
T Consensus 220 ----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 220 ----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp ----SSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred ----CCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 4567889999999977654 468889999975
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=1.7e-18 Score=170.45 Aligned_cols=227 Identities=8% Similarity=0.005 Sum_probs=169.5
Q ss_pred CCcEEEEEEcCCCCEEEE-eeCCCcEEEEecccCccCCccCCCCceEec-C---------CCceeEEEEecCCCCEEEEe
Q 042883 329 ANIISSIEFDRDDELFAS-AGVSRRIKIFEFSSVVNEPRDVHYPMVEMP-T---------RSKLSCLSWNKYTKNLIASS 397 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~---------~~~i~~v~~~~~~~~~l~s~ 397 (597)
...+..++|+|+|+++++ +..++.|.+||..++. ...... + ...+.+++|+| +++.++++
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~ 158 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYIS 158 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECC-CCCEEEEE
Confidence 345778999999996554 4557999999998761 111111 1 11378899999 56666655
Q ss_pred e--CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc----C
Q 042883 398 D--YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG----H 471 (597)
Q Consensus 398 ~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~----~ 471 (597)
+ .++.|.+||+.+++.+..+..+...+..++|+| ++..+++++. ++.|.+||+.+ ++.+..+.. +
T Consensus 159 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~-------~~~i~~~d~~~-~~~~~~~~~~~~~~ 229 (353)
T 3vgz_A 159 GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNA-------DGELITIDTAD-NKILSRKKLLDDGK 229 (353)
T ss_dssp EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECT-------TSEEEEEETTT-TEEEEEEECCCSSS
T ss_pred ecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcC-------CCeEEEEECCC-CeEEEEEEcCCCCC
Confidence 4 478899999999998888875666688999999 7777776664 45599999987 555555543 4
Q ss_pred CCceEEEEecCC-CeEEEee-CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe-CCCcEEEEEccCCccc
Q 042883 472 KKAVSYVKFLSN-NELASAS-TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAISKPA 548 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~ 548 (597)
...+..++|+|+ +.+++++ .++.|.+||+.+++.+..+.... ...++|+|+|+++++++ .++.|.+||..+++.+
T Consensus 230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 566888999999 5555555 45899999999999888877533 25799999999666555 6899999999999887
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
..+.. ...+.+++|+|+|++|+++..+
T Consensus 308 ~~~~~------------~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 308 KTFDT------------PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEC------------CSEEEEEEECTTSCEEEEEEEC
T ss_pred EEEec------------CCCCCeEEEcCCCCEEEEEEcc
Confidence 77654 4468999999999977665444
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=7e-19 Score=172.40 Aligned_cols=236 Identities=9% Similarity=0.094 Sum_probs=158.0
Q ss_pred EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC-CcEEEEeCC--CCe--eeeEE
Q 042883 343 LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD-GIVTIWDVT--TSQ--SVMEY 417 (597)
Q Consensus 343 ~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~--~~~~~ 417 (597)
.+++++.++.|++|++... . .........+...+.+++|+| ++++|++++.+ +.|.+|++. ++. .+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHE-G----ALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTT-S----CEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCC-C----cEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 3444477999999998632 0 012233345677899999999 67877777766 999999997 444 33444
Q ss_pred eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC--CcceeeeccCCCceEEEEecCC-CeEEEee-CCC
Q 042883 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI--SQPLHVFNGHKKAVSYVKFLSN-NELASAS-TDS 493 (597)
Q Consensus 418 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~ 493 (597)
..+ ..+..++|+| ++.++++++. .++.|.+||+..+ ...+..+.. ...+.+++|+|+ ..+++++ .++
T Consensus 81 ~~~-~~~~~~~~s~-dg~~l~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~ 151 (343)
T 1ri6_A 81 ALP-GSLTHISTDH-QGQFVFVGSY------NAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQD 151 (343)
T ss_dssp ECS-SCCSEEEECT-TSSEEEEEET------TTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGT
T ss_pred ccC-CCCcEEEEcC-CCCEEEEEec------CCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCC
Confidence 433 3789999999 6665554432 2455999999421 233444443 345889999999 5677666 899
Q ss_pred cEEEEEcCC-Cccee----eeeC-CCCceeEEEEeecCCEEEEEe-CCCcEEEEEccC--CccccccccCCCCCCCcCcC
Q 042883 494 SLRLWDVKE-NLPLH----TFRG-HTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAI--SKPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 494 ~v~iwd~~~-~~~~~----~~~~-~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~ 564 (597)
.|.+||+.+ ++... .+.. ....+..++|+|+|+++++++ .++.|.+|++.. ++............ ...
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~---~~~ 228 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE---NFS 228 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT---TCC
T ss_pred EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc---ccc
Confidence 999999987 54432 2222 344678899999999776554 789999999954 43321111110000 011
Q ss_pred CCcceEEEEEccCCCeEE-EecCcccEEEEEec
Q 042883 565 GSYFISAVCWKSDSPTML-TANRKGAIKVLVLA 596 (597)
Q Consensus 565 h~~~i~~v~~~~~~~~l~-s~~~dg~v~iwd~~ 596 (597)
+...+..++|+|+|++|+ ++..++.|.+||++
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 144677899999998877 55689999999986
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=3.3e-20 Score=201.44 Aligned_cols=234 Identities=9% Similarity=0.057 Sum_probs=167.7
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCC---ceeEEEEecCCCCEEEEeeCC-------
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRS---KLSCLSWNKYTKNLIASSDYD------- 400 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~~~~~~~~l~s~~~d------- 400 (597)
.+.+++|+|||+++++ +.||+|++||+.++ ........+.. .|.+++|+| +++.|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g-------~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN-------TSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC-------CCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC-------cEEEEeccccccccccceEEECC-CCCEEEEEecCccceeec
Confidence 3667899999997766 67999999999887 11122222322 489999999 78888888764
Q ss_pred --CcEEEEeCCCCeeeeEEe---eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCc-
Q 042883 401 --GIVTIWDVTTSQSVMEYE---EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKA- 474 (597)
Q Consensus 401 --g~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~- 474 (597)
+.|.+||+.+++. ..+. ++...+..++|+| +++.|+.++. +.|++||+.+ +........+...
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~--------~~i~~~~~~~-g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE--------NNIYYCAHVG-KQAIRVVSTGKEGV 157 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET--------TEEEEESSSS-SCCEEEECCCBTTT
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC--------CeEEEEECCC-CceEEEecCCCCCc
Confidence 7788999988765 3332 3444588999999 8888887763 4599999987 5555444443332
Q ss_pred -----------------eEEEEecCC-CeEEEeeCCC----------------------------------cEEEEEcCC
Q 042883 475 -----------------VSYVKFLSN-NELASASTDS----------------------------------SLRLWDVKE 502 (597)
Q Consensus 475 -----------------v~~v~~~~~-~~l~s~~~d~----------------------------------~v~iwd~~~ 502 (597)
+.+++|+|+ ..|++++.|+ .|++||+.+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 378999999 6677776543 799999998
Q ss_pred CcceeeeeCC------CCceeEEEEeecCCEEEEEeC----CCcEEEEEccCCccccccccCCCCCCCcCcCCCcce---
Q 042883 503 NLPLHTFRGH------TNEKNFVGLTVNNEYIACGSE----TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI--- 569 (597)
Q Consensus 503 ~~~~~~~~~~------~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i--- 569 (597)
++....+..+ ...+..++|+|||++|++... +..|++||+.+++........ |...+
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----------~~~~~~~~ 307 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE----------SEAWLHRQ 307 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE----------CSSCCCCC
T ss_pred CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec----------cCCEEecc
Confidence 8765666544 567889999999998876643 357999999988765544321 12233
Q ss_pred -EEEEEccCCCeEEE--ecCcc------cEEEEE
Q 042883 570 -SAVCWKSDSPTMLT--ANRKG------AIKVLV 594 (597)
Q Consensus 570 -~~v~~~~~~~~l~s--~~~dg------~v~iwd 594 (597)
..++|+|+|++|+. +..++ .|.+||
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 37899999998775 44666 455555
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=5.6e-20 Score=194.08 Aligned_cols=230 Identities=11% Similarity=0.022 Sum_probs=163.5
Q ss_pred CCcEEEEEEcCCCCEEEEeeC-CCcEEEEecccCccCCccCCCCceEecCC-CceeEEEEecCCCCEEEEeeC---CCcE
Q 042883 329 ANIISSIEFDRDDELFASAGV-SRRIKIFEFSSVVNEPRDVHYPMVEMPTR-SKLSCLSWNKYTKNLIASSDY---DGIV 403 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~~l~s~~~---dg~i 403 (597)
..+|++++|+|||+.||+++. ||++.||++.++ .......+. ..+..++|+| + .++++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------~~~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------ETVKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--------EEEECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC--------CcEeeecccccccccccCCC-C-eEEEEeccCCCCcce
Confidence 346999999999999999887 999999998654 222222344 5789999999 4 77777764 4555
Q ss_pred EEEeCCC---CeeeeEEeeccceeEEEEeCCCCCc-eEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 404 TIWDVTT---SQSVMEYEEHEKRAWSVDFSCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 404 ~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
.||.+.. +... .+... ..+...+|+|++.. ++++++.++ +.+||+.+ +....... +.. .+++
T Consensus 91 ~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~--------~~l~d~~~-g~~~~l~~-~~~--~~~~ 156 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR--------VALYALDG-GGLRELAR-LPG--FGFV 156 (582)
T ss_dssp EEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC--------EEEEEEET-TEEEEEEE-ESS--CEEE
T ss_pred EEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC--------ceEEEccC-CcEEEeec-CCC--ceEE
Confidence 6654432 2222 33222 22345577774433 444444332 56999986 44433333 333 7899
Q ss_pred ecCC-CeEEEeeCC----CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC--cEEEEEccCCccccccc
Q 042883 480 FLSN-NELASASTD----SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN--EVFVYHKAISKPAASHR 552 (597)
Q Consensus 480 ~~~~-~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~--~i~iwd~~~~~~~~~~~ 552 (597)
|+|+ ..|++++.+ +.|++||+.+++.. .+..|...+..++|+|||++|++++.++ .|++||+.+++.. ...
T Consensus 157 ~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~ 234 (582)
T 3o4h_A 157 SDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE 234 (582)
T ss_dssp EEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred ECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence 9999 667767766 77999999887754 6677888899999999999999888888 8999999988776 322
Q ss_pred cCCCCCCCcCcCCCcceEEEE--------EccCCCeEEEecCcccEEEEEe
Q 042883 553 FGSDADHVDDDMGSYFISAVC--------WKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~--------~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.|...+..++ |+|||.++++++.||.++||++
T Consensus 235 -----------~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 235 -----------LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -----------CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -----------CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 1345566666 9999988899999999999985
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=4e-19 Score=193.43 Aligned_cols=244 Identities=8% Similarity=0.020 Sum_probs=172.3
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
.|.+++|+|||++|++++. +.|.+||+.++.. ........+...+..++|+| +++.|+.++ ++.|++||+.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCC
Confidence 4788999999999999886 9999999986510 01122334567799999999 788888887 56999999988
Q ss_pred CeeeeEEeeccce----------------eEEEEeCCCCCceEEeecCCCcc------------------------cCCC
Q 042883 411 SQSVMEYEEHEKR----------------AWSVDFSCTEPSMLVSGSDDCKV------------------------GSAD 450 (597)
Q Consensus 411 ~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~~~d~~~------------------------~~~d 450 (597)
+........+... +.+++|+| ++..|++++.|+.. |..+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 8765544333322 47899999 78877777654310 1111
Q ss_pred --CeEEEEEccCCCcceeeec--cCCCceEEEEecCC-CeEEEeeC-----CCcEEEEEcCCCcceeeeeCCCC----ce
Q 042883 451 --HHIHYYDLRNISQPLHVFN--GHKKAVSYVKFLSN-NELASAST-----DSSLRLWDVKENLPLHTFRGHTN----EK 516 (597)
Q Consensus 451 --~~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~-~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~----~v 516 (597)
..|++||+.+.+....... .|...+..++| |+ ..|++++. +..|++||+.+++....+..+.. .+
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 1678888875122322222 47778999999 99 66665543 56799999999887776665443 44
Q ss_pred eEEEEeecCCEEEEEeCCCcEEEEEcc-CCccccccccCCCCCCCcCcCCCcceEEE-EEccCCCeEEE-ecCcc--cEE
Q 042883 517 NFVGLTVNNEYIACGSETNEVFVYHKA-ISKPAASHRFGSDADHVDDDMGSYFISAV-CWKSDSPTMLT-ANRKG--AIK 591 (597)
Q Consensus 517 ~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~v-~~~~~~~~l~s-~~~dg--~v~ 591 (597)
..++|+|||+++++++.||.++||.+. .++ ...+. .|...|..+ .|+|+|++|+. ++.++ .++
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-----------~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~ 407 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT-----------HGNWSVDELLAVDEKAGLAYFRAGIESARESQ 407 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC-----------CSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee-----------ecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence 689999999999999999988888775 333 33332 135667787 59999987754 55555 899
Q ss_pred EEEec
Q 042883 592 VLVLA 596 (597)
Q Consensus 592 iwd~~ 596 (597)
||+++
T Consensus 408 l~~~~ 412 (741)
T 2ecf_A 408 IYAVP 412 (741)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99975
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=3.6e-18 Score=168.75 Aligned_cols=245 Identities=9% Similarity=0.082 Sum_probs=160.4
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCC----CcEEEEecccCccCCccCCCCceE-ecCCCceeEEEEecCCCCEEEEe-eCCC
Q 042883 328 AANIISSIEFDRDDELFASAGVS----RRIKIFEFSSVVNEPRDVHYPMVE-MPTRSKLSCLSWNKYTKNLIASS-DYDG 401 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d----~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~~l~s~-~~dg 401 (597)
+...+..++|+|+|++|++++.+ +.|.+|++....... ..... ..+...+..+++ ++++|+++ ..++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~----~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~ 120 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL----HLLNTQKTMGADPCYLTT---NGKNIVTANYSGG 120 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE----EEEEEEECSSSCEEEEEE---CSSEEEEEETTTT
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE----EEeeEeccCCCCcEEEEE---CCCEEEEEECCCC
Confidence 55667789999999999998875 799999987531110 11111 123445667777 35555555 4688
Q ss_pred cEEEEeCCCCeeeeEE------ee--------ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc----
Q 042883 402 IVTIWDVTTSQSVMEY------EE--------HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ---- 463 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~---- 463 (597)
.|.+|++.....+..+ .+ +...+.+++|+| ++.++++++. .++.|.+|++.....
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~------~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDL------GTDQIHKFNINPNANADNK 193 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEET------TTTEEEEEEECTTCCTTTC
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeC------CCCEEEEEEEcCCCCcccc
Confidence 9999999754332211 11 122357899999 6664444332 245599999876332
Q ss_pred --ce------eeeccCCCceEEEEecCC-CeEEEee-CCCcEEEEEcCCCcc--eeeee---CCCCceeEEEEeecCCEE
Q 042883 464 --PL------HVFNGHKKAVSYVKFLSN-NELASAS-TDSSLRLWDVKENLP--LHTFR---GHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 464 --~~------~~~~~~~~~v~~v~~~~~-~~l~s~~-~d~~v~iwd~~~~~~--~~~~~---~~~~~v~~v~~s~~g~~l 528 (597)
.. .....+...+..++|+|+ .++++++ .++.|.+||+.++.. +..+. .+...+..++|+|||++|
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l 273 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL 273 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE
Confidence 11 112234556789999999 4566665 689999999987643 22232 233456799999999988
Q ss_pred EEEeC--CCcEEEEEcc--CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEec
Q 042883 529 ACGSE--TNEVFVYHKA--ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 529 ~~~~~--d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
+++.. ++.|.+|++. +++......... ...+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 274 ~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~----------g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 274 YASNRLKADGVAIFKVDETNGTLTKVGYQLT----------GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEECSSSCEEEEEEECTTTCCEEEEEEEEC----------SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCCEEEEEEEcCCCCcEEEeeEecC----------CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 77665 4899999986 344322221110 23577899999999888876 67899998775
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=7.3e-19 Score=190.20 Aligned_cols=253 Identities=12% Similarity=0.073 Sum_probs=172.5
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEeccc-----CccCCc-cCCCCceEe------cCCCceeEEEEecCCCCE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSS-----VVNEPR-DVHYPMVEM------PTRSKLSCLSWNKYTKNL 393 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~-----~~~~~~-~~~~~~~~~------~~~~~i~~v~~~~~~~~~ 393 (597)
..+...+.+++|+|||++|+++ .++.|++|++.+ +..... ......... .+...+.+++|+| +++.
T Consensus 117 ~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~ 194 (706)
T 2z3z_A 117 FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSC 194 (706)
T ss_dssp ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSE
T ss_pred cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCE
Confidence 3456678889999999999985 689999999987 511100 000000000 0012258899999 7888
Q ss_pred EEEee---------------------------------CCCcEEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEE
Q 042883 394 IASSD---------------------------------YDGIVTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLV 438 (597)
Q Consensus 394 l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~ 438 (597)
|++++ .++.|++||+.+++...... .+...+..++|+| ++..++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~ 273 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILY 273 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEE
Confidence 88876 34679999999887654432 4667899999999 777777
Q ss_pred eecCCCcccCCCCeEEEEEccCCCcceeeec-cCCC---ceEEEEecC--C-CeEEEeeCCCcEEEEEcC-CCcceeeee
Q 042883 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKK---AVSYVKFLS--N-NELASASTDSSLRLWDVK-ENLPLHTFR 510 (597)
Q Consensus 439 s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~---~v~~v~~~~--~-~~l~s~~~d~~v~iwd~~-~~~~~~~~~ 510 (597)
+++.++. .....|++||+.++........ .+.. .+..++|+| + .++++++.|+.++||++. ++..+..+.
T Consensus 274 ~~~~~~~--~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 274 VAEVNRA--QNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp EEEECTT--SCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred EEEeCCC--CCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence 7654431 1234699999987313222222 1222 246789999 8 567778889999999886 567777787
Q ss_pred CCCCceeE-EEEeecCCEEEEEeC-CC----cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe
Q 042883 511 GHTNEKNF-VGLTVNNEYIACGSE-TN----EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 511 ~~~~~v~~-v~~s~~g~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
.+...+.. ++|+|+|+.|+.++. ++ .|+.||+.+++.. .+. |...+.+++|+|+|++|+.+
T Consensus 352 ~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------------~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------------PESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------------CSSSEEEEEECTTSSEEEEE
T ss_pred CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------------CCCceEEEEECCCCCEEEEE
Confidence 77777776 799999987766544 44 6777777665532 221 24568899999999988775
Q ss_pred cCc----ccEEEEEec
Q 042883 585 NRK----GAIKVLVLA 596 (597)
Q Consensus 585 ~~d----g~v~iwd~~ 596 (597)
..+ +.|++||++
T Consensus 419 ~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 419 FQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EECSSCSCEEEEEESS
T ss_pred ecCCCCCcEEEEEECC
Confidence 433 569999975
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=1.3e-18 Score=188.92 Aligned_cols=246 Identities=9% Similarity=0.002 Sum_probs=166.1
Q ss_pred cEEEEEEcCCCCEEEEeeCC---------CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 331 IISSIEFDRDDELFASAGVS---------RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
.|.+++|||||++|++++.+ +.|.+||+.++... .......+...+..++|+| +++.|+.++. +
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~ 134 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-----SLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-N 134 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-----ECCCTTCCSCCCSBCCBCS-STTCEEEEET-T
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-----eccCCccccccccccEECC-CCCEEEEEEC-C
Confidence 48999999999999998764 78889999876210 0001112334588899999 7888888875 7
Q ss_pred cEEEEeCCCCeeeeEEeeccce------------------eEEEEeCCCCCceEEeecCCCc-c----------------
Q 042883 402 IVTIWDVTTSQSVMEYEEHEKR------------------AWSVDFSCTEPSMLVSGSDDCK-V---------------- 446 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~l~s~~~d~~-~---------------- 446 (597)
.|++||+.++........+... +.+++|+| +++.|++++.|+. +
T Consensus 135 ~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 9999999888776555443332 37899999 7887777764421 0
Q ss_pred --------c--CCCCeEEEEEccCCCcceeeeccC------CCceEEEEecCCCe-EEEee----CCCcEEEEEcCCCcc
Q 042883 447 --------G--SADHHIHYYDLRNISQPLHVFNGH------KKAVSYVKFLSNNE-LASAS----TDSSLRLWDVKENLP 505 (597)
Q Consensus 447 --------~--~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~v~~~~~~~-l~s~~----~d~~v~iwd~~~~~~ 505 (597)
| ..+..|++||+.+ +.....+..+ ...+..++|+|++. +++.+ .+..|++||+.+++.
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred eeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 0 1123799999987 4444445443 56789999999965 44443 235799999998887
Q ss_pred eeeeeC-CCCce----eEEEEeecCCEEEE--EeCCC------cEEEEE-ccCCcc--ccccccCCCCCCCcCcCCCcce
Q 042883 506 LHTFRG-HTNEK----NFVGLTVNNEYIAC--GSETN------EVFVYH-KAISKP--AASHRFGSDADHVDDDMGSYFI 569 (597)
Q Consensus 506 ~~~~~~-~~~~v----~~v~~s~~g~~l~~--~~~d~------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~h~~~i 569 (597)
...+.. +...+ ..++|+|||+.|+. +..++ .|++|| ...+.. ...+..+ ...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-----------~~~~ 361 (723)
T 1xfd_A 293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-----------DWDV 361 (723)
T ss_dssp EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-----------SSCE
T ss_pred eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-----------CeEE
Confidence 665543 33333 37899999997664 44566 566777 334431 2222211 2334
Q ss_pred EE-EEEccCCCeEEEecCc---ccEEEEEec
Q 042883 570 SA-VCWKSDSPTMLTANRK---GAIKVLVLA 596 (597)
Q Consensus 570 ~~-v~~~~~~~~l~s~~~d---g~v~iwd~~ 596 (597)
.. ++|+|+|++|+..+.+ +.++||+++
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 44 6999999998765544 789999985
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=1.5e-18 Score=187.69 Aligned_cols=241 Identities=11% Similarity=0.049 Sum_probs=168.3
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
..|.+++|+|| ..++.+. ++.|++||+.++ .......+...+.+++|+| +++.|+++ .++.|++||+.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR--------KVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT--------EEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCC--------ceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecC
Confidence 56999999999 6666554 699999999876 2233344566788999999 78888885 57999999998
Q ss_pred C-----CeeeeEEeeccce--------------eEEEEeCCCCCceEEeecCCCc-c-----------------------
Q 042883 410 T-----SQSVMEYEEHEKR--------------AWSVDFSCTEPSMLVSGSDDCK-V----------------------- 446 (597)
Q Consensus 410 ~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~s~~~d~~-~----------------------- 446 (597)
+ ++.......+... +.++.|+| ++..|++++.|.. +
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~ 228 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA 228 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence 8 7665444333332 48999999 7888877763211 0
Q ss_pred --cCCCCeEEEEEccCCCcceeee--ccCCCceEEEEecCC-CeEEEeeCCC-----cEEEEEcCCCcceeeee--CCCC
Q 042883 447 --GSADHHIHYYDLRNISQPLHVF--NGHKKAVSYVKFLSN-NELASASTDS-----SLRLWDVKENLPLHTFR--GHTN 514 (597)
Q Consensus 447 --~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~-~~l~s~~~d~-----~v~iwd~~~~~~~~~~~--~~~~ 514 (597)
...+..|++||+.+ +...... ..|...+..++|+|+ ..|++++.++ .|.+||+.+++....+. .+..
T Consensus 229 g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 229 GTPSHHVTVGIYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp TSCCCEEEEEEEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred CCCCCeeEEEEEECCC-CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 11346799999986 4433332 246678999999999 5688877665 89999999884443332 1222
Q ss_pred ---ceeEEEEee--cCCEEEEEeCCCcEEEEEcc-CCccccccccCCCCCCCcCcCCCcceEE-EEEccCCCeEEEec-C
Q 042883 515 ---EKNFVGLTV--NNEYIACGSETNEVFVYHKA-ISKPAASHRFGSDADHVDDDMGSYFISA-VCWKSDSPTMLTAN-R 586 (597)
Q Consensus 515 ---~v~~v~~s~--~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~-v~~~~~~~~l~s~~-~ 586 (597)
.+..++|+| ||+++++++.||.++||++. +++.+..+.. |...+.. ++|+|+|+.|+.++ .
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~-----------~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK-----------GEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC-----------SSSCEEEEEEECTTSSEEEEEESS
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC-----------CCeEEEeeeEEcCCCCEEEEEecC
Confidence 246789999 99999999999999999886 4544444432 2556776 79999999876644 4
Q ss_pred cc--cEEEEEe
Q 042883 587 KG--AIKVLVL 595 (597)
Q Consensus 587 dg--~v~iwd~ 595 (597)
++ .+.||.+
T Consensus 377 ~~~~~~~l~~~ 387 (706)
T 2z3z_A 377 ASPLERHFYCI 387 (706)
T ss_dssp SCTTCBEEEEE
T ss_pred CCCceEEEEEE
Confidence 44 2444443
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.80 E-value=2.2e-18 Score=194.08 Aligned_cols=236 Identities=12% Similarity=0.094 Sum_probs=180.6
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.+|...+.++.|+++ .++++++.++.+.||.+..... .. ....+...+..++|+| ++..|+.+. ++.|++
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~------~~-~~l~~~~~~~~~~~Sp-DG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK------DL-RKHTSFTDYYPRHLNT-DGRRILFSK-GGSIYI 269 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC------SC-EECCCCCSSCEEEEEE-SSSCEEEEE-TTEEEE
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC------cc-eEecCCCCcceeeEcC-CCCEEEEEe-CCEEEE
Confidence 578899999999988 6677788889999998764311 11 1112223466789999 677777774 899999
Q ss_pred EeCCCCeeeeEEee-----------ccceeEEEEeC-CCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCC
Q 042883 406 WDVTTSQSVMEYEE-----------HEKRAWSVDFS-CTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK 473 (597)
Q Consensus 406 wd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 473 (597)
||+.... +..+.+ |...+.+++|+ | ++..+++++ ++.|++|++.. +. ...+..|..
T Consensus 270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~--------~~~i~~~~~~~-~~-~~~~~~~~~ 337 (1045)
T 1k32_A 270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS--------RGQAFIQDVSG-TY-VLKVPEPLR 337 (1045)
T ss_dssp ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE--------TTEEEEECTTS-SB-EEECSCCSC
T ss_pred ecCCceE-eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE--------cCEEEEEcCCC-Cc-eEEccCCCc
Confidence 9985443 334443 34478999999 9 888887776 34599999875 33 444566777
Q ss_pred -ceEEEEecCC-CeEEEeeCCCcEE-EEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccc
Q 042883 474 -AVSYVKFLSN-NELASASTDSSLR-LWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAS 550 (597)
Q Consensus 474 -~v~~v~~~~~-~~l~s~~~d~~v~-iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 550 (597)
.+..++|+ + ..|++++.++.+. +||+.+++.. .+.+|...+..++|+|||++|++++.++.|++||+.+++....
T Consensus 338 ~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 338 IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 89999999 8 6788888888888 8998876544 4447778899999999999999999999999999998877655
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc----------ccEEEEEec
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK----------GAIKVLVLA 596 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d----------g~v~iwd~~ 596 (597)
.. .|...+.+++|+|||++|++++.+ +.|++||++
T Consensus 416 ~~-----------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 416 ER-----------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EE-----------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred cc-----------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 43 246778999999999999887664 489999975
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=5.8e-18 Score=167.41 Aligned_cols=243 Identities=11% Similarity=0.118 Sum_probs=162.0
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecc-cCccCCccCCCCceEecCCCceeEEEEecCCCC--EEEEee--------
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFS-SVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKN--LIASSD-------- 398 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~--~l~s~~-------- 398 (597)
..+..++|+|+|++|++++.+ .|.+|++. ++.. .........+.+.+++|+| +++ +++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~------~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI------VHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE------EEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE------EEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceecc
Confidence 467789999999999988877 99999986 4410 0011111112356689999 566 355553
Q ss_pred -----CCCcEEEEeCC-CCeeeeEEe----eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc-CCCcc--e
Q 042883 399 -----YDGIVTIWDVT-TSQSVMEYE----EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR-NISQP--L 465 (597)
Q Consensus 399 -----~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~-~~~~~--~ 465 (597)
.+|.+.+|++. ++.....+. .+...+.+++|+| +++++++++. .++.|++||+. + ++. +
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~------~~~~v~~~~~~~~-g~~~~~ 183 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADL------TANKLWTHRKLAS-GEVELV 183 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEET------TTTEEEEEEECTT-SCEEEE
T ss_pred ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcC------CCCEEEEEEECCC-CCEEEe
Confidence 68999999997 455544433 2456799999999 7776665542 13469999997 4 332 2
Q ss_pred eeec--cCCCceEEEEecCC-CeEEEee-CCCcEEEEEcC--CCcce---eeee-------CCCC------ceeEEE-Ee
Q 042883 466 HVFN--GHKKAVSYVKFLSN-NELASAS-TDSSLRLWDVK--ENLPL---HTFR-------GHTN------EKNFVG-LT 522 (597)
Q Consensus 466 ~~~~--~~~~~v~~v~~~~~-~~l~s~~-~d~~v~iwd~~--~~~~~---~~~~-------~~~~------~v~~v~-~s 522 (597)
..+. .|...+..++|+|+ .++++++ .++.|.+|++. +++.. ..+. +|.. .+..++ |+
T Consensus 184 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC
Confidence 2333 24567899999999 4666666 47899999875 45432 1222 1121 478899 99
Q ss_pred ecCCEEEEEeCC-C-----cEEEEEcc-CCccccccc-cCCCCCCCcCcCCCcceEEEEEcc---CCCeEEEecC-cccE
Q 042883 523 VNNEYIACGSET-N-----EVFVYHKA-ISKPAASHR-FGSDADHVDDDMGSYFISAVCWKS---DSPTMLTANR-KGAI 590 (597)
Q Consensus 523 ~~g~~l~~~~~d-~-----~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~h~~~i~~v~~~~---~~~~l~s~~~-dg~v 590 (597)
|||++|++++.+ + .|.+|++. +++...... .. .+...+..++|+| +|++|++++. ++.|
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~---------~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v 334 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP---------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWL 334 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE---------CSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee---------cCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence 999988776543 2 89999996 555432111 10 0133466789999 8999998876 4899
Q ss_pred EEEEecC
Q 042883 591 KVLVLAA 597 (597)
Q Consensus 591 ~iwd~~~ 597 (597)
.||++++
T Consensus 335 ~v~~~~~ 341 (365)
T 1jof_A 335 EIYRWKD 341 (365)
T ss_dssp EEEEEET
T ss_pred EEEEEch
Confidence 9999863
No 154
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=3e-17 Score=159.61 Aligned_cols=244 Identities=9% Similarity=0.043 Sum_probs=178.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCC------------------------CcEEEEecccCccCCccCCCCceEe--cCCCce
Q 042883 328 AANIISSIEFDRDDELFASAGVS------------------------RRIKIFEFSSVVNEPRDVHYPMVEM--PTRSKL 381 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d------------------------~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~i 381 (597)
--+.|.+++++|+|+++++...+ +.|.+||..++ ...... .+...+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p 93 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLP 93 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSE
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCc
Confidence 34679999999999999888777 47999998765 111122 233578
Q ss_pred eEEEEecCCCCEEEEeeCCCcEEEEeCCCCe-eeeEEe---------eccceeEEEEeCCCCCceEEeecCCCcccCCCC
Q 042883 382 SCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-SVMEYE---------EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451 (597)
Q Consensus 382 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~ 451 (597)
.+++++| +++++++...++.|++||..... .+..+. ++-..+.+++++|.++.++++.+. .++
T Consensus 94 ~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~------~~~ 166 (329)
T 3fvz_A 94 HGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY------CNS 166 (329)
T ss_dssp EEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS------SCC
T ss_pred eEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC------CCC
Confidence 8999999 67788888889999999986542 455442 233468999999866777777651 134
Q ss_pred eEEEEEccCCCcceeeeccC----------CCceEEEEecCC-CeE-EEeeCCCcEEEEEcCCCcceeeee--CCCCcee
Q 042883 452 HIHYYDLRNISQPLHVFNGH----------KKAVSYVKFLSN-NEL-ASASTDSSLRLWDVKENLPLHTFR--GHTNEKN 517 (597)
Q Consensus 452 ~i~i~d~~~~~~~~~~~~~~----------~~~v~~v~~~~~-~~l-~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~ 517 (597)
.|++||.. +..+..+... ...+..++++|+ +.| ++...++.|++||..+++.+..+. .+...+.
T Consensus 167 ~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 167 RIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp EEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred eEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence 59999954 5556555422 234889999998 664 555678899999998888888874 4556788
Q ss_pred EEEEee------cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEE
Q 042883 518 FVGLTV------NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIK 591 (597)
Q Consensus 518 ~v~~s~------~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~ 591 (597)
.++|+| +|..+++...++.|++||..+++.+..+... ..+...+.+|+++|+|.++++...++.|+
T Consensus 245 ~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 245 AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--------RKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--------SSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--------CCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 899998 3443333344568999999999887765321 12366789999999998888889999999
Q ss_pred EEEec
Q 042883 592 VLVLA 596 (597)
Q Consensus 592 iwd~~ 596 (597)
+|+++
T Consensus 317 ~~~~~ 321 (329)
T 3fvz_A 317 KFTLT 321 (329)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 99975
No 155
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=6.4e-20 Score=136.12 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=66.2
Q ss_pred CcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHh
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSAR 103 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~ 103 (597)
...+.+++.||||+++|+|||+++|||+||+.||++||.....||+||+.+...+|.+|..+.++++.+...
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999999888899999999999999999999999987643
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.79 E-value=4.4e-18 Score=191.68 Aligned_cols=236 Identities=15% Similarity=0.097 Sum_probs=179.9
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCC-----CceEecCCCceeEEEEe-cCCCCEEEEeeCCCcEE
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHY-----PMVEMPTRSKLSCLSWN-KYTKNLIASSDYDGIVT 404 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~~~~~~i~~v~~~-~~~~~~l~s~~~dg~i~ 404 (597)
.+...+|+|+|++|+.+. ++.|.+|++... ....... ......+...+.+++|+ | ++..|++++ ++.|.
T Consensus 246 ~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~--~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE--KIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAF 320 (1045)
T ss_dssp SSCEEEEEESSSCEEEEE-TTEEEEECTTTC--CEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEE
T ss_pred CcceeeEcCCCCEEEEEe-CCEEEEecCCce--EeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEE
Confidence 466779999999998884 899999998432 1000000 00111234478999999 9 677788777 78999
Q ss_pred EEeCCCCeeeeEEeeccc-eeEEEEeCCCCCceEEeecCCCcccCCCCeEE-EEEccCCCcceeeeccCCCceEEEEecC
Q 042883 405 IWDVTTSQSVMEYEEHEK-RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH-YYDLRNISQPLHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 482 (597)
+|++.++... .+..|.. .+..++|+ ++..++.++.+ +.+. +||+.. +. ...+.+|...+..++|+|
T Consensus 321 ~~~~~~~~~~-~~~~~~~~~~~~~~~s--dg~~l~~~s~~-------~~l~~~~d~~~-~~-~~~l~~~~~~~~~~~~Sp 388 (1045)
T 1k32_A 321 IQDVSGTYVL-KVPEPLRIRYVRRGGD--TKVAFIHGTRE-------GDFLGIYDYRT-GK-AEKFEENLGNVFAMGVDR 388 (1045)
T ss_dssp EECTTSSBEE-ECSCCSCEEEEEECSS--SEEEEEEEETT-------EEEEEEEETTT-CC-EEECCCCCCSEEEEEECT
T ss_pred EEcCCCCceE-EccCCCcceEEeeeEc--CCCeEEEEECC-------CceEEEEECCC-CC-ceEecCCccceeeeEECC
Confidence 9999877644 3556666 89999999 66777776643 3478 889875 33 344447878899999999
Q ss_pred C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC----------cEEEEEccCCcccccc
Q 042883 483 N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN----------EVFVYHKAISKPAASH 551 (597)
Q Consensus 483 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~----------~i~iwd~~~~~~~~~~ 551 (597)
+ ..|++++.++.|++||+.+++......+|...+..++|+|||++|++++.++ .|++||+.+++. ..+
T Consensus 389 DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-~~l 467 (1045)
T 1k32_A 389 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAA 467 (1045)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EEC
T ss_pred CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-EEe
Confidence 9 7789999999999999999988877778888999999999999998887644 899999988763 222
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
. .|...+..++|+|+|++|+.++.++...+|+.
T Consensus 468 ~-----------~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 468 T-----------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp S-----------CSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred e-----------CCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 2 13667888999999999999998888777763
No 157
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.79 E-value=1.8e-19 Score=137.63 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=66.7
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHh
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSAR 103 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~ 103 (597)
....+.+++.||||+++|+|||+++|||+||+.||++||.....||+||+.+...+|.+|..+.++++.+...
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999888899999999999999999999999987643
No 158
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.79 E-value=1.7e-19 Score=137.28 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=66.7
Q ss_pred CcCCCCCccccccccccccccccccc-ccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHhh
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACG-HSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQ 104 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~Cg-H~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~ 104 (597)
...+.+++.||||+++|+|||+++|| |+||+.||++||.....||+||+.+...+|.+|..+.++++.+....
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 34667899999999999999999999 99999999999998788999999999999999999999999876443
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=2.2e-16 Score=150.37 Aligned_cols=247 Identities=13% Similarity=0.139 Sum_probs=173.2
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-CCcE
Q 042883 325 LFHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-DGIV 403 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-dg~i 403 (597)
..++...+.++++++++.++++...++.|.+|+...... ...........+...+.++++.+.++.++++... ++.|
T Consensus 25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 345667899999999999888888899999999764310 0000000001233568899995425666666543 7899
Q ss_pred EEEeCCCCeeeeEEee-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec--cCCCceEEEEe
Q 042883 404 TIWDVTTSQSVMEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--GHKKAVSYVKF 480 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~ 480 (597)
.+|| .++..+..+.. +...+.+++++| ++.++++... ++.|.+||.. +..+..+. .+...+..+++
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-------~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK-------VMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT-------TTEEEEECTT--SCEEEEEECTTTCSSEEEEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECC-------CCEEEEEcCC--CCEEEEeCCCCccCCcEEEEE
Confidence 9999 56666666532 345689999999 6777777654 3459999965 44555553 34457899999
Q ss_pred cCCCe-EEEeeCCCcEEEEEcCCCcceeeeeCC--CCceeEEEEeecCCEEEEEeCCC-cEEEEEccCCccccccccCCC
Q 042883 481 LSNNE-LASASTDSSLRLWDVKENLPLHTFRGH--TNEKNFVGLTVNNEYIACGSETN-EVFVYHKAISKPAASHRFGSD 556 (597)
Q Consensus 481 ~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~ 556 (597)
++++. +++.+.++.|++||.. ++.+..+..+ ...+..++++++|+++++...++ .|.+||. .++.+..+....
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~- 248 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV- 248 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-
T ss_pred CCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-
Confidence 99955 4555668999999974 5666666543 35678999999999888887776 9999995 455554443221
Q ss_pred CCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 557 ADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 557 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+...+.+++|+|+|.++++ +.|+.|++|++.
T Consensus 249 --------~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 249 --------KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp --------CCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred --------CCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 1335789999999987777 568999999974
No 160
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.77 E-value=1.7e-19 Score=133.09 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=64.1
Q ss_pred cCCCCCcccccccccccccccccccccccHHHHHHhhcC-CCCCCCCCCCCccccccchHHHHHHHHHHHH
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN-KSDCPCCGCHLTCKHIFPNLLLNKLLKKTSA 102 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~-~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~ 102 (597)
..+.+++.||||+++|.+|++++|||+||+.||.+|+.. ...||+||+.+...++.+|..+.++++.+..
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999986 5669999999998999999999999998764
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=185.05 Aligned_cols=227 Identities=10% Similarity=0.085 Sum_probs=157.3
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCC----ceeEEEEecCCCCEEEEeeC---------C
Q 042883 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRS----KLSCLSWNKYTKNLIASSDY---------D 400 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~----~i~~v~~~~~~~~~l~s~~~---------d 400 (597)
+++|+|+|.+++++ .|+.|++||+.++ .......+.. .+.+++|+| +++.|++++. +
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETG--------QSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSC--------CEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCC--------cEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecc
Confidence 67899999655554 6999999999887 2222222222 388999999 7888888765 6
Q ss_pred CcEEEEeCCCCeee--eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCce--
Q 042883 401 GIVTIWDVTTSQSV--MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAV-- 475 (597)
Q Consensus 401 g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v-- 475 (597)
+.|++||+.+++.+ ..+ ...+..++|+| +++.|+.+. ++.|++||+.+ +...... .++...|
T Consensus 90 ~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~--------~~~i~~~~~~~-g~~~~l~~~~~~~~v~~ 156 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY--------QNNIYLKQRPG-DPPFQITFNGRENKIFN 156 (719)
T ss_dssp EEEEEEETTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE--------TTEEEEESSTT-SCCEECCCCCBTTTEEE
T ss_pred eEEEEEECCCCccccceec---CcccccceECC-CCCEEEEEE--------CCeEEEEeCCC-CCcEEEecCCCcCCeEc
Confidence 89999999988762 222 24688999999 888888775 45699999986 3333222 2222222
Q ss_pred ---------------EEEEecCC-CeEEEeeCCC----------------------------------cEEEEEcCCCcc
Q 042883 476 ---------------SYVKFLSN-NELASASTDS----------------------------------SLRLWDVKENLP 505 (597)
Q Consensus 476 ---------------~~v~~~~~-~~l~s~~~d~----------------------------------~v~iwd~~~~~~ 505 (597)
.+++|+|| ..|++++.|. .|++||+.+++.
T Consensus 157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 48999999 6788777552 788999988765
Q ss_pred e--------eeeeCCCCceeEEEEeecCCEEEEEeCC----CcEEEEE----ccCCccccccc---cCCCCCCCcCcCCC
Q 042883 506 L--------HTFRGHTNEKNFVGLTVNNEYIACGSET----NEVFVYH----KAISKPAASHR---FGSDADHVDDDMGS 566 (597)
Q Consensus 506 ~--------~~~~~~~~~v~~v~~s~~g~~l~~~~~d----~~i~iwd----~~~~~~~~~~~---~~~~~~~~~~~~h~ 566 (597)
. ..+.+|...+..++|+|||+++++.... ..|.+|| ..+++...... . .|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~----------~~~ 306 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEE----------SRT 306 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEE----------CSS
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccc----------cCC
Confidence 3 2233577788999999998877764432 2488899 77776655442 1 124
Q ss_pred cceE-----EEEEccCCCeEEE--ecCcccEEEE
Q 042883 567 YFIS-----AVCWKSDSPTMLT--ANRKGAIKVL 593 (597)
Q Consensus 567 ~~i~-----~v~~~~~~~~l~s--~~~dg~v~iw 593 (597)
..+. .++|+|+|+.|+. ...+|..+||
T Consensus 307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred ceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 4455 7899999996543 5566654444
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.76 E-value=1.4e-17 Score=175.76 Aligned_cols=234 Identities=8% Similarity=0.013 Sum_probs=167.7
Q ss_pred cCCC-CcEEEEEEcCCCCEEEEeeC---CCcEEEEeccc--CccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC
Q 042883 326 FHAA-NIISSIEFDRDDELFASAGV---SRRIKIFEFSS--VVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 326 ~~~~-~~v~~i~~~~~~~~l~t~~~---d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
..|. ..|..++|+|| +++++++. +....||.+.. .. ... .......+...+|+|++...+++.+.
T Consensus 60 t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g-------~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~ 130 (582)
T 3o4h_A 60 NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG-------EEQ-RLEAVKPMRILSGVDTGEAVVFTGAT 130 (582)
T ss_dssp CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT-------CCE-ECTTSCSBEEEEEEECSSCEEEEEEC
T ss_pred ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC-------ccc-cccCCCCceeeeeCCCCCeEEEEecC
Confidence 3444 68999999999 77777664 45667776654 21 011 11222234466888855455555555
Q ss_pred CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 400 DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 400 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
++.+.+||+.+++.......+ . .+++|+| ++..+++++.++. ..+.|++||+.+ +. ...+..|...+..++
T Consensus 131 ~~~~~l~d~~~g~~~~l~~~~-~--~~~~~sp-DG~~la~~~~~~~---~~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~ 201 (582)
T 3o4h_A 131 EDRVALYALDGGGLRELARLP-G--FGFVSDI-RGDLIAGLGFFGG---GRVSLFTSNLSS-GG-LRVFDSGEGSFSSAS 201 (582)
T ss_dssp SSCEEEEEEETTEEEEEEEES-S--CEEEEEE-ETTEEEEEEEEET---TEEEEEEEETTT-CC-CEEECCSSCEEEEEE
T ss_pred CCCceEEEccCCcEEEeecCC-C--ceEEECC-CCCEEEEEEEcCC---CCeEEEEEcCCC-CC-ceEeecCCCccccce
Confidence 566669999888765554433 3 8899999 8888887765421 125699999986 43 446677888999999
Q ss_pred ecCC-CeEEEeeCCC--cEEEEEcCCCcceeeeeCCCCceeEEE--------EeecCCEEEEEeCCCcEEEEEccCCccc
Q 042883 480 FLSN-NELASASTDS--SLRLWDVKENLPLHTFRGHTNEKNFVG--------LTVNNEYIACGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 480 ~~~~-~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~v~--------~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 548 (597)
|+|| ..|+++..++ .|++||+.+++.. .+.+|...+..++ |+|||.++++++.|+.+++|++ ++..
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 9999 6677777888 8999999988877 7777777777777 9999988899999999999998 5543
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCccc---EEEEEe
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGA---IKVLVL 595 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~---v~iwd~ 595 (597)
.. +...|.+++|+ ++.++++++.+.. |.+||+
T Consensus 279 ~~--------------~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 279 EA--------------PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp CC--------------CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred cc--------------CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 31 14568899999 9999888776643 555553
No 163
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-19 Score=134.27 Aligned_cols=74 Identities=31% Similarity=0.659 Sum_probs=64.9
Q ss_pred cCcCCCCCccccccccccccccccc-ccccccHHHHHHhhcCC--CCCCCCCCCC-ccccccchHHHHHHHHHHHHhh
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNK--SDCPCCGCHL-TCKHIFPNLLLNKLLKKTSARQ 104 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~--~~CP~Cr~~~-~~~~l~~n~~~~~~~~~~~~~~ 104 (597)
..+.+.++++|+||+++|.+|++++ |||+||+.||.+|+... ..||.||+.+ ...++.+|..+.++++.+....
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 3457888999999999999999999 99999999999999744 4699999997 5678999999999999886543
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=8.4e-17 Score=174.44 Aligned_cols=238 Identities=11% Similarity=0.025 Sum_probs=157.2
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCC-----CceeEEEEecCCCCEEEEeeCC-----
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTR-----SKLSCLSWNKYTKNLIASSDYD----- 400 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~~l~s~~~d----- 400 (597)
...++.|+|||.+++++ ||.|++||+.++.. ......+. .....++|+| +++.|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-------SVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-------EEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce-------EEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEE
Confidence 35578999999988886 89999999988721 11111221 1234588999 78888888765
Q ss_pred ----CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee-eeccCCCce
Q 042883 401 ----GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH-VFNGHKKAV 475 (597)
Q Consensus 401 ----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v 475 (597)
+.+.+||+.+++... +..+...+...+|+| +++.|+.+. ++.|++||+.+ +.... +..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SP-dG~~la~~~--------~~~i~~~~~~~-~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSP-VGHKLAYVW--------NNDIYVKIEPN-LPSYRITWTGKEDII 156 (740)
T ss_dssp SCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECS-STTCEEEEE--------TTEEEEESSTT-SCCEECCSCCBTTTE
T ss_pred EccceEEEEEECCCCcEEE-cccCCCcceeeEECC-CCCEEEEEE--------CCeEEEEECCC-CceEEEcCCCCccce
Confidence 567799999887653 556777899999999 788887765 45699999986 33322 222332222
Q ss_pred -----------------EEEEecCC-CeEEEeeCCC------------------------------------cEEEEEcC
Q 042883 476 -----------------SYVKFLSN-NELASASTDS------------------------------------SLRLWDVK 501 (597)
Q Consensus 476 -----------------~~v~~~~~-~~l~s~~~d~------------------------------------~v~iwd~~ 501 (597)
.++.|+|| ..|+.++.|. .|++||+.
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~ 236 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD 236 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence 34899999 5577664322 47889988
Q ss_pred C---Cc--ceeeee------CCCCceeEEEEeecCCEEEEEeC----CCcEEEEEccCCc----cccccccCCCCCCCcC
Q 042883 502 E---NL--PLHTFR------GHTNEKNFVGLTVNNEYIACGSE----TNEVFVYHKAISK----PAASHRFGSDADHVDD 562 (597)
Q Consensus 502 ~---~~--~~~~~~------~~~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~ 562 (597)
+ +. ....+. ++...+..++|+|||+.++.... +..|.+||+.+++ ........ .
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-------~ 309 (740)
T 4a5s_A 237 SLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-------E 309 (740)
T ss_dssp SCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-------E
T ss_pred CCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-------e
Confidence 7 63 223333 26677889999999996665432 3479999999887 22111110 0
Q ss_pred cCCCcceE-----EEEEccCCCeEE-Eec-Ccc--cEEEEEec
Q 042883 563 DMGSYFIS-----AVCWKSDSPTML-TAN-RKG--AIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~-----~v~~~~~~~~l~-s~~-~dg--~v~iwd~~ 596 (597)
..|...|. .++|+|||+.|+ ..+ .+| .|++||++
T Consensus 310 ~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 310 MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence 01233333 688999999876 544 444 46666643
No 165
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=3e-16 Score=154.07 Aligned_cols=232 Identities=6% Similarity=0.031 Sum_probs=148.2
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC--CCcEEEEeCCCCe--eeeEEeeccceeE
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY--DGIVTIWDVTTSQ--SVMEYEEHEKRAW 425 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~--dg~i~iwd~~~~~--~~~~~~~~~~~v~ 425 (597)
++.|.+|.++...... .......+...+..++|+| ++++++++.. ++.|.+|++.++. .+..+..+...+.
T Consensus 15 ~~~i~v~~~d~~tg~~----~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~ 89 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTL----TNDGLLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA 89 (347)
T ss_dssp CCEEEEEEEETTTTEE----EEEEEEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS
T ss_pred CCCEEEEEEcCCCCeE----EEeeeeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE
Confidence 5668888876531111 1112233456778899999 5664444432 6899999997765 3444455777899
Q ss_pred EEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc--ceeeecc---------CCCceEEEEecCC-CeEEEeeCCC
Q 042883 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ--PLHVFNG---------HKKAVSYVKFLSN-NELASASTDS 493 (597)
Q Consensus 426 ~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~--~~~~~~~---------~~~~v~~v~~~~~-~~l~s~~~d~ 493 (597)
.++|+| ++.++++++. .++.|.+||+...+. .+..+.. +...+.+++|+|+ ..+++...++
T Consensus 90 ~~a~sp-dg~~l~~~~~------~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 90 YVAVDE-ARQLVYSANY------HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EEEEET-TTTEEEEEET------TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred EEEECC-CCCEEEEEeC------CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 999999 7776666552 245599999964232 2222221 1234888999999 5444555688
Q ss_pred cEEEEEcC-CCccee--eeeC-CCCceeEEEEeecCCEEEE-EeCCCcEEEEEccC--CccccccccCCCCCCCcCcCCC
Q 042883 494 SLRLWDVK-ENLPLH--TFRG-HTNEKNFVGLTVNNEYIAC-GSETNEVFVYHKAI--SKPAASHRFGSDADHVDDDMGS 566 (597)
Q Consensus 494 ~v~iwd~~-~~~~~~--~~~~-~~~~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~h~ 566 (597)
.|.+||+. +++... .+.. ....+..++|+|||+++++ +..++.|.+|++.. ++............. ....
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~ 239 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD---YTAH 239 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT---CCSC
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC---CCCC
Confidence 89999998 454322 2222 2335778999999996665 55688999999874 433221111110000 0113
Q ss_pred cceEEEEEccCCCeE-EEecCcccEEEEEec
Q 042883 567 YFISAVCWKSDSPTM-LTANRKGAIKVLVLA 596 (597)
Q Consensus 567 ~~i~~v~~~~~~~~l-~s~~~dg~v~iwd~~ 596 (597)
..+..++|+|+|++| +++..++.|.+|+++
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 568999999999987 455678999999985
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=7.4e-17 Score=174.79 Aligned_cols=241 Identities=9% Similarity=0.068 Sum_probs=162.1
Q ss_pred cEEEEEEcCCCCEEEEeeC---------CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 331 IISSIEFDRDDELFASAGV---------SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~---------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
.|.+++|||||++|++++. ++.|++||+.++.... ... ....+..++|+| +++.|+.+. ++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-----~~~---l~~~~~~~~~SP-DG~~la~~~-~~ 130 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR-----GNE---LPRPIQYLCWSP-VGSKLAYVY-QN 130 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-----SSC---CCSSBCCEEECS-STTCEEEEE-TT
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc-----cee---cCcccccceECC-CCCEEEEEE-CC
Confidence 3889999999999998876 6899999998762100 000 124588899999 688888875 78
Q ss_pred cEEEEeCCCCeeeeEE-eecccee-----------------EEEEeCCCCCceEEeecCCCc-c----------------
Q 042883 402 IVTIWDVTTSQSVMEY-EEHEKRA-----------------WSVDFSCTEPSMLVSGSDDCK-V---------------- 446 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~s~~~d~~-~---------------- 446 (597)
.|++||+.++...... .++...| .+++|+| ++..|++++.|.. +
T Consensus 131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 209 (719)
T 1z68_A 131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRT 209 (719)
T ss_dssp EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEE
T ss_pred eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccc
Confidence 9999999887654332 2222212 4899999 8888887765421 1
Q ss_pred --------c--CCCCeEEEEEccCCCcce--------eeeccCCCceEEEEecCCCeEEEe-eCC----CcEEEEE----
Q 042883 447 --------G--SADHHIHYYDLRNISQPL--------HVFNGHKKAVSYVKFLSNNELASA-STD----SSLRLWD---- 499 (597)
Q Consensus 447 --------~--~~d~~i~i~d~~~~~~~~--------~~~~~~~~~v~~v~~~~~~~l~s~-~~d----~~v~iwd---- 499 (597)
| .....|++||+.+ +... ..+.+|...+..++|+|++.++.. ... ..|.+||
T Consensus 210 ~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 210 INIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred eeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence 0 1123789999986 3321 223467888999999999655443 222 2488899
Q ss_pred cCCCcceeee----eCCCCcee-----EEEEeecCCEEEE--EeCCC--cEEEEEccCCccccccccCCCCCCCcCcCCC
Q 042883 500 VKENLPLHTF----RGHTNEKN-----FVGLTVNNEYIAC--GSETN--EVFVYHKAISKPAASHRFGSDADHVDDDMGS 566 (597)
Q Consensus 500 ~~~~~~~~~~----~~~~~~v~-----~v~~s~~g~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 566 (597)
+.+++....+ .+|...+. .+.|+|||+.|+. +..+| .|.+||+.+++.. .+.. +.
T Consensus 289 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~-----------~~ 356 (719)
T 1z68_A 289 WQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITS-----------GK 356 (719)
T ss_dssp SSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSC-----------SS
T ss_pred CCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-eccc-----------Cc
Confidence 8777666555 46666666 7899999985543 44555 5677777666532 2221 24
Q ss_pred cceEEEEEccCCCeEEEecC-----cccEEEEEec
Q 042883 567 YFISAVCWKSDSPTMLTANR-----KGAIKVLVLA 596 (597)
Q Consensus 567 ~~i~~v~~~~~~~~l~s~~~-----dg~v~iwd~~ 596 (597)
..+..+.+. +++.|+..+. ++.+++|.++
T Consensus 357 ~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 357 WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 457777777 7777666554 4889999875
No 167
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.72 E-value=4.7e-16 Score=151.73 Aligned_cols=200 Identities=10% Similarity=0.046 Sum_probs=145.5
Q ss_pred cEEEEEEcCCCCEE-EEeeCCCcEEEEecccCccCCccCCCCceEecC------CCceeEEEEecCCCCEEEEee-----
Q 042883 331 IISSIEFDRDDELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPT------RSKLSCLSWNKYTKNLIASSD----- 398 (597)
Q Consensus 331 ~v~~i~~~~~~~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~------~~~i~~v~~~~~~~~~l~s~~----- 398 (597)
.+..++|+|+|+.+ +++..++.|.+||+.++ ........ ...+.+++|+| +++.+++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~ 105 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--------ETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRL 105 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTC--------CEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCC--------CeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccc
Confidence 47789999999766 45556789999999876 11111111 12577899999 677777775
Q ss_pred -------CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee----
Q 042883 399 -------YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---- 467 (597)
Q Consensus 399 -------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~---- 467 (597)
.++.|.+||+.+++.+..+.. ...+..++|+| ++.++++++ +. |++||+.+ ++.+..
T Consensus 106 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~--~~-------i~~~d~~~-~~~~~~~~~~ 173 (337)
T 1pby_B 106 ELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLG--RD-------LHVMDPEA-GTLVEDKPIQ 173 (337)
T ss_dssp CSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEES--SS-------EEEEETTT-TEEEEEECST
T ss_pred ccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEeC--Ce-------EEEEECCC-CcEeeeeecc
Confidence 579999999998888777754 45688899999 666665552 22 55666543 222111
Q ss_pred --------------------------------------------------------------eccCCCceEEEEecCC-C
Q 042883 468 --------------------------------------------------------------FNGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 468 --------------------------------------------------------------~~~~~~~v~~v~~~~~-~ 484 (597)
+..+...+.+++|+|+ .
T Consensus 174 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC
Confidence 1223345667999999 5
Q ss_pred eEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 485 ELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 485 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
+++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||+.+++.+..+..+
T Consensus 254 ~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 254 RAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 66666 789999999998888777643 45789999999999999989999999999999887776643
No 168
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.72 E-value=4.9e-19 Score=141.48 Aligned_cols=98 Identities=16% Similarity=0.308 Sum_probs=68.1
Q ss_pred ccCcCCCCCcccccccccccccccc-cccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHhhhhcc
Q 042883 30 DRDTEVDRDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQVANA 108 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~~~~~ 108 (597)
...+.++++++|+||+++|.+|+++ +|||+||+.||.+|+. ..||+||..+...++.+|..+.++++.+........
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~~~~ 91 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRNLLH 91 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHHHHHHh
Confidence 3445678899999999999999999 9999999999999997 679999999988899999999999998865543221
Q ss_pred CCchhhHhhhhhhcccccccchhh
Q 042883 109 ASPIEHLRLALQQGCEVSVKELDG 132 (597)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ 132 (597)
... ...|..|......+|.+.
T Consensus 92 ~~~---~~~c~~h~~~~~lfc~~~ 112 (117)
T 1jm7_B 92 DNE---LSDLKEDKPRKSLFNDAG 112 (117)
T ss_dssp CCC---CCC---------------
T ss_pred hcc---ccccccccccCccceecc
Confidence 111 133444554455555443
No 169
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-19 Score=132.23 Aligned_cols=66 Identities=35% Similarity=0.817 Sum_probs=58.1
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhcC-------CCCCCCCCCCCccccccchHHHHHH
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN-------KSDCPCCGCHLTCKHIFPNLLLNKL 96 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~-------~~~CP~Cr~~~~~~~l~~n~~~~~~ 96 (597)
..+.++++++|+||++.|.+|++++|||+||+.||.+|+.. ...||.||+.+...++++|..+.++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 45678889999999999999999999999999999999986 4569999999999889888766443
No 170
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=3.4e-15 Score=147.35 Aligned_cols=236 Identities=10% Similarity=0.111 Sum_probs=150.1
Q ss_pred CCCEEEEeeC----CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC----CcEEEEeCCC-
Q 042883 340 DDELFASAGV----SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD----GIVTIWDVTT- 410 (597)
Q Consensus 340 ~~~~l~t~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~- 410 (597)
...++++|++ ++.|.+|.++...... ...... +...+..++|+| ++++|++++.+ +.|.+|++..
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~----~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~ 85 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGES----LPLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKE 85 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCE----EEEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCE----EEeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCC
Confidence 3445666643 5689999886431111 111222 566778899999 68888888775 7999998765
Q ss_pred -Cee--eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee--e-e--cc--------CCCc
Q 042883 411 -SQS--VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH--V-F--NG--------HKKA 474 (597)
Q Consensus 411 -~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~--~-~--~~--------~~~~ 474 (597)
+.. +.....+...+..+++ ++.++++++. .++.|.+|++...+.... . + .+ +...
T Consensus 86 ~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (361)
T 3scy_A 86 KGTLHLLNTQKTMGADPCYLTT---NGKNIVTANY------SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH 156 (361)
T ss_dssp TTEEEEEEEEECSSSCEEEEEE---CSSEEEEEET------TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred CCcEEEeeEeccCCCCcEEEEE---CCCEEEEEEC------CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence 433 3333334556777787 3444444432 245699999975332211 1 1 11 1234
Q ss_pred eEEEEecCC-CeEEEee-CCCcEEEEEcCCCcc------e-------eeeeCCCCceeEEEEeecCCEEEEEe-CCCcEE
Q 042883 475 VSYVKFLSN-NELASAS-TDSSLRLWDVKENLP------L-------HTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVF 538 (597)
Q Consensus 475 v~~v~~~~~-~~l~s~~-~d~~v~iwd~~~~~~------~-------~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~ 538 (597)
+.+++|+|+ .++++++ .++.|.+|++..... + .........+..++|+|+|+++++++ .++.|.
T Consensus 157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 578999999 4455544 588999999875431 1 11223445678999999999887776 689999
Q ss_pred EEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC--cccEEEEEec
Q 042883 539 VYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR--KGAIKVLVLA 596 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~--dg~v~iwd~~ 596 (597)
+|++.+++.......... ..+...+..++|+|+|++|++++. ++.|.||+++
T Consensus 237 v~~~~~g~~~~~~~~~~~------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 237 AFRYADGMLDEIQTVAAD------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEETTEEEEEEEEESC------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEEecCCceEEeEEEecC------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 999987654322211110 112445789999999999866554 5899999985
No 171
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.2e-18 Score=133.44 Aligned_cols=75 Identities=27% Similarity=0.533 Sum_probs=67.3
Q ss_pred cCcCCCCCcccccccccccccccc-cccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHhhh
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQV 105 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~~ 105 (597)
..+.+++++.|+||++.|.+|+++ +|||+||+.||.+|+.....||.||..+...++.+|..+.++++.+.....
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 345667789999999999999988 899999999999999988889999999999999999999999998875543
No 172
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-18 Score=129.66 Aligned_cols=70 Identities=19% Similarity=0.469 Sum_probs=62.2
Q ss_pred CCCCCccccccccccccccccc-ccccccHHHHHHhhcCC------CCCCC--CCCC-CccccccchHHHHHHHHHHHHh
Q 042883 34 EVDRDTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNK------SDCPC--CGCH-LTCKHIFPNLLLNKLLKKTSAR 103 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~------~~CP~--Cr~~-~~~~~l~~n~~~~~~~~~~~~~ 103 (597)
...+++.||||+++|.|||+++ |||+||+.||++||... ..||+ |++. +...+|.+|..|.++++.+...
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 4567899999999999999996 99999999999999753 46999 9888 8888999999999999987643
No 173
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.71 E-value=6.3e-19 Score=136.14 Aligned_cols=75 Identities=20% Similarity=0.473 Sum_probs=66.8
Q ss_pred ccCcCCCCCccccccccccccccc-ccccccccHHHHHHhhcCC-CCCCCCCCCCccccccchHHHHHHHHHHHHhh
Q 042883 30 DRDTEVDRDTLCPICKQLMTDAFM-TACGHSFCYTCIFTHLRNK-SDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQ 104 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P~~-l~CgH~FC~~Cl~~~~~~~-~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~ 104 (597)
.....++++++|+||+++|.+|++ ++|||+||+.||.+|+... ..||.||..+...++.+|..+..+++.+....
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 345678889999999999999999 9999999999999999877 57999999999999999999999888765443
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=3.3e-16 Score=156.27 Aligned_cols=243 Identities=8% Similarity=-0.015 Sum_probs=156.1
Q ss_pred EEEcCCCCEEEEeeC-CCc--EEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC
Q 042883 335 IEFDRDDELFASAGV-SRR--IKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS 411 (597)
Q Consensus 335 i~~~~~~~~l~t~~~-d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 411 (597)
.+|+|||++|+.++. +|. |.+||+.++. .......+...+..+.|+| ++..|+.++.++.|++||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------ATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------EEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------eEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCC
Confidence 789999999998887 664 7777877651 1111122333445678999 7888999988899999999998
Q ss_pred eeeeEEeeccceeEEEE--eCCCCCceEEeecCCCc---------------ccCCCCeEEEEEccCCCcceeeeccCCCc
Q 042883 412 QSVMEYEEHEKRAWSVD--FSCTEPSMLVSGSDDCK---------------VGSADHHIHYYDLRNISQPLHVFNGHKKA 474 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d~~---------------~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 474 (597)
+....+..+...+.... ++| ++.+++....++. ....+..|++||+.+ +. ...+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-g~-~~~l~~~~~~ 189 (388)
T 3pe7_A 113 EENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT-GE-STVILQENQW 189 (388)
T ss_dssp CEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT-CC-EEEEEEESSC
T ss_pred cceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC-Cc-eEEeecCCcc
Confidence 87766665655554444 477 6666653211100 012346799999987 43 4444456677
Q ss_pred eEEEEecC-C-CeEEEeeCC------CcEEEEEcCCCcceeeeeCCC--CceeEEEEeecCCEEEEEeC-CC----cEEE
Q 042883 475 VSYVKFLS-N-NELASASTD------SSLRLWDVKENLPLHTFRGHT--NEKNFVGLTVNNEYIACGSE-TN----EVFV 539 (597)
Q Consensus 475 v~~v~~~~-~-~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~--~~v~~v~~s~~g~~l~~~~~-d~----~i~i 539 (597)
+..+.|+| + ..|+..+.+ ..|.+||..++.. ..+..+. ..+..++|+|||+.|+..+. ++ .|++
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 89999999 8 556655543 3788888765543 4444333 24778899999997755433 22 3999
Q ss_pred EEccCCccccccccCCCCCCCcCcCCC-cceEEEEEccCCCeEEEe---------cCcccEEEEEec
Q 042883 540 YHKAISKPAASHRFGSDADHVDDDMGS-YFISAVCWKSDSPTMLTA---------NRKGAIKVLVLA 596 (597)
Q Consensus 540 wd~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~---------~~dg~v~iwd~~ 596 (597)
||+.+++......... ..|. ..+..++|+|+|++|+.. ..+..|++||++
T Consensus 269 ~d~~~g~~~~l~~~~~-------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 269 ADPETLENRQLTSMPA-------CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp ECTTTCCEEEEEEECC-------EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred EecCCCceEEEEcCCC-------ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 9999887543332211 0000 012224799999988753 456789999975
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=4.4e-15 Score=139.94 Aligned_cols=236 Identities=9% Similarity=0.038 Sum_probs=161.5
Q ss_pred cEEEEEEcCCCCEEE-EeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 331 IISSIEFDRDDELFA-SAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~-t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
...+++++++|.+++ +...++.|.+|+..+... ..........+.++++++ +++++++.. ++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-------TVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-------ceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCC
Confidence 688999999998777 546788999998765411 011112335678899998 567666655 8899999987
Q ss_pred CCeeeeEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEE
Q 042883 410 TSQSVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELA 487 (597)
Q Consensus 410 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~ 487 (597)
+.... .+. .....+.++++++ ++.++++... ++.|.+||..+ .............+..++++++ ..++
T Consensus 96 ~~~~~-~~~~~~~~~p~~i~~~~-~g~l~v~~~~-------~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v 165 (270)
T 1rwi_B 96 SNNQT-VLPFDGLNYPEGLAVDT-QGAVYVADRG-------NNRVVKLAAGS-KTQTVLPFTGLNDPDGVAVDNSGNVYV 165 (270)
T ss_dssp CSCCE-ECCCCSCSSEEEEEECT-TCCEEEEEGG-------GTEEEEECTTC-CSCEECCCCSCCSCCCEEECTTCCEEE
T ss_pred CceEe-eeecCCcCCCcceEECC-CCCEEEEECC-------CCEEEEEECCC-ceeEeeccccCCCceeEEEeCCCCEEE
Confidence 65432 232 2235689999998 6777776553 34489997654 2222222223346788999998 4455
Q ss_pred EeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCc
Q 042883 488 SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSY 567 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~ 567 (597)
+...++.|.+||..+.........+...+.+++++++|.++++...++.|.+|+........ ... .+..
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~----------~~~~ 234 (270)
T 1rwi_B 166 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF----------TGLN 234 (270)
T ss_dssp EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC----------CSCS
T ss_pred EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc----------CCCC
Confidence 55567899999988765443333333667899999999877777778899999986544322 111 1135
Q ss_pred ceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 568 FISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 568 ~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+.+++++++|.++++...++.|++|++.
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 68999999999988999999999999874
No 176
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.69 E-value=6e-18 Score=137.01 Aligned_cols=70 Identities=24% Similarity=0.518 Sum_probs=62.4
Q ss_pred CcCCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCcc-ccccchHHHHHHHHHHH
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTC-KHIFPNLLLNKLLKKTS 101 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~-~~l~~n~~~~~~~~~~~ 101 (597)
...++++++|+||+++|.+|++++|||+||+.||.+|+.... .||.||+.+.. ..+.+|..+.++++.+.
