BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042884
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 191/421 (45%), Gaps = 60/421 (14%)
Query: 169 CVANMTSLRILDVSSNQLTGSIAS-SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLK 227
C A++TSL D+S N L+G + + + L + ++ L++S N P + + L+
Sbjct: 98 CSASLTSL---DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDG--------------------AT 267
+ D N ++ + L+ +L++L +S G +T
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 214
Query: 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327
FL L+++D+S K++G+F + + T+LK L + ++ GP +P K L
Sbjct: 215 GIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSL 271
Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG---------------- 371
+ L ++ N F G IP + L ++S N G++P FG
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 372 ---------NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL------ 416
+ LK+LDLS N+ +GE+PE L L L LS+N+ G +L
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 417 --SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
+ L L L N G IPP + N + + +L+LS N L+G IPS+ +L + L L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534
N L G+IP +L+ +KTLE L FN+L+GEIP + N S N +P I
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 535 R 535
R
Sbjct: 512 R 512
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 142/509 (27%), Positives = 229/509 (44%), Gaps = 68/509 (13%)
Query: 46 NLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERA 105
+L ++LSG ++ L S + L N+S + + G V G G SLE L++
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGL--KFLNVSSNTLDFPGKVSG-GL-KLNSLEVLDLSAN 161
Query: 106 RIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS 165
I+ ++ + LK+L++S +S + +D C ++L+ L +N+
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGD----VDVSRC--VNLEFLDVSSNNFSTG 215
Query: 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSR 225
+P+ + + ++L+ LD+S N+L+G S ++ T ++ L++S N F PI PL
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL---KS 270
Query: 226 LKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKF-------------- 271
L+ N+ EI + S L L LS + GA P F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 272 ----------LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RL 319
L L+ +DLS + +GE P L + L TL L +++ +GP L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 320 PIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKIL 379
+ L++L + NN F G IP + + L+S ++S N L G+IPSS G+++ L+ L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
L N L GEIP+ L + L L L N L G IP + N
Sbjct: 448 KLWLNMLEGEIPQELMY-------------------VKTLETLILDFNDLTGEIPSGLSN 488
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
T + ++LS+N LTG IP L+++ L LS N +G IP +L + ++L L N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 500 NLSGEIPEWKAQFATFNESSYEGNTFLCG 528
+G IP A F +S F+ G
Sbjct: 549 LFNGTIPA-----AMFKQSGKIAANFIAG 572
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 186/429 (43%), Gaps = 62/429 (14%)
Query: 160 NDLRGSLPW-CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLE 218
N+ G LP + M L++LD+S N+ +G + S S+ L LS N+F PI L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LP 386
Query: 219 PLFNHSR--LKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQH 276
L + + L+ +NN +I + S + +L L LS Y G T P L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS---ELVSLHLSFNYLSG-TIPSSLGSLS 442
Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 336
L + L + GE P L+ T L+TL L + L G + + L + +SNN
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 337 FQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL-- 394
G IP IG L NL +S N+ G+IP+ G+ L LDL+ N G IP +
Sbjct: 502 LTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 395 AVGCVYLDFLA------LSNNSLEGKV-------------------LSLLSGLDLSCNKL 429
G + +F+A + N+ ++ + LS + +++
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF------------------------SNLK 465
GH P N + L++S+N L+G IP +L+
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 466 HIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTF 525
+ LDLS NKL+G+IP + L L L+ NNLSG IPE QF TF + + N
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG 739
Query: 526 LCGLPLPIC 534
LCG PLP C
Sbjct: 740 LCGYPLPRC 748
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 191/421 (45%), Gaps = 60/421 (14%)
Query: 169 CVANMTSLRILDVSSNQLTGSIAS-SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLK 227
C A++TSL D+S N L+G + + + L + ++ L++S N P + + L+
Sbjct: 95 CSASLTSL---DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDG--------------------AT 267
+ D N ++ + L+ +L++L +S G +T
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 211
Query: 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327
FL L+++D+S K++G+F + + T+LK L + ++ GP +P K L
Sbjct: 212 GIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSL 268
Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG---------------- 371
+ L ++ N F G IP + L ++S N G++P FG
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 372 ---------NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL------ 416
+ LK+LDLS N+ +GE+PE L L L LS+N+ G +L
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 417 --SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 474
+ L L L N G IPP + N + + +L+LS N L+G IPS+ +L + L L
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 475 NKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534
N L G+IP +L+ +KTLE L FN+L+GEIP + N S N +P I
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 535 R 535
R
Sbjct: 509 R 509
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 142/509 (27%), Positives = 229/509 (44%), Gaps = 68/509 (13%)
Query: 46 NLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERA 105
+L ++LSG ++ L S + L N+S + + G V G G SLE L++
Sbjct: 103 DLSRNSLSGPVTTLTSLGSCSGL--KFLNVSSNTLDFPGKVSG-GL-KLNSLEVLDLSAN 158
Query: 106 RIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS 165
I+ ++ + LK+L++S +S + +D C ++L+ L +N+
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGD----VDVSRC--VNLEFLDVSSNNFSTG 212
Query: 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSR 225
+P+ + + ++L+ LD+S N+L+G S ++ T ++ L++S N F PI PL
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL---KS 267
Query: 226 LKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKF-------------- 271
L+ N+ EI + S L L LS + GA P F
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 272 ----------LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RL 319
L L+ +DLS + +GE P L + L TL L +++ +GP L
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 320 PIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKIL 379
+ L++L + NN F G IP + + L+S ++S N L G+IPSS G+++ L+ L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
L N L GEIP+ L + L L L N L G IP + N
Sbjct: 445 KLWLNMLEGEIPQELMY-------------------VKTLETLILDFNDLTGEIPSGLSN 485
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
T + ++LS+N LTG IP L+++ L LS N +G IP +L + ++L L N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 500 NLSGEIPEWKAQFATFNESSYEGNTFLCG 528
+G IP A F +S F+ G
Sbjct: 546 LFNGTIPA-----AMFKQSGKIAANFIAG 569
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 186/429 (43%), Gaps = 62/429 (14%)
Query: 160 NDLRGSLPW-CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLE 218
N+ G LP + M L++LD+S N+ +G + S S+ L LS N+F PI L
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LP 383
Query: 219 PLFNHSR--LKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQH 276
L + + L+ +NN +I + S + +L L LS Y G T P L
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS---ELVSLHLSFNYLSG-TIPSSLGSLS 439
Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 336
L + L + GE P L+ T L+TL L + L G + + L + +SNN
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 337 FQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL-- 394
G IP IG L NL +S N+ G+IP+ G+ L LDL+ N G IP +
Sbjct: 499 LTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 395 AVGCVYLDFLA------LSNNSLEGKV-------------------LSLLSGLDLSCNKL 429
G + +F+A + N+ ++ + LS + +++
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF------------------------SNLK 465
GH P N + L++S+N L+G IP +L+
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 466 HIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTF 525
+ LDLS NKL+G+IP + L L L+ NNLSG IPE QF TF + + N
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG 736
Query: 526 LCGLPLPIC 534
LCG PLP C
Sbjct: 737 LCGYPLPRC 745
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 125/268 (46%), Gaps = 49/268 (18%)
Query: 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327
P + L Y+ ++HT ++G P++L +++KTL
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQIKTLV-------------------- 128
Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNIN-LLKILDLSNNQL 386
LD S N G +P I LPNL+ N + G+IP S+G+ + L + +S N+L
Sbjct: 129 -TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 387 TGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 446
TG+IP A + L F+ LS N LEG S+L G D Q +
Sbjct: 187 TGKIPPTFAN--LNLAFVDLSRNMLEGDA-SVLFGSD-----------------KNTQKI 226
Query: 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
+L+ N+L + K++ LDL N++ G +P L +LK L +++FNNL GEIP
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 507 EWKAQFATFNESSYEGNTFLCGLPLPIC 534
+ F+ S+Y N LCG PLP C
Sbjct: 286 Q-GGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 427 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 486
N L+G IPP I LT++ L ++H N++G IP S +K + +LD SYN L+G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 487 ELKTLEVFSLAFNNLSGEIPEWKAQFA 513
L L + N +SG IP+ F+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 17/244 (6%)
Query: 146 LCSLMHLQELYKVN-NDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
L +L +L LY N+L G +P +A +T L L ++ ++G+I L+ + ++ L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTL 130
Query: 205 HLSDNHFR--IPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGY 262
S N +P S+ L N + FD N ++ I +SY + F + +S
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGI-TFDG--NRISGAIPDSYGSFSKLF--TSMTISRNR 185
Query: 263 GDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRL-PI 321
G P F +L +VDLS + G+ + L ++ + + L +SLA F L +
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKV 240
Query: 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDL 381
K L LD+ NN G +P + L L S N+S N L G IP GN+ +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 382 SNNQ 385
+NN+
Sbjct: 299 ANNK 302
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 433 IPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 491
IP + NL + L + NNL G IP + L + L +++ ++G IP L ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 492 EVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530
++N LSG +P + +++GN +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 441 TRIQTLNLSHNNLTGL-------IPSTFSNLKHIESLDLS-YNKLNGKIPHQLVELKTLE 492
T QT +++ +L+GL IPS+ +NL ++ L + N L G IP + +L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 493 VFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNERDDN 552
+ N+SG IP++ +Q T + N LP I P GN
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 553 LIDMDNFFITFTTSYVI 569
+ D F TS I
Sbjct: 165 IPDSYGSFSKLFTSMTI 181
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 37/202 (18%)
Query: 13 SMGSLPSLNTLYLKHNNFXXXXXXXXQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
++ L L+ LY+ H N ++ L++S ++L +L SI+SL P+L
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY---NALSGTLPPSISSL-PNL 151
Query: 73 KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
++ ++G + K + + R R+ G+ P+ L+L+
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---------GKIPPTFANLNLAFV 202
Query: 133 TLSTN-----------------------SSRILDRGLCSL-MHLQELYKVNNDLRGSLPW 168
LS N +S D G L +L L NN + G+LP
