Query 042884
Match_columns 614
No_of_seqs 531 out of 4057
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.6E-56 5.6E-61 513.9 36.3 499 9-531 84-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.1E-56 2E-60 509.4 34.7 497 9-530 108-611 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.4E-45 7.3E-50 358.6 5.9 393 123-554 79-497 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-41 3.8E-46 332.6 4.7 204 297-503 241-453 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1E-40 2.2E-45 313.7 -14.1 439 9-526 59-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 9.2E-40 2E-44 307.2 -12.9 453 18-530 45-522 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.7E-35 1.2E-39 301.9 -6.3 470 8-525 11-488 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 6.4E-34 1.4E-38 281.5 -4.0 367 121-531 6-380 (1255)
9 KOG0618 Serine/threonine phosp 100.0 2.5E-33 5.4E-38 289.8 -2.8 464 13-523 40-510 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 5E-33 1.1E-37 275.2 -1.6 369 14-452 3-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.1E-27 2.3E-32 225.9 -3.5 412 6-475 57-498 (498)
12 KOG4237 Extracellular matrix p 99.9 4.1E-27 8.9E-32 222.0 -0.7 253 276-531 67-364 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.8E-22 8.2E-27 230.7 27.1 338 90-476 553-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 2E-21 4.4E-26 224.6 27.7 333 145-500 553-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 2.1E-21 4.6E-26 208.3 18.0 265 150-509 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 6.3E-21 1.4E-25 204.8 16.9 265 122-485 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-18 3.3E-23 187.8 13.5 257 96-422 179-438 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-18 5.4E-23 186.1 14.1 102 277-393 242-343 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.3E-23 175.9 0.8 90 436-525 216-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-18 3.6E-23 174.5 0.7 246 252-500 24-318 (319)
21 KOG0617 Ras suppressor protein 99.6 3.6E-18 7.9E-23 143.5 -4.7 179 324-527 32-213 (264)
22 KOG0617 Ras suppressor protein 99.6 1.4E-17 3.1E-22 139.9 -5.5 168 7-192 23-190 (264)
23 PLN03150 hypothetical protein; 99.5 7E-14 1.5E-18 151.3 8.8 117 418-534 419-537 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 2.3E-13 4.9E-18 135.5 -3.6 188 324-522 74-269 (722)
25 KOG0532 Leucine-rich repeat (L 99.2 3.7E-13 8.1E-18 134.0 -3.4 195 275-500 74-271 (722)
26 KOG3207 Beta-tubulin folding c 99.2 9.8E-12 2.1E-16 120.4 2.1 207 298-504 118-341 (505)
27 COG4886 Leucine-rich repeat (L 99.1 7.5E-11 1.6E-15 122.3 8.4 198 280-507 97-295 (394)
28 KOG1909 Ran GTPase-activating 99.1 3.8E-12 8.2E-17 119.9 -3.0 97 90-187 87-198 (382)
29 KOG3207 Beta-tubulin folding c 99.1 3.6E-11 7.8E-16 116.5 2.8 221 8-239 111-341 (505)
30 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.1E-16 112.5 0.3 130 350-504 284-414 (490)
31 PF14580 LRR_9: Leucine-rich r 99.1 1.9E-10 4E-15 102.0 6.3 107 275-387 18-126 (175)
32 PF14580 LRR_9: Leucine-rich r 99.1 4.5E-11 9.7E-16 105.9 2.2 131 91-232 15-148 (175)
33 KOG1259 Nischarin, modulator o 99.1 5.6E-11 1.2E-15 109.5 2.6 130 274-412 282-412 (490)
34 COG4886 Leucine-rich repeat (L 99.0 2.9E-10 6.3E-15 117.9 6.1 194 305-527 97-291 (394)
35 PLN03150 hypothetical protein; 99.0 1E-09 2.2E-14 119.2 9.2 92 416-507 441-533 (623)
36 PF13855 LRR_8: Leucine rich r 99.0 3.5E-10 7.6E-15 82.3 2.8 59 442-500 2-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.9 6.7E-10 1.5E-14 80.8 3.3 61 417-477 1-61 (61)
38 KOG0531 Protein phosphatase 1, 98.9 1.2E-10 2.6E-15 120.9 -1.1 220 121-387 71-290 (414)
39 KOG1909 Ran GTPase-activating 98.9 7.7E-11 1.7E-15 111.2 -2.7 211 13-237 87-311 (382)
40 KOG0531 Protein phosphatase 1, 98.9 3.8E-10 8.3E-15 117.1 0.2 204 274-507 116-323 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1E-08 2.2E-13 113.9 4.4 129 94-234 522-652 (889)
42 KOG1859 Leucine-rich repeat pr 98.6 1.6E-09 3.6E-14 111.3 -3.5 176 342-528 102-294 (1096)
43 KOG4658 Apoptotic ATPase [Sign 98.6 7.3E-08 1.6E-12 107.1 7.8 128 18-160 523-652 (889)
44 KOG1859 Leucine-rich repeat pr 98.5 1.8E-09 4E-14 111.0 -6.2 178 40-237 104-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 8.6E-09 1.9E-13 95.3 -5.7 173 326-500 186-374 (419)
46 KOG2120 SCF ubiquitin ligase, 98.4 6.1E-09 1.3E-13 96.3 -6.8 184 19-209 186-373 (419)
47 KOG4579 Leucine-rich repeat (L 98.2 5.9E-08 1.3E-12 79.5 -3.2 106 352-478 29-136 (177)
48 KOG2982 Uncharacterized conser 98.2 5.6E-07 1.2E-11 83.5 2.2 65 415-479 197-263 (418)
49 KOG2982 Uncharacterized conser 98.1 5.6E-07 1.2E-11 83.5 0.8 86 94-184 70-156 (418)
50 KOG4579 Leucine-rich repeat (L 98.1 3.4E-07 7.5E-12 75.1 -1.5 114 277-395 28-143 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.1 2.8E-07 6E-12 84.4 -2.5 196 94-315 29-256 (388)
52 KOG1644 U2-associated snRNP A' 98.0 8.2E-06 1.8E-10 71.8 5.8 129 97-235 21-151 (233)
53 PRK15386 type III secretion pr 98.0 2E-05 4.4E-10 78.8 9.1 130 298-451 49-187 (426)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 53.4 2.9 36 466-502 2-37 (44)
55 PF13306 LRR_5: Leucine rich r 97.8 3.8E-05 8.2E-10 65.6 6.2 123 271-402 7-129 (129)
56 KOG3665 ZYG-1-like serine/thre 97.8 9.3E-06 2E-10 88.3 2.6 139 95-239 122-265 (699)
57 PRK15386 type III secretion pr 97.8 0.00012 2.7E-09 73.3 10.3 134 323-476 50-188 (426)
58 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.6E-10 52.2 3.2 36 151-187 2-37 (44)
59 KOG3665 ZYG-1-like serine/thre 97.8 3.8E-06 8.2E-11 91.3 -1.0 160 122-309 122-283 (699)
60 KOG1644 U2-associated snRNP A' 97.8 3.3E-05 7.1E-10 68.1 5.0 118 403-522 23-149 (233)
61 PF13306 LRR_5: Leucine rich r 97.7 6.1E-05 1.3E-09 64.3 5.8 110 292-408 3-112 (129)
62 COG5238 RNA1 Ran GTPase-activa 97.5 4.2E-05 9.2E-10 70.4 2.2 189 11-213 85-286 (388)
63 KOG4341 F-box protein containi 97.1 2.2E-05 4.9E-10 76.6 -4.4 39 274-312 399-437 (483)
64 KOG2739 Leucine-rich acidic nu 96.8 0.0006 1.3E-08 63.1 2.1 85 321-407 61-151 (260)
65 KOG2123 Uncharacterized conser 96.8 2.9E-05 6.2E-10 71.8 -6.7 81 121-210 18-99 (388)
66 KOG2123 Uncharacterized conser 96.7 0.00016 3.5E-09 67.0 -2.9 81 326-412 20-101 (388)
67 KOG4341 F-box protein containi 96.6 0.00049 1.1E-08 67.6 -0.5 162 69-234 268-436 (483)
68 KOG2739 Leucine-rich acidic nu 96.5 0.0021 4.5E-08 59.6 3.4 62 93-157 89-150 (260)
69 KOG1947 Leucine rich repeat pr 95.0 0.0049 1.1E-07 65.8 -0.9 113 274-386 186-307 (482)
70 KOG1947 Leucine rich repeat pr 94.8 0.0064 1.4E-07 64.9 -0.8 114 17-134 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3.1E-07 32.0 0.5 12 467-478 2-13 (22)
72 TIGR00864 PCC polycystin catio 94.4 0.032 6.8E-07 68.1 3.8 76 471-552 1-77 (2740)
73 PF00560 LRR_1: Leucine Rich R 94.3 0.018 3.9E-07 31.6 0.7 11 153-163 3-13 (22)
74 KOG4308 LRR-containing protein 93.5 0.00052 1.1E-08 71.6 -11.9 190 47-238 89-304 (478)
75 KOG4308 LRR-containing protein 92.5 0.00098 2.1E-08 69.6 -11.6 194 19-212 88-303 (478)
76 smart00369 LRR_TYP Leucine-ric 92.1 0.11 2.4E-06 29.8 1.7 21 174-195 2-22 (26)
77 smart00370 LRR Leucine-rich re 92.1 0.11 2.4E-06 29.8 1.7 21 174-195 2-22 (26)
78 PF13504 LRR_7: Leucine rich r 91.7 0.11 2.5E-06 26.3 1.3 13 375-387 2-14 (17)
79 smart00369 LRR_TYP Leucine-ric 91.2 0.19 4.1E-06 28.8 2.1 16 465-480 2-17 (26)
80 smart00370 LRR Leucine-rich re 91.2 0.19 4.1E-06 28.8 2.1 16 465-480 2-17 (26)
81 KOG0473 Leucine-rich repeat pr 90.4 0.0061 1.3E-07 55.3 -7.0 83 417-502 42-124 (326)
82 KOG0473 Leucine-rich repeat pr 84.6 0.028 6E-07 51.2 -6.4 88 389-478 32-124 (326)
83 PF13516 LRR_6: Leucine Rich r 84.3 0.49 1.1E-05 26.4 0.8 16 45-60 2-17 (24)
84 KOG4242 Predicted myosin-I-bin 82.8 12 0.00026 38.4 10.3 158 96-258 215-387 (553)
85 KOG3864 Uncharacterized conser 82.0 0.15 3.2E-06 45.7 -2.9 35 349-383 150-185 (221)
86 smart00365 LRR_SD22 Leucine-ri 80.3 1.4 3E-05 25.2 1.7 17 17-33 1-17 (26)
87 KOG3864 Uncharacterized conser 74.4 0.96 2.1E-05 40.7 -0.1 35 46-80 102-136 (221)
88 smart00364 LRR_BAC Leucine-ric 71.7 2.8 6.1E-05 23.9 1.4 13 466-478 3-15 (26)
89 TIGR00864 PCC polycystin catio 70.1 2.8 6E-05 52.3 2.3 33 447-479 1-33 (2740)
90 smart00368 LRR_RI Leucine rich 67.9 4.4 9.6E-05 23.6 1.8 13 19-31 3-15 (28)
91 KOG4242 Predicted myosin-I-bin 64.3 24 0.00052 36.4 7.1 16 226-241 216-231 (553)
92 KOG3763 mRNA export factor TAP 61.3 3.8 8.2E-05 42.8 1.0 66 439-504 216-285 (585)
93 KOG3763 mRNA export factor TAP 60.4 4.2 9.1E-05 42.5 1.2 65 414-479 215-284 (585)
94 PF04478 Mid2: Mid2 like cell 47.2 26 0.00056 30.1 3.6 15 558-572 49-63 (154)
95 PF15102 TMEM154: TMEM154 prot 37.7 6.6 0.00014 33.3 -1.3 15 573-587 74-88 (146)
96 smart00367 LRR_CC Leucine-rich 37.0 35 0.00076 19.2 2.1 11 45-55 2-12 (26)
97 smart00082 LRRCT Leucine rich 23.3 40 0.00086 22.6 0.8 10 523-532 1-10 (51)
98 PF12191 stn_TNFRSF12A: Tumour 23.3 44 0.00096 27.5 1.2 12 576-587 97-108 (129)
99 PF08374 Protocadherin: Protoc 22.2 32 0.0007 31.3 0.2 23 558-580 38-60 (221)
100 PF05337 CSF-1: Macrophage col 21.0 16 0.00034 34.6 -2.0 20 566-585 234-253 (285)
101 PF15050 SCIMP: SCIMP protein 20.5 5.9 0.00013 31.9 -4.1 32 559-590 8-39 (133)
102 PF01102 Glycophorin_A: Glycop 20.3 5.4 0.00012 33.0 -4.6 21 563-583 69-89 (122)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-56 Score=513.91 Aligned_cols=499 Identities=29% Similarity=0.416 Sum_probs=403.2
Q ss_pred ccccccCCCCCCCEEECCCcccCCCCCCCCc--ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCcc
Q 042884 9 KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ--ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVV 86 (614)
Q Consensus 9 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~ 86 (614)
.+++.|..+++|++|+|++|++++. +| .+..+++|++|++++|.+.+..|. ..+++|+++++++|.+.+.+|
T Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~~~~~----ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p 157 (968)
T PLN00113 84 KISSAIFRLPYIQTINLSNNQLSGP----IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157 (968)
T ss_pred cCChHHhCCCCCCEEECCCCccCCc----CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCC
Confidence 3566788888888888888888754 44 345788888888888888766654 456788888888888776666
Q ss_pred CCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc
Q 042884 87 RGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL 166 (614)
Q Consensus 87 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (614)
. .++++++|++|++++|.+.+ .+|..+.+ +++|++|++++|.+.+ .+|. .+..+++|++|++++|++++.+
T Consensus 158 ~--~~~~l~~L~~L~L~~n~l~~--~~p~~~~~-l~~L~~L~L~~n~l~~---~~p~-~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 158 N--DIGSFSSLKVLDLGGNVLVG--KIPNSLTN-LTSLEFLTLASNQLVG---QIPR-ELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred h--HHhcCCCCCEEECccCcccc--cCChhhhh-CcCCCeeeccCCCCcC---cCCh-HHcCcCCccEEECcCCccCCcC
Confidence 3 57888888888888888776 77777777 8888888888888875 5555 7888888888888888888888
Q ss_pred CccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccC
Q 042884 167 PWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSL 246 (614)
Q Consensus 167 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 246 (614)
|..+.++++|++|++++|.+.+.+|.. ++++++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 888888888888888888888777764 7888888888888888876555 45778888888888888887766554443
Q ss_pred CCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCc
Q 042884 247 TTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKR 326 (614)
Q Consensus 247 ~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~ 326 (614)
..+|+.|++ .++...+..|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+++
T Consensus 307 ---l~~L~~L~l-~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 307 ---LQNLEILHL-FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred ---CCCCcEEEC-CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 347888888 667777778888888888888888888888777776 677888888888888888777777778888
Q ss_pred cCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEc
Q 042884 327 LRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL 406 (614)
Q Consensus 327 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 406 (614)
|+.|++++|.+.+.+|..+.. +++|+.|++++|++++..|..|..+++|+.|++++|.+++.+|..+ ..+++|+.|++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L 459 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSL 459 (968)
T ss_pred CCEEECcCCEecccCCHHHhC-CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh-ccCCCCcEEEC
Confidence 888888888888777776665 8888888888888888888888888888888888888886666554 56888888888
Q ss_pred cCCcccccc-----cCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCC
Q 042884 407 SNNSLEGKV-----LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481 (614)
Q Consensus 407 ~~n~l~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 481 (614)
++|++.+.. .++|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+++.+
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 888877643 356888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 482 PHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 482 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
|..|..+++|+.|++++|++++.+|..+..+..++.+++++|++.+..|.