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 345677899999999999999999999999999999998554 69999999987 78999999999998764
No 177
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.4e-18 Score=129.85 Aligned_cols=68 Identities=28% Similarity=0.704 Sum_probs=58.8
Q ss_pred cccCcCCCCCcccccccccccccccccccccccHHHHHHhhcC------CCCCCCCCCCCccccccchHHHHHH
Q 042883 29 VDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN------KSDCPCCGCHLTCKHIFPNLLLNKL 96 (597)
Q Consensus 29 ~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~------~~~CP~Cr~~~~~~~l~~n~~~~~~ 96 (597)
+...+.+++++.|+||++.|.+|++++|||+||+.||..|+.. ...||.||+.+...++.+|..+.++
T Consensus 10 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 10 SSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 3455678889999999999999999999999999999999986 5569999999998888888665443
No 178
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=1e-14 Score=143.95 Aligned_cols=243 Identities=12% Similarity=0.098 Sum_probs=151.6
Q ss_pred EEEEeeCC--CcEEEEecccCccCCccCCCCceEe--cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC-CCeeeeEE
Q 042883 343 LFASAGVS--RRIKIFEFSSVVNEPRDVHYPMVEM--PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT-TSQSVMEY 417 (597)
Q Consensus 343 ~l~t~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~ 417 (597)
++++|++. +.|.+|+++...... ...... .....+..++|+| ++++|++++.+ .|.+|++. +++.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l----~~~~~~~~~~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTC----KLIKRTEIPQDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEE----EEEEEEECCTTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCE----EEeeEEccCCCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEee
Confidence 35556553 468877764321110 001111 2334678899999 78888888877 99999987 77665433
Q ss_pred eec-cceeEEEEeCCCCCc--eEEeecCCCcc--cC----CCCeEEEEEccCCCcceeeec----cCCCceEEEEecCC-
Q 042883 418 EEH-EKRAWSVDFSCTEPS--MLVSGSDDCKV--GS----ADHHIHYYDLRNISQPLHVFN----GHKKAVSYVKFLSN- 483 (597)
Q Consensus 418 ~~~-~~~v~~~~~~~~~~~--~l~s~~~d~~~--~~----~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~v~~~~~- 483 (597)
... .+.+..++|+| +++ ++++++.+... +. .++.+.+|++...+.....+. .+...+.+++|+|+
T Consensus 78 ~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 78 SHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp EEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred EeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence 211 13366789999 676 34454310000 00 256699999974344433332 24567899999999
Q ss_pred CeEEEee-CCCcEEEEEcC-CCcce--eeee--CCCCceeEEEEeecCCEEEEEeC-CCcEEEEEcc--CCcccc---cc
Q 042883 484 NELASAS-TDSSLRLWDVK-ENLPL--HTFR--GHTNEKNFVGLTVNNEYIACGSE-TNEVFVYHKA--ISKPAA---SH 551 (597)
Q Consensus 484 ~~l~s~~-~d~~v~iwd~~-~~~~~--~~~~--~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~--~~~~~~---~~ 551 (597)
.++++++ .++.|++||+. +++.. ..+. .+...+..++|+|+|+++++++. ++.|.+|++. +++... .+
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 4566655 46799999998 66543 2333 23566889999999999887764 6899999875 454321 11
Q ss_pred ccCCCCCCCcCcCCCc------ceEEEE-EccCCCeEEEecCcc------cEEEEEec
Q 042883 552 RFGSDADHVDDDMGSY------FISAVC-WKSDSPTMLTANRKG------AIKVLVLA 596 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~------~i~~v~-~~~~~~~l~s~~~dg------~v~iwd~~ 596 (597)
.... ... .+|.. .+..++ |+|+|++|++++.++ .|.+|+++
T Consensus 237 ~~~~--~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 237 PLIP--PGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp ESSC--TTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred EcCC--CCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 1100 000 01122 588999 999999988765432 89999985
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=5.6e-15 Score=159.39 Aligned_cols=245 Identities=13% Similarity=0.102 Sum_probs=164.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCC-----cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 328 AANIISSIEFDRDDELFASAGVSR-----RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
|...+..++|||||++||.+..++ .|++||+.++. ..........+..++|+| +++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--------~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~ 193 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--------ELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQ 193 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--------EEEEEEEEECSCCEEECT-TSSEEEEEECCCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------CCcccccCcccceEEEEe-CCCEEEEEEECCc
Confidence 445788999999999998776543 89999998871 111111122367899999 6777877777665
Q ss_pred ----------------EEEEeCCCCeee--eEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC--
Q 042883 403 ----------------VTIWDVTTSQSV--MEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN-- 460 (597)
Q Consensus 403 ----------------i~iwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~-- 460 (597)
|++|++.++... ..+. .+...+.++.|+| ++.+|+.++..+. ..+..|++||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~--~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC--DPVNRLWYCDLQQES 270 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS--SSCCEEEEEEGGGSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC--CCccEEEEEECcccc
Confidence 999999877532 2222 2455678999999 6666665543221 0156799999975
Q ss_pred ----CCcceeeeccCCCceEEEEecCC-CeEEEeeCC----CcEEEEEcCCCcc--eeeeeCCCC--ceeEEEEeecCCE
Q 042883 461 ----ISQPLHVFNGHKKAVSYVKFLSN-NELASASTD----SSLRLWDVKENLP--LHTFRGHTN--EKNFVGLTVNNEY 527 (597)
Q Consensus 461 ----~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d----~~v~iwd~~~~~~--~~~~~~~~~--~v~~v~~s~~g~~ 527 (597)
+......+..+...+... |+|+ +.|+..+.+ +.|.+||+.++.. ...+..+.. .+..++|++++.+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 349 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL 349 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred cccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence 322455566666655553 6776 666555443 3599999987642 345555544 6778999877778
Q ss_pred EEEEeCCCc--EEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe----cCcccEEEEEec
Q 042883 528 IACGSETNE--VFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA----NRKGAIKVLVLA 596 (597)
Q Consensus 528 l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~----~~dg~v~iwd~~ 596 (597)
+++...|+. |.+|++.+++.+..+.. +...+..++++|++..++.. ...+.|++||+.
T Consensus 350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~-----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 350 VLCYLHDVKNTLQLHDLATGALLKIFPL-----------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECC-----------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred EEEEEECCEEEEEEEECCCCCEEEecCC-----------CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 888888874 56677766765555443 25678899999998766532 345789999875
No 180
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-18 Score=128.05 Aligned_cols=68 Identities=31% Similarity=0.720 Sum_probs=58.8
Q ss_pred cccCcCCCCCcccccccccccccccccccccccHHHHHHhhcC------CCCCCCCCCCCccccccchHHHHHH
Q 042883 29 VDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN------KSDCPCCGCHLTCKHIFPNLLLNKL 96 (597)
Q Consensus 29 ~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~------~~~CP~Cr~~~~~~~l~~n~~~~~~ 96 (597)
+.....+++++.|+||++.|.+|++++|||+||+.||..|+.. ...||.||+.+...++.+|..+.++
T Consensus 10 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 10 SGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 3445678889999999999999999999999999999999876 5679999999999888888665443
No 181
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.67 E-value=3.1e-17 Score=137.80 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=64.9
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCccccccchHHHHHHHHHHHH
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFPNLLLNKLLKKTSA 102 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~ 102 (597)
....+.+++.||||+++|.|||++||||+||+.||++||.... .||+||..+...+|.||..+.++++.+..
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999998643 59999999999999999999999997753
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=3e-15 Score=160.52 Aligned_cols=259 Identities=7% Similarity=-0.005 Sum_probs=165.9
Q ss_pred ccCCCCcEEEEEEcCCCCEEEEe--eCCCcEEEEecccCccCCccCCCCceEecCCCcee---------EEEEe--cCCC
Q 042883 325 LFHAANIISSIEFDRDDELFASA--GVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLS---------CLSWN--KYTK 391 (597)
Q Consensus 325 ~~~~~~~v~~i~~~~~~~~l~t~--~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~---------~v~~~--~~~~ 391 (597)
+.+|...|..++|++++-+++.. +.++...||....+. .......+...+. ...|+ | ++
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg 90 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-------AEESALPAPWNVRNRVFEYSGFPWAGVPRP-AG 90 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-------CEEESSCTTCCBCCCGGGTCCCCEEEECCS-SS
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-------CcceeCCCCccccccccccCCccceeeeec-CC
Confidence 34678899999999887666666 557889999863321 1111222333333 55666 8 45
Q ss_pred CE-EEEee-CCCcEEEEeCC--CCeeeeEEee-----ccceeEEEEeCCCCCceEEeecCCCc---ccCCCCeEEEEEcc
Q 042883 392 NL-IASSD-YDGIVTIWDVT--TSQSVMEYEE-----HEKRAWSVDFSCTEPSMLVSGSDDCK---VGSADHHIHYYDLR 459 (597)
Q Consensus 392 ~~-l~s~~-~dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~---~~~~d~~i~i~d~~ 459 (597)
+. |+.++ .+..|.+|++. +......+.. |...+.+++|+| +++.|+.++.+.. .......|++||+.
T Consensus 91 ~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 91 GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 55 55443 45677777775 2033444444 567889999999 7777777664410 00012469999987
Q ss_pred CCC----cceeeec-cCCCceEEEEecCC-CeEEEeeCC--------CcEEEEEcC-CC---cceeeeeCCCCceeEEEE
Q 042883 460 NIS----QPLHVFN-GHKKAVSYVKFLSN-NELASASTD--------SSLRLWDVK-EN---LPLHTFRGHTNEKNFVGL 521 (597)
Q Consensus 460 ~~~----~~~~~~~-~~~~~v~~v~~~~~-~~l~s~~~d--------~~v~iwd~~-~~---~~~~~~~~~~~~v~~v~~ 521 (597)
+.. .....+. .+...+..++|+|| ..|+.++.+ ..|.+||+. ++ +......++...+..++|
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 521 3344555 55677888999999 567766654 379999998 46 444444455678899999
Q ss_pred eecCCEEEEEeCCC--cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 522 TVNNEYIACGSETN--EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 522 s~~g~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+|||+++++++.++ .|++||+.+++............ ...-...+..++|+|++.++++++. +.++||.++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA---GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS---CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc---CccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 99999888888888 66666765665443322110000 0000111567899999999999998 999999654
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=2.6e-14 Score=136.65 Aligned_cols=232 Identities=12% Similarity=0.009 Sum_probs=161.5
Q ss_pred CCCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+.....+++|+|+|+ +++++..++.|.+|+..++ ......+...+.+++++| ++.++++...++.|.+|
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEE
Confidence 455678999999998 7788888999999998764 111223456789999999 67777777667899999
Q ss_pred eCCCCeeeeEEeec----cceeEEEEeCCCCCceEEeecCCCcc----------cCCCCeEEEEEccCCCcceeeeccCC
Q 042883 407 DVTTSQSVMEYEEH----EKRAWSVDFSCTEPSMLVSGSDDCKV----------GSADHHIHYYDLRNISQPLHVFNGHK 472 (597)
Q Consensus 407 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~~----------~~~d~~i~i~d~~~~~~~~~~~~~~~ 472 (597)
|..+++........ ...+.+++++| ++.++++.+..+.. ....+.|..||.. + .+..+..+.
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCC
Confidence 99777654433221 23467899999 77888863211110 0012345555544 2 344444566
Q ss_pred CceEEEEecCC-CeEEEeeCCCcEEEEEcC-CCcc---eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 473 KAVSYVKFLSN-NELASASTDSSLRLWDVK-ENLP---LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 473 ~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~-~~~~---~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
.....++|+|+ ..+++.+.++.|.+||+. ++.. ...+..+...+..++++++|+++++. ++.|.+||.. ++.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 67899999999 556667778899999987 4543 23333345566789999999876666 7889999986 666
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEE-ccCCCeEEEecCcc
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCW-KSDSPTMLTANRKG 588 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~-~~~~~~l~s~~~dg 588 (597)
+..+..+ .. +++++| +|+++.|++++.++
T Consensus 249 ~~~~~~~-----------~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 249 LGRVLTP-----------QT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp EEEEECS-----------SC-CCEEEEESTTSCEEEEEETTE
T ss_pred EEEEECC-----------CC-ceeEEEECCCCCEEEEEcCCe
Confidence 5555432 34 889999 58999888888775
No 184
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.9e-17 Score=117.88 Aligned_cols=61 Identities=30% Similarity=0.643 Sum_probs=54.3
Q ss_pred ccCcCCCCCcccccccccccccccc-cccccccHHHHHHhhcCCCCCCCCCCCCccccccch
Q 042883 30 DRDTEVDRDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n 90 (597)
...+.+++++.|+||++.|.+|+++ +|||+||+.||.+|+.....||+||+.+...++.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 3456778899999999999999998 999999999999999888889999999988777654
No 185
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=119.22 Aligned_cols=61 Identities=34% Similarity=0.720 Sum_probs=51.3
Q ss_pred ccCcCCCCCccccccccccccccccc-ccccccHHHHHHhhcCC--CCCCCCCCCCcccc-ccch
Q 042883 30 DRDTEVDRDTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNK--SDCPCCGCHLTCKH-IFPN 90 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~--~~CP~Cr~~~~~~~-l~~n 90 (597)
...+.+.++++|+||++.|.+|++++ |||+||+.||.+|+... ..||+||+.+...+ +.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 34567788999999999999999999 99999999999999855 57999999865443 4444
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.1e-13 Score=134.67 Aligned_cols=243 Identities=10% Similarity=0.088 Sum_probs=160.9
Q ss_pred cCCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC----C
Q 042883 326 FHAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD----G 401 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d----g 401 (597)
..+...+.+++|+++|.+++++..++.|.+||..++ ........+...+.+++|+| +++++++...+ +
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-------EIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTG 112 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-------CEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCC
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-------cEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCc
Confidence 345667899999999998888888999999998765 11111123456799999998 67777776655 6
Q ss_pred cEEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 402 IVTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
.|.+||..++.....+. .....+.+++++| ++.++++...+.. ....+.|..||... + .+..+..+...+..++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~-~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~i~ 188 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYS-TNPLGGVYYVSPDF-R-TVTPIIQNISVANGIA 188 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBT-TBCCEEEEEECTTS-C-CEEEEEEEESSEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccc-cCCCceEEEEeCCC-C-EEEEeecCCCcccceE
Confidence 89999988766543332 2345789999999 7777776653211 01124466666553 2 2333333334578999
Q ss_pred ecCC-CeE-EEeeCCCcEEEEEcCC-Ccceee--------eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccc
Q 042883 480 FLSN-NEL-ASASTDSSLRLWDVKE-NLPLHT--------FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 480 ~~~~-~~l-~s~~~d~~v~iwd~~~-~~~~~~--------~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 548 (597)
|+|+ ..+ ++.+.++.|.+||+.+ +..+.. +.++ ..+..++++++|+++++...++.|.+||. .++.+
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI 266 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEE
Confidence 9999 445 4455678999999964 333321 1122 35778999999998888777899999998 45555
Q ss_pred cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc
Q 042883 549 ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 549 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
..+..+. ...+|...+.+++|+|++..|+.++.+
T Consensus 267 ~~~~~~~-----~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQILIPG-----RDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTT-----GGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEcCC-----CccccccCcceEEECCCCCEEEEEeCc
Confidence 4443221 001122368999999998777655544
No 187
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=4.6e-15 Score=145.46 Aligned_cols=198 Identities=8% Similarity=0.060 Sum_probs=141.9
Q ss_pred cEEEEEEcCCCCEEE-EeeCCCcEEEEecccCccCCccCCCCceEe--cC-----CCceeEEEEecCCCCEEEEeeCC--
Q 042883 331 IISSIEFDRDDELFA-SAGVSRRIKIFEFSSVVNEPRDVHYPMVEM--PT-----RSKLSCLSWNKYTKNLIASSDYD-- 400 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~-t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~~-----~~~i~~v~~~~~~~~~l~s~~~d-- 400 (597)
.+..++|+|+|++++ ++..++.|.+||+.++. ..... .+ ...+.+++|+| +++++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 114 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--------NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQ 114 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--------EEEEEEcccccccccccccceEECC-CCCEEEEEccccc
Confidence 467899999998665 55568999999998761 11111 11 22378899999 68888887755
Q ss_pred ----------CcEEEEeCCCCee---eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee
Q 042883 401 ----------GIVTIWDVTTSQS---VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 401 ----------g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~ 467 (597)
+.|.+||+.+++. +..+. +...+.+++|+| ++.+++ ++ +.|.+||+.+ ++.+..
T Consensus 115 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~l~~-~~---------~~i~~~d~~~-~~~~~~ 181 (349)
T 1jmx_B 115 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGSLYV-AG---------PDIYKMDVKT-GKYTVA 181 (349)
T ss_dssp ECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSCEEE-ES---------SSEEEECTTT-CCEEEE
T ss_pred ccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCcEEE-cc---------CcEEEEeCCC-Cceecc
Confidence 8999999987543 33333 344688999999 666544 33 1289999876 444444
Q ss_pred eccCC--------------------------------------------------------------------CceEEEE
Q 042883 468 FNGHK--------------------------------------------------------------------KAVSYVK 479 (597)
Q Consensus 468 ~~~~~--------------------------------------------------------------------~~v~~v~ 479 (597)
+..+. ..+..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (349)
T 1jmx_B 182 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 261 (349)
T ss_dssp ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeE
Confidence 33211 1345677
Q ss_pred ecC-C-CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccccc
Q 042883 480 FLS-N-NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRF 553 (597)
Q Consensus 480 ~~~-~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 553 (597)
|+| + +.++++ ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.++.|.+||+.+++.+..+..
T Consensus 262 ~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 262 RSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred ecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 789 8 566666 88999999999988877764 34567999999999888888899999999998887776654
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=1.9e-15 Score=151.13 Aligned_cols=238 Identities=9% Similarity=-0.022 Sum_probs=152.1
Q ss_pred CcEEEEEEcCCCCEEEEeeCC---CcEEEEecccCccCCccCCCCceEecCCCc-eeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 330 NIISSIEFDRDDELFASAGVS---RRIKIFEFSSVVNEPRDVHYPMVEMPTRSK-LSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
..+..++|+|||++|+..... ..|.+|++.++. ......+... ...+.|+| +++.|+.++.++.|++
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--------~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~ 106 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--------AVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMK 106 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--------EEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--------EEEeecCCCCccccceECC-CCCEEEEEEcCCcEEE
Confidence 346678899999998776543 367888887651 1111122222 33478999 7888988888889999
Q ss_pred EeCCCCeeeeEEeeccceeEE-------------------EEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee
Q 042883 406 WDVTTSQSVMEYEEHEKRAWS-------------------VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH 466 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~ 466 (597)
||+.+++.......+...... +.|+| ++..++..... .+..+..|++||+.+ +....
T Consensus 107 ~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~--~~~~~~~l~~~d~~~-g~~~~ 182 (396)
T 3c5m_A 107 VDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFY--HTNPTCRLIKVDIET-GELEV 182 (396)
T ss_dssp EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHH--HTCCCEEEEEEETTT-CCEEE
T ss_pred EECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeec--cCCCcceEEEEECCC-CcEEe
Confidence 999888765555434332222 34566 44444332100 001345699999986 44333
Q ss_pred eeccCCCceEEEEecC-C-CeEEEeeCC------CcEEEEEcCCCcceeeeeCC--CCceeEEEEeecCCEEEEEeCC--
Q 042883 467 VFNGHKKAVSYVKFLS-N-NELASASTD------SSLRLWDVKENLPLHTFRGH--TNEKNFVGLTVNNEYIACGSET-- 534 (597)
Q Consensus 467 ~~~~~~~~v~~v~~~~-~-~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~~~~d-- 534 (597)
+..+...+..+.|+| + +.|+..+.+ ..|.+||+.+++.. .+..+ ...+..++|+|+|++|+.++.+
T Consensus 183 -~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 183 -IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp -EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred -eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 334667789999999 5 556655433 46888998765433 33222 2257788999999987766543
Q ss_pred ---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEcc-CCCeEEEec----------------CcccEEEEE
Q 042883 535 ---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKS-DSPTMLTAN----------------RKGAIKVLV 594 (597)
Q Consensus 535 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~~----------------~dg~v~iwd 594 (597)
+.|++||+.+++....... . ... +.|+| +|++|++++ .++.|++||
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~------------~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVM------------P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEEC------------C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CccceEEEEECCCCCeEEeeeC------------C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 4499999988765443322 1 123 88999 999888754 346799998
Q ss_pred ec
Q 042883 595 LA 596 (597)
Q Consensus 595 ~~ 596 (597)
+.
T Consensus 327 ~~ 328 (396)
T 3c5m_A 327 TK 328 (396)
T ss_dssp TT
T ss_pred cc
Confidence 74
No 189
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.65 E-value=3.5e-17 Score=135.92 Aligned_cols=68 Identities=25% Similarity=0.624 Sum_probs=61.6
Q ss_pred CCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCccc-cccchHHHHHHHHHHH
Q 042883 34 EVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCK-HIFPNLLLNKLLKKTS 101 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~~-~l~~n~~~~~~~~~~~ 101 (597)
.++++++|+||++.|.+|++++|||+||+.||.+|+.... .||+||..+... .+.+|..+.++++.+.
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 3557799999999999999999999999999999998664 699999999987 8999999999999765
No 190
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.65 E-value=4.6e-17 Score=128.16 Aligned_cols=70 Identities=30% Similarity=0.586 Sum_probs=62.8
Q ss_pred CcCCCCCcccccccccccccccc-cccccccHHHHHHhhcCCCCCCCCCCCCccc----cccchHHHHHHHHHHH
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKSDCPCCGCHLTCK----HIFPNLLLNKLLKKTS 101 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~----~l~~n~~~~~~~~~~~ 101 (597)
.+.+++++.|+||++.|.+|+++ +|||+||+.||.+|+.....||.||..+... .+.+|..+.++++.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 34677899999999999999998 9999999999999999888899999999865 6889999999988764
No 191
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=4.7e-15 Score=147.87 Aligned_cols=256 Identities=7% Similarity=0.008 Sum_probs=154.1
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEE--EecCCCCEEEEe--------
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLS--WNKYTKNLIASS-------- 397 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~--~~~~~~~~l~s~-------- 397 (597)
+...+..+.|+|||+.|+.++.++.|++||+.++ ........+...+.... ++| ++..++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g-------~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL-------EENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWV 150 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC-------CEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCC
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC-------cceeeeechhhcccccceeECC-CCCeeccccccCcccc
Confidence 4444556789999999999999999999999876 11112222333343333 367 66666632
Q ss_pred --------------eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCc
Q 042883 398 --------------DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQ 463 (597)
Q Consensus 398 --------------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~ 463 (597)
..++.|.+||+.+++.. .+..+...+..++|+|.++..++....+.. ......|.++|+.. +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~-~~~~~~l~~~d~~~-~- 226 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPH-DLVDARMWLINEDG-T- 226 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCT-TTSSCSEEEEETTS-C-
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCC-CCCcceEEEEeCCC-C-
Confidence 24468999999888654 344566778999999944555554443211 00134588888764 3
Q ss_pred ceeeeccCC--CceEEEEecCC-CeEEEeeC-CC----cEEEEEcCCCccee--eeeCCCC---ceeEEEEeecCCEEEE
Q 042883 464 PLHVFNGHK--KAVSYVKFLSN-NELASAST-DS----SLRLWDVKENLPLH--TFRGHTN---EKNFVGLTVNNEYIAC 530 (597)
Q Consensus 464 ~~~~~~~~~--~~v~~v~~~~~-~~l~s~~~-d~----~v~iwd~~~~~~~~--~~~~~~~---~v~~v~~s~~g~~l~~ 530 (597)
....+..+. ..+....|+|+ ..|+..+. ++ .|++||+.+++... .+.++.. ....+.|+|||+.|+.
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 334444343 35788999999 44544332 22 39999999886432 3322110 0122479999998775
Q ss_pred E---------eCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe-cCcccEEEEEec
Q 042883 531 G---------SETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA-NRKGAIKVLVLA 596 (597)
Q Consensus 531 ~---------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~-~~dg~v~iwd~~ 596 (597)
. ..+..|++||+.+++.............. .......+..++|+|||++|+.+ ..+|...||.++
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVF-EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ----------CCCCEEEEEETTTTEEEEEEECCCCCCCB-TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeeeccccccCCCCEEEEEeccCCceEEeccccCccccc-ccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4 45678999999887654322211000000 00001147788999999987764 467888888764
No 192
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=2.1e-14 Score=141.15 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=156.5
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecccCccCCccCCCCceEe--c-----CCCceeEEEEecCCCCEEEE
Q 042883 334 SIEFDRDDELFASAG----------VSRRIKIFEFSSVVNEPRDVHYPMVEM--P-----TRSKLSCLSWNKYTKNLIAS 396 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~--~-----~~~~i~~v~~~~~~~~~l~s 396 (597)
.++|+|||++++++. .++.|.+||..+. ...... . +......++++| ++++|++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--------~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v 124 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--------TFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVL 124 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--------CEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--------cEEEEEEcCccccccCCCcceEEECC-CCCEEEE
Confidence 899999999999886 3678999998765 111111 1 224567899999 7888887
Q ss_pred eeC--CCcEEEEeCCCCeeeeE-EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee------e
Q 042883 397 SDY--DGIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH------V 467 (597)
Q Consensus 397 ~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~------~ 467 (597)
+.. ++.|.+||+.+++.+.. +.. . ....+.+.|.+...+++.+.|+. +.+|++...++... .
T Consensus 125 ~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~-------~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 125 QNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGG-------LLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSS-------EEEEEECTTSSEEEEEECCCC
T ss_pred ECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCc-------EEEEEECCCCcEeeeccccce
Confidence 764 57999999999988777 532 2 22345677755566777665544 88888865343331 1
Q ss_pred eccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcce--eeeeCC----------CCceeEEEEeecCCEEEEEeC-
Q 042883 468 FNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPL--HTFRGH----------TNEKNFVGLTVNNEYIACGSE- 533 (597)
Q Consensus 468 ~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~----------~~~v~~v~~s~~g~~l~~~~~- 533 (597)
+.....++ .+.++++ ..++..+.++.|.+||+...... ..+... ......++|+|++..++++..
T Consensus 196 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 196 FSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp SCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred EcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 22222221 2233455 45666778899999998754321 221100 011223789999887776543
Q ss_pred ----------CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 534 ----------TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 534 ----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
++.|.+||+.+++.+..+..+ . +.+++|+|+|++|++++. +.|.|||+.+
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-----------~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-----------D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECT-----------T--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecC-----------C--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 348999999999988887752 3 899999999999998887 9999999764
No 193
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=115.57 Aligned_cols=57 Identities=26% Similarity=0.691 Sum_probs=50.3
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhc---CCCCCCCCCCCCccccc
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR---NKSDCPCCGCHLTCKHI 87 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~---~~~~CP~Cr~~~~~~~l 87 (597)
..+.+++++.|+||++.|.+|++++|||+||+.||.+|+. ....||+||+.+...++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4567888999999999999999999999999999999997 34569999999987664
No 194
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=118.40 Aligned_cols=62 Identities=27% Similarity=0.546 Sum_probs=53.8
Q ss_pred CcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHH
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLN 94 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~ 94 (597)
.+..++++.|+||++.|.+|++++|||+||+.||.+|+.....||+||+.+. ..+.+|..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l~ 70 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKELM 70 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHHH
Confidence 3456678999999999999999999999999999999988888999999997 6677775443
No 195
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=112.38 Aligned_cols=57 Identities=23% Similarity=0.583 Sum_probs=49.8
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhc-CCCCCCCCCCCCccccc
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR-NKSDCPCCGCHLTCKHI 87 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~-~~~~CP~Cr~~~~~~~l 87 (597)
....+++++.|+||++.|.+|++++|||+||+.||.+|+. ....||.||+.+...++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3456788999999999999999999999999999999995 45679999999876654
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=9.3e-15 Score=157.19 Aligned_cols=244 Identities=9% Similarity=-0.021 Sum_probs=160.4
Q ss_pred CCCCcEEEEEEcCCCCEEEE-----eeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 327 HAANIISSIEFDRDDELFAS-----AGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t-----~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
+|...+.+++|||||++||. |+.+..|++||+.++.... ..... ......++|+| ++..|+.++.|.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~-~~~~~~~~wsp-Dg~~l~~~~~d~ 189 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIE-GGKYATPKWTP-DSKGFYYEWLPT 189 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBS-CCTTCCCEECT-TSSEEEEEECCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccC-cccccceEEec-CCCEEEEEEecC
Confidence 45667999999999999983 4445689999998872110 00011 11126799999 678888887776
Q ss_pred c-------------EEEEeCCCCe----eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 402 I-------------VTIWDVTTSQ----SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 402 ~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
. |++|++.++. .+.....+...+.++.|+| ++.+++.++.++. ....|++||... + .
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~---~~~~l~~~~~~~-~-~ 263 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGW---SENDVYWKRPGE-K-D 263 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETT---TEEEEEEECTTC-S-S
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCC---CceEEEEEcCCC-C-c
Confidence 5 9999998775 2333334556788999999 6676666553331 123577776543 3 3
Q ss_pred eeeeccCCCceEEEEecCCCeEEEeeC----CCcEEEEEcCCCcc--eeeeeCC--CCceeEEEEeecCCEEEEEeCCCc
Q 042883 465 LHVFNGHKKAVSYVKFLSNNELASAST----DSSLRLWDVKENLP--LHTFRGH--TNEKNFVGLTVNNEYIACGSETNE 536 (597)
Q Consensus 465 ~~~~~~~~~~v~~v~~~~~~~l~s~~~----d~~v~iwd~~~~~~--~~~~~~~--~~~v~~v~~s~~g~~l~~~~~d~~ 536 (597)
...+..+...+....|++++ ++..+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++...|+.
T Consensus 264 ~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 44455555566666664446 555443 57899999987653 2334333 4457788887 7778888888998
Q ss_pred EEEEEcc-CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE----EecCcccEEEEEec
Q 042883 537 VFVYHKA-ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML----TANRKGAIKVLVLA 596 (597)
Q Consensus 537 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~----s~~~dg~v~iwd~~ 596 (597)
.+||.+. .++....+.++ +...+..++++|++..|+ +....+.|++||+.
T Consensus 342 ~~l~~~~~~g~~~~~l~~~----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQLP----------GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEEEEETTCCEEEECCCS----------SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEeCCCCeeEEecCC----------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 8888665 34433333321 155688889999998776 33456889999975
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=2.6e-14 Score=140.09 Aligned_cols=226 Identities=10% Similarity=0.087 Sum_probs=148.2
Q ss_pred CcEEEEEEcCCCCEEEEeeCC---Cc--EEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-----
Q 042883 330 NIISSIEFDRDDELFASAGVS---RR--IKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY----- 399 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d---~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~----- 399 (597)
..+..+.|+|||++|+.++.+ +. |.+|++.++ .......... +..++|+| +++.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--------~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--------SSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRRED 128 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--------EEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC-
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--------ceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCc
Confidence 457889999999999887654 33 777777665 1122222233 89999999 6777776653
Q ss_pred ----------------------CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCccc-CC-CCeEEE
Q 042883 400 ----------------------DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG-SA-DHHIHY 455 (597)
Q Consensus 400 ----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~-~~-d~~i~i 455 (597)
...|++||+.+++.+..+.. . .+..++|+| ++ ++++++.+.... .. ...|++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEE
Confidence 25799999988877455554 3 788999999 66 777665432100 00 223555
Q ss_pred EEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCC--------CcEEEEEcCCCcceeeeeCCCCceeE-EEEeecC
Q 042883 456 YDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTD--------SSLRLWDVKENLPLHTFRGHTNEKNF-VGLTVNN 525 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v~~-v~~s~~g 525 (597)
+| + +.. ..+..+ ..+..+ +|+ ..|+.++.+ ..|.+|| +++......++...+.. +.|+ +|
T Consensus 205 ~d--~-~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg 274 (347)
T 2gop_A 205 WE--D-GKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK 274 (347)
T ss_dssp EE--T-TEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred eC--C-Cce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence 55 3 443 333334 444444 888 556666543 3688888 55544444455667776 8999 88
Q ss_pred CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccE-EEEEe
Q 042883 526 EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAI-KVLVL 595 (597)
Q Consensus 526 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v-~iwd~ 595 (597)
++++++.++.++|| +.+++...... +...|.+++|+| .++++++.++.. .||.+
T Consensus 275 -~~~~~~~~~~~~l~-~~~g~~~~~~~------------~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 275 -VYFTLFEEGSVNLY-IWDGEIKPIAK------------GRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp -EEEEEEETTEEEEE-EESSSEEEEEC------------SSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred -EEEEEecCCcEEEE-EcCCceEEEec------------CCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 88899999999999 87554432221 256799999999 677777766665 78865
No 198
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.63 E-value=6.7e-17 Score=133.21 Aligned_cols=63 Identities=29% Similarity=0.709 Sum_probs=52.4
Q ss_pred CCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHH
Q 042883 34 EVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLK 98 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~ 98 (597)
.++++++|+||++.|.+|+++||||+||..||.+|+.....||+||+.+.... .|+.++++++
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~i~ 111 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT--YSLVLDNCIN 111 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE--ECHHHHHHHH
T ss_pred hccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC--CccchhHHHH
Confidence 45678999999999999999999999999999999998888999999986432 3444544444
No 199
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=2.5e-14 Score=153.44 Aligned_cols=238 Identities=9% Similarity=-0.001 Sum_probs=151.7
Q ss_pred EEEEc--CCCCE-EEEeeC-CCcEEEEecc--c-CccCCccCCCCceEec-----CCCceeEEEEecCCCCEEEEeeCC-
Q 042883 334 SIEFD--RDDEL-FASAGV-SRRIKIFEFS--S-VVNEPRDVHYPMVEMP-----TRSKLSCLSWNKYTKNLIASSDYD- 400 (597)
Q Consensus 334 ~i~~~--~~~~~-l~t~~~-d~~v~iw~~~--~-~~~~~~~~~~~~~~~~-----~~~~i~~v~~~~~~~~~l~s~~~d- 400 (597)
...|+ |||+. |+.++. +..|.+|++. + + ....... +...+..++|+| +++.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~ 151 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA--------VPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEF 151 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC--------CCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC--------CCEeccCCccCCCCccccCcEECC-CCCEEEEEEecc
Confidence 55565 99998 776554 5566666665 2 3 1111111 456788999999 78888887766
Q ss_pred ---------CcEEEEeCCC------CeeeeEEe-eccceeEEEEeCCCCCceEEeecCCCcccC-CCCeEEEEEccCCC-
Q 042883 401 ---------GIVTIWDVTT------SQSVMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGS-ADHHIHYYDLRNIS- 462 (597)
Q Consensus 401 ---------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~-~d~~i~i~d~~~~~- 462 (597)
..|++||+.+ +.. ..+. .+...+..++|+| ++..|+.++.++.... ....|++||+...+
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999987 543 4444 5567888999999 7887776654431100 12469999998324
Q ss_pred --cceeeeccCCCceEEEEecCC-CeEEEeeCCC--cEEEEEcCCCcceeeeeCCCCc--------eeEEEEeecCCEEE
Q 042883 463 --QPLHVFNGHKKAVSYVKFLSN-NELASASTDS--SLRLWDVKENLPLHTFRGHTNE--------KNFVGLTVNNEYIA 529 (597)
Q Consensus 463 --~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~--------v~~v~~s~~g~~l~ 529 (597)
.......+|...+..+.|+|+ .++++++.++ .|.+||+.+++.......+... +..++|+|++.+++
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 333444456778999999999 5566677777 5666666566544333332221 45788999999999
Q ss_pred EEeCCCcEEEE--EccCCccccccccCCCCCCCcCcCCCcceEEE-EEccCCCeEEEecCcccEEEEEe
Q 042883 530 CGSETNEVFVY--HKAISKPAASHRFGSDADHVDDDMGSYFISAV-CWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 530 ~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v-~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+++. +.++|| |+.+++ +..+.. |...+..+ +++++.-++++++.+....||.+
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~~-----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAAG-----------PWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECCS-----------SCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEc-CccEEEEEECCCCc-EEEecC-----------CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 9988 999999 544444 333321 24556666 55444334445566655555544
No 200
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.9e-16 Score=136.40 Aligned_cols=74 Identities=18% Similarity=0.355 Sum_probs=64.8
Q ss_pred cCcCCCCCcccccccccccccccc-cccccccHHHHHHhhcCCC--CCCC--CCCCCccccccchHHHHHHHHHHHHhh
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKS--DCPC--CGCHLTCKHIFPNLLLNKLLKKTSARQ 104 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~~~--~CP~--Cr~~~~~~~l~~n~~~~~~~~~~~~~~ 104 (597)
..+....+++||||+++|++||+. .|||+||+.||.+||.... .||+ ||+.+...+|.+|..+.++++.++...
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence 334677889999999999999985 8999999999999998653 4999 999999999999999999998776543
No 201
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.61 E-value=1.3e-16 Score=127.30 Aligned_cols=70 Identities=19% Similarity=0.529 Sum_probs=59.2
Q ss_pred CcCCCCCcccccccccccccccccccccccHHHHHHhhcC-CCCCCCCCCCCcc-------ccccchHHHHHHHHHHH
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN-KSDCPCCGCHLTC-------KHIFPNLLLNKLLKKTS 101 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~-~~~CP~Cr~~~~~-------~~l~~n~~~~~~~~~~~ 101 (597)
...+.++++|+||+++|.+|++++|||+||+.||.+|+.. ...||.||+.+.. +++..|..+..+++++.
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred ccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456678999999999999999999999999999999976 4569999999974 45677888888777654
No 202
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.61 E-value=2e-16 Score=126.57 Aligned_cols=72 Identities=29% Similarity=0.672 Sum_probs=63.7
Q ss_pred cccCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCccccccchHHHHHHHHHH
Q 042883 29 VDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFPNLLLNKLLKKT 100 (597)
Q Consensus 29 ~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~~~l~~n~~~~~~~~~~ 100 (597)
......+++++.|+||++.|.+|++++|||+||+.||.+|+.... .||+||..+...++.++..+.+++..+
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 9 VEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCBSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hhhccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 345678899999999999999999999999999999999998665 799999999988888988888777654
No 203
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5e-16 Score=108.83 Aligned_cols=49 Identities=29% Similarity=0.803 Sum_probs=43.7
Q ss_pred ccCcCCCCCcccccccccccccccccccccccHHHHHHhhc---CCCCCCCC
Q 042883 30 DRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR---NKSDCPCC 78 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~---~~~~CP~C 78 (597)
...+.++++++|+||++.|.+|++++|||+||+.||.+|+. ....||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567888999999999999999999999999999999998 44569998
No 204
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.60 E-value=7.9e-16 Score=111.08 Aligned_cols=59 Identities=19% Similarity=0.455 Sum_probs=48.7
Q ss_pred cccCcCCCCCccccccccccc--cccccc--ccccccHHHHHHhhcC-CCCCCCCCCCCccccc
Q 042883 29 VDRDTEVDRDTLCPICKQLMT--DAFMTA--CGHSFCYTCIFTHLRN-KSDCPCCGCHLTCKHI 87 (597)
Q Consensus 29 ~~~~~~~~~~l~C~IC~~~f~--~P~~l~--CgH~FC~~Cl~~~~~~-~~~CP~Cr~~~~~~~l 87 (597)
+.....++++++||||++.|. |++.+| |||+||+.|+.++|.. ...||.||+.+....+
T Consensus 2 s~~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 2 SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CSCSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CccccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 344567889999999999994 667776 9999999999999964 3559999999987654
No 205
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.60 E-value=1.6e-16 Score=126.65 Aligned_cols=69 Identities=26% Similarity=0.646 Sum_probs=60.3
Q ss_pred cCCCCCcccccccccccccccccccccccHHHHHHhhcCCC---CCCCCCCCCccccccchHHHHHHHHHHH
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS---DCPCCGCHLTCKHIFPNLLLNKLLKKTS 101 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~---~CP~Cr~~~~~~~l~~n~~~~~~~~~~~ 101 (597)
..+.+++.|+||++.|.+|++++|||+||+.||.+|+.... .||.||..+...++.+|..+.++++.+.
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred HhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 35566899999999999999999999999999999998653 6999999999989988887777777665
No 206
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=2.3e-13 Score=132.05 Aligned_cols=207 Identities=9% Similarity=0.093 Sum_probs=150.6
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCC---CceEecCCCceeEEEEecCCCCEEEEee-CCCcE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHY---PMVEMPTRSKLSCLSWNKYTKNLIASSD-YDGIV 403 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~dg~i 403 (597)
+...+..++++|+|+++++...++.|++|+............. .-....+...+.+|+++|+++.++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 4557899999999998888888999999998654101000000 0000123346889999986677888876 68999
Q ss_pred EEEeCCCCeeeeEEeecc----------ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec--cC
Q 042883 404 TIWDVTTSQSVMEYEEHE----------KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--GH 471 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--~~ 471 (597)
++|| .++..+..+.... ..+.+++++|+++.++++... ++.|++||..+ ++.+..+. .+
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-------~~~I~~~~~~~-G~~~~~~~~~~~ 239 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-------NGRIQCFKTDT-KEFVREIKHASF 239 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-------TTEEEEEETTT-CCEEEEECCTTT
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-------CCEEEEEECCC-CcEEEEEecccc
Confidence 9999 5677766664322 348999999944788887764 44599999985 56666663 45
Q ss_pred CCceEEEEecCCCeEEE--------eeCCCcEEEEEcCCCcceeeee---CCCCceeEEEEeecCCEEEEEeCCCcEEEE
Q 042883 472 KKAVSYVKFLSNNELAS--------ASTDSSLRLWDVKENLPLHTFR---GHTNEKNFVGLTVNNEYIACGSETNEVFVY 540 (597)
Q Consensus 472 ~~~v~~v~~~~~~~l~s--------~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 540 (597)
...+..++++| +.++. ...+..|++||..+++.+..+. ++...+..++++|+|.++++...++.|++|
T Consensus 240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 66788999999 43332 2334589999999999888873 566678999999999888888889999999
Q ss_pred EccC
Q 042883 541 HKAI 544 (597)
Q Consensus 541 d~~~ 544 (597)
++..
T Consensus 319 ~~~~ 322 (329)
T 3fvz_A 319 TLTE 322 (329)
T ss_dssp EEEE
T ss_pred eCCc
Confidence 9754
No 207
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=3.4e-14 Score=141.93 Aligned_cols=247 Identities=7% Similarity=0.018 Sum_probs=149.6
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-------------------EEEecCCCCEE
Q 042883 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-------------------LSWNKYTKNLI 394 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------v~~~~~~~~~l 394 (597)
.+.|+|||+.|+.++.++.|.+|++.++.. ......+...... ++|+| +++.+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~ 156 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEE-------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWE 156 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCc-------EEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcce
Confidence 378999999999999899999999887611 1111111111111 34566 45554
Q ss_pred EEe-----eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 395 ASS-----DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 395 ~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
+.+ ..+..|.+||+.+++..... .+...+..+.|+|.++..++..+.+.. ......|.+||+.. +. ...+.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~-~~~~~~l~~~d~~~-~~-~~~l~ 232 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPH-DLVDARMWLVNEDG-SN-VRKIK 232 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCS-SSCSCCCEEEETTS-CC-CEESS
T ss_pred eeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCC-CCCCceEEEEECCC-Cc-eeEee
Confidence 443 35668999999887765444 566778999999944554444433211 01124689999875 33 23333
Q ss_pred cC--CCceEEEEecCC-CeEEEeeCC-----CcEEEEEcCCCcceeeeeCCCCceeEEEEee-cCCEEEEEe--------
Q 042883 470 GH--KKAVSYVKFLSN-NELASASTD-----SSLRLWDVKENLPLHTFRGHTNEKNFVGLTV-NNEYIACGS-------- 532 (597)
Q Consensus 470 ~~--~~~v~~v~~~~~-~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~-------- 532 (597)
.+ ...+..+.|+|+ ..|+.++.+ +.|++||+.+++....... .. .. +.|+| +|+++++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeec
Confidence 23 235788999999 556665443 4499999988765433221 12 23 89999 999888754
Q ss_pred --------CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec-CcccEEEEEec
Q 042883 533 --------ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 533 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
.++.|++||+.+++................. -...+..++|+|+|++|+.++ .++...||.++
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD-RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB-SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccccCCCCcEEEEecccCceEEccCCCCcccccccc-ccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887653322111000000000 001256688999999887654 46677777654
No 208
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=1.7e-13 Score=134.27 Aligned_cols=226 Identities=10% Similarity=0.033 Sum_probs=146.0
Q ss_pred CcEEEEEEcCCCCEEEEee---------CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC
Q 042883 330 NIISSIEFDRDDELFASAG---------VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD 400 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d 400 (597)
..+...+| ||+.++... .++.|.+|++.++ ..... ..+..++|+| ++..|+..+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~--------~~~~l----~~~~~~~~Sp-Dg~~la~~~~~ 79 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN--------ARRFI----ENATMPRISP-DGKKIAFMRAN 79 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC--------CEEEE----ESCEEEEECT-TSSEEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC--------ceEEc----ccCCCeEECC-CCCEEEEEEec
Confidence 45777888 888877642 2667999998876 11111 4678899999 67777766543
Q ss_pred ---C--cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCC------------------Cc--ccCCCCeEEE
Q 042883 401 ---G--IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDD------------------CK--VGSADHHIHY 455 (597)
Q Consensus 401 ---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------------~~--~~~~d~~i~i 455 (597)
+ .|.+||+.+++....... .. +..++|+| ++..|+.++.+ +. .......|++
T Consensus 80 ~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (347)
T 2gop_A 80 EEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI 156 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred cCCCcceEEEEECCCCceEEEEcC-CC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence 3 488889888776555443 33 99999999 66666655422 10 0011356999
Q ss_pred EEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCC-------cEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEE
Q 042883 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDS-------SLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYI 528 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 528 (597)
||+.+ +..+..+.. . .+..+.|+|++.+++++.++ ...||.+.+++ ...+..+ ..+.. ++|||++|
T Consensus 157 ~d~~~-~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~--~spdg~~l 229 (347)
T 2gop_A 157 FDTES-EEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYA--VDSDGERI 229 (347)
T ss_dssp EETTT-TEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEE--EEECSSCE
T ss_pred EECCC-CeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-eEEeccC-cceee--ECCCCCEE
Confidence 99986 444244443 3 78899999999555554432 34455444444 3444434 44443 49999988
Q ss_pred EEEeCC--------CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEE-EEEccCCCeEEEecCcccEEEEEec
Q 042883 529 ACGSET--------NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISA-VCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 529 ~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+.++.+ ..|.+|| +++...... +|...+.. +.|+ ++ ++++++.++.++|| ++
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-----------~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILD-----------EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCEEESST-----------TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred EEEEccccCCccccceEEEEC--CCceEeccc-----------cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 877644 3688888 444332221 23567886 8999 88 88899999999999 75
No 209
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-16 Score=112.08 Aligned_cols=55 Identities=22% Similarity=0.437 Sum_probs=48.6
Q ss_pred CCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCcccccc
Q 042883 34 EVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIF 88 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~ 88 (597)
...+++.|+||++.|.+|+.++|||.||+.||.+|+.....||+||+.+...++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 3456789999999999999999999999999999998888899999998765543
No 210
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=6.1e-13 Score=128.88 Aligned_cols=236 Identities=8% Similarity=0.005 Sum_probs=163.9
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
.....+.++ ++..+++...++.|.+||..++ ...........+..+++++ ++.++++...++.|.+||..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--------~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF--------KEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC--------CEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETT
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECccc--------EEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECC
Confidence 346777775 3555566666899999999876 2222233456788999988 56555554478999999999
Q ss_pred CCeeeeEEeecc-----ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC
Q 042883 410 TSQSVMEYEEHE-----KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN 484 (597)
Q Consensus 410 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~ 484 (597)
+++....+.... ..+..+++ . ++.++++... .++.|.+||+.+ ++.+..+.. ......+.++|++
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~------~~~~v~viD~~t-~~~~~~i~~-g~~p~~i~~~~dG 183 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWS------YQNRILKIDTET-DKVVDELTI-GIQPTSLVMDKYN 183 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECT------TCCEEEEEETTT-TEEEEEEEC-SSCBCCCEECTTS
T ss_pred CCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCC------CCCEEEEEECCC-CeEEEEEEc-CCCccceEEcCCC
Confidence 988877765322 15667777 2 6666666431 145599999987 566665543 2345788899986
Q ss_pred eEEEeeC-C----------CcEEEEEcCCCcceeeeeCC-CCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 485 ELASAST-D----------SSLRLWDVKENLPLHTFRGH-TNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 485 ~l~s~~~-d----------~~v~iwd~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
.++.++. + +.|.+||..+++....+... ...+..++|+|++++|+++.. .|.+||..+++......
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~ 261 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF 261 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS
T ss_pred CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee
Confidence 6555443 3 68999999988877776532 236789999999998887755 89999998887642111
Q ss_pred cCCCCCCCcCcCCCcceEEEEEcc-CCCeEEEe----cCcccEEEEEec
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKS-DSPTMLTA----NRKGAIKVLVLA 596 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~----~~dg~v~iwd~~ 596 (597)
.. .+...+.+++++| ++.++++. ..++.|.+||.+
T Consensus 262 ~~---------~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 262 LE---------FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp BC---------CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred ec---------CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 11 0135688999999 55666666 678999999863
No 211
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=1.7e-12 Score=124.01 Aligned_cols=237 Identities=7% Similarity=-0.011 Sum_probs=164.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 327 HAANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.+...+.+++++++|.++++...++.|.+|+.. +... ..........+.++++++ ++.++++...++.|..|
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT------EYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRI 83 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE------EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE------EecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEE
Confidence 355689999999999977776668899999977 4100 000011346788999998 67777777668899999
Q ss_pred eCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCC
Q 042883 407 DVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSN 483 (597)
Q Consensus 407 d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~ 483 (597)
|.. +.. ..+. .....+.++++.+ ++.++++... ++.|..||. . +..... ...+...+..++++++
T Consensus 84 ~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-------~~~i~~~d~-~-g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 84 TKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMN-------GNRIGRITD-D-GKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp CTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETT-------TTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTT
T ss_pred CCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecC-------CceEEEECC-C-CCEEEecCCCCCCCCceEEEcCC
Confidence 976 332 2222 2345789999998 7777776653 344899998 3 332222 2234467899999998
Q ss_pred CeEEE-eeCCCcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc
Q 042883 484 NELAS-ASTDSSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD 561 (597)
Q Consensus 484 ~~l~s-~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 561 (597)
+.+.. ...++.|..||. +++.... +......+..++++++|.++++...++.|.+||. +++... +...
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~------- 221 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP------- 221 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-------
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC-------
Confidence 55544 445688999998 6654432 2334456789999999998777767889999998 665332 2211
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.+...+.+++++++|.++++...++.|.+||.
T Consensus 222 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 --TPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 12456899999999997777767788988885
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=6.5e-13 Score=128.06 Aligned_cols=248 Identities=9% Similarity=0.052 Sum_probs=161.0
Q ss_pred CCcEEEEEEcCCCCEEEE-------eeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC
Q 042883 329 ANIISSIEFDRDDELFAS-------AGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG 401 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t-------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg 401 (597)
-....+++|+++|.++++ +..++.|.+|+..++..... ..+ ...++...+.++++++++++++++. ..+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~--~~~-~~~~~~~~~~~i~~~~~~g~l~v~~-~~~ 92 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI--CKP-EVNGYGGIPAGCQCDRDANQLFVAD-MRL 92 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE--ECC-EETTEECCEEEEEECSSSSEEEEEE-TTT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE--Eec-ccCCCCCCCceEEEecCCCcEEEEE-CCC
Confidence 345679999999988887 67788999999766511100 000 0001335688999998325545544 345
Q ss_pred cEEEEeCCCCeeeeE-Eee----ccceeEEEEeCCCCCceEEeecCCCc--------ccCCCCeEEEEEccCCCcceeee
Q 042883 402 IVTIWDVTTSQSVME-YEE----HEKRAWSVDFSCTEPSMLVSGSDDCK--------VGSADHHIHYYDLRNISQPLHVF 468 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~--------~~~~d~~i~i~d~~~~~~~~~~~ 468 (597)
.|.+||.. ++.... ... ....+.++++++ ++.++++...++. .....+.|..||.. +.. ..+
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~-~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQM-IQV 167 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCE-EEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC--CCE-EEe
Confidence 79999987 654332 211 123588999998 6777776653310 00112346777654 332 222
Q ss_pred ccCCCceEEEEec----CCC-eEEE-eeCCCcEEEEEcC-CCc-----ceeeeeCCC-CceeEEEEeecCCEEEEEeCCC
Q 042883 469 NGHKKAVSYVKFL----SNN-ELAS-ASTDSSLRLWDVK-ENL-----PLHTFRGHT-NEKNFVGLTVNNEYIACGSETN 535 (597)
Q Consensus 469 ~~~~~~v~~v~~~----~~~-~l~s-~~~d~~v~iwd~~-~~~-----~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~ 535 (597)
..+......++|+ |++ .+++ ...++.|.+||+. +++ ....+.++. ..+..++++++|.++++...++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 2233456889999 984 5544 4567899999986 343 223333333 5678899999999888887889
Q ss_pred cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe-EEEecCcccEEEEEec
Q 042883 536 EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT-MLTANRKGAIKVLVLA 596 (597)
Q Consensus 536 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-l~s~~~dg~v~iwd~~ 596 (597)
.|.+||..+++.+..+..+ ...+.+++|+|+|.+ +++...++.|..|++.
T Consensus 248 ~i~~~d~~~g~~~~~~~~~-----------~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIRCP-----------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEECTTCBSCSEEEECS-----------SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcCCCCcEeEEEeCC-----------CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 9999998877766554432 457899999999994 4556667889999875
No 213
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=9e-16 Score=145.21 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=62.6
Q ss_pred cCCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCccccccchHHHHHHHHHHH
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFPNLLLNKLLKKTS 101 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~~~l~~n~~~~~~~~~~~ 101 (597)
..+.+++.||||+++|.|||++||||+||+.||++|+.... .||+||.++...++.||..+.++++.+.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 35567899999999999999999999999999999998644 4999999999999999999999999775
No 214
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=5.7e-16 Score=111.90 Aligned_cols=57 Identities=32% Similarity=0.751 Sum_probs=51.7
Q ss_pred CCCCCccccccccccccc-------ccccccccccHHHHHHhhcCCCCCCCCCCCCccccccch
Q 042883 34 EVDRDTLCPICKQLMTDA-------FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P-------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n 90 (597)
..++++.|+||++.|.+| +.++|||+||+.||.+|+.....||+||+.+...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 456689999999999999 899999999999999999988889999999998887765
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=2.2e-13 Score=147.53 Aligned_cols=244 Identities=16% Similarity=0.109 Sum_probs=155.8
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCC-----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 328 AANIISSIEFDRDDELFASAGVS-----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
|...+..++|||||++|+.+..+ ..|++||+.++. ......+...+..++|+| + +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--------~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~ 230 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--------PLADELKWVKFSGLAWLG-N-DALLYSRFAEP 230 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--------EEEEEEEEEESCCCEEST-T-SEEEEEECCCC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------CCCccCCCceeccEEEEC-C-CEEEEEEecCc
Confidence 33478899999999999887654 469999998871 111111122235789999 5 66666665543
Q ss_pred --------------EEEEeCCCCee--eeEEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 403 --------------VTIWDVTTSQS--VMEYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 403 --------------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
|++|++.++.. ...+.. +...+.++.|+| ++.+++..+.++. .....|++||+.++...
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~--~~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGT--DPVNTVHVARVTNGKIG 307 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTT--CSCCEEEEEEEETTEEC
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccC--CCcceEEEEECCCCCCc
Confidence 89999877652 222322 333588999999 7766665554331 02457999999863112
Q ss_pred -eeeeccCCCceEEEEecCC-CeEEEeeC----CCcEEEEEcCCC--cceeeeeCCCCceeEEEEeecCCEEEEEeCCCc
Q 042883 465 -LHVFNGHKKAVSYVKFLSN-NELASAST----DSSLRLWDVKEN--LPLHTFRGHTNEKNFVGLTVNNEYIACGSETNE 536 (597)
Q Consensus 465 -~~~~~~~~~~v~~v~~~~~-~~l~s~~~----d~~v~iwd~~~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 536 (597)
...+..+...+....+ |+ +.|+..+. ++.|.+||+.++ .....+..+...+..++|+ ++.++++...|+.
T Consensus 308 ~~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 308 PVTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp CCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred ccEEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 4455445555555544 55 66766664 345999998874 2333344444556677776 5667788888988
Q ss_pred EEEEEcc-CCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE----EecCcccEEEEEec
Q 042883 537 VFVYHKA-ISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML----TANRKGAIKVLVLA 596 (597)
Q Consensus 537 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~----s~~~dg~v~iwd~~ 596 (597)
.+||.+. .++....+.++ +...+..++|+|++..|+ +....+.|++||+.
T Consensus 386 ~~l~~~~~~g~~~~~l~~~----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLP----------GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EEEEEEETTSCEEEECBCS----------SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEeCCCCceeeccCC----------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 7777654 34444434331 156788999999998766 33456889999975
No 216
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=1.1e-13 Score=134.70 Aligned_cols=244 Identities=8% Similarity=0.017 Sum_probs=162.2
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
.|.++.|++++..++..+.++.++.|.-. .......+...+.+++|++ ++.+++++..++.|.+||..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTT
T ss_pred ccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCC
Confidence 46778899988777777778889998321 1122234456678999998 677888888889999999988
Q ss_pred CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec--cCCCceEEEEecCCCeEEE
Q 042883 411 SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN--GHKKAVSYVKFLSNNELAS 488 (597)
Q Consensus 411 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~~~l~s 488 (597)
++.......+...+.+++++| ++.++++...++. ..+.|.+||..+ +.....+. .+...+..++++|++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~---~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v 150 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFK---STGGIFAATENG-DNLQDIIEDLSTAYCIDDMVFDSKGGFYF 150 (333)
T ss_dssp CCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSS---SCCEEEEECTTS-CSCEEEECSSSSCCCEEEEEECTTSCEEE
T ss_pred CcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCC---CCceEEEEeCCC-CEEEEEEccCccCCcccceEECCCCCEEE
Confidence 776554445567899999998 6777776654311 124599999876 33332222 2445789999999965555
Q ss_pred eeC-------CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEE-EEeCCCcEEEEEccC-CccccccccCCCCCC
Q 042883 489 AST-------DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIA-CGSETNEVFVYHKAI-SKPAASHRFGSDADH 559 (597)
Q Consensus 489 ~~~-------d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 559 (597)
++. .+.|..||..+++.. .+......+..++|+|+|++|+ +.+.++.|.+||+.+ +..+..+.....
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~--- 226 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP--- 226 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE---
T ss_pred EeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE---
Confidence 544 245666666544433 3322334578899999998654 445678999999864 332221100000
Q ss_pred CcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 560 VDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 560 ~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
..... ...+..++++++|.++++...++.|.+||.
T Consensus 227 ~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 227 YYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred EecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 00001 246788999999998888877889999985
No 217
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=3.7e-13 Score=126.50 Aligned_cols=217 Identities=9% Similarity=0.052 Sum_probs=158.1
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEec-CC-CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEE
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP-TR-SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEY 417 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~-~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 417 (597)
.+++|++++.++.|.+||..++ ....... +. ..+.++++.| +++++++ .++.|..||. +++.+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~p-dG~ilvs--~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATK-AGEILFS--YSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECT-TSCEEEE--CBSEEEEECT-TSCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECC-CCCEEEe--CCCCEEEECC-CCCEEEEE
Confidence 4678999999999999998777 2222222 22 3688899999 6788883 4678999998 88998888
Q ss_pred eec-cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec------cCCCceEEEEecCC-CeEEEe
Q 042883 418 EEH-EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN------GHKKAVSYVKFLSN-NELASA 489 (597)
Q Consensus 418 ~~~-~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~v~~v~~~~~-~~l~s~ 489 (597)
..+ ...+.++.+.+ +++++++.+.+ ++.|..+|.. ++.+..+. .+......+++.++ +++++.
T Consensus 72 ~~~~~~~~~~~~~~~-dG~~lv~~~~~------~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 72 AAPAGCEMQTARILP-DGNALVAWCGH------PSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp ECCTTCEEEEEEECT-TSCEEEEEEST------TEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred cCCCCccccccEECC-CCCEEEEecCC------CCEEEEEeCC--CCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 764 35788999998 77888776531 2336666653 55554443 11123445667788 778888
Q ss_pred eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcce
Q 042883 490 STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI 569 (597)
Q Consensus 490 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i 569 (597)
..++.|..||.. |+.+.++... ..+.++.+.++|+++++++.++.|..||..+|+.+..+...... ......+
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-----~~~l~~~ 215 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-----GVQLFFV 215 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-----SCCCSEE
T ss_pred cCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-----Ccccccc
Confidence 889999999988 9988888764 44567888899999999988889999999999988776521100 0013457
Q ss_pred EEEEEccCCCeEEEe
Q 042883 570 SAVCWKSDSPTMLTA 584 (597)
Q Consensus 570 ~~v~~~~~~~~l~s~ 584 (597)
.+++..++|.++++.
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 888888999888876
No 218
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=115.23 Aligned_cols=62 Identities=26% Similarity=0.575 Sum_probs=52.9
Q ss_pred ccCcCCCCCcccccccccccc----cccccccccccHHHHHHhhcCC---CCCCCCCCCCcccc---ccchH
Q 042883 30 DRDTEVDRDTLCPICKQLMTD----AFMTACGHSFCYTCIFTHLRNK---SDCPCCGCHLTCKH---IFPNL 91 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~----P~~l~CgH~FC~~Cl~~~~~~~---~~CP~Cr~~~~~~~---l~~n~ 91 (597)
...+.+++++.|+||++.|.+ |+.++|||+||+.||.+|+... ..||.||+.+...+ |..|+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~ 78 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNL 78 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECT
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHH
Confidence 345678889999999999999 9999999999999999999865 56999999987654 44554
No 219
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.57 E-value=7.2e-16 Score=131.77 Aligned_cols=70 Identities=30% Similarity=0.750 Sum_probs=60.5
Q ss_pred CcCCCCCcccccccccccccccc-cccccccHHHHHHhhcC-CCCCCCCCCCCc-cccccchHHHHHHHHHHH
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRN-KSDCPCCGCHLT-CKHIFPNLLLNKLLKKTS 101 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~-~~~CP~Cr~~~~-~~~l~~n~~~~~~~~~~~ 101 (597)
...+.+++.|+||++.|.+|+++ +|||+||+.||.+|+.. ...||.||..+. ...+.+|..+.++++.+.
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 34567788999999999999988 99999999999999986 566999999985 456999999999998764
No 220
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.57 E-value=1.2e-13 Score=149.73 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=152.5
Q ss_pred EEEEEEcCCCCEEEEeeCC---------CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 332 ISSIEFDRDDELFASAGVS---------RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
...++|||||++|+.++.+ +.+.+||+.++. ......+...+..++|+| +++.|+.+. ++.
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~--------~~~l~~~~~~~~~~~~SP-dG~~la~~~-~~~ 133 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ--------LITEERIPNNTQWVTWSP-VGHKLAYVW-NND 133 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--------ECCSSCCCTTEEEEEECS-STTCEEEEE-TTE
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc--------EEEcccCCCcceeeEECC-CCCEEEEEE-CCe
Confidence 3458899999999998875 567799998872 112223456799999999 678788775 789
Q ss_pred EEEEeCCCCeeeeE-Eeeccce-----------------eEEEEeCCCCCceEEeecCCCc-c-----------------
Q 042883 403 VTIWDVTTSQSVME-YEEHEKR-----------------AWSVDFSCTEPSMLVSGSDDCK-V----------------- 446 (597)
Q Consensus 403 i~iwd~~~~~~~~~-~~~~~~~-----------------v~~~~~~~~~~~~l~s~~~d~~-~----------------- 446 (597)
|++|++.++...+. ..++... ...+.|+| |++.|+.++.|.. +
T Consensus 134 i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~ 212 (740)
T 4a5s_A 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK 212 (740)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred EEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCc
Confidence 99999988764432 1222221 23589999 8887777654322 1
Q ss_pred ---------cCC--CCeEEEEEccC---CCc-ceeeec------cCCCceEEEEecCCCe-EEEee----CCCcEEEEEc
Q 042883 447 ---------GSA--DHHIHYYDLRN---ISQ-PLHVFN------GHKKAVSYVKFLSNNE-LASAS----TDSSLRLWDV 500 (597)
Q Consensus 447 ---------~~~--d~~i~i~d~~~---~~~-~~~~~~------~~~~~v~~v~~~~~~~-l~s~~----~d~~v~iwd~ 500 (597)
|.. ...|++||+.+ +.. ....+. +|...+..++|+|++. ++... .+..|.+||+
T Consensus 213 ~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp EEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred ceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence 111 22688999986 421 223333 3777899999999965 33332 2346999999
Q ss_pred CCCc------ceeee--eCCCCcee-----EEEEeecCCEEE-EEe-CCC--cEEEEEccCCccccccccCCCCCCCcCc
Q 042883 501 KENL------PLHTF--RGHTNEKN-----FVGLTVNNEYIA-CGS-ETN--EVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 501 ~~~~------~~~~~--~~~~~~v~-----~v~~s~~g~~l~-~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
.+++ .+..+ .++...+. .++|+|||+.|+ ..+ .+| .|++||..++....... +
T Consensus 293 ~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g--------- 362 (740)
T 4a5s_A 293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-G--------- 362 (740)
T ss_dssp ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-S---------
T ss_pred CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-C---------
Confidence 9887 12322 44555544 789999999776 554 344 68888887665543222 1
Q ss_pred CCCcceEEEEEccCCCeE-EEecC----cccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTM-LTANR----KGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l-~s~~~----dg~v~iwd~~ 596 (597)
...+..+.+ ++++.| ++++. .+..+||.++
T Consensus 363 --~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 363 --TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp --SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred --CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 334555432 335544 44444 3456666653
No 221
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=1e-15 Score=107.98 Aligned_cols=54 Identities=28% Similarity=0.700 Sum_probs=47.2
Q ss_pred CCcccccccc-ccccc----ccccccccccHHHHHHhhcCC-CCCCCCCCCCccccccch
Q 042883 37 RDTLCPICKQ-LMTDA----FMTACGHSFCYTCIFTHLRNK-SDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 37 ~~l~C~IC~~-~f~~P----~~l~CgH~FC~~Cl~~~~~~~-~~CP~Cr~~~~~~~l~~n 90 (597)
++++||||++ +|.+| ++++|||+||+.||.+|+... ..||.||+.+...+++++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4789999999 99999 468999999999999997654 559999999998887765
No 222
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.56 E-value=8.6e-13 Score=125.36 Aligned_cols=198 Identities=12% Similarity=0.171 Sum_probs=140.7
Q ss_pred CCCCcEEEEEE-cCCCCEEEEeeC-CCcEEEEecccCccCCccCCCCceEe--cCCCceeEEEEecCCCCEEEEeeCCCc
Q 042883 327 HAANIISSIEF-DRDDELFASAGV-SRRIKIFEFSSVVNEPRDVHYPMVEM--PTRSKLSCLSWNKYTKNLIASSDYDGI 402 (597)
Q Consensus 327 ~~~~~v~~i~~-~~~~~~l~t~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~~l~s~~~dg~ 402 (597)
++...+.++++ .+++.++++... ++.|.+|+.... ..... .+...+.+++++| +++++++...++.
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~---------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~ 143 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ---------FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMR 143 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC---------EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCc---------EEEEecCccCCCceEEEEeC-CCCEEEEECCCCE
Confidence 34567899999 467776666643 889999994432 11111 2345688999999 6778888777899
Q ss_pred EEEEeCCCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC--CCceEEE
Q 042883 403 VTIWDVTTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH--KKAVSYV 478 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~v 478 (597)
|.+||.. +..+..+. .+...+.+++++| ++.++++... ++.|++||.. +..+..+..+ ...+..+
T Consensus 144 i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-------~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i 212 (286)
T 1q7f_A 144 VIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-------AHCVKVFNYE--GQYLRQIGGEGITNYPIGV 212 (286)
T ss_dssp EEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-------GTEEEEEETT--CCEEEEESCTTTSCSEEEE
T ss_pred EEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC-------CCEEEEEcCC--CCEEEEEccCCccCCCcEE
Confidence 9999964 55555553 3345689999999 7777777664 3459999975 4555555433 3678999
Q ss_pred EecCC-CeEEEeeCCC-cEEEEEcCCCcceeeeeCCCC--ceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 479 KFLSN-NELASASTDS-SLRLWDVKENLPLHTFRGHTN--EKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 479 ~~~~~-~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~--~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
+++++ ..+++...++ .|.+||. +++.+..+..+.. .+..++++|+|+++++ +.|+.|++|++....+
T Consensus 213 ~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 213 GINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 99999 4455555665 9999995 4666777765433 3678999999987776 5789999999765443
No 223
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.56 E-value=7.9e-16 Score=104.11 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=42.5
Q ss_pred CCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCcccc
Q 042883 36 DRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKH 86 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 86 (597)
.++++|+||++.|.+|++++|||+||+.||.+ ....||+||+.+..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecCC
Confidence 56899999999999999999999999999977 3456999999987654
No 224
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=103.07 Aligned_cols=48 Identities=25% Similarity=0.791 Sum_probs=42.1
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhc---CCCCCCCC
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR---NKSDCPCC 78 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~---~~~~CP~C 78 (597)
..+.+++++.|+||++.|.+|++++|||+||+.||.+|+. ....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4456778999999999999999999999999999999965 44569998
No 225
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-15 Score=108.04 Aligned_cols=54 Identities=30% Similarity=0.736 Sum_probs=48.1
Q ss_pred cCcCCCCCccccccccccccc-------ccccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 31 RDTEVDRDTLCPICKQLMTDA-------FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P-------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
....+.+++.|+||++.|.+| +.++|||.||+.||.+|+.....||+||+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345667789999999999998 889999999999999999988889999998763
No 226
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.54 E-value=5.9e-16 Score=126.89 Aligned_cols=68 Identities=22% Similarity=0.626 Sum_probs=54.7
Q ss_pred cCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCccc---------cccchHHHHHHHH
Q 042883 31 RDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCK---------HIFPNLLLNKLLK 98 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~~---------~l~~n~~~~~~~~ 98 (597)
..+.++++++|+||+++|.+|++++|||+||+.||.+|+.... .||+||...... .+.++..+...+.
T Consensus 24 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 24 LGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp TGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred hhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 3467889999999999999999999999999999999998654 699999975322 3446655555544
No 227
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=1.7e-12 Score=129.40 Aligned_cols=246 Identities=10% Similarity=0.105 Sum_probs=162.5
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC--cEEEE
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG--IVTIW 406 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg--~i~iw 406 (597)
-.....++|++++.++++...++.|++||..++ ............. ++|++ +++.|+++..++ .|.+|
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--------~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~ 199 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--------KVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVY 199 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTT--------EEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCC--------EEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEE
Confidence 346889999999998888877899999998865 1111112223334 89999 677787777665 78888
Q ss_pred eCCCCeeeeEE----eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-----ccCCCce-E
Q 042883 407 DVTTSQSVMEY----EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-----NGHKKAV-S 476 (597)
Q Consensus 407 d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~v-~ 476 (597)
+...+.....+ ......+.+++++|.++.+++ +.. ++.|+.||... +. ...+ .++...- .