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 169 CVANMTSLRILDVSSNQLTGSI 190
+ + L L+VS N L G I
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEI 284
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 93/233 (39%), Gaps = 46/233 (19%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIG----DILPNLISFNISMNALDGSIPSSFGNINLLKILD 380
K L ++ V + N Q H +I L +++ L G +PS +NLLK L
Sbjct: 246 KGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLV 304
Query: 381 LSNNQ-------------------LTGEIPE-HLAVGCVY----LDFLALSNNSLEGKVL 416
LS N + G + + HL VGC+ L L LS+N +E
Sbjct: 305 LSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS-- 362
Query: 417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
C L Q+ NL+ +QTLNLSHN GL F +E LDL++ +
Sbjct: 363 --------DCCSL------QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 477 LNGKIPHQLVE-LKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCG 528
L+ P + L L+V +L + L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 36/310 (11%)
Query: 151 HLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNH 210
LQEL L+G LP + + L+ L +S N + A+ S+ L++ N
Sbjct: 276 QLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF-DQLCQISAANFPSLTHLYIRGNV 333
Query: 211 FRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNF-QLQYLLLSSGYGDGATFP 269
++ + + L L+ D +N++ E ++ SL N LQ L LS G
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDI--EASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQ 391
Query: 270 KFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQ 329
F LE +DL+ T+++ P +N L+ L L L + + LR
Sbjct: 392 AF-KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRH 450
Query: 330 LDVSNNNFQ-GHIP----LEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
L++ N+FQ G I L+ L LI + + ++D +F ++ + +DLS+N
Sbjct: 451 LNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSID---QQAFHSLGKMSHVDLSHN 507
Query: 385 QLTGEIPEHLA-VGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 443
LT + + L+ + +YL+ A S N + ++L +LS +
Sbjct: 508 SLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILS---------------------QQ 546
Query: 444 QTLNLSHNNL 453
T+NLSHN L
Sbjct: 547 STINLSHNPL 556
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 80 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 136
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG 479
+P FSNL ++E LDLS NK+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 105
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLT 187
+ TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 106 ---VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 188 GSIASSPLAHLTSIEELHLSDNHFRIPIS-LEP-LFNHSRLKIFDAENNELNA 238
SI + L L + L+LS + P++ ++P F RLK + N+L +
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLS 103
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 104 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 160
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 485
+P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 22/214 (10%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
++L LD ++N + + L NLI +IS + F ++ L++L ++ N
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479
Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 444
+ L FL LS LE LS P +L+ +Q
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLE----------QLS--------PTAFNSLSSLQ 521
Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
LN+SHNN L + L ++ LD S N + +L + SLAF NL+
Sbjct: 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS----SLAFLNLTQN 577
Query: 505 IPEWKAQFATFNESSYEGNTFLCGLPLPICRSPA 538
+ +F + + L + C +P+
Sbjct: 578 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 75 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 129
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQL 186
+ TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 130 ---VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 22 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 80
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 81 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 137
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
+P FSNL ++E LDLS NK+
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 106
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLT 187
+ TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 107 ---VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 188 GSIASSPLAHLTSIEELHLSDNHFRIPIS-LEP-LFNHSRLKIFDAENNELNA 238
SI + L L + L+LS + P++ ++P F RLK + N+L +
Sbjct: 164 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 22 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 80
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 81 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 137
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
+P FSNL ++E LDLS NK+
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 106
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLT 187
+ TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 107 ---VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 188 GSIASSPLAHLTSIEELHLSDNHFRIPIS-LEP-LFNHSRLKIFDAENNELNA 238
SI + L L + L+LS + P++ ++P F RLK + N+L +
Sbjct: 164 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLS 79
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 80 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 136
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 485
+P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 22/214 (10%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
++L LD ++N + + L NLI +IS + F ++ L++L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 444
+ L FL LS LE LS P +L+ +Q
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLE----------QLS--------PTAFNSLSSLQ 497
Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
LN+SHNN L + L ++ LD S N + +L + SLAF NL+
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS----SLAFLNLTQN 553
Query: 505 IPEWKAQFATFNESSYEGNTFLCGLPLPICRSPA 538
+ +F + + L + C +P+
Sbjct: 554 DFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 105
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQL 186
+ TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 106 ---VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 23 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 81
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 82 TLILTGNPIQSLALGAFSGLS-SLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLI 138
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
+P FSNL ++E LDLS NK+
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 107
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLT 187
L TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 108 ---VALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 188 GSIASSPLAHLTSIEELHLSDNHFRIPIS-LEP-LFNHSRLKIFDAENNELNA 238
SI + L L + L+LS + P++ ++P F RLK + N+L +
Sbjct: 165 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 23 KIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 81
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 82 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 138
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLN 478
+P FSNL ++E LDLS NK+
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 107
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQLT 187
+ TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 108 ---VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 188 GSIASSPLAHLTSIEELHLSDNHFRIPIS-LEP-LFNHSRLKIFDAENNELNA 238
SI + L L + L+LS + P++ ++P F RLK + N+L +
Sbjct: 165 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 344 EIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402
+I D LP + + ++S N L SF + L++LDLS ++ I + +L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79
Query: 403 FLALSNNSLEGKVLSLLSGLDLSCNKLIG---------HIPPQIGNLTRIQTLNLSHNNL 453
L L+ N ++ L SGL S KL+ + P IG+L ++ LN++HN +
Sbjct: 80 TLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLI 136
Query: 454 TGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 485
+P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLS 128
FP L+ L +S CE+ + G ++SL HL+ P S SL+ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL- 105
Query: 129 LSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG-SLPWCVANMTSLRILDVSSNQL 186
+ TN + + + + L L+EL +N ++ LP +N+T+L LD+SSN++
Sbjct: 106 ---VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 18/159 (11%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
++L LD ++N + + L NLI +IS + F ++ L++L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 444
+ L FL LS LE LS P +L+ +Q
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLE----------QLS--------PTAFNSLSSLQ 497
Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 483
LN++ N L + F L ++ + L N + P
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492
+P ++ N + ++LS+N ++ L +FSN+ + +L LSYN+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 493 VFSLAFNNLSGEIPE 507
+ SL N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 47/135 (34%)
Query: 348 ILPNLISFNISMNALDGS----IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF 403
+LP I +++ LDG+ +P N L ++DLSNN+++
Sbjct: 24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS---------------- 67
Query: 404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463
LSN S N+T++ TL LS+N L + P TF
Sbjct: 68 -TLSNQSFS--------------------------NMTQLLTLILSYNRLRCIPPRTFDG 100
Query: 464 LKHIESLDLSYNKLN 478
LK + L L N ++
Sbjct: 101 LKSLRLLSLHGNDIS 115
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ+ + PLA LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
+LS NH +L L N L++F E LN I +L PN
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 225
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 36/243 (14%)
Query: 303 LKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN-LISFNISMNA 361
L L LVN+ ++ ++L++L +S N+ +EI LP+ L+ I N
Sbjct: 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-----VEIPPNLPSSLVELRIHDNR 134
Query: 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL--- 418
+ F + + +++ N L E A + L++L +S L G L
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194
Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
L+ L L NK+ + +++ L L HN + + + S L + L L NKL+
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 479 GKIPHQLVELKTLEVFSLAFNNLS--------------------------GEIPEWKAQF 512
++P L +LK L+V L NN++ +P W+ Q
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313
Query: 513 ATF 515
ATF
Sbjct: 314 ATF 316
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
+LS NH +L L N L++F E LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
+LS NH +L L N L++F E LN I +L PN
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 224
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
+LS NH +L L N L++F E LN I +L PN
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 225
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
+LS NH +L L N L++F E LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
+LS NH +L L N L++F E LN I +L PN
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 247
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
L L N+ N L F ++ L L L+NNQL +P + LD L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 409 NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
N L+ SL SG+ LT+++ L L+ N L + F L +++
Sbjct: 117 NQLK----SLPSGV--------------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 469 SLDLSYNKLNGKIPH----QLVELKTLEVFSLAFNNLSGEI 505
+L LS N+L +PH +L +L+T+ +F F+ EI
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 149 LMHLQELYKVNNDLRGSLPWCVAN-MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLS 207
L L +LY N L+ SLP V + +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 208 DNHFR 212
N +
Sbjct: 164 TNQLQ 168
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 368 SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL-------LS 420