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 88888888888888888888888888788888888888888888776553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.1e-56 Score=509.36 Aligned_cols=497 Identities=31% Similarity=0.450 Sum_probs=449.7
Q ss_pred cccccc-CCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccC
Q 042884 9 KLLQSM-GSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVR 87 (614)
Q Consensus 9 ~l~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 87 (614)
.+|..+ ..+++|++|+|++|++++. +| ...+++|++|++++|.+.+..|..+..+.+|+++++.+|.+.+.+|.
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~----~p-~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGS----IP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccc----cC-ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 567654 4899999999999999875 44 35688999999999999989999999999999999999998877774
Q ss_pred CCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC
Q 042884 88 GQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP 167 (614)
Q Consensus 88 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~ 167 (614)
.+.++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+.+ .+|. .+.++++|++|++++|.+++..|
T Consensus 183 --~~~~l~~L~~L~L~~n~l~~--~~p~~l~~-l~~L~~L~L~~n~l~~---~~p~-~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 183 --SLTNLTSLEFLTLASNQLVG--QIPRELGQ-MKSLKWIYLGYNNLSG---EIPY-EIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred --hhhhCcCCCeeeccCCCCcC--cCChHHcC-cCCccEEECcCCccCC---cCCh-hHhcCCCCCEEECcCceeccccC
Confidence 68999999999999999987 78899988 9999999999999986 6666 89999999999999999999999
Q ss_pred ccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCC
Q 042884 168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLT 247 (614)
Q Consensus 168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 247 (614)
..+.++++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~- 330 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTS- 330 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhHhc-
Confidence 99999999999999999999888765 7899999999999999987666 56789999999999999998776655543
Q ss_pred CCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCcc
Q 042884 248 TPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327 (614)
Q Consensus 248 ~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 327 (614)
.++|+.|++ .++...+..|..+..+++|+.|++++|++.+.+|.. +..+++|+.|++++|.+.+..+..+..+++|
T Consensus 331 --l~~L~~L~L-~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 331 --LPRLQVLQL-WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred --CCCCCEEEC-cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 348999999 677788889999999999999999999999888887 6778999999999999999888889999999
Q ss_pred CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEcc
Q 042884 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS 407 (614)
Q Consensus 328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 407 (614)
+.|++++|.+++.+|..+.. +++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|..+ ..++|+.|+++
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls 483 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLS 483 (968)
T ss_pred CEEECcCCEeeeECChhHhc-CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc--ccccceEEECc
Confidence 99999999999888877655 9999999999999999999999999999999999999998888754 56899999999
Q ss_pred CCcccccc------cCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCC
Q 042884 408 NNSLEGKV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481 (614)
Q Consensus 408 ~n~l~~~~------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 481 (614)
+|++++.. +++|+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|++++|++++.+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 99998643 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 482 PHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 482 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
|..+..+++|+.+++++|++.+.+|. ...+..+....+.||+..|+.+
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999997 4667778888899999999743
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-45 Score=358.64 Aligned_cols=393 Identities=24% Similarity=0.271 Sum_probs=303.5
Q ss_pred CcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCC
Q 042884 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIE 202 (614)
Q Consensus 123 ~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 202 (614)
.-++|++++|.++ .+....|.++++|+.+++.+|.++ .+|..-....+|+.|+|.+|.|. ++....+..++.|+
T Consensus 79 ~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr 152 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR 152 (873)
T ss_pred ceeeeeccccccc----cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence 3455777777776 454446677777777777777776 56655555556777777777776 56655566777777
Q ss_pred EEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEE
Q 042884 203 ELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVD 282 (614)
Q Consensus 203 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 282 (614)
.|||+.|.|+ .++...|..-.++++|+|++|+|+..... .|.++.+|..|.
T Consensus 153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~----------------------------~F~~lnsL~tlk 203 (873)
T KOG4194|consen 153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETG----------------------------HFDSLNSLLTLK 203 (873)
T ss_pred hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccc----------------------------cccccchheeee
Confidence 7777777766 55555666666677777777776654332 334556778888
Q ss_pred ccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcC
Q 042884 283 LSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNAL 362 (614)
Q Consensus 283 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 362 (614)
|++|+++ .+|...|..+++|+.|+|..|+|..+...+|.++++|+.|.+..|.|. .+.+++|-++.++++|+|+.|++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchh
Confidence 8888887 777777888888888888888888777778888888888888888887 66666666688888888888888
Q ss_pred CCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCCccCCcc
Q 042884 363 DGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHIPPQ 436 (614)
Q Consensus 363 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~~~~~~~ 436 (614)
...-.+++-++++|+.|++|+|.|. .+.......+++|++|+|++|+++. ..++.|++|.|++|.+...-..+
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 8777777888888888888888887 5554445677888888888888775 33677888999999998888889
Q ss_pred ccCCCcCCEEECcCCcCCCCCC---cCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccC
Q 042884 437 IGNLTRIQTLNLSHNNLTGLIP---STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA 513 (614)
Q Consensus 437 ~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 513 (614)
|.++++|++|||++|.+++.+. ..|.++++|+.|++.+|+|..+...+|.+++.|+.|||.+|.+...-|..|.++
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m- 439 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM- 439 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-
Confidence 9999999999999999986665 458899999999999999998777899999999999999999998888889888
Q ss_pred CcCcccccCCcCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCcc
Q 042884 514 TFNESSYEGNTFLCGLPLP-----------------ICRSPATTPEASIGNERDDNLI 554 (614)
Q Consensus 514 ~l~~~~~~~n~~~c~~~~~-----------------~c~~~~~~~~~~~~~~~~~~~~ 554 (614)
.|+.+.+..-.++|||.+. .|+.|+...+.++...+.++..
T Consensus 440 ~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lv 497 (873)
T KOG4194|consen 440 ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLV 497 (873)
T ss_pred hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhce
Confidence 8999999999999999763 4999998877776665555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-41 Score=332.59 Aligned_cols=204 Identities=25% Similarity=0.281 Sum_probs=104.5
Q ss_pred HhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccC
Q 042884 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLL 376 (614)
Q Consensus 297 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 376 (614)
|.++++|+.|.+..|.|.......|-++.++++|+|+.|++...-..+++. ++.|+.|+|+.|.|..+.++++..+++|
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchhhhcccc
Confidence 333334444444444443333333334444444444444433212222222 3344444444444433333333334444
Q ss_pred cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCCccC---CccccCCCcCCEEE
Q 042884 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIGHI---PPQIGNLTRIQTLN 447 (614)
Q Consensus 377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 447 (614)
++|+|++|+++ .+++.-|..+..|++|+|++|+++. ..+++|++|||++|.++..+ ...|.++++|+.|+
T Consensus 320 ~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 320 KELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred eeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 44444444443 3333333333444444444443322 22344444444444444222 24577778888888
Q ss_pred CcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884 448 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG 503 (614)
Q Consensus 448 L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 503 (614)
+.+|++..+...+|.++++|+.|||.+|.|..+-|++|..+ .|+.|-+..-.+-|
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 88888877777788888888888888888877778888777 77777776655554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-40 Score=313.73 Aligned_cols=439 Identities=26% Similarity=0.348 Sum_probs=240.7
Q ss_pred ccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCC
Q 042884 9 KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRG 88 (614)
Q Consensus 9 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~ 88 (614)
.+.+.+.++..|.+|++++|++... +++++.+..++.++.++|++. .+|..+....++..++.++|.+.. .++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~l----p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~- 131 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQL----PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPD- 131 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhC----CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCc-
Confidence 3444555555666666666665554 445555666666666666554 455556666666666666665542 332
Q ss_pred CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCc
Q 042884 89 QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW 168 (614)
Q Consensus 89 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~ 168 (614)
.++.+..|..++..+|.+. .+|+.++. +.+|..+++.+|++. ..|+. .-+++.|++||...|-++ .+|.
T Consensus 132 -~i~~~~~l~dl~~~~N~i~---slp~~~~~-~~~l~~l~~~~n~l~----~l~~~-~i~m~~L~~ld~~~N~L~-tlP~ 200 (565)
T KOG0472|consen 132 -SIGRLLDLEDLDATNNQIS---SLPEDMVN-LSKLSKLDLEGNKLK----ALPEN-HIAMKRLKHLDCNSNLLE-TLPP 200 (565)
T ss_pred -hHHHHhhhhhhhccccccc---cCchHHHH-HHHHHHhhccccchh----hCCHH-HHHHHHHHhcccchhhhh-cCCh
Confidence 3555566666666666655 55566555 556666666666665 45552 223666666666666655 5566
Q ss_pred cccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCC
Q 042884 169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT 248 (614)
Q Consensus 169 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 248 (614)
.++.+.+|+.|++.+|++. .+|. |..+..|++|+++.|.+. .++.+-...+.++.+||+++|++...
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~--------- 267 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEV--------- 267 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccC---------
Confidence 6666666666666666666 5663 566666666666666665 44545555666666666666665543
Q ss_pred CCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCC-----------
Q 042884 249 PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF----------- 317 (614)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~----------- 317 (614)
|..+.-+.+|++||+|+|.|+ .+|.. ++++ .|+.|-+.+|.++.+.
T Consensus 268 --------------------Pde~clLrsL~rLDlSNN~is-~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 268 --------------------PDEICLLRSLERLDLSNNDIS-SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEV 324 (565)
T ss_pred --------------------chHHHHhhhhhhhcccCCccc-cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence 333333444444444444444 33333 3333 4444444444332110
Q ss_pred ---------------------------C---CCCCCCCccCEEEccCCccccCCChhhhhcCC--CccEEEccCCcCCCC
Q 042884 318 ---------------------------R---LPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP--NLISFNISMNALDGS 365 (614)
Q Consensus 318 ---------------------------~---~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~--~L~~L~L~~n~l~~~ 365 (614)
+ .....+.+.+.|++++-+++ .+|.++|..-. -....+++.|++. .
T Consensus 325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-e 402 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-E 402 (565)
T ss_pred HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-h
Confidence 0 01123446777777777777 77777776322 2667777777777 5
Q ss_pred CccchhccccCc-EEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCC
Q 042884 366 IPSSFGNINLLK-ILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 444 (614)
Q Consensus 366 ~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 444 (614)
+|..+..+..+. .+.+++|.+. .+|..+ ..+++|..|++++|.+ . .+|..++++..|+
T Consensus 403 lPk~L~~lkelvT~l~lsnn~is-fv~~~l-~~l~kLt~L~L~NN~L------------------n-~LP~e~~~lv~Lq 461 (565)
T KOG0472|consen 403 LPKRLVELKELVTDLVLSNNKIS-FVPLEL-SQLQKLTFLDLSNNLL------------------N-DLPEEMGSLVRLQ 461 (565)
T ss_pred hhhhhHHHHHHHHHHHhhcCccc-cchHHH-Hhhhcceeeecccchh------------------h-hcchhhhhhhhhh
Confidence 566666665543 3455555553 555444 4555566655555544 3 3444455555555
Q ss_pred EEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCc
Q 042884 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNT 524 (614)
Q Consensus 445 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~ 524 (614)
.|++++|++. ..|.....+..++.+-.++|++..+.|+.+.++.+|..||+.+|.++ .+|..++.+.+++++.+.|||
T Consensus 462 ~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 462 TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence 5555555554 33444444444455555555555444444555555555555555555 233335555555555555555
Q ss_pred CC
Q 042884 525 FL 526 (614)
Q Consensus 525 ~~ 526 (614)
+.