T Consensus 200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~-------~~~I~~~d~~~-~~-~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDS-------NKNFGRFNVKT-QE-VTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECT-------TCEEEEEETTT-CC-EEEEEECCCCSCCCCSSC
T ss_pred EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EEC-------CCcEEEEECCC-CC-EEEEecccccCCCCCCcc
Confidence 87655443333 214456889999995566665 432 45599999885 22 2222 1222222 3
Q ss_pred -EEEecCC-CeE-EEeeCCCcEEEEEcCCCcceeeeeCCC---------------CceeEEEEeecCCEEEEEe-CCCcE
Q 042883 477 -YVKFLSN-NEL-ASASTDSSLRLWDVKENLPLHTFRGHT---------------NEKNFVGLTVNNEYIACGS-ETNEV 537 (597)
Q Consensus 477 -~v~~~~~-~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~---------------~~v~~v~~s~~g~~l~~~~-~d~~i 537 (597)
.++|+|+ +.| ++...++.|+.||.... +..+.++. .....++++++|.++++.+ .++.|
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 9999995 554 55566788999997643 33333322 3468899999999888887 88999
Q ss_pred EEEEccCCccccccccCCCCCCCc---CcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 538 FVYHKAISKPAASHRFGSDADHVD---DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 538 ~iwd~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+.|++.++........+....... ....-..+.+|+++++|.++++...++.|+.++++
T Consensus 348 ~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 348 RKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 999977775432221111000000 00113468999999999888998899999988874
No 228
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.54 E-value=1.6e-15 Score=121.16 Aligned_cols=72 Identities=28% Similarity=0.581 Sum_probs=58.4
Q ss_pred cccccCcCCCCCcccccccccccccccccccccccHHHHHHhhcC-CCCCCCCCCCCcccccc-chHHHHHHHH
Q 042883 27 VEVDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRN-KSDCPCCGCHLTCKHIF-PNLLLNKLLK 98 (597)
Q Consensus 27 ~~~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~-~~~CP~Cr~~~~~~~l~-~n~~~~~~~~ 98 (597)
+.......+.+++.|+||++.|.+|++++|||+||+.||.+|+.. ...||.||..+...++. ++..+..+++
T Consensus 12 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 12 LAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN 85 (116)
T ss_dssp BSSCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred hhhhhHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHH
Confidence 333445567778999999999999999999999999999999986 56799999999988765 4455555544
No 229
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=4.1e-15 Score=109.42 Aligned_cols=60 Identities=28% Similarity=0.584 Sum_probs=51.5
Q ss_pred cCcCCCCCccccccccccccc---ccccccccccHHHHHHhhcCCCCCCCCCCCCccccccch
Q 042883 31 RDTEVDRDTLCPICKQLMTDA---FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 31 ~~~~~~~~l~C~IC~~~f~~P---~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n 90 (597)
..+.+.+++.|+||++.|.+| +.++|||.||+.||.+|+.....||+||+.+...++.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 345667789999999999977 457999999999999999988889999999988776654
No 230
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.51 E-value=2.5e-15 Score=106.07 Aligned_cols=54 Identities=33% Similarity=0.782 Sum_probs=48.9
Q ss_pred CCccccccccccccc-------ccccccccccHHHHHHhhcCCCCCCCCCCCCccccccch
Q 042883 37 RDTLCPICKQLMTDA-------FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P-------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n 90 (597)
+++.|+||++.|.+| +.++|||.||..||.+|+.....||.||+.+...++.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 578999999999998 889999999999999999988889999999988776654
No 231
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=1.7e-12 Score=125.77 Aligned_cols=221 Identities=7% Similarity=-0.017 Sum_probs=154.5
Q ss_pred CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEE
Q 042883 349 VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVD 428 (597)
Q Consensus 349 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 428 (597)
.++.|.+||..++........ .............+.+. ++.++++...++.|.+||..+++.+..+. ....+..++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~-~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFY-RANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHH-HHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHh-hhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 378999999987621110000 00000112345677775 46677777778999999999999988885 346788999
Q ss_pred eCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC-----CceEEEEecCCCeEEEee--CCCcEEEEEcC
Q 042883 429 FSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK-----KAVSYVKFLSNNELASAS--TDSSLRLWDVK 501 (597)
Q Consensus 429 ~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~v~~~~~~~l~s~~--~d~~v~iwd~~ 501 (597)
+++ ++.++++... ++.|.+||+.+ ++....+.... .....+++ .++.++++. .++.|.+||+.
T Consensus 91 ~~~-~g~lyv~~~~-------~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 91 FLS-DEKAYVTQIW-------DYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp EEE-TTEEEEEEBS-------CSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred EeC-CCeEEEEECC-------CCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence 987 5666666543 45599999987 55555554222 14567777 456666555 48899999999
Q ss_pred CCcceeeeeCCCCceeEEEEeecCCEEEEEeCC----------CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEE
Q 042883 502 ENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET----------NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISA 571 (597)
Q Consensus 502 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 571 (597)
+++.+..+... .....+.++|+|++++++..+ +.|.+||..+++....+..+. ...+..
T Consensus 161 t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~----------g~~p~~ 229 (328)
T 3dsm_A 161 TDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL----------GDWPSE 229 (328)
T ss_dssp TTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT----------TCCCEE
T ss_pred CCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC----------CCCcee
Confidence 99888887653 345789999999977776554 789999999888776655421 235889
Q ss_pred EEEccCCCeEEEecCcccEEEEEec
Q 042883 572 VCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 572 v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++|+|++++|+++.. .|.+||+.
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETT
T ss_pred EEEecCCCEEEEEcc--EEEEEECC
Confidence 999999999888765 88888875
No 232
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=1.4e-11 Score=127.22 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=161.1
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecc--cCccCCccCCCCceEecCCCceeEEEEe----cCCCCEEEE-eeCCC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFS--SVVNEPRDVHYPMVEMPTRSKLSCLSWN----KYTKNLIAS-SDYDG 401 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~i~~v~~~----~~~~~~l~s-~~~dg 401 (597)
...+..+.|+|||+++++++.++.|.+||+. +. ..............++|+ | +++++++ ...++
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--------~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~ 266 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--------TTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPP 266 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------CEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETT
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--------cEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCC
Confidence 3456799999999999999999999999985 33 222233334457789999 6 5665555 45669
Q ss_pred cEEEEeCCCCeeeeEEee----------cc-ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc
Q 042883 402 IVTIWDVTTSQSVMEYEE----------HE-KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG 470 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~ 470 (597)
.|.|+|..+.+.+..+.. |. ..+..+..++.+..++++... .|.|.++|.............
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~-------~g~v~~vd~~~~~~~~v~~i~ 339 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-------TGKILLVDYTDLNNLKTTEIS 339 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-------TTEEEEEETTCSSEEEEEEEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC-------CCeEEEEecCCCccceeeeee
Confidence 999999999888877642 11 257788888855556665543 456999998753222111112
Q ss_pred CCCceEEEEecCC-CeEEE-eeCCCcEEEEEcCCCcceeeeeC-CCCc--eeEEE-EeecCC-EEEEEe-CCCcEEEEEc
Q 042883 471 HKKAVSYVKFLSN-NELAS-ASTDSSLRLWDVKENLPLHTFRG-HTNE--KNFVG-LTVNNE-YIACGS-ETNEVFVYHK 542 (597)
Q Consensus 471 ~~~~v~~v~~~~~-~~l~s-~~~d~~v~iwd~~~~~~~~~~~~-~~~~--v~~v~-~s~~g~-~l~~~~-~d~~i~iwd~ 542 (597)
.......+.|+|+ .++++ ...++.|.+||+.+++.+..+.. ...+ -..+. ++|++. .++++. .++.|.+||.
T Consensus 340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecC
Confidence 3345678899999 55544 44678999999999987776653 1111 12233 578744 444443 4689999999
Q ss_pred cC-------CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC-------cccEEEEEecC
Q 042883 543 AI-------SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR-------KGAIKVLVLAA 597 (597)
Q Consensus 543 ~~-------~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~-------dg~v~iwd~~~ 597 (597)
.+ .+.+..+... ...-..|..+|+++++.+... .++|.|||+.+
T Consensus 420 ~~~~~~~~~~kvv~~i~~~-----------g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 420 DPEGHPDNAWKILDSFPAL-----------GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp CTTTCTTTBTSEEEEEECS-----------CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CCCCCccccCEEEEEEecC-----------CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 87 3444444421 122345778999999888652 46899999763
No 233
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=3.2e-11 Score=115.12 Aligned_cols=235 Identities=5% Similarity=-0.022 Sum_probs=159.1
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEe-cCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEM-PTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+...+.+++++++|.++++...++.|..|+.... ...... .....+.++++.+ ++.++++...++.|.+|
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~ 125 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--------IKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRI 125 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--------EEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEE
Confidence 3467999999999998887777888999987522 001111 1345788999998 67777777778899999
Q ss_pred eCCCCeeeeE-EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCCC
Q 042883 407 DVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSNN 484 (597)
Q Consensus 407 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~~ 484 (597)
|. ++..... .......+..+++.+ ++.++++... ++.|..||. + +..... .......+..+++++++
T Consensus 126 d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-------~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g 194 (299)
T 2z2n_A 126 TD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQ-------NNAIGRITE-S-GDITEFKIPTPASGPVGITKGNDD 194 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT-------TTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTS
T ss_pred CC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCC-------CCEEEEEcC-C-CcEEEeeCCCCCCcceeEEECCCC
Confidence 98 5544322 222345689999998 6777776553 344899998 4 433322 23344568899999985
Q ss_pred eEEEe-eCCCcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 485 ELASA-STDSSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 485 ~l~s~-~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
.+..+ ..++.|.+||. +++.... ...+...+.+++++++|.++++...++.|.+||. ++.. ..+...
T Consensus 195 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~-------- 263 (299)
T 2z2n_A 195 ALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ-------- 263 (299)
T ss_dssp SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS--------
T ss_pred CEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC--------
Confidence 55444 45788999998 6654322 2234467889999999997776667889999998 4432 222211
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+...+.++++ ++|.++++.. .+.|..++..
T Consensus 264 -~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 264 -IKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp -SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred -CCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 12456899999 8888777766 4556666654
No 234
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=1.6e-12 Score=127.54 Aligned_cols=219 Identities=8% Similarity=-0.032 Sum_probs=144.9
Q ss_pred CCcEEEEEEcCCCCEEEEeeC--CCcEEEEecccCccCCccCCCCceE-ecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 329 ANIISSIEFDRDDELFASAGV--SRRIKIFEFSSVVNEPRDVHYPMVE-MPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~--d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
......++|+|+|++|+++.. ++.|.+||+.+. ..... ... .....+.+.|.+...+++.+.||.+.+
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--------~~~~~~i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--------DYVEDVTAA-AGCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--------EEEEEEGGG-TTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC--------cEEEEEecC-CCcceeEEcCCCCeeEEEECCCCcEEE
Confidence 345667999999999998864 589999999876 11222 222 122336677755678888899999999
Q ss_pred EeCCC-CeeeeEE------eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-eeeecc------C
Q 042883 406 WDVTT-SQSVMEY------EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LHVFNG------H 471 (597)
Q Consensus 406 wd~~~-~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~~~~~------~ 471 (597)
|++.. ++..... .....+ ..+.+++ ++..++..+. ++.|+++|+...... +..+.. +
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~-------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSY-------YGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBT-------TSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred EEECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeC-------CCeEEEEEecCCCceecccccccCccccc
Confidence 99865 4443111 111111 1223344 3333443443 455999998642211 111110 0
Q ss_pred C----CceEEEEecCC-CeEEEeeC-----------CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC
Q 042883 472 K----KAVSYVKFLSN-NELASAST-----------DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN 535 (597)
Q Consensus 472 ~----~~v~~v~~~~~-~~l~s~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 535 (597)
. .....++++|+ +.++++.. ++.|.+||+.+++.+.++..+. +.+++|+|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 0 11123788998 66665432 3479999999999999998776 899999999999998886 9
Q ss_pred cEEEEEccCC--ccccccccCCCCCCCcCcCCCcceEEEEEccCCC
Q 042883 536 EVFVYHKAIS--KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP 579 (597)
Q Consensus 536 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~ 579 (597)
.|.+||..++ +.+..+.. +......++++|+|.
T Consensus 326 ~v~v~D~~t~~l~~~~~i~~-----------~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRTIEG-----------AAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEEEEEETT-----------SCSSEEEEEECCCSC
T ss_pred eEEEEECCCCcceeeEEecc-----------CCCCcEEEEecCCCC
Confidence 9999999999 77766521 155678899999986
No 235
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=1.5e-14 Score=98.27 Aligned_cols=50 Identities=30% Similarity=0.688 Sum_probs=45.3
Q ss_pred CCCCCcccccccccccc---ccccc-ccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 34 EVDRDTLCPICKQLMTD---AFMTA-CGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~---P~~l~-CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
+++++..|+||++.|.+ ++.++ |||.||..||.+|+.....||.||+.+.
T Consensus 1 a~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 36778999999999998 78888 9999999999999998888999998764
No 236
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=105.08 Aligned_cols=55 Identities=22% Similarity=0.532 Sum_probs=48.0
Q ss_pred ccCcCCCCCccccccccccccc---ccccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 30 DRDTEVDRDTLCPICKQLMTDA---FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P---~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
.......++..|+||++.|.++ +.++|||.||..||.+|+.....||+||+.+..
T Consensus 15 ~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 15 NPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3445566788999999999988 889999999999999999988889999998764
No 237
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=1.6e-11 Score=126.72 Aligned_cols=231 Identities=13% Similarity=0.085 Sum_probs=161.3
Q ss_pred CCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC--CCeeeeE
Q 042883 339 RDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT--TSQSVME 416 (597)
Q Consensus 339 ~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~ 416 (597)
+.+.++++...++.|.+||..++ ...........+..+.|+| +++++++++.|+.|.+||+. +++.+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTY--------EIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC--------CEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCC--------eEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence 44556777778999999999876 3333334445677899999 78899999999999999995 7777777
Q ss_pred EeeccceeEEEEeC----CCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc----------C-CCceEEEEec
Q 042883 417 YEEHEKRAWSVDFS----CTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG----------H-KKAVSYVKFL 481 (597)
Q Consensus 417 ~~~~~~~v~~~~~~----~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~-~~~v~~v~~~ 481 (597)
+.. ......++|+ | +++++++++. .++.|.+||..+ .+++..+.. | ...+..+..+
T Consensus 236 i~~-G~~P~~ia~s~~~~p-DGk~l~v~n~------~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 236 IKI-GSEARSIETSKMEGW-EDKYAIAGAY------WPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp EEC-CSEEEEEEECCSTTC-TTTEEEEEEE------ETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred Eec-CCCCceeEEccccCC-CCCEEEEEEc------cCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEc
Confidence 754 3457899999 6 6766666653 345699999887 666665532 1 1257788888
Q ss_pred CC-C-eEEEeeCCCcEEEEEcCCCcce--eeeeCCCCceeEEEEeecCCEEEEEe-CCCcEEEEEccCCcccccccc-CC
Q 042883 482 SN-N-ELASASTDSSLRLWDVKENLPL--HTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAISKPAASHRF-GS 555 (597)
Q Consensus 482 ~~-~-~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~ 555 (597)
++ . .++....+|.|.++|....+.+ ..+. .......+.|+|+|++++++. .++.|.+||+.+++.+..... +.
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 87 3 3555667799999998765422 2222 234566889999999887665 578999999999988777665 32
Q ss_pred CCCCCcCcCCCc-ceEEEEEccCC-CeEEEec-CcccEEEEEecC
Q 042883 556 DADHVDDDMGSY-FISAVCWKSDS-PTMLTAN-RKGAIKVLVLAA 597 (597)
Q Consensus 556 ~~~~~~~~~h~~-~i~~v~~~~~~-~~l~s~~-~dg~v~iwd~~~ 597 (597)
. .|.+ .+. + ++|++ ..++++. .++.|.|+|.++
T Consensus 386 ~-------Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 386 T-------PHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp S-------BCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred C-------CCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 1 1222 222 2 57874 4455553 568999999764
No 238
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=4.4e-11 Score=114.18 Aligned_cols=237 Identities=7% Similarity=-0.018 Sum_probs=161.5
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
....+.+++++++|.+.++...++.|.+|+.. +... ..........+.++++.+ +++++++...++.|..||
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK------EFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLS 89 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE------EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE------EEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEEC
Confidence 45678999999999988877778999999977 3110 000112235788999998 677777766678899999
Q ss_pred CCCCeeee-EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee-eeccCCCceEEEEecCCCe
Q 042883 408 VTTSQSVM-EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH-VFNGHKKAVSYVKFLSNNE 485 (597)
Q Consensus 408 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~v~~~~~~~ 485 (597)
.. +.... .+......+.++++.+ ++.++++... ++.|..||.. +.... .+......+..+++.+++.
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-------~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g~ 158 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLN-------GDRIGKLTAD--GTIYEYDLPNKGSYPAFITLGSDNA 158 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETT-------TTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSS
T ss_pred CC-CCeEEecCCCCCCCCccceECC-CCCEEEEccC-------CCeEEEECCC--CCEEEccCCCCCCCceeEEECCCCC
Confidence 87 54432 2222346789999998 7777776653 3448888876 23222 2233446789999999854
Q ss_pred EEEe-eCCCcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 486 LASA-STDSSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 486 l~s~-~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
+..+ ..++.|..||. +++.... .......+..++++++|.++++...++.|.+||. +++.... ...
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~--------- 226 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP--------- 226 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS---------
T ss_pred EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC---------
Confidence 5444 45778999998 5554332 2233456789999999987777767788999998 4443322 111
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.+...+.+++++++|.++++...++.|.+||.
T Consensus 227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 TPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 12456889999999998777777788888874
No 239
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=125.10 Aligned_cols=73 Identities=29% Similarity=0.656 Sum_probs=63.4
Q ss_pred cccCcCCCCCcccccccccccccccccccccccHHHHHHhhcCCC-CCCCCCCCCccccccchHHHHHHHHHHH
Q 042883 29 VDRDTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS-DCPCCGCHLTCKHIFPNLLLNKLLKKTS 101 (597)
Q Consensus 29 ~~~~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~-~CP~Cr~~~~~~~l~~n~~~~~~~~~~~ 101 (597)
....+.+++++.|+||+++|.+|++++|||+||+.||.+|+.... .||.||..+...++.++..+.+++..+.
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 9 VEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp SEESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred hhhccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 335668899999999999999999999999999999999997654 7999999999888888888877776543
No 240
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=2.3e-11 Score=116.07 Aligned_cols=228 Identities=6% Similarity=0.012 Sum_probs=151.5
Q ss_pred CcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 330 NIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 330 ~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
.-.-+..|+++ +.++++...++.|..||..++ . .........+.++++++ +++++++ . ++.|.+||.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~--------~-~~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK--------Q-VQRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTC--------C-EEEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEET
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCC--------c-EEEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEEC
Confidence 34557889995 556667777899999998865 1 12233456799999999 5665444 4 568999999
Q ss_pred CCCeeeeEEee----ccceeEEEEeCCCCCceEEeecCCCcc----cCCCCeEEEEEccCCCcceeeeccCCCceEEEEe
Q 042883 409 TTSQSVMEYEE----HEKRAWSVDFSCTEPSMLVSGSDDCKV----GSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKF 480 (597)
Q Consensus 409 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~~----~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~ 480 (597)
.+++....... ....+++++++| ++.++++...+... ....+.|+.+|.. +.. ..+..+......++|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~-~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD--HHV-KKYFDQVDISNGLDW 156 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SCE-EEEEEEESBEEEEEE
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC--CCE-EEEeeccccccceEE
Confidence 87765433221 124588999999 67766654322110 0112334444443 332 223333455789999
Q ss_pred cCC-CeE-EEeeCCCcEEEEEc--CCCcc-----eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 481 LSN-NEL-ASASTDSSLRLWDV--KENLP-----LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 481 ~~~-~~l-~s~~~d~~v~iwd~--~~~~~-----~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
+|+ ..+ ++.+.++.|.+||+ .++.. +..+..+...+..++++++|++.++...++.|.+||..+++.+..+
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 999 444 55666889999997 34432 2223333456788999999988887777889999999989888777
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEc-cCCCeEEEe
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWK-SDSPTMLTA 584 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~-~~~~~l~s~ 584 (597)
..+ ...+++++|. |+++.|+.+
T Consensus 237 ~~p-----------~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 237 KLP-----------VDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp ECS-----------SSBEEEEEEESGGGCEEEEE
T ss_pred ECC-----------CCCceEEEEeCCCCCEEEEE
Confidence 653 4579999998 888766544
No 241
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=6e-12 Score=122.25 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=133.3
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCcc----CCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVN----EPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~----~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
+++.+++++...++++|+.++ +.+|++..... .... ..+........ |+.|+| +++.|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~-~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP-LTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC-CCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc-ccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 689999999999999999875 55699765420 0011 12323445566 999999 47888888 78999999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeE
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNEL 486 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l 486 (597)
|+.+.........+..++.++.+.+. + +++++. ||.|.+||+.. +.... +...|++++|+|.+ +
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~-------dG~L~v~dl~~-~~~~~----~~~~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNS-------VNDLSALDLRT-KSTKQ----LAQNVTSFDVTNSQ-L 175 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEET-------TSEEEEEETTT-CCEEE----EEESEEEEEECSSE-E
T ss_pred EchhhhccCccceeecceeeEEecCC--C-EEEEEC-------CCCEEEEEccC-Ccccc----ccCCceEEEEcCCc-e
Confidence 99876655566677788998888752 3 666664 55599999986 33322 34589999999999 7
Q ss_pred EEeeCCCcEEEEEcCCCcc--eeee------e---CCCCceeEEEEeecCCEEEEE
Q 042883 487 ASASTDSSLRLWDVKENLP--LHTF------R---GHTNEKNFVGLTVNNEYIACG 531 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~~--~~~~------~---~~~~~v~~v~~s~~g~~l~~~ 531 (597)
+.|..||++++|+...+.. ..++ . +|...|.+|.|.+++.++++-
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 8899999999999887664 4555 2 367889999999999988763
No 242
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=6e-12 Score=120.15 Aligned_cols=196 Identities=7% Similarity=-0.020 Sum_probs=136.0
Q ss_pred cCCCceeEEEEecCCCC-EEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEE
Q 042883 376 PTRSKLSCLSWNKYTKN-LIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIH 454 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~ 454 (597)
.+.....+++|+| +++ +++++..++.|..||..++ ...+..+...+.+++++| ++.++++... ++.|.
T Consensus 25 ~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~-------~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHG-------LRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETT-------TTEEE
T ss_pred cCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecC-------CCeEE
Confidence 4456678999999 555 8888888999999999876 566666777899999999 7777777653 34499
Q ss_pred EEEccCCCcceeeecc----CCCceEEEEecCCCeE-EE----eeC-------------CCcEEEEEcCCCcceeeeeCC
Q 042883 455 YYDLRNISQPLHVFNG----HKKAVSYVKFLSNNEL-AS----AST-------------DSSLRLWDVKENLPLHTFRGH 512 (597)
Q Consensus 455 i~d~~~~~~~~~~~~~----~~~~v~~v~~~~~~~l-~s----~~~-------------d~~v~iwd~~~~~~~~~~~~~ 512 (597)
+||..+ +........ ....+..++++|++.+ ++ |+. .+.|..||.. ++ +..+..+
T Consensus 94 ~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~ 170 (296)
T 3e5z_A 94 RQREPG-GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRD 170 (296)
T ss_dssp EECSTT-CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECC
T ss_pred EEcCCC-CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecC
Confidence 999865 433222221 1234678999999554 44 331 3455556554 43 4445555
Q ss_pred CCceeEEEEeecCCEEEEEeCCCcEEEEEcc-CCcc-ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccE
Q 042883 513 TNEKNFVGLTVNNEYIACGSETNEVFVYHKA-ISKP-AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAI 590 (597)
Q Consensus 513 ~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v 590 (597)
...+..++|+|+|+++++.+.++.|++|++. ++.. .....+. .+...+.+++++++|.++++. ++.|
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~---------~~~~~p~~i~~d~~G~l~v~~--~~~v 239 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT---------VEPGKTDGLRVDAGGLIWASA--GDGV 239 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC---------CSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee---------CCCCCCCeEEECCCCCEEEEc--CCeE
Confidence 6677899999999988777778999999987 4443 1111111 014457789999999877776 7789
Q ss_pred EEEEec
Q 042883 591 KVLVLA 596 (597)
Q Consensus 591 ~iwd~~ 596 (597)
.+||.+
T Consensus 240 ~~~~~~ 245 (296)
T 3e5z_A 240 HVLTPD 245 (296)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999853
No 243
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=2.6e-12 Score=120.67 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=141.2
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeeEEeecc-ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHE-KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 391 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
+++|++++.++.|.+||..+|+.+..+..+. ..+.++.++| +++++++. ++.|+.||. + ++.+..+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs~---------~~~V~~~d~-~-G~~~W~~~ 72 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFSY---------SKGAKMITR-D-GRELWNIA 72 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEEC---------BSEEEEECT-T-SCEEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEeC---------CCCEEEECC-C-CCEEEEEc
Confidence 6899999999999999998999999998765 4789999999 78888842 344899998 4 67777776
Q ss_pred cC-CCceEEEEecCC-CeEEEeeC-CCcEEEEEcCCCcceeeeeC------CCCceeEEEEeecCCEEEEEeCCCcEEEE
Q 042883 470 GH-KKAVSYVKFLSN-NELASAST-DSSLRLWDVKENLPLHTFRG------HTNEKNFVGLTVNNEYIACGSETNEVFVY 540 (597)
Q Consensus 470 ~~-~~~v~~v~~~~~-~~l~s~~~-d~~v~iwd~~~~~~~~~~~~------~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 540 (597)
.+ ...+.++.+.++ +.+++.+. ++.|..+|. +++.+..+.. +......+++.++|++|++...++.|..|
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 54 357888999999 66676666 778888885 6777766642 11234567788999999999999999999
Q ss_pred EccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 541 HKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 541 d~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|.. |+.+..+..+ ..+.++.+.++|.++++++.++.|..||.+
T Consensus 152 d~~-G~~~w~~~~~------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 152 APN-GQLLNSVKLS------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CTT-SCEEEEEECS------------SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCC-CCEEEEEECC------------CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 988 8888777642 245567888999999998888888887754
No 244
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=3.8e-11 Score=117.87 Aligned_cols=236 Identities=8% Similarity=-0.005 Sum_probs=151.0
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecccCccCCccCCCC-ceEecCCCceeEEEEecCCCCEEEEeeC--C
Q 042883 334 SIEFDRDDELFASAG----------VSRRIKIFEFSSVVNEPRDVHYP-MVEMPTRSKLSCLSWNKYTKNLIASSDY--D 400 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~----------~d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~~l~s~~~--d 400 (597)
.++|+|||++++++. .++.|.+||..+..... ..... ............++|+| ++++|+++.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~-~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA-DIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE-EEECCCccccccCCCccceEECC-CCCEEEEEecCCC
Confidence 899999999998885 36789999997651100 00000 00000012355799999 6788877763 5
Q ss_pred CcEEEEeCCCCeeeeE-EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-----cCCCc
Q 042883 401 GIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-----GHKKA 474 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~ 474 (597)
+.|.++| .+++.+.. +.. ... +.+.|.+...+++.+.| |.+.+||. . ++...... ....+
T Consensus 148 ~~v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~d-------g~~~~vd~-~-g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQ-------GGLAKTDH-A-GGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEEEcCC-------CCEEEEEC-C-CcEEEEEeccccccCCcc
Confidence 7899999 99988777 532 222 34445455566666544 44899998 5 44442211 11111
Q ss_pred e-EEEEecCC-CeEEEeeCCCcEEEEEcCCCc--ceeeeeC----------CCCceeEEEEeecCCEEEEEeC-------
Q 042883 475 V-SYVKFLSN-NELASASTDSSLRLWDVKENL--PLHTFRG----------HTNEKNFVGLTVNNEYIACGSE------- 533 (597)
Q Consensus 475 v-~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~----------~~~~v~~v~~s~~g~~l~~~~~------- 533 (597)
+ ....+.++ +.++..+..+.+.++|+.++. .+..+.. .......+.++|+|+.++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 1 22344555 454444577899999987542 2222211 0122344789999887777543
Q ss_pred ---CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEec-CcccEEEEEecC
Q 042883 534 ---TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTAN-RKGAIKVLVLAA 597 (597)
Q Consensus 534 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~-~dg~v~iwd~~~ 597 (597)
++.|.++|..+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+
T Consensus 294 ~~~~~~V~VID~~t~~vv~~i~~------------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTSSQISL------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred cCCCCeEEEEECCCCEEEEEEEC------------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 35799999999999888875 33588999999999 777776 589999999864
No 245
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=1.1e-11 Score=132.86 Aligned_cols=240 Identities=17% Similarity=0.177 Sum_probs=151.7
Q ss_pred CCCcEEEEEEcCCCCEEEEe-----eCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC-
Q 042883 328 AANIISSIEFDRDDELFASA-----GVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG- 401 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg- 401 (597)
|...+..++|||||++||.+ +....|++||+.++. .............++|+ + ++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--------~~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~~ 196 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--------PLETPLKDVKFSGISWL-G-NEGFFYSSYDKP 196 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--------EEEEEEEEEESCCCEEE-T-TTEEEEEESSCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--------CCccccCCceeccEEEe-C-CCEEEEEEecCc
Confidence 55688999999999998853 333679999999871 11111111113567899 5 55565555553
Q ss_pred ------------cEEEEeCCCCee----eeEEee-ccceeEEEEeCCCCCceE-EeecCCCcccCCCCeEEEEEccCCCc
Q 042883 402 ------------IVTIWDVTTSQS----VMEYEE-HEKRAWSVDFSCTEPSML-VSGSDDCKVGSADHHIHYYDLRNISQ 463 (597)
Q Consensus 402 ------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l-~s~~~d~~~~~~d~~i~i~d~~~~~~ 463 (597)
.|++|++.++.. +..... +...+.++.|+| ++.++ ++.+.+. ..+.|+++|+.++..
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~----~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANST----SGNRLYVKDLSQENA 271 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSS----SCCEEEEEETTSTTC
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCC----CCcEEEEEECCCCCC
Confidence 499999877642 222223 444578899999 56555 4443322 245799999987443
Q ss_pred ceeeeccCCCceEEEEecCC-CeEE-EeeCC---CcEEEEEcCCCcc--eeeeeCCCCceeEEEEeecCCEEEEEeC-CC
Q 042883 464 PLHVFNGHKKAVSYVKFLSN-NELA-SASTD---SSLRLWDVKENLP--LHTFRGHTNEKNFVGLTVNNEYIACGSE-TN 535 (597)
Q Consensus 464 ~~~~~~~~~~~v~~v~~~~~-~~l~-s~~~d---~~v~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~ 535 (597)
....+..+....... |+++ +.|+ +...+ +.|.+||+.++.. ...+..|...+. .|+++|++|+.... ++
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence 455565566655555 4444 5544 44333 5799999987654 345666665554 89999998877655 43
Q ss_pred --cEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc----ccEEEEEec
Q 042883 536 --EVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK----GAIKVLVLA 596 (597)
Q Consensus 536 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d----g~v~iwd~~ 596 (597)
.|++||+..+ ....+.++ +...+..+.+++++..|+....+ +.|..||+.
T Consensus 349 ~~~l~~~d~~g~-~~~~l~~p----------~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 349 TARVEQFDYEGK-RVREVALP----------GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEEEEECTTSC-EEEEECCS----------SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eeEEEEEECCCC-eeEEeecC----------CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 6889998744 33333332 14567788888888876654433 778888764
No 246
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.44 E-value=8.1e-12 Score=117.43 Aligned_cols=201 Identities=6% Similarity=-0.034 Sum_probs=138.0
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...+.+++++++|.++++.. ++.|.+|+..+... ..........+.++++++ +++++++...++.|.+|+.
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~ 136 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-------TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAA 136 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-------EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECT
T ss_pred cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-------eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEEC
Confidence 34678899999998666655 88999999876411 011112235688999998 6777777777889999986
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCe-EE
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNE-LA 487 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~ 487 (597)
.+.............+.++++++ ++.++++... ++.|.+||... .........+...+..+++++++. ++
T Consensus 137 ~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-------~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g~l~v 207 (270)
T 1rwi_B 137 GSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-------NNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAGTVYV 207 (270)
T ss_dssp TCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGG-------GTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTCCEEE
T ss_pred CCceeEeeccccCCCceeEEEeC-CCCEEEEECC-------CCEEEEEecCC-CceEeecccCCCCceEEEECCCCCEEE
Confidence 55433322222334678999998 6677776653 34599999875 332222223336789999999954 45
Q ss_pred EeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 488 SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 488 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
+...++.|.+||..+.........+...+.+++++++|+++++...++.|++|++...+.
T Consensus 208 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 208 TEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 555678999999876543332223335678999999999888888899999999865543
No 247
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-14 Score=103.49 Aligned_cols=54 Identities=28% Similarity=0.658 Sum_probs=48.1
Q ss_pred CcCCCCCcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCcccc
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKH 86 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 86 (597)
...+.+++.|+||++.|.+ +.++|||.||..||.+|+.....||.||+.+...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3566778999999999999 99999999999999999998888999999887544
No 248
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=7.9e-14 Score=99.67 Aligned_cols=53 Identities=28% Similarity=0.627 Sum_probs=45.8
Q ss_pred CcCCCCCccccccccccc---ccccccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 32 DTEVDRDTLCPICKQLMT---DAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~---~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
.....++..|+||++.|. .++.++|||.||..||.+|+.....||+||+.+..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 345566789999999995 46889999999999999999988889999998864
No 249
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.42 E-value=4.7e-14 Score=106.54 Aligned_cols=52 Identities=29% Similarity=0.674 Sum_probs=46.6
Q ss_pred cCCCCCcccccccccccc---cccccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 33 TEVDRDTLCPICKQLMTD---AFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~---P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
....++..|+||++.|.+ ++.++|||.||..||..|+.....||+||..+..
T Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 35 GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 356678999999999998 8899999999999999999988889999998763
No 250
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.42 E-value=3.4e-11 Score=129.80 Aligned_cols=203 Identities=7% Similarity=-0.001 Sum_probs=134.1
Q ss_pred CceeEEEEecCCCCEEEEeeCC-C----cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCccc------
Q 042883 379 SKLSCLSWNKYTKNLIASSDYD-G----IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVG------ 447 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~------ 447 (597)
..+..++|+| +++.|+.+..+ | .|++||+.+++.+.....+ ..+.+++|+| ++..|+.++.++.-+
T Consensus 125 ~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCccccccccc
Confidence 4688999999 67777765443 3 8999999998876543222 2367899999 777766666543200
Q ss_pred ---CCCCeEEEEEccCCCcc-eeeec--cCCCceEEEEecCC-CeEEEeeC-----CCcEEEEEcCC------Cc-ceee
Q 042883 448 ---SADHHIHYYDLRNISQP-LHVFN--GHKKAVSYVKFLSN-NELASAST-----DSSLRLWDVKE------NL-PLHT 508 (597)
Q Consensus 448 ---~~d~~i~i~d~~~~~~~-~~~~~--~~~~~v~~v~~~~~-~~l~s~~~-----d~~v~iwd~~~------~~-~~~~ 508 (597)
.....|++|++.++... ...+. .|...+..+.|+|+ .+|+.++. +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 12345999999863211 22223 24556789999999 56666553 56899999986 43 4566
Q ss_pred eeCCCCceeEEEEeecCCEEEEEeCC----CcEEEEEccCCccc--cccccCCCCCCCcCcCCCcceEEEEEccCCCeEE
Q 042883 509 FRGHTNEKNFVGLTVNNEYIACGSET----NEVFVYHKAISKPA--ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 509 ~~~~~~~v~~v~~s~~g~~l~~~~~d----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
+..+...+.. .|+++|..|+..+.. +.|.+||+.++... ..+... .....+.+++|++++.+++
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE---------HEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---------CSSCEEEEEEEETTTEEEE
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC---------CCCCeEEEEEEEcCCEEEE
Confidence 6666665554 588999887766543 36999998876431 122110 0023688899998888888
Q ss_pred EecCcccEEEEE
Q 042883 583 TANRKGAIKVLV 594 (597)
Q Consensus 583 s~~~dg~v~iwd 594 (597)
+...|+..+||-
T Consensus 352 ~~~~~g~~~l~~ 363 (710)
T 2xdw_A 352 CYLHDVKNTLQL 363 (710)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEEE
Confidence 888888655543
No 251
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=1.9e-12 Score=125.83 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=131.0
Q ss_pred ceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe---------e-eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCC
Q 042883 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ---------S-VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSA 449 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~ 449 (597)
.++.+++++ ...++++|+.+ .+.+|++.+.. . ......+.. |+.++| ++.+++++ .
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~------- 104 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-T------- 104 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-E-------
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-c-------
Confidence 688899998 68888888877 56669865332 1 112224566 999999 56777776 3
Q ss_pred CCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEE
Q 042883 450 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIA 529 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 529 (597)
++.|++||+++ .........|...+.++.+.+.+ +++++.||.|.+||+.++.... +...|++++|||+| ++
T Consensus 105 ~~~l~v~dv~s-l~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 105 RNALYSLDLEE-LSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LA 176 (388)
T ss_dssp SSEEEEEESSS-TTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EE
T ss_pred CCcEEEEEchh-hhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eE
Confidence 34599999987 33455566677788888876654 8889999999999999876543 34579999999999 67
Q ss_pred EEeCCCcEEEEEccCCcc--ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 530 CGSETNEVFVYHKAISKP--AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 530 ~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
.|..||.+++|+...+.. ...+..+... ....+|...|.+|.|.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~--~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSEL--EELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHH--HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCccc--ccccCCCeeEEEEEEecCCeEEEE
Confidence 788999999998877664 4444322111 000125788999999999998887
No 252
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.42 E-value=1.8e-10 Score=109.91 Aligned_cols=235 Identities=5% Similarity=-0.064 Sum_probs=157.6
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...+.+++++++|.++++...++.|..||.. +... ..........+.++++.+ ++.++++...++.|..||.
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~ 132 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT------EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTA 132 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE------EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE------EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECC
Confidence 4678999999999877777667889999877 3110 011111235688999998 6777777766789999998
Q ss_pred CCCeeee-EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCCCeE
Q 042883 409 TTSQSVM-EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSNNEL 486 (597)
Q Consensus 409 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~~~l 486 (597)
. +.... .+......+.++++.+ ++.++++... ++.|..||.. +..... ...+...+..+++++++.+
T Consensus 133 ~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-------~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g~l 201 (300)
T 2qc5_A 133 D-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ-------NNSIGRITNT--GKLEEYPLPTNAAAPVGITSGNDGAL 201 (300)
T ss_dssp T-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-------TTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred C-CCEEEccCCCCCCCceeEEECC-CCCEEEEecC-------CCeEEEECCC--CcEEEeeCCCCCCCcceEEECCCCCE
Confidence 7 54432 2222345789999998 6677666553 3448899883 333322 2234456889999998555
Q ss_pred EEee-CCCcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcC
Q 042883 487 ASAS-TDSSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDM 564 (597)
Q Consensus 487 ~s~~-~d~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 564 (597)
..+. ..+.|.+||. +++.... +......+.+++++++|.++++...++.|..||. ++... .+... .
T Consensus 202 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~---------~ 269 (300)
T 2qc5_A 202 WFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ---------T 269 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC---------S
T ss_pred EEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC---------c
Confidence 5554 5667999998 4543332 2334556789999999997777666789999998 44332 22211 1
Q ss_pred CCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 565 GSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 565 h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
+...+.+++++++|.++++.. + .|..+|.+
T Consensus 270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred cCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 134588999999998777665 4 67777754
No 253
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=5.1e-14 Score=100.42 Aligned_cols=48 Identities=31% Similarity=0.801 Sum_probs=43.9
Q ss_pred CCCccccccccccccc-ccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 36 DRDTLCPICKQLMTDA-FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P-~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
+++..|+||++.|.+| +.++|||.||..||.+|+.....||.||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3567899999999997 78999999999999999988888999999886
No 254
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=100.68 Aligned_cols=53 Identities=23% Similarity=0.539 Sum_probs=46.5
Q ss_pred CcCCCCCcccccccccccccccc---cccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMT---ACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l---~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
...+.++..|+||++.|.+|..+ +|||.||+.||.+|+.....||+||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 44667789999999999988655 999999999999999988889999998864
No 255
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.41 E-value=2.1e-11 Score=117.84 Aligned_cols=232 Identities=11% Similarity=0.082 Sum_probs=152.6
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecccCccCCccCCCCceE--ecC------CCceeEEEEecCCCCEEE
Q 042883 334 SIEFDRDDELFASAG----------VSRRIKIFEFSSVVNEPRDVHYPMVE--MPT------RSKLSCLSWNKYTKNLIA 395 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~--~~~------~~~i~~v~~~~~~~~~l~ 395 (597)
.++++|||++++++. .++.|.+||..+. ..... .+. ......++|+| ++++++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~ly 152 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLL 152 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------eEEEEEECCCccccccCCCCceEEEcC-CCCEEE
Confidence 399999999888775 3678999999876 11111 111 22466799999 677777
Q ss_pred EeeC--CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC--
Q 042883 396 SSDY--DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH-- 471 (597)
Q Consensus 396 s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~-- 471 (597)
++.. ++.|.++|+.+++.+.++.... . ...+ |.+...+++.+.||. +.+.++...++.......+
T Consensus 153 Van~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~~~~~~~~DG~-------~~~v~~~~~g~v~~~~~~~~~ 221 (386)
T 3sjl_D 153 FYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPDTFFMHCRDGS-------LAKVAFGTEGTPEITHTEVFH 221 (386)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETTEEEEEETTSC-------EEEEECCSSSCCEEEECCCCS
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCceeEEECCCCC-------EEEEECCCCCeEEEeecceec
Confidence 7653 6899999999999988885321 1 1122 334555555554444 7777776533332211111
Q ss_pred --CCceE-EEEec-CCCeEEEeeCCCcEEEEEcCCCc--ceeeee---------C-CCCceeEEEEeecCCEEEEEeC--
Q 042883 472 --KKAVS-YVKFL-SNNELASASTDSSLRLWDVKENL--PLHTFR---------G-HTNEKNFVGLTVNNEYIACGSE-- 533 (597)
Q Consensus 472 --~~~v~-~v~~~-~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~---------~-~~~~v~~v~~s~~g~~l~~~~~-- 533 (597)
...+. ...|. +++.++..+.+|.|+++|+.++. .+..+. + .......++++++++.+++...
T Consensus 222 ~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 222 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 11221 23554 56776667778999999997654 233222 0 1123345788999887776532
Q ss_pred --------CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEE-ecCcccEEEEEecC
Q 042883 534 --------TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLT-ANRKGAIKVLVLAA 597 (597)
Q Consensus 534 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s-~~~dg~v~iwd~~~ 597 (597)
.+.|.++|+.+++.+..+.. ...++++++++|++ +|++ ...++.|.|+|..+
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v------------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEM------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEE------------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEEC------------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 25799999999999998886 34689999999996 6666 45689999999753
No 256
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=7.1e-14 Score=94.89 Aligned_cols=47 Identities=30% Similarity=0.645 Sum_probs=42.6
Q ss_pred CCcccccccccccc----cccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 37 RDTLCPICKQLMTD----AFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 37 ~~l~C~IC~~~f~~----P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
++..|+||++.|.+ |+.++|||.||..||.+|+.....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999999977 789999999999999999998888999998764
No 257
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.40 E-value=1.8e-10 Score=111.41 Aligned_cols=224 Identities=9% Similarity=-0.029 Sum_probs=144.1
Q ss_pred cEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 331 IISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 331 ~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
...+..|+|++ .+++++..++.|.+|+..++. . ........+.+++|++ +++++++. . ..|.+||..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--------~-~~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~ 117 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR--------K-TVHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTA 117 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--------E-EEEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--------E-EEEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECC
Confidence 35678899974 556666678899999987651 1 1122345789999998 56666654 3 459999988
Q ss_pred CCeeeeEEee----ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCC-
Q 042883 410 TSQSVMEYEE----HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNN- 484 (597)
Q Consensus 410 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~- 484 (597)
+++....... ....+++++++| ++.++++...+.. ....+.|+.+| . +... .+..+......++|+|++
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~-~~~~~~l~~~~--~-g~~~-~~~~~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKA-ETGAGSIYHVA--K-GKVT-KLFADISIPNSICFSPDGT 191 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTC-CTTCEEEEEEE--T-TEEE-EEEEEESSEEEEEECTTSC
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcC-CCCceEEEEEe--C-CcEE-EeeCCCcccCCeEEcCCCC
Confidence 7765432221 124689999999 6666665432110 00123466666 3 4332 222233456789999994
Q ss_pred eE-EEeeCCCcEEEEEcC--CC-cc-----eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 485 EL-ASASTDSSLRLWDVK--EN-LP-----LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 485 ~l-~s~~~d~~v~iwd~~--~~-~~-----~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
.+ ++.+.++.|.+||+. ++ .. +..+......+..++++++|.++++...++.|.+||. +++.+..+..+
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~- 269 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP- 269 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS-
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC-
Confidence 45 444567899999986 55 32 2222223455678999999988777766788999998 56655555432
Q ss_pred CCCCCcCcCCCcceEEEEEc-cCCCeEEEe
Q 042883 556 DADHVDDDMGSYFISAVCWK-SDSPTMLTA 584 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~-~~~~~l~s~ 584 (597)
...+++++|+ +++..|+.+
T Consensus 270 ----------~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 270 ----------GKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp ----------CSBEEEEEEESTTSCEEEEE
T ss_pred ----------CCCcEEEEEecCCCCEEEEE
Confidence 4569999998 888766544
No 258
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.38 E-value=8.6e-14 Score=94.84 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=49.4
Q ss_pred Ccccccccccccccccc-cccccccHHHHHHhhcCCCCCCCCCCCCccccccchH
Q 042883 38 DTLCPICKQLMTDAFMT-ACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNL 91 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l-~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~ 91 (597)
.+.||||++.+.|||++ +|||+||+.||++|+.....||++++.+...+|.+|.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 47899999999999999 8999999999999998877899999999999988763
No 259
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=1.3e-10 Score=111.35 Aligned_cols=233 Identities=11% Similarity=0.002 Sum_probs=149.9
Q ss_pred CCCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
.........|+|+|+ +++++..++.|..|+.... ..........+.++++++ +++++++...++.|.+|
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---------~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT---------VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC---------EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC---------EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 445677899999998 6677777899999987422 112223456788999999 67766665556789999
Q ss_pred eCCCCeeeeEEeec----cceeEEEEeCCCCCceEEeecCCCcc----------cCCCCeEEEEEccCCCcceeeeccCC
Q 042883 407 DVTTSQSVMEYEEH----EKRAWSVDFSCTEPSMLVSGSDDCKV----------GSADHHIHYYDLRNISQPLHVFNGHK 472 (597)
Q Consensus 407 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~~----------~~~d~~i~i~d~~~~~~~~~~~~~~~ 472 (597)
+.. +......... ...++++++.| ++.++++-...+.. ....+.|+.||..+ +...... ..
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~~~~~~--~~ 187 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SPLQRMA--DL 187 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CCCEEEE--EE
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-CcEEEEe--cC
Confidence 975 5433222111 13467899999 77888762111110 00124578888764 3333222 33
Q ss_pred CceEEEEecCC-CeEEEeeCC------CcEEEEEcCCCccee---ee-eCCCCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 473 KAVSYVKFLSN-NELASASTD------SSLRLWDVKENLPLH---TF-RGHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 473 ~~v~~v~~~~~-~~l~s~~~d------~~v~iwd~~~~~~~~---~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
.....++|+|+ ..|+++... +.|.+||+..+. +. .+ ....+.+..++++++|++.+ ++.+ .|.+|+
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~ 264 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFD 264 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEEC
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEEC
Confidence 45688999999 556666554 689999987543 21 11 11233456789999999544 4444 499999
Q ss_pred ccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEE
Q 042883 542 KAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIK 591 (597)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~ 591 (597)
. .++.+..+..+ ..+.+++|+++++.|+.++.++..+
T Consensus 265 ~-~g~~~~~~~~~------------~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 265 S-DGQLLGHIPTP------------GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp T-TSCEEEEEECS------------SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred C-CCCEEEEEECC------------CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 7 56666555432 2488899999998888877765433
No 260
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.37 E-value=5.8e-14 Score=101.16 Aligned_cols=49 Identities=27% Similarity=0.621 Sum_probs=43.6
Q ss_pred CcCCCCCccccccccccccccccccccc-ccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHS-FCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
...+++++.|+||++.+.+|+.+||||+ ||+.|+.+| ..||+||+.+..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3466778999999999999999999999 999999887 679999998863
No 261
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=4e-11 Score=128.89 Aligned_cols=203 Identities=11% Similarity=0.010 Sum_probs=131.5
Q ss_pred CCCceeEEEEecCCCCEEE-----EeeCCCcEEEEeCCCCeee-eEEeecccee--EEEEeCCCCCceEEeecCCCcc--
Q 042883 377 TRSKLSCLSWNKYTKNLIA-----SSDYDGIVTIWDVTTSQSV-MEYEEHEKRA--WSVDFSCTEPSMLVSGSDDCKV-- 446 (597)
Q Consensus 377 ~~~~i~~v~~~~~~~~~l~-----s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v--~~~~~~~~~~~~l~s~~~d~~~-- 446 (597)
|...+.+++|+| +++.|+ .|+.+..|++||+.+++.+ .. +...+ .+++|+| ++..|+.++.|..-
T Consensus 119 ~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 119 GTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---VIEGGKYATPKWTP-DSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---CBSCCTTCCCEECT-TSSEEEEEECCCCTTS
T ss_pred CCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---ccCcccccceEEec-CCCEEEEEEecCCCCC
Confidence 344688999999 677777 3444568999999998765 21 11222 6899999 77777776654320
Q ss_pred ----cCCCCeEEEEEccCCCc---ceeeeccCCCceEEEEecCC-CeEEEeeCCC----cEEEEEcCCCcceeeeeCCCC
Q 042883 447 ----GSADHHIHYYDLRNISQ---PLHVFNGHKKAVSYVKFLSN-NELASASTDS----SLRLWDVKENLPLHTFRGHTN 514 (597)
Q Consensus 447 ----~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~~~ 514 (597)
......|++|++.++.. .+.....+...+.++.|+|+ .+|+.++.++ .|.+||..++. ...+..+..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~ 272 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG 272 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC
Confidence 01234599999987321 22222335567889999999 5676666555 67777765554 444554555
Q ss_pred ceeEEEEeecCCEEEEEe---CCCcEEEEEccCCccc--cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCccc
Q 042883 515 EKNFVGLTVNNEYIACGS---ETNEVFVYHKAISKPA--ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGA 589 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~---~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~ 589 (597)
.+....+ ++|.+++.+. .++.|.+||+.++... ..+... .+...|.+++|+ ++.++++...|+.
T Consensus 273 ~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~---------~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 273 AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE---------DSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC---------CSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC---------CCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 5566666 6666444443 2578999999876531 111110 114568889998 6778888899999
Q ss_pred EEEEEec
Q 042883 590 IKVLVLA 596 (597)
Q Consensus 590 v~iwd~~ 596 (597)
.+||.++
T Consensus 342 ~~l~~~~ 348 (695)
T 2bkl_A 342 SEVRVAT 348 (695)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9998764
No 262
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.2e-14 Score=101.18 Aligned_cols=49 Identities=27% Similarity=0.621 Sum_probs=42.6
Q ss_pred CcCCCCCccccccccccccccccccccc-ccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHS-FCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
...++++++|+||++.+.+|+.+||||. ||..|+.+. ..||+||+.+..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 3456678899999999999999999999 999999753 569999998864
No 263
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.36 E-value=1.9e-13 Score=112.95 Aligned_cols=54 Identities=33% Similarity=0.818 Sum_probs=49.4
Q ss_pred CCCccccccccccccc-------ccccccccccHHHHHHhhcCCCCCCCCCCCCccccccc
Q 042883 36 DRDTLCPICKQLMTDA-------FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFP 89 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P-------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~ 89 (597)
.++++|+||++.|.+| ++++|||+||+.||.+|+.....||+||+.+...++.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 4679999999999999 99999999999999999998889999999998776554
No 264
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.36 E-value=3.5e-11 Score=117.29 Aligned_cols=242 Identities=10% Similarity=-0.029 Sum_probs=151.6
Q ss_pred CcEEEEEEcCCCCEEEEeeC--CCcEEEEecccCccCCccCCC-CceEecCCCceeEEEEecCCCCEEEEeeC-----CC
Q 042883 330 NIISSIEFDRDDELFASAGV--SRRIKIFEFSSVVNEPRDVHY-PMVEMPTRSKLSCLSWNKYTKNLIASSDY-----DG 401 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~--d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-----dg 401 (597)
..+..++++++|+++++... ++.+.||.+..+. ...... ......+...+.++++++ +++++++... ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCC
Confidence 57899999999998888642 3436666665331 110000 001113456799999998 5666665543 57
Q ss_pred cEEEEeCCCCeeeeEEeec------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC----
Q 042883 402 IVTIWDVTTSQSVMEYEEH------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH---- 471 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~---- 471 (597)
.|.+||+.+++.+..+... ...+.++++++.++.++++....+ .++.|.+||+.+ +.....+.+|
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~----~~~~i~v~d~~~-g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD----DKAALIRVDLQT-GLAARVLQGYPGIA 168 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG----GGCEEEEEETTT-CCEEEECTTCTTTS
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC----CCCeEEEEECCC-CCEEEEecCCCccc
Confidence 8999999988877666432 235689999974556666644110 245599999875 4433333221
Q ss_pred -------------------------CCceEEEEecCC-CeEEEeeCCC-cEEEEEcC---CCc-----cee--eeeCCCC
Q 042883 472 -------------------------KKAVSYVKFLSN-NELASASTDS-SLRLWDVK---ENL-----PLH--TFRGHTN 514 (597)
Q Consensus 472 -------------------------~~~v~~v~~~~~-~~l~s~~~d~-~v~iwd~~---~~~-----~~~--~~~~~~~ 514 (597)
...+..++|+|+ ..|+++..++ .+..+|.. .+. ... ...++..
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP 248 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence 123688999999 5677776665 45444432 111 011 1123344
Q ss_pred ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCccc
Q 042883 515 EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGA 589 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~ 589 (597)
....++++++|.++++...++.|.+||..+++........ +...+.+++|+++|.++++.+..+.
T Consensus 249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~----------~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE----------KLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG----------GGSCEEEEEECTTSCEEEEECCGGG
T ss_pred CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC----------ceecCCeeEECCCCcEEEEeCcccc
Confidence 5678999999999999888999999998555432222110 1346899999999988888765443
No 265
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=8.5e-11 Score=115.85 Aligned_cols=231 Identities=10% Similarity=0.097 Sum_probs=150.7
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecccCccCCccCCCCceE--ec------CCCceeEEEEecCCCCEEE
Q 042883 334 SIEFDRDDELFASAG----------VSRRIKIFEFSSVVNEPRDVHYPMVE--MP------TRSKLSCLSWNKYTKNLIA 395 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~--~~------~~~~i~~v~~~~~~~~~l~ 395 (597)
.++++|||++++++. .++.|.++|..+. ..... .+ .......++|+| ++++++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--------~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~ly 192 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--------LPIADIELPDAPRFLVGTYQWMNALTP-DNKNLL 192 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--------cEEEEEECCCccccccCCCcceEEEcC-CCCEEE
Confidence 799999999888876 3678999999876 11111 11 013456789999 677777
Q ss_pred EeeC--CCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee----ec
Q 042883 396 SSDY--DGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV----FN 469 (597)
Q Consensus 396 s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~----~~ 469 (597)
++.. ++.|.++|+.+++.+..+.-.. . ....|.+...+++.+.|| .+.+.+... ++.... +.
T Consensus 193 V~n~~~~~~VsVID~~t~kvv~~I~v~g-~---~~~~p~g~~~~v~~~~dG-------~~~~V~~~~-~~v~~~~~~~~~ 260 (426)
T 3c75_H 193 FYQFSPAPAVGVVDLEGKTFDRMLDVPD-C---YHIFPASPTVFYMNCRDG-------SLARVDFAD-GETKVTNTEVFH 260 (426)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEECCS-E---EEEEEEETTEEEEEETTS-------SEEEEECCT-TCCEEEECCCCS
T ss_pred EEecCCCCeEEEEECCCCeEEEEEEcCC-c---eeeccCCCcEEEEEcCCC-------CEEEEECCC-CcEEEEeeeeec
Confidence 7763 5789999999999888875321 1 223332334555555433 366667633 333311 11
Q ss_pred cCCCce-EEEEecCC-CeEEEeeCCCcEEEEEcCCCcce--eeeeC----------CCCceeEEEEeecCCEEEEEeC--
Q 042883 470 GHKKAV-SYVKFLSN-NELASASTDSSLRLWDVKENLPL--HTFRG----------HTNEKNFVGLTVNNEYIACGSE-- 533 (597)
Q Consensus 470 ~~~~~v-~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~--~~~~~----------~~~~v~~v~~s~~g~~l~~~~~-- 533 (597)
....++ ..+.+.++ +.++..+..+.|.+.|....... ..+.. .......++++|+|..+++...
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 111111 23456777 66666677889999998654321 11110 0112224789999887666532
Q ss_pred --------CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCC-eEEEec-CcccEEEEEecC
Q 042883 534 --------TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSP-TMLTAN-RKGAIKVLVLAA 597 (597)
Q Consensus 534 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~~-~dg~v~iwd~~~ 597 (597)
++.|.++|..+.+.+..+.. ....++++|+|+|+ ++++.. .++.|.|+|+.+
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~v------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIEL------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEE------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEEC------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 35799999999999998876 33589999999999 788777 599999999764
No 266
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.29 E-value=2.4e-10 Score=123.66 Aligned_cols=202 Identities=11% Similarity=0.009 Sum_probs=129.8
Q ss_pred CceeEEEEecCCCCEEEEeeCC-C----cEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcc-------
Q 042883 379 SKLSCLSWNKYTKNLIASSDYD-G----IVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKV------- 446 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~------- 446 (597)
..+..++|+| +++.|+.+..+ | .|++||+.+++.+... .+...+..++|+| + ..|+.++.+...
T Consensus 163 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred EEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 4688999999 67777766443 3 5999999998875432 2223346899999 5 666555544320
Q ss_pred cCCCCeEEEEEccCCCc-ceeeecc--CCCceEEEEecCC-CeEEEeeCC-----CcEEEEEcCCC--cceeeeeCCCCc
Q 042883 447 GSADHHIHYYDLRNISQ-PLHVFNG--HKKAVSYVKFLSN-NELASASTD-----SSLRLWDVKEN--LPLHTFRGHTNE 515 (597)
Q Consensus 447 ~~~d~~i~i~d~~~~~~-~~~~~~~--~~~~v~~v~~~~~-~~l~s~~~d-----~~v~iwd~~~~--~~~~~~~~~~~~ 515 (597)
......|++|++.++.. ....+.. +...+.++.|+|+ .+|+..+.+ ..|++||+.++ .....+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 01144689999876321 1223332 3345889999999 466665544 37999999876 424555555554
Q ss_pred eeEEEEeecCCEEEEEeC----CCcEEEEEccCCc-cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccE
Q 042883 516 KNFVGLTVNNEYIACGSE----TNEVFVYHKAISK-PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAI 590 (597)
Q Consensus 516 v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v 590 (597)
+... ++|+|..|+..+. ++.|.+||+.++. ....+.. ++...+.+++|+ ++.++++...|+..
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~----------~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP----------ESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC----------CCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec----------CCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 5444 4589998877765 3459999987752 2122211 124457788887 56677888889988
Q ss_pred EEEEec
Q 042883 591 KVLVLA 596 (597)
Q Consensus 591 ~iwd~~ 596 (597)
+||.++
T Consensus 387 ~l~~~~ 392 (741)
T 1yr2_A 387 QVLAFD 392 (741)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888664
No 267
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.29 E-value=1.4e-12 Score=103.80 Aligned_cols=49 Identities=27% Similarity=0.595 Sum_probs=41.6
Q ss_pred CCcccccccccccccc------------------cccccccccHHHHHHhhc-----CCCCCCCCCCCCccc
Q 042883 37 RDTLCPICKQLMTDAF------------------MTACGHSFCYTCIFTHLR-----NKSDCPCCGCHLTCK 85 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~------------------~l~CgH~FC~~Cl~~~~~-----~~~~CP~Cr~~~~~~ 85 (597)
.+..|+||++.|.+|. .++|||.||..||..|+. ....||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3569999999998875 789999999999999993 455699999988643
No 268
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=1.3e-12 Score=99.55 Aligned_cols=66 Identities=20% Similarity=0.415 Sum_probs=48.5
Q ss_pred CCcccccccccccccccc---cccccccHHHHHHhhcC-----C---CCCCC--CCCC--CccccccchHHHHHHHHHHH
Q 042883 37 RDTLCPICKQLMTDAFMT---ACGHSFCYTCIFTHLRN-----K---SDCPC--CGCH--LTCKHIFPNLLLNKLLKKTS 101 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~l---~CgH~FC~~Cl~~~~~~-----~---~~CP~--Cr~~--~~~~~l~~n~~~~~~~~~~~ 101 (597)
+.++|+||++.|.+|+++ +|||.||+.|+.+||.. . ..||. |+.. +....+ .++....+.++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 478999999999999775 69999999999999973 1 24999 9998 443332 2333345666655
Q ss_pred Hh
Q 042883 102 AR 103 (597)
Q Consensus 102 ~~ 103 (597)
..
T Consensus 83 ~~ 84 (94)
T 1wim_A 83 KL 84 (94)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 269
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=95.43 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=43.1
Q ss_pred CCcccccccccccc--------------ccccc-ccccccHHHHHHhhcCCCCCCCCCCCCcccc
Q 042883 37 RDTLCPICKQLMTD--------------AFMTA-CGHSFCYTCIFTHLRNKSDCPCCGCHLTCKH 86 (597)
Q Consensus 37 ~~l~C~IC~~~f~~--------------P~~l~-CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 86 (597)
++.+|+||++.|.+ ++.++ |||.|+..||.+|+.....||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 46789999999987 45665 9999999999999998889999999886543
No 270
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.25 E-value=2.3e-12 Score=89.47 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=43.1
Q ss_pred CCcccccccccccccccc--ccccc-ccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 37 RDTLCPICKQLMTDAFMT--ACGHS-FCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~l--~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
++..|+||++.+.+++.+ ||||. ||..|+.+++.....||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 467899999999999987 99999 899999999988888999999875
No 271
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1e-09 Score=109.34 Aligned_cols=204 Identities=9% Similarity=0.028 Sum_probs=135.0
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEc
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDL 458 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~ 458 (597)
..+..|+|++ +++++++...++.|++||..++........ ..... ++|+| ++..++++..++. ..|.+||.
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~-----~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGT-----HTVYVYMK 201 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTT-----CEEEEEEG
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCC-----ceEEEEEc
Confidence 4678999998 677777777789999999987766555443 33344 99999 6666666654331 15899998
Q ss_pred cCCCcceeee----ccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceee----eeCCCCce-e-EEEEeec-CC
Q 042883 459 RNISQPLHVF----NGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHT----FRGHTNEK-N-FVGLTVN-NE 526 (597)
Q Consensus 459 ~~~~~~~~~~----~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~~~v-~-~v~~s~~-g~ 526 (597)
.. ......+ ......+.+++++|+ +.|+++..++.|+.||..++..... ..+..... . .++|+|+ +.
T Consensus 202 ~~-~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 202 AS-GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp GG-TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred CC-CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 76 3333333 214466788999994 8877777888999999987653222 22222222 3 9999995 66
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccCCC--CCCCc---CcCCCcceEEEEEccCCCeEEEec-CcccEEEEEe
Q 042883 527 YIACGSETNEVFVYHKAISKPAASHRFGSD--ADHVD---DDMGSYFISAVCWKSDSPTMLTAN-RKGAIKVLVL 595 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~---~~~h~~~i~~v~~~~~~~~l~s~~-~dg~v~iwd~ 595 (597)
++++...++.|+.|+.... +..+. +.. ..... ....-....+++|+|+|.++++.. .++.|+.|++
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence 6666677889999987543 11111 110 00000 000124588999999999888888 8999999984
No 272
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.23 E-value=6.5e-13 Score=96.50 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=42.8
Q ss_pred cCCCCCccccccccccccccccccccc-ccHHHHHHhhcCCCCCCCCCCCCccc
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACGHS-FCYTCIFTHLRNKSDCPCCGCHLTCK 85 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~~~ 85 (597)
+.++++..|+||++.+.+|+.+||||. ||..|+.+++ .||.||..+...
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEE
T ss_pred HcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCe
Confidence 345667899999999999999999999 9999998764 799999998753
No 273
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.23 E-value=2.9e-12 Score=88.61 Aligned_cols=47 Identities=21% Similarity=0.555 Sum_probs=42.7
Q ss_pred CCcccccccccccccccc--ccccc-ccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 37 RDTLCPICKQLMTDAFMT--ACGHS-FCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~l--~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
.+..|+||++.+.+++.+ ||||. ||..|+.+++.....||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 356799999999999988 99998 999999999988778999999875
No 274
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.23 E-value=1.9e-09 Score=103.60 Aligned_cols=202 Identities=13% Similarity=0.148 Sum_probs=131.8
Q ss_pred CCCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC------
Q 042883 328 AANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD------ 400 (597)
Q Consensus 328 ~~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d------ 400 (597)
+...+.+++++++ |.++++.. .+.|.+|+.. +.......... .......+.++++++ +++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~ 143 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDS--EGRRMQGCNDCAFDY-EGNLWITAPAGEVAPAD 143 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCT--TSCBCBCCCEEEECT-TSCEEEEECBCBCTTSC
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccC--CCccccCCcCEEECC-CCCEEEEecCccccccc
Confidence 4467899999999 66555443 4478889987 41110000000 001124578999999 67777776554
Q ss_pred ---------CcEEEEeCCCCeeeeEEeeccceeEEEEeC----CCCCc-eEEeecCCCcccCCCCeEEEEEccCCCc---
Q 042883 401 ---------GIVTIWDVTTSQSVMEYEEHEKRAWSVDFS----CTEPS-MLVSGSDDCKVGSADHHIHYYDLRNISQ--- 463 (597)
Q Consensus 401 ---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~~~--- 463 (597)
+.|..||.. ++..... .+...+..++|+ | ++. ++++... ++.|.+||+...+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~-dg~~l~v~~~~-------~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 144 YTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDG-RPYQLIVAETP-------TKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp CCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTS-CEEEEEEEETT-------TTEEEEEEEEETTEEEE
T ss_pred ccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCC-CCCEEEEEECC-------CCeEEEEECCCCCcccc
Confidence 567788765 5443332 334456889999 8 664 4555443 34599999863132
Q ss_pred --ceeeeccCC-CceEEEEecCCCe-EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEE-EEeCCCcEE
Q 042883 464 --PLHVFNGHK-KAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIA-CGSETNEVF 538 (597)
Q Consensus 464 --~~~~~~~~~-~~v~~v~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~i~ 538 (597)
....+..+. ..+..+++++++. +++...++.|.+||..+++.+..+..+...+.+++|+++|+.|+ +...++.|.
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEE
Confidence 222333343 5688999999954 55555788999999987877777776667889999999999554 445568899
Q ss_pred EEEccC
Q 042883 539 VYHKAI 544 (597)
Q Consensus 539 iwd~~~ 544 (597)
.|++..
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 999864
No 275
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.20 E-value=6.8e-12 Score=118.51 Aligned_cols=53 Identities=26% Similarity=0.686 Sum_probs=46.3
Q ss_pred CCCCCcccccccccccccccccccccccHHHHHHhhc-CCCCCCCCCCCCcccc
Q 042883 34 EVDRDTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR-NKSDCPCCGCHLTCKH 86 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~-~~~~CP~Cr~~~~~~~ 86 (597)
..+....|+||++.+.+|+.+||||.||..|+..|.. ....||.||+.+....
T Consensus 328 ~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 328 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred hcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3444589999999999999999999999999999998 5677999999987654
No 276
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=86.37 Aligned_cols=46 Identities=20% Similarity=0.577 Sum_probs=40.2
Q ss_pred CCCCccccccccccccccccccccc-ccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 35 VDRDTLCPICKQLMTDAFMTACGHS-FCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 35 ~~~~l~C~IC~~~f~~P~~l~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
..++..|+||++.+.+++.+||||. ||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3446889999999999999999999 99999985 3579999998864
No 277
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=4.3e-12 Score=104.66 Aligned_cols=55 Identities=33% Similarity=0.786 Sum_probs=50.1
Q ss_pred CCCccccccccccccc-------ccccccccccHHHHHHhhcCCCCCCCCCCCCccccccch
Q 042883 36 DRDTLCPICKQLMTDA-------FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P-------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n 90 (597)
.+++.|+||++.|.+| +.++|||.||..||.+|+.....||+||..+...++.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 5578899999999998 889999999999999999988899999999998887664
No 278
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.14 E-value=9.6e-10 Score=106.60 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=140.9
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecccCccCCccCCCCceEe--c-C-----CCceeEEEEecCCCCEEE
Q 042883 334 SIEFDRDDELFASAG----------VSRRIKIFEFSSVVNEPRDVHYPMVEM--P-T-----RSKLSCLSWNKYTKNLIA 395 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~--~-~-----~~~i~~v~~~~~~~~~l~ 395 (597)
.+.|+||+++++++. .++.|.+||+.+. ...... + . ......++++| ++++++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~ly 139 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFSVGPRVHIIGNCA-SSACLL 139 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------CEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------CEEEEEECCCccccccCCCcceEEEcC-CCCEEE
Confidence 799999999998886 3688999999887 222221 1 0 12456799999 677777
Q ss_pred EeeC--CCcEEE--EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC----CCccee-
Q 042883 396 SSDY--DGIVTI--WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN----ISQPLH- 466 (597)
Q Consensus 396 s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~----~~~~~~- 466 (597)
++.. +..|.+ +|+.+ +..+.. .+. +.+.|.+...+++.+.|+ .+.+.|+.. .++...
T Consensus 140 Van~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg-------~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 140 FFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPA-------SLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp EEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTT-------SCEEEECCSSCCCCEECCCC
T ss_pred EEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCC-------CEEEEECccccccCCeEEEE
Confidence 7654 457888 88866 444421 111 123343445555555444 467777764 122211
Q ss_pred ---eeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCc--ceeeeeCC----------CCceeEEEEeecCCEEEE
Q 042883 467 ---VFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENL--PLHTFRGH----------TNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 467 ---~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~----------~~~v~~v~~s~~g~~l~~ 530 (597)
.+.....+. . .++ +.++..+. +.|.+.|..+.. .+..+... ......++|+|+|+.+++
T Consensus 206 ~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 206 CTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp SCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred eeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 111112233 3 444 66666666 999999986532 22222110 011122789999988776
Q ss_pred EeC---------CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe-EEEec-CcccEEEEEecC
Q 042883 531 GSE---------TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT-MLTAN-RKGAIKVLVLAA 597 (597)
Q Consensus 531 ~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-l~s~~-~dg~v~iwd~~~ 597 (597)
+.. ++.+.+||+.+++.+..+..+ ....+++|+|+|++ +++.. .++.|.|+|+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECC------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 533 235679999999998888763 36899999999985 56666 599999999864
No 279
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.13 E-value=2e-11 Score=93.68 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=42.2
Q ss_pred CCccccccccccccc------------------ccccccccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 37 RDTLCPICKQLMTDA------------------FMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P------------------~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
++-+|+||++.|.+| +.++|||.|+..||.+|+.....||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 467899999999987 347899999999999999998889999998754
No 280
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.12 E-value=4.7e-08 Score=95.77 Aligned_cols=237 Identities=8% Similarity=-0.075 Sum_probs=142.7
Q ss_pred EcCCCCEEEEeeC--CC---cEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee----------CCC
Q 042883 337 FDRDDELFASAGV--SR---RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD----------YDG 401 (597)
Q Consensus 337 ~~~~~~~l~t~~~--d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~----------~dg 401 (597)
..|++.++++... .+ .|.+||..++ ............ .++++| +++.++++. .++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p-~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP-NPVAAH-SGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC-CeEECC-CCCEEEEEeccccccccCCCCC
Confidence 4467777766653 22 7899998876 112222222233 899999 677777764 367
Q ss_pred cEEEEeCCCCeeeeEEeec-------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCC
Q 042883 402 IVTIWDVTTSQSVMEYEEH-------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKK 473 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~ 473 (597)
.|.+||..+.+.+..+.-. ......++|+| +++++++++.. .++.|.++| .+ ++.+.. +... .