S+F ++ L LD+S + + + +G L+ L ++ NS + LS L+
Sbjct: 413 SAFLSLEKLLYLDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 471
Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480
LDLS +L L R+Q LN+SHNNL L S ++ L + +LD S+N++
Sbjct: 472 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-- 529
Query: 481 IPHQLVELKTLEVF--SLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPA 538
L+ F SLAF NL+ + F + E FL + C +P
Sbjct: 530 -----TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPV 584
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 347 DILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL 406
DI + + ++S N L SF N + L+ LDLS ++ I + G +L L L
Sbjct: 24 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLIL 82
Query: 407 SNNSLEGKVLSLLSGLDLSCN------KLIGHIPPQIGNLTRIQTLNLSHNNL-TGLIPS 459
+ N ++ SGL N KL IG L ++ LN++HN + + +P+
Sbjct: 83 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 142
Query: 460 TFSNLKHIESLDLSYN 475
FSNL ++ +DLSYN
Sbjct: 143 YFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 368 SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL-------LS 420
S+F ++ L LD+S + + + +G L+ L ++ NS + LS L+
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476
Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480
LDLS +L L R+Q LN+SHNNL L S ++ L + +LD S+N++
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-- 534
Query: 481 IPHQLVELKTLEVF--SLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPA 538
L+ F SLAF NL+ + F + E FL + C +P
Sbjct: 535 -----TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPV 589
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 347 DILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL 406
DI + + ++S N L SF N + L+ LDLS ++ I + G +L L L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLIL 87
Query: 407 SNNSLEGKVLSLLSGLDLSCN------KLIGHIPPQIGNLTRIQTLNLSHNNL-TGLIPS 459
+ N ++ SGL N KL IG L ++ LN++HN + + +P+
Sbjct: 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147
Query: 460 TFSNLKHIESLDLSYN 475
FSNL ++ +DLSYN
Sbjct: 148 YFSNLTNLVHVDLSYN 163
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 111/267 (41%), Gaps = 30/267 (11%)
Query: 97 LEHLNMERARI-APNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLC-SLMHLQE 154
LE L +E R+ A + L + +T +LK L++S+ + +R+L +GL S L+
Sbjct: 140 LEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLET 199
Query: 155 LYKVNNDLRGS----LPWCVANMTSLRILDVSSNQL-TGSIAS------SPLAHLTS--I 201
L N L + L VA+ SLR LD+ SN L IA SP + L + +
Sbjct: 200 LRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWL 259
Query: 202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITE--SYSLTTPNFQLQYLLLS 259
E ++ + R + L LK N+L E SL P QL+ L +
Sbjct: 260 WECDITASGCRDLCRV--LQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVK 317
Query: 260 SGYGDGATFPK---FLYHQHDLEYVDLSHTKMNG----EFPNWLLENNTKLKTLFL---- 308
S A L L + LS K+ E L + T L+ L L
Sbjct: 318 SCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCE 377
Query: 309 VNDSLAGPFRLPIHSHKRLRQLDVSNN 335
V +S + +++ LR+LD+SNN
Sbjct: 378 VTNSGCSSLASLLLANRSLRELDLSNN 404
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 24/155 (15%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
L L N+ N L F ++ L L L+NNQL +P + LD L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 409 NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
N L+ SL SG+ LT+++ L L+ N L + F L +++
Sbjct: 117 NQLK----SLPSGV--------------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 469 SLDLSYNKLNGKIPH----QLVELKTLEVFSLAFN 499
+L LS N+L +PH +L +L+T+ +F F+
Sbjct: 159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 149 LMHLQELYKVNNDLRGSLPWCVAN-MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLS 207
L L +LY N L+ SLP V + +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 208 DNHFR 212
N +
Sbjct: 164 TNQLQ 168
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLACLTKLQNL 178
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250
+LS NH +L L N L++F E LN I +L PN
Sbjct: 179 YLSKNHISDLRALCGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 222
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILD--LSNNQLTGEIPEHLAVGCVYLDFLAL 406
L NL N S N L P NL K++D ++NNQ+ P L L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITP---LANLTNLTGLTL 114
Query: 407 SNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462
NN + K L+ L+ L+LS N I I G LT +Q LN S N +T L P +
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LA 170
Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
NL +E LD+S NK++ L +L LE N +S P
Sbjct: 171 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
L L LQ+L +N + P +AN+T+L LD+SSN+++ S LA LT++E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESL 200
Query: 205 HLSDNHF 211
++N
Sbjct: 201 IATNNQI 207
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 152/355 (42%), Gaps = 61/355 (17%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
G+ L +L ++ NN L P + N+T L + +++NQ+ +PLA+LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 112
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGD 264
L +N ++PL N + L + +N + ++I+ LT+ LQ L SS
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLNFSSNQ-- 162
Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
T K L + LE +D+S K++ +L T L++L N+ ++ L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
L +L ++ N + +IG + L NL +++ N + P + L L L
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPP--- 435
NQ++ P G L L L+ N LE L L+ L L N I I P
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSS 325
Query: 436 ------------------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
+ NLT I L+ HN ++ L P +NL I L L
Sbjct: 326 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 33/200 (16%)
Query: 41 LHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100
L N TNL LS ++ IS + +++ L SL+ L+ S +V + + + +LE L
Sbjct: 125 LKNLTNLNRLELSSNT--ISDISALSGL-TSLQQLNFSSNQVTDL---KPLANLTTLERL 178
Query: 101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNS--SRILDRGLCSLMHLQELYKV 158
++ ++ S + ++ + T +L+ L ++TN+ S I G+ L +L EL
Sbjct: 179 DISSNKV----SDISVLAKLT-NLESL------IATNNQISDITPLGI--LTNLDELSLN 225
Query: 159 NNDLR--GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS 216
N L+ G+L A++T+L LD+++NQ++ +PL+ LT + EL L N +
Sbjct: 226 GNQLKDIGTL----ASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS---N 275
Query: 217 LEPLFNHSRLKIFDAENNEL 236
+ PL + L + N+L
Sbjct: 276 ISPLAGLTALTNLELNENQL 295
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
+ SL LQ L+ NN + S +AN+T++ L NQ++ +PLA+LT I +L
Sbjct: 323 VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLG 377
Query: 206 LSDNHF 211
L+D +
Sbjct: 378 LNDQAW 383
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSS-FGNINLLKILDL 381
K LR L N ++ + LE P L +++ L P S F N++LL++L+L
Sbjct: 372 KNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 382 SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 441
S+ L +HL G L L L NS + +S + L + +G+L
Sbjct: 432 SHCLLDTS-NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQM------------VGSL- 477
Query: 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNL 501
+ L LS NL + F L+++ LDLS+N L G L LK L ++A NN+
Sbjct: 478 --EILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNI 534
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVF 494
Q+ NL +Q LNLS+N GL F +E LD+++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 495 SLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCG 528
+L+ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 48/328 (14%)
Query: 152 LQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
+QEL L G LP + M SL+ L +++N + A S+ +L++ N
Sbjct: 279 VQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF-DQLCQINAASFPSLRDLYIKGNMR 336
Query: 212 RIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ-LQYLLLSSGYGDGATFPK 270
++ + L L+ D ++++ E ++ +L N + LQYL LS G
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDI--EASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQA 394
Query: 271 FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQL 330
F LE +D++ T ++ + P+ +N L+ L L + L + + + LR L
Sbjct: 395 F-KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 331 DVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEI 390
++ N+FQ DGSI + NLL Q+ G +
Sbjct: 454 NLQGNSFQ------------------------DGSISKT----NLL--------QMVGSL 477
Query: 391 PEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 450
+ C + L++ + G L ++ LDLS N L G + +L + LN++
Sbjct: 478 EILILSSC---NLLSIDQQAFHG--LRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMAS 531
Query: 451 NNLTGLIPSTFSNLKHIESLDLSYNKLN 478
NN+ + P L ++LS+N L+
Sbjct: 532 NNIRIIPPHLLPALSQQSIINLSHNPLD 559
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 19/155 (12%)
Query: 365 SIPS-SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL----- 418
S+PS +F + L++L L++N+L +P + L+ L +++N L+ + +
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109
Query: 419 -LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
L+ L L N+L +PP++ +LT++ L+L +N L L F L ++ L L N+
Sbjct: 110 NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 477 LNGKIPH----QLVELKTLEVFSLAFNNLSGEIPE 507
L ++P +L ELKTL++ NN +PE
Sbjct: 169 LK-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 57 LHISLLQSI-ASLFPSLKNLSMSYCEVNGVVRGQGFP-----HFKSLEHLNMERARIAPN 110
L+ + LQ++ A +F LKNL + N + Q P +L L ++R ++
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKL---QALPIGVFDQLVNLAELRLDRNQLK-- 122
Query: 111 TSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV 170
S + +S L YLSL L + + D+ L L+EL NN L+
Sbjct: 123 -SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK----LTSLKELRLYNNQLKRVPEGAF 177
Query: 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHF 211
+T L+ L + +NQL + L ++ L L +N +
Sbjct: 178 DKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481
LDL NKL LT+++ L L+ N L L F LK++E+L ++ NKL +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 482 P----HQLVELKTLEV 493
P QLV L L +
Sbjct: 101 PIGVFDQLVNLAELRL 116
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 111/270 (41%), Gaps = 33/270 (12%)
Query: 97 LEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLC-SLMHLQEL 155
LE+ N+ P S L++ + K L LS+ L RIL +GL S L+ L
Sbjct: 145 LEYCNLTATSCEPLASVLRVKAD----FKELVLSNNDLHEPGVRILCQGLKDSACQLESL 200
Query: 156 YKVNNDLRGS----LPWCVANMTSLRILDVSSNQL--TGSIASSPLAHLTSIEELHLSDN 209
N + + L VA+ SL+ LD+SSN+L G A P L S + L
Sbjct: 201 KLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLW-- 258
Query: 210 HFRIPISLEPLFNHSR-------LKIFDAENNELNAEITE--SYSLTTPNFQLQYLLLSS 260
+ I+ E + R LK +NEL E SL P QL+ L + +
Sbjct: 259 LWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKT 318
Query: 261 GYGDGATFPKF---LYHQHDLEYVDLSHTKMNG----EFPNWLLENNTKLKTLFL----V 309
A+ P F L L + +S + E L + +T L+ L+L V
Sbjct: 319 CSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPDTVLRELWLGDCDV 378
Query: 310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQG 339
+S + +++ LR+LD+SNN G
Sbjct: 379 TNSGCSSLANVLLANRSLRELDLSNNCMGG 408
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAE 232
+LS NH +L L N L++F E
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAE 232
+LS NH +L L N L++F E
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAE 232
+LS NH +L L N L++F E
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
GL L L+ LY NN + ++ +T L L + NQ++ + PLA LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAE 232
+LS NH +L L N L++F E
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELFSQE 206
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500
T I LNL+HN L L + F+ + SLD+ +N ++ P +L L+V +L N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 501 LS 502
LS
Sbjct: 85 LS 86
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLI 430
++ D S+ +LT ++P+ L L+ L++N L S L+ LD+ N +