T Consensus 540 fr 541 (565)
T KOG0472|consen 540 FR 541 (565)
T ss_pred cC
Confidence 54
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.2e-40 Score=307.24 Aligned_cols=453 Identities=24% Similarity=0.293 Sum_probs=363.7
Q ss_pred CCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCC
Q 042884 18 PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSL 97 (614)
Q Consensus 18 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L 97 (614)
..++.|++++|.+... .+.+..+..|.+|++++|++. ..|.+++.+..+..++.++|+.. .+|+ .+..+.+|
T Consensus 45 v~l~~lils~N~l~~l----~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~--~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL----REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE--QIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhhc----cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH--HHhhhhhh
Confidence 4578899999999877 568889999999999999976 77889999999999999999876 4665 58889999
Q ss_pred CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCc
Q 042884 98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177 (614)
Q Consensus 98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 177 (614)
+.+++++|.+. .+++.++. +..|+.++..+|++. ..|+ ++..+.+|..+++.+|+++ ..|...-+++.|+
T Consensus 117 ~~l~~s~n~~~---el~~~i~~-~~~l~dl~~~~N~i~----slp~-~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 117 VKLDCSSNELK---ELPDSIGR-LLDLEDLDATNNQIS----SLPE-DMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLK 186 (565)
T ss_pred hhhhcccccee---ecCchHHH-Hhhhhhhhccccccc----cCch-HHHHHHHHHHhhccccchh-hCCHHHHHHHHHH
Confidence 99999999988 78899998 899999999999998 6777 8999999999999999998 4555555599999
Q ss_pred EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeee
Q 042884 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLL 257 (614)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 257 (614)
+||...|.+. .+|.. ++.+.+|+.|++..|++. ..| .|.++..|+++.++.|.+.-..+
T Consensus 187 ~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa---------------- 245 (565)
T KOG0472|consen 187 HLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPA---------------- 245 (565)
T ss_pred hcccchhhhh-cCChh-hcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHH----------------
Confidence 9999999998 89987 899999999999999987 555 68899999999999888754322
Q ss_pred ccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcc
Q 042884 258 LSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNF 337 (614)
Q Consensus 258 l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i 337 (614)
+...+++++.+||+.+|++. ++|+. ..-+++|++||+++|.|++. +.+++.+ .|+.|.+.+|.+
T Consensus 246 ------------e~~~~L~~l~vLDLRdNklk-e~Pde-~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 246 ------------EHLKHLNSLLVLDLRDNKLK-EVPDE-ICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ------------HHhcccccceeeeccccccc-cCchH-HHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCch
Confidence 22347889999999999999 88988 45788999999999999985 4567888 999999999998
Q ss_pred ccCCChhhhhcCC--CccEEE-------ccCCc---CC-CC-Ccc---chhccccCcEEEccCCccCCcCCchhhccCCC
Q 042884 338 QGHIPLEIGDILP--NLISFN-------ISMNA---LD-GS-IPS---SFGNINLLKILDLSNNQLTGEIPEHLAVGCVY 400 (614)
Q Consensus 338 ~~~~~~~~~~~l~--~L~~L~-------L~~n~---l~-~~-~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 400 (614)
. .+-.++...-+ -|++|. ++.-. -+ .. .+. ....+.+.++|++++-+++ .+|+.+|....+
T Consensus 310 r-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~ 387 (565)
T KOG0472|consen 310 R-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS 387 (565)
T ss_pred H-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh
Confidence 6 44433322100 122211 11110 00 00 111 2234567899999999998 999999876553
Q ss_pred --CCEEEccCCcccccc--cC----CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEc
Q 042884 401 --LDFLALSNNSLEGKV--LS----LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 472 (614)
Q Consensus 401 --L~~L~l~~n~l~~~~--~~----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 472 (614)
....+++.|++...+ ++ ..+.+.+++|.+. -+|..++.+++|..|+|++|.+. .+|..++.+..|++|++
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNL 465 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecc
Confidence 778999999987522 11 2344677777776 77888999999999999999998 55777888999999999
Q ss_pred cCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 473 SYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 473 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
|.|++. .+|+....+..++.+-.++|++....|..+..+.++..+++..|....-.|
T Consensus 466 S~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp 522 (565)
T KOG0472|consen 466 SFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP 522 (565)
T ss_pred cccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence 999998 889988888888999899999997777768889999999999997766444
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5.7e-35 Score=301.90 Aligned_cols=470 Identities=25% Similarity=0.307 Sum_probs=250.2
Q ss_pred CccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccC
Q 042884 8 SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVR 87 (614)
Q Consensus 8 ~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 87 (614)
..||..+..-..++.|+++.|-+...+ .+...+.-+|+.||+++|.+. ..|..+..+..|+++.++.|.+. ..|
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p---l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp- 84 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRP---LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP- 84 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCc---hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-
Confidence 345555555555777777777655432 233444555777777777764 55666667777777777766654 345
Q ss_pred CCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC
Q 042884 88 GQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP 167 (614)
Q Consensus 88 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~ 167 (614)
....++++|++|.|.+|.+. ..|..+.. +++|++|++++|.+. .+|. -+..+..++.+..++|.....
T Consensus 85 -~s~~~~~~l~~lnL~~n~l~---~lP~~~~~-lknl~~LdlS~N~f~----~~Pl-~i~~lt~~~~~~~s~N~~~~~-- 152 (1081)
T KOG0618|consen 85 -SSCSNMRNLQYLNLKNNRLQ---SLPASISE-LKNLQYLDLSFNHFG----PIPL-VIEVLTAEEELAASNNEKIQR-- 152 (1081)
T ss_pred -hhhhhhhcchhheeccchhh---cCchhHHh-hhcccccccchhccC----CCch-hHHhhhHHHHHhhhcchhhhh--
Confidence 35677777777777777776 67777777 777777777777776 5555 455555555666665511111
Q ss_pred ccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCC
Q 042884 168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLT 247 (614)
Q Consensus 168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 247 (614)
++... ++.+++..|.+.+.++.+ +..+.. .|+|.+|.+. .. .+..+.+|+.+....|+++....
T Consensus 153 --lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~------ 216 (1081)
T KOG0618|consen 153 --LGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSELEI------ 216 (1081)
T ss_pred --hcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceEEe------
Confidence 11111 555555555555444443 333333 4555555543 11 23444445555555444433211
Q ss_pred CCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCcc
Q 042884 248 TPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRL 327 (614)
Q Consensus 248 ~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 327 (614)
..++++.|+. ..+......+ .....+|+++++++|++. .+|.| ...+.+|+.+...+|.+..+ +..+..+.+|
T Consensus 217 -~g~~l~~L~a-~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l~~l-p~ri~~~~~L 289 (1081)
T KOG0618|consen 217 -SGPSLTALYA-DHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRLVAL-PLRISRITSL 289 (1081)
T ss_pred -cCcchheeee-ccCcceeecc--ccccccceeeecchhhhh-cchHH-HHhcccceEecccchhHHhh-HHHHhhhhhH
Confidence 1113333333 1111111111 112234555555555555 44433 44555555555555555332 2233344455
Q ss_pred CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhcccc-CcEEEccCCccCCcCCchhhccCCCCCEEEc
Q 042884 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINL-LKILDLSNNQLTGEIPEHLAVGCVYLDFLAL 406 (614)
Q Consensus 328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 406 (614)
+.|++..|.+. .+|..... +..|++|+|..|++....+..+.-... |+.|+.+.|.+. ..|..--.....|+.|++
T Consensus 290 ~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 290 VSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYL 366 (1081)
T ss_pred HHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHH
Confidence 55555555554 44443332 455555555555555333333332222 455555555554 344222223444555555
Q ss_pred cCCccccc------ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884 407 SNNSLEGK------VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480 (614)
Q Consensus 407 ~~n~l~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 480 (614)
.+|.+++. ....|+.|+|++|++.......+..++.|++|+||+|+++ .+|.....+..|++|...+|+|. .
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~ 444 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-S 444 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-e
Confidence 55555542 2345666666666666444445566666666666666666 33466666666666666666666 5
Q ss_pred CcccccCCCCCCeEeccCCcCcc-cCCccccccCCcCcccccCCcC
Q 042884 481 IPHQLVELKTLEVFSLAFNNLSG-EIPEWKAQFATFNESSYEGNTF 525 (614)
Q Consensus 481 ~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~~~~~~n~~ 525 (614)
.| .+..++.|+.+|++.|+++. .+|. ...+++|++++++||++
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ch-hhhhcCcceEEecccchhhhhhhhh-hCCCcccceeeccCCcc
Confidence 55 45666667777777776663 2333 33446666677777665
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.4e-34 Score=281.52 Aligned_cols=367 Identities=26% Similarity=0.329 Sum_probs=267.8
Q ss_pred CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCC
Q 042884 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTS 200 (614)
Q Consensus 121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 200 (614)
++-.+-.|+++|.++| ...+.++..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+... ++.++.
T Consensus 6 LpFVrGvDfsgNDFsg---~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSG---DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPR 79 (1255)
T ss_pred cceeecccccCCcCCC---CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchh
Confidence 4555666777777775 444446777777888888777776 67778888888888888888776 55544 677788
Q ss_pred CCEEEcccCcCcc-ccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCc
Q 042884 201 IEELHLSDNHFRI-PISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLE 279 (614)
Q Consensus 201 L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 279 (614)
|+.+.+.+|.+.. .+| ..+..+..|.+||++.|++.. .|..+..-+++-
T Consensus 80 LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~E-----------------------------vP~~LE~AKn~i 129 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLRE-----------------------------VPTNLEYAKNSI 129 (1255)
T ss_pred hHHHhhhccccccCCCC-chhcccccceeeecchhhhhh-----------------------------cchhhhhhcCcE
Confidence 8888888777652 233 346677778888888777643 345555667777
Q ss_pred EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC
Q 042884 280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM 359 (614)
Q Consensus 280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~ 359 (614)
+|+||+|+|. ++|..+|.++..|-.|+|++|++...+| ....+..|++|+|++|.+. ...-.-...+++|++|.+++
T Consensus 130 VLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 130 VLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred EEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccc
Confidence 8888888887 7777777888888888888888776544 4566777888888888764 21111111256677777777
Q ss_pred CcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc-----ccCCccEEEcCCCcCCccC
Q 042884 360 NALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK-----VLSLLSGLDLSCNKLIGHI 433 (614)
Q Consensus 360 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~L~~L~L~~n~l~~~~ 433 (614)
.+-+ .-+|.++..+.+|+.+|+|.|.+. .+|+.++ .+++|+.|+|++|+++.. ...+|+.|+||.|+++ ..
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VL 283 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cc
Confidence 6543 346777788888888888888887 7777774 678888888888887753 2467888888888888 77
Q ss_pred CccccCCCcCCEEECcCCcCC-CCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884 434 PPQIGNLTRIQTLNLSHNNLT-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF 512 (614)
Q Consensus 434 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 512 (614)
|.++..++.|+.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|+.+..+..|+.|.|+.|++. .+|+.+--+
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL 361 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL 361 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence 888888888888888888775 336778888888888888888887 78888888888888888888887 566667777
Q ss_pred CCcCcccccCCcCCCCCCC
Q 042884 513 ATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 513 ~~l~~~~~~~n~~~c~~~~ 531 (614)
+.++.+++..||.+--.|.
T Consensus 362 ~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CCcceeeccCCcCccCCCC
Confidence 8888888888887765443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-33 Score=289.84 Aligned_cols=464 Identities=23% Similarity=0.247 Sum_probs=352.2
Q ss_pred ccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCC
Q 042884 13 SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFP 92 (614)
Q Consensus 13 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~ 92 (614)
++.+.-+|+.||+++|++... .-.+..+++|+.|+++.|.+. ..|.+..++.+++++.+..|... ..|. .+.
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~f----p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~--~~~ 111 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSF----PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA--SIS 111 (1081)
T ss_pred HhhheeeeEEeeccccccccC----CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCch--hHH
Confidence 334445599999999999865 237888999999999999886 56788889999999988877664 5674 689
Q ss_pred CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccC
Q 042884 93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN 172 (614)
Q Consensus 93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 172 (614)
.+++|++|+++.|.+. .+|..+.. ++.++.+..++|.-. . .++... .+.+++..|.+.+.++.....
T Consensus 112 ~lknl~~LdlS~N~f~---~~Pl~i~~-lt~~~~~~~s~N~~~------~--~lg~~~-ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFG---PIPLVIEV-LTAEEELAASNNEKI------Q--RLGQTS-IKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred hhhcccccccchhccC---CCchhHHh-hhHHHHHhhhcchhh------h--hhcccc-chhhhhhhhhcccchhcchhh
Confidence 9999999999999998 78888888 899999999998222 1 233332 888999999999888888888
Q ss_pred CCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc
Q 042884 173 MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ 252 (614)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 252 (614)
++. .|+|.+|.+. .+. +.++++|+.+....|.+. .+. ...++|+.|+.+.|.+..... ...+.+
T Consensus 179 l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~-----~p~p~n 242 (1081)
T KOG0618|consen 179 LTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV-----HPVPLN 242 (1081)
T ss_pred hhe--eeecccchhh-hhh---hhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc-----cccccc
Confidence 777 7999999886 333 678899999999999886 222 244789999999998873322 222348
Q ss_pred ceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEc
Q 042884 253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDV 332 (614)
Q Consensus 253 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 332 (614)
++.++++ .+ ....+|+|+..+.+|+.++..+|.++ .+|.. .....+|+.|.+.+|.+..+++ ...+.++|++|+|
T Consensus 243 l~~~dis-~n-~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~r-i~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 243 LQYLDIS-HN-NLSNLPEWIGACANLEALNANHNRLV-ALPLR-ISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDL 317 (1081)
T ss_pred ceeeecc-hh-hhhcchHHHHhcccceEecccchhHH-hhHHH-HhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeee
Confidence 8899883 33 33567899999999999999999996 78887 4578899999999999998654 4566899999999
Q ss_pred cCCccccCCChhhhhcCCC-ccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcc
Q 042884 333 SNNNFQGHIPLEIGDILPN-LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411 (614)
Q Consensus 333 ~~n~i~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 411 (614)
..|.+. .+|..++..... ++.|+.+.|++.......=...+.|+.|.+.+|.+++..-+ .+.+...|+.|+|++|++
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccccc
Confidence 999997 888877764444 77888888887743322223456788888888888754333 346788888888888877
Q ss_pred cc------cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884 412 EG------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 485 (614)
Q Consensus 412 ~~------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l 485 (614)
.. ..+..|++|+||+|+++ .+|..+..++.|++|...+|.+... | .+..+++|+.+|+|.|+++...-..-
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhh
Confidence 64 33567888899999988 6678888999999999999998844 4 78889999999999999875432222
Q ss_pred cCCCCCCeEeccCCcCcccCCccccccCCcCcccccCC
Q 042884 486 VELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGN 523 (614)
Q Consensus 486 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n 523 (614)
..-++|++||+++|.-.......+..++.+...++.-|
T Consensus 473 ~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 22378999999999854333334444554444444333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5e-33 Score=275.22 Aligned_cols=369 Identities=23% Similarity=0.313 Sum_probs=293.1
Q ss_pred cCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCC
Q 042884 14 MGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFP 92 (614)
Q Consensus 14 ~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~ 92 (614)
.+-+|..+-.|+++|.+++.. +| ....++.++.|.|...++. .+|..++.+.+|++|.+.+|++++-.- .+.