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~-----~~~~v~viD-~t-~~~~~~~i~~~-~ 168 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFA-----AGPAVGLVV-QG-GSSDDQLLSSP-T 168 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecC-----CCCeEEEEE-CC-CCEEeEEcCCC-c
Confidence 8999999988877766422 13456899999 77777666531 134599999 76 666666 5422 2
Q ss_pred ceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeee-----CCCCce-eEEEEeecCCEEEEEeCCCcEEEEEccCC
Q 042883 474 AVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFR-----GHTNEK-NFVGLTVNNEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 474 ~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v-~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 545 (597)
. +.+.|+ ..+++.+.||.+.+||. +++.+.... ....++ ....+.+++..++..+.++.+.++|+..+
T Consensus 169 ~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 169 C---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred e---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 2 334454 45777888999999999 777663322 111121 23456777655444457789999998765
Q ss_pred ccc--cccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC----------cccEEEEEecC
Q 042883 546 KPA--ASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR----------KGAIKVLVLAA 597 (597)
Q Consensus 546 ~~~--~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~----------dg~v~iwd~~~ 597 (597)
... ..+.......... .........++++|+++.++.+.. ++.|.++|+.+
T Consensus 245 ~~~v~~~~~~~~~~~~~~-~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t 307 (373)
T 2mad_H 245 GATNKAPIDALSGGRKAD-TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred cceEeeeeeecCCccccc-ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence 322 2221110000000 001223445789999988777543 35788888753
No 281
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.12 E-value=1e-08 Score=97.62 Aligned_cols=189 Identities=8% Similarity=0.064 Sum_probs=120.6
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEe---cCCCceeEEEEecCCCCEEEEeeCC----
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEM---PTRSKLSCLSWNKYTKNLIASSDYD---- 400 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~~~~~~~~~l~s~~~d---- 400 (597)
....+.+++++++|+++++ . ++.|.+||..++.... .... .....+..++++| +++++++...+
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~------~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~ 122 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVV------LATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAP 122 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEE------EEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBT
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEE------EEecCCCCCCCCCCCEEECC-CCCEEEecCCccccc
Confidence 4567999999999995554 4 5679999987651110 0100 1124578899999 67766654321
Q ss_pred -----CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCc-eEEeecCCCcccCCCCeEEEEEcc-CCCcc-----eeee
Q 042883 401 -----GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPS-MLVSGSDDCKVGSADHHIHYYDLR-NISQP-----LHVF 468 (597)
Q Consensus 401 -----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~-~~~~~-----~~~~ 468 (597)
..-.||.+........+.......+.++|+| ++. ++++.+. ++.|.+||+. ..+.. ...+
T Consensus 123 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~-------~~~i~~~~~d~~~G~~~~~~~~~~~ 194 (297)
T 3g4e_A 123 AVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSL-------SYSVDAFDYDLQTGQISNRRSVYKL 194 (297)
T ss_dssp TBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGG-------GTEEEEEEECTTTCCEEEEEEEEEC
T ss_pred ccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCC-------CCcEEEEeccCCCCcccCcEEEEEC
Confidence 2234444432222222334445678999999 555 4455543 3458999874 21322 1222
Q ss_pred ccCCCceEEEEecCCCe-EEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEe-ecCCEEEEEeC
Q 042883 469 NGHKKAVSYVKFLSNNE-LASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLT-VNNEYIACGSE 533 (597)
Q Consensus 469 ~~~~~~v~~v~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~ 533 (597)
..+...+..+++++++. +++...++.|.+||..+++.+..+..+...+++++|. |+++.|++++.
T Consensus 195 ~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 195 EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 33345778999999954 4555567789999999899998888777789999998 88877665543
No 282
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=1.9e-11 Score=120.21 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=99.1
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec
Q 042883 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN 469 (597)
Q Consensus 390 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~ 469 (597)
.+..+++++.||.|+.||..+|+.+..+.. +.+.+..+.. ++.++++++. |+.|+.||..+ ++.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~-------dg~l~a~d~~t-G~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPN-------DGSLYTLGSKN-NEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTT-------TCCEEEC------CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCC-------CCEEEEEECCC-Cceeeeee
Confidence 467899999999999999999999888865 4555555554 5667776664 45599999977 44444433
Q ss_pred cCCC-ceE-EEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 470 GHKK-AVS-YVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 470 ~~~~-~v~-~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
.+.. .+. +..+..++.+++++.|+.|+.||..+|+.+..+..+. ...++|++..|++++.|+.|+.||..+|+.
T Consensus 77 ~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 77 FTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp CCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 2211 110 1111134678888999999999999999887776543 244567888899999999999999999987
Q ss_pred ccccccCCCCCCCcCcCCCcceEEEEEccCC---CeEEEecCcccEEEEEec
Q 042883 548 AASHRFGSDADHVDDDMGSYFISAVCWKSDS---PTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 548 ~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~---~~l~s~~~dg~v~iwd~~ 596 (597)
+..+.... ....+++++. ..+++++.||.|+.||..
T Consensus 153 ~W~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 153 RWNATYFD-------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp CCEEEEEE-------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred EEeEeccc-------------ccCccccCCccccceEEEECCCCEEEEEECC
Confidence 76654321 1222333322 456677788888888864
No 283
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=5.4e-11 Score=116.98 Aligned_cols=188 Identities=7% Similarity=-0.043 Sum_probs=103.8
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE 419 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 419 (597)
++..+++++.||.|+.||..++. ....... ..+.+..+.. ++..+++++.||.|+.||..+|+.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~--------~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS--------IKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC--------EEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--------EEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 57789999999999999998872 2222222 3333333444 566788888999999999988887666543
Q ss_pred ccc-eeEE-EEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEE
Q 042883 420 HEK-RAWS-VDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLR 496 (597)
Q Consensus 420 ~~~-~v~~-~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~ 496 (597)
+.. .+.+ ..+. .+..+++++ .++.|+.||..+ ++.+-.+..+. ...++|+ +.+++++.|+.|+
T Consensus 78 ~~~~~~~~sp~~~--~~~~v~~g~-------~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 78 TIPELVQASPCRS--SDGILYMGK-------KQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp CHHHHHTTCSCC-------CCCCE-------EEEEEEEECCC---------------------------EEEEEEEEEEE
T ss_pred cCccccccCceEe--cCCEEEEEe-------CCCEEEEEECCC-CcEEEEecCCC----cccccccCCEEEEEecCCEEE
Confidence 221 1111 1111 233455554 355699999987 56555554432 1334556 7899999999999
Q ss_pred EEEcCCCcceeeeeCCCCceeEEEEeecC---CEEEEEeCCCcEEEEEccCCcccccccc
Q 042883 497 LWDVKENLPLHTFRGHTNEKNFVGLTVNN---EYIACGSETNEVFVYHKAISKPAASHRF 553 (597)
Q Consensus 497 iwd~~~~~~~~~~~~~~~~v~~v~~s~~g---~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 553 (597)
.||..+++.+..+..+. ....+++.++ ..+++++.||.|+.||..+|+.+.....
T Consensus 144 a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 144 MYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp CCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred EEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 99999998776654221 1223343332 4567788999999999999988766653
No 284
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=8.8e-08 Score=89.47 Aligned_cols=222 Identities=9% Similarity=0.021 Sum_probs=139.1
Q ss_pred cEEEEEEcCCCCEE-EEeeCCCcEEEEecccCccCCccCCCCceEe-cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 331 IISSIEFDRDDELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEM-PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 331 ~v~~i~~~~~~~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
.+.+++|++++..| ++...++.|.++++.+.. ..... .......++++++.++.++++....+.|.++++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 46799999966555 455557899999987641 11111 222567899999854566666666789999998
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-cCCCceEEEEecCC-CeE
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~-~~l 486 (597)
..................++++|.++.++++.... ..+.|..+++.. .....+. ........++++++ +.|
T Consensus 109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-----~~~~I~~~~~dg--~~~~~~~~~~~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMDG--TNRRILAQDNLGLPNGLTFDAFSSQL 181 (267)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETTS--CCCEEEECTTCSCEEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-----CCcEEEEEecCC--CCcEEEEECCCCCCcEEEEcCCCCEE
Confidence 64332222222224678999998556655554321 134588888764 2233322 23346789999997 555
Q ss_pred -EEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCC
Q 042883 487 -ASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMG 565 (597)
Q Consensus 487 -~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h 565 (597)
++....+.|.++|.........+.+ ......+++. ++.++++...++.|.++|..+++.+..+..+.
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~---------- 249 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK---------- 249 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSS----------
T ss_pred EEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccc----------
Confidence 4555668899999875443333332 2334566653 34444444456899999999998887776431
Q ss_pred CcceEEEEEccCCC
Q 042883 566 SYFISAVCWKSDSP 579 (597)
Q Consensus 566 ~~~i~~v~~~~~~~ 579 (597)
.....+|++.|++.
T Consensus 250 ~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 250 QTRLYGITIALSQC 263 (267)
T ss_dssp CCCCCCEEEECSCC
T ss_pred ccccceeeecCccC
Confidence 22467788888764
No 285
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=1.8e-08 Score=97.92 Aligned_cols=243 Identities=14% Similarity=0.117 Sum_probs=144.9
Q ss_pred CCCCEEEE-eeCCCcEEEEecccCccCCccCCCC----ceEecCCCceeEEEEecCCCCEEEEeeCC------CcEEEEe
Q 042883 339 RDDELFAS-AGVSRRIKIFEFSSVVNEPRDVHYP----MVEMPTRSKLSCLSWNKYTKNLIASSDYD------GIVTIWD 407 (597)
Q Consensus 339 ~~~~~l~t-~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~~~~~~i~~v~~~~~~~~~l~s~~~d------g~i~iwd 407 (597)
+++++|++ +..++.|.|+|+.+........... +...........+...| ++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 67776654 6668899999987542221111100 00000112445677888 56 77776555 7899999
Q ss_pred CCCCeeeeEEeecc---ceeEEEEeCCCCCceEEeecC-------CCcc-----cCCCCeEEEEEccCCCcceeeeccC-
Q 042883 408 VTTSQSVMEYEEHE---KRAWSVDFSCTEPSMLVSGSD-------DCKV-----GSADHHIHYYDLRNISQPLHVFNGH- 471 (597)
Q Consensus 408 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~-------d~~~-----~~~d~~i~i~d~~~~~~~~~~~~~~- 471 (597)
..+++.+..+.... ..-+++.|+| +++.+++... .|.. +.....|.+||+.+ ++.+.++...
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCT
T ss_pred CCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCC
Confidence 99999988886322 2345688899 7777777641 1110 01356799999987 6666666532
Q ss_pred C-CceEEEEe--cCC-CeEEEe-e-----CCCcEEEEEcCCCcc--eeee--eC----------------CCCceeEEEE
Q 042883 472 K-KAVSYVKF--LSN-NELASA-S-----TDSSLRLWDVKENLP--LHTF--RG----------------HTNEKNFVGL 521 (597)
Q Consensus 472 ~-~~v~~v~~--~~~-~~l~s~-~-----~d~~v~iwd~~~~~~--~~~~--~~----------------~~~~v~~v~~ 521 (597)
. .....+.| +|+ .+++++ - .+++|.+|....+.. ...+ .. -......|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1 23445555 888 454444 4 667887766544321 1111 10 0234678999
Q ss_pred eecCCEEEEEeC-CCcEEEEEccC---CccccccccCCCCCCCc---CcCCCcceEEEEEccCCCeEEEec
Q 042883 522 TVNNEYIACGSE-TNEVFVYHKAI---SKPAASHRFGSDADHVD---DDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 522 s~~g~~l~~~~~-d~~i~iwd~~~---~~~~~~~~~~~~~~~~~---~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
|+||++|+++.. .+.|.+||+.. .+.+..+..+....... +..-.+....++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999888765 68999999863 23444444431100000 000022468899999999998887
No 286
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.05 E-value=1.5e-07 Score=87.77 Aligned_cols=230 Identities=7% Similarity=-0.020 Sum_probs=137.6
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeecc
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHE 421 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 421 (597)
.+|+.+. .+.|+.+++++........ .... ......+.+++|++.++.++++...++.|..+++.++.....+....
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~-~~~~-~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEA-KAFL-HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGC-EEEE-EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccc-eeee-cCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 3455554 3578888887641110000 0011 11124578999998555666666667899999987654433332222
Q ss_pred ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeC---CCcEEE
Q 042883 422 KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAST---DSSLRL 497 (597)
Q Consensus 422 ~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~---d~~v~i 497 (597)
..+..++++|.++.++++... .+.|.++|+.. ................++++|+ +.|+.+.. .+.|..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~-------~~~I~~~~~~g-~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQ-------LDRIEVAKMDG-TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETT-------TTEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred CCccEEEEEecCCeEEEEECC-------CCEEEEEEcCC-CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 467899999855566666543 34589999874 2222222222246789999996 77665554 368888
Q ss_pred EEcCCCcceeeee-CCCCceeEEEEeecCCEEEE-EeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEc
Q 042883 498 WDVKENLPLHTFR-GHTNEKNFVGLTVNNEYIAC-GSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWK 575 (597)
Q Consensus 498 wd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~ 575 (597)
+++... ....+. ........+++++++..|+. ....+.|.++|............ .....+++..
T Consensus 151 ~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------------~~~P~gi~~d 217 (267)
T 1npe_A 151 SHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------------LQYPFAVTSY 217 (267)
T ss_dssp EETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------------CCSEEEEEEE
T ss_pred EecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------------CCCceEEEEe
Confidence 887643 333332 22345788999998766554 45568999999875443322221 2234567765
Q ss_pred cCCCeEEEecCcccEEEEEec
Q 042883 576 SDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 576 ~~~~~l~s~~~dg~v~iwd~~ 596 (597)
++..+++...++.|.++|.+
T Consensus 218 -~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 218 -GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp -TTEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEECCCCeEEEEeCC
Confidence 44455555567888888764
No 287
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.03 E-value=2.2e-11 Score=115.06 Aligned_cols=49 Identities=20% Similarity=0.594 Sum_probs=43.9
Q ss_pred CcCCCCCccccccccccccccccccccc-ccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 32 DTEVDRDTLCPICKQLMTDAFMTACGHS-FCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 32 ~~~~~~~l~C~IC~~~f~~P~~l~CgH~-FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
...+++++.|+||++.+.+|+.+||||+ ||+.|+.++ ..||.||..+..
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred HHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4467788999999999999999999999 999999876 579999998863
No 288
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.03 E-value=1.3e-08 Score=98.41 Aligned_cols=204 Identities=10% Similarity=0.056 Sum_probs=130.1
Q ss_pred cEEEEEEcCCCCEEEEeeC--CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 331 IISSIEFDRDDELFASAGV--SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
....++|+|||++++++.. ++.|.++|+.+. .......-.+ +..+.|.+...+++.+.||.+.+.++
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~--------~vv~tI~v~g---~~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--------AFKRMLDVPD---CYHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTT--------EEEEEEECCS---EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC--------cEEEEEECCC---cceeecCCCceeEEECCCCCEEEEEC
Confidence 3446899999999988864 689999999886 2222221111 12233445667778888999999998
Q ss_pred CC-CeeeeEEeec----cceeE-EEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC-cceeeec---------c-C
Q 042883 409 TT-SQSVMEYEEH----EKRAW-SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS-QPLHVFN---------G-H 471 (597)
Q Consensus 409 ~~-~~~~~~~~~~----~~~v~-~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~-~~~~~~~---------~-~ 471 (597)
.+ ++.......+ ..++. ...|.+.++.++.... +|.|+++|+.... ..+..+. + .
T Consensus 207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--------~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--------TGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp CSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--------TSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--------CCEEEEEECCCCcceeecceecccccccccccc
Confidence 76 5543211111 11221 1344322555444322 4569999987522 1122111 0 1
Q ss_pred CCceEEEEecCC-CeEEEeeC----------CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCC-EEEEE-eCCCcEE
Q 042883 472 KKAVSYVKFLSN-NELASAST----------DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE-YIACG-SETNEVF 538 (597)
Q Consensus 472 ~~~v~~v~~~~~-~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~-~~d~~i~ 538 (597)
.+....++++++ +++++... .+.|.++|+.+++.+..+.. ...++++++++||+ +|+++ ..++.|.
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~Vs 357 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLY 357 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEE
Confidence 123345777888 66665432 25799999999999998874 23678999999996 66664 4589999
Q ss_pred EEEccCCccccccccC
Q 042883 539 VYHKAISKPAASHRFG 554 (597)
Q Consensus 539 iwd~~~~~~~~~~~~~ 554 (597)
++|..+++.+.++..+
T Consensus 358 ViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 358 IHDAESGEELRSVNQL 373 (386)
T ss_dssp EEETTTCCEEEEECCC
T ss_pred EEECCCCcEEEEecCC
Confidence 9999999999888763
No 289
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=7.5e-08 Score=88.04 Aligned_cols=203 Identities=11% Similarity=-0.015 Sum_probs=133.8
Q ss_pred ceeEEEEecCCCCEEEEeeC--CCcEEEEeCCCCeeeeEEeecc-ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 380 KLSCLSWNKYTKNLIASSDY--DGIVTIWDVTTSQSVMEYEEHE-KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
...+++|++ ++.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.+.++.-. ++.+.++
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~-------~~~v~vi 91 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL-------KNIGFIY 91 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT-------CSEEEEE
T ss_pred CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec-------CCEEEEE
Confidence 457899998 4555544443 5799999999999888775222 223356665 4455555543 4559999
Q ss_pred EccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeCCC-----CceeEEEEeecCCEEEE
Q 042883 457 DLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRGHT-----NEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 457 d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~v~~s~~g~~l~~ 530 (597)
|..+ .+.+..+......-..++ ++ +.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|..++.
T Consensus 92 D~~t-~~v~~~i~~g~~~g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn 167 (266)
T 2iwa_A 92 DRRT-LSNIKNFTHQMKDGWGLA--TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN 167 (266)
T ss_dssp ETTT-TEEEEEEECCSSSCCEEE--ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred ECCC-CcEEEEEECCCCCeEEEE--ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe
Confidence 9987 667777753212223344 45 555555578899999999988888776321 135678887 7765555
Q ss_pred EeCCCcEEEEEccCCccccccccCCCCCC--CcCcCCCcceEEEEEccCCCe-EEEecCcccEEEEEec
Q 042883 531 GSETNEVFVYHKAISKPAASHRFGSDADH--VDDDMGSYFISAVCWKSDSPT-MLTANRKGAIKVLVLA 596 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~~~-l~s~~~dg~v~iwd~~ 596 (597)
...++.|.+.|..+++.+..+..+..... ..........++|+|+|+++. ++++...+.|.+-++.
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 55678999999999999888876310000 000001246799999999865 5667778888887764
No 290
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.00 E-value=3.1e-08 Score=94.63 Aligned_cols=195 Identities=10% Similarity=0.039 Sum_probs=125.4
Q ss_pred cCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEE
Q 042883 376 PTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455 (597)
Q Consensus 376 ~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i 455 (597)
.......+..|+|+++.+++++..++.|..|+. ++. ...+..+...+..+++++ ++.++++... ++.|.+
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~-------~~~v~~ 111 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHG-------RRAITR 111 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETT-------TTEEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECC-------CCEEEE
Confidence 344567789999944447888888899999998 444 345555667789999999 7777666543 234888
Q ss_pred EEccCCCcceeeecc-----CCCceEEEEecCCCeEEE-----eeC-------------CCcEEEEEcCCCcceeeeeCC
Q 042883 456 YDLRNISQPLHVFNG-----HKKAVSYVKFLSNNELAS-----AST-------------DSSLRLWDVKENLPLHTFRGH 512 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~l~s-----~~~-------------d~~v~iwd~~~~~~~~~~~~~ 512 (597)
||.. +. +..+.. ....+..+++++++.+.. |.. .+.|..||..+++..... .
T Consensus 112 ~~~~--g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~ 186 (305)
T 3dr2_A 112 SDAD--GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D 186 (305)
T ss_dssp ECTT--SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred ECCC--CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence 9875 33 222211 113467899999955444 332 256788887666654433 3
Q ss_pred CCceeEEEEeecCCEEEEEeCC------CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 513 TNEKNFVGLTVNNEYIACGSET------NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 513 ~~~v~~v~~s~~g~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
....+.++|+|||+.|+++... +.|++|++..+.......+... ....+.+++++++|.++++. .
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--------~~~~pdgi~~d~~G~lwv~~-~ 257 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--------PDGLPDGFCVDRGGWLWSSS-G 257 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--------SSSCCCSEEECTTSCEEECC-S
T ss_pred CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--------CCCCCCeEEECCCCCEEEec-C
Confidence 4456789999999977776654 7899999876541111111000 12345678999999855554 4
Q ss_pred cccEEEEEe
Q 042883 587 KGAIKVLVL 595 (597)
Q Consensus 587 dg~v~iwd~ 595 (597)
+| |.+|+.
T Consensus 258 ~g-v~~~~~ 265 (305)
T 3dr2_A 258 TG-VCVFDS 265 (305)
T ss_dssp SE-EEEECT
T ss_pred Cc-EEEECC
Confidence 54 888874
No 291
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.96 E-value=2.4e-07 Score=89.28 Aligned_cols=186 Identities=8% Similarity=-0.013 Sum_probs=117.3
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC------CCc
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY------DGI 402 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~------dg~ 402 (597)
...|.+++|+++|+++++. .+ .|.+||..++...... ... .......+.+++++| +++++++... .+.
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~-~~~--~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~ 162 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA-ELE--SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGS 162 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE-CSS--TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe-eCC--CCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceE
Confidence 4579999999999877654 44 4889998765111000 000 001123588999999 6676665432 245
Q ss_pred EEEEeCCCCeeeeEEeeccceeEEEEeCCCCCce-EEeecCCCcccCCCCeEEEEEcc--CCC-cc-----eeeeccCCC
Q 042883 403 VTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSM-LVSGSDDCKVGSADHHIHYYDLR--NIS-QP-----LHVFNGHKK 473 (597)
Q Consensus 403 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~~~~~~d~~i~i~d~~--~~~-~~-----~~~~~~~~~ 473 (597)
|..++ +++... +.........++|+| ++.. +++.+. ++.|.+||+. + + .. ...+.....
T Consensus 163 l~~~~--~g~~~~-~~~~~~~~~~i~~s~-dg~~lyv~~~~-------~~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~ 230 (326)
T 2ghs_A 163 IYHVA--KGKVTK-LFADISIPNSICFSP-DGTTGYFVDTK-------VNRLMRVPLDART-GLPTGKAEVFIDSTGIKG 230 (326)
T ss_dssp EEEEE--TTEEEE-EEEEESSEEEEEECT-TSCEEEEEETT-------TCEEEEEEBCTTT-CCBSSCCEEEEECTTSSS
T ss_pred EEEEe--CCcEEE-eeCCCcccCCeEEcC-CCCEEEEEECC-------CCEEEEEEccccc-CCcccCceEEEECCCCCC
Confidence 66666 454332 323334578899999 6654 454442 3459999986 3 3 21 222223345
Q ss_pred ceEEEEecCCCeEEEe-eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEe-ecCCEEEEEeC
Q 042883 474 AVSYVKFLSNNELASA-STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLT-VNNEYIACGSE 533 (597)
Q Consensus 474 ~v~~v~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~ 533 (597)
.+..+++++++.+.++ ..++.|.+||. +++.+..+..+...+++++|+ +++..|++++.
T Consensus 231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 231 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 6788999988555444 45678999998 577777777666678999998 88877655544
No 292
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.96 E-value=6.7e-08 Score=87.09 Aligned_cols=192 Identities=12% Similarity=0.126 Sum_probs=128.3
Q ss_pred ceeEEEEecCCCCEEEEeeCCC--cEEEEeCCCCeeeeEEeeccceeE--EEEeCCCCCceEEeecCCCcccCCCCeEEE
Q 042883 380 KLSCLSWNKYTKNLIASSDYDG--IVTIWDVTTSQSVMEYEEHEKRAW--SVDFSCTEPSMLVSGSDDCKVGSADHHIHY 455 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i 455 (597)
...++.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-.. ... .+++. ++.+.+.... ++.+.+
T Consensus 44 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~-------~~~v~v 111 (262)
T 3nol_A 44 FTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWK-------NGLGFV 111 (262)
T ss_dssp EEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESS-------SSEEEE
T ss_pred ccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEee-------CCEEEE
Confidence 45788888 466777777766 89999999999888875432 333 34544 4455555443 455999
Q ss_pred EEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCC-----CceeEEEEeecCCEEEE
Q 042883 456 YDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHT-----NEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~v~~s~~g~~l~~ 530 (597)
||..+ .+.+.++.... .-..+++. .+.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|..++.
T Consensus 112 ~D~~t-~~~~~ti~~~~-eG~glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 112 WNIRN-LRQVRSFNYDG-EGWGLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EETTT-CCEEEEEECSS-CCCCEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECcc-CcEEEEEECCC-CceEEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 99988 77777776432 22344432 2555555557889999999998888876421 234457775 7766655
Q ss_pred EeCCCcEEEEEccCCccccccccCCCCCCCc-CcCCCcceEEEEEccCCCeEEEecCc
Q 042883 531 GSETNEVFVYHKAISKPAASHRFGSDADHVD-DDMGSYFISAVCWKSDSPTMLTANRK 587 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~~~l~s~~~d 587 (597)
.-.++.|.+.|..+++.+..+.+........ ...-....++|||+|+++.|+..+..
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 5568899999999999988887753211110 01114568999999988877666543
No 293
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.96 E-value=5.2e-08 Score=96.03 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=143.7
Q ss_pred CCCCEEEEeeC-C----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee----------CCCcE
Q 042883 339 RDDELFASAGV-S----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD----------YDGIV 403 (597)
Q Consensus 339 ~~~~~l~t~~~-d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~----------~dg~i 403 (597)
+++..+++... + +.|.++|..+. .......-.... .++++| +++.++++. .++.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP-HPVAAE-DGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC-EEEECT-TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC-ceEECC-CCCEEEEEeccccccccCCCCCEE
Confidence 45666655544 2 69999999876 222222212223 899999 566666654 46789
Q ss_pred EEEeCCCCeeeeEEeec-------cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceE
Q 042883 404 TIWDVTTSQSVMEYEEH-------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVS 476 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 476 (597)
.++|..+++.+..+.-. ......+.|+| ++++++++... .++.|.++|+.+ .+.+..+.... .
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~-----~~~~VsVID~~t-~kvv~~I~v~g--~- 221 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFS-----PAPAVGVVDLEG-KTFDRMLDVPD--C- 221 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECS-----SSCEEEEEETTT-TEEEEEEECCS--E-
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecC-----CCCeEEEEECCC-CeEEEEEEcCC--c-
Confidence 99999999888877532 23467899999 66666665421 135599999997 66666665321 1
Q ss_pred EEEecCC--CeEEEeeCCCcEEEEEcCCCcceee----eeCCCCce-eEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 477 YVKFLSN--NELASASTDSSLRLWDVKENLPLHT----FRGHTNEK-NFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 477 ~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~~~v-~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
....|+ ..+++.+.||.+.+.|..+++.... +.....++ ..+.|+++|..++..+..+.|.+.|...+....
T Consensus 222 -~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 222 -YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp -EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred -eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 223343 5677788899999889866655422 22111221 235678898877777788999999986654221
Q ss_pred --ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC----------cccEEEEEecC
Q 042883 550 --SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR----------KGAIKVLVLAA 597 (597)
Q Consensus 550 --~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~----------dg~v~iwd~~~ 597 (597)
.+......... ..........++++|++..+++... ++.|.++|+.+
T Consensus 301 ~~~~~~~~~~~i~-~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 301 RAPIEALTEAERA-DDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp CCCEESSCTTTGG-GTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred eeeeeeccccccc-cccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 11110000000 0000112224789999887766532 45788888753
No 294
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.95 E-value=6.3e-08 Score=94.20 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=130.7
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCC----eeeeEEe------e-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 388 KYTKNLIASSDYDGIVTIWDVTTS----QSVMEYE------E-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 388 ~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
++...+++.|..++.|+|+|+.+. +.+.++. . .......+...| ++ +++++..+. .|...+.|.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~-~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNE-EGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEET-TSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCc-CCCCCCeEEEE
Confidence 534456666778899999998755 5556553 1 112566778888 66 666654432 23456789999
Q ss_pred EccCCCcceeeeccCC---CceEEEEecCC-CeEEEee-------------------CCCcEEEEEcCCCcceeeeeCC-
Q 042883 457 DLRNISQPLHVFNGHK---KAVSYVKFLSN-NELASAS-------------------TDSSLRLWDVKENLPLHTFRGH- 512 (597)
Q Consensus 457 d~~~~~~~~~~~~~~~---~~v~~v~~~~~-~~l~s~~-------------------~d~~v~iwd~~~~~~~~~~~~~- 512 (597)
|..+ .+.+..+.... .--..+.|+|+ +.+++.. .+++|.+||+.+++.+.++...
T Consensus 170 D~~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 170 DHYS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp CTTT-CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred ECCC-CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 9997 66777765221 22345888999 6666664 3689999999998888887642
Q ss_pred C-CceeEEEE--eecCCEEEEEe------CCCcEEEEEccCCcccc--ccccCCC--CCCC----cC-cCCCcceEEEEE
Q 042883 513 T-NEKNFVGL--TVNNEYIACGS------ETNEVFVYHKAISKPAA--SHRFGSD--ADHV----DD-DMGSYFISAVCW 574 (597)
Q Consensus 513 ~-~~v~~v~~--s~~g~~l~~~~------~d~~i~iwd~~~~~~~~--~~~~~~~--~~~~----~~-~~h~~~i~~v~~ 574 (597)
. .....+.| +|+|++++++. .++.|.+|....+.... .+..... .... .. .+-...+..|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1 23445655 99999887776 46688877765432111 1111110 0000 00 000235788999
Q ss_pred ccCCCeEEEec-CcccEEEEEec
Q 042883 575 KSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 575 ~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
++||++|+++. ..+.|.+||++
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEEeCCCCEEEEEEec
Confidence 99999987765 47899999984
No 295
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.95 E-value=8.5e-11 Score=91.25 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=0.5
Q ss_pred Ccccccccccccccc------------------cccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 38 DTLCPICKQLMTDAF------------------MTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~------------------~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
+-+|+||++.|.+|. .++|||.|+..||.+|+.....||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 458999999998852 2589999999999999999888999999865
No 296
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=5.6e-08 Score=93.89 Aligned_cols=216 Identities=8% Similarity=0.067 Sum_probs=143.5
Q ss_pred CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeec
Q 042883 341 DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEH 420 (597)
Q Consensus 341 ~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 420 (597)
+..+..++.++.|..||.. +. ...........+.++...+ ++ .++.++.++.|..||.. +.....+...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~-~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~ 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSE-DG-TIYVGSNDNYLYAINPD-GTEKWRFKTN 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECT-TS-CEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred CCEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcC-CC-EEEEEcCCCEEEEECCC-CCEeEEEecC
Confidence 4567778888899999877 41 1111111233445556654 34 46677778999999988 7777666655
Q ss_pred cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEc
Q 042883 421 EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDV 500 (597)
Q Consensus 421 ~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~ 500 (597)
...+.++.+.+ ++.+++.+ +. |..|| .+ +..+..+......+.++...+++.|.+++.++.|..+|.
T Consensus 176 ~~~~~~~~~d~-~g~l~v~t---~~-------l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 176 DAITSAASIGK-DGTIYFGS---DK-------VYAIN-PD-GTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP 242 (330)
T ss_dssp SCCCSCCEECT-TCCEEEES---SS-------EEEEC-TT-SCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT
T ss_pred CCceeeeEEcC-CCEEEEEe---CE-------EEEEC-CC-CcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC
Confidence 55677777765 55555543 22 88999 44 455545544456678888888888888988889999984
Q ss_pred CCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 501 KENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 501 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
+++.+..+......+..+.+.++| .|.+++.+|.|..||. +++.+..+..+ ...+.++..+++|.
T Consensus 243 -~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-----------~~~~~~~~~d~~g~- 307 (330)
T 3hxj_A 243 -DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-----------SWIIATPVIDENGT- 307 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-----------SCCCSCCEECTTCC-
T ss_pred -CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-----------CccccceEEcCCCE-
Confidence 566666665544444556665556 4666778888999995 66665555432 34566777777775
Q ss_pred EEEecCcccEEEEEe
Q 042883 581 MLTANRKGAIKVLVL 595 (597)
Q Consensus 581 l~s~~~dg~v~iwd~ 595 (597)
|..|+.+|.+++...
T Consensus 308 l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 308 IYFGTRNGKFYALFN 322 (330)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEEcCCCeEEEEec
Confidence 566888999988764
No 297
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.92 E-value=1.9e-08 Score=97.84 Aligned_cols=205 Identities=7% Similarity=-0.057 Sum_probs=126.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEeeC-----CCcEEEEecccCccC-CccCCCCceEecCCCceeEEEEecCCCCEEEEee--
Q 042883 327 HAANIISSIEFDRDDELFASAGV-----SRRIKIFEFSSVVNE-PRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-- 398 (597)
Q Consensus 327 ~~~~~v~~i~~~~~~~~l~t~~~-----d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-- 398 (597)
+|...+.+++|+++++++++... ++.|.+||+.++... ........ ..+...+..+++++.++..+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCcc
Confidence 46678999999999887666544 578999998866200 00000000 112345688999984455556655
Q ss_pred -CCCcEEEEeCCCCeeeeEEeec-----------------------------cceeEEEEeCCCCCceEEeecCCCcccC
Q 042883 399 -YDGIVTIWDVTTSQSVMEYEEH-----------------------------EKRAWSVDFSCTEPSMLVSGSDDCKVGS 448 (597)
Q Consensus 399 -~dg~i~iwd~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~~l~s~~~d~~~~~ 448 (597)
.++.|.+||+.+++....+.+| ...+..|+|+| ++..++.+..++
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~---- 216 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHS---- 216 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSC----
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCC----
Confidence 6789999999877665544321 02368899999 666666555333
Q ss_pred CCCeEEEEEccC--CCc-----cee--eeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCCcceeeeeC-CCCcee
Q 042883 449 ADHHIHYYDLRN--ISQ-----PLH--VFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKENLPLHTFRG-HTNEKN 517 (597)
Q Consensus 449 ~d~~i~i~d~~~--~~~-----~~~--~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~ 517 (597)
+.++.++... ... ... ...++......++++++ ..+++...++.|.+||..+++....... +...+.
T Consensus 217 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~ 294 (343)
T 2qe8_A 217 --TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTD 294 (343)
T ss_dssp --SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEE
T ss_pred --CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCC
Confidence 2355555421 010 000 11133445678899999 5666777788999999855653333322 244578
Q ss_pred EEEEeecCCEEEEEeCCCcEEEE
Q 042883 518 FVGLTVNNEYIACGSETNEVFVY 540 (597)
Q Consensus 518 ~v~~s~~g~~l~~~~~d~~i~iw 540 (597)
+++|+++|.++++.+..+.+.+|
T Consensus 295 ~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 295 SFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EEEECTTSCEEEEECCGGGSGGG
T ss_pred eeEECCCCcEEEEeCcccccccc
Confidence 99999999888777655544444
No 298
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.92 E-value=2.9e-07 Score=82.31 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=129.9
Q ss_pred EecCC--CceeEEEEecCCCCEEEEeeCCC--cEEEEeCCCCeeeeEEeeccce-eEEEEeCCCCCceEEeecCCCcccC
Q 042883 374 EMPTR--SKLSCLSWNKYTKNLIASSDYDG--IVTIWDVTTSQSVMEYEEHEKR-AWSVDFSCTEPSMLVSGSDDCKVGS 448 (597)
Q Consensus 374 ~~~~~--~~i~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~~~~ 448 (597)
.++|. ....++.|+. +.++.+.+.+| .|+++|+.+++.+..+.-.... --.+++. ++.+++....
T Consensus 14 ~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~------ 83 (243)
T 3mbr_X 14 RYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWR------ 83 (243)
T ss_dssp EEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS------
T ss_pred EcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEee------
Confidence 33444 3466899985 56666666654 8999999999998877533221 1234444 4555555543
Q ss_pred CCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCC-----CceeEEEEee
Q 042883 449 ADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHT-----NEKNFVGLTV 523 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~v~~s~ 523 (597)
++.+.+||..+ .+.+.++.... .-..+++.. +.|+.+..++.|.++|..+.+.+.++.-.. ..++-+.|.
T Consensus 84 -~~~v~v~D~~t-l~~~~ti~~~~-~Gwglt~dg-~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 84 -NHEGFVYDLAT-LTPRARFRYPG-EGWALTSDD-SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp -SSEEEEEETTT-TEEEEEEECSS-CCCEEEECS-SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred -CCEEEEEECCc-CcEEEEEeCCC-CceEEeeCC-CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 45599999987 77777776432 224565432 455555568899999999998888876322 234455654
Q ss_pred cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC--cCCCcceEEEEEccCCCeEEEecC
Q 042883 524 NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD--DMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 524 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
+|..++..-.+..|.+.|..+++.+..+..+........ ..-....++|+|+|+++.|+..+.
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 676665555678999999999999888876642221111 111457899999998777666553
No 299
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=2e-07 Score=85.17 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=128.4
Q ss_pred CcEEEEEEcCCCCEEEEeeC--CCcEEEEecccCccCCccCCCCceEe--cCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 330 NIISSIEFDRDDELFASAGV--SRRIKIFEFSSVVNEPRDVHYPMVEM--PTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.....+.|++++.++++.+. ++.|.++|+.++ ...... +......++++. ++.++++.-.++.+.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--------~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--------KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--------CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--------CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEE
Confidence 34689999998754444443 579999999887 111111 122233355665 3455556666889999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC-----CCceEEEEe
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH-----KKAVSYVKF 480 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~v~~ 480 (597)
+|..+.+.+.++......-+.++ +++..++++.+ ++.|.++|..+ .+.+..+.-. -..++.+.|
T Consensus 91 iD~~t~~v~~~i~~g~~~g~glt--~Dg~~l~vs~g--------s~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDGWGLA--TDGKILYGSDG--------TSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp EETTTTEEEEEEECCSSSCCEEE--ECSSSEEEECS--------SSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEE
T ss_pred EECCCCcEEEEEECCCCCeEEEE--ECCCEEEEECC--------CCeEEEEECCC-CcEEEEEEECCCCcccccceeEEE
Confidence 99999999888853212223444 42444454432 35699999987 5555555421 123678888
Q ss_pred cCCCeEEEee-CCCcEEEEEcCCCcceeeeeCC-------------CCceeEEEEeecCCE-EEEEeCCCcEEEEEccCC
Q 042883 481 LSNNELASAS-TDSSLRLWDVKENLPLHTFRGH-------------TNEKNFVGLTVNNEY-IACGSETNEVFVYHKAIS 545 (597)
Q Consensus 481 ~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~-------------~~~v~~v~~s~~g~~-l~~~~~d~~i~iwd~~~~ 545 (597)
. ++.+++.. .++.|.+.|..+++.+..+... ....+.|+|+|+++. ++++...+.|++.++...
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 8 65655554 5789999999999998888632 135689999999875 555667889999988664
Q ss_pred c
Q 042883 546 K 546 (597)
Q Consensus 546 ~ 546 (597)
.
T Consensus 239 ~ 239 (266)
T 2iwa_A 239 R 239 (266)
T ss_dssp C
T ss_pred c
Confidence 3
No 300
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=4.8e-08 Score=87.98 Aligned_cols=190 Identities=8% Similarity=0.004 Sum_probs=127.9
Q ss_pred ceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeE--EEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAW--SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
...++.|+ ++.++++.+.+|.|+++|+.+++.+..+ - ..... .+++. ++.+++.... ++.+.+||
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~-------~~~v~V~D 122 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWT-------EGLLFTWS 122 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESS-------SCEEEEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEcc-------CCEEEEEE
Confidence 34688887 4677888888899999999999988877 2 23333 36664 4455555443 45599999
Q ss_pred ccCCCcceeeeccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCC-----CceeEEEEeecCCEEEEEe
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHT-----NEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~v~~s~~g~~l~~~~ 532 (597)
..+ .+.+.++.... .-+.+++. .+.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|..++...
T Consensus 123 ~~T-l~~~~ti~~~~-eGwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 123 GMP-PQRERTTRYSG-EGWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp TTT-TEEEEEEECSS-CCCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CCc-CcEEEEEeCCC-ceeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 987 77777776422 22455543 2556666668899999999998888876322 134566776 776555555
Q ss_pred CCCcEEEEEccCCccccccccCCCCCCCc--CcCCCcceEEEEEccCCCeEEEecC
Q 042883 533 ETNEVFVYHKAISKPAASHRFGSDADHVD--DDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 533 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
.++.|.+.|..+++.+..+.+........ ...-....++|||+|+++.|+..+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 68899999999999888777642100000 0011457899999998766655543
No 301
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.88 E-value=9.9e-08 Score=102.20 Aligned_cols=204 Identities=13% Similarity=0.125 Sum_probs=120.7
Q ss_pred CCceeEEEEecCCCCEEEEe-----eCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCC---cc--c
Q 042883 378 RSKLSCLSWNKYTKNLIASS-----DYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDC---KV--G 447 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~~--~ 447 (597)
...+.+++|+| +++.|+.+ +....|++||+.+++.+... ........++|+ ++..++.+...+. .. .
T Consensus 128 ~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 128 TTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred cEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 44688899999 67766632 22357999999998865431 111123578899 4544444443321 00 0
Q ss_pred CCCCeEEEEEccCCCc-ceeee--cc-CCCceEEEEecCC-CeEEE-ee---CCCcEEEEEcCCCc-ceeeeeCCCCcee
Q 042883 448 SADHHIHYYDLRNISQ-PLHVF--NG-HKKAVSYVKFLSN-NELAS-AS---TDSSLRLWDVKENL-PLHTFRGHTNEKN 517 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~~-~~~~~--~~-~~~~v~~v~~~~~-~~l~s-~~---~d~~v~iwd~~~~~-~~~~~~~~~~~v~ 517 (597)
.....|++|++.+... ....+ .. |...+.++.|+|+ .+|+. .+ .++.|++||+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 1345699999876322 12223 23 4455788999999 44433 32 23579999998763 4555665655555
Q ss_pred EEEEeecCCEEEEEe-CC---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC-cc--cE
Q 042883 518 FVGLTVNNEYIACGS-ET---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR-KG--AI 590 (597)
Q Consensus 518 ~v~~s~~g~~l~~~~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~-dg--~v 590 (597)
.. |+++|..|+..+ .+ +.|..||+.++.......+. .|...+. .|++++++|+.... +| .|
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---------~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---------PERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---------CCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---------cCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 55 677776555443 33 67999999876542111111 0122333 88899988877654 33 57
Q ss_pred EEEEec
Q 042883 591 KVLVLA 596 (597)
Q Consensus 591 ~iwd~~ 596 (597)
++||++
T Consensus 353 ~~~d~~ 358 (693)
T 3iuj_A 353 EQFDYE 358 (693)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 788764
No 302
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.87 E-value=2.1e-06 Score=83.28 Aligned_cols=233 Identities=7% Similarity=-0.080 Sum_probs=140.1
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC
Q 042883 332 ISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS 411 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 411 (597)
.+|.+..+++ +|+.+. ...|+..++.+. ...........+.+++|++.++.++++-...+.|..+++..+
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~--------~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRS--------EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSC--------CEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCC--------eeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 3455555533 444333 445777777654 122223344568899999855666666667789999998765
Q ss_pred eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEe-
Q 042883 412 QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASA- 489 (597)
Q Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~- 489 (597)
.....+......+.++++.+.++.++++-.. .+.|.++++.. ......+.........++++|. +.|+..
T Consensus 106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~dG-~~~~~l~~~~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp SCEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTS-CSCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEeCCCCCccEEEEecCCCeEEEEcCC-------CCeEEEEcCCC-CceEEEEeCCCCCcceEEEecCcCeEEEec
Confidence 5433333223456788888756666666553 34589999874 3222233333456789999986 665544
Q ss_pred eCC-CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEE-EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCc
Q 042883 490 STD-SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYI-ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSY 567 (597)
Q Consensus 490 ~~d-~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~ 567 (597)
... +.|..+++........+.......+.++|+|++..| ++-...+.|..+|+...........+ ..
T Consensus 178 ~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-----------~~ 246 (349)
T 3v64_C 178 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----------LP 246 (349)
T ss_dssp CSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-----------CS
T ss_pred cCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-----------CC
Confidence 344 778888876433222222233456899999876555 44456688999998653322222111 33
Q ss_pred ceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 568 FISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 568 ~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
...++++. .+..+++....+.|..++
T Consensus 247 ~P~giav~-~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 247 HPFAITVF-EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CceEEEEE-CCEEEEecCCCCeEEEEE
Confidence 46777773 455556666667776665
No 303
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=1.1e-07 Score=100.99 Aligned_cols=239 Identities=8% Similarity=-0.003 Sum_probs=145.2
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-EEEecCCCCEEEEeeC------CCcEEEEeCCCCe
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-LSWNKYTKNLIASSDY------DGIVTIWDVTTSQ 412 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~ 412 (597)
++..+++++.|+.|..+|..++............ .....+.+ .... +..+++++. +|.|+.||..+|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~--~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ--KGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTC--CSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc--CcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCCc
Confidence 3567888888999999999887221110000000 00011111 1111 344555543 6899999999999
Q ss_pred eeeEEeeccce--------------------------------eEEEEeCCCCCceEEeecCCCcc------------cC
Q 042883 413 SVMEYEEHEKR--------------------------------AWSVDFSCTEPSMLVSGSDDCKV------------GS 448 (597)
Q Consensus 413 ~~~~~~~~~~~--------------------------------v~~~~~~~~~~~~l~s~~~d~~~------------~~ 448 (597)
.+..+...... ...++++| ++..++.+..++.. ..
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCe
Confidence 88776532111 12467777 45555555443311 00
Q ss_pred CCCeEEEEEccCCCcceeeecc--CC-------CceEEEEecCC----CeEEEeeCCCcEEEEEcCCCcceeeeeCCC--
Q 042883 449 ADHHIHYYDLRNISQPLHVFNG--HK-------KAVSYVKFLSN----NELASASTDSSLRLWDVKENLPLHTFRGHT-- 513 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~~~~~~~--~~-------~~v~~v~~~~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-- 513 (597)
.-+.|..+|..+ ++.+-.+.. |. ....-+....+ ..++.++.+|.|+++|..+|+.+..+....
T Consensus 281 ~~~sv~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 281 YLASIVALDPDT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (677)
T ss_dssp TTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeEEEEEEECCC-CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence 113589999987 555544432 21 11122222223 358889999999999999999876654211
Q ss_pred ---------Cce------------------------eEEEEeecCCEEEEEeC---------------------------
Q 042883 514 ---------NEK------------------------NFVGLTVNNEYIACGSE--------------------------- 533 (597)
Q Consensus 514 ---------~~v------------------------~~v~~s~~g~~l~~~~~--------------------------- 533 (597)
.++ ..++|+|++.++++...
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 000 15788998887777543
Q ss_pred ----------------CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 534 ----------------TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 534 ----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.|.|..||+.+++.+.....+ .++.+..+...+.+++.++.||.+++||..+
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCC------------CCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 277999999999988777642 2344555667788889999999999999764
No 304
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.83 E-value=2.6e-06 Score=83.93 Aligned_cols=231 Identities=7% Similarity=-0.075 Sum_probs=140.7
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCee
Q 042883 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS 413 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 413 (597)
|.+..+. .+|+.+. ...|+.+++.+. ...........+.+++|++.++.++++-...+.|..+++..+..
T Consensus 81 C~~~~~~-~~l~~~~-~~~I~~i~~~~~--------~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 81 CKALGPE-PVLLFAN-RIDIRQVLPHRS--------EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp EEECSSC-CEEEEEC-BSCEEEECTTSC--------CCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred ECCcccc-ceeEeec-CccceeeccCCC--------cEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 4445553 3444333 456888887654 22233334556889999985566666766778999999876554
Q ss_pred eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEee-C
Q 042883 414 VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAS-T 491 (597)
Q Consensus 414 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~-~ 491 (597)
...+.........+++.+.++.++++-.. .+.|.++++.. ......+.........++++|. +.|+... .
T Consensus 151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~-------~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEETT-------TTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred EEEEeCCCCCccEEEEEeCCCeEEEEcCC-------CCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence 33333333456778888756666666553 34488888774 3222333333456789999987 6655444 3
Q ss_pred C-CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEE-EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcce
Q 042883 492 D-SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYI-ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI 569 (597)
Q Consensus 492 d-~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i 569 (597)
. +.|..+++................+.++|+|++..| ++-+..+.|..+|+...........+ ....
T Consensus 223 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-----------~~~P 291 (386)
T 3v65_B 223 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----------LPHP 291 (386)
T ss_dssp SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-----------CSSE
T ss_pred CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-----------CCCc
Confidence 4 678888876543333333334457899999875554 45556788999998653332222211 3346
Q ss_pred EEEEEccCCCeEEEecCcccEEEEE
Q 042883 570 SAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 570 ~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.+|++. .+.++++....+.|..++
T Consensus 292 ~giav~-~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 292 FAITVF-EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred eEEEEE-CCEEEEeeCCCCeEEEEE
Confidence 778873 455566666677777766
No 305
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.83 E-value=3.4e-07 Score=97.18 Aligned_cols=181 Identities=13% Similarity=0.150 Sum_probs=120.1
Q ss_pred eEEEEecCCCCEEEEeeCCC-------------------cEEEEeCCCCeeeeEEeeccc---------eeEEEEeCCCC
Q 042883 382 SCLSWNKYTKNLIASSDYDG-------------------IVTIWDVTTSQSVMEYEEHEK---------RAWSVDFSCTE 433 (597)
Q Consensus 382 ~~v~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~ 433 (597)
..++++| .++.++.+..++ .|..+|..+|+.+..+..... ...-+.... +
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-d 323 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-A 323 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-T
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-C
Confidence 3578888 567777776553 599999999998877653211 111122222 3
Q ss_pred C---ceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC-----------Cce------------------------
Q 042883 434 P---SMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK-----------KAV------------------------ 475 (597)
Q Consensus 434 ~---~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~~v------------------------ 475 (597)
+ ..++.++. +|.++++|..+ ++.+..+.... ..+
T Consensus 324 G~~~~~l~~~~~-------~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w 395 (677)
T 1kb0_A 324 GKPRKVILHAPK-------NGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW 395 (677)
T ss_dssp TEEEEEEEECCT-------TSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred CcEeeEEEEECC-------CCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC
Confidence 4 56666664 55699999987 55554332110 001
Q ss_pred EEEEecCC-CeEEEeeC-------------------------------------------CCcEEEEEcCCCcceeeeeC
Q 042883 476 SYVKFLSN-NELASAST-------------------------------------------DSSLRLWDVKENLPLHTFRG 511 (597)
Q Consensus 476 ~~v~~~~~-~~l~s~~~-------------------------------------------d~~v~iwd~~~~~~~~~~~~ 511 (597)
..++++|+ +++++... .|.|..||+.+++.+-++..
T Consensus 396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 475 (677)
T 1kb0_A 396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH 475 (677)
T ss_dssp SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC
Confidence 15678888 77766533 27899999999998877763
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 512 HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 512 ~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
...+....+..+|.++++++.||.+++||..+++.+..+..+. ...-.-+.|..+|+.+++
T Consensus 476 -~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----------~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 476 -VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----------GVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp -SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----------CCCSCCEEEEETTEEEEE
T ss_pred -CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----------CcccCCEEEEeCCEEEEE
Confidence 3345556677888899999999999999999999998887653 222234566778865443
No 306
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=78.63 Aligned_cols=53 Identities=17% Similarity=0.473 Sum_probs=44.1
Q ss_pred CCCCCccccccccccc--cccccccc-----ccccHHHHHHhhcCCC--CCCCCCCCCcccc
Q 042883 34 EVDRDTLCPICKQLMT--DAFMTACG-----HSFCYTCIFTHLRNKS--DCPCCGCHLTCKH 86 (597)
Q Consensus 34 ~~~~~l~C~IC~~~f~--~P~~l~Cg-----H~FC~~Cl~~~~~~~~--~CP~Cr~~~~~~~ 86 (597)
.-.++..|+||++.|. +|+.+||. |.|...||.+|+.... .||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3345678999999885 68889996 9999999999998654 6999999997643
No 307
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.83 E-value=1.2e-06 Score=84.18 Aligned_cols=252 Identities=9% Similarity=0.051 Sum_probs=145.1
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCc------------eEecCCCceeEEEEecCCCCEEEEee
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPM------------VEMPTRSKLSCLSWNKYTKNLIASSD 398 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~------------~~~~~~~~i~~v~~~~~~~~~l~s~~ 398 (597)
...+++|++++.+++++..++.|..|+..+............ ........+.++++.+.++ .|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEE
Confidence 355788999998788888899999998765411000000000 0000113578899987334 455554
Q ss_pred CCCcEEEEeCCCCeeeeEEee-----ccceeEEEEeCCCCCceEEeecCCC-c---------ccCCCCeEEEEEccCCCc
Q 042883 399 YDGIVTIWDVTTSQSVMEYEE-----HEKRAWSVDFSCTEPSMLVSGSDDC-K---------VGSADHHIHYYDLRNISQ 463 (597)
Q Consensus 399 ~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~-~---------~~~~d~~i~i~d~~~~~~ 463 (597)
..+.|..+|..++.. ..+.. ....+.++++.+.++.++++..... . .+..++.|..||..+ +.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~ 176 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST-KE 176 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT-TE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC-CE
Confidence 455688898775542 22211 1134788999873445555543210 0 011346788998764 32
Q ss_pred ceeeeccCCCceEEEEecCC-CeEEEe-eCCCcEEEEEcCCCc--ceeeeeCCCCceeEEEEeecCCEEEEEeC------
Q 042883 464 PLHVFNGHKKAVSYVKFLSN-NELASA-STDSSLRLWDVKENL--PLHTFRGHTNEKNFVGLTVNNEYIACGSE------ 533 (597)
Q Consensus 464 ~~~~~~~~~~~v~~v~~~~~-~~l~s~-~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------ 533 (597)
+..+.........++|+|+ +.|+++ +..+.|.+||+.... ....+....+ ...++++++|+++++...
T Consensus 177 -~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 -TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp -EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred -EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 2222212234567999999 545444 566899999987521 1122211223 678999999987766544
Q ss_pred ----CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 534 ----TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 534 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
.+.|..||. .++.+..+..+.. .....++.+++ .++.++++...++.|.++++.
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g-------~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPP-------FAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTT-------TTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCC-------CccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 467888886 3665554443210 00234666766 366666776678889998864
No 308
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.82 E-value=2.3e-06 Score=81.53 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=133.7
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC--cEEEEe
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG--IVTIWD 407 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg--~i~iwd 407 (597)
.....++|++++.++++...++.|..|+..+. ..........+.++++.+ +++++++..... .|..+|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEc
Confidence 46779999999987777777899999987653 111122235688999998 566665554322 477777
Q ss_pred CCCCeeeeEEee-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee---------eccCCCceEE
Q 042883 408 VTTSQSVMEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV---------FNGHKKAVSY 477 (597)
Q Consensus 408 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~~v~~ 477 (597)
..+++....... .......++..+ ++..+++... ++.|+++|.......+.. ..........
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~-------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETT-------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred CCCCeEEEEEeCCCccccCcccccC-CCcEEEEECC-------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 777765332221 122234455444 5555555432 345888887641111110 0011123455
Q ss_pred EEecCC-Ce-EEEeeCCCcEEEEEcCC-Ccc--eeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc--c
Q 042883 478 VKFLSN-NE-LASASTDSSLRLWDVKE-NLP--LHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA--S 550 (597)
Q Consensus 478 v~~~~~-~~-l~s~~~d~~v~iwd~~~-~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~--~ 550 (597)
+ +++ +. +++-...+.|..||+.. ++. ...+.. ......++++++|+++++....+.|.+||.. ++... .
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~ 249 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ 249 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence 5 666 44 45556678999999874 321 112211 1345679999999987777778899999975 54422 2
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEc---cCCCeEEEec
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWK---SDSPTMLTAN 585 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~---~~~~~l~s~~ 585 (597)
...+ ...+++++|. |++..|+.++
T Consensus 250 ~~~~-----------~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 250 AEQG-----------VIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp GGGT-----------CTTEEEEEECCSTTTTTEEEEEE
T ss_pred cccc-----------cCCceEEEEecccCCCCEEEEEC
Confidence 2221 3468999998 8877766544
No 309
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.81 E-value=3.7e-07 Score=97.09 Aligned_cols=238 Identities=8% Similarity=0.039 Sum_probs=141.6
Q ss_pred CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCcee-EEEEecCCCCEEEEee------CCCcEEEEeCCCCee
Q 042883 341 DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLS-CLSWNKYTKNLIASSD------YDGIVTIWDVTTSQS 413 (597)
Q Consensus 341 ~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~ 413 (597)
+..+++++.|+.|..+|..++.......... .......+. +..+. ++ .++++. .+|.|+.||..+|+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~--~~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA--DHKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCS--CTTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcC--CCCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 5578888889999999998872211100000 000000111 01111 33 444443 368999999999998
Q ss_pred eeEEeecc------------------------------cee-EEEEeCCCCCceEEeecCCCcc------------cCCC
Q 042883 414 VMEYEEHE------------------------------KRA-WSVDFSCTEPSMLVSGSDDCKV------------GSAD 450 (597)
Q Consensus 414 ~~~~~~~~------------------------------~~v-~~~~~~~~~~~~l~s~~~d~~~------------~~~d 450 (597)
+..+.... ..+ ..++++| +..+++.+..++.. ...-
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~ 274 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFL 274 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 87764210 011 2467777 55666666544321 0011
Q ss_pred CeEEEEEccCCCcceeeecc--CC-------CceEEEEecCCC----eEEEeeCCCcEEEEEcCCCcceeeeeCCC----
Q 042883 451 HHIHYYDLRNISQPLHVFNG--HK-------KAVSYVKFLSNN----ELASASTDSSLRLWDVKENLPLHTFRGHT---- 513 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~--~~-------~~v~~v~~~~~~----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---- 513 (597)
+.|..||..+ ++.+-.+.. |. ..+.......++ .++.++.+|.++++|..+|+.+.......
T Consensus 275 ~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 275 SSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp TEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 2589999998 555544432 21 111111111233 58889999999999999998874322100
Q ss_pred ---------------------------------C--ceeEEEEeecCCEEEEEeC-------------------------
Q 042883 514 ---------------------------------N--EKNFVGLTVNNEYIACGSE------------------------- 533 (597)
Q Consensus 514 ---------------------------------~--~v~~v~~s~~g~~l~~~~~------------------------- 533 (597)
+ .-..++|+|+..++++...
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 0 0113788888777776522
Q ss_pred --------------------CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 534 --------------------TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 534 --------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
+|.|..||+.+++.+.....+ .++..-.+...+.+++.|+.||.|+.|
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------------~~~~~g~~~tagglvf~gt~dg~l~a~ 501 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV------------TIFNGGTLSTAGNLVFEGSADGRVIAY 501 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC------------CCccCccceECCCEEEEECCCCcEEEE
Confidence 377999999999988776643 223333556678899999999999999
Q ss_pred EecC
Q 042883 594 VLAA 597 (597)
Q Consensus 594 d~~~ 597 (597)
|.++
T Consensus 502 D~~t 505 (689)
T 1yiq_A 502 AADT 505 (689)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9764
No 310
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.81 E-value=1.2e-06 Score=86.39 Aligned_cols=227 Identities=7% Similarity=-0.020 Sum_probs=132.5
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecC--CCcee-EEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeE
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPT--RSKLS-CLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVME 416 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~i~-~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 416 (597)
.+..+++++.++.|..||..++...............+ ...+. .+.. .+..+++++.++.|..+|..+|+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 35677788888999999998772111100000000000 12222 2222 356778888899999999999988876
Q ss_pred EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCce-----EEEEecCCCeEEEeeC
Q 042883 417 YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAV-----SYVKFLSNNELASAST 491 (597)
Q Consensus 417 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v-----~~v~~~~~~~l~s~~~ 491 (597)
+............. ++ .++.++. ++.|+.+|..+ ++.+-.+....... ...... ++.+++++.
T Consensus 129 ~~~~~~~~~~p~~~--~~-~v~v~~~-------~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~ 196 (376)
T 3q7m_A 129 TKVAGEALSRPVVS--DG-LVLIHTS-------NGQLQALNEAD-GAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGD 196 (376)
T ss_dssp EECSSCCCSCCEEE--TT-EEEEECT-------TSEEEEEETTT-CCEEEEEECCC-----CCCCCCEEE-TTEEEECCT
T ss_pred EeCCCceEcCCEEE--CC-EEEEEcC-------CCeEEEEECCC-CcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcC
Confidence 65433222222222 33 4444443 45599999987 55544443221110 111111 477888999
Q ss_pred CCcEEEEEcCCCcceeeeeCCCCc----ee---EEEEe--ecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcC
Q 042883 492 DSSLRLWDVKENLPLHTFRGHTNE----KN---FVGLT--VNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDD 562 (597)
Q Consensus 492 d~~v~iwd~~~~~~~~~~~~~~~~----v~---~v~~s--~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 562 (597)
++.|..+|..+++.+......... +. .+... ..+..+++++.++.|..+|..+++.+.....+
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------- 268 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------- 268 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--------
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--------
Confidence 999999999999887766532110 00 01011 13567778888999999999999887655432
Q ss_pred cCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
....+.. ++..|+.++.+|.|..||..
T Consensus 269 -----~~~~~~~--~~~~l~~~~~~g~l~~~d~~ 295 (376)
T 3q7m_A 269 -----SVNDFIV--DGNRIYLVDQNDRVMALTID 295 (376)
T ss_dssp -----CEEEEEE--ETTEEEEEETTCCEEEEETT
T ss_pred -----CCCCceE--ECCEEEEEcCCCeEEEEECC
Confidence 2333443 35567777778888888764
No 311
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.80 E-value=8.3e-07 Score=80.00 Aligned_cols=181 Identities=8% Similarity=0.193 Sum_probs=118.5
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCC--cEEEEecccCccCCccCCCCceEecCCCceeE--EEEecCCCCEEEEeeCCCcEE
Q 042883 329 ANIISSIEFDRDDELFASAGVSR--RIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC--LSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~--v~~~~~~~~~l~s~~~dg~i~ 404 (597)
......+.|+ ++.++.+.+.+| .|+++|+.++ .......-.....+ ++.. ++.+++..-.++.+.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg--------kv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG--------KTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGF 110 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC--------CEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCC--------cEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEE
Confidence 4456889998 676666666655 8999999987 22222222233333 4443 455555555688999
Q ss_pred EEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC--C---CceEEEE
Q 042883 405 IWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH--K---KAVSYVK 479 (597)
Q Consensus 405 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~---~~v~~v~ 479 (597)
+||..+.+.+.++.... .-+.+++. +..++++.+ ++.|.++|..+ .+.+..+.-. . ..++.+.
T Consensus 111 v~D~~t~~~~~ti~~~~-eG~glt~d--g~~L~~SdG--------s~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDG-EGWGLTHN--DQYLIMSDG--------TPVLRFLDPES-LTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEETTTCCEEEEEECSS-CCCCEEEC--SSCEEECCS--------SSEEEEECTTT-CSEEEEEECEETTEECCCEEEEE
T ss_pred EEECccCcEEEEEECCC-CceEEecC--CCEEEEECC--------CCeEEEEcCCC-CeEEEEEEeccCCccccccceeE
Confidence 99999999998886432 33455542 444444432 34599999987 5555554421 1 3355677
Q ss_pred ecCCCeEEEee-CCCcEEEEEcCCCcceeeeeCC------------CCceeEEEEeecCCEEEEEeC
Q 042883 480 FLSNNELASAS-TDSSLRLWDVKENLPLHTFRGH------------TNEKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 480 ~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~------------~~~v~~v~~s~~g~~l~~~~~ 533 (597)
|. ++.|.+.. .++.|.+.|..+++.+..+... ....+.|+|+|+++.|++.+.
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 76 55655555 5789999999999998887631 135689999999877666654
No 312
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.79 E-value=9.8e-06 Score=77.39 Aligned_cols=223 Identities=6% Similarity=-0.062 Sum_probs=134.0
Q ss_pred EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC----CeeeeEEee
Q 042883 344 FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT----SQSVMEYEE 419 (597)
Q Consensus 344 l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~ 419 (597)
|+.+. ...|+..++.+. ...........+.+++|++.++.++++...++.|..+++.+ ......+..
T Consensus 4 ll~~~-~~~I~~i~~~~~--------~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRS--------EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEC-BSSEEEEETTSC--------CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred EEEEC-CCeEEEEECCCc--------ceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 44443 456888888765 22222334566889999985566666766778999999875 222222222
Q ss_pred ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee-eccCCCceEEEEecCC-CeEEEeeCC--CcE
Q 042883 420 HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV-FNGHKKAVSYVKFLSN-NELASASTD--SSL 495 (597)
Q Consensus 420 ~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~~~-~~l~s~~~d--~~v 495 (597)
.-..+.++++.+.++.++++-.. .+.|.++|+.. ..... +.........++++|. +.|+.+... +.|
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~-------~~~I~~~~~~g--~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCcCEEEEeecCCeEEEEECC-------CCEEEEEeCCC--CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence 22456788888646666666553 34589999874 33333 3323456789999986 766555543 678
Q ss_pred EEEEcCCCcceeeee-CCCCceeEEEEeecCCEEE-EEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEE
Q 042883 496 RLWDVKENLPLHTFR-GHTNEKNFVGLTVNNEYIA-CGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVC 573 (597)
Q Consensus 496 ~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~ 573 (597)
..+++.. .....+. ..-...+.+++++++..|+ +-+..+.|..+|+............. ......+++
T Consensus 146 ~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~---------~~~~P~gia 215 (316)
T 1ijq_A 146 KKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---------RLAHPFSLA 215 (316)
T ss_dssp EEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT---------TTSSEEEEE
T ss_pred EEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCC---------ccCCcEEEE
Confidence 8888763 3333332 2344678999998766554 44566799999987433222211100 123467788
Q ss_pred EccCCCeEEEecCcccEEEEEe
Q 042883 574 WKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 574 ~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+. .+.++++....+.|..++.
T Consensus 216 v~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 216 VF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EE-TTEEEEEETTTTEEEEEET
T ss_pred EE-CCEEEEEECCCCeEEEEeC
Confidence 75 3555666666777777764
No 313
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.79 E-value=4.3e-06 Score=81.05 Aligned_cols=208 Identities=8% Similarity=0.001 Sum_probs=132.6
Q ss_pred CCcEEEEEEcCCCCE-EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDEL-FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~-l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
...+.+++|++.+.. +++-...+.|..+++.+.. .............++++.+.+++++++-...+.|.+++
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCC-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 345789999975554 4555567889999887651 11111122345678888875667777777778999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-Ce
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~ 485 (597)
+........+...-....++++.|.++.++++-... .+.|..+++.. .....+ .........++++|+ +.
T Consensus 145 ~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~------~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 145 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRR 216 (349)
T ss_dssp TTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS------SCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTE
T ss_pred CCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC------CCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCE
Confidence 875443333333335678999998666666665422 24588888874 333333 223456789999986 65
Q ss_pred EE-EeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 486 LA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 486 l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
|+ +-+..+.|..+|+........+.........+++ ..+.++++....+.|..++..+++....+.
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 54 4456678999998754333333333445678888 456666666677889999876666554443
No 314
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.78 E-value=2.4e-06 Score=84.10 Aligned_cols=208 Identities=8% Similarity=-0.005 Sum_probs=132.8
Q ss_pred CCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
...+..++|++.+. ++++-...+.|..|++.+.. .............++++.+.++.++++-...+.|.+++
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 34578999997554 55555667889999987651 11111112234567888875666777777778899998
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-Ce
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~ 485 (597)
+........+...-....++++.|.++.++++-... .+.|..+++.. .....+ .........|+|+|+ +.
T Consensus 188 ~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~------~~~I~r~~~dG--~~~~~~~~~~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRR 259 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS------SCEEEEEETTS--CSCEEEECSSCSCEEEEEEEGGGTE
T ss_pred CCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC------CCEEEEEeCCC--CCcEEEEECCCCCeeeEEEeCCCCE
Confidence 865443333333335678999998666666665422 24588888874 333333 233456789999976 55
Q ss_pred E-EEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 486 L-ASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 486 l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
| ++-+..+.|..+|+........+.........+++ ..+.++++....+.|..++..+++....+.
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 260 MYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 5 45556678999998754333333333445678888 455666666678899999977776655544
No 315
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.76 E-value=1e-06 Score=86.73 Aligned_cols=219 Identities=8% Similarity=-0.020 Sum_probs=131.5
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCce-eEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKL-SCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE 418 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 418 (597)
++..+++++.++.|..+|..++.. .........+ ...... +..+++++.++.|..+|..+++.+..+.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~--------~W~~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTV--------AWQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCE--------EEEEECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE--------EEEEeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 455777888899999999987721 1111111111 111222 4577888889999999999998887765
Q ss_pred ecccee-----EEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCC-------ceEEEEec---CC
Q 042883 419 EHEKRA-----WSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKK-------AVSYVKFL---SN 483 (597)
Q Consensus 419 ~~~~~v-----~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~v~~v~~~---~~ 483 (597)
...... ...... ++ .++.++ .++.|..+|..+ ++.+-....... .+..+... .+
T Consensus 171 ~~~~~~~~~~~~~~~~~--~~-~v~~g~-------~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (376)
T 3q7m_A 171 LDMPSLSLRGESAPTTA--FG-AAVVGG-------DNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRLSDVDTTPVVVN 239 (376)
T ss_dssp CCC-----CCCCCCEEE--TT-EEEECC-------TTTEEEEEETTT-CCEEEEEECCC-----------CCCCCCEEET
T ss_pred CCCCceeecCCCCcEEE--CC-EEEEEc-------CCCEEEEEECCC-CcEEEEEecccCCCCcccccccccCCCcEEEC
Confidence 422111 111221 23 344444 345689999887 554443331110 00001111 24
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCc
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDD 563 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 563 (597)
+.+++++.++.+..+|..+++.+..... .....+. .++..|++++.++.|..||..+++.+.......
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-------- 307 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-------- 307 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTT--------
T ss_pred CEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccC--------
Confidence 7788888999999999999987766542 2233333 356778888889999999999998765543110
Q ss_pred CCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 564 MGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 564 ~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...+..... .+..|+.++.+|.|++||..
T Consensus 308 --~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 308 --HRLLTSPVL--YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp --TSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred --CCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence 111222222 24678888889999998864
No 316
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.74 E-value=4.2e-06 Score=74.81 Aligned_cols=184 Identities=10% Similarity=0.130 Sum_probs=118.9
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCC--CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVS--RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
.......+.|+. +.++.+.+.+ +.|+++|+.++ .......-.....+....+.++.+++..-.++.+.+
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg--------kv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG--------RILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC--------CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCC--------CEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 445677999986 5555555554 48999999987 222222222233333223324556666667899999
Q ss_pred EeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--CC---CceEEEEe
Q 042883 406 WDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--HK---KAVSYVKF 480 (597)
Q Consensus 406 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~---~~v~~v~~ 480 (597)
||..+.+.+.++.... .-+.+++. ++.++++-+ ++.|.++|..+ .+.+..+.- +. ..++.+.|
T Consensus 90 ~D~~tl~~~~ti~~~~-~Gwglt~d--g~~L~vSdg--------s~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 90 YDLATLTPRARFRYPG-EGWALTSD--DSHLYMSDG--------TAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EETTTTEEEEEEECSS-CCCEEEEC--SSCEEEECS--------SSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEE
T ss_pred EECCcCcEEEEEeCCC-CceEEeeC--CCEEEEECC--------CCeEEEEeCCC-CeEEEEEEEccCCcccccceeeEE
Confidence 9999999999886533 34566643 445555543 34599999987 555555542 11 34566776
Q ss_pred cCCCeEEEee-CCCcEEEEEcCCCcceeeeeCC-------------CCceeEEEEeecCCEEEEEeC
Q 042883 481 LSNNELASAS-TDSSLRLWDVKENLPLHTFRGH-------------TNEKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 481 ~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~-------------~~~v~~v~~s~~g~~l~~~~~ 533 (597)
. ++.+.+.. .+..|.+.|..+++.+..+... ....+.|+++|+++.|++.+.