Sbjct: 7 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 490
P L ++ LNL HN L+ L TF+ ++ L L N + + V+ K
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 491 LEVFSLAFNNLSG 503
L L+ N LS
Sbjct: 123 LITLDLSHNGLSS 135
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
L L+ +++ +D S PS F + L ILDLSNN + + L G L+ L L +
Sbjct: 456 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 513
Query: 409 NSLEG--------------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNL 453
N+L K LS L L+L N IP ++ +L ++ ++L NNL
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL 572
Query: 454 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
L S F+N ++SL+L N + VE K VF AF NL+
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITS------VEKK---VFGPAFRNLT 612
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500
T I LNL+HN L L + F+ + SLD+ +N ++ P +L L+V +L N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 501 LS 502
LS
Sbjct: 95 LS 96
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLI 430
++ D S+ +LT ++P+ L L+ L++N L S L+ LD+ N +
Sbjct: 17 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 72
Query: 431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 490
P L ++ LNL HN L+ L TF+ ++ L L N + + V+ K
Sbjct: 73 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 132
Query: 491 LEVFSLAFNNLSG 503
L L+ N LS
Sbjct: 133 LITLDLSHNGLSS 145
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
L L+ +++ +D S PS F + L ILDLSNN + + L G L+ L L +
Sbjct: 466 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 523
Query: 409 NSLEG--------------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNL 453
N+L K LS L L+L N IP ++ +L ++ ++L NNL
Sbjct: 524 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL 582
Query: 454 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
L S F+N ++SL+L N + VE K VF AF NL+
Sbjct: 583 NTLPASVFNNQVSLKSLNLQKNLITS------VEKK---VFGPAFRNLT 622
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500
T I LNL+HN L L + F+ + SLD+ +N ++ P +L L+V +L N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 501 LS 502
LS
Sbjct: 90 LS 91
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLI 430
++ D S+ +LT ++P+ L L+ L++N L S L+ LD+ N +
Sbjct: 12 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 67
Query: 431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 490
P L ++ LNL HN L+ L TF+ ++ L L N + + V+ K
Sbjct: 68 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 127
Query: 491 LEVFSLAFNNLSG 503
L L+ N LS
Sbjct: 128 LITLDLSHNGLSS 140
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408
L L+ +++ +D S PS F + L ILDLSNN + + L G L+ L L +
Sbjct: 461 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 518
Query: 409 NSLEG--------------KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNL 453
N+L K LS L L+L N IP ++ +L ++ ++L NNL
Sbjct: 519 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNL 577
Query: 454 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
L S F+N ++SL+L N + VE K VF AF NL+
Sbjct: 578 NTLPASVFNNQVSLKSLNLQKNLITS------VEKK---VFGPAFRNLT 617
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 29/215 (13%)
Query: 301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN 360
T L L L+++S+ P + K L +LD+S+N L G L NL ++ N
Sbjct: 97 TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS-TKLGTGVQLENLQELLLAKN 155
Query: 361 ---ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLS 417
AL GN +L K LDLS+N L + + GC F + GK+ +
Sbjct: 156 KILALRSEELEFLGNSSLRK-LDLSSNPL-----KEFSPGC----FQTI------GKLFA 199
Query: 418 LLSGLDLSCNKLIGHIPPQIG---NLTRIQTLNLSHNNLTGLIPSTFSNLK--HIESLDL 472
LL L+ +L H+ ++ + T IQ L+L++N L STFS LK ++ LDL
Sbjct: 200 LL----LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDL 255
Query: 473 SYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
SYN L+ L +L SL +NN+ P
Sbjct: 256 SYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 426 CNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 484
C+ L + HIP + + I LNL+HN L L P+ F+ + LD +N ++ P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 485 LVELKTLEVFSLAFNNLS 502
L L+V +L N LS
Sbjct: 69 CQILPLLKVLNLQHNELS 86
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 35/205 (17%)
Query: 13 SMGSLPSLNTLYLKHNNFXXXXXXXXQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSL 72
S LPSL L L++NN + + +NL Y +L + S+ S+AS P++
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSP---RSFYGLSNLRYLSLKRAFTKQSV--SLAS-HPNI 320
Query: 73 KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF 132
+ S F K LE+LNM+ I P+T G SLKYLSLS
Sbjct: 321 DDFS--------------FQWLKYLEYLNMDDNNI-PSTKSNTFTG--LVSLKYLSLSKT 363
Query: 133 TLSTNSSRILDRGLCSLMH--LQELYKVNNDL----RGSLPWCVANMTSLRILDVSSNQL 186
S + + + SL H L L N + G+ W + LRILD+ N++
Sbjct: 364 FTSLQT--LTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEI 417
Query: 187 TGSIASSPLAHLTSIEELHLSDNHF 211
++ L +I E++LS N +
Sbjct: 418 EQKLSGQEWRGLRNIFEIYLSYNKY 442
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 340 HIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV 399
HIP D+ N+ N++ N L P++F + L ILD N ++ PE C
Sbjct: 18 HIP---DDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL----C- 69
Query: 400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 459
++L LL L+L N+L T + L+L N++ + +
Sbjct: 70 --------------QILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSN 115
Query: 460 TFSNLKHIESLDLSYNKL 477
F N K++ LDLS+N L
Sbjct: 116 PFKNQKNLIKLDLSHNGL 133
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 31/210 (14%)
Query: 300 NTKLKTLFLVNDSLAGPFRLPIHSHK--RLRQLDVSNNNFQGHIPLEIGD----ILPNLI 353
NT ++ L L N+ L K L QLD+S NN ++G+ LP+L
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH-----DVGNGSFSYLPSLR 275
Query: 354 SFNISMNALDGSIPSSFGNINLLKILDLSN--NQLTGEIPEHLAVG------CVYLDFLA 405
++ N + P SF ++ L+ L L + + + H + YL++L
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLN 335
Query: 406 LSNNSLEGKVLSLLSGLD----LSCNKLIGHIPPQIGNLTRIQ-------TLNLSHNNLT 454
+ +N++ + +GL LS +K + + N T + TLNL+ N+++
Sbjct: 336 MDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQ-TLTNETFVSLAHSPLLTLNLTKNHIS 394
Query: 455 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 484
+ TFS L + LDL N++ K+ Q
Sbjct: 395 KIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497
G L + L L N LTG+ P+ F HI+ L L NK+ + L L+ +L
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 498 FNNLSGEIP 506
N +S +P
Sbjct: 111 DNQISCVMP 119
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 19/109 (17%)
Query: 370 FGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL 429
FG + L L+L NQLTG P G ++ L L N ++ ++S
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIK----------EISNKMF 98
Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
+G L +++TLNL N ++ ++P +F +L + SL+L+ N N
Sbjct: 99 LG--------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG---KIPHQLVELKTLEVF 494
LT + LNL+HN L L F L ++ LDLSYN+L + +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILD--LSNNQLTGEIPEHLAVGCVYLDFLAL 406
L NL N S N L P NL K++D ++NNQ+ P L L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITP---LANLTNLTGLTL 114
Query: 407 SNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462
NN + K L+ L+ L+LS N I I G LT +Q L+ S N +T L P +
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LA 170
Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
NL +E LD+S NK++ L +L LE N +S P
Sbjct: 171 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
L L LQ+L +N + P +AN+T+L LD+SSN+++ S LA LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESL 200
Query: 205 HLSDNHF 211
++N
Sbjct: 201 IATNNQI 207
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 33/200 (16%)
Query: 41 LHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100
L N TNL LS ++ IS + +++ L SL+ LS S +V + + + +LE L
Sbjct: 125 LKNLTNLNRLELSSNT--ISDISALSGL-TSLQQLSFSSNQVTDL---KPLANLTTLERL 178
Query: 101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNS--SRILDRGLCSLMHLQELYKV 158
++ ++ S + ++ + T +L+ L ++TN+ S I G+ L +L EL
Sbjct: 179 DISSNKV----SDISVLAKLT-NLESL------IATNNQISDITPLGI--LTNLDELSLN 225
Query: 159 NNDLR--GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS 216
N L+ G+L A++T+L LD+++NQ++ +PL+ LT + EL L N +
Sbjct: 226 GNQLKDIGTL----ASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS---N 275
Query: 217 LEPLFNHSRLKIFDAENNEL 236
+ PL + L + N+L
Sbjct: 276 ISPLAGLTALTNLELNENQL 295
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 152/355 (42%), Gaps = 61/355 (17%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
G+ L +L ++ NN L P + N+T L + +++NQ+ +PLA+LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 112
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGD 264
L +N ++PL N + L + +N + ++I+ LT+ LQ L SS
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSSNQ-- 162
Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
T K L + LE +D+S K++ +L T L++L N+ ++ L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
L +L ++ N + +IG + L NL +++ N + P + L L L
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPP--- 435
NQ++ P G L L L+ N LE L L+ L L N I I P
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSS 325
Query: 436 ------------------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
+ NLT I L+ HN ++ L P +NL I L L
Sbjct: 326 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
+ SL LQ L+ NN + S +AN+T++ L NQ++ +PLA+LT I +L
Sbjct: 323 VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLG 377
Query: 206 LSDNHF 211
L+D +
Sbjct: 378 LNDQAW 383
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500
+ ++ L+LSH + L F LK ++ L+L+YNK+N L L+V +L++ N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 501 LSGEI 505
L GE+
Sbjct: 325 LLGEL 329
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
L+ +Q L L+HN L L P FS+L + L L+ N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 500 NLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531
L P+ F + + N F+C L
Sbjct: 537 QLLAPNPD---VFVSLSVLDITHNKFICECEL 565
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%)
Query: 404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463
S NS + L L L+L+ NK+ L +Q LNLS+N L L S F
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
Query: 464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
L + +DL N + L+ L+ L N L+
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 408 NNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 467
N + +G S + DLS +K+ + + T ++ L L+ N + + + F L H+
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 468 ESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAFNNLSG 503
L+LS N L G I ++ E L LEV L++N++
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499
LT + LNLS N L + F NL +E LDLSYN + + L L+ +L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 500 NLSGEIPE 507
L +P+
Sbjct: 382 QLK-SVPD 388
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 26/126 (20%)
Query: 369 SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK 428
+F ++ L IL L NQ ++ G L+ L L+ +L+G VLS
Sbjct: 74 TFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLS----------- 121
Query: 429 LIGHIPPQIGN----LTRIQTLNLSHNNLTGLIPSTFS-NLKHIESLDLSYNKLNGKIPH 483
GN LT ++ L L NN+ + P++F N++ LDL++NK+
Sbjct: 122 ---------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
Query: 484 QLVELK 489
L+ +
Sbjct: 173 DLLNFQ 178
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILD--LSNNQLTGEIPEHLAVGCVYLDFLAL 406
L NL N S N L P NL K++D ++NNQ+ P L L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITP---LANLTNLTGLTL 114
Query: 407 SNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462
NN + K L+ L+ L+LS N I I G LT +Q L+ S N +T L P +
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LA 170
Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
NL +E LD+S NK++ L +L LE N +S P
Sbjct: 171 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