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~---FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---ELs 75 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDR---FPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---ELS 75 (1255)
T ss_pred ccccceeecccccCCcCCCCc---CchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh---hhc
Confidence 356788899999999999654 77 8889999999999998875 789999999999999999999875332 588
Q ss_pred CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccC
Q 042884 93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN 172 (614)
Q Consensus 93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 172 (614)
.++.|+.+.+..|++.. ..+|..++. +..|..|||++|+++ +.|. .+..-+++-.|+|++|+|..+-..-|.+
T Consensus 76 ~Lp~LRsv~~R~N~LKn-sGiP~diF~-l~dLt~lDLShNqL~----EvP~-~LE~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKN-SGIPTDIFR-LKDLTILDLSHNQLR----EVPT-NLEYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred cchhhHHHhhhcccccc-CCCCchhcc-cccceeeecchhhhh----hcch-hhhhhcCcEEEEcccCccccCCchHHHh
Confidence 89999999999998863 378889988 999999999999998 6777 7888889999999999998555566788
Q ss_pred CCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc
Q 042884 173 MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ 252 (614)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 252 (614)
++.|-.||||+|++. .+|+. +..+..|++|+|++|++. ......+..++.|++|.+++.+
T Consensus 149 LtDLLfLDLS~NrLe-~LPPQ-~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~Tq----------------- 208 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLE-MLPPQ-IRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQ----------------- 208 (1255)
T ss_pred hHhHhhhccccchhh-hcCHH-HHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhccccc-----------------
Confidence 999999999999998 88876 788999999999999876 3333445555666666666543
Q ss_pred ceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEc
Q 042884 253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDV 332 (614)
Q Consensus 253 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 332 (614)
.....+|..+..+.+|..+|+|.|.+. .+|.. .-.+++|+.|+|++|+|+... .....-.+|++|++
T Consensus 209 ----------RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-ly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 209 ----------RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC-LYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNL 275 (1255)
T ss_pred ----------chhhcCCCchhhhhhhhhccccccCCC-cchHH-HhhhhhhheeccCcCceeeee-ccHHHHhhhhhhcc
Confidence 222456778888999999999999998 77877 567899999999999998643 23344568889999
Q ss_pred cCCccccCCChhhhhcCCCccEEEccCCcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcc
Q 042884 333 SNNNFQGHIPLEIGDILPNLISFNISMNALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411 (614)
Q Consensus 333 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 411 (614)
|.|+++ .+|..++. ++.|+.|.+.+|+++ .-+|+.++.+.+|+.+..++|.+. -+|+.+ ..|..|+.|.|++|+
T Consensus 276 SrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl-cRC~kL~kL~L~~Nr- 350 (1255)
T KOG0444|consen 276 SRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL-CRCVKLQKLKLDHNR- 350 (1255)
T ss_pred ccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh-hhhHHHHHhcccccc-
Confidence 999998 88988887 889999999999887 347888888999999999999887 778877 355555555544444
Q ss_pred cccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCc
Q 042884 412 EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 452 (614)
Q Consensus 412 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 452 (614)
+. ..|+++.-++.|+.||+..|.
T Consensus 351 -----------------Li-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 351 -----------------LI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -----------------ee-echhhhhhcCCcceeeccCCc
Confidence 33 456666666777777776664
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-27 Score=225.87 Aligned_cols=412 Identities=18% Similarity=0.224 Sum_probs=228.3
Q ss_pred cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
+.+++|..+. +.-..++|..|+|+.+ ++ +|+.+++|+.||||+|+|+...|+.|.++..+.++.+-+++.+..
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~I~~i----P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQISSI----PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CcccCcccCC--CcceEEEeccCCcccC----ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 4567775544 5778999999999998 55 899999999999999999999999999999999999999777778
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccc-
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR- 163 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~- 163 (614)
+|.+ +|+++..|+.|.+.-|.+. .++......+++|..|.+..|.+. .+...+|..+..++.+.+..|.+-
T Consensus 131 l~k~-~F~gL~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn~~q----~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 131 LPKG-AFGGLSSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKIQ----SICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred hhhh-HhhhHHHHHHHhcChhhhc---chhHHHHHHhhhcchhcccchhhh----hhccccccchhccchHhhhcCcccc
Confidence 8874 7999999999999999887 555555544999999999998887 677668888999999999888732
Q ss_pred -----------cccCccccCCCCCcEEEcccCCCCCccCCCCCCCC-CCCCEEEcccCcCccccCcccccCCCCccEEEc
Q 042884 164 -----------GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHL-TSIEELHLSDNHFRIPISLEPLFNHSRLKIFDA 231 (614)
Q Consensus 164 -----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 231 (614)
...|..+++..-..-..+.++++. .++...|... ..+..=-.+.+......|...|..+++|+.+++
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 122333333333333344444443 2332212111 111110111111222334444555555555555
Q ss_pred cCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCC
Q 042884 232 ENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVND 311 (614)
Q Consensus 232 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 311 (614)
++|.++.+.. .+|.....+++|.|..|++. .+...+|.++..|+.|+|.+|
T Consensus 282 snN~i~~i~~----------------------------~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 282 SNNKITRIED----------------------------GAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred CCCccchhhh----------------------------hhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCC
Confidence 5555443322 22333344444455555444 333344445555555555555
Q ss_pred CCCCCCCCCCCCCCccCEEEccCCccccCCC-hhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCC--
Q 042884 312 SLAGPFRLPIHSHKRLRQLDVSNNNFQGHIP-LEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTG-- 388 (614)
Q Consensus 312 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 388 (614)
+|+.+.+.+|..+.+|.+|.+-.|.+--.-- .++..++. ++...+..| -+.-..++.+.+++..+..
T Consensus 333 ~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr--------~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~ 402 (498)
T KOG4237|consen 333 QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR--------KKSVVGNPR--CQSPGFVRQIPISDVAFGDFR 402 (498)
T ss_pred eeEEEecccccccceeeeeehccCcccCccchHHHHHHHh--------hCCCCCCCC--CCCCchhccccchhccccccc
Confidence 5555445555555555555544444321100 01111111 011011110 1112235555665554321
Q ss_pred -cCCchhh--------ccCCCCCEEEc-cCCccc---ccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCC
Q 042884 389 -EIPEHLA--------VGCVYLDFLAL-SNNSLE---GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 455 (614)
Q Consensus 389 -~~~~~~~--------~~~~~L~~L~l-~~n~l~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 455 (614)
..|++.- +.++.+.+..= ++..+. ...|....+|++.+|.++ .+|+. .+.+| .+|+++|++..
T Consensus 403 c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 403 CGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred cCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 1122110 11222222211 111111 123444556666666666 34443 44555 66666666665
Q ss_pred CCCcCCCCCCCCCEEEccCC
Q 042884 456 LIPSTFSNLKHIESLDLSYN 475 (614)
Q Consensus 456 ~~~~~~~~l~~L~~L~ls~N 475 (614)
.....|.++++|.+|-+++|
T Consensus 479 Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 479 LSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcccccchhhhheeEEecC
Confidence 55566666666666666654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-27 Score=221.97 Aligned_cols=253 Identities=20% Similarity=0.220 Sum_probs=219.5
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccC-CccccCCChhhhhcCCCccE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN-NNFQGHIPLEIGDILPNLIS 354 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~ 354 (614)
+.-..++|..|+|+ .+|...|+.+++|+.|+|++|.|+.+.+.+|.+++++.+|-+.+ |+|+ .+|...|.++..++.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 35678999999998 88888899999999999999999999999999999998887766 8998 899999999999999
Q ss_pred EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc---------------------
Q 042884 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--------------------- 413 (614)
Q Consensus 355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------- 413 (614)
|.+.-|++.-...+.|..+++|..|.+.+|.+. .++...|..+.+++.+.+..|.+..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 999999999888999999999999999999998 8899888999999999988887421
Q ss_pred --cc-----------------cCCccEE--Ec-CCCcCCccCC-ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884 414 --KV-----------------LSLLSGL--DL-SCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 470 (614)
Q Consensus 414 --~~-----------------~~~L~~L--~L-~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 470 (614)
.. ..+++.+ .+ +.+...++.| ..|..+++|++|+|++|+++.+.+.+|.++.++++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 00 0112222 12 2222222333 569999999999999999999999999999999999
Q ss_pred EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
+|..|+|..+....|.++..|+.|+|.+|+|++..|..|.....+..+.+-+|||.|+|.+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 9999999988888999999999999999999999999999999999999999999999976
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.8e-22 Score=230.68 Aligned_cols=338 Identities=21% Similarity=0.228 Sum_probs=208.3
Q ss_pred CCCCCCCCCEEeCcCcccCC----CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884 90 GFPHFKSLEHLNMERARIAP----NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS 165 (614)
Q Consensus 90 ~~~~l~~L~~L~l~~n~l~~----~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~ 165 (614)
+|.++++|+.|.+..+.... ...+|..+....++|+.|.+.++.+. .+|. .| ...+|+.|++.+|++. .
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~----~lP~-~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR----CMPS-NF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC----CCCC-cC-CccCCcEEECcCcccc-c
Confidence 46666666666665443210 01344444442235666666666655 4444 33 3456666667666665 4
Q ss_pred cCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccccccccccc
Q 042884 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYS 245 (614)
Q Consensus 166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 245 (614)
++..+..+++|+.|+|+++...+.+|. +..+++|++|++++|.....+| ..+..+++|+.|++++|..
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~--------- 693 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCEN--------- 693 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCC---------
Confidence 555566666667777666543335554 5566666666666665443444 3455666666666665432
Q ss_pred CCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCC
Q 042884 246 LTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHK 325 (614)
Q Consensus 246 ~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 325 (614)
...+|..+ .+++|+.|++++|...+.+|. ...+|++|++++|.+..++. .+ .++
T Consensus 694 -------------------L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~-~~-~l~ 747 (1153)
T PLN03210 694 -------------------LEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPS-NL-RLE 747 (1153)
T ss_pred -------------------cCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccc-cc-ccc
Confidence 12233322 456667777776654444443 23466677777776655332 22 456
Q ss_pred ccCEEEccCCccc------cCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC
Q 042884 326 RLRQLDVSNNNFQ------GHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV 399 (614)
Q Consensus 326 ~L~~L~l~~n~i~------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 399 (614)
+|+.|++.++... ..++...+...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~ 825 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLE 825 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--Ccc
Confidence 6666666553221 01122222335688888888887777788888888889999988875444777765 678
Q ss_pred CCCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCC-cCCCCCCcCCCCCCCCCEEEccCC
Q 042884 400 YLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN-NLTGLIPSTFSNLKHIESLDLSYN 475 (614)
Q Consensus 400 ~L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~N 475 (614)
+|+.|++++|.... ..+.+++.|+|++|.++ .+|..+..+++|+.|++++| ++. .+|..+..+++|+.+++++|
T Consensus 826 sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence 88888888875432 23467888888888887 56777888888888888885 444 45666777888888888887
Q ss_pred c
Q 042884 476 K 476 (614)
Q Consensus 476 ~ 476 (614)
.
T Consensus 904 ~ 904 (1153)
T PLN03210 904 G 904 (1153)
T ss_pred c
Confidence 5
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2e-21 Score=224.63 Aligned_cols=333 Identities=20% Similarity=0.196 Sum_probs=222.4
Q ss_pred hhcCCCCCCeEECcCCc------cccccCccccCCC-CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCc
Q 042884 145 GLCSLMHLQELYKVNND------LRGSLPWCVANMT-SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISL 217 (614)
Q Consensus 145 ~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 217 (614)
+|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|.. | ...+|++|++.+|.+. .++
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~-f-~~~~L~~L~L~~s~l~-~L~- 627 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN-F-RPENLVKLQMQGSKLE-KLW- 627 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc-C-CccCCcEEECcCcccc-ccc-
Confidence 45555555555554332 1122344444432 4555555555554 45543 2 3455555555555544 222
Q ss_pred ccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHH
Q 042884 218 EPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL 297 (614)
Q Consensus 218 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 297 (614)
..+..+++|+.++++++......+. .....+|+.|++ .++.....+|..+..+++|+.|++++|...+.+|..+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L-~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKL-SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEe-cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 2234455555555554432222211 112235666666 4444445678888899999999999986555788753
Q ss_pred hcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCC-------CCCccch
Q 042884 298 ENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD-------GSIPSSF 370 (614)
Q Consensus 298 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~ 370 (614)
.+++|+.|++++|......+. ...+|+.|++++|.+. .+|... .+++|+.|.+.++... ...+..+
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred -CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhh
Confidence 789999999999875544332 2468999999999997 788655 3788999998875422 1222333
Q ss_pred hccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-----cccCCccEEEcCCCcCCccCCccccCCCcCCE
Q 042884 371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT 445 (614)
Q Consensus 371 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 445 (614)
...++|+.|++++|...+.+|..+ .++++|+.|++++|..-+ ..+++|+.|++++|.....+|.. .++|++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred hccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCE
Confidence 446789999999998776888875 789999999999975322 23678999999998765455543 368999
Q ss_pred EECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCc
Q 042884 446 LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500 (614)
Q Consensus 446 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~ 500 (614)
|+|++|.++ .+|..+..+++|+.|++++|.-...+|..+..++.|+.+++++|.
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999998 467789999999999999954434677778889999999999985
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.1e-21 Score=208.34 Aligned_cols=265 Identities=25% Similarity=0.277 Sum_probs=152.3
Q ss_pred CCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEE
Q 042884 150 MHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229 (614)
Q Consensus 150 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 229 (614)
.+-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|.++ .+|. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccC----ccccccee
Confidence 34556677777666 4555553 35667777777666 5553 2456667777666665 3331 12455666
Q ss_pred EccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884 230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV 309 (614)
Q Consensus 230 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 309 (614)
++++|.+... |. ..++|+.|++++|++. .+|. ..++|+.|+++
T Consensus 268 ~Ls~N~L~~L-----------------------------p~---lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS 310 (788)
T PRK15387 268 SIFSNPLTHL-----------------------------PA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVS 310 (788)
T ss_pred eccCCchhhh-----------------------------hh---chhhcCEEECcCCccc-cccc----cccccceeECC
Confidence 6666554322 11 1134566666666665 4443 23556666666
Q ss_pred CCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCc
Q 042884 310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE 389 (614)
Q Consensus 310 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 389 (614)
+|++.+++.. ..+|+.|++++|.++ .+|.. ..+|+.|+|++|++++ +|.. ..+|+.|++++|++. .