T Consensus 158 ~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 158 V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6 45555544 5779999999999988887521 135688999998776655543
No 317
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.70 E-value=3.1e-07 Score=88.67 Aligned_cols=222 Identities=9% Similarity=0.052 Sum_probs=134.5
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
..+.++...++|. +..++.+ |..||.... ... ... ..........+. +..++.++.++.|..||..
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~-~~~-~~~------~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~ 125 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINPDGT-EKW-RFD------TKKAIVSDFTIF---EDILYVTSMDGHLYAINTD 125 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECCCGG-GGG-GSC------C-----CCEEEE---TTEEEEECTTSEEEEECTT
T ss_pred CcccceEEecCCc-EEEecCc--EEEECCCCc-EEE-EEE------CCCCcccCceEE---CCEEEEEecCCEEEEEcCC
Confidence 3456777777765 5555544 888875322 111 000 001112222232 4567778888999999988
Q ss_pred CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEe
Q 042883 410 TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASA 489 (597)
Q Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~ 489 (597)
++...........+.++...+ ++.+++ ++. ++.|..||.. +..+..+......+.++...+++.+..+
T Consensus 126 -g~~~~~~~~~~~~~~~~~~~~-~g~l~v-gt~-------~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~d~~g~l~v~ 193 (330)
T 3hxj_A 126 -GTEKWRFKTKKAIYATPIVSE-DGTIYV-GSN-------DNYLYAINPD--GTEKWRFKTNDAITSAASIGKDGTIYFG 193 (330)
T ss_dssp -SCEEEEEECSSCCCSCCEECT-TSCEEE-ECT-------TSEEEEECTT--SCEEEEEECSSCCCSCCEECTTCCEEEE
T ss_pred -CCEEEEEcCCCceeeeeEEcC-CCEEEE-EcC-------CCEEEEECCC--CCEeEEEecCCCceeeeEEcCCCEEEEE
Confidence 777666655555566666665 555544 332 3458999987 4444444444556677777777777777
Q ss_pred eCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcce
Q 042883 490 STDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFI 569 (597)
Q Consensus 490 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i 569 (597)
+ +.|..|| .+++.+..+......+.++..+++|.+ .+++.++.|..||. +++.+..+... ...+
T Consensus 194 t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~-----------~~~~ 257 (330)
T 3hxj_A 194 S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTG-----------KRIE 257 (330)
T ss_dssp S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECS-----------SCCC
T ss_pred e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCC-----------CCcc
Confidence 7 8899999 777777666655566788888888764 45667788888874 55554444322 2223
Q ss_pred EEEEEccCCCeEEEecCcccEEEEE
Q 042883 570 SAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 570 ~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
..+.+.+++ .|..++.+|.|..+|
T Consensus 258 ~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 258 SSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp SCCEECTTS-CEEEECTTCEEEEEC
T ss_pred ccceEcCCC-eEEEecCCCCEEEEC
Confidence 345555555 455666677777776
No 318
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.69 E-value=1.8e-06 Score=91.81 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=118.0
Q ss_pred EEEEecCCCCEEEEeeCCCc-------------------EEEEeCCCCeeeeEEeeccce---------e--EEEEeCCC
Q 042883 383 CLSWNKYTKNLIASSDYDGI-------------------VTIWDVTTSQSVMEYEEHEKR---------A--WSVDFSCT 432 (597)
Q Consensus 383 ~v~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~---------v--~~~~~~~~ 432 (597)
.++++| ..++++.+..++. |..||..+|+.+..+...... + .++.+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--- 314 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI--- 314 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE---
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc---
Confidence 577888 5678888877753 999999999988877542111 1 11222
Q ss_pred CCc---eEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC-------------------------------------
Q 042883 433 EPS---MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK------------------------------------- 472 (597)
Q Consensus 433 ~~~---~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------------------------------- 472 (597)
++. .++.++ .+|.++++|..+ ++.+....-..
T Consensus 315 ~G~~~~~v~~~~-------~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 315 DGKPRKVLMQAP-------KNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp TTEEEEEEEECC-------TTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred CCcEEEEEEEEC-------CCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 232 566665 456699999987 55542211000
Q ss_pred --CceEEEEecCC-CeEEEeeC---------------------------------------------CCcEEEEEcCCCc
Q 042883 473 --KAVSYVKFLSN-NELASAST---------------------------------------------DSSLRLWDVKENL 504 (597)
Q Consensus 473 --~~v~~v~~~~~-~~l~s~~~---------------------------------------------d~~v~iwd~~~~~ 504 (597)
..-..++++|+ +.+++... +|.|..||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 00123678888 76665421 3779999999999
Q ss_pred ceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 505 PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 505 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
.+-++..+.. ...-.+...|.++++|+.||.|+.||..+|+.+..+..+. ...-.-+.|..+|+.+++
T Consensus 467 ~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~----------~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 467 AAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS----------GVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----------CCCSCCEEEEETTEEEEE
T ss_pred eEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC----------CcccCceEEEECCEEEEE
Confidence 8888765432 3344677788899999999999999999999998877643 222233667778875443
No 319
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.67 E-value=3.5e-05 Score=76.10 Aligned_cols=225 Identities=5% Similarity=-0.085 Sum_probs=136.4
Q ss_pred EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC----eeeeEEe
Q 042883 343 LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS----QSVMEYE 418 (597)
Q Consensus 343 ~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~ 418 (597)
+|+.+. ...|+..++... ...........+.+|+|++.++.++++-...+.|+.+++... .....+.
T Consensus 85 ~ll~~~-~~~I~~i~l~~~--------~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRS--------EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp EEEEEE-TTEEEEECTTSC--------SCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred eeEEec-cceeEEEccCCc--------ceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence 344443 567888888764 222333455678899999855666666666788999998652 2223333
Q ss_pred eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeC--CCcE
Q 042883 419 EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAST--DSSL 495 (597)
Q Consensus 419 ~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~--d~~v 495 (597)
.....+..+++.+.++.++++-.. .+.|.+.|+.. ......+.........|+++|. +.|+.... .+.|
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~-------~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I 227 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 227 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETT-------TTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCE
T ss_pred CCCCCcccEEEEecCCceEEEECC-------CCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEE
Confidence 234567788888756666666553 34589998874 3323333333456789999996 76665542 3788
Q ss_pred EEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEE-eCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEE
Q 042883 496 RLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCW 574 (597)
Q Consensus 496 ~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~ 574 (597)
...++........+...-...+.|++++++..|+.+ ...+.|..+|+............ .......++++
T Consensus 228 ~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~---------~~l~~P~gl~v 298 (400)
T 3p5b_L 228 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---------KRLAHPFSLAV 298 (400)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS---------STTSSEEEEEE
T ss_pred EEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC---------CCCCCCEEEEE
Confidence 889887544333333334567899999876655544 55688999998654332222211 01233556776
Q ss_pred ccCCCeEEEecCcccEEEEE
Q 042883 575 KSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 575 ~~~~~~l~s~~~dg~v~iwd 594 (597)
. .+.++++....+.|..+|
T Consensus 299 ~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 299 F-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp E-TTEEEEEESSSCSEEEEE
T ss_pred e-CCEEEEecCCCCeEEEEE
Confidence 3 344555666667777776
No 320
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.66 E-value=5.8e-06 Score=74.47 Aligned_cols=182 Identities=10% Similarity=0.101 Sum_probs=119.0
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
.......+.|+ ++.++.+.+.+|.|+++|+.++. ...........--++++. ++.+++..-.++.+.+||
T Consensus 53 ~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-------v~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 53 TNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-------PVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSS-------CSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred CccccceEEEE-CCEEEEEcCCCCEEEEEECCCCc-------EEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence 34556789998 45666777778899999999871 111112222122335554 456666666789999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--CC---CceEEEEecC
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--HK---KAVSYVKFLS 482 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~---~~v~~v~~~~ 482 (597)
..+.+.+.++... ..-+.+++. +..++++.+ ++.|+++|..+ .+.+..+.- +. ..++.+.|.
T Consensus 123 ~~Tl~~~~ti~~~-~eGwGLt~D--g~~L~vSdG--------s~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 123 GMPPQRERTTRYS-GEGWGLCYW--NGKLVRSDG--------GTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp TTTTEEEEEEECS-SCCCCEEEE--TTEEEEECS--------SSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCcCcEEEEEeCC-CceeEEecC--CCEEEEECC--------CCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-
Confidence 9999999988653 334566643 444444432 34599999987 556655542 21 245677777
Q ss_pred CCeEEEee-CCCcEEEEEcCCCcceeeeeCC-------------CCceeEEEEeecCCEEEEEe
Q 042883 483 NNELASAS-TDSSLRLWDVKENLPLHTFRGH-------------TNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 483 ~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~-------------~~~v~~v~~s~~g~~l~~~~ 532 (597)
++.|.+.. .++.|.+.|..+++.+..+... ....+.|+|+|+++.|++.+
T Consensus 190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 55555555 5789999999999988877521 23568999999865544443
No 321
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.65 E-value=3.9e-07 Score=91.94 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=143.9
Q ss_pred CCCCEEEEeeC-CCcEEEEecccCccCCccCCCCceEecCCCceeEEEE-e-cCCCCEEEEee-----------------
Q 042883 339 RDDELFASAGV-SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSW-N-KYTKNLIASSD----------------- 398 (597)
Q Consensus 339 ~~~~~l~t~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-~-~~~~~~l~s~~----------------- 398 (597)
+||+++++... ++.|.+.|+.+.. ...+...+....+.++++ . | ++.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~------~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMK------CDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTE------EEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred cCCCEEEEEcCCCCEEEEEECCCce------EeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCccccccc
Confidence 37888777655 5679999998861 011123344456778887 4 7 566777663
Q ss_pred -CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCC-cc----------------------------c-
Q 042883 399 -YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDC-KV----------------------------G- 447 (597)
Q Consensus 399 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~~----------------------------~- 447 (597)
.++.+.++|..+.+....+.-.. ....++++| ++.++++++.+. .. |
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 35689999999998888876433 467788999 666666665443 10 1
Q ss_pred -CCCCeEEEEEccC--CCcceeeeccCCCceEEEEecCCC-e-EEEeeCCCcEEEEEcCCCc------------ceeeee
Q 042883 448 -SADHHIHYYDLRN--ISQPLHVFNGHKKAVSYVKFLSNN-E-LASASTDSSLRLWDVKENL------------PLHTFR 510 (597)
Q Consensus 448 -~~d~~i~i~d~~~--~~~~~~~~~~~~~~v~~v~~~~~~-~-l~s~~~d~~v~iwd~~~~~------------~~~~~~ 510 (597)
..-+.|.+.|.++ ....+..+.. .....++.++||+ + ++++..+.+|.++|+.+.+ .+..+.
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred eeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 0113488888875 2221334432 2345678999994 3 4555578899999998643 233333
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC----------CccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 511 GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI----------SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 511 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
-......++|+|+|..+++.-.|+.|.+||+.+ ...+..+..+.. .+|...-.++.++|||++
T Consensus 329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq------pGh~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ------PGHLKTVMGETLDATNDW 401 (595)
T ss_dssp -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC------EEEEEETTTTSTTCCSSE
T ss_pred -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc------cccceeccceEeCCCCCE
Confidence 234568899999994445566799999999987 333334433210 011222233456899999
Q ss_pred EEEec
Q 042883 581 MLTAN 585 (597)
Q Consensus 581 l~s~~ 585 (597)
|++..
T Consensus 402 l~~~N 406 (595)
T 1fwx_A 402 LVCLS 406 (595)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 98854
No 322
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=8e-06 Score=81.54 Aligned_cols=247 Identities=9% Similarity=0.103 Sum_probs=140.6
Q ss_pred CcEEEEEEcC-CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC-CC----cE
Q 042883 330 NIISSIEFDR-DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY-DG----IV 403 (597)
Q Consensus 330 ~~v~~i~~~~-~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~-dg----~i 403 (597)
.....++|+| ++..|+++...+.|+.+|+.+. .............+|+|++ +++.|+++.. ++ .+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--------~v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--------YVSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--------EEEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--------EEEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceE
Confidence 3567889998 4555665554588888988764 1112223445688999999 6674554443 22 23
Q ss_pred EEEeCCCCeee--eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-cCCCceEEEEe
Q 042883 404 TIWDVTTSQSV--MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-GHKKAVSYVKF 480 (597)
Q Consensus 404 ~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~ 480 (597)
.+++. .+... ..+.. .....+++++|.++.++++-.. ++.|..||... ........ +.......++|
T Consensus 208 ~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~-------~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 208 YILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWN-------AGQVFRYDFTT-QETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp EEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETT-------TTEEEEEETTT-TEEEEEEECSSSSCCEEEEE
T ss_pred EEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECC-------CCEEEEEECCC-CcEEEEEEcCCCCcceeEEE
Confidence 33443 33222 22322 3456788999866666666543 34589999875 32212221 12245789999
Q ss_pred cCC-C-eEEEeeCCCcEEEEEcCC--Ccc--eeeeeCC---------------CCcee-EEEEe--------ecCCEEEE
Q 042883 481 LSN-N-ELASASTDSSLRLWDVKE--NLP--LHTFRGH---------------TNEKN-FVGLT--------VNNEYIAC 530 (597)
Q Consensus 481 ~~~-~-~l~s~~~d~~v~iwd~~~--~~~--~~~~~~~---------------~~~v~-~v~~s--------~~g~~l~~ 530 (597)
+|+ + .+++....+.|..+|... +.. +..+.+. -.... .+++. ++|.++++
T Consensus 278 ~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva 357 (430)
T 3tc9_A 278 HPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC 357 (430)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE
Confidence 999 5 345555778899988653 211 1222211 11123 45553 34666666
Q ss_pred EeCCCcEEEEEccCCccccccccCC--CCCC----CcCcCCCcceEEEEEcc-CCCeEEEecCcccEEEEEec
Q 042883 531 GSETNEVFVYHKAISKPAASHRFGS--DADH----VDDDMGSYFISAVCWKS-DSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~----~~~~~h~~~i~~v~~~~-~~~~l~s~~~dg~v~iwd~~ 596 (597)
-..++.|+.++. .+........+. .... ......-....+|+++| ++.++++-..++.|+.++++
T Consensus 358 D~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 358 DRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 667788999883 443322221110 0000 00001133689999999 57777777788899998875
No 323
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.64 E-value=2.8e-05 Score=74.08 Aligned_cols=219 Identities=8% Similarity=-0.042 Sum_probs=134.0
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee-eEEeeccceeEEEE
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV-MEYEEHEKRAWSVD 428 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~ 428 (597)
...|+.+++.... ............+.+++|++.++.++++-...+.|..+++.++... ..+...-..+.+++
T Consensus 12 ~~~I~~i~l~~~~------~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGK------ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTT------SCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred cCeEEEEECCCCc------eEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 5678888887651 0111222223457789999866667777777789999998765322 22222234567888
Q ss_pred eCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeC--CCcEEEEEcCCCcc
Q 042883 429 FSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASAST--DSSLRLWDVKENLP 505 (597)
Q Consensus 429 ~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~--d~~v~iwd~~~~~~ 505 (597)
+.+.++.++++-.. .+.|.++++.. ......+.........++++|. +.|+.... .+.|..+++... .
T Consensus 86 vd~~~g~ly~~d~~-------~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~ 156 (318)
T 3sov_A 86 CDWLGEKLYWTDSE-------TNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-S 156 (318)
T ss_dssp EETTTTEEEEEETT-------TTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-S
T ss_pred EEcCCCeEEEEECC-------CCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-C
Confidence 88756666666553 34589999874 2222223334456789999987 77666553 577888887643 3
Q ss_pred eeee-eCCCCceeEEEEeecCCEE-EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 506 LHTF-RGHTNEKNFVGLTVNNEYI-ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 506 ~~~~-~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
...+ ...-...+.++|++++..| ++-+..+.|..+|+.......... + ......++++.. +.++.+
T Consensus 157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~----------~~~~P~glav~~-~~lywt 224 (318)
T 3sov_A 157 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-G----------SLPHPFALTLFE-DILYWT 224 (318)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S----------CCSCEEEEEEET-TEEEEE
T ss_pred eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-C----------CCCCceEEEEeC-CEEEEE
Confidence 3333 2233456899999965554 455567889999986433222111 1 133466777753 345555
Q ss_pred ecCcccEEEEEe
Q 042883 584 ANRKGAIKVLVL 595 (597)
Q Consensus 584 ~~~dg~v~iwd~ 595 (597)
....+.|..++.
T Consensus 225 d~~~~~V~~~~~ 236 (318)
T 3sov_A 225 DWSTHSILACNK 236 (318)
T ss_dssp ETTTTEEEEEET
T ss_pred ecCCCeEEEEEC
Confidence 556677777764
No 324
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.62 E-value=1.5e-05 Score=79.48 Aligned_cols=248 Identities=8% Similarity=0.063 Sum_probs=141.8
Q ss_pred CcEEEEEEcCC--CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC---C-cE
Q 042883 330 NIISSIEFDRD--DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD---G-IV 403 (597)
Q Consensus 330 ~~v~~i~~~~~--~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d---g-~i 403 (597)
.....++|+|+ +..|+.+...+.|+.++..++ .............+++|++ +++++++.... . .+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--------~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--------YVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGI 209 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--------EEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC--------EEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceE
Confidence 45678999984 344544444488999998655 1112222345688999999 56655554321 1 23
Q ss_pred EEEeCCCCee-eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-c-cCCCceEEEEe
Q 042883 404 TIWDVTTSQS-VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-N-GHKKAVSYVKF 480 (597)
Q Consensus 404 ~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~-~~~~~v~~v~~ 480 (597)
..++...+.. ...+. .......++++|.++.++++... ++.|+.+|..+ +.....+ . +.......++|
T Consensus 210 ~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~-------~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~ 280 (433)
T 4hw6_A 210 YLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYH-------HAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVW 280 (433)
T ss_dssp EEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTT-------CSEEEEECTTT-CCEEEEEEECSCCSSCEEEEE
T ss_pred EEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECC-------CCEEEEEECCC-CeEEEEEeccCCCCCcccEEE
Confidence 3333222111 11221 23456778898856666666543 44589998875 3331222 1 12223457999
Q ss_pred cCC-C-eEEEeeCCCcEEEEEcCC--Ccc--eeeeeCC---------------CCceeEEEE---------eecCCEEEE
Q 042883 481 LSN-N-ELASASTDSSLRLWDVKE--NLP--LHTFRGH---------------TNEKNFVGL---------TVNNEYIAC 530 (597)
Q Consensus 481 ~~~-~-~l~s~~~d~~v~iwd~~~--~~~--~~~~~~~---------------~~~v~~v~~---------s~~g~~l~~ 530 (597)
+|+ + .+++-...+.|+.+|... +.. ...+.+. -.....+++ .++|.++++
T Consensus 281 dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva 360 (433)
T 4hw6_A 281 HPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC 360 (433)
T ss_dssp CTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE
Confidence 999 5 345555678899988652 321 1122211 123567999 677877777
Q ss_pred EeCCCcEEEEEccCCccccccccCC--CCCCCcC----cCCCcceEEEEEc-cCCCeEEEecCcccEEEEEec
Q 042883 531 GSETNEVFVYHKAISKPAASHRFGS--DADHVDD----DMGSYFISAVCWK-SDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 531 ~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~----~~h~~~i~~v~~~-~~~~~l~s~~~dg~v~iwd~~ 596 (597)
-..++.|+.++. ++........+. ......+ ...-....+|+++ ++|.++++-..++.|+.++++
T Consensus 361 D~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 361 DRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 777889999985 443322211111 0000000 0113458899999 778888888888899998875
No 325
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.61 E-value=5.9e-05 Score=74.48 Aligned_cols=214 Identities=9% Similarity=0.015 Sum_probs=132.0
Q ss_pred CCCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
....+.+++|++.+. ++++-...+.|+.+++.+.... ...............++++.+.+++++++-...+.|.+.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 456788999998555 4455556788988988753100 001111112345677899987556677777778899999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-Ce
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 485 (597)
++........+...-..+.+|++.|.++.++.+-... .+.|...++.. ..........-.....|+++++ +.
T Consensus 187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~------~~~I~~~~~dG-~~~~~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS------SCCEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTE
T ss_pred eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC------CCEEEEEeCCC-CccEEEEECCCCceEEEEEEeCCCE
Confidence 9876544444443445688999998666666664321 24588888874 2222223333457899999987 66
Q ss_pred EEE-eeCCCcEEEEEcCCCcceeeeeC--CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 486 LAS-ASTDSSLRLWDVKENLPLHTFRG--HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 486 l~s-~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
|+. -+..+.|..+|+........... ......++++ ..+.++++....+.|..+|..+|+.+..+.
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 554 45667899999875433222222 2234456766 334556666677889999987776655443
No 326
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.59 E-value=5e-05 Score=72.44 Aligned_cols=209 Identities=9% Similarity=0.004 Sum_probs=128.9
Q ss_pred CCcEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccCCccCCCCceEe-cCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 329 ANIISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEM-PTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 329 ~~~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
...+.+++|++.+. ++++...++.|..+++.+.... ....... .....+.++++.+.+++++++-...+.|.++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~ 104 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence 44678999998654 4555556789999998762000 0111111 1224567889887456666776778899999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-C
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~ 484 (597)
++........+...-....++++.|.++.++++.... .+.|..+++.. .....+ ...-.....++++++ +
T Consensus 105 ~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------~~~I~~~~~dG--~~~~~~~~~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSG 176 (316)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTT
T ss_pred eCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC------CCeEEEEcCCC--CCeEEEEECCCCCceEEEEeccCC
Confidence 9875433333333345678999998666666664321 24588888763 333333 223456789999987 6
Q ss_pred eEE-EeeCCCcEEEEEcCCCcceeeee-C--CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 485 ELA-SASTDSSLRLWDVKENLPLHTFR-G--HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 485 ~l~-s~~~d~~v~iwd~~~~~~~~~~~-~--~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
.|+ +-+..+.|..+|+... ....+. . .......+++. .+.++++....+.|..++..+++.+..+
T Consensus 177 ~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 654 4456678999998743 333332 1 22345678884 4556666667789999998777655443
No 327
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.58 E-value=3.7e-05 Score=73.19 Aligned_cols=206 Identities=9% Similarity=0.010 Sum_probs=130.0
Q ss_pred cEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 331 IISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 331 ~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
.+.+++|++. +.++.+-...+.|..+++.+... ........-....++++.+.+++++++-...+.|.++++.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence 4678999985 45556666678899998876510 1111222234567888887566777776777899999986
Q ss_pred CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-CeE-
Q 042883 410 TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NEL- 486 (597)
Q Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~l- 486 (597)
.......+........++++.|.++.++.+-.. ..+.|..+++.. .....+ ...-.....++++++ +.|
T Consensus 110 G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~------~~~~I~r~~~dG--~~~~~~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG------EVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS------SSCEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC------CCCEEEEEEcCC--CCeEEEEECCCCCccEEEEeccCCEEE
Confidence 543332232334567899999855666665421 134588888763 333333 223356789999986 555
Q ss_pred EEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 487 ASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 487 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
++-+..+.|..+|+........+.+.......+++. .+.++++....+.|..++..+++....+
T Consensus 182 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 455567889999987533322223234455678875 3455566667789999998777654443
No 328
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.57 E-value=1.9e-06 Score=87.01 Aligned_cols=190 Identities=6% Similarity=-0.052 Sum_probs=125.1
Q ss_pred CCEEEEe-eCCCcEEEEeCCCCeeeeEEee-ccceeEEEEe-C-CCCCceEEeecC-------CCcc----cCCCCeEEE
Q 042883 391 KNLIASS-DYDGIVTIWDVTTSQSVMEYEE-HEKRAWSVDF-S-CTEPSMLVSGSD-------DCKV----GSADHHIHY 455 (597)
Q Consensus 391 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~s~~~-------d~~~----~~~d~~i~i 455 (597)
++++++. ..++.|.+.|+.+.+....+.- ....+..+++ . | ++.++++++. ||.. .-.++.+.+
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4555554 4466799999999988775542 2345788887 4 7 5555555531 2221 223567999
Q ss_pred EEccCCCcceeeeccCCCceEEEEecCC-CeEEEeeCC--------------------------------------CcEE
Q 042883 456 YDLRNISQPLHVFNGHKKAVSYVKFLSN-NELASASTD--------------------------------------SSLR 496 (597)
Q Consensus 456 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~d--------------------------------------~~v~ 496 (597)
+|..+ .+.+..+.-.. ....++++|+ +++++.+.+ +.|.
T Consensus 180 ID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADK-WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTT-TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCC-CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99987 55555554222 3456778888 666665544 2477
Q ss_pred EEEcCC--Ccc-eeeeeCCCCceeEEEEeecCCEEEEEe-CCCcEEEEEccCCcc------------ccccccCCCCCCC
Q 042883 497 LWDVKE--NLP-LHTFRGHTNEKNFVGLTVNNEYIACGS-ETNEVFVYHKAISKP------------AASHRFGSDADHV 560 (597)
Q Consensus 497 iwd~~~--~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~------------~~~~~~~~~~~~~ 560 (597)
|.|.++ ++. +..+.. .....++.++|||+++++++ .+++|.++|+.+.+. ......
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v------- 329 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL------- 329 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-------
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-------
Confidence 788776 545 455543 23456799999999877665 578999999986531 222222
Q ss_pred cCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
......++|+|+|..+++.--|+.|.+||++
T Consensus 330 -----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 330 -----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp -----CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred -----CCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 4568999999999445566789999999975
No 329
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.55 E-value=5.9e-05 Score=82.19 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=149.1
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...|.++..++++.+.+ |+.++-+.+|+..+...............-....|.++...+ ++. |..|+.+ .|.+||.
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEET
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcC
Confidence 45788888888776444 554445888887654111000000000001235688888876 444 5555555 6889998
Q ss_pred CCCeeeeEEee-------ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-------CCCc
Q 042883 409 TTSQSVMEYEE-------HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-------HKKA 474 (597)
Q Consensus 409 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~ 474 (597)
.++........ ....|.++...+ ++.+.+... ++-|..|+... . ....+.. ....
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lWigt~--------~~Gl~~~~~~~-~-~~~~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMWLGTY--------FGGLNYYHPIR-N-RFKNIRNIPYKNSLSDNV 358 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEEEEES--------SSCEEEECGGG-G-SSEEECCCTTSSSCSCSS
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEEEEEC--------CCCeEEeCCCc-c-cceEEcCCCCCCCCCCCe
Confidence 77654332211 235699999887 566555432 22388888764 2 2222211 2356
Q ss_pred eEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeC--------CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 475 VSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRG--------HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 475 v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
|.++...+++.|..|+.++-|..||..++........ ....|.++..+++|..|.+|+.++-|.+||..+++
T Consensus 359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 8999888888888999988899999876654322211 13568888888888856677777779999988776
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
......... ..+...|.++..+++|.+.+... +| |.+||.
T Consensus 439 ~~~~~~~~~-------~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~ 478 (795)
T 4a2l_A 439 VENFNQRNS-------QLVNENVYAILPDGEGNLWLGTL-SA-LVRFNP 478 (795)
T ss_dssp EEEECTTTS-------CCSCSCEEEEEECSSSCEEEEES-SC-EEEEET
T ss_pred EEEeecCCC-------CcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeC
Confidence 433221100 01255799999998888666554 44 677764
No 330
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.54 E-value=4.9e-05 Score=68.99 Aligned_cols=204 Identities=8% Similarity=0.105 Sum_probs=128.3
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee-ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
...+.+++|+|+++.++++...++.|...|.. ++.+..+.- -....-.|++.+ ++.++++.-. ++.+.++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~-------~~~l~~~ 96 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDER-------DYAIYVI 96 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETT-------TTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECC-------CCcEEEE
Confidence 35799999999655566667788899999987 777777632 225678899987 6666666443 3448888
Q ss_pred EccCCCc--ceeeec------cCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCC---Ccceeeee-------CCCCcee
Q 042883 457 DLRNISQ--PLHVFN------GHKKAVSYVKFLSN-NELASASTDSSLRLWDVKE---NLPLHTFR-------GHTNEKN 517 (597)
Q Consensus 457 d~~~~~~--~~~~~~------~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~---~~~~~~~~-------~~~~~v~ 517 (597)
++...+. .+.... ..+...-.++|+|. +.|+++.......||.+.. ...+..+. .+...+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8765332 112211 23456789999998 6777776655556665541 11122221 1234568
Q ss_pred EEEEeec-CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 518 FVGLTVN-NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 518 ~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+++++|. |.+++.....+.|.++|.. ++.+..+.+....... ..--...-+|+|+++|..+++ +..+.+++|.
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 9999997 5566666677889999965 5566666554210000 000235789999999985555 5556555554
No 331
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.54 E-value=2e-05 Score=84.95 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=109.5
Q ss_pred cEEEEEEc-CCCCEEEEeeC-C----CcEEEEecccC-ccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC---
Q 042883 331 IISSIEFD-RDDELFASAGV-S----RRIKIFEFSSV-VNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD--- 400 (597)
Q Consensus 331 ~v~~i~~~-~~~~~l~t~~~-d----~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d--- 400 (597)
.+...+|| |||++||.+.. + ..|+++|+.++ ... .... ......++|+| +++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----~~~~-----~~~~~~~~Wsp-Dg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----ADKV-----SGTNGEIVWGP-DHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----CCCE-----EEECSCCEECS-STTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----Cccc-----cCceeeEEEec-CCCEEEEEEECCCC
Confidence 67889999 99998886543 2 24999999875 210 1111 11235688999 55555544444
Q ss_pred --CcEEEEeCCCCee--eeEEe-eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcce--eee-ccCC
Q 042883 401 --GIVTIWDVTTSQS--VMEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPL--HVF-NGHK 472 (597)
Q Consensus 401 --g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~--~~~-~~~~ 472 (597)
..|+++++.++.. ...+. .......++.|+| ++.+|+..+.++ ....|+++|+.++.... ..+ ....
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeecCCC
Confidence 2588888877642 22232 2223456789999 666555444322 24568999998632122 333 3344
Q ss_pred CceEEEEecCCCeEEE-eeCC----CcEEEEEcCCCcceee-eeCCCCceeEEEEeecCCE-EEEEeCCCc--EEEEEc
Q 042883 473 KAVSYVKFLSNNELAS-ASTD----SSLRLWDVKENLPLHT-FRGHTNEKNFVGLTVNNEY-IACGSETNE--VFVYHK 542 (597)
Q Consensus 473 ~~v~~v~~~~~~~l~s-~~~d----~~v~iwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~-l~~~~~d~~--i~iwd~ 542 (597)
....++.|+.++.|+. ...+ ..|..+|+.++..... +..+...+.--.+++++.. +++...++. |.++++
T Consensus 320 ~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 320 GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 5667777666655444 3333 2566677664222223 3333333222234445554 455666775 555564
No 332
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.51 E-value=6.7e-05 Score=68.09 Aligned_cols=201 Identities=11% Similarity=0.091 Sum_probs=122.1
Q ss_pred cCCCCcEEEEEEcCCCCEEE-EeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEE
Q 042883 326 FHAANIISSIEFDRDDELFA-SAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVT 404 (597)
Q Consensus 326 ~~~~~~v~~i~~~~~~~~l~-t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~ 404 (597)
.+-.+.+..++|+|++..|+ +...++.|...|.... .............-+|++.+ ++.++++.-.++.+.
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~-------v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGD-------LIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIY 94 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCC-------EEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCC-------EEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEE
Confidence 34556799999999776555 4666788888887622 01111123335677889987 566666665678899
Q ss_pred EEeCCCCee---eeEEe------eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec------
Q 042883 405 IWDVTTSQS---VMEYE------EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN------ 469 (597)
Q Consensus 405 iwd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~------ 469 (597)
++++..... +.... ..+.....++|+|.++.++++.-.+. ..|+.|+-......+..+.
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p------~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP------IEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS------EEEEEEESTTCSSCCEEEECHHHHH
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC------ceEEEEcccccCCceeeecchhhcc
Confidence 998765432 22221 12345689999995555666544332 1355555111111222221
Q ss_pred -cCCCceEEEEecCC-Ce-EEEeeCCCcEEEEEcCCCcceeeeeCCC---------CceeEEEEeecCCEEEEEeCCCcE
Q 042883 470 -GHKKAVSYVKFLSN-NE-LASASTDSSLRLWDVKENLPLHTFRGHT---------NEKNFVGLTVNNEYIACGSETNEV 537 (597)
Q Consensus 470 -~~~~~v~~v~~~~~-~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~v~~s~~g~~l~~~~~d~~i 537 (597)
.+...+.+++++|. +. ++.....+.+.++|.. ++++..+.-.. .....|+|+++|+++++ +..+.+
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~ 246 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRF 246 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEE
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceE
Confidence 12346789999998 55 5556667788899966 55655554221 25578999999985555 666777
Q ss_pred EEEEc
Q 042883 538 FVYHK 542 (597)
Q Consensus 538 ~iwd~ 542 (597)
+.|..
T Consensus 247 y~f~~ 251 (255)
T 3qqz_A 247 YRFTP 251 (255)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77754
No 333
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.50 E-value=9.7e-05 Score=80.47 Aligned_cols=238 Identities=9% Similarity=0.037 Sum_probs=146.6
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceE-ecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVE-MPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
...|.++..+++|. |..|+.++-|..|+..+..-........... .-....|.++...+ ++..|..|+.++.|.+||
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEe
Confidence 45799999998886 5557777779999876541100000000000 01235688888876 565477788778899999
Q ss_pred CCCCeeeeEEe----eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc-------CCCceE
Q 042883 408 VTTSQSVMEYE----EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-------HKKAVS 476 (597)
Q Consensus 408 ~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~~v~ 476 (597)
..+++...... .....|.++...+ ++.+.+... +| +.+||..+ +. ...+.. ....|.
T Consensus 434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~-~G--------l~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 434 RNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL-SA--------LVRFNPEQ-RS-FTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp TTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES-SC--------EEEEETTT-TE-EEECCBCTTCCBCCCCCEE
T ss_pred CCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec-Cc--------eeEEeCCC-Ce-EEEccccccccccCCceEE
Confidence 88765433211 1235688998887 566555443 33 78999875 32 222211 235788
Q ss_pred EEEecCCCeEEEeeCCCcEEEEEcCCCcceeeee-------CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc
Q 042883 477 YVKFLSNNELASASTDSSLRLWDVKENLPLHTFR-------GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA 549 (597)
Q Consensus 477 ~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 549 (597)
++...+++.|..|+. +-|..||..+++. .+. .....|.++..+++|.+.+++ .+ -|..||..+++...
T Consensus 502 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~ 576 (795)
T 4a2l_A 502 TLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKR 576 (795)
T ss_dssp EEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEE
Confidence 998888887877777 5688899876654 222 123467888888888865544 34 58889977664332
Q ss_pred ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 550 SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 550 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
..... .-....|.++..+++|.+.+++ .+| |..||.
T Consensus 577 ~~~~~--------gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~~ 612 (795)
T 4a2l_A 577 YNTTN--------GLPNNVVYGILEDSFGRLWLST-NRG-ISCFNP 612 (795)
T ss_dssp ECGGG--------TCSCSCEEEEEECTTSCEEEEE-TTE-EEEEET
T ss_pred eCCCC--------CCchhheEEEEECCCCCEEEEc-CCc-eEEEcC
Confidence 11100 0014468899999988877665 344 555553
No 334
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.49 E-value=1.7e-06 Score=83.85 Aligned_cols=195 Identities=9% Similarity=-0.034 Sum_probs=120.4
Q ss_pred EEEEEEcCCCCEEEEeeC--CCcEEE--EecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 332 ISSIEFDRDDELFASAGV--SRRIKI--FEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~--d~~v~i--w~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
...++|+|||++++++.. +..|.+ +|..+. ....-... +...|++...+++.+.||.+.+.|
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv-----------~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----------QLTKSASC---FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE-----------EEEECSSC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc-----------eEEECCCc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence 457899999999998864 456888 887651 00110111 123344556677777889998889
Q ss_pred CCC-----CeeeeE----EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC-cceeeecc-------
Q 042883 408 VTT-----SQSVME----YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS-QPLHVFNG------- 470 (597)
Q Consensus 408 ~~~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~-~~~~~~~~------- 470 (597)
+.+ ++.... +.-...+. . .+.++.++++.. + .+.+.|+.... ..+..+.-
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~--~-------~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA--S-------SILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS--S-------CCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred CccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC--C-------EEEEEECCCCcceEEEEEEeccccccc
Confidence 876 433211 11112222 2 443444444432 3 38889986421 11221110
Q ss_pred CC---CceEEEEecCC-CeEEEeeC---------CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCC-EEEEEe-CCC
Q 042883 471 HK---KAVSYVKFLSN-NELASAST---------DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNE-YIACGS-ETN 535 (597)
Q Consensus 471 ~~---~~v~~v~~~~~-~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~-~d~ 535 (597)
+. .....++++|+ ++++++.. ++.+.+||+.+++.+..+.... ....++|+|||+ .+++.. .++
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTT
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCC
Confidence 11 11122678999 66665432 2356699999999988887433 578999999998 456666 589
Q ss_pred cEEEEEccCCccccccccC
Q 042883 536 EVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 536 ~i~iwd~~~~~~~~~~~~~ 554 (597)
.|.++|+.+++.+..+..+
T Consensus 338 ~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 338 VLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEEESSSCEEEEECCCC
T ss_pred eEEEEECCCCcEEEEEECC
Confidence 9999999999999888763
No 335
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=0.00012 Score=73.09 Aligned_cols=246 Identities=8% Similarity=0.012 Sum_probs=142.5
Q ss_pred cEEEEEEcC-CCCEE-EEeeCCCcEEEEecccCccCCccCCCCceEec----CCCceeEEEE-------ecCCCCEEEEe
Q 042883 331 IISSIEFDR-DDELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMP----TRSKLSCLSW-------NKYTKNLIASS 397 (597)
Q Consensus 331 ~v~~i~~~~-~~~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~----~~~~i~~v~~-------~~~~~~~l~s~ 397 (597)
....|+|+| +...| ++....+.|++.|+... ....... ....+..|+| ++ ++..|+++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--------MLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT--------EEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC--------EEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEE
Confidence 577999998 34444 44444567888887765 1111111 1235889999 98 56655555
Q ss_pred eCCC-------cEEEEeCCC-Ceee-----eEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc-----
Q 042883 398 DYDG-------IVTIWDVTT-SQSV-----MEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR----- 459 (597)
Q Consensus 398 ~~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~----- 459 (597)
...+ .|.+++... +... ..+.. ......++++|.++.++++... ++.|+.||+.
T Consensus 211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~-------~g~V~r~d~~~~~~~ 282 (496)
T 3kya_A 211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYE-------KGQVFRLDLVDYFKT 282 (496)
T ss_dssp ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETT-------TTEEEEECHHHHHHH
T ss_pred eCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECC-------CCEEEEEeccccccc
Confidence 4443 266665333 2221 23322 2345688999966676666653 4459999987
Q ss_pred --CCCcc-----------eee-ec-cCCCceEEEEecCC-Ce-EEEeeCCCcEEEEEcCC--Ccc--eeeeeCC---C--
Q 042883 460 --NISQP-----------LHV-FN-GHKKAVSYVKFLSN-NE-LASASTDSSLRLWDVKE--NLP--LHTFRGH---T-- 513 (597)
Q Consensus 460 --~~~~~-----------~~~-~~-~~~~~v~~v~~~~~-~~-l~s~~~d~~v~iwd~~~--~~~--~~~~~~~---~-- 513 (597)
+ +.. ... +. +.......++|+|+ +. +++-+..+.|+.+|... +.. ...+-+. .
T Consensus 283 ~~t-g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~ 361 (496)
T 3kya_A 283 IKN-GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGY 361 (496)
T ss_dssp HHT-TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCC
T ss_pred ccC-ceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcc
Confidence 3 222 111 11 22345689999999 53 55556778898866543 221 1222211 0
Q ss_pred ----------Ccee-EEEEe-------ecCCEEEEEeCCCcEEEEEccCCccccccccC-CC-------C-CCC----cC
Q 042883 514 ----------NEKN-FVGLT-------VNNEYIACGSETNEVFVYHKAISKPAASHRFG-SD-------A-DHV----DD 562 (597)
Q Consensus 514 ----------~~v~-~v~~s-------~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~-------~-~~~----~~ 562 (597)
.... .++.. ++|.++++-..+++|+.++ .++. +.++.-. .. . ... ..
T Consensus 362 ~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~ 439 (496)
T 3kya_A 362 RDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLRE 439 (496)
T ss_dssp BCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTT
T ss_pred cCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchh
Confidence 1234 45554 4577777777889999998 4453 2222211 00 0 000 00
Q ss_pred cCCCcceEEEEEccC-CCeEEEecCcccEEEEEec
Q 042883 563 DMGSYFISAVCWKSD-SPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 563 ~~h~~~i~~v~~~~~-~~~l~s~~~dg~v~iwd~~ 596 (597)
...-....+|+++++ |.++++-..++.|+.++++
T Consensus 440 ~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 440 VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp TCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred hhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 112456889999996 8888888889999999875
No 336
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.45 E-value=0.00014 Score=77.82 Aligned_cols=218 Identities=5% Similarity=-0.093 Sum_probs=130.2
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC----eeeeEEeeccceeE
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS----QSVMEYEEHEKRAW 425 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~ 425 (597)
...|+..++... ...........+.+|+|++.++.++++-...+.|+.+++... .....+......+.
T Consensus 403 ~~~Ir~i~l~~~--------~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 403 RHEVRKMTLDRS--------EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp BSSEEEECTTSC--------CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccceeEeeccCC--------cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 456777776654 222333445678899999855666667666788999998653 22333332345677
Q ss_pred EEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-CeEEEeeC--CCcEEEEEcC
Q 042883 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NELASAST--DSSLRLWDVK 501 (597)
Q Consensus 426 ~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~--d~~v~iwd~~ 501 (597)
+|++.+.+++++++-.. .+.|.+.++.. .....+ .........|+++|. +.|+.... .+.|...++.
T Consensus 475 GLAvD~~~~~LY~tD~~-------~~~I~v~~ldG--~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSV-------LGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp EEEEETTTTEEEEEETT-------TTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eeeeeecCCcEEEEecC-------CCeEEEEeCCC--CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 88888755666666553 44599999874 333333 334456889999997 77666553 2678888887
Q ss_pred CCcceeeeeCCCCceeEEEEeecCCEEEE-EeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 502 ENLPLHTFRGHTNEKNFVGLTVNNEYIAC-GSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 502 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
.......+.......+.|++++.+..|+. -...+.|..+++............. .-....+|++.. +.+
T Consensus 546 G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~---------~l~~P~glav~~-~~l 615 (791)
T 3m0c_C 546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---------RLAHPFSLAVFE-DKV 615 (791)
T ss_dssp SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT---------TTSSEEEEEEET-TEE
T ss_pred CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC---------ccCCCCEEEEeC-CEE
Confidence 54433333333456789999977555544 4556789999986544333222110 022345666642 344
Q ss_pred EEEecCcccEEEEE
Q 042883 581 MLTANRKGAIKVLV 594 (597)
Q Consensus 581 l~s~~~dg~v~iwd 594 (597)
+++-...+.|...|
T Consensus 616 YwtD~~~~~I~~~d 629 (791)
T 3m0c_C 616 FWTDIINEAIFSAN 629 (791)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEe
Confidence 44555556665554
No 337
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=1.2e-05 Score=85.22 Aligned_cols=237 Identities=7% Similarity=0.014 Sum_probs=137.3
Q ss_pred CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-EEEecCCCCEEEEeeC------CCcEEEEeCCCCee
Q 042883 341 DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-LSWNKYTKNLIASSDY------DGIVTIWDVTTSQS 413 (597)
Q Consensus 341 ~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~ 413 (597)
+..+++++.|+.|..+|..++........... .....+.+ ..+. + ..++++.. +|.|..||..+|+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~---~~~~~~~~~P~v~--~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP---AKPYSITGAPRVV--K-GKVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCT---TSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCC---CCcceecCCCEEE--C-CEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 45678888899999999988722111000000 00001110 1111 2 34555543 58999999999998
Q ss_pred eeEEeecc---c----------------------------eeEEEEeCCCCCceEEeecCCCcc------------cCCC
Q 042883 414 VMEYEEHE---K----------------------------RAWSVDFSCTEPSMLVSGSDDCKV------------GSAD 450 (597)
Q Consensus 414 ~~~~~~~~---~----------------------------~v~~~~~~~~~~~~l~s~~~d~~~------------~~~d 450 (597)
+..+.... . ....+++.| ...+++.+..++.. ....
T Consensus 191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 87774210 0 011356776 44555555544320 0011
Q ss_pred CeEEEEEccCCCcceeeecc--CC-------CceEEEEecCCC----eEEEeeCCCcEEEEEcCCCcceeeeeCCC----
Q 042883 451 HHIHYYDLRNISQPLHVFNG--HK-------KAVSYVKFLSNN----ELASASTDSSLRLWDVKENLPLHTFRGHT---- 513 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~~--~~-------~~v~~v~~~~~~----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---- 513 (597)
+.|.-+|..+ ++.+-.+.. |. .++....+..++ .++.++.+|.++++|..+|+.+.......
T Consensus 270 ~~v~AlD~~t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 270 SSILAIRPDT-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeEEEEcCCC-CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 3588999887 555544432 22 122222222243 48899999999999999998874332111
Q ss_pred -------C-c------------------------eeEEEEeecCCEEEEE------------------------------
Q 042883 514 -------N-E------------------------KNFVGLTVNNEYIACG------------------------------ 531 (597)
Q Consensus 514 -------~-~------------------------v~~v~~s~~g~~l~~~------------------------------ 531 (597)
+ + -..++++|+..++++.
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 0 0 0126788876655541
Q ss_pred ------eCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 532 ------SETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 532 ------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
..+|.|..||+.+++.+.....+ .++....+...+.+++.++.||.|+.||..+
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYP------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCC------------CCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 12478999999999988766542 2233334455678899999999999999753
No 338
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.42 E-value=1.6e-05 Score=76.19 Aligned_cols=185 Identities=9% Similarity=0.080 Sum_probs=113.6
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEee--------------------ccceeEEEEeCCCCCceEE
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEE--------------------HEKRAWSVDFSCTEPSMLV 438 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~l~ 438 (597)
....+++|.+ ++++++++..++.|..||..++... .+.. ....+..+++.+.++.+++
T Consensus 19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3456788998 6777888888999999998765432 2211 1135788999863556665
Q ss_pred eecCCCcccCCCCeEEEEEccCCCcceeeecc-----CCCceEEEEecC-CCeEEEeeC------------------CCc
Q 042883 439 SGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-----HKKAVSYVKFLS-NNELASAST------------------DSS 494 (597)
Q Consensus 439 s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~v~~~~-~~~l~s~~~------------------d~~ 494 (597)
+... +.|..+|... +. +..+.. .......+++.+ ++.|+.+.. ++.
T Consensus 97 ~d~~--------~~i~~~d~~~-g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 97 VDCY--------YHLSVVGSEG-GH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp EETT--------TEEEEECTTC-EE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred EECC--------CCEEEEeCCC-CE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 5432 2278888663 22 222211 123468899999 765555432 367
Q ss_pred EEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEE-eCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEE
Q 042883 495 LRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACG-SETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVC 573 (597)
Q Consensus 495 v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~ 573 (597)
|..||..+++...... .....+.++|+++|++|+++ +.++.|.+|++.....-....+.. ..+ ...++
T Consensus 167 v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---------~~g-P~gi~ 235 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---------IPN-PGNIK 235 (322)
T ss_dssp EEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---------CSS-EEEEE
T ss_pred EEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---------CCC-CCCeE
Confidence 8889987665332222 12345789999999866555 566899999987532111000000 022 77899
Q ss_pred EccCCCeEEEecC
Q 042883 574 WKSDSPTMLTANR 586 (597)
Q Consensus 574 ~~~~~~~l~s~~~ 586 (597)
++++|.++++...
T Consensus 236 ~d~~G~l~va~~~ 248 (322)
T 2fp8_A 236 RNADGHFWVSSSE 248 (322)
T ss_dssp ECTTSCEEEEEEE
T ss_pred ECCCCCEEEEecC
Confidence 9999987776543
No 339
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.42 E-value=8.1e-06 Score=86.69 Aligned_cols=240 Identities=7% Similarity=0.014 Sum_probs=129.8
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------cEEEEecccCccCCccCCCCceEe--cCCCceeEEEEecCCCCEEEEeeC
Q 042883 334 SIEFDR-DDELFASAGVSR-----------RIKIFEFSSVVNEPRDVHYPMVEM--PTRSKLSCLSWNKYTKNLIASSDY 399 (597)
Q Consensus 334 ~i~~~~-~~~~l~t~~~d~-----------~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~~l~s~~~ 399 (597)
++++.+ ++++++.|+.+. .+.+||+.+.... ..... .+.....++++.+ ++.++++|+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~------~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~ 262 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS------DRTVTVTKHDMFCPGISMDG-NGQIVVTGGN 262 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC------CCEEEECSCCCSSCEEEECT-TSCEEEECSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE------eCcccCCCCCCccccccCCC-CCCEEEeCCC
Confidence 556677 888888887542 5788988776211 11111 1222334566766 6888888884
Q ss_pred -CCcEEEEeCCCCeeeeEEeeccce-eEEEEeCCCCCceEEeec-CCCcccCCCCeEEEEEccCCCcceeeecc------
Q 042883 400 -DGIVTIWDVTTSQSVMEYEEHEKR-AWSVDFSCTEPSMLVSGS-DDCKVGSADHHIHYYDLRNISQPLHVFNG------ 470 (597)
Q Consensus 400 -dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~-~d~~~~~~d~~i~i~d~~~~~~~~~~~~~------ 470 (597)
++.+.+||..++.....-..+... -.++++.+ ++.+++.|| .++. .....+.+||..+. . -..+..
T Consensus 263 ~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~--~~~~~~e~yd~~t~-~-W~~~~~~~~~p~ 337 (656)
T 1k3i_A 263 DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGG--VFEKNGEVYSPSSK-T-WTSLPNAKVNPM 337 (656)
T ss_dssp STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSS--SCCCCEEEEETTTT-E-EEEETTSCSGGG
T ss_pred CCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCC--cccccceEeCCCCC-c-ceeCCCcccccc
Confidence 458999998876544322111111 22345555 778888887 3432 12356899999762 2 111100
Q ss_pred CCCceEEEEecCC-CeEEEeeCC---------CcEEEEEcCCCcceeeeeCCC---------CceeEEEEee-cCCEEEE
Q 042883 471 HKKAVSYVKFLSN-NELASASTD---------SSLRLWDVKENLPLHTFRGHT---------NEKNFVGLTV-NNEYIAC 530 (597)
Q Consensus 471 ~~~~v~~v~~~~~-~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~~~---------~~v~~v~~s~-~g~~l~~ 530 (597)
....-. ..+..+ ..++.|+.+ ..+..||..+........... ..-..+.|.. ++++++.
T Consensus 338 ~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 338 LTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp CCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 000000 111122 334445444 356788887765333222111 1123444443 6778888
Q ss_pred EeCCC-----------cEEEEEccCCcccccc--ccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc----------
Q 042883 531 GSETN-----------EVFVYHKAISKPAASH--RFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK---------- 587 (597)
Q Consensus 531 ~~~d~-----------~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d---------- 587 (597)
||.++ .|.+||..+..-.... .... ...-.+.+..|+|++++.||.+
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~----------~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF----------ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS----------CCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC----------CcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 87543 6778887765543222 1110 1112234566899999998854
Q ss_pred -ccEEEEEec
Q 042883 588 -GAIKVLVLA 596 (597)
Q Consensus 588 -g~v~iwd~~ 596 (597)
..+.+||..
T Consensus 487 ~~~v~~ydp~ 496 (656)
T 1k3i_A 487 VFTPEIYVPE 496 (656)
T ss_dssp CCCCEEEEGG
T ss_pred ccceEEEcCC
Confidence 458888864
No 340
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.40 E-value=2.6e-05 Score=80.84 Aligned_cols=237 Identities=9% Similarity=-0.019 Sum_probs=133.0
Q ss_pred CCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-EEEecCCCCEEEEeeC------CCcEEEEeCCCCee
Q 042883 341 DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-LSWNKYTKNLIASSDY------DGIVTIWDVTTSQS 413 (597)
Q Consensus 341 ~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~ 413 (597)
+..+++++.|+.|..+|..++.......... ......+.+ .... + ..+++++. +|.|..+|..+|+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~---~~~~~~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 188 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD---PKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---GGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC---CCccceeccCCEEE--C-CEEEEEecCCccCCCCEEEEEECCCCcE
Confidence 4567778889999999988772211100000 000001111 1111 3 35555554 78999999999998
Q ss_pred eeEEeeccce-------------------------------------e-EEEEeCCCCCceEEeecCCC----cc--c--
Q 042883 414 VMEYEEHEKR-------------------------------------A-WSVDFSCTEPSMLVSGSDDC----KV--G-- 447 (597)
Q Consensus 414 ~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d~----~~--~-- 447 (597)
+..+...... + ..+++.+..+.+++..+... .. +
T Consensus 189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 8776532111 0 12445553333333322100 00 0
Q ss_pred CCCCeEEEEEccCCCcceeeecc--CC--------CceEEEEecCCC----eEEEeeCCCcEEEEEcCCCcceeeeeCCC
Q 042883 448 SADHHIHYYDLRNISQPLHVFNG--HK--------KAVSYVKFLSNN----ELASASTDSSLRLWDVKENLPLHTFRGHT 513 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~~~~~~~~~--~~--------~~v~~v~~~~~~----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 513 (597)
...+.|..+|..+ ++.+-.+.. |. .++. +....++ .++.++.+|.++++|..+++.+..+....
T Consensus 269 ~y~~~v~Ald~~t-G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~ 346 (571)
T 2ad6_A 269 KWTMTIWGRDLDT-GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp TTTTEEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred eeEEEEEEEecCC-CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence 0124689999987 555444432 21 1111 2222344 36778889999999999998876654211
Q ss_pred -------------Cce--------------------------eEEEEeecCCEEEEEe----------------------
Q 042883 514 -------------NEK--------------------------NFVGLTVNNEYIACGS---------------------- 532 (597)
Q Consensus 514 -------------~~v--------------------------~~v~~s~~g~~l~~~~---------------------- 532 (597)
.++ ..++++|+..+|++..
T Consensus 347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence 011 2367888877666543
Q ss_pred ---------------CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 533 ---------------ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 533 ---------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+|.|..||..+++.+.....+. .+.+..+...+..++.++.||.|+.||..+
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~------------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF------------AAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS------------CCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC------------CccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 34789999999998877665431 122222233456777789999999998653
No 341
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.40 E-value=0.00012 Score=78.18 Aligned_cols=212 Identities=9% Similarity=0.015 Sum_probs=128.7
Q ss_pred CCCcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iw 406 (597)
....+.+|+|++.+ .++++-...+.|+.+++...... .............+.+|++.+.+++++++-...+.|.+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 45667899999854 45556666788988888753100 001111111345677899987556777777778899999
Q ss_pred eCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-C
Q 042883 407 DVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-N 484 (597)
Q Consensus 407 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~ 484 (597)
++........+...-..+.+|++.|..+.++++-... .+.|...++.. .....+ ...-.....|++++. +
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~------~~~I~~~~~dG--~~~~~lv~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSG 570 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC------CCeEEEEecCC--CceEEEEeCCCCCceEEEEecCCC
Confidence 9875544333333445688999998556666664321 24588888874 333333 333467899999976 6
Q ss_pred eEEEe-eCCCcEEEEEcCCCcceeeeeCCC--CceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 485 ELASA-STDSSLRLWDVKENLPLHTFRGHT--NEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 485 ~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
.|+.+ ...+.|..+|+........+.... ....+|++. .+.++++-...+.|...|..+++.+..+
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 65554 456789999987544333333221 223455552 2344455556788999988777655444
No 342
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.37 E-value=3e-06 Score=90.10 Aligned_cols=219 Identities=6% Similarity=-0.088 Sum_probs=122.8
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC----CeeeeEEeeccceeE
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT----SQSVMEYEEHEKRAW 425 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~ 425 (597)
.+.|++.++.+. ...........+.+|+|++.++.++++-...+.|+.+++.+ ......+......+.
T Consensus 385 ~~~I~~id~~~~--------~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~ 456 (699)
T 1n7d_A 385 RHEVRKMTLDRS--------EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 456 (699)
T ss_dssp TTC-CEECTTSC--------CEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred ccceEEEeCCCC--------cceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence 456777776654 11111122345678999984455555555668899999875 222222222223456
Q ss_pred EEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-CeEEEeeC-C-CcEEEEEcC
Q 042883 426 SVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NELASAST-D-SSLRLWDVK 501 (597)
Q Consensus 426 ~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~-d-~~v~iwd~~ 501 (597)
.|++.+.++.++++-.. .+.|.++++.. ..+..+ .........++++|. +.|+.+.. . +.|.++++.
T Consensus 457 glavD~~~g~LY~tD~~-------~~~I~v~d~dg--~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSV-------LGTVSVADTKG--VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp CEECCCSSSBCEECCTT-------TSCEEEEBSSS--CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred eEEEEeeCCcEEEEecc-------CCeEEEEecCC--CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 78888656676666443 34589999874 333333 222345678899986 65555443 2 678888776
Q ss_pred CCcceeeeeCCCCceeEEEEeecC-CEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCe
Q 042883 502 ENLPLHTFRGHTNEKNFVGLTVNN-EYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPT 580 (597)
Q Consensus 502 ~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 580 (597)
.......+.......+.|+|+|++ .++++-+..+.|..+++............. ......+|++..+ .+
T Consensus 528 G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~---------~~~~P~glavd~~-~l 597 (699)
T 1n7d_A 528 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---------RLAHPFSLAVFED-KV 597 (699)
T ss_dssp SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS---------SCSSCCCCEEETT-EE
T ss_pred CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC---------cCCCceEeEEECC-EE
Confidence 432222222223456789999875 455556667889999986533322221110 0123445566543 44
Q ss_pred EEEecCcccEEEEEe
Q 042883 581 MLTANRKGAIKVLVL 595 (597)
Q Consensus 581 l~s~~~dg~v~iwd~ 595 (597)
+++....+.|..++.
T Consensus 598 ywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 598 FWTDIINEAIFSANR 612 (699)
T ss_dssp EEECSTTTCEEEEET
T ss_pred EEEeCCCCeEEEEEc
Confidence 555556677877764
No 343
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.0002 Score=77.76 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=146.0
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCc---eEecCCCceeEEEEecCCCCEEEEeeCCCcEEE
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPM---VEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI 405 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i 405 (597)
...|.++..+++|. |..|+.++-|..|+.....-.... ..+. ...-....|.++...+ + ..|..|+.++.|..
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~v~~i~~d~-~-g~lWigt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWS-YSPTQMNESSLSNKVVSSVCDDG-Q-GKLWIGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC-----CCCSSCCSSSCEEEEEECT-T-SCEEEEEBSSCEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeec-cCccccccCCCCCcceEEEEEcC-C-CCEEEEeCCCcEEE
Confidence 46799999999886 566776777888887654110000 0000 0001235688888775 3 45667776777999
Q ss_pred EeCCCCeeeeEE---eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec---cCCCceEEEE
Q 042883 406 WDVTTSQSVMEY---EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN---GHKKAVSYVK 479 (597)
Q Consensus 406 wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~v~ 479 (597)
||..++...... ......|.++...+ ++.+.+... ++.|..||..+ ++ ...+. .....|.++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigt~--------~~Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWFGTY--------LGNISYYNTRL-KK-FQIIELEKNELLDVRVFY 456 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECT-TSCEEEEET--------TEEEEEECSSS-CE-EEECCSTTTCCCCEEEEE
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEEEec--------cCCEEEEcCCC-Cc-EEEeccCCCCCCeEEEEE
Confidence 997654332211 11235688888876 556555322 23388888765 32 23332 1346789998
Q ss_pred ecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCC-----CCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 480 FLSNNELASASTDSSLRLWDVKENLPLHTFRGH-----TNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 480 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
..+++.|..|+. +-|..||..+++........ ...|.++..+++|.+.+ |+.++-|..||..+++...... .
T Consensus 457 ~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~ 533 (781)
T 3v9f_A 457 EDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQ-Y 533 (781)
T ss_dssp ECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECT-T
T ss_pred ECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccC-C
Confidence 888888888887 56889998876543332221 35688888888887655 4443447788876654332111 1
Q ss_pred CCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 555 SDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 555 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
. .-....|.++..+++|.+.++.. +|.|..||.
T Consensus 534 ~-------~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 534 E-------GFCSNTINQIYRSSKGQMWLATG-EGLVCFPSA 566 (781)
T ss_dssp T-------TCSCSCEEEEEECTTSCEEEEET-TEEEEESCT
T ss_pred C-------CCCCCeeEEEEECCCCCEEEEEC-CCceEEECC
Confidence 0 01155789999998888766554 665466654
No 344
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.35 E-value=3.9e-06 Score=89.20 Aligned_cols=212 Identities=8% Similarity=-0.015 Sum_probs=124.2
Q ss_pred CCcEEEEEEcCCCCEEEEe-eCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDELFASA-GVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
...+.+++|++.+..|+.+ ...+.|+.+++.+..... ............+.+|++.+.+++++++-...+.|.+++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~---~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 481 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C---CCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc---ceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence 3456788999866655544 456889999887520000 000111111233556888764667777766778999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-Ce
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NE 485 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~ 485 (597)
+........+.........|++.|.++.++++.... .+.|..+++.. .....+ .........|+|+|+ +.
T Consensus 482 ~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~------~~~I~~~~~dG--~~~~~l~~~~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 482 TKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGR 553 (699)
T ss_dssp SSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS------SCCEEBCCSSS--CCCCEESCSSCSSCCCEEECTTTCC
T ss_pred cCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC------CCeEEEEeCCC--CCeeEEEeCCCCCccEEEEeccCCE
Confidence 875543333333334578899998566666654321 24578877763 222222 222345678999987 54
Q ss_pred -EEEeeCCCcEEEEEcCCCcceeeee--CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccc
Q 042883 486 -LASASTDSSLRLWDVKENLPLHTFR--GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHR 552 (597)
Q Consensus 486 -l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 552 (597)
+++-+..+.|..+|+........+. ........|++..+ .++++....+.|..++..+++.+..+.
T Consensus 554 LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 554 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4555567789999987533222222 11223345666443 455556667899999987777655554
No 345
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.34 E-value=1.2e-05 Score=85.48 Aligned_cols=237 Identities=7% Similarity=0.007 Sum_probs=129.5
Q ss_pred EEEEEEcCCCCEEEEeeC-CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee-CC-----CcEE
Q 042883 332 ISSIEFDRDDELFASAGV-SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-YD-----GIVT 404 (597)
Q Consensus 332 v~~i~~~~~~~~l~t~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-~d-----g~i~ 404 (597)
..++++..++.+++.|+. ++.+.+||..+...... . .......-.+++..+ ++.+++.|+ .+ ..+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~--~----~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e 317 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG--P----DMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGE 317 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC--C----CCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC--C----CCCccccccceEEec-CCeEEEEeCcccCCcccccce
Confidence 345677889999999884 46899999876521111 0 111111223445555 678888888 44 4689
Q ss_pred EEeCCCCeeeeEE----eeccceeEEEEeCCCCCceEEeecCCCcc--cCCCCeEEEEEccCCCcceeeeccCC------
Q 042883 405 IWDVTTSQSVMEY----EEHEKRAWSVDFSCTEPSMLVSGSDDCKV--GSADHHIHYYDLRNISQPLHVFNGHK------ 472 (597)
Q Consensus 405 iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~~--~~~d~~i~i~d~~~~~~~~~~~~~~~------ 472 (597)
+||..++.....- ......-....+.. ++.+++.++.++.+ ......+..||..... .......+.
T Consensus 318 ~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~~ 395 (656)
T 1k3i_A 318 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVA 395 (656)
T ss_dssp EEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEEC
T ss_pred EeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCccccccccC
Confidence 9999877644320 00000000112223 55666666655543 1224568899988632 222211111
Q ss_pred ---CceEEEEecC-C-CeEEEeeCCC-----------cEEEEEcCCCcceeee--eCCCCc-eeEEEEeecCCEEEEEeC
Q 042883 473 ---KAVSYVKFLS-N-NELASASTDS-----------SLRLWDVKENLPLHTF--RGHTNE-KNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 473 ---~~v~~v~~~~-~-~~l~s~~~d~-----------~v~iwd~~~~~~~~~~--~~~~~~-v~~v~~s~~g~~l~~~~~ 533 (597)
..-.++.+.. + ..++.|+.++ .|.+||..+....... ...... -.+++..|+|++++.||.
T Consensus 396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~ 475 (656)
T 1k3i_A 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQ 475 (656)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCc
Confidence 1223444433 3 5566676432 5788888765543322 111221 234556689999999986
Q ss_pred C-----------CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecC
Q 042883 534 T-----------NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANR 586 (597)
Q Consensus 534 d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~ 586 (597)
+ ..+.+||..+.+-...-.... .........+.|+|+.++.||.
T Consensus 476 ~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~---------~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 476 RRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI---------VRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS---------CCCTTEEEEECTTSCEEEEECC
T ss_pred ccCcCcCCCCcccceEEEcCCCCceeecCCCCC---------ccccccHhhcCCCcEEEecCCC
Confidence 4 468999987765432211110 0122234456789999999885
No 346
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.34 E-value=0.00018 Score=68.24 Aligned_cols=195 Identities=9% Similarity=0.052 Sum_probs=115.3
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEc
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDL 458 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~ 458 (597)
....+++|++ +++++++...++.|..||.... ....+ .....+..+++.+ ++.++++..... ...|..+|.
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~-dG~l~vad~~~~-----~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTS-NGDLVATGWNAD-----SIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECT-TSCEEEEEECTT-----SCEEEEEEC
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcC-CCcEEEEeccCC-----cceEEEEcC
Confidence 5677899999 6777777767899999997653 33333 2345789999998 666666543210 113666676
Q ss_pred cCCCcceeeec-cCCCceEEEEecCCCeEE-EeeCCCcEEEEEcCCCcc-eeee---------eCCCCceeEEEEeecCC
Q 042883 459 RNISQPLHVFN-GHKKAVSYVKFLSNNELA-SASTDSSLRLWDVKENLP-LHTF---------RGHTNEKNFVGLTVNNE 526 (597)
Q Consensus 459 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~l~-s~~~d~~v~iwd~~~~~~-~~~~---------~~~~~~v~~v~~s~~g~ 526 (597)
.+ +....... ........++..+++.++ +...++.|.++|..+++. +... .......+.+ +++|.
T Consensus 103 ~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 103 SD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp TT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred CC-CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 54 33222211 112233455555555544 444588999999765421 1100 0111234555 88887
Q ss_pred EEEEE-eCCCcEEEEEccC-CccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 527 YIACG-SETNEVFVYHKAI-SKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 527 ~l~~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
+|+++ ...+.|..|++.. ++......+.. ......++++++|.++++....+.|.+||.
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----------QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----------SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEec----------cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 66554 5578999999875 32211100000 123567899999988777777788888874
No 347
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.27 E-value=8.2e-05 Score=78.81 Aligned_cols=161 Identities=10% Similarity=0.116 Sum_probs=104.4
Q ss_pred EEEEecCCCCEEEEeeCCC-------------------cEEEEeCCCCeeeeEEeec--c-------ceeEEEEeCCCCC
Q 042883 383 CLSWNKYTKNLIASSDYDG-------------------IVTIWDVTTSQSVMEYEEH--E-------KRAWSVDFSCTEP 434 (597)
Q Consensus 383 ~v~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~ 434 (597)
.+++.| ....++.+..++ .|..+|..+|+.+..+... . .++....+.. ++
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G 311 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DG 311 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CC
Confidence 467887 567787777665 3999999999988777542 1 1111112111 33
Q ss_pred c---eEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC------------Cc------------------------e
Q 042883 435 S---MLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK------------KA------------------------V 475 (597)
Q Consensus 435 ~---~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~~------------------------v 475 (597)
. .++.++. +|.++++|..+ ++.+....... .+ -
T Consensus 312 ~~~~~v~~~~~-------~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w 383 (668)
T 1kv9_A 312 KPRKVLMQAPK-------NGFFYVLDRTN-GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW 383 (668)
T ss_dssp EEEEEEEECCT-------TSEEEEEETTT-CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred cEEEEEEEECC-------CCEEEEEECCC-CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence 3 5666664 55699999887 55442211100 00 0
Q ss_pred EEEEecCC-CeEEEe------------------------------------eCCCcEEEEEcCCCcceeeeeCCCCceeE
Q 042883 476 SYVKFLSN-NELASA------------------------------------STDSSLRLWDVKENLPLHTFRGHTNEKNF 518 (597)
Q Consensus 476 ~~v~~~~~-~~l~s~------------------------------------~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 518 (597)
..++++|+ +.+++. ..+|.|..||+.+++.+-++... .....
T Consensus 384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~ 462 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNG 462 (668)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCC
T ss_pred CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcC
Confidence 12567777 555431 13478999999999987776543 23344
Q ss_pred EEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 519 VGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 519 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
..+...|.++++++.||.|+.||..+++.+..+..+
T Consensus 463 ~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 463 GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 456667889999999999999999999998887764
No 348
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.26 E-value=4.4e-07 Score=69.83 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCcccccccc-ccccccc--ccccccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCchh
Q 042883 37 RDTLCPICKQ-LMTDAFM--TACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQVANAASPIE 113 (597)
Q Consensus 37 ~~l~C~IC~~-~f~~P~~--l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 113 (597)
|++.|+||.+ ++.+|+. +.|||+||..|++.+...... . + .-.+....+. . . .
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~--~-~-~h~l~~~~~~------------------~-~-~ 57 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKP--F-T-GHRLIEPIPD------------------S-H-I 57 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSS--S-T-TCCBSSCCCS------------------C-C-S
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCc--c-C-CCeeeccccc------------------c-C-c
Confidence 6899999996 5889988 999999999999984432110 0 0 0000000000 0 0 0
Q ss_pred hHhhhhhhc-ccccccchhhhhhHHHHhhh
Q 042883 114 HLRLALQQG-CEVSVKELDGLLSLLVAKKR 142 (597)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 142 (597)
....|..|. ..+..||..+...+|..|..
T Consensus 58 ~~~~C~~H~~e~l~~fC~~~~~~iC~~C~~ 87 (101)
T 2jun_A 58 RGLMCLEHEDEKVNMYCVTDDQLICALCKL 87 (101)
T ss_dssp SCCCCSSCSSSCCCEEETTTTEEECHHHHH
T ss_pred cCCcCcCcCCCcceEECCCCCCccchhcCC
Confidence 124688884 77899999999888888754
No 349
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00031 Score=76.25 Aligned_cols=237 Identities=11% Similarity=0.059 Sum_probs=143.7
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...|.++..+++|. |..|+.++-|.+|+..+...... .. ........|.++...+ ++ .|..|+.++.|..||.
T Consensus 362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~--~~--~~~~~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN--KE--NRELLSNSVLCSLKDS-EG-NLWFGTYLGNISYYNT 434 (781)
T ss_dssp SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC---------CCCSBEEEEEECT-TS-CEEEEETTEEEEEECS
T ss_pred CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc--cC--CCCCCCcceEEEEECC-CC-CEEEEeccCCEEEEcC
Confidence 35799999988876 55566666688888765411100 00 0012345788888775 34 4566777778999998
Q ss_pred CCCeeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC-----CCceEEEEec
Q 042883 409 TTSQSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH-----KKAVSYVKFL 481 (597)
Q Consensus 409 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~v~~v~~~ 481 (597)
.+++...... .....|.++...+ ++.+.+... .| |..||..+ +......... ...|.++...