L L LQ+L +N + P +AN+T+L LD+SSN+++ S LA LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESL 200
Query: 205 HLSDNHF 211
++N
Sbjct: 201 IATNNQI 207
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 33/200 (16%)
Query: 41 LHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100
L N TNL LS ++ IS + +++ L SL+ LS S +V + + + +LE L
Sbjct: 125 LKNLTNLNRLELSSNT--ISDISALSGL-TSLQQLSFSSNQVTDL---KPLANLTTLERL 178
Query: 101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNS--SRILDRGLCSLMHLQELYKV 158
++ ++ S + ++ + T +L+ L ++TN+ S I G+ L +L EL
Sbjct: 179 DISSNKV----SDISVLAKLT-NLESL------IATNNQISDITPLGI--LTNLDELSLN 225
Query: 159 NNDLR--GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS 216
N L+ G+L A++T+L LD+++NQ++ +PL+ LT + EL L N +
Sbjct: 226 GNQLKDIGTL----ASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS---N 275
Query: 217 LEPLFNHSRLKIFDAENNEL 236
+ PL + L + N+L
Sbjct: 276 ISPLAGLTALTNLELNENQL 295
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 152/355 (42%), Gaps = 61/355 (17%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
G+ L +L ++ NN L P + N+T L + +++NQ+ +PLA+LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 112
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGD 264
L +N ++PL N + L + +N + ++I+ LT+ LQ L SS
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSSNQ-- 162
Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
T K L + LE +D+S K++ +L T L++L N+ ++ L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
L +L ++ N + +IG + L NL +++ N + P + L L L
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPP--- 435
NQ++ P G L L L+ N LE L L+ L L N I I P
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSS 325
Query: 436 ------------------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
+ NLT I L+ HN ++ L P +NL I L L
Sbjct: 326 LTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
+ SL LQ L+ NN + S +AN+T++ L NQ++ +PLA+LT I +L
Sbjct: 323 VSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLG 377
Query: 206 LSDNHF 211
L+D +
Sbjct: 378 LNDQAW 383
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 372 NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLL----SGLDLSCN 427
N++ L+ LD+S N L + + L LS+N L G V L LDL N
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Query: 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 482
+++ IP + +L +Q LN++ N L + F L ++ + L N + P
Sbjct: 461 RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 110 NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG--SLP 167
+T F+ ++ +PS + +FT + + + +G +L LQ L N L+ +
Sbjct: 340 DTPFIHMVCPPSPS--SFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVA 396
Query: 168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPI--SLEPLFNHSR 225
NM+SL LDVS N L A SI L+LS N + L P +
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-----K 451
Query: 226 LKIFDAENNEL 236
+K+ D NN +
Sbjct: 452 VKVLDLHNNRI 462
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 421 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480
L LS N + P I L+ ++ L LSHN + L F + +E LD+S+N+L
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 481 IPHQLVELKTLEVFSLAFNN 500
+ L+ L+ L+FN+
Sbjct: 116 SCCPMASLRHLD---LSFND 132
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 22/162 (13%)
Query: 341 IPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNNQLTGEIPEHLAVGCV 399
+P + + L L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 459
L +L L +L+ D+ P + L R++ L LS N L + P
Sbjct: 157 NLRYLNLGMCNLK----------DI----------PNLTALVRLEELELSGNRLDLIRPG 196
Query: 460 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNL 501
+F L + L L + ++ + +LK+LE +L+ NNL
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN---KLNGKIPHQLV 486
+ +P I TR LNL N++ + TF +L+H+E L LS N K+ + L
Sbjct: 26 LAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 487 ELKTLEVF 494
L TLE+F
Sbjct: 84 SLNTLELF 91
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 22/178 (12%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN 384
++L LD ++N + + L NLI +IS + F ++ L++L ++ N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160
Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 444
+ L FL LS LE LS P +L+ +Q
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE----------QLS--------PTAFNSLSSLQ 202
Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502
LN+SHNN L + L ++ LD S N + +L + SLAF NL+
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS----SLAFLNLT 256
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 65 IASLFPSLKNLS-MSYCEVNG--VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
I L P LKNL+ ++ E++G + +S++ L++ +I T + G S
Sbjct: 81 ITDLTP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI---TDVTPLAGLSN 136
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
+ YL L+ T N S L L +LQ L NN + P +AN++ L L
Sbjct: 137 LQVLYLDLNQIT---NISP-----LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRA 186
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229
N+++ SPLA L ++ E+HL DN + PL N S L I
Sbjct: 187 DDNKISDI---SPLASLPNLIEVHLKDNQIS---DVSPLANLSNLFIV 228
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 360 NALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL-------E 412
N L+G +P+ FG+ L L+L+ NQ+T EIP + ++ L+ ++N L +
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397
Query: 413 GKVLSLLSGLDLSCNKLIGHIP--------PQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 464
K +S+ S +D S N+ IG + P + ++NLS+N ++ FS
Sbjct: 398 AKSVSVXSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 465 KHIESLDLSYNKLNGKIPH 483
+ S++L N L +IP
Sbjct: 457 SPLSSINLXGNXLT-EIPK 474
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSC--NKLIGHIPPQIGNLTR 442
Q + P + +Y+ + L +E + L C N+L G +P G+ +
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIK 354
Query: 443 IQTLNLSHNNLTGLIPSTFSNL-KHIESLDLSYNKLNGKIPHQLVELKTLEVFS 495
+ +LNL++N +T IP+ F + +E+L ++NKL IP+ + + K++ V S
Sbjct: 355 LASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVXS 405
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 22/162 (13%)
Query: 341 IPLEIGDILPNLISFNISMNALDGSIPS-SFGNINLLKILDLSNNQLTGEIPEHLAVGCV 399
+P + + L L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 459
L +L L +L+ D+ P + L R++ L LS N L + P
Sbjct: 157 NLRYLNLGMCNLK----------DI----------PNLTALVRLEELELSGNRLDLIRPG 196
Query: 460 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNL 501
+F L + L L + ++ + +LK+LE +L+ NNL
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN---KLNGKIPHQ 484
+ + +P I TR LNL N++ + TF +L+H+E L LS N K+ +
Sbjct: 24 RELAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 485 LVELKTLEVF 494
L L TLE+F
Sbjct: 82 LPSLNTLELF 91
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 52/203 (25%)
Query: 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--- 413
+ NA+ P F N+ LL +L L N L+ +P + L L++SNN+LE
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIED 158
Query: 414 ---KVLSLLSGLDLSCNKLIG----------------------HIPPQIGNL-------- 440
+ + L L LS N+L IP + L
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218
Query: 441 -------TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 493
+ L L HNNLT + N + +DLSYN+L + H V+++ LE
Sbjct: 219 VVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276
Query: 494 FSLAFN-----NLSGE-IPEWKA 510
++ N NL G+ IP K
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKV 299
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 100/249 (40%), Gaps = 72/249 (28%)
Query: 292 FPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN--------FQG---- 339
P + +N L L L + L+ R H+ +L L +SNNN FQ
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 340 -----------HIPLEIGDILPNLISFNISMNALDG-SIP-------SSFGNINLLK--- 377
H+ L ++P+L N+S N L +IP +S +IN+++
Sbjct: 168 QNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224
Query: 378 -----ILDLSNNQLTG---------------------EIPEHLAVGCVYLDFLALSNN-- 409
IL L +N LT +I H V L+ L +SNN
Sbjct: 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 410 ---SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 466
+L G+ + L LDLS N L+ H+ R++ L L HN++ L ST LK
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK- 342
Query: 467 IESLDLSYN 475
+L LS+N
Sbjct: 343 --NLTLSHN 349
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 16/198 (8%)
Query: 18 PSLNTLYLKHNNFXXXXXXXXQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSM 77
P L TL + +NN Q + NL+ S S H+ L SL PSL + ++
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS--SNRLTHVDL-----SLIPSLFHANV 193
Query: 78 SYCEVNGVVRGQGFPHFK-SLEHLNMERARIAPNTSFLQI----IGESTPSLKYLSLSDF 132
SY ++ + S +N+ R + + L++ + ++ L Y L +
Sbjct: 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 253
Query: 133 TLSTNS-SRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIA 191
LS N +I+ + L+ LY NN L +L + +L++LD+S N L
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVER 312
Query: 192 SSPLAHLTSIEELHLSDN 209
+ P +E L+L N
Sbjct: 313 NQP--QFDRLENLYLDHN 328
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 337 FQGHIPLEIGDIL----------PNLISF-NISMNALDGSIPSSFGNINLLKILDLSNNQ 385
+ HI ++ D+ +++F N +M L ++ SF + LL + DL +
Sbjct: 24 YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83
Query: 386 L-TGEIPEHLAVGCVYLDFLALSNNSLEGKVLS---LLSGLDLSCNKLIGHIPPQI-GNL 440
+ T + +Y+ F A+ L V LL+ L L N L +P I N
Sbjct: 84 IDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNT 140
Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
++ TL++S+NNL + TF +++L LS N+L
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL 496
I +L++++ L +SHN + L S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 497 AFNNL 501
AF+ L
Sbjct: 101 AFDAL 105
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 8/160 (5%)
Query: 330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALD--GSIPSSFGNINLLKILDLSNNQLT 387
LD SNN + G L L + + MN L I + L+ LD+S N ++
Sbjct: 329 LDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 388 GEIPEHLAVGCVYLDFLALSNNSLEGKVLSLL----SGLDLSCNKLIGHIPPQIGNLTRI 443
+ + L L +S+N L + L LDL NK I IP Q+ L +
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEAL 446
Query: 444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 483
Q LN++ N L + F L ++ + L N + P
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 315 GPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI------------LPNLISFNISMNAL 362
R+ I SH R++ LD+S F+ + LE D+ NL ++S NA
Sbjct: 45 SKLRILIISHNRIQYLDIS--VFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF 102
Query: 363 DG-SIPSSFGNINLLKILDLSNNQL 386
D I FGN++ LK L LS L
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHL 127
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 64 SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
S+A+L P L L++ CE+ + P +L+ L+ + + P ++G++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLD-LSHNQLQSLP------LLGQTL 99
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
P+L L +S L++ L RGL LQELY N+L+ P + L L +
Sbjct: 100 PALTVLDVSFNRLTSLPLGAL-RGL---GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
++NQLT + + L L +++ L L +N + IP
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N+L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNL 501
N+L
Sbjct: 182 NSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 64 SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
S+A+L P L L++ CE+ + P +L+ L+ + + P ++G++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLD-LSHNQLQSLP------LLGQTL 99
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
P+L L +S L++ L RGL LQELY N+L+ P + L L +
Sbjct: 100 PALTVLDVSFNRLTSLPLGAL-RGL---GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
++NQLT + + L L +++ L L +N + IP
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N+L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNL 501
N+L
Sbjct: 182 NSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 64 SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