T Consensus 311 ~N~L~~Lp~l----p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~ 376 (788)
T PRK15387 311 DNQLASLPAL----PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-S 376 (788)
T ss_pred CCccccCCCC----cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-c
Confidence 6666654321 234666666666665 45531 2456666666666663 2322 245566666666665 4
Q ss_pred CCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCE
Q 042884 390 IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469 (614)
Q Consensus 390 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 469 (614)
+|.. +.+|+.|++++|++++ +|.. .++|+.|++++|+++++ |.. ..+|+.
T Consensus 377 LP~l----------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l---~~~L~~ 426 (788)
T PRK15387 377 LPAL----------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML---PSGLLS 426 (788)
T ss_pred Cccc----------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc---hhhhhh
Confidence 5431 2345555566666553 3322 24677777777777653 432 235677
Q ss_pred EEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccc
Q 042884 470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWK 509 (614)
Q Consensus 470 L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 509 (614)
|++++|+|+ .+|..+..++.|+.|++++|++++..+..+
T Consensus 427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 777777777 567777777777777777777776655433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=6.3e-21 Score=204.76 Aligned_cols=265 Identities=27% Similarity=0.321 Sum_probs=182.5
Q ss_pred CCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCC
Q 042884 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSI 201 (614)
Q Consensus 122 ~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 201 (614)
..-..|+++.+.++ .+|+ .+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++ .+|.. .++|
T Consensus 201 ~~~~~LdLs~~~Lt----sLP~-~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL 264 (788)
T PRK15387 201 NGNAVLNVGESGLT----TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGL 264 (788)
T ss_pred CCCcEEEcCCCCCC----cCCc-chh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----cccc
Confidence 34668899999887 6776 454 47899999999998 4564 3578999999999998 67752 4688
Q ss_pred CEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEE
Q 042884 202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYV 281 (614)
Q Consensus 202 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 281 (614)
+.|++++|.+. .++. ....|+.|++++|++... |. ..++|+.|
T Consensus 265 ~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~L-----------------------------P~---~p~~L~~L 307 (788)
T PRK15387 265 LELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSL-----------------------------PV---LPPGLQEL 307 (788)
T ss_pred ceeeccCCchh-hhhh----chhhcCEEECcCCccccc-----------------------------cc---ccccccee
Confidence 99999999887 3332 225688888888877532 11 13578888
Q ss_pred EccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc
Q 042884 282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361 (614)
Q Consensus 282 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 361 (614)
++++|++. .+|.. ...|+.|++++|.+.+++.. ..+|+.|++++|+++ .+|.. .++|+.|++++|+
T Consensus 308 dLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~ 373 (788)
T PRK15387 308 SVSDNQLA-SLPAL----PSELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR 373 (788)
T ss_pred ECCCCccc-cCCCC----cccccccccccCcccccccc----ccccceEecCCCccC-CCCCC----Ccccceehhhccc
Confidence 88888887 45542 24577888888888765431 247889999999987 66642 4578888999998
Q ss_pred CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCC
Q 042884 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 441 (614)
Q Consensus 362 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 441 (614)
++. +|.. ..+|+.|++++|+++ .+|.. ++.|+.|++++|+++. +|.. ..
T Consensus 374 L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l----------------------~s~L~~LdLS~N~Lss-IP~l---~~ 422 (788)
T PRK15387 374 LTS-LPAL---PSGLKELIVSGNRLT-SLPVL----------------------PSELKELMVSGNRLTS-LPML---PS 422 (788)
T ss_pred ccc-Cccc---ccccceEEecCCccc-CCCCc----------------------ccCCCEEEccCCcCCC-CCcc---hh
Confidence 884 4543 357889999999887 56642 2234445555555542 3332 23
Q ss_pred cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 485 (614)
Q Consensus 442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l 485 (614)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5666777777776 345666667777777777777776655554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.5e-18 Score=187.77 Aligned_cols=257 Identities=21% Similarity=0.336 Sum_probs=153.5
Q ss_pred CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCC
Q 042884 96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS 175 (614)
Q Consensus 96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 175 (614)
+...|+++++.++ .+|..+ .++|+.|++++|.++ .+|. .+. ++|+.|++++|+++ .+|..+. .+
T Consensus 179 ~~~~L~L~~~~Lt---sLP~~I---p~~L~~L~Ls~N~Lt----sLP~-~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~ 242 (754)
T PRK15370 179 NKTELRLKILGLT---TIPACI---PEQITTLILDNNELK----SLPE-NLQ--GNIKTLYANSNQLT-SIPATLP--DT 242 (754)
T ss_pred CceEEEeCCCCcC---cCCccc---ccCCcEEEecCCCCC----cCCh-hhc--cCCCEEECCCCccc-cCChhhh--cc
Confidence 4566666666665 455543 245667777777666 4554 222 36677777777666 3454432 35
Q ss_pred CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884 176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255 (614)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 255 (614)
|+.|+|++|.+. .+|... ..+|+.|++++|.+. .+|. .+. .+|+.|++++|.+...
T Consensus 243 L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~L---------------- 298 (754)
T PRK15370 243 IQEMELSINRIT-ELPERL---PSALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRTL---------------- 298 (754)
T ss_pred ccEEECcCCccC-cCChhH---hCCCCEEECcCCccC-cccc-ccC--CCCcEEECCCCccccC----------------
Confidence 677777777766 566532 245667777766665 3332 121 3566666666655432
Q ss_pred eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC
Q 042884 256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 335 (614)
Q Consensus 256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 335 (614)
|..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.++.++. .+ .++|+.|++++|
T Consensus 299 -------------P~~l--p~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N 356 (754)
T PRK15370 299 -------------PAHL--PSGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKN 356 (754)
T ss_pred -------------cccc--hhhHHHHHhcCCccc-cCCccc---cccceeccccCCccccCCh-hh--cCcccEEECCCC
Confidence 2111 135677777777776 455432 2567777787777776432 22 257888888888
Q ss_pred ccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchh---hccCCCCCEEEccCCccc
Q 042884 336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL---AVGCVYLDFLALSNNSLE 412 (614)
Q Consensus 336 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~ 412 (614)
.++ .+|..+ .++|+.|++++|.++. +|..+. .+|+.|++++|++. .+|..+ ...++.+..+++.+|+++
T Consensus 357 ~L~-~LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 357 QIT-VLPETL---PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCC-cCChhh---cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 876 666544 3578888888888874 444443 36778888888887 666643 223455666666666665
Q ss_pred ccccCCccEE
Q 042884 413 GKVLSLLSGL 422 (614)
Q Consensus 413 ~~~~~~L~~L 422 (614)
...+..|+.|
T Consensus 429 ~~tl~~L~~L 438 (754)
T PRK15370 429 ERTIQNMQRL 438 (754)
T ss_pred HHHHHHHHHh
Confidence 5444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.5e-18 Score=186.14 Aligned_cols=102 Identities=25% Similarity=0.447 Sum_probs=50.3
Q ss_pred CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 356 (614)
+|+.|++++|.+. .+|..+. .+|+.|++++|++..++. .+ .++|+.|++++|.++ .+|..+ .++|+.|+
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~-~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~ 310 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISCLPE-NL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLN 310 (754)
T ss_pred cccEEECcCCccC-cCChhHh---CCCCEEECcCCccCcccc-cc--CCCCcEEECCCCccc-cCcccc---hhhHHHHH
Confidence 4555555555555 4454321 345555555555554322 12 135566666666655 444332 13455566
Q ss_pred ccCCcCCCCCccchhccccCcEEEccCCccCCcCCch
Q 042884 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH 393 (614)
Q Consensus 357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 393 (614)
+++|.++. +|..+ .++|+.|++++|.++ .+|..
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~ 343 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPAS 343 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCccc-cCChh
Confidence 66666553 23222 245666666666665 45543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.1e-18 Score=175.86 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=48.7
Q ss_pred cccCCCcCCEEECcCCcCCCCCCcCC-----CCCCCCCEEEccCCcCCC----CCcccccCCCCCCeEeccCCcCccc--
Q 042884 436 QIGNLTRIQTLNLSHNNLTGLIPSTF-----SNLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSLAFNNLSGE-- 504 (614)
Q Consensus 436 ~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~-- 504 (614)
.+..+++|++|++++|.+++.....+ ...+.|++|++++|.++. .+.+.+..+++|+++++++|+++..
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 34455666666666666653211111 123567777777776651 2233444556677777777777632
Q ss_pred --CCcccccc-CCcCcccccCCcC
Q 042884 505 --IPEWKAQF-ATFNESSYEGNTF 525 (614)
Q Consensus 505 --~~~~~~~~-~~l~~~~~~~n~~ 525 (614)
....+..+ ..++.+++.+|||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCCC
Confidence 22223333 4566666666664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.7e-18 Score=174.49 Aligned_cols=246 Identities=25% Similarity=0.266 Sum_probs=116.8
Q ss_pred cceeeeccCCCCCCC----CCCccccCCCCCcEEEccCCCCCC------CCChhHHhcCCCccEEEccCCCCCCCCCCCC
Q 042884 252 QLQYLLLSSGYGDGA----TFPKFLYHQHDLEYVDLSHTKMNG------EFPNWLLENNTKLKTLFLVNDSLAGPFRLPI 321 (614)
Q Consensus 252 ~L~~L~l~~~~~~~~----~~p~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 321 (614)
.|+++++ .++.... .++..+...++++.++++++.+.+ .++. .+..+++|++|++++|.+....+..+
T Consensus 24 ~L~~l~l-~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 24 CLQVLRL-EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hccEEee-cCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCCChhHHHHH
Confidence 3666666 3333221 233344455556666666665541 0111 23445566666666666553333333
Q ss_pred CCCC---ccCEEEccCCccccCCC----hhhhhcC-CCccEEEccCCcCCCC----CccchhccccCcEEEccCCccCCc
Q 042884 322 HSHK---RLRQLDVSNNNFQGHIP----LEIGDIL-PNLISFNISMNALDGS----IPSSFGNINLLKILDLSNNQLTGE 389 (614)
Q Consensus 322 ~~l~---~L~~L~l~~n~i~~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 389 (614)
..+. +|++|++++|++++... ..+.. + ++|+.|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHh-CCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 2222 26666666665542111 11111 3 5566666666665522 223344455566666666665532
Q ss_pred CCchh---hccCCCCCEEEccCCcccc----------cccCCccEEEcCCCcCCccCCcccc-----CCCcCCEEECcCC
Q 042884 390 IPEHL---AVGCVYLDFLALSNNSLEG----------KVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHN 451 (614)
Q Consensus 390 ~~~~~---~~~~~~L~~L~l~~n~l~~----------~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n 451 (614)
....+ +..+++|+.|++++|.+++ ...++|++|++++|.+++.....+. ..+.|++|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 21111 1233466666666665542 1234566666666665532221111 1255666666666
Q ss_pred cCCCC----CCcCCCCCCCCCEEEccCCcCCCC----CcccccCC-CCCCeEeccCCc
Q 042884 452 NLTGL----IPSTFSNLKHIESLDLSYNKLNGK----IPHQLVEL-KTLEVFSLAFNN 500 (614)
Q Consensus 452 ~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~----~~~~l~~l-~~L~~L~l~~N~ 500 (614)
.++.. ....+..+++|+.+++++|.+... ....+... +.|+++++.+|+
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 65411 112334445666666666666533 22223333 456666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.6e-18 Score=143.49 Aligned_cols=179 Identities=25% Similarity=0.425 Sum_probs=102.1
Q ss_pred CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884 324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF 403 (614)
Q Consensus 324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 403 (614)
+..++.|.+++|.++ .+|+.+.. +.+|+.|++++|+++ ..|..++.++.|+.|+++-|++. ..|..+ ..++.|+.
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhh
Confidence 344555556666665 55555555 556666666666665 44555666666666666666655 555554 33333333
Q ss_pred EEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcc
Q 042884 404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 483 (614)
Q Consensus 404 L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 483 (614)
||+.+|++.. ...|+.|..+..|+.|+|++|.+. ..|...+.+++|+.|.+.+|.+. ..|.
T Consensus 107 ldltynnl~e-----------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 107 LDLTYNNLNE-----------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred hhcccccccc-----------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence 3333333221 134555666666677777777665 45556667777777777777666 5666
Q ss_pred cccCCCCCCeEeccCCcCcccCCccccccCC---cCcccccCCcCCC
Q 042884 484 QLVELKTLEVFSLAFNNLSGEIPEWKAQFAT---FNESSYEGNTFLC 527 (614)
Q Consensus 484 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---l~~~~~~~n~~~c 527 (614)
.++.+..|+.|.+.+|+++-..|+ +..+.- -+...++.|||.-
T Consensus 168 eig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 666777777777777777644443 333321 1234456666654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-17 Score=139.93 Aligned_cols=168 Identities=27% Similarity=0.272 Sum_probs=112.5
Q ss_pred CCccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCcc
Q 042884 7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVV 86 (614)
Q Consensus 7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~ 86 (614)
+.++| .+-.+++.+.|.||+|.++.+ .|.+..+.+|+.|++++|++. .+|.+++.++.++.+.+.-|.+. ..|
T Consensus 23 f~~~~-gLf~~s~ITrLtLSHNKl~~v----ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lp 95 (264)
T KOG0617|consen 23 FEELP-GLFNMSNITRLTLSHNKLTVV----PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILP 95 (264)
T ss_pred Hhhcc-cccchhhhhhhhcccCceeec----CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCc
Confidence 33444 345567788888888888877 567888888888888888876 56777777777777777666553 345
Q ss_pred CCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc
Q 042884 87 RGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL 166 (614)
Q Consensus 87 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (614)
. .|+.++.|+.||+.+|.+.. ..+|..++. ++.|+.|.++.|.+. .+|+ .++++++|+.|.+..|.+- ..