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~-~G--------l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH-AG--------VFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET-TE--------EEEEESSS-SSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred CCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC-Cc--------eEEEeCCC-CeEEecccCcccccccceeEEEEEc
Confidence 7765432211 1245788888886 566655433 22 78999875 3322222111 3578899888
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCcceeeeeC----CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCC
Q 042883 482 SNNELASASTDSSLRLWDVKENLPLHTFRG----HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDA 557 (597)
Q Consensus 482 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 557 (597)
+++.|..|+.++-|..||..+++. ..+.. ....|.++..+++|.+.++. .+|-|..||..+++........
T Consensus 504 ~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~--- 578 (781)
T 3v9f_A 504 SEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQVFQRKE--- 578 (781)
T ss_dssp TTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEEECGGG---
T ss_pred CCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEEccccC---
Confidence 888888888755688899876543 33321 13467888888888765544 4665588888766533211100
Q ss_pred CCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 558 DHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
.-....|.++..+++|.+.+++ .+| |..|+.
T Consensus 579 -----gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~ 609 (781)
T 3v9f_A 579 -----GLPNTHIRAISEDKNGNIWAST-NTG-ISCYIT 609 (781)
T ss_dssp -----TCSCCCCCEEEECSSSCEEEEC-SSC-EEEEET
T ss_pred -----CCCCceEEEEEECCCCCEEEEc-CCc-eEEEEC
Confidence 0013457888888888766654 445 444543
No 350
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.26 E-value=0.00059 Score=71.31 Aligned_cols=222 Identities=7% Similarity=-0.079 Sum_probs=136.8
Q ss_pred EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccc
Q 042883 343 LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEK 422 (597)
Q Consensus 343 ~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 422 (597)
+|+.+ ..+.|+..++.+... ........-..+.+|+|++.++.++++-..++.|..+++........+.....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~------~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~ 80 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNN------NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD 80 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTC------EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred EEEEE-eCCcEEEEECCCCCc------ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence 34433 466788888875410 01111122346789999996666666777788999999875543333332224
Q ss_pred eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-CeEEEeeC--CCcEEEE
Q 042883 423 RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NELASAST--DSSLRLW 498 (597)
Q Consensus 423 ~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~--d~~v~iw 498 (597)
.+.++++.+.+++++++-.. .+.|.+.++.. .....+ ...-.....++++|. +.|+.... .+.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~-------~~~I~v~~~dG--~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTG-------TNRIEVSKLDG--QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CCCEEEEETTTTEEEEEETT-------TTEEEEEETTS--TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcceEEEEeCCCEEEEEECC-------CCEEEEEecCC--CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence 57788888756666666553 34589999874 223332 234456789999986 77766553 4678778
Q ss_pred EcCCCcceeeeeCCCCceeEEEEeecCCEEEE-EeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccC
Q 042883 499 DVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC-GSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSD 577 (597)
Q Consensus 499 d~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~ 577 (597)
++.... ...+.......+.+++++++..|+. -...+.|..+|+..... ..+... .....++++..
T Consensus 152 ~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----------l~~P~glav~~- 217 (628)
T 4a0p_A 152 AMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----------LPHPFGLTQYQ- 217 (628)
T ss_dssp ETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----------CSCEEEEEEET-
T ss_pred eCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----------CCCceEEEEEC-
Confidence 876543 3333334456789999997665544 45678899999865433 222111 23356777764
Q ss_pred CCeEEEecCcccEEEEE
Q 042883 578 SPTMLTANRKGAIKVLV 594 (597)
Q Consensus 578 ~~~l~s~~~dg~v~iwd 594 (597)
+..+++-...+.|...|
T Consensus 218 ~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 218 DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CEEEEecCCCCEEEEEE
Confidence 44555555567777666
No 351
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.25 E-value=0.00038 Score=67.37 Aligned_cols=238 Identities=13% Similarity=0.068 Sum_probs=126.4
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC---CCCEEEEeeCC-----C
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY---TKNLIASSDYD-----G 401 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~---~~~~l~s~~~d-----g 401 (597)
...+.++|.|+|+++++ ..+|.|.+++ . +...... ..+ ...........|+|+|+ ++.++++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~~~~~~-~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-E-GRLSTYA-ELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE-T-TEEEEEE-ECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE-C-CCccEee-cce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 35779999999985554 5569999988 2 2111000 000 11123457889999993 24444444332 5
Q ss_pred cEEEEeCCCCe-----ee-eEEe---eccceeEEEEeCCCCCceEEeecCCCcc------cCCCCeEEEEEccCC---C-
Q 042883 402 IVTIWDVTTSQ-----SV-MEYE---EHEKRAWSVDFSCTEPSMLVSGSDDCKV------GSADHHIHYYDLRNI---S- 462 (597)
Q Consensus 402 ~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~~------~~~d~~i~i~d~~~~---~- 462 (597)
.|..|+...+. .+ ..+. +.......++|.| ++.++++.+..+.. ....+.|.-+|.... .
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 78888876431 11 1122 1112346899999 67777765433221 112356666666520 0
Q ss_pred -------cceeee-ccCCCceEEEEecCC-CeEEEeeCC-Cc--------EEEEEcCC----------------Ccceee
Q 042883 463 -------QPLHVF-NGHKKAVSYVKFLSN-NELASASTD-SS--------LRLWDVKE----------------NLPLHT 508 (597)
Q Consensus 463 -------~~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~d-~~--------v~iwd~~~----------------~~~~~~ 508 (597)
.....+ .++ .....++|+|+ +.|+++... +. |.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 011111 223 23578899994 655554432 22 33332111 012233
Q ss_pred eeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccc----ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe
Q 042883 509 FRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAA----SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 509 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
+. +......++| .+|.++++.-..+.|...++....... ...+.. ....+.++++.|+|.++++.
T Consensus 264 ~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---------~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 264 WP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---------GFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---------SSCCEEEEEECTTSCEEEEE
T ss_pred cC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc---------cCCCeeEEEECCCCcEEEEE
Confidence 32 2234567887 577777766667788888876543210 111100 03468999999999877775
Q ss_pred c
Q 042883 585 N 585 (597)
Q Consensus 585 ~ 585 (597)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
No 352
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=1.4e-06 Score=61.11 Aligned_cols=46 Identities=22% Similarity=0.629 Sum_probs=38.7
Q ss_pred Ccccccccccccccc-cccccccccHHHHHHhhcCC--CCCCCCCCCCc
Q 042883 38 DTLCPICKQLMTDAF-MTACGHSFCYTCIFTHLRNK--SDCPCCGCHLT 83 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~-~l~CgH~FC~~Cl~~~~~~~--~~CP~Cr~~~~ 83 (597)
.-.|.||.+.|..-. ...|+|.|-..||.+|+... ..||.||....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 467999999998433 33799999999999999877 67999998765
No 353
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.24 E-value=0.0001 Score=76.37 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 492 DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 492 d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
+|.|..||..+++.+-++... ..+....+...+..+++++.||.|+.||..+++.+..+..+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 578999999999887776532 22333334455677888999999999999999999887764
No 354
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.23 E-value=0.00058 Score=71.36 Aligned_cols=206 Identities=7% Similarity=-0.091 Sum_probs=131.3
Q ss_pred CCcEEEEEEcCCCCEE-EEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEe
Q 042883 329 ANIISSIEFDRDDELF-ASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWD 407 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l-~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd 407 (597)
-..+.+++|++.+..| ++...++.|..+++++. ............+.++++.+.+++++++-...+.|.+.+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-------~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~ 108 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGS-------ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK 108 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-------SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCC-------CcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence 3467899999965554 55566788999988754 111111112245678888875667777777778999999
Q ss_pred CCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC-CeE
Q 042883 408 VTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-NEL 486 (597)
Q Consensus 408 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l 486 (597)
+........+...-....+|++.|..+.++.+-.. ..+.|...++.. .....+...-.....|+++++ +.|
T Consensus 109 ~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g------~~~~I~r~~~dG--~~~~~l~~~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 109 LDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG------GKPKIDRAAMDG--SERTTLVPNVGRANGLTIDYAKRRL 180 (628)
T ss_dssp TTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS------SSCEEEEEETTS--CSCEEEECSCSSEEEEEEETTTTEE
T ss_pred cCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC------CCCEEEEEeCCC--CceEEEECCCCCcceEEEccccCEE
Confidence 86543322232334567899999866776666421 134577777764 333333334567899999987 655
Q ss_pred EE-eeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcccccc
Q 042883 487 AS-ASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASH 551 (597)
Q Consensus 487 ~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 551 (597)
+. -...+.|..+|+..... ..+........++++.. +.++++-...+.|...|..+++....+
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 54 45667899999876443 33433334456787754 455556556789999998777654433
No 355
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.22 E-value=6.9e-07 Score=64.86 Aligned_cols=45 Identities=29% Similarity=0.733 Sum_probs=37.9
Q ss_pred ccccccccccc-cccccccccccHHHHHHhhcC-CCCCCCCCCCCcc
Q 042883 40 LCPICKQLMTD-AFMTACGHSFCYTCIFTHLRN-KSDCPCCGCHLTC 84 (597)
Q Consensus 40 ~C~IC~~~f~~-P~~l~CgH~FC~~Cl~~~~~~-~~~CP~Cr~~~~~ 84 (597)
.|++|.-.+.. -+++||.|.||..|+..|... ...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58899888875 489999999999999998854 4669999998863
No 356
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.19 E-value=0.0002 Score=67.39 Aligned_cols=189 Identities=6% Similarity=0.125 Sum_probs=118.4
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCC---CCc---eEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCT---EPS---MLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 391 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
...++.....+.+.+||+ +|+.+..+.. +.++.+..-|. ++. ++++...+ ..++.|.+|++......
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~----~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS----EGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS----TTCCEEEEEEECTTTCC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC----CCCCeEEEEEECCCCCc
Confidence 445666667789999999 7888888753 45666666551 111 23333221 00456999987422334
Q ss_pred eeeecc------CC-CceEEEEe--cCC-C--eEEEeeCCCcEEEEEcC-------CCcceeeeeCCCCceeEEEEeecC
Q 042883 465 LHVFNG------HK-KAVSYVKF--LSN-N--ELASASTDSSLRLWDVK-------ENLPLHTFRGHTNEKNFVGLTVNN 525 (597)
Q Consensus 465 ~~~~~~------~~-~~v~~v~~--~~~-~--~l~s~~~d~~v~iwd~~-------~~~~~~~~~~~~~~v~~v~~s~~g 525 (597)
+..+.. .. ..+..+++ +|. + ++++...+|.+..|++. +.+.++++.. .+.+..+..++..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence 554421 11 45666777 665 4 47788888999999983 3456677764 4567889999888
Q ss_pred CEEEEEeCCCcEEEEEccC-----CccccccccCCCCCCCcCcCCCcceEEEEE--ccCCC-eEEEec-CcccEEEEEec
Q 042883 526 EYIACGSETNEVFVYHKAI-----SKPAASHRFGSDADHVDDDMGSYFISAVCW--KSDSP-TMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 526 ~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~--~~~~~-~l~s~~-~dg~v~iwd~~ 596 (597)
..|+++-.+.-|..|+... ++.+.....+. -...+..|+. .++++ ||++.+ .++++.|||..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~---------l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH---------LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS---------BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc---------cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8899998886676666442 23333222111 1335788887 45555 666555 67789999874
No 357
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.18 E-value=0.00014 Score=75.36 Aligned_cols=242 Identities=9% Similarity=0.037 Sum_probs=131.4
Q ss_pred EEEcCCCCE----EEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeE-EEEecCCCCEEEEee------CCCcE
Q 042883 335 IEFDRDDEL----FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSC-LSWNKYTKNLIASSD------YDGIV 403 (597)
Q Consensus 335 i~~~~~~~~----l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~~~~~~~l~s~~------~dg~i 403 (597)
++++|.+.. +++++.|+.|..+|..++........... .....+++ -... ++ .+++++ .+|.|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~---~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v 184 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDI---KVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYL 184 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG---GGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCC---CccceeecCCEEE--CC-EEEEEecccccCCCCeE
Confidence 445444444 77888899999999887722111000000 00001111 1111 33 455554 37999
Q ss_pred EEEeCCCCeeeeEEeeccce-------------------------------------eE-EEEeCCCCCceEEeecCCCc
Q 042883 404 TIWDVTTSQSVMEYEEHEKR-------------------------------------AW-SVDFSCTEPSMLVSGSDDCK 445 (597)
Q Consensus 404 ~iwd~~~~~~~~~~~~~~~~-------------------------------------v~-~~~~~~~~~~~l~s~~~d~~ 445 (597)
+-+|..+|+.+..+...... ++ .+++.+ ...++..+..+..
T Consensus 185 ~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~ 263 (599)
T 1w6s_A 185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPA 263 (599)
T ss_dssp EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCS
T ss_pred EEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCc
Confidence 99999999988776532111 11 234444 3334443332210
Q ss_pred c---------cCCCCeEEEEEccCCCcceeeecc--CC--------CceEEEEec-CCC----eEEEeeCCCcEEEEEcC
Q 042883 446 V---------GSADHHIHYYDLRNISQPLHVFNG--HK--------KAVSYVKFL-SNN----ELASASTDSSLRLWDVK 501 (597)
Q Consensus 446 ~---------~~~d~~i~i~d~~~~~~~~~~~~~--~~--------~~v~~v~~~-~~~----~l~s~~~d~~v~iwd~~ 501 (597)
. ....+.|.-+|..+ ++.+-.+.. |. .++. +... .++ .++.++.+|.++++|..
T Consensus 264 p~~~~~r~gd~~y~~sv~Ald~~T-G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 264 PWNETMRPGDNKWTMTIFGRDADT-GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp CSCGGGSCSCCTTSSEEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred cccCcccCCCccccceEEEEeCCC-CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 0 00124689999987 555544432 21 1111 2221 334 46678899999999999
Q ss_pred CCcceeeeeCCC-------------Cce--------------------------eEEEEeecCCEEEEEe----------
Q 042883 502 ENLPLHTFRGHT-------------NEK--------------------------NFVGLTVNNEYIACGS---------- 532 (597)
Q Consensus 502 ~~~~~~~~~~~~-------------~~v--------------------------~~v~~s~~g~~l~~~~---------- 532 (597)
+|+.+....... .++ ..++++|+..++++..
T Consensus 342 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (599)
T 1w6s_A 342 DGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPF 421 (599)
T ss_dssp TCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecc
Confidence 998876554211 011 2356777655554421
Q ss_pred -----------------------------CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 533 -----------------------------ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 533 -----------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
.+|.|.-||+.+++.+-....+. ++.+-.....+.+++.
T Consensus 422 ~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~------------~~~~g~~~tagg~vf~ 489 (599)
T 1w6s_A 422 MLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF------------AVWGGTMATAGDLVFY 489 (599)
T ss_dssp CCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS------------CCCSBCEEETTTEEEE
T ss_pred cccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC------------CccCcceEecCCEEEE
Confidence 34678888888888776665321 1111112234667777
Q ss_pred ecCcccEEEEEecC
Q 042883 584 ANRKGAIKVLVLAA 597 (597)
Q Consensus 584 ~~~dg~v~iwd~~~ 597 (597)
++.||.|+.||.++
T Consensus 490 gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 490 GTLDGYLKARDSDT 503 (599)
T ss_dssp ECTTSEEEEEETTT
T ss_pred ECCCCeEEEEECCC
Confidence 89999999998653
No 358
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.15 E-value=0.00022 Score=71.09 Aligned_cols=209 Identities=7% Similarity=0.011 Sum_probs=120.1
Q ss_pred CceeEEEEecC-CCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 379 SKLSCLSWNKY-TKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 379 ~~i~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
....+|+|+|+ +...|+.+...+.|+.+|..++...... .....+..++|++ ++.++++...... ....+..++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~---~~~gv~~~~ 213 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSD---TNTGIYLFT 213 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCT---TSEEEEEEC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCc---ccceEEEEE
Confidence 34678999983 2344444444489999998777655443 3445689999999 6666665542211 011244444
Q ss_pred ccCCCcceeeeccCCCceEEEEecC-CCeEEEe-eCCCcEEEEEcCCCcceeeee--CCCCceeEEEEeecCCEE-EEEe
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLS-NNELASA-STDSSLRLWDVKENLPLHTFR--GHTNEKNFVGLTVNNEYI-ACGS 532 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~-~~~l~s~-~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l-~~~~ 532 (597)
..........+. .......++++| ++.|+.+ ..++.|+.+|..++.....+. +.......++|+|+|++| ++-.
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 332111111221 234456788899 5665544 466789999988776523322 112233579999999855 4455
Q ss_pred CCCcEEEEEccC--Cccc--ccccc--CCCCCCCc---CcCCCcceEEEEE---------ccCCCeEEEecCcccEEEEE
Q 042883 533 ETNEVFVYHKAI--SKPA--ASHRF--GSDADHVD---DDMGSYFISAVCW---------KSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 533 ~d~~i~iwd~~~--~~~~--~~~~~--~~~~~~~~---~~~h~~~i~~v~~---------~~~~~~l~s~~~dg~v~iwd 594 (597)
..+.|+.++... +... ..+.- +. ..... ....-.....+++ .++|.++++-..++.|+.++
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~-~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSS-PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTC-CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCC-CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 678899988653 3221 01110 00 00000 0001335778999 77888888877888888876
No 359
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.15 E-value=0.0021 Score=59.29 Aligned_cols=231 Identities=14% Similarity=0.208 Sum_probs=144.9
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC-e
Q 042883 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS-Q 412 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~ 412 (597)
+.-.+|..+.||.-. ..++.|||+.+. ...........|.--.|-. .+.|+... +..|+-|++... .
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK--------~klks~~~~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~ 138 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQ 138 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTT--------EEEEEEECSSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHh--------hhhcceecCCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCC
Confidence 344688888777765 678999999875 3334444456777777874 56666665 468999999753 4
Q ss_pred eeeEEeecc----ceeEEEEeCCCCCce-EEeec--CCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--
Q 042883 413 SVMEYEEHE----KRAWSVDFSCTEPSM-LVSGS--DDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 413 ~~~~~~~~~----~~v~~~~~~~~~~~~-l~s~~--~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-- 483 (597)
++..+..|. ..|..-..++ +.++ +++|- .++. -.|.+.+|... .+.-..+.||.+....+.+..+
T Consensus 139 P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~---v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~ 212 (365)
T 2xzh_A 139 PVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNR---VVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAE 212 (365)
T ss_dssp CEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTE---EEEEEEEEETT--TTEEEEECCSEEEEEEECCTTCSS
T ss_pred CceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCc---cceeEEEEeec--ccccceeeeeeeeeEEEecCCCCC
Confidence 555555443 4577777787 4444 44432 2343 35889999988 4566778888766655544322
Q ss_pred --CeEEEeeC---CCcEEEEEcCCC---ccee------ee-e--CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 484 --NELASAST---DSSLRLWDVKEN---LPLH------TF-R--GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 484 --~~l~s~~~---d~~v~iwd~~~~---~~~~------~~-~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
..+.-+.. .+.++|.++... .+.. .+ . .-....-++..++.-..++.-+.-|.|++||+.++.
T Consensus 213 ~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 213 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 22332222 268999998432 1111 11 1 113334567778777788888899999999999999
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
.+...... ..+|..-+-+....-++.....|.|.--
T Consensus 293 ~i~~nrIS-----------~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 293 CIYMNRIS-----------GETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp EEEEEECC-----------SSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred EEEEeccC-----------CCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 98877764 3345444444333345555566665443
No 360
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.14 E-value=0.00063 Score=71.02 Aligned_cols=220 Identities=8% Similarity=-0.050 Sum_probs=125.0
Q ss_pred CCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCee-eeEEeeccceeEEE
Q 042883 349 VSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS-VMEYEEHEKRAWSV 427 (597)
Q Consensus 349 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~ 427 (597)
....|++.++.... .........-..+.+++|++.++.++++-...+.|..+++..... ...+...-..+.++
T Consensus 16 ~~~~I~~i~~~~~~------~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 16 NRRDLRLVDATNGK------ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CSSBEEEECCC---------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred ccccEEEEeCCCCc------ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 35678888876541 011122233456789999985555565655678899999875532 22232223568899
Q ss_pred EeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-CeEEEeeC--CCcEEEEEcCCC
Q 042883 428 DFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NELASAST--DSSLRLWDVKEN 503 (597)
Q Consensus 428 ~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~--d~~v~iwd~~~~ 503 (597)
++.+.++.++++-.. .+.|.+.++.. .....+ .........|+++|. +.|+.... .+.|...++...
T Consensus 90 AvD~~~~~ly~~d~~-------~~~I~v~~~dG--~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 90 ACDWLGEKLYWTDSE-------TNRIEVSNLDG--SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp EEETTTTEEEEEETT-------TTEEEEEETTS--CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEecCCEEEEEeCC-------CCEEEEEECCC--CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 998856666666553 45599999874 333333 234456789999997 77665553 356777776643
Q ss_pred cceeeeeCCCCceeEEEEeecCCEE-EEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE
Q 042883 504 LPLHTFRGHTNEKNFVGLTVNNEYI-ACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 504 ~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
.............+.+++++++..| ++-...+.|..+|+.......... +. .....+|++..+ ..++
T Consensus 161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~----------~~~P~gi~~~~~-~ly~ 228 (619)
T 3s94_A 161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GS----------LPHPFALTLFED-ILYW 228 (619)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------------CCCEEESSS-EEEE
T ss_pred ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CC----------CCCceEEEEeCC-EEEE
Confidence 3322232334567899999875554 455567789999986543322211 00 122356777655 4445
Q ss_pred EecCcccEEEEEe
Q 042883 583 TANRKGAIKVLVL 595 (597)
Q Consensus 583 s~~~dg~v~iwd~ 595 (597)
+-..++.|...|.
T Consensus 229 td~~~~~V~~~d~ 241 (619)
T 3s94_A 229 TDWSTHSILACNK 241 (619)
T ss_dssp ECTTTCSEEEEES
T ss_pred ecCCCCEEEEEEC
Confidence 5555667766664
No 361
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.13 E-value=0.002 Score=62.24 Aligned_cols=252 Identities=9% Similarity=0.048 Sum_probs=133.4
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC---CCCEEEEeeC-------C
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY---TKNLIASSDY-------D 400 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~---~~~~l~s~~~-------d 400 (597)
..+.|+|.|+|+.|+++...|.|++++......... ...+............|+|+|+ ++.++++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~-~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPL-SGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCC-BSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEe-cCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999998344455679999998543211100 0011111123456789999994 3444444332 2
Q ss_pred CcEEEEeCCCC--e--eeeE-Eeec------cceeEEEEeCCCCCceEEeecCCCc------ccCCCCeEEEEEccCCC-
Q 042883 401 GIVTIWDVTTS--Q--SVME-YEEH------EKRAWSVDFSCTEPSMLVSGSDDCK------VGSADHHIHYYDLRNIS- 462 (597)
Q Consensus 401 g~i~iwd~~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~l~s~~~d~~------~~~~d~~i~i~d~~~~~- 462 (597)
..|..|++..+ . .... +... ......|+|.| ++.++++.++.+. .....|.|.-+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666666432 1 1111 1111 11246799999 7777776554321 01224567777765310
Q ss_pred --c--------ceeee-ccCCCceEEEEecC-CCeEEEeeCCC--cEEEEEcCCC-------------------------
Q 042883 463 --Q--------PLHVF-NGHKKAVSYVKFLS-NNELASASTDS--SLRLWDVKEN------------------------- 503 (597)
Q Consensus 463 --~--------~~~~~-~~~~~~v~~v~~~~-~~~l~s~~~d~--~v~iwd~~~~------------------------- 503 (597)
. ....+ .++ .....++|+| ++.|.++.... .=.|.-+..+
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 0 11222 223 3468899999 47776654331 1122211111
Q ss_pred ------cceeeeeCCCCceeEEEEee-------cCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceE
Q 042883 504 ------LPLHTFRGHTNEKNFVGLTV-------NNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFIS 570 (597)
Q Consensus 504 ------~~~~~~~~~~~~v~~v~~s~-------~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 570 (597)
.++..+.. ...+..+.|.. +|.++++.-..+.|...++..++......+-. .-...+.
T Consensus 256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~rp~ 326 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT--------DRGQRIR 326 (353)
T ss_dssp SCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG--------GGCCCEE
T ss_pred CCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc--------CCCCcee
Confidence 11122222 23456777764 46777777677888888887654332222100 0034689
Q ss_pred EEEEccCCCeEEEec-CcccEEEEEec
Q 042883 571 AVCWKSDSPTMLTAN-RKGAIKVLVLA 596 (597)
Q Consensus 571 ~v~~~~~~~~l~s~~-~dg~v~iwd~~ 596 (597)
+|++.|+|.++++.. .+| +||.|.
T Consensus 327 ~v~~~pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 327 DVRTGPDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp EEEECTTSCEEEEECSTTE--EEEEEE
T ss_pred EEEECCCCcEEEEEeCCCC--EEEEEe
Confidence 999999998777543 455 556654
No 362
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.11 E-value=0.005 Score=59.15 Aligned_cols=231 Identities=14% Similarity=0.208 Sum_probs=147.4
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC-e
Q 042883 334 SIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS-Q 412 (597)
Q Consensus 334 ~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~ 412 (597)
+.-.+|..+.||.-. ..++.|||+.+. ...........|.--.|-. .+.|+..+ +..|+-|++.+. .
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K--------~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~ 137 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQ 137 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTT--------EEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHh--------hhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCC
Confidence 345778888777765 778999999875 3333334456777777874 55666655 468999999753 4
Q ss_pred eeeEEeecc----ceeEEEEeCCCCCceEE-eec--CCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC--
Q 042883 413 SVMEYEEHE----KRAWSVDFSCTEPSMLV-SGS--DDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN-- 483 (597)
Q Consensus 413 ~~~~~~~~~----~~v~~~~~~~~~~~~l~-s~~--~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-- 483 (597)
++..+..|. ..|..-..++ +.++++ +|- .++. -.|.+.+|... .+.-..+.||.+....+....+
T Consensus 138 P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~---v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 138 PVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNR---VVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAE 211 (494)
T ss_dssp CEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTE---EEEEEEEEEST--TCCEEEECCSEEEEEEEECTTCSS
T ss_pred chhheecchhcccceEEEEEECC-CCCeEEEEeecccCCc---ccceEEEeecc--ccccchheeeeeeeEEEecCCCCC
Confidence 555555443 4577777787 555444 332 2333 36889999988 4667778888777666665432
Q ss_pred --CeEEEeeC---CCcEEEEEcCCC---ccee-----e-e-e--CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCc
Q 042883 484 --NELASAST---DSSLRLWDVKEN---LPLH-----T-F-R--GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 484 --~~l~s~~~---d~~v~iwd~~~~---~~~~-----~-~-~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
..+.-+.. .+.++|.++... .+.. . + . .-....-++..++.-..++.-+.-|.|++||+.++.
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 22333332 378999998542 1111 1 1 1 113344567888887788888899999999999999
Q ss_pred cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEE
Q 042883 547 PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVL 593 (597)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iw 593 (597)
.+...... ..+|..-+-+....-++.....|.|.--
T Consensus 292 ~i~~nrIs-----------~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 292 CIYMNRIS-----------GETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp EEEEEECC-----------SSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred eeeeeccc-----------CCceEEecccCCCCcEEEEccCceEEEE
Confidence 98877764 3445444444444445555566665433
No 363
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.10 E-value=1.6e-06 Score=58.46 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=40.2
Q ss_pred CCccccccccccccccccccc--c---cccHHHHHHhhcC--CCCCCCCCCCCcc
Q 042883 37 RDTLCPICKQLMTDAFMTACG--H---SFCYTCIFTHLRN--KSDCPCCGCHLTC 84 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~l~Cg--H---~FC~~Cl~~~~~~--~~~CP~Cr~~~~~ 84 (597)
++-.|.||++...+|..+||. | .|-+.||.+|+.. ...||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 457899999998889889965 4 8999999999974 4569999998864
No 364
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.00036 Score=69.53 Aligned_cols=158 Identities=8% Similarity=0.056 Sum_probs=96.7
Q ss_pred ceeEEEEec-CCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCc-eEEeecCCCcccCCCCeEEEEE
Q 042883 380 KLSCLSWNK-YTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPS-MLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 380 ~i~~v~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~~~~~d~~i~i~d 457 (597)
....|+|+| +++. |+++...+.|+.+|+.++...... ........++|++ +++ ++++...++. ....+.+++
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~---~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNN---DRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCT---TSEEEEEEE
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCc---ccceEEEEe
Confidence 567899997 3444 444444488999998776544333 3455688999999 666 5555543322 122345555
Q ss_pred ccCCCcceeeeccCCCceEEEEecC-CCeEE-EeeCCCcEEEEEcCCCcceeeee-CCCCceeEEEEeecCCEE-EEEeC
Q 042883 458 LRNISQPLHVFNGHKKAVSYVKFLS-NNELA-SASTDSSLRLWDVKENLPLHTFR-GHTNEKNFVGLTVNNEYI-ACGSE 533 (597)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~v~~~~-~~~l~-s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l-~~~~~ 533 (597)
..........+. .......++++| ++.|+ +-..++.|..||..++....... +.......++|+|+|++| ++...
T Consensus 212 ~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 212 RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 443111112222 123457788999 55555 44467889999988665422222 122456789999999954 45556
Q ss_pred CCcEEEEEccC
Q 042883 534 TNEVFVYHKAI 544 (597)
Q Consensus 534 d~~i~iwd~~~ 544 (597)
.+.|..|+...
T Consensus 291 ~~~I~~~~~d~ 301 (430)
T 3tc9_A 291 QHYILRSDYDW 301 (430)
T ss_dssp TTEEEEEEEET
T ss_pred CCEEEEEeCCc
Confidence 78899988763
No 365
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.08 E-value=0.0024 Score=61.64 Aligned_cols=241 Identities=9% Similarity=0.013 Sum_probs=128.7
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC---CCCEEEEeeC---C---
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY---TKNLIASSDY---D--- 400 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~---~~~~l~s~~~---d--- 400 (597)
...+.++|.|+|++++ +..+|.|.+++. .+...... .+ ...........|+++|+ ++.++++-.. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~--~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVAS--FD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEE--CC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeec--cc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 4578999999998555 455699998873 22100000 00 11122356889999994 3444444332 3
Q ss_pred -CcEEEEeCCCC--e-----ee-eEEee-ccceeEEEEeCCCCCceEEeecCCCcc------cCCCCeEEEEEccCCC--
Q 042883 401 -GIVTIWDVTTS--Q-----SV-MEYEE-HEKRAWSVDFSCTEPSMLVSGSDDCKV------GSADHHIHYYDLRNIS-- 462 (597)
Q Consensus 401 -g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~~------~~~d~~i~i~d~~~~~-- 462 (597)
+.|..|+...+ . .+ ..+.. .......|+|.| ++.++++.+..+.. ....|.|.-+|....-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777876543 1 11 11221 112346799999 77777765543221 1223566666665310
Q ss_pred -c---ceeee-ccCCCceEEEEecCC-CeEEEeeCCC----cEEEEEcCC----------------CcceeeeeCCCCce
Q 042883 463 -Q---PLHVF-NGHKKAVSYVKFLSN-NELASASTDS----SLRLWDVKE----------------NLPLHTFRGHTNEK 516 (597)
Q Consensus 463 -~---~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~d~----~v~iwd~~~----------------~~~~~~~~~~~~~v 516 (597)
. ....+ .++. ....++|+|+ +.|+++.... .|.+..... ..++..+......+
T Consensus 183 ~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 183 DNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp TSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 0 11122 2333 3578999994 6666554332 243332111 01233331122346
Q ss_pred eEEEEe-------ecCCEEEEEeCCCcEEEEEccCC-ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec
Q 042883 517 NFVGLT-------VNNEYIACGSETNEVFVYHKAIS-KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 517 ~~v~~s-------~~g~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
..++|. .+|.++++.-..+.|..+++... +......+.. .-...+.++++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--------~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--------NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--------TTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--------CCCCCeeEEEECCCCcEEEEEe
Confidence 778883 46777777667788988888753 2221111110 0034689999999998777764
No 366
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.07 E-value=0.002 Score=60.70 Aligned_cols=197 Identities=10% Similarity=0.196 Sum_probs=119.8
Q ss_pred CCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC---CCC---EEEEeeC---CCcEEEEeCC-
Q 042883 340 DDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY---TKN---LIASSDY---DGIVTIWDVT- 409 (597)
Q Consensus 340 ~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~---~~~---~l~s~~~---dg~i~iwd~~- 409 (597)
...+++.....+-+.+||+... .+.... .+.+..|..-|. ++. ++++... +++|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~---------~l~~~~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGK---------MLHSYN-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSC---------EEEEEC-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred CccEEEEEcCCCCEEEEcCCCc---------EEEEcc-CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 3456666667788999999443 222222 256777776651 111 2333333 5789999763
Q ss_pred -CCeeeeEEee------cc-ceeEEEEe--CCCCCc-eEEeecCCCcccCCCCeEEEEEccCC------CcceeeeccCC
Q 042883 410 -TSQSVMEYEE------HE-KRAWSVDF--SCTEPS-MLVSGSDDCKVGSADHHIHYYDLRNI------SQPLHVFNGHK 472 (597)
Q Consensus 410 -~~~~~~~~~~------~~-~~v~~~~~--~~~~~~-~l~s~~~d~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~ 472 (597)
++ .+..+.. .. ..+..+++ +|..+. ++++... +|.+..|++... .+.++.+.. .
T Consensus 109 ~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-------~G~~~q~~l~~~~~g~~~~~lVR~f~l-g 179 (355)
T 3amr_A 109 KNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-------EGEFEQYELKADKNGYISGKKVRAFKM-N 179 (355)
T ss_dssp TTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-------SSEEEEEEEEECTTSCEEEEEEEEEEC-S
T ss_pred CCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-------CCeEEEEEEEeCCCCcccceEEEEecC-C
Confidence 33 2433311 11 55777787 774453 4555553 455888888431 244566653 4
Q ss_pred CceEEEEecCC-CeEEEeeCCCcEEEEEcC-----CCcceeeee-CC-CCceeEEEEe--ecCC-EEEEEe-CCCcEEEE
Q 042883 473 KAVSYVKFLSN-NELASASTDSSLRLWDVK-----ENLPLHTFR-GH-TNEKNFVGLT--VNNE-YIACGS-ETNEVFVY 540 (597)
Q Consensus 473 ~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~-----~~~~~~~~~-~~-~~~v~~v~~s--~~g~-~l~~~~-~d~~i~iw 540 (597)
+.+-.+...+. +.|+.+-.+.-|..||.. +++.+..+. ++ ...+..|++- ++|+ ||++++ .++.+.+|
T Consensus 180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence 56788888887 999999999777667754 234454442 22 2367888884 4555 666665 56799999
Q ss_pred Ecc-CCccccccccCC
Q 042883 541 HKA-ISKPAASHRFGS 555 (597)
Q Consensus 541 d~~-~~~~~~~~~~~~ 555 (597)
|.. +.+.+..+..+.
T Consensus 260 dr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 260 DRQGKNKYVADFRITD 275 (355)
T ss_dssp ESSTTCCEEEEEEECC
T ss_pred ECCCCCcEEEEEEecC
Confidence 996 666666665443
No 367
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.04 E-value=0.00059 Score=70.69 Aligned_cols=63 Identities=2% Similarity=-0.140 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 491 TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 491 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
.+|.|..||+.+++.+-+.... .+...-.+...|.+++.++.||.|+.||..+|+.+..+..+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 3478999999999877766421 12222223446778888999999999999999999887764
No 368
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.04 E-value=0.0036 Score=65.27 Aligned_cols=189 Identities=6% Similarity=-0.019 Sum_probs=114.6
Q ss_pred EEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccc
Q 042883 343 LFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEK 422 (597)
Q Consensus 343 ~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 422 (597)
+|+.+ ..+.|+..++...... ........-..+.+|+|.+.++.++++-...+.|+.+++........+...-.
T Consensus 319 ~Ll~~-~~~~i~~i~l~~~~~~-----~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~ 392 (619)
T 3s94_A 319 LLLLA-RRTDLRRISLDTPDFT-----DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392 (619)
T ss_dssp EEEEE-ESSCEEEEESSSTTCC-----CEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred EEEEE-cccceEEEecCCCccc-----eeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence 34433 3556777777654110 10111122345788999985566666666678899999875443333333335
Q ss_pred eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeee-ccCCCceEEEEecCC-CeEEEeeC--CCcEEEE
Q 042883 423 RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVF-NGHKKAVSYVKFLSN-NELASAST--DSSLRLW 498 (597)
Q Consensus 423 ~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~-~~l~s~~~--d~~v~iw 498 (597)
.+.++++.+.+++++++-+. .+.|.+.++.. .....+ ...-....++++.|. +.|+.... .+.|...
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~-------~~~I~v~~~~G--~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~ 463 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTG-------TDRIEVTRLNG--TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERA 463 (619)
T ss_dssp CCCEEEEETTTTEEEEEETT-------TTEEEEEETTS--CSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcCceEEecccCcEEEEeCC-------CCcEEEEeCCC--CeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEE
Confidence 67788888656667776553 34589999874 333333 233456899999997 77766553 3567666
Q ss_pred EcCCCcceeeeeCCCCceeEEEEeecCCEEEE-EeCCCcEEEEEccCCc
Q 042883 499 DVKENLPLHTFRGHTNEKNFVGLTVNNEYIAC-GSETNEVFVYHKAISK 546 (597)
Q Consensus 499 d~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~~~ 546 (597)
++............-...+.+++++++..|+. -+..+.|..+++....
T Consensus 464 ~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 464 ALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred ccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 76543332222333456789999987555544 4556789999986443
No 369
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.03 E-value=0.00055 Score=71.01 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=81.3
Q ss_pred CeEEEEEccCCCcceeeec--cCCC-------ceEEEEec-CCC----eEEEeeCCCcEEEEEcCCCcceeeeeCCCC--
Q 042883 451 HHIHYYDLRNISQPLHVFN--GHKK-------AVSYVKFL-SNN----ELASASTDSSLRLWDVKENLPLHTFRGHTN-- 514 (597)
Q Consensus 451 ~~i~i~d~~~~~~~~~~~~--~~~~-------~v~~v~~~-~~~----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-- 514 (597)
+.|.-+|..+ ++.+-.+. .|.. ...-+... .++ .++.++.+|.++++|..+|+.+..+.....
T Consensus 291 ~~v~AlD~~T-G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSS-GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTT-CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCC-CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6799999988 55554442 2321 11111221 233 577899999999999999988766543210
Q ss_pred -----------c--------------------------------eeEEEEeecCCEEEEEe-------------------
Q 042883 515 -----------E--------------------------------KNFVGLTVNNEYIACGS------------------- 532 (597)
Q Consensus 515 -----------~--------------------------------v~~v~~s~~g~~l~~~~------------------- 532 (597)
+ -..++++|+..++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 0 01345666544444322
Q ss_pred --------------CCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 533 --------------ETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 533 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
.+|.|.-||+.+++.+-....+. ++..-.....+.+++.|+.||.++.||.++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~------------~~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL------------PLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS------------CCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC------------CCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 25789999999998876665431 111111222466788899999999998753
No 370
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.02 E-value=0.00043 Score=74.56 Aligned_cols=196 Identities=9% Similarity=0.142 Sum_probs=104.3
Q ss_pred ceeEEEEe-cCCCCEEEEe-eCCC----cEEEEeCCCC-eeee-EEeeccceeEEEEeCCCCCceEEeecCCCcccCCCC
Q 042883 380 KLSCLSWN-KYTKNLIASS-DYDG----IVTIWDVTTS-QSVM-EYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADH 451 (597)
Q Consensus 380 ~i~~v~~~-~~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~ 451 (597)
.+...+|+ | +++.|+.+ ..+| .|+++|+.++ +.+. .+. ....+++|+| ++..|+....+.. ....
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~--~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDET--LREN 247 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTT--CCEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCC--CCCC
Confidence 57789999 9 66666643 3333 4999999988 6332 121 1245789999 5554444443321 0123
Q ss_pred eEEEEEccCCCc-ceeeec-cCCCceEEEEecCC-CeEEEee---CCCcEEEEEcCCCc-ce--eee-eCCCCceeEEEE
Q 042883 452 HIHYYDLRNISQ-PLHVFN-GHKKAVSYVKFLSN-NELASAS---TDSSLRLWDVKENL-PL--HTF-RGHTNEKNFVGL 521 (597)
Q Consensus 452 ~i~i~d~~~~~~-~~~~~~-~~~~~v~~v~~~~~-~~l~s~~---~d~~v~iwd~~~~~-~~--~~~-~~~~~~v~~v~~ 521 (597)
.|+++++.++.. ....+. ........+.|+|+ .+|+..+ ....|.++|+.++. .. ..+ ........++.|
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence 588888876321 123332 22344678899999 5555443 23458889988752 12 333 233344455554
Q ss_pred eecCCEE-EEEeCC----CcEEEEEccCC-cccc-ccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 522 TVNNEYI-ACGSET----NEVFVYHKAIS-KPAA-SHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 522 s~~g~~l-~~~~~d----~~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
+. |..| +.+..+ ..|..+++.++ .... .+... ....+.++.+. .+.++++...+|..+||-
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~----------~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS----------EDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC----------SSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC----------CCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 43 5544 444333 25666676542 2111 11110 02245666665 334455666777655553
No 371
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.02 E-value=0.0065 Score=57.97 Aligned_cols=234 Identities=8% Similarity=-0.026 Sum_probs=123.0
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
...+.+|.|++ +..++ ++..+.|.. ..+.+ ......... ......+..+.+.+ ++..++++ .+|.|..- .
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG-~tW~~~~~~---~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~ 148 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGG-QSWSQIPLD---PKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-K 148 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTT-SSCEECCCC---TTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-S
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCC-CCceECccc---cCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-c
Confidence 44789999986 44444 445664433 22222 111111100 01223467777765 45555554 45655332 2
Q ss_pred CCCee-eeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEE-EEccCCCcceeee-ccCCCceEEEEecCCCe
Q 042883 409 TTSQS-VMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHY-YDLRNISQPLHVF-NGHKKAVSYVKFLSNNE 485 (597)
Q Consensus 409 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i-~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~ 485 (597)
+.+.. ..........+..+++.+ ++.+++.+.. + .++. +|-. +..-..+ ......+..+.+.+++.
T Consensus 149 DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~-G-------~~~~S~d~g--G~tW~~~~~~~~~~~~~~~~~~~g~ 217 (327)
T 2xbg_A 149 DSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSR-G-------SFYSTWEPG--QTAWEPHNRTTSRRLHNMGFTPDGR 217 (327)
T ss_dssp STTSSEEEEECSCCCCEEEEEECT-TSCEEEEETT-S-------SEEEEECTT--CSSCEEEECCSSSCEEEEEECTTSC
T ss_pred CCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECC-C-------cEEEEeCCC--CCceeECCCCCCCccceeEECCCCC
Confidence 23332 222234455788999998 6677766542 2 2333 3321 1211111 23456788899988877
Q ss_pred EEEeeCCCcEEEEEcCCCcceeeee-C---CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCc
Q 042883 486 LASASTDSSLRLWDVKENLPLHTFR-G---HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVD 561 (597)
Q Consensus 486 l~s~~~d~~v~iwd~~~~~~~~~~~-~---~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 561 (597)
++.++.+|.+++++...++.-..+. . ....+..+.+.+++.+++++. +|.| ++....++.-.......
T Consensus 218 ~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~------ 289 (327)
T 2xbg_A 218 LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK------ 289 (327)
T ss_dssp EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT------
T ss_pred EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC------
Confidence 7777888888877422232211121 1 223478888988887776654 6666 34444443322222110
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCcccEEEEE
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.....+.++.|.+++ .+++++.+|.|.-++
T Consensus 290 --~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 290 --KVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp --TSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred --CCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 013457788887555 466677788776654
No 372
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.01 E-value=0.0011 Score=61.81 Aligned_cols=163 Identities=10% Similarity=0.133 Sum_probs=104.2
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeE-Eee----c--cceeEEEEe---CCCCCceEEeecCCCcc--
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVME-YEE----H--EKRAWSVDF---SCTEPSMLVSGSDDCKV-- 446 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~~l~s~~~d~~~-- 446 (597)
...-+++|++.++.++++.-..|.|..||...+..... +.+ . ...+..|.| .| ++.++++.......
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 34557899985455555555789999999875543322 221 0 124689999 57 57777753210000
Q ss_pred ----cCCCCeEEEEEcc---CCCcceeeec--c-----------CCCceEEEEecCC-CeEEEeeCC-CcEEEEEcCCCc
Q 042883 447 ----GSADHHIHYYDLR---NISQPLHVFN--G-----------HKKAVSYVKFLSN-NELASASTD-SSLRLWDVKENL 504 (597)
Q Consensus 447 ----~~~d~~i~i~d~~---~~~~~~~~~~--~-----------~~~~v~~v~~~~~-~~l~s~~~d-~~v~iwd~~~~~ 504 (597)
.+.+..|..||+. + ++.+.... . -......++..++ +.+++++.. +.|..+|....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred cccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence 1235679999998 5 34433221 1 1135789999999 777878888 88777776533
Q ss_pred ceeeee------CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 505 PLHTFR------GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 505 ~~~~~~------~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
.+..+. ......+.|+++|+|..|++...+|.|..||+..
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 333221 1122467999999999888877799999999873
No 373
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.97 E-value=0.0013 Score=68.15 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEE
Q 042883 492 DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISA 571 (597)
Q Consensus 492 d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 571 (597)
+|.|..||+.+++.+-+..... .+..-.+...|.++++|+.||.++.||..+|+.+..+..+. ...-.-
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~----------g~~a~P 533 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS----------GIVSPP 533 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----------CCCSCC
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC----------CcccCc
Confidence 5789999999998876665332 22222233457788889999999999999999998887642 111122
Q ss_pred EEEccCCCeEE
Q 042883 572 VCWKSDSPTML 582 (597)
Q Consensus 572 v~~~~~~~~l~ 582 (597)
+.|..+|+.++
T Consensus 534 ~~y~~~G~qYv 544 (582)
T 1flg_A 534 ITWEQDGEQYL 544 (582)
T ss_dssp EEEEETTEEEE
T ss_pred eEEEECCEEEE
Confidence 56667776443
No 374
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.97 E-value=0.00055 Score=63.90 Aligned_cols=165 Identities=9% Similarity=0.077 Sum_probs=106.9
Q ss_pred eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCccee-eecc----CC--CceEEEEe---cCCCeEE
Q 042883 418 EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLH-VFNG----HK--KAVSYVKF---LSNNELA 487 (597)
Q Consensus 418 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~-~~~~----~~--~~v~~v~~---~~~~~l~ 487 (597)
........+++|++.++.++++.-. .+.|..||... +.... .+.+ .. ..+..|.| .|++.|+
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~-------~g~V~~~~~~~-~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~ 80 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLY-------KGRIEVYNPKT-QSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLF 80 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETT-------TTEEEEECTTT-CCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred cCcccCCcCccCcCCCCEEEEEecc-------CCEEEEEcCCC-CeEEEEecCCccccCCCcceeeEEEEeccCCCCcEE
Confidence 3444556788998756666666543 45599999874 22222 2221 11 14689999 5776655
Q ss_pred EeeC--------------CCcEEEEEcC---CCcceeeee--C-----------CCCceeEEEEeecCCEEEEEeCC-Cc
Q 042883 488 SAST--------------DSSLRLWDVK---ENLPLHTFR--G-----------HTNEKNFVGLTVNNEYIACGSET-NE 536 (597)
Q Consensus 488 s~~~--------------d~~v~iwd~~---~~~~~~~~~--~-----------~~~~v~~v~~s~~g~~l~~~~~d-~~ 536 (597)
+... +..|..||+. +++.+.... . -......++.+++|+.+++++.. +.
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 5332 5779999999 777765543 1 11247789999999999999888 88
Q ss_pred EEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 537 VFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 537 i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
|..++.... .+..+..... . .......+.|+++|+|..|++...+|.+..+|+.
T Consensus 161 I~rV~pdG~-~~~~~~~~~~-~----~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 161 IARVSADGK-TVSTFAWESG-N----GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECTTSC-CEEEEEECCC-C----SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EEEEeCCCC-EEeeeeecCC-C----cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 877776543 2222211110 0 0113457899999999988887779999998864
No 375
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.91 E-value=0.00093 Score=63.07 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=96.4
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCe---eeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc
Q 042883 390 TKNLIASSDYD-----GIVTIWDVTTSQ---SVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR 459 (597)
Q Consensus 390 ~~~~l~s~~~d-----g~i~iwd~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~ 459 (597)
++.+++.|+.+ ..+.+||+.++. .... +.........+.+ ++.+++.|+.++.. ....+.+||+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~--~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSR--RHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSC--BCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCc--ccceEEEEcCC
Confidence 46777777755 468999988765 3222 1111111122222 56778877765431 23568999987
Q ss_pred CCCcc-eeeeccCCCceEEEEecCCCeEEEeeCC-----CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC
Q 042883 460 NISQP-LHVFNGHKKAVSYVKFLSNNELASASTD-----SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 460 ~~~~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 533 (597)
+.... +..+...... .+++...+..++.|+.+ ..+.+||+.+.+-...-..........+...++.+++.|+.
T Consensus 137 ~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 215 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREG-AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGF 215 (301)
T ss_dssp TTEEEEEEECSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred CCeEEECCCCCCCccc-ceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCC
Confidence 62211 1111111111 12222333556666654 45889998775432221111111111122236777788876
Q ss_pred C-----CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc-----ccEEEEEec
Q 042883 534 T-----NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK-----GAIKVLVLA 596 (597)
Q Consensus 534 d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d-----g~v~iwd~~ 596 (597)
+ ..+.+||+.+.+-...-..+. . ......+.+ ++.+++.|+.+ ..|.+||+.
T Consensus 216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~----~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 216 DGTAHLSSVEAYNIRTDSWTTVTSMTT----P-----RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp CSSSBCCCEEEEETTTTEEEEECCCSS----C-----CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCCcccceEEEEeCCCCcEEECCCCCC----c-----ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC
Confidence 4 468999988765433221111 0 111122333 56777777765 356777764
No 376
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.90 E-value=1.2e-05 Score=84.48 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=65.0
Q ss_pred cCCCCCccccccccccccccccccc-ccccHHHHHHhhcCCCCCCCCCCCCccccccchHHHHHHHHHHHHhh
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTACG-HSFCYTCIFTHLRNKSDCPCCGCHLTCKHIFPNLLLNKLLKKTSARQ 104 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~Cg-H~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n~~~~~~~~~~~~~~ 104 (597)
..+-+++.|||-+++.+|||++|.| +||-|.+|++|+.....||.-|+++...++.||..+...++.+...+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 4666799999999999999999998 69999999999998888999999999999999999999888776444
No 377
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.88 E-value=0.0062 Score=56.20 Aligned_cols=215 Identities=11% Similarity=0.169 Sum_probs=132.8
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEe
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDF 429 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 429 (597)
+..|.|.|+.... .+ ...+ -..-+.-.+| ....+|.-. ...+.|||+++...+..+.- ..+|.--.|
T Consensus 48 ~~~VvIiDl~n~~-------~~-~Rrp--i~AdsAIMnP-~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkW 114 (365)
T 2xzh_A 48 QAQVVIIDMNDPS-------NP-IRRP--ISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKW 114 (365)
T ss_dssp EEEEEEEETTSTT-------SC-EEEE--CCCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEE
T ss_pred CCEEEEEECCCCC-------Cc-cccc--cccceeeeCC-CccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEe
Confidence 3478888988761 11 1111 1112233577 567777766 67899999999988888754 467877888
Q ss_pred CCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC----CceEEEEecCC-CeEEEee-------CCCcEEE
Q 042883 430 SCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK----KAVSYVKFLSN-NELASAS-------TDSSLRL 497 (597)
Q Consensus 430 ~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~v~~v~~~~~-~~l~s~~-------~d~~v~i 497 (597)
-. .+.|+-.+ +..|+-|++.....+.+.+..|. ..|..-..+++ .+++..| -.|.+.+
T Consensus 115 is--~~~L~lVT--------~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 115 IS--LNTVALVT--------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp CS--SSEEEEEE--------SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred cC--CCeEEEEc--------CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 74 33333222 23499999986667888876654 45666667777 5544332 3377899
Q ss_pred EEcCCCcceeeeeCCCCceeEEEEeecCC-----EEEEEeC---CCcEEEEEccCC---cccc-----ccccCCCCCCCc
Q 042883 498 WDVKENLPLHTFRGHTNEKNFVGLTVNNE-----YIACGSE---TNEVFVYHKAIS---KPAA-----SHRFGSDADHVD 561 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~-----~l~~~~~---d~~i~iwd~~~~---~~~~-----~~~~~~~~~~~~ 561 (597)
|... .+.-+.+.||...-.. +-.+|. +++.+.. .+.++|.++... .+.. .+.++.
T Consensus 185 YS~e-r~~sQ~ieGhaa~F~~--~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp------ 255 (365)
T 2xzh_A 185 YSVD-RKVSQPIEGHAASFAQ--FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------ 255 (365)
T ss_dssp EETT-TTEEEEECCSEEEEEE--ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT------
T ss_pred Eeec-ccccceeeeeeeeeEE--EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc------
Confidence 9976 4455666776543222 222222 2333322 368999998543 1111 111111
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+.-.....++..++.-..++.-+.-|.|++||+.|
T Consensus 256 -ea~~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 256 -EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp -TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred -cccCCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 11255677888998888888889999999999875
No 378
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.86 E-value=3.9e-06 Score=76.51 Aligned_cols=48 Identities=21% Similarity=0.540 Sum_probs=38.6
Q ss_pred CCCcccccccccccc----cc----cccccccccHHHHHHhhcCC-----------CCCCCCCCCCc
Q 042883 36 DRDTLCPICKQLMTD----AF----MTACGHSFCYTCIFTHLRNK-----------SDCPCCGCHLT 83 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~----P~----~l~CgH~FC~~Cl~~~~~~~-----------~~CP~Cr~~~~ 83 (597)
+....|+||++++.+ |. ..+|||.|...||.+|+.+. +.||.||+...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 445779999999997 41 24699999999999999742 24999999775
No 379
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=0.0015 Score=65.30 Aligned_cols=212 Identities=10% Similarity=0.017 Sum_probs=117.5
Q ss_pred ceeEEEEecC-CCCEEEEeeCCCcEEEEeCCCCeeeeEEeec---cceeEEEEe-------CCCCCc-eEEeecCCCccc
Q 042883 380 KLSCLSWNKY-TKNLIASSDYDGIVTIWDVTTSQSVMEYEEH---EKRAWSVDF-------SCTEPS-MLVSGSDDCKVG 447 (597)
Q Consensus 380 ~i~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~-~l~s~~~d~~~~ 447 (597)
....|+|+|. .++++++....+.|++.|+.++.....+... ...+..++| ++ ++. ++++...++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~- 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKG- 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTG-
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCc-
Confidence 4678999983 4555555554567999998876665444321 235899999 98 555 55554432110
Q ss_pred CCCCeEEEEEccCCCcce-----eeeccCCCceEEEEecCC-Ce-EEEeeCCCcEEEEEcC-------CCcc--------
Q 042883 448 SADHHIHYYDLRNISQPL-----HVFNGHKKAVSYVKFLSN-NE-LASASTDSSLRLWDVK-------ENLP-------- 505 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~~~~-----~~~~~~~~~v~~v~~~~~-~~-l~s~~~d~~v~iwd~~-------~~~~-------- 505 (597)
.....|.+++....+... ..+.. ......++++|+ +. +++...++.|..||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 012236677643311221 12221 123457788995 55 4555677789999987 5543
Q ss_pred ---eeee-e-CCCCceeEEEEeecCCE-EEEEeCCCcEEEEEccC--Cccc--cccccC-CCCCCCcC---cCCCcceE-
Q 042883 506 ---LHTF-R-GHTNEKNFVGLTVNNEY-IACGSETNEVFVYHKAI--SKPA--ASHRFG-SDADHVDD---DMGSYFIS- 570 (597)
Q Consensus 506 ---~~~~-~-~~~~~v~~v~~s~~g~~-l~~~~~d~~i~iwd~~~--~~~~--~~~~~~-~~~~~~~~---~~h~~~i~- 570 (597)
...+ . +.....+.++|+|+|++ +++-+..+.|+.++... +... ..+.-. ......++ ...-....
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 1121 1 22345679999999995 44455678899876543 2211 111100 00000000 01122355
Q ss_pred EEEEc-------cCCCeEEEecCcccEEEEE
Q 042883 571 AVCWK-------SDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 571 ~v~~~-------~~~~~l~s~~~dg~v~iwd 594 (597)
.++.. ++|.++++-..++.|+.++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~ 407 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence 45554 5677778877888888876
No 380
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.76 E-value=0.0013 Score=62.17 Aligned_cols=188 Identities=12% Similarity=0.080 Sum_probs=94.1
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCeeeeEE--eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCC
Q 042883 390 TKNLIASSDYD-----GIVTIWDVTTSQSVMEY--EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNIS 462 (597)
Q Consensus 390 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~ 462 (597)
++.+++.|+.+ ..+.+||..+.+....- .........+.+ ++.+++.|+.++.. .-..+.+||+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~--~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGST--GLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSC--EEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCc--cCceEEEEeCCCCe
Confidence 46777787754 35889998876543221 111111122222 56777777754321 12458889987522
Q ss_pred cc-eeeeccCCCceEEEEecCCCeEEEeeCC-------CcEEEEEcCCCcceee--eeCCCCceeEEEEeecCCEEEEEe
Q 042883 463 QP-LHVFNGHKKAVSYVKFLSNNELASASTD-------SSLRLWDVKENLPLHT--FRGHTNEKNFVGLTVNNEYIACGS 532 (597)
Q Consensus 463 ~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~--~~~~~~~v~~v~~s~~g~~l~~~~ 532 (597)
.. +..+...... .+++...+..++.|+.+ ..+.+||+.+.+-... +....... ++ ..-++.+++.||
T Consensus 136 W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG 212 (302)
T 2xn4_A 136 WFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GV-GVLNNLLYAVGG 212 (302)
T ss_dssp EEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECC
T ss_pred EeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cE-EEECCEEEEECC
Confidence 11 1111111111 22233333555666542 3588999887543221 11111111 22 223677788887
Q ss_pred CC-----CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcc-----cEEEEEec
Q 042883 533 ET-----NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKG-----AIKVLVLA 596 (597)
Q Consensus 533 ~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg-----~v~iwd~~ 596 (597)
.+ ..+.+||..+.+-........ . ......+.+ ++.+++.|+.++ .|.+||+.
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~----~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMNM----C-----RRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCSS----C-----CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCCC----c-----cccCeEEEE--CCEEEEECCcCCCcccccEEEEcCC
Confidence 64 368999988765433222111 0 111112222 567777777654 47888865
No 381
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.72 E-value=0.016 Score=55.69 Aligned_cols=215 Identities=11% Similarity=0.168 Sum_probs=134.5
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEe
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDF 429 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 429 (597)
+..|.|.|+..+. .+ ...+ -..-+.-.+| ..+.++.-. ...+.|||+++...+..+.- ..+|.--.|
T Consensus 47 ~~~vvIiDl~~~~-------~~-~rrp--i~AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkW 113 (494)
T 1bpo_A 47 QAQVVIIDMNDPS-------NP-IRRP--ISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKW 113 (494)
T ss_dssp CCEEEEEETTSTT-------SC-EEEE--CCCSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEE
T ss_pred CCeEEEEECCCCC-------cc-eecc--cccceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEe
Confidence 3478888887751 11 1111 1122344677 567777765 67999999999988888754 456777777
Q ss_pred CCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC----CceEEEEecCC-CeEEEee-------CCCcEEE
Q 042883 430 SCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK----KAVSYVKFLSN-NELASAS-------TDSSLRL 497 (597)
Q Consensus 430 ~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~v~~v~~~~~-~~l~s~~-------~d~~v~i 497 (597)
-. .+.++-.+ +..|+-|++.....+++.|..|. ..|..-..+++ .+++..| -.|.+.+
T Consensus 114 is--~~~l~lVT--------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 114 IS--LNTVALVT--------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp EE--TTEEEEEC--------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred cC--CCeEEEEc--------CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 63 33333332 33499999986567888887653 45666677777 6654332 3477899
Q ss_pred EEcCCCcceeeeeCCCCceeEEEEeecC-----CEEEEEeC---CCcEEEEEccCC---ccc-----cccccCCCCCCCc
Q 042883 498 WDVKENLPLHTFRGHTNEKNFVGLTVNN-----EYIACGSE---TNEVFVYHKAIS---KPA-----ASHRFGSDADHVD 561 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v~~s~~g-----~~l~~~~~---d~~i~iwd~~~~---~~~-----~~~~~~~~~~~~~ 561 (597)
|... .+.-+.+.||...-..+.+ +| .+++.+.. .+.++|.++... .+. ..+.++.
T Consensus 184 YS~e-r~~sQ~ieGhaa~F~~~~~--~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------ 254 (494)
T 1bpo_A 184 YSVD-RKVSQPIEGHAASFAQFKM--EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------ 254 (494)
T ss_dssp EEST-TCCEEEECCSEEEEEEEEC--TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------
T ss_pred eecc-ccccchheeeeeeeEEEec--CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------
Confidence 9976 4455667777654333322 32 23333333 378999998543 111 1111111
Q ss_pred CcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 562 DDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 562 ~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
+.-.....++..++.-..++.-+.-|.|++||+.+
T Consensus 255 -e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 255 -EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp -TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred -ccccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence 11255677899999888898999999999999865
No 382
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.71 E-value=0.0094 Score=56.84 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=102.9
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEE-EeC
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTI-WDV 408 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~i-wd~ 408 (597)
+.+..+.+.+++..++++. +|.| |....+..... .........+..+++.+ ++.+++.+. +|.+.. +|-
T Consensus 122 ~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~-----~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~ 191 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQ-----ALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP 191 (327)
T ss_dssp SCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEE-----EEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECT
T ss_pred CCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCE-----EeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCC
Confidence 4578888877777666554 5543 33222211111 11122345688999998 566666664 455444 332
Q ss_pred CCCeeeeEE-eeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec----cCCCceEEEEecCC
Q 042883 409 TTSQSVMEY-EEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN----GHKKAVSYVKFLSN 483 (597)
Q Consensus 409 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~v~~~~~ 483 (597)
.+..-..+ ......+..+.+.+ ++.+++.+. +|.+++.+... +..-..+. .+...+.++.+.++
T Consensus 192 -gG~tW~~~~~~~~~~~~~~~~~~-~g~~~~~~~--------~G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 192 -GQTAWEPHNRTTSRRLHNMGFTP-DGRLWMIVN--------GGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp -TCSSCEEEECCSSSCEEEEEECT-TSCEEEEET--------TTEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred -CCCceeECCCCCCCccceeEECC-CCCEEEEeC--------CceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCC
Confidence 12211111 23456788899988 566655543 33466653221 11111111 12235888999888
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeee---CCCCceeEEEEeecCCEEEEEeCCCcEEEEE
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFR---GHTNEKNFVGLTVNNEYIACGSETNEVFVYH 541 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 541 (597)
+.+++++.+|.| ++....++--..+. .....++.+.|.+++. +++++.+|.|.-++
T Consensus 261 ~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 261 NEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 666666667877 34444454333333 2235678899986555 55666788877665
No 383
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.71 E-value=0.037 Score=52.61 Aligned_cols=245 Identities=11% Similarity=0.033 Sum_probs=128.6
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC---CCCEEEEe--eCCCcE
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY---TKNLIASS--DYDGIV 403 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~---~~~~l~s~--~~dg~i 403 (597)
-...+.|+|.|+|.++++-...|.|++++..++..... ...+............|+++|+ ++.+.++- ..++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v-~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTEL-GEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-EECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeee-cccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 44678999999998777766589999987654311100 0001111234567899999983 24343332 234566
Q ss_pred EEEeCCCC----------eee-eEEe-eccceeEEEEeCCCCCceEEeecCCCcc------cCCCCeEEEEEccCC---C
Q 042883 404 TIWDVTTS----------QSV-MEYE-EHEKRAWSVDFSCTEPSMLVSGSDDCKV------GSADHHIHYYDLRNI---S 462 (597)
Q Consensus 404 ~iwd~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~~------~~~d~~i~i~d~~~~---~ 462 (597)
.-|.+..+ +.+ ..+. ........|+|.| ++.++++.++.+.. ....|.|.-++.... .
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 66665441 111 1121 1112345799999 77777776543322 112355555555421 0
Q ss_pred c---ceeee-ccCCCceEEEEecCCCeEEEeeC--CCcEEEEEcCCCc------------------ceeeeeCCCCceeE
Q 042883 463 Q---PLHVF-NGHKKAVSYVKFLSNNELASAST--DSSLRLWDVKENL------------------PLHTFRGHTNEKNF 518 (597)
Q Consensus 463 ~---~~~~~-~~~~~~v~~v~~~~~~~l~s~~~--d~~v~iwd~~~~~------------------~~~~~~~~~~~v~~ 518 (597)
. ....+ .+|. ....++|+|++.|.++-. |+.=.|.-+..+. ++..+..+......
T Consensus 189 nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 189 NPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp CSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 0 11122 2343 457899999866665443 3222222222211 22233222234567
Q ss_pred EEEeecCCEEEEEeCCCcEEEEEccCCccccc-cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEec
Q 042883 519 VGLTVNNEYIACGSETNEVFVYHKAISKPAAS-HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 519 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
++|. +|..++..-..+.|....+.....+.. ..+-. +....+.+|+..|||.++++.+
T Consensus 268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~--------~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLE--------GEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEEST--------TTSSCEEEEEEEETTEEEEEEC
T ss_pred eEEE-cCceeeccccCCEEEEEEecCCceecceEEeec--------CCCCCccEEEECCCCcEEEEEc
Confidence 7775 466666555566777777665432211 01100 0146799999999998776643
No 384
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.70 E-value=0.0046 Score=58.37 Aligned_cols=231 Identities=12% Similarity=0.001 Sum_probs=111.6
Q ss_pred CEEEEeeC--CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC----CcEEEEeCCCCeeee
Q 042883 342 ELFASAGV--SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD----GIVTIWDVTTSQSVM 415 (597)
Q Consensus 342 ~~l~t~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~ 415 (597)
.+++.|+. ...+.+||..+....... ..+. ..... +++.. ++.+++.|+.+ ..+.+||+.++....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIR-CPFE----KRRDA-ACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECC-CCSC----CCBSC-EEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCC-CCCc----cccee-EEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence 34555654 356888888765211110 0111 11111 22222 46777787755 578899998875433
Q ss_pred EEee--ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-eeeeccCCCceEEEEecCCCeEEEeeC-
Q 042883 416 EYEE--HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LHVFNGHKKAVSYVKFLSNNELASAST- 491 (597)
Q Consensus 416 ~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~- 491 (597)
.-.. .......+.+ ++.+++.|+.+.. ......+.+||+.+.... +..+...... .+++...+..++.|+.
T Consensus 85 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 85 KLGPPTPRDSLAACAA---EGKIYTSGGSEVG-NSALYLFECYDTRTESWHTKPSMLTQRCS-HGMVEANGLIYVCGGSL 159 (306)
T ss_dssp EECCSSCCBSCEEEEE---TTEEEEECCBBTT-BSCCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEE
T ss_pred CCCCCccccceeEEEE---CCEEEEECCCCCC-CcEeeeEEEEeCCCCceEeCCCCcCCcce-eEEEEECCEEEEECCCC
Confidence 2211 1111122222 5677777775411 123456899998862111 1111111111 1222233345556653
Q ss_pred --------CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC-----CcEEEEEccCCccccccccCCCCC
Q 042883 492 --------DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET-----NEVFVYHKAISKPAASHRFGSDAD 558 (597)
Q Consensus 492 --------d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~ 558 (597)
-..+.+||+.+.+-...-..........+..-++.+++.||.+ ..+.+||+.+.+-...-..+.
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--- 236 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--- 236 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC---
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC---
Confidence 3458899988754222211111111111222367777777654 468899988765333221111
Q ss_pred CCcCcCCCcceEEEEEccCCCeEEEecCc-----ccEEEEEec
Q 042883 559 HVDDDMGSYFISAVCWKSDSPTMLTANRK-----GAIKVLVLA 596 (597)
Q Consensus 559 ~~~~~~h~~~i~~v~~~~~~~~l~s~~~d-----g~v~iwd~~ 596 (597)
. ......+.+ ++.+++.|+.+ ..+.+||+.
T Consensus 237 -~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 237 -K-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp -C-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred -C-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 0 111223333 56777777754 457777764
No 385
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.53 E-value=0.013 Score=55.87 Aligned_cols=171 Identities=8% Similarity=0.117 Sum_probs=97.0
Q ss_pred CCCcEEEEeCCCC--ee-eeEEee-----ccceeEEEEeCCC-CC--ceEEeecCCCcccCCCCeEEEEEccCCCcce--
Q 042883 399 YDGIVTIWDVTTS--QS-VMEYEE-----HEKRAWSVDFSCT-EP--SMLVSGSDDCKVGSADHHIHYYDLRNISQPL-- 465 (597)
Q Consensus 399 ~dg~i~iwd~~~~--~~-~~~~~~-----~~~~v~~~~~~~~-~~--~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~-- 465 (597)
.+|.|.+||..+. +. ...+.+ ..-....+.+.++ ++ .++++-... .+..|.+|++...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-----~~s~ielf~~d~~~~~~~~ 155 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-----SSSTVEVFKFQEEEKSLLH 155 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-----TCCEEEEEEEETTTTEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-----CCCeEEEEEEECCCCEEEE
Confidence 6899999998732 21 112222 1235667776542 23 244443321 24568898887533322
Q ss_pred -eeeccC-CCceEEEEecCCCeEEEeeC------------------CCcEEEEEcCCCcceeeeeCCCCceeEEEEeecC
Q 042883 466 -HVFNGH-KKAVSYVKFLSNNELASAST------------------DSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNN 525 (597)
Q Consensus 466 -~~~~~~-~~~v~~v~~~~~~~l~s~~~------------------d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g 525 (597)
..+.+. -...+.+++.+++.|++++. .|.|.-||. ++ +..+...-...+.++|+|||
T Consensus 156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg 232 (355)
T 3sre_A 156 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDG 232 (355)
T ss_dssp EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTS
T ss_pred EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCC
Confidence 223322 24678999999976655443 234555554 33 22332223456899999999
Q ss_pred CEEEEE-eCCCcEEEEEccC-CccccccccCCCCCCCcCcCCCcceEEEEEcc-CCCeEEEecCc
Q 042883 526 EYIACG-SETNEVFVYHKAI-SKPAASHRFGSDADHVDDDMGSYFISAVCWKS-DSPTMLTANRK 587 (597)
Q Consensus 526 ~~l~~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~~~d 587 (597)
+.|+++ +..+.|+.|++.. +.......+.. ....-.+++++ +|.+.+++..+
T Consensus 233 ~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----------~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----------DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----------SSEEEEEEECTTTCCEEEEEESC
T ss_pred CEEEEEeCCCCeEEEEEECCCCcEecCEEEeC----------CCCCceEEEeCCCCcEEEEecCC
Confidence 877665 4578999999864 33221111110 34577889998 58887766533
No 386
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.50 E-value=0.0055 Score=57.91 Aligned_cols=230 Identities=10% Similarity=-0.004 Sum_probs=111.5
Q ss_pred CCCEEEEeeCC----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeC----C-----CcEEEE
Q 042883 340 DDELFASAGVS----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDY----D-----GIVTIW 406 (597)
Q Consensus 340 ~~~~l~t~~~d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~----d-----g~i~iw 406 (597)
++.+++.|+.+ ..+.+||..+....... ..+... .. .+++.. ++.+++.|+. + ..+.+|
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r----~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~ 95 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA-DLQVPR----SG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCY 95 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECC-CCSSCC----BS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECC-CCCccc----cc-ceEEEE--CCEEEEECCCcCCCCCCeecceEEEE
Confidence 45666667632 46888887765211110 011111 11 122222 4677777765 2 468899
Q ss_pred eCCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-eeeeccCCCceEEEEecCC
Q 042883 407 DVTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LHVFNGHKKAVSYVKFLSN 483 (597)
Q Consensus 407 d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~ 483 (597)
|+.++..... +.........+.+ ++.+++.|+.++. .....+.+||+.+.... +..+....... +++...+
T Consensus 96 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~ 169 (308)
T 1zgk_A 96 NPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGC--IHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLNR 169 (308)
T ss_dssp ETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETT--EECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETT
T ss_pred CCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCC--cccccEEEECCCCCeEeECCCCCccccce-EEEEECC
Confidence 9887654322 1111111122222 5677777775432 12345889998762111 11111111111 2222334
Q ss_pred CeEEEeeCC-----CcEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEEeCC-----CcEEEEEccCCcccccc
Q 042883 484 NELASASTD-----SSLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACGSET-----NEVFVYHKAISKPAASH 551 (597)
Q Consensus 484 ~~l~s~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~~~~~~~ 551 (597)
..++.|+.+ ..+.+||+.+.+-.. .+.........+. -++.+++.|+.+ ..+.+||+.+.+-....