S+A+L P L L++ CE+ + P +L+ L+ + + P ++G++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLD-LSHNQLQSLP------LLGQTL 99
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
P+L L +S L++ L RGL LQELY N+L+ P + L L +
Sbjct: 100 PALTVLDVSFNRLTSLPLGAL-RGL---GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
++NQLT + + L L +++ L L +N + IP
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N+L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNLSGEIPEWKAQFATFNESSYEGNTFLC 527
N+L IP+ + GN +LC
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 64 SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
S+A+L P L L++ CE+ + P +L+ L+ + + P ++G++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLD-LSHNQLQSLP------LLGQTL 99
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
P+L L +S L++ L RGL LQELY N+L+ P + L L +
Sbjct: 100 PALTVLDVSFNRLTSLPLGAL-RGL---GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
++NQLT + + L L +++ L L +N + IP
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N+L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNLSGEIPEWKAQFATFNESSYEGNTFLC 527
N+L IP+ + GN +LC
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 22/198 (11%)
Query: 319 LPIHSHKRLRQLDV---SNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNI 373
+ ++S K LR L++ S N+ + +EIG L NL + + N L +F +
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135
Query: 374 NLLKILDLSNNQLTG-------EIPEHLAVGCVYLDFLA-LSNNSLEGKVLSLLSGLDLS 425
+ LK L L NN + IP + L L+ +S + EG LS L L+L+
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--LSNLRYLNLA 193
Query: 426 -CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 484
CN + IP + L ++ L+LS N+L+ + P +F L H++ L + +++ +
Sbjct: 194 MCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250
Query: 485 LVELKTLEVFSLAFNNLS 502
L++L +LA NNL+
Sbjct: 251 FDNLQSLVEINLAHNNLT 268
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 27/181 (14%)
Query: 301 TKLKTLFLVNDSLAGPFRLPIHSHKR---LRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357
+KLK L+L N+ + +P ++ R LR+LD+ +I + L NL N+
Sbjct: 136 SKLKELWLRNNPIES---IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192
Query: 358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLS 417
+M L IP+ I L + LDLS N L+ P G ++L L + + ++ +
Sbjct: 193 AMCNLR-EIPNLTPLIKLDE-LDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQ---VI 246
Query: 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
+ D NL + +NL+HNNLT L F+ L H+E + L +N
Sbjct: 247 ERNAFD---------------NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
Query: 478 N 478
N
Sbjct: 292 N 292
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIG-ESTPSLKYLSLSDFTLSTNSSRILD 143
+++ F H + LE L + R I ++I +L L L D L+T I +
Sbjct: 78 IIKVNSFKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTT----IPN 129
Query: 144 RGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEE 203
L L+EL+ NN + + + SLR LD+ + I+ L+++
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189
Query: 204 LHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNA 238
L+L+ + R +L PL +L D N L+A
Sbjct: 190 LNLAMCNLREIPNLTPLI---KLDELDLSGNHLSA 221
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 332 VSNN--NFQGHIPLEIGDILPNLIS-FNISMNALDGSIPSSFGNINLLKILDLSNNQLTG 388
SNN + +G EI LP I+ + N + P +F L+ +DLSNNQ++
Sbjct: 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 389 EIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG------LDLSCNKLIGHIPPQIGNLTR 442
P+ G L+ L L N + SL G L L+ NK+ +L
Sbjct: 71 LAPDAFQ-GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHN 129
Query: 443 IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
+ L+L N L + TFS L+ I+++ L+ N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 430 IGHIPP-QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 487
I IPP +++ ++LS+N ++ L P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 332 VSNN--NFQGHIPLEIGDILPNLIS-FNISMNALDGSIPSSFGNINLLKILDLSNNQLTG 388
SNN + +G EI LP I+ + N + P +F L+ +DLSNNQ++
Sbjct: 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 389 EIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSG------LDLSCNKLIGHIPPQIGNLTR 442
P+ G L+ L L N + SL G L L+ NK+ +L
Sbjct: 71 LAPDAFQ-GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129
Query: 443 IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
+ L+L N L + TFS L+ I+++ L+ N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 430 IGHIPP-QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 487
I IPP +++ ++LS+N ++ L P F L+ + SL L NK+ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 46/188 (24%)
Query: 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--- 413
+ NA+ P F N+ LL +L L N L+ +P + L L++SNN+LE
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIED 164
Query: 414 ---KVLSLLSGLDLSCNKLIG----------------------HIPPQIGNL-------- 440
+ + L L LS N+L IP + L
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224
Query: 441 -------TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 493
+ L L HNNLT + N + +DLSYN+L + H V+++ LE
Sbjct: 225 VVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282
Query: 494 FSLAFNNL 501
++ N L
Sbjct: 283 LYISNNRL 290
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 100/249 (40%), Gaps = 72/249 (28%)
Query: 292 FPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN--------FQG---- 339
P + +N L L L + L+ R H+ +L L +SNNN FQ
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 340 -----------HIPLEIGDILPNLISFNISMNALDG-SIP-------SSFGNINLLK--- 377
H+ L ++P+L N+S N L +IP +S +IN+++
Sbjct: 174 QNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230
Query: 378 -----ILDLSNNQLTG---------------------EIPEHLAVGCVYLDFLALSNN-- 409
IL L +N LT +I H V L+ L +SNN
Sbjct: 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 410 ---SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 466
+L G+ + L LDLS N L+ H+ R++ L L HN++ L ST LK
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK- 348
Query: 467 IESLDLSYN 475
+L LS+N
Sbjct: 349 --NLTLSHN 355
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 337 FQGHIPLEIGDIL----------PNLISF-NISMNALDGSIPSSFGNINLLKILDLSNNQ 385
+ HI ++ D+ +++F N +M L ++ SF + LL + DL +
Sbjct: 30 YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89
Query: 386 L-TGEIPEHLAVGCVYLDFLALSNNSLEGKVLS---LLSGLDLSCNKLIGHIPPQI-GNL 440
+ T + +Y+ F A+ L V LL+ L L N L +P I N
Sbjct: 90 IDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNT 146
Query: 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
++ TL++S+NNL + TF +++L LS N+L
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 144 RGLCSLMHLQELYKV------NNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAH 197
+ L L HL++L V +N LR LP +A + L +L S N L +A+
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG---VAN 506
Query: 198 LTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAE 239
L ++EL L +N + +++PL + RL + + + N L E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 144 RGLCSLMHLQELYKV------NNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAH 197
+ L L HL++L V +N LR LP +A + L +L S N L +A+
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG---VAN 506
Query: 198 LTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAE 239
L ++EL L +N + +++PL + RL + + + N L E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
L++L+LS +ST +L L+ LQE+ V L P+ + LR+L+VS
Sbjct: 250 LRFLNLSYNPISTIEGSMLH----ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 184 NQLTGSIASSPLAHLTSIEELHLSDN 209
NQLT ++ S + ++E L L N
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSN 330
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 20/176 (11%)
Query: 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT 387
R LD+ N + E P+L ++ N + P +F N+ L+ L L +N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 388 GEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 447
IP L V F LSN L+ LD+S NK++ + +L +++L
Sbjct: 94 -LIP--LGV------FTGLSN----------LTKLDISENKIVILLDYMFQDLYNLKSLE 134
Query: 448 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG 503
+ N+L + FS L +E L L L L L L V L N++
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Query: 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQL 386
L +LD+S N + D L NL S + N L +F +N L+ L L L
Sbjct: 106 LTKLDISENKIVILLDYMFQD-LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 387 TGEIPEHLAV--GCVYLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLT 441
T E L+ G + L L+ N++ K L L L++S + + P
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN---GKIPHQLVELKTLEV 493
+ +L+++H NLT + +L ++ L+LSYN ++ G + H+L+ L+ +++
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 137/338 (40%), Gaps = 67/338 (19%)
Query: 148 SLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLS 207
S HL+EL N + P N+ +LR L + SN+L I L+++ +L +S
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112
Query: 208 DNHFRIPISLEPLFNH-SRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGA 266
+N +I I L+ +F LK + +N+L + S+ + L+ L L +
Sbjct: 113 EN--KIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEK--CNLT 165
Query: 267 TFP-KFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHK 325
+ P + L H H L + L H +N + D +S K
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINA------------------IRD----------YSFK 197
Query: 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ 385
RL +L V LEI LD P+ +NL L +++
Sbjct: 198 RLYRLKV----------LEIS-----------HWPYLDTMTPNCLYGLNLTS-LSITHCN 235
Query: 386 LTGEIPEHLAVGCVYLDFLALSNN---SLEGKVLS---LLSGLDLSCNKLIGHIPPQIGN 439
LT +P VYL FL LS N ++EG +L L + L +L P
Sbjct: 236 LTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477
L ++ LN+S N LT L S F ++ ++E+L L N L
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 72/203 (35%), Gaps = 12/203 (5%)
Query: 334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH 393
+ N H+P NL + N L ++F + LL+ LDLS+N +
Sbjct: 39 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 98
Query: 394 LAVGCVYLDFLALSNNSLEGKVLSLLSGL---------DLSCNKLIGHIPPQIGNLTRIQ 444
G L L L L+ L GL D + L +GNLT
Sbjct: 99 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH-- 156
Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
L L N ++ + F L ++ L L N++ PH +L L L NNLS
Sbjct: 157 -LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
Query: 505 IPEWKAQFATFNESSYEGNTFLC 527
E A N ++C
Sbjct: 216 PTEALAPLRALQYLRLNDNPWVC 238
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 72/203 (35%), Gaps = 12/203 (5%)
Query: 334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH 393
+ N H+P NL + N L ++F + LL+ LDLS+N +
Sbjct: 40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99
Query: 394 LAVGCVYLDFLALSNNSLEGKVLSLLSGL---------DLSCNKLIGHIPPQIGNLTRIQ 444
G L L L L+ L GL D + L +GNLT
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH-- 157
Query: 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
L L N ++ + F L ++ L L N++ PH +L L L NNLS
Sbjct: 158 -LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 505 IPEWKAQFATFNESSYEGNTFLC 527
E A N ++C
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVC 239
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
L ++ DL K+ +PP L+L +N +T + F NLK++ +L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
K++ P L LE L+ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN--- 478
LDL NK+ NL + TL L +N ++ + P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 479 GKIPHQLVELKTLE 492
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 62/355 (17%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
G+ L +L ++ NN L P + N+T L + +++NQ+ +PLA+LT++ L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 117
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGD 264
L +N ++PL N + L + +N + ++I+ LT+ LQ L +G+
Sbjct: 118 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQL----SFGN 165
Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