T Consensus 96 r--gfgs~p~levldltynnl~e-~~lpgnff~-m~tlralyl~dndfe----~lp~-dvg~lt~lqil~lrdndll-~l 165 (264)
T KOG0617|consen 96 R--GFGSFPALEVLDLTYNNLNE-NSLPGNFFY-MTTLRALYLGDNDFE----ILPP-DVGKLTNLQILSLRDNDLL-SL 165 (264)
T ss_pred c--ccCCCchhhhhhcccccccc-ccCCcchhH-HHHHHHHHhcCCCcc----cCCh-hhhhhcceeEEeeccCchh-hC
Confidence 3 57777777777777776653 245555555 666666666666664 3444 6666667777777666665 56
Q ss_pred CccccCCCCCcEEEcccCCCCCccCC
Q 042884 167 PWCVANMTSLRILDVSSNQLTGSIAS 192 (614)
Q Consensus 167 ~~~~~~l~~L~~L~L~~n~l~~~~~~ 192 (614)
|..++.++.|++|++.+|+++ .+|.
T Consensus 166 pkeig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred cHHHHHHHHHHHHhcccceee-ecCh
Confidence 666666666666666666666 5554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=7e-14 Score=151.28 Aligned_cols=117 Identities=37% Similarity=0.640 Sum_probs=106.6
Q ss_pred CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497 (614)
Q Consensus 418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~ 497 (614)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCcccccc-CCcCcccccCCcCCCCCCC-CCC
Q 042884 498 FNNLSGEIPEWKAQF-ATFNESSYEGNTFLCGLPL-PIC 534 (614)
Q Consensus 498 ~N~l~~~~~~~~~~~-~~l~~~~~~~n~~~c~~~~-~~c 534 (614)
+|++++.+|..+... ..+..+++.+|+..|++|. ..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 999999999876653 4566788999999998764 356
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=2.3e-13 Score=135.52 Aligned_cols=188 Identities=31% Similarity=0.461 Sum_probs=143.1
Q ss_pred CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884 324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF 403 (614)
Q Consensus 324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 403 (614)
+.--...|++.|++. .+|..+.. +..|+.+.|..|.+. .+|..+..+..|+++|++.|+++ .+|..++ .--|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence 344456777888887 77777766 677888888888777 66777888888888888888887 7777764 234777
Q ss_pred EEccCCccccc-----ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884 404 LALSNNSLEGK-----VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478 (614)
Q Consensus 404 L~l~~n~l~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 478 (614)
|-+++|+++.. ....|..||.+.|++. ..|..++++.+|+.|++..|++...+ ..+..| .|..||+|+|+++
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp-~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP-EELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC-HHHhCC-ceeeeecccCcee
Confidence 88888877642 3567888899999988 66778999999999999999998654 445555 5899999999999
Q ss_pred CCCcccccCCCCCCeEeccCCcCcccCCccccccC---CcCcccccC
Q 042884 479 GKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA---TFNESSYEG 522 (614)
Q Consensus 479 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~---~l~~~~~~~ 522 (614)
.+|-.|..|..|++|-|.+|+++ ..|+.++... -+++++.+.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchh
Confidence 89999999999999999999999 4555444322 344444433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=3.7e-13 Score=134.02 Aligned_cols=195 Identities=28% Similarity=0.441 Sum_probs=153.6
Q ss_pred CCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884 275 QHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354 (614)
Q Consensus 275 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~ 354 (614)
+..-...|++.|++. ++|.. +..+..|+.+.+..|.+.. .+.++..+..|+.+|++.|+++ .+|..++. ++ |+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lp-Lkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LP-LKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchH-HHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhc-Cc-cee
Confidence 445567899999998 78877 5677788889999998886 4567888999999999999998 88988886 44 999
Q ss_pred EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP 434 (614)
Q Consensus 355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~ 434 (614)
|.+++|+++ .+|..++....|..||.+.|.+. .+|..+ .++.+|+.| .+..|++. ..|
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql-~~l~slr~l------------------~vrRn~l~-~lp 205 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL-GYLTSLRDL------------------NVRRNHLE-DLP 205 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh-hhHHHHHHH------------------HHhhhhhh-hCC
Confidence 999999998 66777888899999999999998 788876 345555444 44455555 556
Q ss_pred ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC---CCCCeEeccCCc
Q 042884 435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL---KTLEVFSLAFNN 500 (614)
Q Consensus 435 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l---~~L~~L~l~~N~ 500 (614)
..+..+ .|..||+|.|+++ .+|-.|..++.|++|-|.+|.++ ..|..+... .=.++|+..-++
T Consensus 206 ~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 206 EELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 666644 5899999999998 67889999999999999999998 667665432 234677777774
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.8e-12 Score=120.36 Aligned_cols=207 Identities=28% Similarity=0.333 Sum_probs=152.9
Q ss_pred hcCCCccEEEccCCCCCCCCC-CCCCCCCccCEEEccCCccccCCC-hhhhhcCCCccEEEccCCcCCCCCcc-chhccc
Q 042884 298 ENNTKLKTLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNFQGHIP-LEIGDILPNLISFNISMNALDGSIPS-SFGNIN 374 (614)
Q Consensus 298 ~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~ 374 (614)
+++.+|+++.|++..+..... .....+++++.||+++|-+....+ ..+...+|+|+.|+|+.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467789999999988875433 345678999999999998873322 24455699999999999998633222 123578
Q ss_pred cCcEEEccCCccCCcCCchhhccCCCCCEEEccCCc-cc-----ccccCCccEEEcCCCcCCccC-CccccCCCcCCEEE
Q 042884 375 LLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS-LE-----GKVLSLLSGLDLSCNKLIGHI-PPQIGNLTRIQTLN 447 (614)
Q Consensus 375 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~-----~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 447 (614)
.|+.|.++.|.++-.--..+...+++|+.|++..|. +. ...+..|++|||++|++.... ....+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 899999999998743344556789999999999994 22 245788999999999987432 13467889999999
Q ss_pred CcCCcCCCCCCcC------CCCCCCCCEEEccCCcCCCCC-cccccCCCCCCeEeccCCcCccc
Q 042884 448 LSHNNLTGLIPST------FSNLKHIESLDLSYNKLNGKI-PHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 448 L~~n~l~~~~~~~------~~~l~~L~~L~ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
++.+.+..+.-.. ...+++|+.|+++.|+|...- -..+..+++|+.|.+..|.++..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 9999887553222 356789999999999996321 12355577888899999998743
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=7.5e-11 Score=122.28 Aligned_cols=198 Identities=33% Similarity=0.526 Sum_probs=123.0
Q ss_pred EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCC-CccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884 280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358 (614)
Q Consensus 280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~ 358 (614)
.++++.+.+...... ....+.++.|++.+|.+..+.+. ...+ ++|+.|++++|.+. .+|..... +++|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchh--hhcccceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhc-cccccccccC
Confidence 567777766423322 33456777888888877765443 2233 27888888888876 66544544 7788888888
Q ss_pred CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcccc
Q 042884 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIG 438 (614)
Q Consensus 359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~ 438 (614)
+|+++ .+|......++|+.|++++|+++ .+|..+ .. +..|+++.+++|++. ..+..+.
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~------------------~~~L~~l~~~~N~~~-~~~~~~~ 229 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI-EL------------------LSALEELDLSNNSII-ELLSSLS 229 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhh-hh------------------hhhhhhhhhcCCcce-ecchhhh
Confidence 88877 33444446777888888888877 666653 12 233444444544322 3344566
Q ss_pred CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507 (614)
Q Consensus 439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 507 (614)
.+.++..+.+.+|++... +..++.+++++.|++++|+++.+.+ +..+.+++.|++++|.+....|.
T Consensus 230 ~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 230 NLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 666666666767766532 4556666667777777777764333 66667777777777776655444
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=3.8e-12 Score=119.90 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCCCCCCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCch---------hhcCCCCCCeEECc
Q 042884 90 GFPHFKSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDR---------GLCSLMHLQELYKV 158 (614)
Q Consensus 90 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~---------~~~~l~~L~~L~L~ 158 (614)
++..+++|++++||+|.+.. ...+-+.+.. +..|+.|.|.+|.+.......... ....-++|+++..+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s-~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSS-CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHh-ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 45566788888888887753 1111222333 777888888887775322121111 12233455666665
Q ss_pred CCcccccc----CccccCCCCCcEEEcccCCCC
Q 042884 159 NNDLRGSL----PWCVANMTSLRILDVSSNQLT 187 (614)
Q Consensus 159 ~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~ 187 (614)
+|++.... ...|...+.|+.+.++.|.|.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEeccccc
Confidence 55554321 223444455555555555543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.6e-11 Score=116.52 Aligned_cols=221 Identities=24% Similarity=0.178 Sum_probs=149.0
Q ss_pred CccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCcc--chHHHhhccCCcEEeccCccccCCc
Q 042884 8 SKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHIS--LLQSIASLFPSLKNLSMSYCEVNGV 85 (614)
Q Consensus 8 ~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~l~~l~l~~~~~~~~~ 85 (614)
.++...=.++.+|+.+.|.++.+...+.. .....|++++.||||.|-+..- +......+++|+.|.+++|.+....
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HHHHHHhhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 34444446788899999999887755311 2567789999999999977642 2234567889999999999876433
Q ss_pred cCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884 86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS 165 (614)
Q Consensus 86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~ 165 (614)
.. ..-..+++|+.|.++.|.++. .-...+...+|+|+.|+|.+|... .+.......+..|+.|||++|.+.+
T Consensus 189 ~s-~~~~~l~~lK~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~- 260 (505)
T KOG3207|consen 189 SS-NTTLLLSHLKQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLID- 260 (505)
T ss_pred cc-cchhhhhhhheEEeccCCCCH--HHHHHHHHhCCcHHHhhhhccccc----ceecchhhhhhHHhhccccCCcccc-
Confidence 22 223367888999999998874 222333333899999999888422 2222244567788999999988763
Q ss_pred cC--ccccCCCCCcEEEcccCCCCCccCCCC------CCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccc
Q 042884 166 LP--WCVANMTSLRILDVSSNQLTGSIASSP------LAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN 237 (614)
Q Consensus 166 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 237 (614)
.+ .....++.|+.|+++.+.+. .+.... ...+++|+.|++..|++..--....+..+++|+.|.+..|.+.
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 33 34567888888999888887 433211 2567888999999888752222334556667777777777765
Q ss_pred cc
Q 042884 238 AE 239 (614)
Q Consensus 238 ~~ 239 (614)
..
T Consensus 340 ~e 341 (505)
T KOG3207|consen 340 KE 341 (505)
T ss_pred cc
Confidence 44
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.9e-11 Score=112.53 Aligned_cols=130 Identities=31% Similarity=0.334 Sum_probs=75.5
Q ss_pred CCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884 350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL 429 (614)
Q Consensus 350 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l 429 (614)
..|+++||++|.|+ .+.++..-.+.++.|+++.|.+. .+.. + ..+++|+.||||+|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-------------------a~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-------------------AELPQLQLLDLSGNLL 341 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-------------------hhcccceEeecccchh
Confidence 34555555555554 33344444555555555555554 2222 1 1245555566666655
Q ss_pred CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCc-ccccCCCCCCeEeccCCcCccc
Q 042884 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
+ .+.++-..+.+.+.|.|+.|.+... ..++.+-+|..||+++|+|..... ..++++|.|+.+.|.+|++.+.
T Consensus 342 s-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 342 A-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred H-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 5 3334445566777777777777544 456667777777777777763221 3466777777777777777743
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.9e-10 Score=102.02 Aligned_cols=107 Identities=25% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCCCcEEEccCCCCCCCCChhHHh-cCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 275 QHDLEYVDLSHTKMNGEFPNWLLE-NNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 275 l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
...+++|+|.+|.|+ .+.. ++ .+.+|+.|++++|.|+.+. .+..++.|+.|++++|+|+ .++..+...+++|+
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccc-cccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 345566666666665 3322 22 3456666666666666533 3445566666666666665 44443333356666
Q ss_pred EEEccCCcCCCC-CccchhccccCcEEEccCCccC
Q 042884 354 SFNISMNALDGS-IPSSFGNINLLKILDLSNNQLT 387 (614)
Q Consensus 354 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 387 (614)
+|++++|+|... .-..+..+++|+.|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666665432 1134445555666666666554
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=4.5e-11 Score=105.95 Aligned_cols=131 Identities=24% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccc
Q 042884 91 FPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV 170 (614)
Q Consensus 91 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 170 (614)
+.+..++++|+|.+|.++ .+ +.++..+.+|+.|++++|.++ .+. ++..+++|++|++++|+|+.. .+.+
T Consensus 15 ~~n~~~~~~L~L~~n~I~---~I-e~L~~~l~~L~~L~Ls~N~I~----~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS---TI-ENLGATLDKLEVLDLSNNQIT----KLE--GLPGLPRLKTLDLSNNRISSI-SEGL 83 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S------T--T----TT--EEE--SS---S--CHHH
T ss_pred cccccccccccccccccc---cc-cchhhhhcCCCEEECCCCCCc----ccc--CccChhhhhhcccCCCCCCcc-ccch
Confidence 555667889999999886 33 445533788999999999987 444 477889999999999999854 3444
Q ss_pred -cCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccC--cccccCCCCccEEEcc
Q 042884 171 -ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS--LEPLFNHSRLKIFDAE 232 (614)
Q Consensus 171 -~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~ 232 (614)
..+++|++|++++|+|.+.-.-..+..+++|+.|++.+|++...-. ...+..+++|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 4688999999999998733222446788999999999998862211 1225577888888764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=5.6e-11 Score=109.53 Aligned_cols=130 Identities=24% Similarity=0.274 Sum_probs=99.4
Q ss_pred CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
....|+++|||+|.|+ .+... ..-.|.++.|++++|.+..+.. +..+++|+.||+++|.++ .+..+-.. +-+.+
T Consensus 282 TWq~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIK 355 (490)
T ss_pred hHhhhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhH-hhhhhHhh-hcCEe
Confidence 4467999999999998 66655 5678999999999999987554 777899999999999997 66665555 88999
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCc-hhhccCCCCCEEEccCCccc
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-HLAVGCVYLDFLALSNNSLE 412 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~ 412 (614)
+|.|+.|.+... ..+..+-+|..||+++|+|. .+.+ .-.+.++.|+.+.+.+|++.