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 556667654 458899987654221 1111111112222 267777888765 56999998876543322
Q ss_pred ccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCc-----ccEEEEEec
Q 042883 552 RFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRK-----GAIKVLVLA 596 (597)
Q Consensus 552 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~d-----g~v~iwd~~ 596 (597)
..+. . ......+.+ ++.+++.|+.+ ..|.+||+.
T Consensus 248 ~~p~----~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 248 PMKH----R-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp CCSS----C-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCCC----C-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC
Confidence 2111 0 111122222 56777777754 346777764
No 387
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.49 E-value=0.0063 Score=67.43 Aligned_cols=202 Identities=13% Similarity=0.211 Sum_probs=124.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC-ee
Q 042883 335 IEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS-QS 413 (597)
Q Consensus 335 i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~ 413 (597)
.-.+|..+.||.-. ..++.|||+.+. ...........|.--.|-. .+.|+..+ +..|+-|++.+. .+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k--------~klks~~~~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P 138 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQP 138 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHh--------hhhcccccCCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCcc
Confidence 34677777776664 788999999875 2222223345676667764 55565555 468999999643 34
Q ss_pred eeEEeec----cceeEEEEeCCCCCceEE-eec--CCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCC---
Q 042883 414 VMEYEEH----EKRAWSVDFSCTEPSMLV-SGS--DDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSN--- 483 (597)
Q Consensus 414 ~~~~~~~----~~~v~~~~~~~~~~~~l~-s~~--~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--- 483 (597)
+..|..| ...|..-..++ +..+++ +|- .++. -.|.+.+|.... +....+.||.+....+.....
T Consensus 139 ~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~---v~G~mQLyS~er--~~sQ~iegha~~F~~~~~~~~~~~ 212 (1630)
T 1xi4_A 139 VKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNR---VVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEE 212 (1630)
T ss_pred HHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCc---ccceeeeeeccc--ccchhhhHhHhhhheeccCCCCCC
Confidence 3334333 34566677777 444444 432 2333 478999999884 555667777766555544322
Q ss_pred CeEEE-ee---CCCcEEEEEcCCC---cceee------e-eC--CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCcc
Q 042883 484 NELAS-AS---TDSSLRLWDVKEN---LPLHT------F-RG--HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKP 547 (597)
Q Consensus 484 ~~l~s-~~---~d~~v~iwd~~~~---~~~~~------~-~~--~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 547 (597)
..+++ +. ..+.++|.++... .+... + .. -.....++..++.-..+..-+.-|.|++||+.++..
T Consensus 213 ~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 22332 21 2378999998542 11111 1 11 122334567777767788888899999999999998
Q ss_pred ccccccC
Q 042883 548 AASHRFG 554 (597)
Q Consensus 548 ~~~~~~~ 554 (597)
+......
T Consensus 293 i~~~ris 299 (1630)
T 1xi4_A 293 IYMNRIS 299 (1630)
T ss_pred hhhcccc
Confidence 8776654
No 388
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.46 E-value=0.017 Score=54.67 Aligned_cols=191 Identities=13% Similarity=0.024 Sum_probs=91.4
Q ss_pred EEEeeCCCcEEEEecccCccCCccCCCCceEecC--CCceeEEEEecCCCCEEEEeeC----C-------CcEEEEeCCC
Q 042883 344 FASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPT--RSKLSCLSWNKYTKNLIASSDY----D-------GIVTIWDVTT 410 (597)
Q Consensus 344 l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~~l~s~~~----d-------g~i~iwd~~~ 410 (597)
++.|+ ..+.+||..+..... ..... ...-.+++. . ++.+++.|+. + ..+.+||..+
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-------~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-------ASLSSQVPKNHVSLVT-K-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-------EECCCCSCSSEEEEEC-T-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred EEEcC--CceEEECCCCCeEec-------CCCCCCCCccceEEEE-E-CCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence 44454 568889987762111 11111 111122222 2 5778888873 1 1277889887
Q ss_pred CeeeeEEeeccce-eEEEEeCCCCCceEEeecCCCc-ccCCCCeEEEEEccCCCc-ceeeeccCCCceEEEEecCCCeEE
Q 042883 411 SQSVMEYEEHEKR-AWSVDFSCTEPSMLVSGSDDCK-VGSADHHIHYYDLRNISQ-PLHVFNGHKKAVSYVKFLSNNELA 487 (597)
Q Consensus 411 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~-~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~l~ 487 (597)
++....-...... -.+++.. ++.+++.|+.+.. -......+.+||+.+... .+..+...... .+++...+..++
T Consensus 77 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv 153 (315)
T 4asc_A 77 SEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYV 153 (315)
T ss_dssp TEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEE
T ss_pred CeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEE
Confidence 6543211111111 1122222 5677777774310 011345689999876211 11111111111 222333345666
Q ss_pred EeeC-C-----CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC-----cEEEEEccCCccc
Q 042883 488 SAST-D-----SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN-----EVFVYHKAISKPA 548 (597)
Q Consensus 488 s~~~-d-----~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-----~i~iwd~~~~~~~ 548 (597)
.|+. + ..+.+||+.+.+-...-..........+..-++.+++.||.++ .+.+||+.+.+-.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 7765 2 4689999887532221111111111112223777788887654 5888998776443
No 389
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.014 Score=54.81 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=97.2
Q ss_pred CCCEEEEeeCC-----CcEEEEecccCccC-CccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC-----CcEEEEeC
Q 042883 340 DDELFASAGVS-----RRIKIFEFSSVVNE-PRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD-----GIVTIWDV 408 (597)
Q Consensus 340 ~~~~l~t~~~d-----~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d-----g~i~iwd~ 408 (597)
++.+++.|+.+ ..+.+||+.+.... ..... .......-.+++.. ++.+++.|+.+ ..+.+||+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA----PMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC----CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC----CCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcC
Confidence 56677777754 46888888765200 11000 00111111122222 46777777654 35889998
Q ss_pred CCCeeeeEEeeccc-eeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee--eccCCCceEEEEecCCCe
Q 042883 409 TTSQSVMEYEEHEK-RAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV--FNGHKKAVSYVKFLSNNE 485 (597)
Q Consensus 409 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~v~~~~~~~ 485 (597)
.++.....-..... .-.+++.. ++.+++.|+.++.. ....+.+||+.+ ..-... +...... .++....+..
T Consensus 136 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~--~~~~~~~~d~~~-~~W~~~~~~p~~r~~-~~~~~~~~~i 209 (301)
T 2vpj_A 136 NIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLN--ILNSVEKYDPHT-GHWTNVTPMATKRSG-AGVALLNDHI 209 (301)
T ss_dssp TTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSC--BCCCEEEEETTT-TEEEEECCCSSCCBS-CEEEEETTEE
T ss_pred CCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCc--ccceEEEEeCCC-CcEEeCCCCCccccc-ceEEEECCEE
Confidence 87654432211111 11122222 56777877765431 235689999876 221111 1111111 2223333456
Q ss_pred EEEeeCC-----CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC-----CcEEEEEccCCc
Q 042883 486 LASASTD-----SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET-----NEVFVYHKAISK 546 (597)
Q Consensus 486 l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~~ 546 (597)
++.|+.+ ..+.+||+.+.+-...-..........+..-++.+++.|+.+ ..|.+||..+.+
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 6777764 468999998754322211111111112223367777888765 357788876654
No 390
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.29 E-value=0.069 Score=57.56 Aligned_cols=227 Identities=10% Similarity=0.115 Sum_probs=129.2
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeC
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDV 408 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~ 408 (597)
.+.|++|.-+.+|. |-.|+.+| +..||-.... ... ... ......|.++.... ...|..|+.+| +..||.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~-~~~--~~~---~~~~~~i~~i~~d~--~g~lWigT~~G-l~~yd~ 89 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ-QHF--TYG---ENNNTRIYCGVIID--NTYLYMGTDNG-ILVYNY 89 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE-ECS--CTT---STTSSCEEEEEEET--TTEEEEEETTE-EEEEET
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceE-EEE--ccC---CCCCceEEEEEEcC--CCcEEEEeCCC-eEEEeC
Confidence 56799999998885 55566666 5566632210 000 000 01235688877664 45677777554 789998
Q ss_pred CCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-----cCCCceEEEEecCC
Q 042883 409 TTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN-----GHKKAVSYVKFLSN 483 (597)
Q Consensus 409 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v~~v~~~~~ 483 (597)
.+.............|.++... ++.+.+... + .+..||..+ . .+..+. .....|.++....+
T Consensus 90 ~~~~f~~~~~~~~~~i~~i~~~--~g~lWigt~-~--------Gl~~~~~~~-~-~~~~~~~~~~~l~~~~i~~i~~d~~ 156 (758)
T 3ott_A 90 RADRYEQPETDFPTDVRTMALQ--GDTLWLGAL-N--------GLYTYQLQS-R-KLTSFDTRRNGLPNNTIYSIIRTKD 156 (758)
T ss_dssp TTTEECCCSCCCCSCEEEEEEE--TTEEEEEET-T--------EEEEEETTT-C-CEEEECHHHHCCSCSCEEEEEECTT
T ss_pred CCCEEECcccCCCceEEEEEec--CCcEEEEcC-C--------cceeEeCCC-C-eEEEeccCCCCcCCCeEEEEEEcCC
Confidence 7765432111122346666543 555555432 2 278888764 2 233331 12346888887777
Q ss_pred CeEEEeeCCCcEEEEEcCCCcceeeee--C----CCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCC
Q 042883 484 NELASASTDSSLRLWDVKENLPLHTFR--G----HTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDA 557 (597)
Q Consensus 484 ~~l~s~~~d~~v~iwd~~~~~~~~~~~--~----~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 557 (597)
+.|..++.+ -|..||..+++.. .+. . ....|.++..+.++..|..|+. +-|..||..+++........
T Consensus 157 g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--- 230 (758)
T 3ott_A 157 NQIYVGTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--- 230 (758)
T ss_dssp CCEEEEETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE---
T ss_pred CCEEEEeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC---
Confidence 777777765 4778887765432 221 1 1224777877777776666654 45888887765433221111
Q ss_pred CCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 558 DHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 558 ~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
...|.++....+|.+.+.. .+| +.+++.
T Consensus 231 --------~~~i~~i~~d~~g~lWigT-~~G-l~~~~~ 258 (758)
T 3ott_A 231 --------NNSIKSLALDGNGDLLAGT-DNG-LYVYHN 258 (758)
T ss_dssp --------EEEEEEEEECTTCCEEEEE-TTE-EEEECC
T ss_pred --------CCeEEEEEEcCCCCEEEEe-CCc-eeEEec
Confidence 3458888888888766554 444 555653
No 391
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.29 E-value=0.098 Score=58.59 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=105.2
Q ss_pred cEEEEeCCCCeeeeEEee-ccceeEEE---EeCCCCCceEEeecCC---CcccCCCCeEEEEEccCCCcceeee--ccCC
Q 042883 402 IVTIWDVTTSQSVMEYEE-HEKRAWSV---DFSCTEPSMLVSGSDD---CKVGSADHHIHYYDLRNISQPLHVF--NGHK 472 (597)
Q Consensus 402 ~i~iwd~~~~~~~~~~~~-~~~~v~~~---~~~~~~~~~l~s~~~d---~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~ 472 (597)
.|+++|..+.+.+..+.- ....+.++ .|......+++.|..- +......|.|++|++.. ++ +..+ ....
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~-~k-L~lv~~~~v~ 885 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD-GK-LQTVAEKEVK 885 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET-TE-EEEEEEEEES
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC-CE-EEEEEEEEcC
Confidence 466777766665554431 22334444 4443234677766521 00112468899999974 32 2222 2245
Q ss_pred CceEEEEecCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC--Cccccc
Q 042883 473 KAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI--SKPAAS 550 (597)
Q Consensus 473 ~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~--~~~~~~ 550 (597)
++|++++--. ++|++|- ...|++||+...+.+..-..+-..+..+.....|+++++|..-..|.++..+. ++....
T Consensus 886 g~v~al~~~~-g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 886 GAVYSMVEFN-GKLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp SCEEEEEEET-TEEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred CcCEEEeeeC-CEEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 7888887443 5655544 47899999987654441111111233444445688999998877777765443 222221
Q ss_pred cccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 551 HRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 551 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
-. +.+..+++++.|-.+ ..++.++.+|.|.++..++
T Consensus 964 a~----------D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 964 AR----------DFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EE----------CCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred Ee----------ecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 11 123677899988754 4677788999999987653
No 392
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.26 E-value=0.0096 Score=56.01 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=97.3
Q ss_pred CCCEEEEeeCC-----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC-----cEEEEeCC
Q 042883 340 DDELFASAGVS-----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG-----IVTIWDVT 409 (597)
Q Consensus 340 ~~~~l~t~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~ 409 (597)
++.+++.|+.+ ..+.+||..+....... . ......-.+++.. ++.+++.|+.++ .+.+||+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~-----~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~ 132 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-N-----MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIK 132 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC-C-----CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCC-C-----CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCC
Confidence 66777777754 35788887765211110 0 0111111122222 467777777653 57788988
Q ss_pred CCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-eeeeccCCCceEEEEecCCCeE
Q 042883 410 TSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LHVFNGHKKAVSYVKFLSNNEL 486 (597)
Q Consensus 410 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~~l 486 (597)
++..... +...... .+++.. ++.+++.|+.++.-...-..+.+||+.+.... +..+...... .+++...+..+
T Consensus 133 ~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iy 208 (302)
T 2xn4_A 133 SNEWFHVAPMNTRRSS-VGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVLNNLLY 208 (302)
T ss_dssp TTEEEEECCCSSCCBS-CEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEE
T ss_pred CCeEeecCCCCCcccC-ceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccEEEECCEEE
Confidence 7654332 1111111 122222 56777777754421011345899998762111 1111111111 22333344566
Q ss_pred EEeeCC-----CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCC-----cEEEEEccCCcc
Q 042883 487 ASASTD-----SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETN-----EVFVYHKAISKP 547 (597)
Q Consensus 487 ~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-----~i~iwd~~~~~~ 547 (597)
+.|+.+ ..+.+||+.+.+-...-..........+...++.+++.|+.++ .+.+||..+.+-
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 777654 3688999887543221111111111112233777888887653 489999877653
No 393
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.22 E-value=0.034 Score=53.49 Aligned_cols=147 Identities=8% Similarity=0.068 Sum_probs=78.3
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCee--eeEEe---eccceeEEEEeCCC---CCceEEeecCCCcccCCC
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS--VMEYE---EHEKRAWSVDFSCT---EPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d~~~~~~d 450 (597)
....+++|.| ++.++++ ..+|.|.+++ ++.. +..+. ........|+|+|+ ++.++++...... ...
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~--~~~ 104 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG--GLR 104 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT--SSE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC--CCc
Confidence 4567899999 6665544 5679999998 3432 11111 12346889999994 3555555432100 001
Q ss_pred CeEEEEEccCCC----c-ceeeec---cCCCceEEEEecCCCeEEEeeCC--------------CcEEEEEcCCC-----
Q 042883 451 HHIHYYDLRNIS----Q-PLHVFN---GHKKAVSYVKFLSNNELASASTD--------------SSLRLWDVKEN----- 503 (597)
Q Consensus 451 ~~i~i~d~~~~~----~-~~~~~~---~~~~~v~~v~~~~~~~l~s~~~d--------------~~v~iwd~~~~----- 503 (597)
+.|..|+..... . .+..+. +.......++|.|++.|+.+..+ |.|.-+|....
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 447778776310 1 111122 11123468999999665554322 45655665420
Q ss_pred -------cceeee-eCCCCceeEEEEee-cCCEEEEEe
Q 042883 504 -------LPLHTF-RGHTNEKNFVGLTV-NNEYIACGS 532 (597)
Q Consensus 504 -------~~~~~~-~~~~~~v~~v~~s~-~g~~l~~~~ 532 (597)
.....+ .++. ....++|+| +|.++++-.
T Consensus 185 pf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred cccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence 011111 2332 246789999 677665543
No 394
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.19 E-value=0.02 Score=54.28 Aligned_cols=152 Identities=9% Similarity=-0.003 Sum_probs=73.2
Q ss_pred CCCEEEEeeC----CC-------cEEEEeCCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEE
Q 042883 390 TKNLIASSDY----DG-------IVTIWDVTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYY 456 (597)
Q Consensus 390 ~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~ 456 (597)
++.+++.|+. ++ .+.+||..+++.... +...... .+++.. ++.+++.|+.+..-......+.+|
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccceEEEE
Confidence 5777888773 12 177888877654322 1111111 122222 567777776531101122458889
Q ss_pred EccCCCccee--eeccCCCceEEEEecCCCeEEEeeC------CCcEEEEEcCCCcceee--eeCCCCceeEEEEeecCC
Q 042883 457 DLRNISQPLH--VFNGHKKAVSYVKFLSNNELASAST------DSSLRLWDVKENLPLHT--FRGHTNEKNFVGLTVNNE 526 (597)
Q Consensus 457 d~~~~~~~~~--~~~~~~~~v~~v~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~--~~~~~~~v~~v~~s~~g~ 526 (597)
|+.+. .-.. .+...... .+++...+..++.|+. -..+.+||+.+.+-... +...... .++ ..-++.
T Consensus 133 d~~~~-~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~-~~~~~~ 208 (318)
T 2woz_A 133 DPVAA-KWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGV-AIHKGK 208 (318)
T ss_dssp ETTTT-EEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTE
T ss_pred eCCCC-CEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceE-EEECCE
Confidence 98752 2111 11111011 1222233345566653 23589999887543221 1111111 122 223677
Q ss_pred EEEEEeCC-----CcEEEEEccCCccc
Q 042883 527 YIACGSET-----NEVFVYHKAISKPA 548 (597)
Q Consensus 527 ~l~~~~~d-----~~i~iwd~~~~~~~ 548 (597)
+++.||.+ ..+.+||+.+.+-.
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEEEcCcCCCCccceEEEEECCCCeEE
Confidence 77777654 35778998776543
No 395
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.14 E-value=0.21 Score=49.68 Aligned_cols=112 Identities=9% Similarity=0.126 Sum_probs=60.0
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCC-ccCCCCceEecCCCceeEEEEecC---CCCEEEEeeC------
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEP-RDVHYPMVEMPTRSKLSCLSWNKY---TKNLIASSDY------ 399 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~---~~~~l~s~~~------ 399 (597)
...++|+|.|+|+++++-...+.|.+++..++.... ...............+..|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356799999999877766544578888754331110 000100000113467789999994 3444444332
Q ss_pred ------CCcEEEEeCCCC--e-----eee-EEee-ccceeEEEEeCCCCCceEEeecC
Q 042883 400 ------DGIVTIWDVTTS--Q-----SVM-EYEE-HEKRAWSVDFSCTEPSMLVSGSD 442 (597)
Q Consensus 400 ------dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~~~ 442 (597)
...|.-|+...+ . .+. .+.. .......|+|.| ++.++++.++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 234555554321 1 111 1211 122468899999 6777776554
No 396
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.02 E-value=0.25 Score=55.43 Aligned_cols=238 Identities=9% Similarity=0.100 Sum_probs=119.8
Q ss_pred cCCCCEEEEeeCCCcEEEEecccCccCC---ccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCC---
Q 042883 338 DRDDELFASAGVSRRIKIFEFSSVVNEP---RDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTS--- 411 (597)
Q Consensus 338 ~~~~~~l~t~~~d~~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~--- 411 (597)
..++..++.+..+|.+....+....... .........++......++++. ++.+++.|+..|.=.+|.+...
T Consensus 283 ~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l--~~g~lFvgS~~Gds~l~~~~~~~~~ 360 (1158)
T 3ei3_A 283 DPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYL--DNGVVFVGSRLGDSQLVKLNVDSNE 360 (1158)
T ss_dssp STTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEEC--STTEEEEECSSSCEEEEEECSSCCT
T ss_pred ecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEE--CCCEEEEEEecCCcEEEEEecCCCC
Confidence 3456777888889988877664321100 0000111222333445677777 4668999988887777766532
Q ss_pred -----eeeeEEeeccceeEEEEeCCCC----CceEEeecCCCcccCCCCeEE---------------------EEEccCC
Q 042883 412 -----QSVMEYEEHEKRAWSVDFSCTE----PSMLVSGSDDCKVGSADHHIH---------------------YYDLRNI 461 (597)
Q Consensus 412 -----~~~~~~~~~~~~v~~~~~~~~~----~~~l~s~~~d~~~~~~d~~i~---------------------i~d~~~~ 461 (597)
..+..+ ..-++|.+++..... ..+++++|. + .+|.++ +|.++..
T Consensus 361 ~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~-g----~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~ 434 (1158)
T 3ei3_A 361 QGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGA-F----KEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSD 434 (1158)
T ss_dssp TSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECC-G----GGCEEEEEEESBCEEEEEEECCCSCCEEEEECCC
T ss_pred ccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECc-C----CCCeEEEEecCCCEEEEEeecCCCccEEEEEeec
Confidence 223444 345788888775311 344444442 2 234444 4444321
Q ss_pred C------cceeeeccC-------CCceEEEE---ecCC-CeEEEeeCC---------CcEEEEEcCCCcceeeeeCCC-C
Q 042883 462 S------QPLHVFNGH-------KKAVSYVK---FLSN-NELASASTD---------SSLRLWDVKENLPLHTFRGHT-N 514 (597)
Q Consensus 462 ~------~~~~~~~~~-------~~~v~~v~---~~~~-~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~~~-~ 514 (597)
. ..+..+... ...+..+. |..+ ..|+++... ..|++++...+..+..+.... .
T Consensus 435 ~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~ 514 (1158)
T 3ei3_A 435 PNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAK 514 (1158)
T ss_dssp SSCSSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCC
T ss_pred CCCCCCCEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCC
Confidence 0 000001000 00111111 1111 234443321 234555544444444444322 2
Q ss_pred ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccC------CCeEEEecC-c
Q 042883 515 EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSD------SPTMLTANR-K 587 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~------~~~l~s~~~-d 587 (597)
.|...+. ++.+++.++ ++.+.++++..+......... -...|.++++.|. +++++.|.. |
T Consensus 515 ~I~~As~--n~~~vvva~-g~~l~~fel~~~~L~~~~~~~----------l~~evscl~i~~~~~~~~~s~~~aVg~~~d 581 (1158)
T 3ei3_A 515 NISVASC--NSSQVVVAV-GRALYYLQIHPQELRQISHTE----------MEHEVACLDITPLGDSNGLSPLCAIGLWTD 581 (1158)
T ss_dssp CCCEEEE--CSSEEEEEE-TTEEEEEEEETTEEEEEEEEE----------CSSCEEEEECCCCSSSTTCCSEEEEEETTT
T ss_pred EEEEEEe--CCCEEEEEE-CCEEEEEEeeCCceeeecccC----------CCCceEEEEeecCCCCcccccEEEEEECCC
Confidence 4544443 345666664 677888887765322211110 0456999998763 368888986 9
Q ss_pred ccEEEEEec
Q 042883 588 GAIKVLVLA 596 (597)
Q Consensus 588 g~v~iwd~~ 596 (597)
++|+|+++.
T Consensus 582 ~tv~I~sL~ 590 (1158)
T 3ei3_A 582 ISARILKLP 590 (1158)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEECC
Confidence 999999875
No 397
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.00 E-value=0.023 Score=53.52 Aligned_cols=194 Identities=10% Similarity=0.068 Sum_probs=97.2
Q ss_pred CCCEEEEeeCC----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC------CcEEEEeCC
Q 042883 340 DDELFASAGVS----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD------GIVTIWDVT 409 (597)
Q Consensus 340 ~~~~l~t~~~d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d------g~i~iwd~~ 409 (597)
++.+++.|+.+ ..+.+||+.+...... ........-.+++.. ++.+++.|+.+ ..+.+||+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~------~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK------LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEE------ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC------CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 56677777754 5688888776521111 001111111122222 46777777765 458899988
Q ss_pred CCeeeeEEeeccc-eeEEEEeCCCCCceEEeecCCCccc--CCCCeEEEEEccCCCcceeeecc--CCCceEEEEecCCC
Q 042883 410 TSQSVMEYEEHEK-RAWSVDFSCTEPSMLVSGSDDCKVG--SADHHIHYYDLRNISQPLHVFNG--HKKAVSYVKFLSNN 484 (597)
Q Consensus 410 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~~~--~~d~~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~ 484 (597)
++.....-..... .-.+++.. ++.+++.|+.++... ..-..+.+||+.+. . -..+.. ....-.++....+.
T Consensus 127 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~~~~ 202 (306)
T 3ii7_A 127 TESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE-T-WTELCPMIEARKNHGLVFVKDK 202 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEETTE
T ss_pred CCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC-e-EEECCCccchhhcceEEEECCE
Confidence 7754332111111 11122222 567777776543210 01355899998862 2 112211 11111223333445
Q ss_pred eEEEeeCC-----CcEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEEeCC-----CcEEEEEccCCcc
Q 042883 485 ELASASTD-----SSLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACGSET-----NEVFVYHKAISKP 547 (597)
Q Consensus 485 ~l~s~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~~~ 547 (597)
.++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ ..+.+||..+.+-
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 66666653 458899988753221 12111111222222 67788888754 4688999877543
No 398
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.98 E-value=0.029 Score=54.06 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=87.5
Q ss_pred CCeEEEEEccCCCcceeeeccC----CCceEEEEecCCCeEEEeeCCCcEEEEEcCCCc------------ceeeeeC--
Q 042883 450 DHHIHYYDLRNISQPLHVFNGH----KKAVSYVKFLSNNELASASTDSSLRLWDVKENL------------PLHTFRG-- 511 (597)
Q Consensus 450 d~~i~i~d~~~~~~~~~~~~~~----~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~------------~~~~~~~-- 511 (597)
++.|+.-++.. ....+.+... ...|..+..+|+|.+++...+..|.|..+..+. ..+.+.-
T Consensus 40 ~n~iR~~~i~~-~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLT-DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTT-CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCC-CCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 34577777764 2344444432 236788999999666666667789999887321 0112221
Q ss_pred ----CCCceeEEEEeec---CCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE-
Q 042883 512 ----HTNEKNFVGLTVN---NEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT- 583 (597)
Q Consensus 512 ----~~~~v~~v~~s~~---g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s- 583 (597)
...+|..+.|+|- |..|++-..|+.|++||+........ .+...............|.+++|.+++-.|..
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence 2467899999995 56899999999999999986322111 11111111111223467999999998866666
Q ss_pred -ecCcccEE
Q 042883 584 -ANRKGAIK 591 (597)
Q Consensus 584 -~~~dg~v~ 591 (597)
.+.+|.|+
T Consensus 198 ~~t~~GDIY 206 (452)
T 3pbp_A 198 NTTEGGDIF 206 (452)
T ss_dssp ECTTSCEEE
T ss_pred ecCCCCCEE
Confidence 44777764
No 399
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.94 E-value=0.077 Score=51.13 Aligned_cols=140 Identities=14% Similarity=0.222 Sum_probs=92.0
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeeEEeec----cceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-
Q 042883 390 TKNLIASSDYDGIVTIWDVTTSQSVMEYEEH----EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP- 464 (597)
Q Consensus 390 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~- 464 (597)
++..++.+- ++.||.-++..+...+.+... -..|..+..+| +|.+++..+. ..|.|..+..+...
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~--------~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND--------NEIFVMEVPWGYSNV 100 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS--------SEEEEEECCTTCSCC
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC--------CeEEEEEecCccccC
Confidence 455555554 477887787654444444432 22578899999 8888888763 44788777632111
Q ss_pred ----------eeeecc------CCCceEEEEecCC----CeEEEeeCCCcEEEEEcCCC--cceeeee---------CCC
Q 042883 465 ----------LHVFNG------HKKAVSYVKFLSN----NELASASTDSSLRLWDVKEN--LPLHTFR---------GHT 513 (597)
Q Consensus 465 ----------~~~~~~------~~~~v~~v~~~~~----~~l~s~~~d~~v~iwd~~~~--~~~~~~~---------~~~ 513 (597)
...+.- ...+|..+.|+|- ..|++-..|+.|++||+... ++. .+. ...
T Consensus 101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV 179 (452)
T ss_dssp CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence 112211 2567999999997 46999999999999999852 222 221 222
Q ss_pred CceeEEEEeecCCEEEEE--eCCCcEEEE
Q 042883 514 NEKNFVGLTVNNEYIACG--SETNEVFVY 540 (597)
Q Consensus 514 ~~v~~v~~s~~g~~l~~~--~~d~~i~iw 540 (597)
..|.+++|.++|-.|++. +.+|.|+-.
T Consensus 180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 567899999988766664 477888654
No 400
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.87 E-value=0.27 Score=47.13 Aligned_cols=211 Identities=9% Similarity=0.018 Sum_probs=104.0
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCe-eeeEEe---eccceeEEEEeCCC---CCceEEeecC-CCcccCCC
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQ-SVMEYE---EHEKRAWSVDFSCT---EPSMLVSGSD-DCKVGSAD 450 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~-d~~~~~~d 450 (597)
....+++|.| +++ |+++..+|.|++++. ++. .+..+. ........|+++|+ ++.++++.+. +.. +...
T Consensus 29 ~~P~~ia~~p-dG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~-~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLG-GGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG-GHIR 104 (354)
T ss_dssp SCEEEEEEEE-TTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG-GCEE
T ss_pred CCCeEEEEcC-CCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC-CCcc
Confidence 4567899999 566 445556799999974 444 222211 12346889999994 4666665432 000 0001
Q ss_pred CeEEEEEccCCC------cc-eeeec-cCCCceEEEEecCCCeEEEeeCC--------------CcEEEEEcCCC-----
Q 042883 451 HHIHYYDLRNIS------QP-LHVFN-GHKKAVSYVKFLSNNELASASTD--------------SSLRLWDVKEN----- 503 (597)
Q Consensus 451 ~~i~i~d~~~~~------~~-~~~~~-~~~~~v~~v~~~~~~~l~s~~~d--------------~~v~iwd~~~~----- 503 (597)
+.|..|+..... +. +..+. ........++|.|++.|+.+..| |.|.-+|....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 347777765421 11 11122 11123467999999655544322 45555554421
Q ss_pred ---cceeeeeCCCCceeEEEEee-cCCEEEEEeCCC---cEEEEEccCCccccc-cccC------CCCCCCcCcCCCcce
Q 042883 504 ---LPLHTFRGHTNEKNFVGLTV-NNEYIACGSETN---EVFVYHKAISKPAAS-HRFG------SDADHVDDDMGSYFI 569 (597)
Q Consensus 504 ---~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~---~i~iwd~~~~~~~~~-~~~~------~~~~~~~~~~h~~~i 569 (597)
.......++.+ ...++|+| +|.++++-...+ .|.+. ..+..... ...+ .......-......+
T Consensus 185 pf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 185 PFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp SSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 01111123433 46899999 677665543322 23332 22221000 0000 000000000113467
Q ss_pred EEEEEc-------cCCCeEEEecCcccEEEEEec
Q 042883 570 SAVCWK-------SDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 570 ~~v~~~-------~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..++|. .+|.++++.-..+.|...+++
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence 788883 467777776666777766654
No 401
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=96.86 E-value=0.44 Score=47.40 Aligned_cols=250 Identities=10% Similarity=0.052 Sum_probs=119.8
Q ss_pred cEEEEEEcCCCC-EEEEeeCCCcEEEEecccCccC--CccCCCCceE---ecCCCceeEEEEecC---CCCEEEEeeCC-
Q 042883 331 IISSIEFDRDDE-LFASAGVSRRIKIFEFSSVVNE--PRDVHYPMVE---MPTRSKLSCLSWNKY---TKNLIASSDYD- 400 (597)
Q Consensus 331 ~v~~i~~~~~~~-~l~t~~~d~~v~iw~~~~~~~~--~~~~~~~~~~---~~~~~~i~~v~~~~~---~~~~l~s~~~d- 400 (597)
..+.|+|.|+|. .|+++...|.|++++....... .......... ......+..|+|+|+ ++.++++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467999999996 5666677899999975432110 1111111110 012457889999983 23444433221
Q ss_pred -----------CcEEEEeCCCC----------eeeeEEe--eccceeEEEEeCCCCCceEEeecCCCcc----------c
Q 042883 401 -----------GIVTIWDVTTS----------QSVMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKV----------G 447 (597)
Q Consensus 401 -----------g~i~iwd~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~----------~ 447 (597)
..|.-|.+..+ +.+..+. ........|+|.| ++.+.++.++.+.. .
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccccccCcC
Confidence 13444555321 2222322 1122357899999 77777776655431 1
Q ss_pred CCCCeEEEEEccCCC-------------------cceeeeccCCCceEEEEecCC-C------eEEEeeCCC----cEEE
Q 042883 448 SADHHIHYYDLRNIS-------------------QPLHVFNGHKKAVSYVKFLSN-N------ELASASTDS----SLRL 497 (597)
Q Consensus 448 ~~d~~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~v~~~~~-~------~l~s~~~d~----~v~i 497 (597)
..-|.|.-.|..... .+...-.+|.. ...++|+|. + .++.+...| .-.|
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 223555555554310 01111123433 467889987 3 344333212 1234
Q ss_pred EEcCCC------cceeeeeCCC-CceeEEEEeec-------CCEEEEEeCCCcEEEEEccCCccccc-ccc--CCCCCCC
Q 042883 498 WDVKEN------LPLHTFRGHT-NEKNFVGLTVN-------NEYIACGSETNEVFVYHKAISKPAAS-HRF--GSDADHV 560 (597)
Q Consensus 498 wd~~~~------~~~~~~~~~~-~~v~~v~~s~~-------g~~l~~~~~d~~i~iwd~~~~~~~~~-~~~--~~~~~~~ 560 (597)
..+..+ .++..+..+. ..+..+.|-.. |.+|+ +...+.|....+........ ..+ +.....
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~- 330 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC- 330 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSS-
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccc-
Confidence 443322 2455554331 35667766432 34554 44446666555543322111 000 000000
Q ss_pred cCcCCCcceEEEEEccCCCeEEEec
Q 042883 561 DDDMGSYFISAVCWKSDSPTMLTAN 585 (597)
Q Consensus 561 ~~~~h~~~i~~v~~~~~~~~l~s~~ 585 (597)
. ..-...+.+|...|+|.++++..
T Consensus 331 ~-~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 331 R-GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp C-SCCCSEEEEEEECTTCCEEEEEE
T ss_pred c-ccccCcceEEEECCCCCEEEEec
Confidence 0 00145799999999999887764
No 402
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.84 E-value=0.062 Score=51.28 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=87.9
Q ss_pred eeEEEEeCCCCCceEEeecCCC-cc----cCCCCeEEEEEccCCCcceee--ecc-----CCCceEEEEecC--CC--eE
Q 042883 423 RAWSVDFSCTEPSMLVSGSDDC-KV----GSADHHIHYYDLRNISQPLHV--FNG-----HKKAVSYVKFLS--NN--EL 486 (597)
Q Consensus 423 ~v~~~~~~~~~~~~l~s~~~d~-~~----~~~d~~i~i~d~~~~~~~~~~--~~~-----~~~~v~~v~~~~--~~--~l 486 (597)
..-++++.| ++..+++++.-. .+ ...+|.|.+||+.+....... +.+ .......+.+.+ ++ +|
T Consensus 51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345666666 555555542100 00 014677999998742212222 222 123556677654 22 34
Q ss_pred EEe-eC--CCcEEEEEcCCCcc----eeeeeCC-CCceeEEEEeecCCEEEEEeC-----------------CCcEEEEE
Q 042883 487 ASA-ST--DSSLRLWDVKENLP----LHTFRGH-TNEKNFVGLTVNNEYIACGSE-----------------TNEVFVYH 541 (597)
Q Consensus 487 ~s~-~~--d~~v~iwd~~~~~~----~~~~~~~-~~~v~~v~~s~~g~~l~~~~~-----------------d~~i~iwd 541 (597)
+++ .. +.+|.+|++..... +..+.+. -...+.+.+.++|.++++... .|.|+-||
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 46788888765322 2233322 235689999999998777541 24455555
Q ss_pred ccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE-ecCcccEEEEEec
Q 042883 542 KAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT-ANRKGAIKVLVLA 596 (597)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s-~~~dg~v~iwd~~ 596 (597)
. ++.. .... .-...+.++|+||+++|+. -+..+.|..|+++
T Consensus 210 ~--~~~~-~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 210 P--NDVR-VVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp T--TCCE-EEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred C--CeEE-Eeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 4 3221 1111 1345799999999987655 4567889999885
No 403
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.68 E-value=0.053 Score=60.37 Aligned_cols=222 Identities=11% Similarity=0.131 Sum_probs=128.1
Q ss_pred CCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeeccceeEEEEe
Q 042883 350 SRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHEKRAWSVDF 429 (597)
Q Consensus 350 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 429 (597)
...|.|.|+..+....+ . +-..-+.-.+| ..+.++.-. ...+.|||+.+...+..+.- ..+|.--.|
T Consensus 47 ~~~vvIidl~~~~~~~r------r----pi~AdsAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkW 113 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR------R----PISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKW 113 (1630)
T ss_pred CceEEEEECCCCCCccc------c----cccchhhccCC-CcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEe
Confidence 34788888877521110 0 11111233567 566776665 67899999998887777643 456777777
Q ss_pred CCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccC----CCceEEEEecCC-CeEEEee-------CCCcEEE
Q 042883 430 SCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGH----KKAVSYVKFLSN-NELASAS-------TDSSLRL 497 (597)
Q Consensus 430 ~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~v~~v~~~~~-~~l~s~~-------~d~~v~i 497 (597)
-. .+.++-.+ +..|+-|++.....|++.|..| ...|..-..+++ .+++..| ..|.+.+
T Consensus 114 is--~~~l~lVT--------~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL 183 (1630)
T 1xi4_A 114 IS--LNTVALVT--------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (1630)
T ss_pred cC--CCeeEEEc--------CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence 64 33333332 2349999997656777777655 345666666777 5544322 4578999
Q ss_pred EEcCCCcceeeeeCCCCceeEEEEee--c-CCEEEEEe---CCCcEEEEEccCC---ccccccccCCCCCCCcCcCCCcc
Q 042883 498 WDVKENLPLHTFRGHTNEKNFVGLTV--N-NEYIACGS---ETNEVFVYHKAIS---KPAASHRFGSDADHVDDDMGSYF 568 (597)
Q Consensus 498 wd~~~~~~~~~~~~~~~~v~~v~~s~--~-g~~l~~~~---~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~h~~~ 568 (597)
|....+ .-+.+.||...-..+.+.. . ..+++.+. ..+.++|-++... .+....... ... .....-...
T Consensus 184 yS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~-~~~-~~~~~~~Df 260 (1630)
T 1xi4_A 184 YSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV-DVF-FPPEAQNDF 260 (1630)
T ss_pred eecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccc-ccc-CCcccccCc
Confidence 987643 3445556654332222211 1 12222221 2378999988543 111110000 000 000112455
Q ss_pred eEEEEEccCCCeEEEecCcccEEEEEecC
Q 042883 569 ISAVCWKSDSPTMLTANRKGAIKVLVLAA 597 (597)
Q Consensus 569 i~~v~~~~~~~~l~s~~~dg~v~iwd~~~ 597 (597)
..++..++.-..+...+.-|.|++||+.|
T Consensus 261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred ceEEEeccccCEEEEEecCceEEEEeccc
Confidence 67888888888888889999999999865
No 404
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.66 E-value=0.082 Score=49.95 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=75.7
Q ss_pred CCCEEEEeeCC-------CcEEEEeCCCCeeeeEEeeccce-eEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC
Q 042883 390 TKNLIASSDYD-------GIVTIWDVTTSQSVMEYEEHEKR-AWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI 461 (597)
Q Consensus 390 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~ 461 (597)
++.+++.|+.+ ..+.+||+.+.+....-...... -.+++.. ++.+++.|+.+.. ...-..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~-~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDD-KKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE--TTEEEEECCEESS-SCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE--CCEEEEEcCCCCC-CCccceEEEEcCCCC
Confidence 46777777754 24888998876544321111111 1122222 6677777764221 112345899998862
Q ss_pred Ccc-eeeeccCCCceEEEEecCCCeEEEeeCC-----CcEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEEeC
Q 042883 462 SQP-LHVFNGHKKAVSYVKFLSNNELASASTD-----SSLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 462 ~~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~~ 533 (597)
... +..+...... .+++...+..++.|+.+ ..+.+||+.+.+-.. .+....... ++ ...++.+++.||.
T Consensus 186 ~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~ 262 (318)
T 2woz_A 186 DWKDLAPMKTPRSM-FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SL-VSLAGSLYAIGGF 262 (318)
T ss_dssp EEEEECCCSSCCBS-CEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EE-EEETTEEEEECCB
T ss_pred EEEECCCCCCCccc-ceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EE-EEECCEEEEECCe
Confidence 211 1111111111 22333344566667643 347789987754222 111111111 12 2336777777775
Q ss_pred C--------------CcEEEEEccCCccc
Q 042883 534 T--------------NEVFVYHKAISKPA 548 (597)
Q Consensus 534 d--------------~~i~iwd~~~~~~~ 548 (597)
+ ..+.+||+.+.+-.
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 263 AMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp CCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred eccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 4 35778887765443
No 405
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.65 E-value=0.05 Score=51.19 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=95.6
Q ss_pred CCCEEEEeeC----C-----CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCC-----CcEEE
Q 042883 340 DDELFASAGV----S-----RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYD-----GIVTI 405 (597)
Q Consensus 340 ~~~~l~t~~~----d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~d-----g~i~i 405 (597)
++.+++.|+. + ..+.+||+.+....... ..+. ..... +++.. ++.+++.|+.+ ..+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~ 141 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-PMSV----PRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVER 141 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-CCSS----CCBTC-EEEEE--TTEEEEECCEETTEECCCEEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-CCCc----Ccccc-EEEEE--CCEEEEEcCCCCCcccccEEE
Confidence 5667777765 2 45788887765211110 0010 11111 22222 46677777643 36888
Q ss_pred EeCCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc-eeeeccCCCceEEEEecC
Q 042883 406 WDVTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP-LHVFNGHKKAVSYVKFLS 482 (597)
Q Consensus 406 wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~ 482 (597)
||+.++..... +.........+.+ ++.+++.|+.++.- ....+.+||+.+.... +..+....... +++...
T Consensus 142 yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~ 215 (308)
T 1zgk_A 142 YEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTN--RLNSAECYYPERNEWRMITAMNTIRSGA-GVCVLH 215 (308)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSC--BCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEET
T ss_pred ECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCC--cCceEEEEeCCCCeEeeCCCCCCccccc-eEEEEC
Confidence 99887654322 1111111122222 56777777765431 1356899998762111 11111111112 223334
Q ss_pred CCeEEEeeCC-----CcEEEEEcCCCccee--eeeCCCCceeEEEEeecCCEEEEEeCC-----CcEEEEEccCCcc
Q 042883 483 NNELASASTD-----SSLRLWDVKENLPLH--TFRGHTNEKNFVGLTVNNEYIACGSET-----NEVFVYHKAISKP 547 (597)
Q Consensus 483 ~~~l~s~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~~~ 547 (597)
+..++.|+.+ ..+.+||+.+.+-.. .+...... .+++ .-++.+++.|+.+ ..+.+||+.+.+-
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEE-EECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 4566777664 468999988754222 11111111 1222 2367777888754 3578888776543
No 406
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.62 E-value=0.073 Score=51.25 Aligned_cols=201 Identities=10% Similarity=-0.029 Sum_probs=92.8
Q ss_pred CCCEEEEeeCC-CcEEEEecccCccCCccCCCCceEec-CCCceeEEEEecCCCCEEEEeeC-C---------CcEEEEe
Q 042883 340 DDELFASAGVS-RRIKIFEFSSVVNEPRDVHYPMVEMP-TRSKLSCLSWNKYTKNLIASSDY-D---------GIVTIWD 407 (597)
Q Consensus 340 ~~~~l~t~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~~l~s~~~-d---------g~i~iwd 407 (597)
++.+++.|+.+ ..+.+||+............ .. ....-.+++.. ++.+++.|+. + ..+.+||
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~----~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd 92 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAA----FPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYN 92 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCC----CTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCC----CCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEe
Confidence 56666766643 46888887642111111111 11 01111122222 4677777765 2 4688999
Q ss_pred CCCCeeeeEEeec-ccee-EEEEeCCCCCceEEeecCCCcc--------------------------------cCCCCeE
Q 042883 408 VTTSQSVMEYEEH-EKRA-WSVDFSCTEPSMLVSGSDDCKV--------------------------------GSADHHI 453 (597)
Q Consensus 408 ~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~~l~s~~~d~~~--------------------------------~~~d~~i 453 (597)
+.+......-... .... .+++. . ++.+++.|+.++.. ......+
T Consensus 93 ~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 93 PKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 9876543221111 1111 11222 2 67888888765421 0123569
Q ss_pred EEEEccCCCcc-eeeeccCCCceEEEEecCCCeEEEeeC------CCcEEEEEc--CCCc--ceeeeeCCCCceeEEEEe
Q 042883 454 HYYDLRNISQP-LHVFNGHKKAVSYVKFLSNNELASAST------DSSLRLWDV--KENL--PLHTFRGHTNEKNFVGLT 522 (597)
Q Consensus 454 ~i~d~~~~~~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~------d~~v~iwd~--~~~~--~~~~~~~~~~~v~~v~~s 522 (597)
.+||+.+.... +..+......-.+++...+..++.|+. ...+.+||+ .+.+ .+..+..........+..
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 99998862211 111111111112333344455666653 345777876 3322 121221111111222333
Q ss_pred ecCCEEEEEeCC----------------------CcEEEEEccCCccc
Q 042883 523 VNNEYIACGSET----------------------NEVFVYHKAISKPA 548 (597)
Q Consensus 523 ~~g~~l~~~~~d----------------------~~i~iwd~~~~~~~ 548 (597)
.++.+++.||.+ ..+.+||+.+.+-.
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~ 298 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence 467777777742 25788998876543
No 407
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.56 E-value=0.061 Score=50.78 Aligned_cols=188 Identities=11% Similarity=0.036 Sum_probs=89.4
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeeE-EeeccceeEEEEeCCCCCceEEeecC----CCcccCCCCeEEEEEccCCCcceee
Q 042883 393 LIASSDYDGIVTIWDVTTSQSVME-YEEHEKRAWSVDFSCTEPSMLVSGSD----DCKVGSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 393 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~----d~~~~~~d~~i~i~d~~~~~~~~~~ 467 (597)
+++.|+ ..+.+||..+++.... +.............. ++.+++.|+. ++........+..||+.+ .. -..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~-~~-W~~ 81 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD-SE-WLG 81 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTT-TE-EEE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCC-Ce-EEE
Confidence 445555 5799999988875431 111111222222222 6777777773 111011123478888875 22 111
Q ss_pred eccC--CCceEEEEecCCCeEEEeeCC--------CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeC-C--
Q 042883 468 FNGH--KKAVSYVKFLSNNELASASTD--------SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSE-T-- 534 (597)
Q Consensus 468 ~~~~--~~~v~~v~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d-- 534 (597)
+..- ...-.+++...+..++.|+.+ ..+.+||..+.+-...-..........+...++.+++.||. +
T Consensus 82 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 82 MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred CCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 1110 000112222333556666632 45889998875422111111111111222346777777776 2
Q ss_pred ---CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcc-----cEEEEEec
Q 042883 535 ---NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKG-----AIKVLVLA 596 (597)
Q Consensus 535 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg-----~v~iwd~~ 596 (597)
..+.+||..+.+-...-..+. . ...-..+.+ ++.+++.|+.++ .+.+||+.
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~----~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQT----A-----RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSS----C-----CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred cccceEEEEeCCCCeEEECCCCCC----c-----hhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 468999988764332221111 0 111122223 566777776544 46677764
No 408
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.45 E-value=0.096 Score=45.48 Aligned_cols=142 Identities=8% Similarity=0.000 Sum_probs=79.4
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCee------eeEEe--eccceeEEEEeCCCCCceEEeecCCCcccCCC
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQS------VMEYE--EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSAD 450 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d 450 (597)
..+..++|+| ++.+.++ .+|.++-.+..+... -..+- +-.. -..+.|.| ++.+.++ + |
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav-~--------d 106 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV-S--------K 106 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE-E--------T
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe-C--------C
Confidence 4788999999 7776666 678877777644211 11110 1111 46788998 7777666 3 3
Q ss_pred CeEEEEEccCCCcc--e---eee-ccCCCceEEEEecCCCeEEEeeCCCcEEEEEcCCCc------ceeeee-CCCCcee
Q 042883 451 HHIHYYDLRNISQP--L---HVF-NGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL------PLHTFR-GHTNEKN 517 (597)
Q Consensus 451 ~~i~i~d~~~~~~~--~---~~~-~~~~~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~-~~~~~v~ 517 (597)
|.|+-++..+.+.. + ..+ ..-=..+..|.+.|++.|.... |+.++-+....+. ....+. .......
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 44777765332211 0 111 1111467899999998888777 8885433322111 011111 2222334
Q ss_pred EEEEeecCCEEEEEeCCCcE
Q 042883 518 FVGLTVNNEYIACGSETNEV 537 (597)
Q Consensus 518 ~v~~s~~g~~l~~~~~d~~i 537 (597)
.+.|.++|.+.++. +|.+
T Consensus 186 ~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECTTSCEEEEE--TTEE
T ss_pred EEEECCCCcEEEEe--CCeE
Confidence 56788888877666 6644
No 409
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.21 E-value=0.27 Score=52.13 Aligned_cols=202 Identities=10% Similarity=0.088 Sum_probs=100.9
Q ss_pred CCCCEEEEeeCC----CcEEEEecccCccCCccCCCCceEec-CCCceeEEEEecCCCCEEEEeeCC------CcEEEEe
Q 042883 339 RDDELFASAGVS----RRIKIFEFSSVVNEPRDVHYPMVEMP-TRSKLSCLSWNKYTKNLIASSDYD------GIVTIWD 407 (597)
Q Consensus 339 ~~~~~l~t~~~d----~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~~l~s~~~d------g~i~iwd 407 (597)
.++.+++.|+.+ ..+.+||..+..........+..... .......+.+.. ++.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 456777777753 45788887765211111000000001 111222333321 46677777654 3578899
Q ss_pred CCCCeeeeE--EeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceee----eccCCCceEEEEec
Q 042883 408 VTTSQSVME--YEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV----FNGHKKAVSYVKFL 481 (597)
Q Consensus 408 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~v~~v~~~ 481 (597)
..++..... +......- +++... ++.+++.||.++. +.+.+||+.+....... .........++.+.
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~-~~~iyv~GG~~~~-----~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLP-DGNVLILGGVTEG-----PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECT-TSCEEEECCBCSS-----CSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEc-CCEEEEECCCCCC-----CCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 887654322 21111112 223322 6778888876543 16999998863211111 11122222345555
Q ss_pred CC-C-eEEEeeC--C-----CcEEEEEcCCCcc-----eeeeeC---CCCceeEEEEeecCCEEEEEeCC--------Cc
Q 042883 482 SN-N-ELASAST--D-----SSLRLWDVKENLP-----LHTFRG---HTNEKNFVGLTVNNEYIACGSET--------NE 536 (597)
Q Consensus 482 ~~-~-~l~s~~~--d-----~~v~iwd~~~~~~-----~~~~~~---~~~~v~~v~~s~~g~~l~~~~~d--------~~ 536 (597)
.+ + .++.||. + +.+.+||+.+... -..+.. ....-.+++...++.+++.||.+ ..
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence 44 3 4566665 2 3588999987661 111111 11111133333337788888743 46
Q ss_pred EEEEEccCCccc
Q 042883 537 VFVYHKAISKPA 548 (597)
Q Consensus 537 i~iwd~~~~~~~ 548 (597)
|.+||+.+.+-.
T Consensus 628 v~~yd~~t~~W~ 639 (695)
T 2zwa_A 628 IISLDPLSETLT 639 (695)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 999998876543
No 410
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.86 E-value=1.3 Score=42.26 Aligned_cols=149 Identities=11% Similarity=0.041 Sum_probs=78.0
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe-------eccceeEEEEeCCC---CCceEEeecCCCcccC
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE-------EHEKRAWSVDFSCT---EPSMLVSGSDDCKVGS 448 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~~l~s~~~d~~~~~ 448 (597)
...+.|+|.| +++.|+++...|.|++++.. +.....+. ........|+++|+ ++.+.++......-+.
T Consensus 18 ~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLP-DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECS-TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcC-CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3567899999 67724455567999999853 33221111 12345689999994 4555555432110000
Q ss_pred CCCeEEEEEccCCCcc---e----eeec---cCCCceEEEEecCCCeEEEeeCC--------------CcEEEEEcCCCc
Q 042883 449 ADHHIHYYDLRNISQP---L----HVFN---GHKKAVSYVKFLSNNELASASTD--------------SSLRLWDVKENL 504 (597)
Q Consensus 449 ~d~~i~i~d~~~~~~~---~----~~~~---~~~~~v~~v~~~~~~~l~s~~~d--------------~~v~iwd~~~~~ 504 (597)
....|..|+....... . ..+. ........++|.|++.|+.+..| |.|.-+|....-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 0224666666432111 1 1111 11122467999999776655433 456666654320
Q ss_pred ------------ceeee-eCCCCceeEEEEee-cCCEEEE
Q 042883 505 ------------PLHTF-RGHTNEKNFVGLTV-NNEYIAC 530 (597)
Q Consensus 505 ------------~~~~~-~~~~~~v~~v~~s~-~g~~l~~ 530 (597)
....+ .++. ....++|+| +|.++++
T Consensus 176 p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 11112 2333 357899999 5655544
No 411
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.85 E-value=0.22 Score=47.81 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCeeeeEEeecc-cee-EEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeec---cCCCc-
Q 042883 401 GIVTIWDVTTSQSVMEYEEHE-KRA-WSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN---GHKKA- 474 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~- 474 (597)
..+.+||+.+......-.... ... .+++.. ++.+++.|+.++. +.....+.+||+......-..+. .....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~-~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKP-GLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEET-TEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCC-CcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 478899998775443321111 111 233333 5677777764321 11234577787621111111111 11111
Q ss_pred eEEEEecCCCeEEEeeCC----------------------CcEEEEEcCCCcc--eeeeeCCCCceeEEEEeecCCEEEE
Q 042883 475 VSYVKFLSNNELASASTD----------------------SSLRLWDVKENLP--LHTFRGHTNEKNFVGLTVNNEYIAC 530 (597)
Q Consensus 475 v~~v~~~~~~~l~s~~~d----------------------~~v~iwd~~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~ 530 (597)
-.++....+..++.|+.+ ..+.+||+.+.+- +..+...... ..+...++++++.
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~ 322 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLII 322 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEE
Confidence 112333344556666632 2578899886443 3222221111 2233457888888
Q ss_pred EeCCC------cEEEEEccCCcccccccc
Q 042883 531 GSETN------EVFVYHKAISKPAASHRF 553 (597)
Q Consensus 531 ~~~d~------~i~iwd~~~~~~~~~~~~ 553 (597)
||.++ .|.++++++++.+....+
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 88653 466678888877766554
No 412
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.028 Score=53.13 Aligned_cols=147 Identities=9% Similarity=0.079 Sum_probs=83.6
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeeEEeec-cceeEEEEeC--CCCCceEEee-cCCCcccCCCCeEEEEEccCCCccee
Q 042883 391 KNLIASSDYDGIVTIWDVTTSQSVMEYEEH-EKRAWSVDFS--CTEPSMLVSG-SDDCKVGSADHHIHYYDLRNISQPLH 466 (597)
Q Consensus 391 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~s~-~~d~~~~~~d~~i~i~d~~~~~~~~~ 466 (597)
+.+++.++.||.|.-+|..+|+....+... ..++....-. +.++..++.. + .||.|+.+|..+ +....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~-------~dG~l~a~~~~~-G~~~~ 81 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPF-------GDGNIYYFNAHQ-GLQKL 81 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCS-------TTTEEEEEETTT-EEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEEC-------CCCEEEEEECCC-CcEEe
Confidence 457899999999999999999999888654 1222221111 1122333332 3 356688888775 32221
Q ss_pred eecc----CCCceEE---EEe------cCCCeEEEeeCCCcEEEEEcCCCcceeeeeCCC--Cc-----eeEEEEe----
Q 042883 467 VFNG----HKKAVSY---VKF------LSNNELASASTDSSLRLWDVKENLPLHTFRGHT--NE-----KNFVGLT---- 522 (597)
Q Consensus 467 ~~~~----~~~~v~~---v~~------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~-----v~~v~~s---- 522 (597)
.+.. ...++.. ..+ +.++.+++|+.+|.+...|+++|+.+..+.... +. ..+....
T Consensus 82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 1110 1122221 001 145789999999999999999999998886321 10 0011110
Q ss_pred -ecCCEEEEEeCCCcEEEEEccCCc
Q 042883 523 -VNNEYIACGSETNEVFVYHKAISK 546 (597)
Q Consensus 523 -~~g~~l~~~~~d~~i~iwd~~~~~ 546 (597)
..+..|+.|..+..+.+.+ ++|+
T Consensus 162 d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 162 QECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp ---CCEEEEEEEEEECEECC-TTSC
T ss_pred ccCCCeEEEecceEEEEEEC-CCCC
Confidence 1245677777777777766 3443
No 413
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.73 E-value=0.0061 Score=54.22 Aligned_cols=46 Identities=22% Similarity=0.624 Sum_probs=38.3
Q ss_pred Cccccccccccccccccc-ccccccHHHHHHhhcCCC--CCCCCCCCCc
Q 042883 38 DTLCPICKQLMTDAFMTA-CGHSFCYTCIFTHLRNKS--DCPCCGCHLT 83 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~-CgH~FC~~Cl~~~~~~~~--~CP~Cr~~~~ 83 (597)
-..|.||.++...-+.-+ |+|.|-..|+.+|+.... .||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 467999999999655444 999999999999998664 6999998754
No 414
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.57 E-value=0.032 Score=48.46 Aligned_cols=109 Identities=8% Similarity=0.007 Sum_probs=64.9
Q ss_pred CceEEEEecCCCeEEEeeCCCcEEEEEcCCCcce-----eeeeCCC--CceeEEEEeecCCEEEEEeCCCcEEEEEccCC
Q 042883 473 KAVSYVKFLSNNELASASTDSSLRLWDVKENLPL-----HTFRGHT--NEKNFVGLTVNNEYIACGSETNEVFVYHKAIS 545 (597)
Q Consensus 473 ~~v~~v~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~~~~--~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 545 (597)
..+..++|+|++.|.+. .+|.++-.+..+.... .+..+.. ..-..+.|+|+|.+.++ .||.|+-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 36779999999777766 7777776665442211 1111110 11367899999998877 5699988875443
Q ss_pred ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccE
Q 042883 546 KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAI 590 (597)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v 590 (597)
..-..+..+.... ...=..+..|.|.|+|.+.++. |+.+
T Consensus 118 ~~~~Wl~~a~~vg----~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 118 DTDNWIARATEVG----SGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp TTCCHHHHSEEEE----CSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCceeccccEec----cCCCCceEEEEECCCceEEEEe--CCcE
Confidence 2222211110000 0002467899999999877766 6664
No 415
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.39 E-value=0.52 Score=49.88 Aligned_cols=155 Identities=10% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCCEEEEeeCC----CcEEEEeCCCCeeeeEE-e-------eccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 390 TKNLIASSDYD----GIVTIWDVTTSQSVMEY-E-------EHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 390 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
++.+++.|+.+ ..+.+||..++.....- . .....-..+.+.. ++.+++.||.++.- ..-+.+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~-~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPH-QGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTT-CBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCC-CccccEEEEe
Confidence 56777777753 46888998876544322 1 1111222333322 56777777765431 1124589999
Q ss_pred ccCCCcc-eeeeccCCCceEEEEecCCCeEEEeeCCC--cEEEEEcCCCcceee-----eeCCCCceeEEEEeec-CCEE
Q 042883 458 LRNISQP-LHVFNGHKKAVSYVKFLSNNELASASTDS--SLRLWDVKENLPLHT-----FRGHTNEKNFVGLTVN-NEYI 528 (597)
Q Consensus 458 ~~~~~~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~-----~~~~~~~v~~v~~s~~-g~~l 528 (597)
+.+.... +..+......-..+.+..+..++.||.++ .+.+||..+..-... ..........+.+..+ +.++
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8862111 11111111122233333446777777655 689999887542221 1111222233555555 6677
Q ss_pred EEEeC--C-----CcEEEEEccCCc
Q 042883 529 ACGSE--T-----NEVFVYHKAISK 546 (597)
Q Consensus 529 ~~~~~--d-----~~i~iwd~~~~~ 546 (597)
+.||. + +.+.+||+.+..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EECCcCCCCCeeeCcEEEEEccCCc
Confidence 77776 2 458999988876
No 416
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.36 E-value=3.7 Score=43.97 Aligned_cols=237 Identities=13% Similarity=0.115 Sum_probs=126.0
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC
Q 042883 330 NIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT 409 (597)
Q Consensus 330 ~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 409 (597)
..|.++..+.+|.+.+ |+.+| |..|+..+..... ...+.........|.++...+ ++..|..|.. +.+..||..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~ 219 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPS 219 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE--ecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCC
Confidence 4688888888777554 55444 6677765431100 000000000123477887775 4555566664 468889987
Q ss_pred CCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--------CCCceEEEEec
Q 042883 410 TSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG--------HKKAVSYVKFL 481 (597)
Q Consensus 410 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~v~~v~~~ 481 (597)
++............|.++.... ++.+.+.. .+| +.++|..+ . ....+.. ....|.++...
T Consensus 220 ~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT-~~G--------l~~~~~~~-~-~~~~~~~~~~~~~~l~~~~i~~i~~D 287 (758)
T 3ott_A 220 TGQIKQTEAFHNNSIKSLALDG-NGDLLAGT-DNG--------LYVYHNDT-T-PLQHIIHDSRNIQSLTNNIIWNIFAD 287 (758)
T ss_dssp TTEEEEEEEEEEEEEEEEEECT-TCCEEEEE-TTE--------EEEECCTT-S-CCEEECCCTTCTTSCSCSCEEEEEEC
T ss_pred CCeEEeccCCCCCeEEEEEEcC-CCCEEEEe-CCc--------eeEEecCC-C-cEEEEEcCCCCcCcCCcCeEEEEEEc
Confidence 7654322112234688888876 55555543 223 78888764 2 2222211 22458888877
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCcceeeee-------CCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccc--cccc
Q 042883 482 SNNELASASTDSSLRLWDVKENLPLHTFR-------GHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPA--ASHR 552 (597)
Q Consensus 482 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~--~~~~ 552 (597)
.++.|..|+..| +.++... . ....+. .....|.++.-+.+|.+.+ |+.+| +..++..++... ..+.
T Consensus 288 ~~g~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~ 362 (758)
T 3ott_A 288 QEHNIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYR 362 (758)
T ss_dssp TTCCEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEEC
T ss_pred CCCCEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEec
Confidence 777788888777 5554332 2 111111 1134577777777777554 44554 666765543221 1111
Q ss_pred cCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEe
Q 042883 553 FGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVL 595 (597)
Q Consensus 553 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~ 595 (597)
..... ..-....|.++.-+.+|.+.+.. . +-|..||.
T Consensus 363 ~~~~~----~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~ 399 (758)
T 3ott_A 363 MGDKT----YPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDY 399 (758)
T ss_dssp TTCSS----SCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEET
T ss_pred cCCcC----CCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCc
Confidence 11000 00013468888888888765543 3 34666664
No 417
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.3 Score=46.13 Aligned_cols=189 Identities=9% Similarity=0.011 Sum_probs=92.8
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCC---CCceEecCCCceeEEEEecCCCCEEEEe-eCCCcEEEEeCCCCeeeeEE
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVH---YPMVEMPTRSKLSCLSWNKYTKNLIASS-DYDGIVTIWDVTTSQSVMEY 417 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~i~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 417 (597)
..+++++.||.|.-+|..++........ .+........ .+.++..++.. +.||.|..++..+|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~-------~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPS-------RLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSC-------TTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCc-------cccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 3677788888888888777622221110 1111110000 01123344443 57999999999888655444
Q ss_pred eec----cceeEEEEeCC--------CCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCC--Cc-----eEEE
Q 042883 418 EEH----EKRAWSVDFSC--------TEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHK--KA-----VSYV 478 (597)
Q Consensus 418 ~~~----~~~v~~~~~~~--------~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~-----v~~v 478 (597)
... .+++.. .-.| ..+..+++|+ .+|.+.-.|+++ ++.+-.+.... +. ..+.
T Consensus 84 ~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs-------~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~e~~~ 154 (339)
T 2be1_A 84 SIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGS-------MRTIMYTINMLN-GEIISAFGPGSKNGYFGSQSVDCS 154 (339)
T ss_dssp EHHHHHTTCSEEE-ECC----------CCEEEEECE-------EEEEEEEEETTT-CCEEEEESTTCBCC----------
T ss_pred ccccceecccccc-CCCceeecccccccCCEEEEEe-------cCCEEEEEECCC-CcEEEEEecCCCcccccccccccc
Confidence 321 111211 1000 0234555655 455589999988 66666664221 10 0011
Q ss_pred E---e---cCCCeEEEeeCCCcEEEEEcCCCcceeeee-----CCCCc--e-eEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 479 K---F---LSNNELASASTDSSLRLWDVKENLPLHTFR-----GHTNE--K-NFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 479 ~---~---~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~--v-~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
. + ..++.++.+..+..+.+.+ ++|+ +-.+. ..... + ..-..+.|+.+ ++++.||.|.-+|..+
T Consensus 155 ~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~ 231 (339)
T 2be1_A 155 PEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDF 231 (339)
T ss_dssp ----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTT
T ss_pred cccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCC
Confidence 1 1 1125677777777777766 4443 21111 10000 0 00001224555 4467888888888888
Q ss_pred Ccccc
Q 042883 545 SKPAA 549 (597)
Q Consensus 545 ~~~~~ 549 (597)
|..+.
T Consensus 232 G~~~W 236 (339)
T 2be1_A 232 RIARW 236 (339)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77665
No 418
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.27 E-value=2.1 Score=42.43 Aligned_cols=103 Identities=6% Similarity=0.086 Sum_probs=58.6
Q ss_pred ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcc--eeeecc------CCCceEEEEecC----CCeEEEe
Q 042883 422 KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQP--LHVFNG------HKKAVSYVKFLS----NNELASA 489 (597)
Q Consensus 422 ~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~--~~~~~~------~~~~v~~v~~~~----~~~l~s~ 489 (597)
...++|+|.| ++.++++-... +.|++++... +.. +..+.. ....+..|+|+| ++.|++.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~g-------g~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERAT-------GKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTT-------CEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcC-CCcEEEEEcCC-------CEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 4578999999 77887775422 2477776543 222 222211 245678999999 4555544
Q ss_pred eC-------------CCcEEEEEcCCC-------cceee-eeC-CCCceeEEEEeecCCEEEEEeC
Q 042883 490 ST-------------DSSLRLWDVKEN-------LPLHT-FRG-HTNEKNFVGLTVNNEYIACGSE 533 (597)
Q Consensus 490 ~~-------------d~~v~iwd~~~~-------~~~~~-~~~-~~~~v~~v~~s~~g~~l~~~~~ 533 (597)
.. ...|.-|+...+ +.+.. +.. .......|+|.|||.++++.+.
T Consensus 98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 32 234555655322 11221 221 1234678999999987776543
No 419
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.03 E-value=0.036 Score=39.51 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=41.3
Q ss_pred ccCcCCCCCccccccccccccccccccc-ccccHHHHHHhhcCCCCCCCCCCCCcc
Q 042883 30 DRDTEVDRDTLCPICKQLMTDAFMTACG-HSFCYTCIFTHLRNKSDCPCCGCHLTC 84 (597)
Q Consensus 30 ~~~~~~~~~l~C~IC~~~f~~P~~l~Cg-H~FC~~Cl~~~~~~~~~CP~Cr~~~~~ 84 (597)
.+...+---+.|-.|.-.++ -.+.|. |-+|++||...+.....||+|...+..
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCCccccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 44556666788999986666 445666 999999999988888889999988753
No 420
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.90 E-value=0.037 Score=38.95 Aligned_cols=45 Identities=27% Similarity=0.746 Sum_probs=34.6
Q ss_pred ccccccccccc-----ccccc--cccccccHHHHHH-hhcCCCCCCCCCCCCc
Q 042883 39 TLCPICKQLMT-----DAFMT--ACGHSFCYTCIFT-HLRNKSDCPCCGCHLT 83 (597)
Q Consensus 39 l~C~IC~~~f~-----~P~~l--~CgH~FC~~Cl~~-~~~~~~~CP~Cr~~~~ 83 (597)
-.|.||.|..- +|.+. -|+-..|+.|++- .-++...||.|+..+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 57999999854 35433 4999999999983 3345667999999996
No 421
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.75 E-value=3.8 Score=41.00 Aligned_cols=74 Identities=4% Similarity=-0.118 Sum_probs=50.5
Q ss_pred ceeEEEEeecCCEEEEEe-CCCcEEEEEccCC------cc---ccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe
Q 042883 515 EKNFVGLTVNNEYIACGS-ETNEVFVYHKAIS------KP---AASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~------~~---~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
..-.+.++|||+++++++ .+.++.++|+..- +. ........ . -.......+|+++|.-..|-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-------e-~GlGPlHt~Fd~~G~aYTtl 395 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-------E-LGLGPLHTTFDGRGNAYTTL 395 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-------B-CCSCEEEEEECSSSEEEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-------c-CCCcccEEEECCCCceEeee
Confidence 345688999999987765 5789999998742 11 11110000 0 14457889999999555666
Q ss_pred cCcccEEEEEec
Q 042883 585 NRKGAIKVLVLA 596 (597)
Q Consensus 585 ~~dg~v~iwd~~ 596 (597)
--|..|.-|+++
T Consensus 396 fidSqvvkWni~ 407 (638)
T 3sbq_A 396 FIDSQVVKWNME 407 (638)
T ss_dssp TTTTEEEEEEHH
T ss_pred eecceEEEEecc
Confidence 789999999975
No 422
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.66 E-value=0.015 Score=39.76 Aligned_cols=33 Identities=27% Similarity=0.872 Sum_probs=28.2
Q ss_pred Ccccccccccccccccccc----cccccHHHHHHhhc
Q 042883 38 DTLCPICKQLMTDAFMTAC----GHSFCYTCIFTHLR 70 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~C----gH~FC~~Cl~~~~~ 70 (597)
.|.|.+|.+.+.|.....| +|-||..|-..+++
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 6899999999999854444 79999999998886
No 423
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.35 E-value=3.2 Score=38.44 Aligned_cols=126 Identities=5% Similarity=0.007 Sum_probs=62.9
Q ss_pred CcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEee-cCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEE
Q 042883 401 GIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSG-SDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVK 479 (597)
Q Consensus 401 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 479 (597)
..|+..++..+.... +... .. ..|++.+..+..+. +.++ +..|+..++. +.....+..+.. ..