T K L + LE +D+S K++ +L T L++L N+ ++ L I ++
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN 222
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
L +L ++ N + +IG + L NL +++ N + P + L L L
Sbjct: 223 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273
Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPP--- 435
NQ++ P G L L L+ N LE L L+ L L N I I P
Sbjct: 274 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSS 329
Query: 436 ------------------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
+ NLT I L+ HN ++ L P +NL I L L
Sbjct: 330 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 31/132 (23%)
Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
L L LS T+S S+ GL SL L +V DL+ +AN+T+L LD+SS
Sbjct: 136 LNRLELSSNTISDISAL---SGLTSLQQLSFGNQVT-DLK-----PLANLTTLERLDISS 186
Query: 184 NQ------------LTGSIAS-------SPLAHLTSIEELHLSDNHFRIPISLEPLFNHS 224
N+ L IA+ +PL LT+++EL L+ N + +L L N +
Sbjct: 187 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 246
Query: 225 RLKIFDAENNEL 236
L D NN++
Sbjct: 247 DL---DLANNQI 255
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
+ SL LQ L+ NN + S +AN+T++ L NQ++ +PLA+LT I +L
Sbjct: 327 VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLG 381
Query: 206 LSDNHF 211
L+D +
Sbjct: 382 LNDQAW 387
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILD--LSNNQLTGEIPEHLAVGCVYLDFLAL 406
L NL N S N L P NL K++D ++NNQ+ P L L L
Sbjct: 67 LNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITP---LANLTNLTGLTL 119
Query: 407 SNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462
NN + K L+ L+ L+LS N I I G LT +Q L+ N +T L P +
Sbjct: 120 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFG-NQVTDLKP--LA 174
Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
NL +E LD+S NK++ L +L LE N +S P
Sbjct: 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 34/200 (17%)
Query: 41 LHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100
L N TNL LS ++ IS + +++ L SL+ LS N V + + +LE L
Sbjct: 130 LKNLTNLNRLELSSNT--ISDISALSGLT-SLQQLSFG----NQVTDLKPLANLTTLERL 182
Query: 101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNS--SRILDRGLCSLMHLQELYKV 158
++ ++ S + ++ + T +L+ L ++TN+ S I G+ L +L EL
Sbjct: 183 DISSNKV----SDISVLAKLT-NLESL------IATNNQISDITPLGI--LTNLDELSLN 229
Query: 159 NNDLR--GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS 216
N L+ G+L A++T+L LD+++NQ++ +PL+ LT + EL L N +
Sbjct: 230 GNQLKDIGTL----ASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS---N 279
Query: 217 LEPLFNHSRLKIFDAENNEL 236
+ PL + L + N+L
Sbjct: 280 ISPLAGLTALTNLELNENQL 299
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 475
L ++ DL K+ +PP L+L +N +T + F NLK++ +L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 476 KLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
K++ P L LE L+ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN--- 478
LDL NK+ NL + TL L +N ++ + P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 479 GKIPHQLVELKTLE 492
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 18/157 (11%)
Query: 351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS 410
NL + NAL G ++F + LL+ LDLS+N + G +L L L
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 411 LEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 470
L+ L G L +Q L L NNL L +TF +L ++ L
Sbjct: 116 LQELGPGLFRG------------------LAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
L N++ H L +L+ L N+++ P
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 62/355 (17%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
G+ L +L ++ NN L P + N+T L + +++NQ+ +PLA+LT++ L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 116
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGD 264
L +N ++PL N + L + +N + ++I+ LT+ LQ L +G+
Sbjct: 117 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQL----SFGN 164
Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
T K L + LE +D+S K++ +L T L++L N+ ++ L I ++
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN 221
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
L +L ++ N + +IG + L NL +++ N + P + L L L
Sbjct: 222 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 272
Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPP--- 435
NQ++ P G L L L+ N LE L L+ L L N I I P
Sbjct: 273 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSS 328
Query: 436 ------------------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
+ NLT I L+ HN ++ L P +NL I L L
Sbjct: 329 LTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
+ SL LQ L+ NN + S +AN+T++ L NQ++ +PLA+LT I +L
Sbjct: 326 VSSLTKLQRLFFANN--KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLG 380
Query: 206 LSDNHF 211
L+D +
Sbjct: 381 LNDQAW 386
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 31/132 (23%)
Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
L L LS T+S S+ GL SL L +V DL+ +AN+T+L LD+SS
Sbjct: 135 LNRLELSSNTISDISAL---SGLTSLQQLSFGNQVT-DLK-----PLANLTTLERLDISS 185
Query: 184 NQ------------LTGSIAS-------SPLAHLTSIEELHLSDNHFRIPISLEPLFNHS 224
N+ L IA+ +PL LT+++EL L+ N + +L L N +
Sbjct: 186 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 245
Query: 225 RLKIFDAENNEL 236
L D NN++
Sbjct: 246 DL---DLANNQI 254
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 34/200 (17%)
Query: 41 LHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100
L N TNL LS ++ IS + +++ L SL+ LS N V + + +LE L
Sbjct: 129 LKNLTNLNRLELSSNT--ISDISALSGLT-SLQQLSFG----NQVTDLKPLANLTTLERL 181
Query: 101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNS--SRILDRGLCSLMHLQELYKV 158
++ ++ S + ++ + T +L+ L ++TN+ S I G+ L +L EL
Sbjct: 182 DISSNKV----SDISVLAKLT-NLESL------IATNNQISDITPLGI--LTNLDELSLN 228
Query: 159 NNDLR--GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS 216
N L+ G+L A++T+L LD+++NQ++ +PL+ LT + EL L N +
Sbjct: 229 GNQLKDIGTL----ASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS---N 278
Query: 217 LEPLFNHSRLKIFDAENNEL 236
+ PL + L + N+L
Sbjct: 279 ISPLAGLTALTNLELNENQL 298
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILD--LSNNQLTGEIPEHLAVGCVYLDFLAL 406
L NL N S N L P NL K++D ++NNQ+ P L L L
Sbjct: 66 LNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITP---LANLTNLTGLTL 118
Query: 407 SNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462
NN + K L+ L+ L+LS N I I G LT +Q L+ N +T L P +
Sbjct: 119 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFG-NQVTDLKP--LA 173
Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
NL +E LD+S NK++ L +L LE N +S P
Sbjct: 174 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 215
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 62/355 (17%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
G+ L +L ++ NN L P + N+T L + +++NQ+ +PLA+LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 112
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGD 264
L +N ++PL N + L + +N + ++I+ LT+ LQ L +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQL----NFGN 160
Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
T K L + LE +D+S K++ +L T L++L N+ ++ L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
L +L ++ N + +IG + L NL +++ N + P + L L L
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPP--- 435
NQ++ P G L L L+ N LE L L+ L L N I I P
Sbjct: 269 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSS 324
Query: 436 ------------------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
+ NLT I L+ HN ++ L P +NL I L L
Sbjct: 325 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILD--LSNNQLTGEIPEHLAVGCVYLDFLAL 406
L NL N S N L P NL K++D ++NNQ+ P L L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITP---LANLTNLTGLTL 114
Query: 407 SNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462
NN + K L+ L+ L+LS N I I G LT +Q LN N +T L P +
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFG-NQVTDLKP--LA 169
Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
NL +E LD+S NK++ L +L LE N +S P
Sbjct: 170 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
+ SL LQ L+ NN + S +AN+T++ L NQ++ +PLA+LT I +L
Sbjct: 322 VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLG 376
Query: 206 LSDNHF 211
L+D +
Sbjct: 377 LNDQAW 382
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
L L LS T+S S+ GL SL L +V DL+ +AN+T+L LD+SS
Sbjct: 131 LNRLELSSNTISDISAL---SGLTSLQQLNFGNQVT-DLK-----PLANLTTLERLDISS 181
Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHF 211
N+++ S LA LT++E L ++N
Sbjct: 182 NKVSD---ISVLAKLTNLESLIATNNQI 206
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 62/355 (17%)
Query: 145 GLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204
G+ L +L ++ NN L P + N+T L + +++NQ+ +PLA+LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI---TPLANLTNLTGL 112
Query: 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGD 264
L +N ++PL N + L + +N + ++I+ LT+ LQ L +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQL----NFGN 160
Query: 265 GATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324
T K L + LE +D+S K++ +L T L++L N+ ++ L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLS 382
L +L ++ N + +IG + L NL +++ N + P + L L L
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPP--- 435
NQ++ P G L L L+ N LE L L+ L L N I I P
Sbjct: 269 ANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSS 324
Query: 436 ------------------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472
+ NLT I L+ HN ++ L P +NL I L L
Sbjct: 325 LTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 349 LPNLISFNISMNALDGSIPSSFGNINLLKILD--LSNNQLTGEIPEHLAVGCVYLDFLAL 406
L NL N S N L P NL K++D ++NNQ+ P L L L
Sbjct: 62 LNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITP---LANLTNLTGLTL 114
Query: 407 SNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462
NN + K L+ L+ L+LS N I I G LT +Q LN N +T L P +
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFG-NQVTDLKP--LA 169
Query: 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506
NL +E LD+S NK++ L +L LE N +S P
Sbjct: 170 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 146 LCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELH 205
+ SL LQ L+ NN + S +AN+T++ L NQ++ +PLA+LT I +L
Sbjct: 322 VSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLG 376
Query: 206 LSDNHF 211
L+D +
Sbjct: 377 LNDQAW 382
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSS 183
L L LS T+S S+ GL SL L +V DL+ +AN+T+L LD+SS
Sbjct: 131 LNRLELSSNTISDISAL---SGLTSLQQLNFGNQVT-DLK-----PLANLTTLERLDISS 181
Query: 184 NQLTGSIASSPLAHLTSIEELHLSDNHF 211
N+++ S LA LT++E L ++N
Sbjct: 182 NKVSD---ISVLAKLTNLESLIATNNQI 206
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 148 SLMHLQELYKVNNDLRGSLPWCV-ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL 206
SL++L+ELY +N L G+LP V ++T L +LD+ +NQLT + S+ L ++EL +
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 207 SDNHF-RIPISLEPLFNHSRLKIFDAENNELNA 238
N +P +E L + + L + + N+L +
Sbjct: 120 CCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 430 IGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488
+G +P + +LT++ L+L N LT L + F L H++ L + NKL ++P + L
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134
Query: 489 KTLEVFSLAFNNL 501
L +L N L
Sbjct: 135 THLTHLALDQNQL 147
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 409 NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
NS+ + + LDLS N++ + +Q L L+ N + + +FS+L +E
Sbjct: 44 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 469 SLDLSYNKLN 478
LDLSYN L+
Sbjct: 104 HLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 409 NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468
NS+ + + LDLS N++ + +Q L L+ N + + +FS+L +E
Sbjct: 18 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 469 SLDLSYNKLN 478
LDLSYN L+
Sbjct: 78 HLDLSYNYLS 87
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480
Q+ NL+ +Q+LNLS+N L F +E LDL++ +L K
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 142/310 (45%), Gaps = 32/310 (10%)