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence 999999988633 45778889999999999986 3322 12245566666666666554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=2.9e-10 Score=117.87 Aligned_cols=194 Identities=36% Similarity=0.516 Sum_probs=135.1
Q ss_pred EEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCC-CccEEEccCCcCCCCCccchhccccCcEEEccC
Q 042884 305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP-NLISFNISMNALDGSIPSSFGNINLLKILDLSN 383 (614)
Q Consensus 305 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 383 (614)
.+....+.+... ......++.++.|++.+|.++ .++..... +. +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 455555555321 222333456677777777776 56555543 42 6777777777666 3334556666677777777
Q ss_pred CccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884 384 NQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463 (614)
Q Consensus 384 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 463 (614)
|++. .+|.... .++.|+.|++++|++. .+|........|++|.+++|.+. ..+..+..
T Consensus 173 N~l~-~l~~~~~-------------------~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~ 230 (394)
T COG4886 173 NDLS-DLPKLLS-------------------NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN 230 (394)
T ss_pred chhh-hhhhhhh-------------------hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh
Confidence 7666 5554321 3567777888888887 55555556677999999999644 34577888
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCC
Q 042884 464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC 527 (614)
Q Consensus 464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c 527 (614)
+..+..+.+++|++. ..+..+..++.++.|++++|.++...+ +.....++.+++++|...-
T Consensus 231 ~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 231 LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 999999999999998 447778889999999999999995433 7788899999999986643
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1e-09 Score=119.17 Aligned_cols=92 Identities=33% Similarity=0.539 Sum_probs=81.2
Q ss_pred cCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC-CCCCeE
Q 042884 416 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVF 494 (614)
Q Consensus 416 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l-~~L~~L 494 (614)
+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 4677788888888888999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred eccCCcCcccCCc
Q 042884 495 SLAFNNLSGEIPE 507 (614)
Q Consensus 495 ~l~~N~l~~~~~~ 507 (614)
++.+|+..|..|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999987765443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=3.5e-10 Score=82.34 Aligned_cols=59 Identities=41% Similarity=0.638 Sum_probs=33.1
Q ss_pred cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCc
Q 042884 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500 (614)
Q Consensus 442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~ 500 (614)
+|++|++++|+++.+.++.|.++++|++|++++|.++.+.|+.|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555555555555555555555555555554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6.7e-10 Score=80.84 Aligned_cols=61 Identities=49% Similarity=0.665 Sum_probs=57.1
Q ss_pred CCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcC
Q 042884 417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477 (614)
Q Consensus 417 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l 477 (614)
++|++|++++|+++...+++|.++++|++|++++|+++.+.++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999988889999999999999999999999999999999999999999986
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-10 Score=120.92 Aligned_cols=220 Identities=27% Similarity=0.332 Sum_probs=136.2
Q ss_pred CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCC
Q 042884 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTS 200 (614)
Q Consensus 121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 200 (614)
+..++.+.+..|.+. .+.. .+..+.+|+.|++.+|+|..+ ...+..+++|++|++++|.|. .+.. +..++.
T Consensus 71 l~~l~~l~l~~n~i~----~~~~-~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~ 141 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA----KILN-HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTL 141 (414)
T ss_pred hHhHHhhccchhhhh----hhhc-ccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccc
Confidence 566666777777765 3222 477788888888888888743 333677888888888888887 4544 567777
Q ss_pred CCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcE
Q 042884 201 IEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY 280 (614)
Q Consensus 201 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 280 (614)
|+.|++++|.+. .+ ..+..+..|+.+++++|++...... . ...+.+++.
T Consensus 142 L~~L~l~~N~i~-~~--~~~~~l~~L~~l~l~~n~i~~ie~~---------------------------~-~~~~~~l~~ 190 (414)
T KOG0531|consen 142 LKELNLSGNLIS-DI--SGLESLKSLKLLDLSYNRIVDIEND---------------------------E-LSELISLEE 190 (414)
T ss_pred hhhheeccCcch-hc--cCCccchhhhcccCCcchhhhhhhh---------------------------h-hhhccchHH
Confidence 888888888876 22 3455577888888888877654220 0 235567777
Q ss_pred EEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCC
Q 042884 281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN 360 (614)
Q Consensus 281 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n 360 (614)
+++.+|.+. .+.. +..+..+..+++..|.++.+.+.....+..|+.+++++|++. .++..+- .+..+..|++.+|
T Consensus 191 l~l~~n~i~-~i~~--~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~-~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 191 LDLGGNSIR-EIEG--LDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLE-NLKNLPVLDLSSN 265 (414)
T ss_pred HhccCCchh-cccc--hHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-ccccccc-ccccccccchhhc
Confidence 777777776 2222 233444555567777766543322111112777777777776 4332222 2566777777777
Q ss_pred cCCCCCccchhccccCcEEEccCCccC
Q 042884 361 ALDGSIPSSFGNINLLKILDLSNNQLT 387 (614)
Q Consensus 361 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 387 (614)
++... ..+...+.+..+....|.+.
T Consensus 266 ~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 266 RISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccc--ccccccchHHHhccCcchhc
Confidence 76633 22344455556666666554
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=7.7e-11 Score=111.22 Aligned_cols=211 Identities=18% Similarity=0.179 Sum_probs=131.2
Q ss_pred ccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCC
Q 042884 13 SMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGF 91 (614)
Q Consensus 13 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~ 91 (614)
++...|+|++||||.|.|.......+. -+.++++|++|.|.+|.+...--..++.- |..+- .+ ...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a--l~~l~--~~---------kk~ 153 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA--LFELA--VN---------KKA 153 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH--HHHHH--HH---------hcc
Confidence 444455666666666665543221122 34556666666666665532211111110 00000 00 123
Q ss_pred CCCCCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc----
Q 042884 92 PHFKSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS---- 165 (614)
Q Consensus 92 ~~l~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~---- 165 (614)
+.-+.|+++...+|++.. .+.+...+.. .+.|+.+.+..|.|......+...++..+++|+.|||.+|-++..
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~-~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQS-HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHh-ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 445789999999998752 2333344445 789999999999887766555556788999999999999988753
Q ss_pred cCccccCCCCCcEEEcccCCCCCc----cCCCCCCCCCCCCEEEcccCcCccc---cCcccccCCCCccEEEccCCccc
Q 042884 166 LPWCVANMTSLRILDVSSNQLTGS----IASSPLAHLTSIEELHLSDNHFRIP---ISLEPLFNHSRLKIFDAENNELN 237 (614)
Q Consensus 166 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~~~ 237 (614)
+...++.+++|++|++++|.+... +-...-...+.|++|.+.+|.++.. .........+.|+.|++++|++.
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 345567788999999999988621 1111123478899999999988721 11123445788999999999883
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=3.8e-10 Score=117.10 Aligned_cols=204 Identities=25% Similarity=0.236 Sum_probs=118.7
Q ss_pred CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
.+++|++|++++|.|...-+ +..++.|+.|++++|.|+.+. .+..+..|+.+++++|++. .++......+.+++
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNRIV-DIENDELSELISLE 189 (414)
T ss_pred hhhcchheeccccccccccc---hhhccchhhheeccCcchhcc--CCccchhhhcccCCcchhh-hhhhhhhhhccchH
Confidence 45666777777776663322 445556777777777776533 2344667777777777776 44331012356677
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI 433 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~ 433 (614)
.+++.+|.+... ..+..+..+..+++..|.++..-+... +.. ..|+.+++++|++. ..
T Consensus 190 ~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~---~~~----------------~~L~~l~l~~n~i~-~~ 247 (414)
T KOG0531|consen 190 ELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNE---LVM----------------LHLRELYLSGNRIS-RS 247 (414)
T ss_pred HHhccCCchhcc--cchHHHHHHHHhhcccccceeccCccc---chh----------------HHHHHHhcccCccc-cc
Confidence 777777766532 233444445555666666551111110 000 02566666666665 33
Q ss_pred CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC---CCccc-ccCCCCCCeEeccCCcCcccCCc
Q 042884 434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG---KIPHQ-LVELKTLEVFSLAFNNLSGEIPE 507 (614)
Q Consensus 434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~---~~~~~-l~~l~~L~~L~l~~N~l~~~~~~ 507 (614)
+..+..+..+..|++.+|++... ..+...+.+..+..+.|.+.. ..... ....+.++.+.+.+|+.....+.
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 24566777888888888887655 445566777777777777652 12221 44567788888888888765543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=1e-08 Score=113.86 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=86.6
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCc--CCCCCCCcCchhhcCCCCCCeEECcCCccccccCcccc
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFT--LSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVA 171 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~--l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 171 (614)
....+...+.+|.+. .++.... ++.|++|-+..|. +. .++...|..++.|+.|||++|.=-+.+|+.++
T Consensus 522 ~~~~rr~s~~~~~~~---~~~~~~~--~~~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE---HIAGSSE--NPKLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred hhheeEEEEeccchh---hccCCCC--CCccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 345566666666654 2333222 4577888777774 33 45554577788888888887766667888888
Q ss_pred CCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCC
Q 042884 172 NMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENN 234 (614)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n 234 (614)
.+.+||+|++++..+. .+|.+ ++++..|.+|++..+.....+ ......+++|++|.+...
T Consensus 593 ~Li~LryL~L~~t~I~-~LP~~-l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTGIS-HLPSG-LGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhhhhcccccCCCcc-ccchH-HHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 8888888888888887 77776 788888888888777543222 234445777777776554
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.64 E-value=1.6e-09 Score=111.34 Aligned_cols=176 Identities=24% Similarity=0.290 Sum_probs=119.4
Q ss_pred ChhhhhcCCCccEEEccCCcCCCCCccchhcc-ccCcEEEccCCccCCcCCchhh--------cc--CCCCCEEEccCCc
Q 042884 342 PLEIGDILPNLISFNISMNALDGSIPSSFGNI-NLLKILDLSNNQLTGEIPEHLA--------VG--CVYLDFLALSNNS 410 (614)
Q Consensus 342 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~--------~~--~~~L~~L~l~~n~ 410 (614)
|-.++. +.+|++|.+.++.+.. ...+..+ ..|+.|. ..|.+. .+ ..+| .+ ...|.+.+.+.|.
T Consensus 102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~-Al-~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLD-AL-RHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHH-HH-HHHHHHhccccccchhhhhHhhhhcchhh
Confidence 556666 7889999999988863 1222222 2344442 222221 11 1111 11 2236667777887
Q ss_pred ccc-----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884 411 LEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 485 (614)
Q Consensus 411 l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l 485 (614)
+.. +.++.++.|+|++|+++.. +.+..++.|++|||++|.++....-...++. |+.|.+++|.++.. .++
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhH
Confidence 764 4568899999999999854 3788899999999999999855444444554 99999999998743 457
Q ss_pred cCCCCCCeEeccCCcCcccCC-ccccccCCcCcccccCCcCCCC
Q 042884 486 VELKTLEVFSLAFNNLSGEIP-EWKAQFATFNESSYEGNTFLCG 528 (614)
Q Consensus 486 ~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~~~~~~n~~~c~ 528 (614)
.++.+|+.||+++|-+.+.-. ..+..+..|..+.++|||..|.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 888999999999998874211 2245567888899999999885
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=7.3e-08 Score=107.14 Aligned_cols=128 Identities=16% Similarity=0.050 Sum_probs=67.0
Q ss_pred CCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCC--CCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCC
Q 042884 18 PSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSS--LHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFK 95 (614)
Q Consensus 18 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~ 95 (614)
...+...+-+|.+..+ +.-..++.|++|-+..|. +.......|..++.|++|++++|.-.+.+|. .++.+-
T Consensus 523 ~~~rr~s~~~~~~~~~-----~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~--~I~~Li 595 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-----AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS--SIGELV 595 (889)
T ss_pred hheeEEEEeccchhhc-----cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh--HHhhhh
Confidence 4455566666555433 111223356666666553 3222233355566666666666555555553 455666
Q ss_pred CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCC
Q 042884 96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN 160 (614)
Q Consensus 96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n 160 (614)
+|++|++++..+. .+|..+.+ +..|.+|++..+.-.. .++.....+++||+|.+...
T Consensus 596 ~LryL~L~~t~I~---~LP~~l~~-Lk~L~~Lnl~~~~~l~----~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS---HLPSGLGN-LKKLIYLNLEVTGRLE----SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhcccccCCCcc---ccchHHHH-HHhhheeccccccccc----cccchhhhcccccEEEeecc
Confidence 6666666666655 56666666 6666666665544331 22323444666666666444
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=1.8e-09 Score=110.98 Aligned_cols=178 Identities=25% Similarity=0.319 Sum_probs=95.9
Q ss_pred ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCcccc----------CCccCCCCCCCCCCCCEEeCcCcccCC
Q 042884 40 ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEV----------NGVVRGQGFPHFKSLEHLNMERARIAP 109 (614)
Q Consensus 40 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~----------~~~~~~~~~~~l~~L~~L~l~~n~l~~ 109 (614)
.+-.+++|++|.+.++.+.. ...+..+..-.+-++.++... +.+- .-.....|.+.+.++|.+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~---ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS---NSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred eeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc---cchhhhhHhhhhcchhhHH-
Confidence 45567788888888887643 222322222222222222211 1111 0111235556666666665
Q ss_pred CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCc-cccCCCCCcEEEcccCCCCC
Q 042884 110 NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW-CVANMTSLRILDVSSNQLTG 188 (614)
Q Consensus 110 ~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~ 188 (614)
.+-..+.- ++.|+.|+|+.|+++. .. .+..+++|++|||++|.+.. +|. ...++. |+.|.+++|.++
T Consensus 178 --~mD~SLql-l~ale~LnLshNk~~~----v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~- 245 (1096)
T KOG1859|consen 178 --LMDESLQL-LPALESLNLSHNKFTK----VD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALT- 245 (1096)
T ss_pred --hHHHHHHH-HHHhhhhccchhhhhh----hH--HHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHH-
Confidence 44445544 6666777777766652 21 46666677777777776662 332 223333 666777776665
Q ss_pred ccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccc
Q 042884 189 SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN 237 (614)
Q Consensus 189 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 237 (614)
++-. +.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+.