T Consensus 88 ~~Iy~i~~dg~~~~~-l~~~--~~--~~~s~~g~~Iy~~~~~~~~-----~~~Iy~~~~d--Gs~~~~lt~~~~----~~ 151 (302)
T 3s25_A 88 NSLCRIKRNGHGSTV-LDPD--PC--IYASLIGNYIYYLHYDTQT-----ATSLYRIRID--GEEKKKIKNHYL----FT 151 (302)
T ss_dssp EEEEEEETTSCCCEE-EECS--CE--EEEEEETTEEEEEEESSSS-----CEEEEEEETT--SCCCEEEESSCC----CC
T ss_pred CeEEEEeCCCCcceE-eecC--Cc--cEEEEeCCEEEEEeecCCC-----CceEEEEECC--CCCeEEEeCCCc----eE
Confidence 367777776654332 3221 12 24555344444433 1121 2346666665 333444443332 33
Q ss_pred ecCC-CeEE-EeeCCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCC--CcEEEEEccCCc
Q 042883 480 FLSN-NELA-SASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSET--NEVFVYHKAISK 546 (597)
Q Consensus 480 ~~~~-~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d--~~i~iwd~~~~~ 546 (597)
++++ +.|+ +......|.+.++..+.....+. +.. ...++|+|.+|+-...+ ..|..-++..+.
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 4555 4444 44446778888877654433332 222 23467998887765443 355555555443
No 424
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.48 E-value=5.2 Score=37.79 Aligned_cols=147 Identities=14% Similarity=0.055 Sum_probs=79.5
Q ss_pred CCceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeee--eEE----eeccceeEEEEeCCC---CCceEEeecCCCcccC
Q 042883 378 RSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSV--MEY----EEHEKRAWSVDFSCT---EPSMLVSGSDDCKVGS 448 (597)
Q Consensus 378 ~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~~l~s~~~d~~~~~ 448 (597)
-...+.|+|.| ++.++++--..|.|++++..++... ..+ .........|+++|+ ++.+.++-+..
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~----- 104 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA----- 104 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-----
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-----
Confidence 34678999999 6776666554899999986655432 111 122456789999983 35555542211
Q ss_pred CCCeEEEEEccCCC-------cce---eeec-cCCCceEEEEecCCCeEEEe-eC-------------CCcEEEEEcCCC
Q 042883 449 ADHHIHYYDLRNIS-------QPL---HVFN-GHKKAVSYVKFLSNNELASA-ST-------------DSSLRLWDVKEN 503 (597)
Q Consensus 449 ~d~~i~i~d~~~~~-------~~~---~~~~-~~~~~v~~v~~~~~~~l~s~-~~-------------d~~v~iwd~~~~ 503 (597)
.++.|.-|...... ... ..+. ........|+|.|++.|+.+ +. .|.|.-++....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 12335556554310 111 1121 11223467999999554443 31 244444454321
Q ss_pred ----c---ceeee-eCCCCceeEEEEeecCCEEEEE
Q 042883 504 ----L---PLHTF-RGHTNEKNFVGLTVNNEYIACG 531 (597)
Q Consensus 504 ----~---~~~~~-~~~~~~v~~v~~s~~g~~l~~~ 531 (597)
. ....+ .+|.+ ...++|+|+|.++++-
T Consensus 185 ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEE
T ss_pred ccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEe
Confidence 0 01111 24443 4689999998866654
No 425
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.46 E-value=5.9 Score=38.31 Aligned_cols=160 Identities=11% Similarity=-0.015 Sum_probs=75.1
Q ss_pred CCcEEEEEEcC-CCCEEEEeeCCCc--EEEEecccCccCCccCCCCceEec--------CCCceeEEEEecCC-CCEEEE
Q 042883 329 ANIISSIEFDR-DDELFASAGVSRR--IKIFEFSSVVNEPRDVHYPMVEMP--------TRSKLSCLSWNKYT-KNLIAS 396 (597)
Q Consensus 329 ~~~v~~i~~~~-~~~~l~t~~~d~~--v~iw~~~~~~~~~~~~~~~~~~~~--------~~~~i~~v~~~~~~-~~~l~s 396 (597)
...|.+|+++| +...|.+++..|. -.||.................... ....|.++++.|.+ ...+++
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 35799999998 3344545544440 123333222121111111000000 12357889998744 566666
Q ss_pred eeCCCcEEEEeCCCCeeeeEEee-------------------ccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEE
Q 042883 397 SDYDGIVTIWDVTTSQSVMEYEE-------------------HEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYD 457 (597)
Q Consensus 397 ~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d 457 (597)
+...+.|...+ ..+..-..+.. ....+.+|.+.|.+...+..+..++ .|...
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~g-------gl~~s- 204 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSG-------GVFES- 204 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETB-------EEEEE-
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCC-------CEEEE-
Confidence 66666666554 22322222211 1235788999874444333332111 13322
Q ss_pred ccCCCcceeeecc-----C--------CCceEEEEecCC--CeEEEeeCCCcEEEEE
Q 042883 458 LRNISQPLHVFNG-----H--------KKAVSYVKFLSN--NELASASTDSSLRLWD 499 (597)
Q Consensus 458 ~~~~~~~~~~~~~-----~--------~~~v~~v~~~~~--~~l~s~~~d~~v~iwd 499 (597)
...++.-..+.. + ...+..+.++|. +.|+++...+ |...+
T Consensus 205 -~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 205 -TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp -SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred -CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 222222222210 0 124788999886 7777776554 44443
No 426
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.17 E-value=0.065 Score=50.17 Aligned_cols=63 Identities=17% Similarity=0.444 Sum_probs=46.8
Q ss_pred CCcccccccccccccc-cccccccccHHH--HHHhhcCCC--CCCCCCCCCccccccchHHHHHHHHH
Q 042883 37 RDTLCPICKQLMTDAF-MTACGHSFCYTC--IFTHLRNKS--DCPCCGCHLTCKHIFPNLLLNKLLKK 99 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~-~l~CgH~FC~~C--l~~~~~~~~--~CP~Cr~~~~~~~l~~n~~~~~~~~~ 99 (597)
-.|.|||-+..+..|+ ...|.|.-|..- +..+..... .||+|.+.+...+|....++..+++.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 3488999999999996 556999955542 222222233 39999999999999988887777653
No 427
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.13 E-value=5.1 Score=36.66 Aligned_cols=219 Identities=11% Similarity=-0.013 Sum_probs=106.6
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
.|..|+....- .++. . ||.|..|-........ .+. .....|..|+... ...++. . ||.|+.|-...
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg----~p~---~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLT----MPA---ATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTS----CCG---GGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCC----CCc---cCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCC
Confidence 45566654332 2333 4 8999999765431111 111 1123566676553 334444 4 89999997654
Q ss_pred CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEee
Q 042883 411 SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASAS 490 (597)
Q Consensus 411 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~ 490 (597)
...+..-..-...|..++... ...++++ + |.|+.|-....++.-.. ......|..++.-....++. .
T Consensus 91 ~Gqlg~P~~~~~~v~~ia~G~-~hs~al~---~-------G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G~~~~~~l-~ 157 (282)
T 3qhy_B 91 DGQTTVPAEARSGVDAIAAGA-WASYALK---D-------GKVIAWGDDSDGQTTVP-AEAQSGVTALDGGVYTALAV-K 157 (282)
T ss_dssp TSTTCCCGGGSSSEEEEEEET-TEEEEEE---T-------TEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSEEEEE-E
T ss_pred CCCCCCCcccCCCeEEEECcC-CEEEEEe---C-------CeEEEecCCCCCcCCCC-ccCCCCeEEEEcccCEEEEE-E
Confidence 221111011123566676653 2223332 3 44899977653332111 11234577776554433433 3
Q ss_pred CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceE
Q 042883 491 TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFIS 570 (597)
Q Consensus 491 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 570 (597)
||.|..|-......+..-......|..|+. ...+.++- .||.|+.|-......+..-. . ....|.
T Consensus 158 -~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~--G~~hs~al-~~G~v~~wG~n~~gqlg~p~-~----------~~~~v~ 222 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTTVPAEAQSGVDDVAG--GIFHSLAL-KDGKVIAWGDNRYKQTTVPT-E----------ALSGVS 222 (282)
T ss_dssp -TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEE-ETTEEEEEECCTTSTTCCCG-G----------GGSSCC
T ss_pred -CCEEEEecCCCCCCCCCceecCCCeEEEEe--cCCEEEEE-ECCeEEEEECCCCCCCCCCc-c----------cCCCce
Confidence 799999976542222111111234555544 33333333 58999999765432221100 0 022466
Q ss_pred EEEEccCCCeEEEecCcccEEEEE
Q 042883 571 AVCWKSDSPTMLTANRKGAIKVLV 594 (597)
Q Consensus 571 ~v~~~~~~~~l~s~~~dg~v~iwd 594 (597)
.|+-.... .++. . ||.|+.|-
T Consensus 223 ~i~~G~~h-~~al-~-~g~v~~wG 243 (282)
T 3qhy_B 223 AIASGEWY-SLAL-K-NGKVIAWG 243 (282)
T ss_dssp EEEECSSC-EEEE-E-TTEEEEES
T ss_pred EEEcCCCE-EEEE-E-CCEEEEec
Confidence 66654332 2333 3 88888874
No 428
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.47 E-value=0.094 Score=48.97 Aligned_cols=63 Identities=21% Similarity=0.454 Sum_probs=46.5
Q ss_pred CCCcccccccccccccc-cccccccccHH--HHHHhhcCCC--CCCCCCCCCccccccchHHHHHHHH
Q 042883 36 DRDTLCPICKQLMTDAF-MTACGHSFCYT--CIFTHLRNKS--DCPCCGCHLTCKHIFPNLLLNKLLK 98 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~-~l~CgH~FC~~--Cl~~~~~~~~--~CP~Cr~~~~~~~l~~n~~~~~~~~ 98 (597)
.-.|.|||-+..++.|+ ...|.|.-|.. =+..+..... .||+|.+.+...+|.-..++..+++
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 33578999999999996 55699995554 2223222333 3999999999999998877777765
No 429
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=88.59 E-value=0.14 Score=37.80 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.5
Q ss_pred cccccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 49 TDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 49 ~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
..|+...||+.|+ .-+.....||.|+..--
T Consensus 66 ~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred ECcChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 3568889999992 23445567999987653
No 430
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.20 E-value=19 Score=34.61 Aligned_cols=183 Identities=5% Similarity=-0.036 Sum_probs=86.4
Q ss_pred CEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCC----cEEEEeCCCCeeeeEE
Q 042883 342 ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDG----IVTIWDVTTSQSVMEY 417 (597)
Q Consensus 342 ~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~ 417 (597)
..|.+|+..| +.+++........ ...........|.+|++.|.+...|+++...| .|...+ ..+..-..+
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W----~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~ 96 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTW----ELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEA 96 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSE----EEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEEC
T ss_pred CEEEEEecCc-eEEEECCCCCCCc----eECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceEC
Confidence 4577777777 5555543210111 00001123457999999985555666666555 454442 233221111
Q ss_pred e------e--------ccceeEEEEeCCCC-CceEEeecCCCcccCCCCeEEEEEccCCCcceeeec-------------
Q 042883 418 E------E--------HEKRAWSVDFSCTE-PSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFN------------- 469 (597)
Q Consensus 418 ~------~--------~~~~v~~~~~~~~~-~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~------------- 469 (597)
. . ....|.++++.|.+ ...+..++..+ .|... ...+..-..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~g-------gl~~S--~DgG~tW~~~~~~~~~p~~~~~~~ 167 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQ-------GLFRS--TDHGASWEPVAGFNDHPMRRAWTG 167 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETT-------EEEEE--SSTTSBCEECHHHHTCTTHHHHHC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCC-------cEEEE--cCCCCCeEECcCccCCcccccccc
Confidence 1 0 11257889998743 44444443222 13333 22222222211
Q ss_pred ------cCCCceEEEEecCC--CeEEEeeCCCcEEEEEcCCCcceeeeeC-----C--------CCceeEEEEeec-CCE
Q 042883 470 ------GHKKAVSYVKFLSN--NELASASTDSSLRLWDVKENLPLHTFRG-----H--------TNEKNFVGLTVN-NEY 527 (597)
Q Consensus 470 ------~~~~~v~~v~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~--------~~~v~~v~~s~~-g~~ 527 (597)
.....+.+|.++|. +.++.+..++.|...+ ..++--..+.. + ...+..+.++|+ ...
T Consensus 168 ~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~ 246 (394)
T 3b7f_A 168 GEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDI 246 (394)
T ss_dssp CC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTE
T ss_pred ccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCE
Confidence 11245788999873 5566665555444432 22222222110 0 124778889886 456
Q ss_pred EEEEeCCCcEEEEE
Q 042883 528 IACGSETNEVFVYH 541 (597)
Q Consensus 528 l~~~~~d~~i~iwd 541 (597)
|++++..+ |...+
T Consensus 247 l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 247 LYQQNHCG-IYRMD 259 (394)
T ss_dssp EEEEETTE-EEEEE
T ss_pred EEEEcCCe-EEEeC
Confidence 66665544 44443
No 431
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.32 E-value=18 Score=33.35 Aligned_cols=175 Identities=7% Similarity=0.025 Sum_probs=87.8
Q ss_pred EEEcCCCCEEEEeeCC--------------CcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEee--
Q 042883 335 IEFDRDDELFASAGVS--------------RRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSD-- 398 (597)
Q Consensus 335 i~~~~~~~~l~t~~~d--------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~-- 398 (597)
--|+++|.+|+-...+ ..|+..++++. ....... .. +..|++ .++.|+-..
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~--------~~~~l~~--~~--~~~~s~-~g~~Iy~~~~~ 124 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH--------GSTVLDP--DP--CIYASL-IGNYIYYLHYD 124 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC--------CCEEEEC--SC--EEEEEE-ETTEEEEEEES
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC--------cceEeec--CC--ccEEEE-eCCEEEEEeec
Confidence 3467888888766543 35666666654 1111111 11 235677 455555443
Q ss_pred --CCCcEEEEeCCCCeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceE
Q 042883 399 --YDGIVTIWDVTTSQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVS 476 (597)
Q Consensus 399 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 476 (597)
.+..|+..++... ....+..+.. .+++|.+..+..+.. + ...|++.++.. +.....+. +...
T Consensus 125 ~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~--g-----~~~Iy~~~l~g-~~~~~l~~---~~~~ 188 (302)
T 3s25_A 125 TQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNP--K-----NGQLYRYDTAS-QSEALFYD---CNCY 188 (302)
T ss_dssp SSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECT--T-----TCCEEEEETTT-TEEEEEEC---SCEE
T ss_pred CCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeC--C-----CceEEEEECCC-CCEEEEeC---CCcc
Confidence 3345666666543 3334433322 345663444444433 1 23478888764 32222232 2222
Q ss_pred EEEecCC-CeEEEeeCC--CcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEe--CCCcEEEEEccC
Q 042883 477 YVKFLSN-NELASASTD--SSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGS--ETNEVFVYHKAI 544 (597)
Q Consensus 477 ~v~~~~~-~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d~~i~iwd~~~ 544 (597)
..+.|+ +.|+-...+ ..|..-++..+. ...+.. ..+ ..|+|+|.+|+-++ ..+.|..-++..
T Consensus 189 -~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 189 -KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp -EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred -ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 235577 666655433 346556665443 333331 222 44888998887653 235566666543
No 432
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.20 E-value=7.6 Score=42.62 Aligned_cols=40 Identities=5% Similarity=-0.106 Sum_probs=33.3
Q ss_pred ceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 515 EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
.+.+++..++..++++-+.|+++++|++.+++.+.+....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4556677778889999999999999999999988876654
No 433
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=86.29 E-value=0.1 Score=29.70 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=11.9
Q ss_pred CCccccccccccccccc
Q 042883 37 RDTLCPICKQLMTDAFM 53 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P~~ 53 (597)
|-++||||+..|..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 34778888888777643
No 434
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.08 E-value=6 Score=39.65 Aligned_cols=122 Identities=9% Similarity=0.114 Sum_probs=69.9
Q ss_pred EEEEeCCC----CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCC-----Ccc-------ee
Q 042883 403 VTIWDVTT----SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNI-----SQP-------LH 466 (597)
Q Consensus 403 i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~-----~~~-------~~ 466 (597)
|.|.|.+. +..+..+-.-......+.++| ++.+++.++. .+.++.++|++.. .+. ..
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsP-DGkyi~v~GK------LsptvtV~d~~k~~~~~~~k~~~~~~~~~a 372 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSS-DGKYFIAAGK------LSPTCSMIAIDKLPDLFAGKLADPRDVIVG 372 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECT-TSCEEEEECT------TSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCC-CCCEEEEcCC------CCCeEEEEEeehhhhhhhccccCcccceEe
Confidence 55556544 222222223345567889999 7777666653 3556999998741 111 11
Q ss_pred eeccCCCceEEEEecCCCeE-EEeeCCCcEEEEEcCCC----------cceeeeeCCCCceeEE-----EEeecCCEEEE
Q 042883 467 VFNGHKKAVSYVKFLSNNEL-ASASTDSSLRLWDVKEN----------LPLHTFRGHTNEKNFV-----GLTVNNEYIAC 530 (597)
Q Consensus 467 ~~~~~~~~v~~v~~~~~~~l-~s~~~d~~v~iwd~~~~----------~~~~~~~~~~~~v~~v-----~~s~~g~~l~~ 530 (597)
... -.-...-.+|.+++.. .+--.|..|..|++... ..+..+.-|-.+-... .-.++|++|++
T Consensus 373 e~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ 451 (638)
T 3sbq_A 373 EPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVA 451 (638)
T ss_dssp CCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEE
T ss_pred ecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEE
Confidence 111 2345677889988654 44558999999998642 3445555444322111 12567888877
Q ss_pred Ee
Q 042883 531 GS 532 (597)
Q Consensus 531 ~~ 532 (597)
..
T Consensus 452 ln 453 (638)
T 3sbq_A 452 LS 453 (638)
T ss_dssp EE
T ss_pred ec
Confidence 63
No 435
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=84.63 E-value=0.32 Score=33.33 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=29.5
Q ss_pred ccccccccccccc----ccccccc---cc--cHHHHHHhhcCCCCCCCCCCCCccccccch
Q 042883 39 TLCPICKQLMTDA----FMTACGH---SF--CYTCIFTHLRNKSDCPCCGCHLTCKHIFPN 90 (597)
Q Consensus 39 l~C~IC~~~f~~P----~~l~CgH---~F--C~~Cl~~~~~~~~~CP~Cr~~~~~~~l~~n 90 (597)
..||||...++.. -+|+=+. .| =-.-+..+-.-.+.||.|+..+-.+.|+.+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChH
Confidence 4699999988853 1222221 00 001111111233459999999998888764
No 436
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.34 E-value=29 Score=33.07 Aligned_cols=165 Identities=11% Similarity=0.131 Sum_probs=87.2
Q ss_pred cEEEEeCCCC--eeeeEEee------ccceeEEEEeC---CC---CCceEEeecCCCcccCCCCeEEEEEccCCCcceee
Q 042883 402 IVTIWDVTTS--QSVMEYEE------HEKRAWSVDFS---CT---EPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHV 467 (597)
Q Consensus 402 ~i~iwd~~~~--~~~~~~~~------~~~~v~~~~~~---~~---~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~ 467 (597)
.|.+||+.++ +.++.+.- ..+.+.++++. |. ++.++..+.. ..+.|.|||+.+ ++..+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~------~~~gLIVydl~~-~~swRv 196 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF------LRGALFIYDHKK-QDSWNV 196 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET------TTTEEEEEETTT-TEEEEE
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC------CCCcEEEEECCC-CcEEEE
Confidence 5889999998 88877642 23457777776 21 1233333221 134599999987 433332
Q ss_pred ec--------------cC----CCceEEEEecCC-----CeEEEeeCCCcEEEEEcC-----CC---cceeeeeCCC---
Q 042883 468 FN--------------GH----KKAVSYVKFLSN-----NELASASTDSSLRLWDVK-----EN---LPLHTFRGHT--- 513 (597)
Q Consensus 468 ~~--------------~~----~~~v~~v~~~~~-----~~l~s~~~d~~v~iwd~~-----~~---~~~~~~~~~~--- 513 (597)
.. +. ...+..++.+|+ ..|.-....+ -++|.+. .. ..+..+ +..
T Consensus 197 ~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~ 274 (381)
T 3q6k_A 197 THPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKY 274 (381)
T ss_dssp ECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTT
T ss_pred ccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCC
Confidence 21 10 135677777775 2343333332 1333332 11 112222 222
Q ss_pred CceeEEEEe-ecCCEEEEEeCCCcEEEEEccC-C---ccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEe
Q 042883 514 NEKNFVGLT-VNNEYIACGSETNEVFVYHKAI-S---KPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTA 584 (597)
Q Consensus 514 ~~v~~v~~s-~~g~~l~~~~~d~~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 584 (597)
..-..++++ .+|.++++--..+.|..|+..+ . .....+.... --..+.++.+.++|.+.+..
T Consensus 275 s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~---------~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 275 NDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS---------RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT---------TCCSEEEEEECTTSCEEEEE
T ss_pred CCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC---------CccccCeEEECCCCeEEEEE
Confidence 222345665 5677777777788999999865 1 1111211110 14467788887777665544
No 437
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.34 E-value=8.4 Score=38.13 Aligned_cols=109 Identities=6% Similarity=0.002 Sum_probs=61.8
Q ss_pred CceEEEEecCCC--eEEEeeCCCcEEEEEcCCC---cceeeee-----C----CCCceeEEEEeec----CCEEEEEeC-
Q 042883 473 KAVSYVKFLSNN--ELASASTDSSLRLWDVKEN---LPLHTFR-----G----HTNEKNFVGLTVN----NEYIACGSE- 533 (597)
Q Consensus 473 ~~v~~v~~~~~~--~l~s~~~d~~v~iwd~~~~---~~~~~~~-----~----~~~~v~~v~~s~~----g~~l~~~~~- 533 (597)
...+.|+|.|++ .++++...|.|++++.... ..+..+. + .......|+|+|+ +.++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 356899999995 4777888999999975432 1222221 1 1346788999996 544444332
Q ss_pred -C----------CcEEEEEccCCc--------cccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcc
Q 042883 534 -T----------NEVFVYHKAISK--------PAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKG 588 (597)
Q Consensus 534 -d----------~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg 588 (597)
+ ..|.-|.+..+. ....+.... ....| .-..|+|.|||.++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~-----~~~~H--~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE-----LHRKH--LGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE-----SSSSS--CEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC-----CCCcc--cCCcEeECCCCcEEEEeCCCC
Confidence 1 145556654321 111111110 01223 357899999998877765443
No 438
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.93 E-value=1.8 Score=30.20 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=25.5
Q ss_pred cCCCCCccccccccccccccccc---ccccccHHHHHHh
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTA---CGHSFCYTCIFTH 68 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~---CgH~FC~~Cl~~~ 68 (597)
+++..+-.|+||-. |..-..+| |+-.|--.||++.
T Consensus 10 e~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 44556778999863 44445555 8999999999985
No 439
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=83.88 E-value=49 Score=35.33 Aligned_cols=153 Identities=7% Similarity=0.009 Sum_probs=74.9
Q ss_pred CCcEEEEEEcCC-CCEEEEeeCCCcEEEEecccCccCCccCCCCce-EecCCCceeEEEEecCCCCEEEEeeCCCc----
Q 042883 329 ANIISSIEFDRD-DELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV-EMPTRSKLSCLSWNKYTKNLIASSDYDGI---- 402 (597)
Q Consensus 329 ~~~v~~i~~~~~-~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~~~~~~~l~s~~~dg~---- 402 (597)
.+.|.+|+++|. ...++.++..+.|...+ .+............ ..-....+.+|++.|.+.+.++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999995 45666677667654443 22111111110000 00013468999999854555655543311
Q ss_pred EEEEe-CCCCeeeeEEeec-------c--ceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeecc--
Q 042883 403 VTIWD-VTTSQSVMEYEEH-------E--KRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNG-- 470 (597)
Q Consensus 403 i~iwd-~~~~~~~~~~~~~-------~--~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~-- 470 (597)
-.||- .+.|+.-..+... . ..+..++++|.++..+..+...+ .||-....++.-..+..
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~---------gl~~S~DgG~TW~~~~~~~ 162 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE---------GIWKSSDRAKTWTNVTSIP 162 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS---------CEEEESSTTSSCEEETTSC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC---------CEEEECCCCcccCCCccCc
Confidence 23333 3334322222110 0 13556888875556665554222 13333332332222221
Q ss_pred ----CCCceEEEEecCC--CeEEEeeCC
Q 042883 471 ----HKKAVSYVKFLSN--NELASASTD 492 (597)
Q Consensus 471 ----~~~~v~~v~~~~~--~~l~s~~~d 492 (597)
....+..+.++|. +.++++..+
T Consensus 163 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 163 DAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1245788888875 566666654
No 440
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.61 E-value=6.8 Score=38.03 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=5.3
Q ss_pred HHHHHhHhhHH
Q 042883 254 QRVRAQLNDLK 264 (597)
Q Consensus 254 ~~l~~~~~~l~ 264 (597)
..++++|+++.
T Consensus 179 ~~~QKQLeQv~ 189 (562)
T 3ghg_A 179 EDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34555555443
No 441
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.75 E-value=2.7 Score=30.49 Aligned_cols=48 Identities=25% Similarity=0.550 Sum_probs=29.4
Q ss_pred cCCCCCccccccccccccccccc-----cc-ccccHHHHHHhhc---CCCCCCCCCCCCc
Q 042883 33 TEVDRDTLCPICKQLMTDAFMTA-----CG-HSFCYTCIFTHLR---NKSDCPCCGCHLT 83 (597)
Q Consensus 33 ~~~~~~l~C~IC~~~f~~P~~l~-----Cg-H~FC~~Cl~~~~~---~~~~CP~Cr~~~~ 83 (597)
..-.+...| ||.+.... -++- |. .-|-..|+. +-. +...||.|+..-.
T Consensus 31 ~d~~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg-l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG-LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCSCCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT-CSSCCCSSCCCTTTCCCCS
T ss_pred cCCCCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC-cCcCCCCCEECcCccCcCC
Confidence 344567888 99997654 3555 43 357777775 221 2234999987543
No 442
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.34 E-value=35 Score=31.80 Aligned_cols=206 Identities=7% Similarity=0.028 Sum_probs=106.5
Q ss_pred CCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCC-ccCCCC---ceEecCCCceeEEEEecC--CCCEEEEeeCCCc
Q 042883 329 ANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEP-RDVHYP---MVEMPTRSKLSCLSWNKY--TKNLIASSDYDGI 402 (597)
Q Consensus 329 ~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~-~~~~~~---~~~~~~~~~i~~v~~~~~--~~~~l~s~~~dg~ 402 (597)
.+.+..+........|+.-+..|.++......-.... ...-.+ ...+.....|.++...++ +..+++..+.+|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 4456665555566677777778877666543321110 000011 111223445555544331 3678999999999
Q ss_pred EEEEeCCCCe-------eeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEcc--C---CCc-----ce
Q 042883 403 VTIWDVTTSQ-------SVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLR--N---ISQ-----PL 465 (597)
Q Consensus 403 i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~--~---~~~-----~~ 465 (597)
++...+.... ....+.. .+.+..+........+++ .+. .|.+..+... . .+. ..
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill-~T~-------~G~~~rf~~~~~eip~~gr~a~Gv~~ 191 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLL-VSA-------NGQSIRFSATDEALRPMGRATSGVQG 191 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEE-EET-------TSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEE-EEC-------CCeEEEEECcccccCcCCcCCCCeee
Confidence 9988764321 1222333 233444433332334443 333 3446666554 2 111 11
Q ss_pred eeeccCCCceEEEEecCC-CeEEEeeCCCcEEEEEcCCC-------cceeeee--CCCCceeEEEEeecCCEEEEEeCCC
Q 042883 466 HVFNGHKKAVSYVKFLSN-NELASASTDSSLRLWDVKEN-------LPLHTFR--GHTNEKNFVGLTVNNEYIACGSETN 535 (597)
Q Consensus 466 ~~~~~~~~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~~-------~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~d~ 535 (597)
..+. ....|.++...++ ..++..+..|.++.-.+..- +-+..+. ...+.+-.+....+...++..+.+|
T Consensus 192 i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 192 MRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp SCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred ecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 1122 2345666655444 78999999999988876431 2222222 2123344444444455677777888
Q ss_pred cEEEEEccC
Q 042883 536 EVFVYHKAI 544 (597)
Q Consensus 536 ~i~iwd~~~ 544 (597)
.+.-++...
T Consensus 271 ~~ir~~~~~ 279 (327)
T 3uc1_A 271 GVIRTAARQ 279 (327)
T ss_dssp CEEEEEGGG
T ss_pred eEEEEehhh
Confidence 888887654
No 443
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=81.06 E-value=34 Score=31.53 Aligned_cols=198 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC---------CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEc
Q 042883 388 KYTKNLIASSDYDGIVTIWDVTT---------SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDL 458 (597)
Q Consensus 388 ~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~ 458 (597)
| +..++++.+.+|.|+--.+.. +..-..+.....-+..+..+. ...+++..+.... ..+.++++
T Consensus 1 ~-~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~-~~~ll~fT~~G~~-----~~~~~~el 73 (307)
T 1zi0_A 1 T-QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT-HDHILCFSSRGRV-----YSMKVYQL 73 (307)
T ss_dssp C-CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEET-TCEEEEEETTSEE-----EEEEGGGS
T ss_pred C-CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECC-CCEEEEEECCCEE-----EEEEhhHC
Q ss_pred cCCCc--------ceeeeccCCCceEEEE---ecCCCeEEEeeCCCcEEEEEcC-------CCcceeeeeCCCCceeEEE
Q 042883 459 RNISQ--------PLHVFNGHKKAVSYVK---FLSNNELASASTDSSLRLWDVK-------ENLPLHTFRGHTNEKNFVG 520 (597)
Q Consensus 459 ~~~~~--------~~~~~~~~~~~v~~v~---~~~~~~l~s~~~d~~v~iwd~~-------~~~~~~~~~~~~~~v~~v~ 520 (597)
...+. .+..+.....-+..+. +.++..++..+.+|.++-..+. .+.....+..+ ..+-.+.
T Consensus 74 p~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~ 152 (307)
T 1zi0_A 74 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVD 152 (307)
T ss_dssp CCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEE
T ss_pred cCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEE
Q ss_pred EeecCCEEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 521 LTVNNEYIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 521 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
...+...|+..+.+|.+..++...-........+...-.... ...|.++...+++..|+..+..|.++-.+++
T Consensus 153 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~---~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 153 LTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE---GDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT---TCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC---CCEEEEEEEecCCCEEEEEEcCCceEEEEHH
No 444
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.35 E-value=26 Score=38.36 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.0
Q ss_pred CceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEe
Q 042883 379 SKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYE 418 (597)
Q Consensus 379 ~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 418 (597)
..+.+++..+ +..++++-+.|+++++|++.+++++.+..
T Consensus 236 ~~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3566777776 67899999999999999999999887653
No 445
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=79.98 E-value=0.62 Score=33.55 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=10.8
Q ss_pred cccHHHHHHhhc
Q 042883 59 SFCYTCIFTHLR 70 (597)
Q Consensus 59 ~FC~~Cl~~~~~ 70 (597)
-|||.||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 446
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=79.91 E-value=0.62 Score=33.47 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=10.8
Q ss_pred cccHHHHHHhhc
Q 042883 59 SFCYTCIFTHLR 70 (597)
Q Consensus 59 ~FC~~Cl~~~~~ 70 (597)
-||+.||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 447
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=78.75 E-value=38 Score=30.70 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=94.8
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCCC
Q 042883 331 IISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTT 410 (597)
Q Consensus 331 ~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 410 (597)
.|..|+...+- .++. . ||.|..|-........ .+.. -...|..|+... .+.+.-. ||.|+.|-...
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg----~P~~---~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT----VPAE---ARSGVDAIAAGA---WASYALK-DGKVIAWGDDS 129 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC----CCGG---GSSSEEEEEEET---TEEEEEE-TTEEEEEECCT
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC----CCcc---cCCCeEEEECcC---CEEEEEe-CCeEEEecCCC
Confidence 45566665432 2333 4 8999999765431111 1111 124677777653 3333334 89999997654
Q ss_pred CeeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccCCCcceeeeccCCCceEEEEecCCCeEEEee
Q 042883 411 SQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASAS 490 (597)
Q Consensus 411 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~ 490 (597)
...+..-......|..++... ...++++ ||.|+.|-....++.-.. ......|..++--....++.
T Consensus 130 ~gqlg~~~~~~~~i~~i~~G~-~~~~~l~----------~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~hs~al-- 195 (282)
T 3qhy_B 130 DGQTTVPAEAQSGVTALDGGV-YTALAVK----------NGGVIAWGDNYFGQTTVP-AEAQSGVDDVAGGIFHSLAL-- 195 (282)
T ss_dssp TSTTSCCGGGGSSEEEEEECS-SEEEEEE----------TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSEEEEE--
T ss_pred CCcCCCCccCCCCeEEEEccc-CEEEEEE----------CCEEEEecCCCCCCCCCc-eecCCCeEEEEecCCEEEEE--
Confidence 221111111234566666543 2222221 344888876653332111 11134577777655544555
Q ss_pred CCCcEEEEEcCCCcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccc
Q 042883 491 TDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPA 548 (597)
Q Consensus 491 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 548 (597)
.||.|+.|-......+..-......|..|+.... ..++ -. ||.|+.|-.....++
T Consensus 196 ~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~a-l~-~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 196 KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLA-LK-NGKVIAWGSSRTAPS 250 (282)
T ss_dssp ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEE-EE-TTEEEEESTTCCCCG
T ss_pred ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEE-EE-CCEEEEecCCCCccc
Confidence 5999999976542222111111234555654322 2333 33 899999976654443
No 448
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.95 E-value=24 Score=27.91 Aligned_cols=31 Identities=3% Similarity=-0.021 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 174 IQADLRCIEEDVYAVEKHKIELYRARGRCLA 204 (597)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 204 (597)
....++.++.++..+++.+..|+.+...+..
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333434444444444444444433
No 449
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.38 E-value=75 Score=33.36 Aligned_cols=202 Identities=12% Similarity=0.121 Sum_probs=98.8
Q ss_pred EEEE-EcCCCCEEEEeeC-----CCcEEEEecccCccCCccCCCCceEecCC-----CceeEEEEecCCCCEEEEe----
Q 042883 333 SSIE-FDRDDELFASAGV-----SRRIKIFEFSSVVNEPRDVHYPMVEMPTR-----SKLSCLSWNKYTKNLIASS---- 397 (597)
Q Consensus 333 ~~i~-~~~~~~~l~t~~~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~~l~s~---- 397 (597)
..+. ++|++++++.+-+ -..|+++|+.++........ +. ... .....++|.. ++.++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~---~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~ 206 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI---TNSGKLLEGKFTYPTWIN-KDTIIFNLVLHK 206 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB---CTTCCBCCEETCCEEEEE-TTEEEECCCCST
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc---cccccccccccceeeEEC-CCEEEEEeCCCC
Confidence 3455 8899988776533 24699999988721111111 00 000 0123457874 44444432
Q ss_pred ------eCCCcEEEEeCCCCe--eeeEEeecccee-EEEEeCCCCCc----eEEeecCCCcccCCCCeEEEEEccCCCcc
Q 042883 398 ------DYDGIVTIWDVTTSQ--SVMEYEEHEKRA-WSVDFSCTEPS----MLVSGSDDCKVGSADHHIHYYDLRNISQP 464 (597)
Q Consensus 398 ------~~dg~i~iwd~~~~~--~~~~~~~~~~~v-~~~~~~~~~~~----~l~s~~~d~~~~~~d~~i~i~d~~~~~~~ 464 (597)
+....|+.|.+.+.. -...+.+....+ .+...+++++. .+++.+.+. ....+++.|...+...
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~ 282 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDF----YNYDNYILDTKYKNLK 282 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSS----SCEEEEEEECSSSSCE
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEeccc----CceeEEEEcCCCCCCc
Confidence 123468888876542 223343333332 23444553332 345443222 2355777776532222
Q ss_pred eeeeccCCCceEEEEecCCCeEEE-e----------eCCCcEEEEEcCCCc-------ceee-eeC-CCCceeEEEEeec
Q 042883 465 LHVFNGHKKAVSYVKFLSNNELAS-A----------STDSSLRLWDVKENL-------PLHT-FRG-HTNEKNFVGLTVN 524 (597)
Q Consensus 465 ~~~~~~~~~~v~~v~~~~~~~l~s-~----------~~d~~v~iwd~~~~~-------~~~~-~~~-~~~~v~~v~~s~~ 524 (597)
+..+...... .+..+.++.++. . ...+.|.++|+.++. .... +.. ....+..+.|..+
T Consensus 283 ~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 283 LQKINMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp EEECCSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred ceEeecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 2233222221 122334444333 1 146778899987632 2222 222 2335567777655
Q ss_pred CCEEEEEeCCC--cEEEEEccCCc
Q 042883 525 NEYIACGSETN--EVFVYHKAISK 546 (597)
Q Consensus 525 g~~l~~~~~d~--~i~iwd~~~~~ 546 (597)
.++++...++ .|.++++.+++
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTE
T ss_pred -EEEEEEEECCEEEEEEEECCCCc
Confidence 5666666666 46777776664
No 450
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=76.19 E-value=18 Score=25.47 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 156 LLNFLHCLRKQKLEELNEIQADLRCIEEDVYAVEKHKIEL 195 (597)
Q Consensus 156 l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 195 (597)
-+++|..|++++..++..-.+.++.+++.+...++.+..|
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666555555554555555555544444444443
No 451
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.50 E-value=51 Score=30.44 Aligned_cols=110 Identities=11% Similarity=0.178 Sum_probs=65.7
Q ss_pred CCeEEEeeCCCcEEEEEcCC-------CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccCCccccccccCC
Q 042883 483 NNELASASTDSSLRLWDVKE-------NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS 555 (597)
Q Consensus 483 ~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 555 (597)
+..++..+..|.++...+.. |.....+.. ...+-.+....++..|+..+.+|.+..+....-........+.
T Consensus 114 ~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv 192 (312)
T 1suu_A 114 DAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV 192 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE
T ss_pred CCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe
Confidence 46788899999999888743 222233333 4455555555556678888899999999875422221111111
Q ss_pred CCCCCcCcCCCcceEEEEEccCCCeEEEecCcccEEEEEec
Q 042883 556 DADHVDDDMGSYFISAVCWKSDSPTMLTANRKGAIKVLVLA 596 (597)
Q Consensus 556 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~~~dg~v~iwd~~ 596 (597)
..-... ....|.++..-.++..|++.+.+|..+..+++
T Consensus 193 ~~i~L~---~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 193 CGMKLK---EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp ECCCCC---TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EeEEeC---CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 000000 13456666555556678888888988887764
No 452
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=74.87 E-value=0.25 Score=35.49 Aligned_cols=41 Identities=29% Similarity=0.614 Sum_probs=28.3
Q ss_pred CcccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 38 DTLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
++.||+|...+.. . =|+.+|..|-..+ .....||.|.+++.
T Consensus 32 ~~~CP~Cq~eL~~-~---g~~~hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-D---NGHARCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE-E---TTEEEETTTCCEE-EEEEECTTTCSBCE
T ss_pred cccCccCCCccee-c---CCEEECccccchh-hccccCcchhhHHH
Confidence 4899999977653 1 2455588886543 23345999999886
No 453
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=74.25 E-value=1 Score=34.73 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=23.5
Q ss_pred Cccccccccccccc----ccccccccccHHHHHHhh
Q 042883 38 DTLCPICKQLMTDA----FMTACGHSFCYTCIFTHL 69 (597)
Q Consensus 38 ~l~C~IC~~~f~~P----~~l~CgH~FC~~Cl~~~~ 69 (597)
...|..|...|.-- ..-.||..||..|.....
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 46899999998743 345699999999976543
No 454
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.70 E-value=30 Score=27.36 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 042883 168 LEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKLRTFD 210 (597)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 210 (597)
.+++..+...+.....++..+++..+.+..+...+..++.+..
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777776677777777777777777777666665553
No 455
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=72.48 E-value=69 Score=32.65 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=39.6
Q ss_pred ceEEEEecCCCeEEEeeCC-------------CcEEEEEcCCCcceeeeeCC-CCceeEEEEeecCCEEEEE
Q 042883 474 AVSYVKFLSNNELASASTD-------------SSLRLWDVKENLPLHTFRGH-TNEKNFVGLTVNNEYIACG 531 (597)
Q Consensus 474 ~v~~v~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~ 531 (597)
..-.|+|+|.+.|+.+... ..+.+.+..+++....+.+. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3467899999666555432 23555666667766655544 4588999999999887765
No 456
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.29 E-value=29 Score=26.56 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 156 LLNFLHCLRKQKLEELNEIQADLRCIEEDVYAVEKH 191 (597)
Q Consensus 156 l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 191 (597)
|+..++.++.+....+..++..+..++.++.+.+..
T Consensus 27 lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 27 LKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555545555555555555555555444433
No 457
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=72.24 E-value=5.4 Score=26.89 Aligned_cols=46 Identities=22% Similarity=0.617 Sum_probs=30.5
Q ss_pred CCCcccccccccccccccc--cccccccHHHHHHhhcCCC----CCCCCCCCCc
Q 042883 36 DRDTLCPICKQLMTDAFMT--ACGHSFCYTCIFTHLRNKS----DCPCCGCHLT 83 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~~l--~CgH~FC~~Cl~~~~~~~~----~CP~Cr~~~~ 83 (597)
...-.|.||.+-= + .++ .|...|-..|+...+...+ .||.|.....
T Consensus 10 ~~~~~C~vC~~~~-~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDGT-D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCCT-T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCCC-e-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3456699998642 2 222 3889999999975555443 3999976543
No 458
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=71.55 E-value=0.37 Score=33.80 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=24.3
Q ss_pred cccccccccccccccccccccccHHHHHHhhcCCCCCCCCCCCCc
Q 042883 39 TLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLT 83 (597)
Q Consensus 39 l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~ 83 (597)
+.||.|......- =++.+|..|-..+-... .||.|++++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc-cCcchhhHHH
Confidence 6788888665421 11444777765544433 5888887775
No 459
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.23 E-value=30 Score=25.57 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 042883 153 MQILLNFLHCLRKQK---LEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKLRT 208 (597)
Q Consensus 153 ~~~l~~~l~~l~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 208 (597)
++.++..|+.|+.+. .+++..++..+...+......+..+..|..+.+.+...+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554433 33334444444444444444444444444444444444443
No 460
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=70.20 E-value=6.5 Score=26.88 Aligned_cols=26 Identities=27% Similarity=0.729 Sum_probs=19.2
Q ss_pred Cccccccccccc-ccccccccccccHH
Q 042883 38 DTLCPICKQLMT-DAFMTACGHSFCYT 63 (597)
Q Consensus 38 ~l~C~IC~~~f~-~P~~l~CgH~FC~~ 63 (597)
...|..|..-.- -|..-.||.+||..
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CCcChhhCCcccccCeecCCCCEechh
Confidence 357999987533 36667799999974
No 461
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.84 E-value=24 Score=23.95 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 178 LRCIEEDVYAVEKHKIELYRARGR 201 (597)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~ 201 (597)
+++++..+.+.+..+..|+.++..
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 462
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.54 E-value=11 Score=36.66 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042883 147 EEAETNMQILLNFLHCL 163 (597)
Q Consensus 147 ~~~~~~~~~l~~~l~~l 163 (597)
.......++|++++.++
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 33344444455555544
No 463
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.84 E-value=24 Score=23.42 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 167 KLEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAK 205 (597)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 205 (597)
+......++...+.++.+..+++..+..|..+...+...
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555544433
No 464
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=67.74 E-value=42 Score=32.07 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=3.0
Q ss_pred HHHhHhh
Q 042883 256 VRAQLND 262 (597)
Q Consensus 256 l~~~~~~ 262 (597)
++++|++
T Consensus 182 ~QKqLeQ 188 (491)
T 1m1j_A 182 IQKHLTQ 188 (491)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 465
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=67.01 E-value=79 Score=29.12 Aligned_cols=195 Identities=9% Similarity=0.067 Sum_probs=99.8
Q ss_pred CCCCEEEEeeCCCcEEEEecccCccCCccCCCC-ceEecCCCceeEEEEecCCCCEEEEeeCCCcEEEEeCC---CC---
Q 042883 339 RDDELFASAGVSRRIKIFEFSSVVNEPRDVHYP-MVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVT---TS--- 411 (597)
Q Consensus 339 ~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~---~~--- 411 (597)
++..++++.+.+|.|+-..+..-.......... .........+..+.... ....++..+..|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 466788899999999988775441111100000 01112233344444443 45567777778887666542 11
Q ss_pred ---ee---eeEEeeccceeEEEEeCCC--CCceEEeecCCCcccCCCCeEEEEEccCC------CcceeeeccCCCceEE
Q 042883 412 ---QS---VMEYEEHEKRAWSVDFSCT--EPSMLVSGSDDCKVGSADHHIHYYDLRNI------SQPLHVFNGHKKAVSY 477 (597)
Q Consensus 412 ---~~---~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~ 477 (597)
.. ...+. ....|.++...+. +...++..+. +|.++...+... +.....+.. .+.+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~-------~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~ 155 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTA-------SGKIARFESTDFKAVKSRGVIVIKLND-KDFVTS 155 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEET-------TSEEEEEEGGGGCC----CEECBCCCT-TCCEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeC-------CCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEE
Confidence 11 01121 1233444322210 2344444453 444776666421 112222332 345555
Q ss_pred EEecC-CCeEEEeeCCCcEEEEEcCC---------CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEEEEccC
Q 042883 478 VKFLS-NNELASASTDSSLRLWDVKE---------NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAI 544 (597)
Q Consensus 478 v~~~~-~~~l~s~~~d~~v~iwd~~~---------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 544 (597)
+.... +..++..+.+|.+..++... |.....+.. ...|..+..-.++..|++.+..|....+++..
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 55443 47788999999998888643 111222222 33445554444566788888999999888754
No 466
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=66.93 E-value=1.3e+02 Score=31.68 Aligned_cols=110 Identities=7% Similarity=0.026 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCC-CEEEEeeCCCcEEEEecccCccCCccCCCCce-EecCCCceeEEEEecCCCCEEEEeeCC-------
Q 042883 330 NIISSIEFDRDD-ELFASAGVSRRIKIFEFSSVVNEPRDVHYPMV-EMPTRSKLSCLSWNKYTKNLIASSDYD------- 400 (597)
Q Consensus 330 ~~v~~i~~~~~~-~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~~~~~~~l~s~~~d------- 400 (597)
+.|..|+++|.. ..++++...+.|..++ .............. .......|.+|+++|.+.+.++++...
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 489999999963 5566666566554443 22111111110000 000124688999998655555555421
Q ss_pred CcEEEEeCC-CCeeeeEEe-ec--------cceeEEEEeCCCCCceEEeec
Q 042883 401 GIVTIWDVT-TSQSVMEYE-EH--------EKRAWSVDFSCTEPSMLVSGS 441 (597)
Q Consensus 401 g~i~iwd~~-~~~~~~~~~-~~--------~~~v~~~~~~~~~~~~l~s~~ 441 (597)
+...||-.. .|+.-..+. .. ...+..|+++|.++..+..+.
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 124455433 333222221 11 012467999987767766665
No 467
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.84 E-value=6 Score=31.43 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=27.4
Q ss_pred CcccccccccccccccccccccccHHHHHHhhc---------CCC--CCCCCCC
Q 042883 38 DTLCPICKQLMTDAFMTACGHSFCYTCIFTHLR---------NKS--DCPCCGC 80 (597)
Q Consensus 38 ~l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~---------~~~--~CP~Cr~ 80 (597)
+-.|.+|.+-=.-=..=.|--+||..||...+. ... .||.|+.
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 355777765443212225889999999996553 122 3999974
No 468
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.62 E-value=3.3 Score=36.41 Aligned_cols=30 Identities=27% Similarity=0.590 Sum_probs=22.6
Q ss_pred Cccccccccccccc----ccccccccccHHHHHH
Q 042883 38 DTLCPICKQLMTDA----FMTACGHSFCYTCIFT 67 (597)
Q Consensus 38 ~l~C~IC~~~f~~P----~~l~CgH~FC~~Cl~~ 67 (597)
.-.|.+|...|.-= ..-.||+.||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 34899999988722 3456999999999653
No 469
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.31 E-value=26 Score=23.25 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 164 RKQKLEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKL 206 (597)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 206 (597)
+.++.+.+..++.....++.+...+...+..|..+...+...|
T Consensus 18 R~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 18 RNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666665555443
No 470
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=65.35 E-value=1.4e+02 Score=31.45 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=58.6
Q ss_pred ceeEEEEecCCCCEEEEeeCCCcEEEEeCCCCeeeeEEeec-------cceeEEEEeCCCCCceEEeecCCCcccCCCCe
Q 042883 380 KLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEH-------EKRAWSVDFSCTEPSMLVSGSDDCKVGSADHH 452 (597)
Q Consensus 380 ~i~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~ 452 (597)
.|.+|+++|.+.+.++++...|.|..++- .++.-..+..+ ...|.+|+++|.+...++.+.....-....+.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 78999999976677888876677766653 33222222211 24589999998555444433211000000112
Q ss_pred EEEEEccCCCcceeeecc-C--------CCceEEEEecCC--CeEEEeeC
Q 042883 453 IHYYDLRNISQPLHVFNG-H--------KKAVSYVKFLSN--NELASAST 491 (597)
Q Consensus 453 i~i~d~~~~~~~~~~~~~-~--------~~~v~~v~~~~~--~~l~s~~~ 491 (597)
..||-....++.-..+.. . ...+..|+++|. +.++.+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 455555443433322211 1 012467888886 56666653
No 471
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=65.33 E-value=5.1 Score=26.21 Aligned_cols=40 Identities=25% Similarity=0.660 Sum_probs=27.8
Q ss_pred cccccccccccccc---cccccccccHHHHHHhhcCCCCCCCC
Q 042883 39 TLCPICKQLMTDAF---MTACGHSFCYTCIFTHLRNKSDCPCC 78 (597)
Q Consensus 39 l~C~IC~~~f~~P~---~l~CgH~FC~~Cl~~~~~~~~~CP~C 78 (597)
..|--|+..|.++. .-.|++.||..|=.=.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999997653 33499999999953222233449987
No 472
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=64.79 E-value=30 Score=23.51 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 042883 162 CLRKQKLEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKLR 207 (597)
Q Consensus 162 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 207 (597)
..+.+++..+.+++..+..++.....+....+.|..++..+..++.
T Consensus 22 afReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 22 AFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666665555555555555555555555554443
No 473
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=64.50 E-value=0.61 Score=33.15 Aligned_cols=37 Identities=27% Similarity=0.725 Sum_probs=23.2
Q ss_pred Cccccc--cccccc-----ccccc------cccccccHHHHHHhhcCCCCCC
Q 042883 38 DTLCPI--CKQLMT-----DAFMT------ACGHSFCYTCIFTHLRNKSDCP 76 (597)
Q Consensus 38 ~l~C~I--C~~~f~-----~P~~l------~CgH~FC~~Cl~~~~~~~~~CP 76 (597)
-.-||- |.-... .++.- .|||.||..|.+.|= . ..|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH-~-~~C~ 74 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH-E-GECS 74 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC-S-SCSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc-C-Cccc
Confidence 344775 665543 12444 599999999997643 3 4554
No 474
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.22 E-value=44 Score=37.02 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=7.8
Q ss_pred hHHHHHHHHHhHhhHH
Q 042883 249 TAARKQRVRAQLNDLK 264 (597)
Q Consensus 249 ~~~~~~~l~~~~~~l~ 264 (597)
+......|.++++++.
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555555554
No 475
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=64.18 E-value=18 Score=36.46 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=40.6
Q ss_pred ceeEEEEeecCCEEEEEeC------------CCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEE
Q 042883 515 EKNFVGLTVNNEYIACGSE------------TNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTML 582 (597)
Q Consensus 515 ~v~~v~~s~~g~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 582 (597)
....|.|+++|.+.++... .+.|..++..+++....+..+. ...++.++|+||++.|+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~----------~aEpnGiafSPD~ktLf 546 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI----------GCEVTGISFSPDQKTLF 546 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT----------TCEEEEEEECTTSSEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC----------CccccCCEECCCCCEEE
Confidence 4578999999987773321 1256777766676544443211 45789999999999887
Q ss_pred Ee
Q 042883 583 TA 584 (597)
Q Consensus 583 s~ 584 (597)
+.
T Consensus 547 V~ 548 (592)
T 4a9v_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 476
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=64.11 E-value=0.72 Score=33.33 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=20.8
Q ss_pred ccccccccc-----cccccc-ccccccHHHHHHh
Q 042883 41 CPICKQLMT-----DAFMTA-CGHSFCYTCIFTH 68 (597)
Q Consensus 41 C~IC~~~f~-----~P~~l~-CgH~FC~~Cl~~~ 68 (597)
||=|.-.+. .++.-| ||+.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 888877554 235666 9999999998765
No 477
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.15 E-value=86 Score=28.23 Aligned_cols=200 Identities=9% Similarity=0.009 Sum_probs=106.2
Q ss_pred CCCcEEEEEEcCCCCEEEEeeCCCcEEEEecccCccCCccCCCCceEecCCCceeEEEEecC-CCCEEEEeeCCCcEEEE
Q 042883 328 AANIISSIEFDRDDELFASAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKY-TKNLIASSDYDGIVTIW 406 (597)
Q Consensus 328 ~~~~v~~i~~~~~~~~l~t~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~-~~~~l~s~~~dg~i~iw 406 (597)
..+.+..+......++|+.-+.+|.++--.+..-..... .. . ......|.++-. ++ +...++..+.+|.++-.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~--~~--l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~ 95 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK--VS--L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKI 95 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE--CC--C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc--cc--c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEE
Confidence 345666666555566777777788876544322110000 01 1 334566666644 32 45788899999999998
Q ss_pred eCCCC------eeeeEEeeccceeEEEEeCCCCCceEEeecCCCcccCCCCeEEEEEccC---CC-----cceeeeccCC
Q 042883 407 DVTTS------QSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCKVGSADHHIHYYDLRN---IS-----QPLHVFNGHK 472 (597)
Q Consensus 407 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~~~~~d~~i~i~d~~~---~~-----~~~~~~~~~~ 472 (597)
.+..- .....+.. .+.+..+.... +...++..+. .|.++.++... .+ .....+. ..
T Consensus 96 ~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~-~~~~ill~T~-------~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~ 165 (276)
T 3no0_A 96 PLAEFEYKAQGMPIIKLTE-GDEVVSIASSV-DETHILLFTK-------KGRVARFSVREVPPSTPGARGVQGIKLE-KN 165 (276)
T ss_dssp EGGGTTTCSTTEECSCCCT-TCCEEEEEECC-SSCEEEEEET-------TSEEEEEEGGGSCBCCTTCCCEECCCCC-TT
T ss_pred EHHHhhhhcCCeEEEecCC-CCEEEEEEEeC-CCCEEEEEEC-------CCEEEEEEhhhCCCcCCCCCCEEEEccC-CC
Confidence 86442 11222222 23444444443 3333444443 44466666532 11 1111122 23
Q ss_pred CceEEEEecCC-CeEEEeeCCCcEEEEEcCC-------CcceeeeeCCCCceeEEEEeecCCEEEEEeCCCcEEE--EEc
Q 042883 473 KAVSYVKFLSN-NELASASTDSSLRLWDVKE-------NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFV--YHK 542 (597)
Q Consensus 473 ~~v~~v~~~~~-~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i--wd~ 542 (597)
..|.++...++ ..++..+..|.++...+.. ++-+..+ ...+.+-.+....++..++..+.+|.+.. ++.
T Consensus 166 d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 166 DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 45555544444 7888999999999887643 2223333 22334444433333345666778888877 876
Q ss_pred cC
Q 042883 543 AI 544 (597)
Q Consensus 543 ~~ 544 (597)
..
T Consensus 245 ~~ 246 (276)
T 3no0_A 245 KD 246 (276)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 478
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.84 E-value=3.2 Score=29.99 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=24.3
Q ss_pred CCCccccccccccccc----ccccccccccHHHHHH
Q 042883 36 DRDTLCPICKQLMTDA----FMTACGHSFCYTCIFT 67 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P----~~l~CgH~FC~~Cl~~ 67 (597)
++.-.|.+|...|.-- -.-.||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3456799999988743 3456999999999764
No 479
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.54 E-value=2.2 Score=33.74 Aligned_cols=31 Identities=19% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCCccccccccccc--cc---ccccccccccHHHHH
Q 042883 36 DRDTLCPICKQLMT--DA---FMTACGHSFCYTCIF 66 (597)
Q Consensus 36 ~~~l~C~IC~~~f~--~P---~~l~CgH~FC~~Cl~ 66 (597)
..+-+|.+|...|. +. +...|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999983 22 455699999998854
No 480
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.42 E-value=94 Score=28.98 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042883 149 AETNMQILLNFLHCLRK 165 (597)
Q Consensus 149 ~~~~~~~l~~~l~~l~~ 165 (597)
.....+.|++.|..+.+
T Consensus 65 ~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 481
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.25 E-value=16 Score=37.22 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=39.8
Q ss_pred eeEEEEeecCCEEEEEeCC------------CcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE
Q 042883 516 KNFVGLTVNNEYIACGSET------------NEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT 583 (597)
Q Consensus 516 v~~v~~s~~g~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 583 (597)
.-.|+|+|.|.++++-..+ +.+.+.+..+++....+..+. ...++.++|+||++.|+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~----------gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI----------GCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT----------TCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC----------CccCcCeeECCCCCEEEE
Confidence 4569999999966654322 245566666666544443221 678999999999998876
Q ss_pred e
Q 042883 584 A 584 (597)
Q Consensus 584 ~ 584 (597)
.
T Consensus 548 n 548 (592)
T 3zwu_A 548 G 548 (592)
T ss_dssp E
T ss_pred E
Confidence 4
No 482
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=61.95 E-value=5.6 Score=30.86 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=39.8
Q ss_pred ccccccccccc---ccccccccccccHHHHHHhhcCCCCCCCCCCCCccccc
Q 042883 39 TLCPICKQLMT---DAFMTACGHSFCYTCIFTHLRNKSDCPCCGCHLTCKHI 87 (597)
Q Consensus 39 l~C~IC~~~f~---~P~~l~CgH~FC~~Cl~~~~~~~~~CP~Cr~~~~~~~l 87 (597)
+.|..|...+. ......=|..||..|..+.......|-.|.+......+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 78999999996 34556688999999999988766689999998875443
No 483
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=61.04 E-value=13 Score=41.79 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred cCCCceEEEEecCCCeEEEeeCCCcEEE-EEcCCCcceeeeeCCCC----------------------ceeEEEEeecCC
Q 042883 470 GHKKAVSYVKFLSNNELASASTDSSLRL-WDVKENLPLHTFRGHTN----------------------EKNFVGLTVNNE 526 (597)
Q Consensus 470 ~~~~~v~~v~~~~~~~l~s~~~d~~v~i-wd~~~~~~~~~~~~~~~----------------------~v~~v~~s~~g~ 526 (597)
+...+-.-.+.+++..+++-...|-+++ ++-..+..-.....+.+ .+.+++..++..
T Consensus 171 ~~r~Ph~L~avs~~~lvVsL~DGgLLrL~r~~~d~~~~~~~f~~~s~l~sL~~l~~~~~~~~~~~~~~~~vs~~~~~~~~ 250 (1139)
T 4fhn_B 171 LNQKPDLMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLSTYN 250 (1139)
T ss_dssp TTSCEEEEEECCSSEEEEEETTSCEEEEEEETTEEEEEEEC---------------------CCCCTTCBSCCEEETTTT
T ss_pred cCCCceEEEEEcCCcEEEEECCCCEEEEEecCCCCCCceeeecCCcHHhhhhhhcccccCCccCCCcceeEEeeccCCcc
Q ss_pred EEEEEeCCCcEEEEEccCCccccccccCCCCCCCcCcCCCcceEEEEEccCCCeEEE--ecCcccEEEEEecC
Q 042883 527 YIACGSETNEVFVYHKAISKPAASHRFGSDADHVDDDMGSYFISAVCWKSDSPTMLT--ANRKGAIKVLVLAA 597 (597)
Q Consensus 527 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s--~~~dg~v~iwd~~~ 597 (597)
++++-+.|++++||++.++..+.+........... ......+.-.++..+.+. -..+|.+++|.+.+
T Consensus 251 ~lftL~~D~~LRiWsl~t~~~v~t~DL~~~~~~~~----~~~~~~~~~~~~~~l~v~~sp~~~g~F~~~~v~~ 319 (1139)
T 4fhn_B 251 VLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQ----SFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLNA 319 (1139)
T ss_dssp EEEEEBTTCEEEEEETTTTEEEEEEECCCSSSTTS----CCSSCCSEEESSSSEEECCCCGGGCCCCCCCEEE
T ss_pred EEEEEeCCCEEEEEECCCCCeEEeechhhcCCccc----ccceeccCCCCcceEEEEEcCCCCcEEEEEEEcc
No 484
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=60.27 E-value=49 Score=24.42 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 154 QILLNFLHCLRKQK---LEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKL 206 (597)
Q Consensus 154 ~~l~~~l~~l~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 206 (597)
+.++..|+.|+.+. .+++..++..+...+......+..+..+..+.+.+...+
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 233333333333333333344444444444444333333
No 485
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=59.86 E-value=3.8 Score=27.14 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=28.1
Q ss_pred CCCcccccccccccccccc---cccccccHHHHHHhhcCCC----CCCCCCCCC
Q 042883 36 DRDTLCPICKQLMTDAFMT---ACGHSFCYTCIFTHLRNKS----DCPCCGCHL 82 (597)
Q Consensus 36 ~~~l~C~IC~~~f~~P~~l---~CgH~FC~~Cl~~~~~~~~----~CP~Cr~~~ 82 (597)
..+..|.||.+.- .+| .|...|-..|+..-+...+ .||.|+...
T Consensus 7 ~~~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4467799998732 222 3777888888864333322 399997653
No 486
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.63 E-value=7 Score=27.87 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCccccccccccccc----ccccccccccHHHHHH
Q 042883 37 RDTLCPICKQLMTDA----FMTACGHSFCYTCIFT 67 (597)
Q Consensus 37 ~~l~C~IC~~~f~~P----~~l~CgH~FC~~Cl~~ 67 (597)
+...|.+|...|.-- ..-.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 346799999998732 3446999999999754
No 487
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.37 E-value=25 Score=20.74 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042883 183 EDVYAVEKHKIELYRAR 199 (597)
Q Consensus 183 ~~~~~~~~~~~~l~~~~ 199 (597)
....+++..+..|+.+.
T Consensus 17 ~~naeLEervstLq~EN 33 (42)
T 2oqq_A 17 NKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33333333334443333
No 488
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.66 E-value=44 Score=34.77 Aligned_cols=33 Identities=3% Similarity=0.024 Sum_probs=28.3
Q ss_pred eecCCEEEEEeCCCcEEEEEccCCccccccccC
Q 042883 522 TVNNEYIACGSETNEVFVYHKAISKPAASHRFG 554 (597)
Q Consensus 522 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 554 (597)
..+..++++-+.|+++++|++.++..+......
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 345789999999999999999999988777763
No 489
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.49 E-value=4.4 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=18.7
Q ss_pred cccccccccccccccccccccccHHHHHHhhcCCC--CCCCCCCC
Q 042883 39 TLCPICKQLMTDAFMTACGHSFCYTCIFTHLRNKS--DCPCCGCH 81 (597)
Q Consensus 39 l~C~IC~~~f~~P~~l~CgH~FC~~Cl~~~~~~~~--~CP~Cr~~ 81 (597)
..|.+|.-+|....--| ..|-.-.. .||+|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~----------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDN----------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTT----------CCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCC----------cchhhCCCCCcCcCCCCc
Confidence 56888888776322222 12222222 49999864
No 490
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=58.11 E-value=25 Score=29.58 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccccccchhhhhhhHhhh
Q 042883 146 QEEAETNMQILLNFLHCLRKQKLEELNEIQADLRCIEEDVY-AVEKHKIELYRARGRCLAKLRTFDDFTASKKTDEKAQI 224 (597)
Q Consensus 146 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 224 (597)
....++++.++.-.+..++......++.++..+.-+-+++. .+....++|..++.-+...++.............
T Consensus 88 ~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~---- 163 (185)
T 3r2p_A 88 SKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTH---- 163 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hhcccccccCCCCCCCCCCccchhhHHHHHHHHHhHhhHHH
Q 042883 225 SSQGLLMKDACGGPDSPYASQSGLTAARKQRVRAQLNDLKE 265 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 265 (597)
..+-....+.++.+.+++|++
T Consensus 164 --------------------l~Py~ee~k~kl~~~leeLke 184 (185)
T 3r2p_A 164 --------------------LAPYSDELRQRLAARLEALKE 184 (185)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHTTC-
T ss_pred --------------------hhhhHHHHHHHHHHHHHHhhc
No 491
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=56.84 E-value=4.5 Score=28.74 Aligned_cols=30 Identities=33% Similarity=0.762 Sum_probs=23.1
Q ss_pred Cccccccccccccc----ccccccccccHHHHHH
Q 042883 38 DTLCPICKQLMTDA----FMTACGHSFCYTCIFT 67 (597)
Q Consensus 38 ~l~C~IC~~~f~~P----~~l~CgH~FC~~Cl~~ 67 (597)
.-.|.+|...|.-- ..-.||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45799999999732 2345999999999764
No 492
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.51 E-value=5.4 Score=27.55 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=21.2
Q ss_pred cccccccccccc----ccccccccccHHHHH
Q 042883 40 LCPICKQLMTDA----FMTACGHSFCYTCIF 66 (597)
Q Consensus 40 ~C~IC~~~f~~P----~~l~CgH~FC~~Cl~ 66 (597)
.|.+|...|.-- -.-.||..||..|..
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccC
Confidence 799999988732 234599999999964
No 493
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.48 E-value=50 Score=23.37 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042883 152 NMQILLNFLHCLRKQKLEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCL 203 (597)
Q Consensus 152 ~~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 203 (597)
.+..|...+..+..+....+..+...+..++..+...+........+++.++
T Consensus 9 ~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 9 TNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666655555666666666666665555555555444444444
No 494
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=56.46 E-value=47 Score=23.05 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 042883 170 ELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKLRT 208 (597)
Q Consensus 170 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 208 (597)
++..++......+.++++.+.+.++|..+++.+..++++
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444344444444445555555555555555555544
No 495
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=56.41 E-value=36 Score=21.75 Aligned_cols=11 Identities=18% Similarity=0.057 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 042883 187 AVEKHKIELYR 197 (597)
Q Consensus 187 ~~~~~~~~l~~ 197 (597)
++-+-...+..
T Consensus 31 QLmkVN~~ls~ 41 (63)
T 2w6a_A 31 QLMKVNSSLSD 41 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhHhhhH
Confidence 33333333333
No 496
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=56.40 E-value=45 Score=22.79 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 042883 157 LNFLHCLRKQKLEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKLR 207 (597)
Q Consensus 157 ~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 207 (597)
+..|...+..+-.++.++......++.++..+.+....++.+..++..+++
T Consensus 25 KNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 25 KNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555566655555666665555555555555555444443
No 497
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.07 E-value=4 Score=29.61 Aligned_cols=25 Identities=36% Similarity=0.770 Sum_probs=0.0
Q ss_pred cccccccccccc----ccccccccccHHH
Q 042883 40 LCPICKQLMTDA----FMTACGHSFCYTC 64 (597)
Q Consensus 40 ~C~IC~~~f~~P----~~l~CgH~FC~~C 64 (597)
.|.+|...|.-= ..-.||+.||..|
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~v~C~~C 50 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGKVFCGVC 50 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred cCcCCCCcccchhhCccccCCCCEECCcc
No 498
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=54.99 E-value=1.2e+02 Score=27.25 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccccccchhhhhhhHhhh
Q 042883 146 QEEAETNMQILLNFLHCLRKQKLEELNEIQADLRCIEEDVY-AVEKHKIELYRARGRCLAKLRTFDDFTASKKTDEKAQI 224 (597)
Q Consensus 146 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 224 (597)
....+.++.+|.-....++..+...+++++..+.-+-+++. .+.+..++++.++.-...+++.............
T Consensus 43 ~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~---- 118 (273)
T 3s84_A 43 GDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGR---- 118 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----
Q ss_pred hhcccccccCCCCCCCCCCccchhhHHHHHHHHHhHhhHHH
Q 042883 225 SSQGLLMKDACGGPDSPYASQSGLTAARKQRVRAQLNDLKE 265 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 265 (597)
..+-..+.+.++...++++.+
T Consensus 119 --------------------L~Py~eelr~k~~~~leeLr~ 139 (273)
T 3s84_A 119 --------------------LTPYADEFKVKIDQTVEELRR 139 (273)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------hHhHHHHHHHHHHHHHHHHHH
No 499
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.10 E-value=68 Score=32.81 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Q 042883 137 LVAKKRKLEQEEAETNMQILLNFLHCLRKQKLEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKLRTFDDFT 213 (597)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 213 (597)
.........++..+.....++...+.... .+++++.++++..+++..++..++...++.++......++++.....
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADA-KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhh-hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
No 500
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.85 E-value=38 Score=34.78 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchh
Q 042883 146 QEEAETNMQILL----------NFLHCLRKQKLEELNEIQADLRCIEEDVYAVEKHKIELYRARGRCLAKLRTFDDFTAS 215 (597)
Q Consensus 146 ~~~~~~~~~~l~----------~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 215 (597)
+.......+.++ +.+.+..++.+++.+.++...+..+++..+.++..+.++++..++...+++..+....
T Consensus 483 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 483 HAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Q ss_pred hhhhhHhhhhhccccccc
Q 042883 216 KKTDEKAQISSQGLLMKD 233 (597)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~ 233 (597)
...+....-.+.....+.
T Consensus 563 l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 563 LRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Done!