Query: 42 HNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLN 101
H F+ L+ L+ + H+S L S +LK L +S + + + +F SL HL+
Sbjct: 275 HCFSGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLS 331
Query: 102 ME--RARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVN 159
++ R+ T L E+ +L+ L LS + T S + L +L HLQ L
Sbjct: 332 IKGNTKRLELGTGCL----ENLENLRELDLSHDDIET--SDCCNLQLRNLSHLQSLNLSY 385
Query: 160 NDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP 219
N+ L +LD++ +L A SP +L ++ L+LS H + IS E
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS--HSLLDISSEQ 443
Query: 220 LFNH-SRLKIFDAENNEL-NAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQ-H 276
LF+ L+ + + N I ++ SL T +L+ L+LS + D ++ + +
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLS--FCDLSSIDQHAFTSLK 500
Query: 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFL----VNDSLAGPFRLPIHSHKR---LRQ 329
+ +VDLSH ++ +E + LK ++L + S+ P LPI S +R LRQ
Sbjct: 501 MMNHVDLSHNRLTSSS----IEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556
Query: 330 --LDVSNNNF 337
LD + +N
Sbjct: 557 NPLDCTCSNI 566
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 23/198 (11%)
Query: 325 KRLRQLDVSNNNFQGHIPLEIGDI-------LPNLISFNISMNALDGSIPSSFGNINLLK 377
+ LR+LD+S H +E D L +L S N+S N +F L+
Sbjct: 350 ENLRELDLS------HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403
Query: 378 ILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL-DLSCNKLIG-HIPP 435
+LDL+ +L + + L L LS++ L+ L GL L L G H P
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463
Query: 436 -------QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488
+ L R++ L LS +L+ + F++LK + +DLS+N+L L L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 489 KTLEVFSLAFNNLSGEIP 506
K + +LA N++S +P
Sbjct: 524 KGI-YLNLASNHISIILP 540
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNL 501
N+L
Sbjct: 182 NSL 184
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 64 SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
S+A+L P L L++ CE+ + P +L+ L+ + + P ++G++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLD-LSHNQLQSLP------LLGQTL 99
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
P+L L +S L++ L RGL LQELY N+L+ P + L L +
Sbjct: 100 PALTVLDVSFNRLTSLPLGAL-RGL---GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
++N LT + + L L +++ L L +N + IP
Sbjct: 156 ANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNL 501
N+L
Sbjct: 182 NSL 184
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 165 SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI--PISLEPLFN 222
SLP + +L +LDVS N+LT S+ L L ++EL+L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 223 HSRLKIFDAENNELNA 238
+L + + EL A
Sbjct: 150 LEKLSLANNNLTELPA 165
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 114 LQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM 173
L ++G++ P+L L +S L++ L RGL LQELY N+L+ P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLG---ELQELYLKGNELKTLPPGLLTPT 147
Query: 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
L L +++N LT + + L L +++ L L +N + IP
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNLSGEIPEWKAQFATFNESSYEGNTFLC 527
N+L IP+ + GN +LC
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 64 SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
S+A+L P L L++ CE+ + P +L+ L+ + + P ++G++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLD-LSHNQLQSLP------LLGQTL 99
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
P+L L +S L++ L RGL LQELY N+L+ P + L L +
Sbjct: 100 PALTVLDVSFNRLTSLPLGAL-RGL---GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
++N LT + + L L +++ L L +N + IP
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNL 501
N+L
Sbjct: 182 NSL 184
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 165 SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI--PISLEPLFN 222
SLP + +L +LDVS N+LT S+ L L ++EL+L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 223 HSRLKIFDAENNELNA 238
+L + + EL A
Sbjct: 150 LEKLSLANNNLTELPA 165
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 66 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N L ++P L+ L+ L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 499 NNL 501
N+L
Sbjct: 182 NSL 184
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 165 SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI--PISLEPLFN 222
SLP + +L +LDVS N+LT S+ L L ++EL+L N + P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 223 HSRLKIFDAENNELNA 238
+L + + EL A
Sbjct: 150 LEKLSLANNNLTELPA 165
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN---NSLEGKV---LSL 418
SIPS G +K LDLS N++T I C L L L + N++EG L
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDL----S 473
L LDLS N L G L+ ++ LNL N L + S F NL ++++L + +
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 161
Query: 474 YNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
++++ L L LE+ +L+ N +
Sbjct: 162 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN 439
+L+ Q+ G +P +G + L L + L G+ L L+ LD+S N+L +
Sbjct: 67 ELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 123
Query: 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAF 498
L +Q L L N L L P + +E L L+ N L ++P L+ L+ L+ L
Sbjct: 124 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 182
Query: 499 NNLSGEIPEWKAQFATFNESSYEGNTFLC 527
N+L IP+ + GN +LC
Sbjct: 183 NSLY-TIPKGFFGSHLLPFAFLHGNPWLC 210
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 64 SIASLFP--SLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
S+A+L P L L++ CE+ + P +L+ L+ + + P ++G++
Sbjct: 48 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLD-LSHNQLQSLP------LLGQTL 100
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
P+L L +S L++ L RGL LQELY N+L+ P + L L +
Sbjct: 101 PALTVLDVSFNRLTSLPLGAL-RGL---GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNH-FRIP 214
++N LT + + L L +++ L L +N + IP
Sbjct: 157 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 65 IASLFPSLKNLS-MSYCEVNG--VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGEST 121
I L P LKNL+ ++ E++G + +S++ L++ +I T + G S
Sbjct: 75 ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI---TDVTPLAGLSN 130
Query: 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDV 181
+ YL L+ T N S L L +LQ L N + P +AN++ L L
Sbjct: 131 LQVLYLDLNQIT---NISP-----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180
Query: 182 SSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL 236
N+++ SPLA L ++ E+HL +N + PL N S L I N +
Sbjct: 181 DDNKISDI---SPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTI 229
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN---NSLEGKV---LSL 418
SIPS G +K LDLS N++T I C L L L + N++EG L
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDL----S 473
L LDLS N L G L+ ++ LNL N L + S F NL ++++L + +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 474 YNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504
++++ L L LE+ +L+ N +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 390 IPEHLAVGCVYLDFLALSNNSLEGKV---LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 446
+P + YLD S SL V L+ L+ L L NKL LT + L
Sbjct: 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81
Query: 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG---KIPHQLVELKTLEVF 494
NLS N L L F L ++ L L+ N+L + +L +LK L ++
Sbjct: 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 134 LSTNSSRILDRGLCS-LMHLQELYKVNNDLRGSLPWCVAN-MTSLRILDVSSNQLTGSIA 191
L TNS + L G+ L L +LY N L+ SLP V N +TSL L++S+NQL S+
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLP 92
Query: 192 SSPLAHLTSIEELHLSDNHFR 212
+ LT ++EL L+ N +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQ 113
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 35/119 (29%)
Query: 349 LPNLISFNISMNA----------LDG----SIPSSFGNINLLKILDLSNNQLTGEIPEHL 394
L NL FNIS N L+G +P+ N++ L++LDLS+N+LT +P L
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 395 AVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 453
C L + +N ++ +P + GNL +Q L + N L
Sbjct: 290 G-SCFQLKYFYFFDN-------------------MVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476
L LDLS N I +I I + L L+ N+LT L P+ NL ++ LDLS+N+
Sbjct: 224 QLWHALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNR 281
Query: 477 LNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWK 509
L +P +L L+ F F+N+ +P W+
Sbjct: 282 LTS-LPAELGSCFQLKYFYF-FDNMVTTLP-WE 311
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 352 LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411
L + ++ N L ++P+S ++N L+ L + E+PE LA ++ S
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS----------TDASG 177
Query: 412 EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 471
E + L L L L I +P I NL +++L + ++ L+ L P+ +L +E LD
Sbjct: 178 EHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELD 235
Query: 472 L 472
L
Sbjct: 236 L 236
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 110 NTSFLQIIGESTPSL------KYLSLSDFTLSTNSSRILDRGLC-SLMHLQELYKVNNDL 162
N ++L + G SL K +L + L N + L G+ L +L LY +N L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 163 RGSLPWCVAN-MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR 212
+ SLP V + +T+L LD+ +NQL S+ LT +++L L+DN +
Sbjct: 146 Q-SLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 420 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
SG + C+ K + +P G T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
+L L SL N L IP
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 420 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
SG + C+ K + +P G T Q L L N +T L P F L + LDL N+L
Sbjct: 18 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
+L L SL N L IP
Sbjct: 76 VLPAGVFDKLTQLTQLSLNDNQLK-SIPR 103
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 420 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478
SG + C+ K + +P G T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPE 507
+L L SL N L IP
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 26/126 (20%)
Query: 369 SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK 428
+F ++ L IL L NQ ++ G L+ L L+ +L+G VLS
Sbjct: 74 TFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLS----------- 121
Query: 429 LIGHIPPQIGN----LTRIQTLNLSHNNLTGLIPSTFS-NLKHIESLDLSYNKLNGKIPH 483
GN LT ++ L L NN+ + P++F N++ LDL++NK+
Sbjct: 122 ---------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
Query: 484 QLVELK 489
L+ +
Sbjct: 173 DLLNFQ 178
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
Query: 400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 459
+ +F N + +G S + DLS +K+ + + T ++ L L+ N + + +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 460 TFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSLAFNNLSGEIP--EWKAQFATFN 516
F L H++ L L N+L +P + + L +L+ L N P ++ +++ N
Sbjct: 318 AFWGLTHLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 376
Query: 517 ESSYEGNTFLCGLPLPICRSPATTPEASI 545
+G+ G P+ RS AS+
Sbjct: 377 SQKEQGSAKCSGSGKPV-RSIICPTSASL 404
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 424 LSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPS-TFSNLKHIESLDLSYNKLNGKI 481
LSC+K + ++P + + T + L+LSHNNL+ L T + L ++ SL LS+N LN
Sbjct: 23 LSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 482 PHQLVELKTLEVFSLAFNNL 501
V + L L+ N+L
Sbjct: 81 SEAFVPVPNLRYLDLSSNHL 100
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN----GKIPHQL 485
+ +P I + TR LNL NN+ + TF +L H+E L L N + G + L
Sbjct: 66 LSEVPQGIPSNTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-NGL 122
Query: 486 VELKTLEVF 494
L TLE+F
Sbjct: 123 ASLNTLELF 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,275,531
Number of Sequences: 62578
Number of extensions: 770540
Number of successful extensions: 2260
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 439
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)