T Consensus 246 tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 246 TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4443 5666666677777766654444445555566666666666543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.6e-09 Score=95.31 Aligned_cols=173 Identities=24% Similarity=0.195 Sum_probs=109.5
Q ss_pred ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCc-cCCcCCchhhccCCCCCEE
Q 042884 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQ-LTGEIPEHLAVGCVYLDFL 404 (614)
Q Consensus 326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L 404 (614)
.|+.+||+...|+..--..+...+..|+.|.|.++++...+...++.-.+|+.|+++.+. ++..--..++..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666655432222333446667777777777766666666666777777777753 3322333456677777777
Q ss_pred EccCCcccc--------cccCCccEEEcCCCcCC---ccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEc
Q 042884 405 ALSNNSLEG--------KVLSLLSGLDLSCNKLI---GHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDL 472 (614)
Q Consensus 405 ~l~~n~l~~--------~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 472 (614)
+++.|.+.. ..-+.|+.|+|+++.-. ..+..--..+++|.+||||+|. ++...-..|..++-|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776553 23456777888776422 1122223568899999999874 44322345667888999999
Q ss_pred cCCcCCCCCcccc---cCCCCCCeEeccCCc
Q 042884 473 SYNKLNGKIPHQL---VELKTLEVFSLAFNN 500 (614)
Q Consensus 473 s~N~l~~~~~~~l---~~l~~L~~L~l~~N~ 500 (614)
+.|.. ++|+.+ ...|+|.+||+.++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 98875 566654 456788888887763
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.1e-09 Score=96.27 Aligned_cols=184 Identities=15% Similarity=0.090 Sum_probs=112.1
Q ss_pred CCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCC
Q 042884 19 SLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSL 97 (614)
Q Consensus 19 ~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L 97 (614)
.|++||||+-.|+... .. -++.|..|+.|.+.+++++..+...++.-..|++++++.++-.........+.+++.|
T Consensus 186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 4788888887776431 23 5677888888888888888777778888888888888877755444333456777888
Q ss_pred CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcc-ccccCccccCCCCC
Q 042884 98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDL-RGSLPWCVANMTSL 176 (614)
Q Consensus 98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L 176 (614)
..|+++.+.+... .+-..+..--++|..|+++++.-.-.. .-.+.-...+++|..|||++|.. +...-..|..++.|
T Consensus 263 ~~LNlsWc~l~~~-~Vtv~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 263 DELNLSWCFLFTE-KVTVAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hhcCchHhhccch-hhhHHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 8888888776531 111222222456777777765321100 11111124567777777776642 32223345566777
Q ss_pred cEEEcccCCCCCccCCC--CCCCCCCCCEEEcccC
Q 042884 177 RILDVSSNQLTGSIASS--PLAHLTSIEELHLSDN 209 (614)
Q Consensus 177 ~~L~L~~n~l~~~~~~~--~~~~l~~L~~L~L~~n 209 (614)
++|+++.|.. .+|.. .+...|.|.+|++.++
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 7777777753 22322 1455667777776665
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=5.9e-08 Score=79.46 Aligned_cols=106 Identities=21% Similarity=0.299 Sum_probs=53.2
Q ss_pred ccEEEccCCcCCCC--CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884 352 LISFNISMNALDGS--IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL 429 (614)
Q Consensus 352 L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l 429 (614)
+..++|++|++-.. .+..+.....|+..++++|.+. .+|..+....+ .++.++|++|.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~------------------t~t~lNl~~nei 89 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFP------------------TATTLNLANNEI 89 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccc------------------hhhhhhcchhhh
Confidence 44455555554311 1122333445556666777666 56665533222 233333333444
Q ss_pred CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478 (614)
Q Consensus 430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 478 (614)
+ .+|..+..++.|+.|+++.|.+... |..+..+.++-.|+..+|.+.
T Consensus 90 s-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 90 S-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred h-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCccc
Confidence 4 4445566666666666666666532 334444556666666666555
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=5.6e-07 Score=83.54 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=36.1
Q ss_pred ccCCccEEEcCCCcCCcc-CCccccCCCcCCEEECcCCcCCCCC-CcCCCCCCCCCEEEccCCcCCC
Q 042884 415 VLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKHIESLDLSYNKLNG 479 (614)
Q Consensus 415 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~ 479 (614)
..+++..+.+..|++... ....+..++.+.-|+|+.|+|.+.. -+.+.++++|+.|.+++|.+..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 345555566666655432 1233445555666667666664321 1445666677777777776653
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=5.6e-07 Score=83.55 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=39.5
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc-CccccC
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL-PWCVAN 172 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~ 172 (614)
++.++.+||.+|.++.-..+...+.+ +|.|++|+++.|.+....-..| ..+.+|++|.|.+..+.-.. ...+..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~-lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQ-LPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhc-CccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 34555566666655532233333333 5566666666555553111111 13445555555555443221 122344
Q ss_pred CCCCcEEEcccC
Q 042884 173 MTSLRILDVSSN 184 (614)
Q Consensus 173 l~~L~~L~L~~n 184 (614)
++.+++|+++.|
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 455555555555
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=3.4e-07 Score=75.05 Aligned_cols=114 Identities=23% Similarity=0.358 Sum_probs=82.0
Q ss_pred CCcEEEccCCCCCCCCChhH--HhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884 277 DLEYVDLSHTKMNGEFPNWL--LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~ 354 (614)
.+..++|+.|++. .+++.. ......|+..++++|.+...++.--...+.++.+++++|.|+ .+|.++.. ++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhh
Confidence 4566788888775 454432 344566777788888887655544445567888888888887 78888544 888888
Q ss_pred EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhh
Q 042884 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA 395 (614)
Q Consensus 355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 395 (614)
|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+|
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 888888887 45666666888888888888876 7776654
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=2.8e-07 Score=84.42 Aligned_cols=196 Identities=20% Similarity=0.214 Sum_probs=98.7
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhc---CCCcCEEeccCCcCCCCCCCcCc------hhhcCCCCCCeEECcCCcccc
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGES---TPSLKYLSLSDFTLSTNSSRILD------RGLCSLMHLQELYKVNNDLRG 164 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~---l~~L~~L~L~~n~l~~~~~~i~~------~~~~~l~~L~~L~L~~n~i~~ 164 (614)
+..++.++|++|.+.. .-...+++. -.+|+..+++.--.....-.+++ .++.++|+|+..+|+.|.+..
T Consensus 29 ~d~~~evdLSGNtigt--EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGT--EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccH--HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 5566666666666642 222233221 34555555554221111101111 246677888888888887776
Q ss_pred ccCcc----ccCCCCCcEEEcccCCCCCccCCCCC-------------CCCCCCCEEEcccCcCcc-c--cCcccccCCC
Q 042884 165 SLPWC----VANMTSLRILDVSSNQLTGSIASSPL-------------AHLTSIEELHLSDNHFRI-P--ISLEPLFNHS 224 (614)
Q Consensus 165 ~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~-------------~~l~~L~~L~L~~n~~~~-~--~~~~~~~~l~ 224 (614)
..|.. ++.-+.|++|.|++|.+. .+..+-+ ..-|.|+......|++.. . .....+....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 55543 345567888888887764 3333211 234566666666665531 0 0111122334
Q ss_pred CccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC---ChhHHhcCC
Q 042884 225 RLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF---PNWLLENNT 301 (614)
Q Consensus 225 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~~~ 301 (614)
.|+++.+.+|.|....... | ....++.+++|++||+.+|.++-.- -......++
T Consensus 186 ~lk~vki~qNgIrpegv~~------------L-----------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTM------------L-----------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred CceeEEeeecCcCcchhHH------------H-----------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 5556666555543211000 0 0112345677888888888776211 111233455
Q ss_pred CccEEEccCCCCCC
Q 042884 302 KLKTLFLVNDSLAG 315 (614)
Q Consensus 302 ~L~~L~l~~n~i~~ 315 (614)
.|+.|.+.+|-++.
T Consensus 243 ~lrEL~lnDClls~ 256 (388)
T COG5238 243 LLRELRLNDCLLSN 256 (388)
T ss_pred hhhhccccchhhcc
Confidence 66777776666553
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.04 E-value=8.2e-06 Score=71.84 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=90.4
Q ss_pred CCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCC
Q 042884 97 LEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL 176 (614)
Q Consensus 97 L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 176 (614)
=+.+++.+..+. ..+.++....+...+||++|.+. .++ .|..++.|.+|.+++|+|+.+.|.--.-+++|
T Consensus 21 e~e~~LR~lkip----~ienlg~~~d~~d~iDLtdNdl~----~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l 90 (233)
T KOG1644|consen 21 ERELDLRGLKIP----VIENLGATLDQFDAIDLTDNDLR----KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNL 90 (233)
T ss_pred cccccccccccc----chhhccccccccceecccccchh----hcc--cCCCccccceEEecCCcceeeccchhhhcccc
Confidence 345555555543 11223443567788899999876 333 47888999999999999998777666667889
Q ss_pred cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccc--cCcccccCCCCccEEEccCCc
Q 042884 177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIP--ISLEPLFNHSRLKIFDAENNE 235 (614)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~l~~n~ 235 (614)
+.|.|.+|.|...-.-..+..+|+|++|.+-+|+.... .-...+..+++|++||++.-.
T Consensus 91 ~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 91 KTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99999999887222223367889999999999987621 112235678999999987643
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2e-05 Score=78.79 Aligned_cols=130 Identities=15% Similarity=0.257 Sum_probs=75.4
Q ss_pred hcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCC-cCCCCCccchhccccC
Q 042884 298 ENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN-ALDGSIPSSFGNINLL 376 (614)
Q Consensus 298 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 376 (614)
..+.+++.|++++|.++.++. -..+|+.|.++++.--..+|..+ .++|+.|++++| .+. .+| .+|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------ccc
Confidence 346888999999988777541 23478889888743323666533 357888888887 444 333 346
Q ss_pred cEEEccCCccC--CcCCchhhccCCCCCEEEccCCc-c-----cccccCCccEEEcCCCcCCccCCccccCCCcCCEEEC
Q 042884 377 KILDLSNNQLT--GEIPEHLAVGCVYLDFLALSNNS-L-----EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 448 (614)
Q Consensus 377 ~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~l~~n~-l-----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 448 (614)
+.|+++.+... +.+|. +|+.|.+.+++ . ....|++|++|++++|... ..|+.+. .+|+.|++
T Consensus 115 e~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcccccCcc-------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 67777665542 12332 34555554322 1 1123556777777666654 2333333 46666666
Q ss_pred cCC
Q 042884 449 SHN 451 (614)
Q Consensus 449 ~~n 451 (614)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 655
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.2e-05 Score=53.37 Aligned_cols=36 Identities=39% Similarity=0.645 Sum_probs=19.5
Q ss_pred CCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc
Q 042884 466 HIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 466 ~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 502 (614)
+|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666665 34444556666666666666555
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.82 E-value=3.8e-05 Score=65.58 Aligned_cols=123 Identities=24% Similarity=0.301 Sum_probs=66.1
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCC
Q 042884 271 FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP 350 (614)
Q Consensus 271 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~ 350 (614)
.|.++++|+.+.+.. .+. .++...|..+++|+.+.+..+ +..+....|.++++++.+.+.+ .+. .++...+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 455667788888774 444 566666788888888888774 7777777788887888888865 443 45566666678
Q ss_pred CccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCC
Q 042884 351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLD 402 (614)
Q Consensus 351 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 402 (614)
+++.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 8888888765 554556677776 888888776 444 67777777776653
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=9.3e-06 Score=88.25 Aligned_cols=139 Identities=18% Similarity=0.267 Sum_probs=81.9
Q ss_pred CCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884 95 KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT 174 (614)
Q Consensus 95 ~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 174 (614)
.+|++|++++...- ....+..++..+|.|++|.+++-.+.. .-...-..++|+|..||+++++++.. ..+++++
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL--SGISRLK 195 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc--HHHhccc
Confidence 46777777775432 125566666667777777777755543 11112334677777777777777643 5667777
Q ss_pred CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcccc-----CcccccCCCCccEEEccCCccccc
Q 042884 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPI-----SLEPLFNHSRLKIFDAENNELNAE 239 (614)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~ 239 (614)
+|+.|.+.+=.+...-.-..+-++++|+.||+|..+..... ..+.-..+++|+.||.++..+...
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 77777776655542111112456777777777765543111 011233567888888887766544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=0.00012 Score=73.30 Aligned_cols=134 Identities=16% Similarity=0.279 Sum_probs=84.1
Q ss_pred CCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCC-ccCCcCCchhhccCCCC
Q 042884 323 SHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNN-QLTGEIPEHLAVGCVYL 401 (614)
Q Consensus 323 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~L 401 (614)
.+.+++.|++++|.++ .+|. ..++|+.|.++++.--..+|+.+ .++|+.|++++| .+. .+|. +|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SV 114 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------cc
Confidence 4578889999999887 7772 24579999998754434556544 357888999888 554 4543 46
Q ss_pred CEEEccCCccc--ccccCCccEEEcCCCcCC--ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCc
Q 042884 402 DFLALSNNSLE--GKVLSLLSGLDLSCNKLI--GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476 (614)
Q Consensus 402 ~~L~l~~n~l~--~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~ 476 (614)
+.|+++++... +..|++|+.|.+.+++.. ...|..+. ++|++|++++|.... .|..+. .+|+.|+++.|.
T Consensus 115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ceEEeCCCCCcccccCcchHhheeccccccccccccccccC--CcccEEEecCCCccc-Cccccc--ccCcEEEecccc
Confidence 67777665543 245677888877543311 01111111 568888888777552 333333 577888887763
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.1e-05 Score=52.18 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=16.2
Q ss_pred CCCeEECcCCccccccCccccCCCCCcEEEcccCCCC
Q 042884 151 HLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLT 187 (614)
Q Consensus 151 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 187 (614)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4445555555554 23333445555555555555444
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=3.8e-06 Score=91.27 Aligned_cols=160 Identities=21% Similarity=0.319 Sum_probs=109.0
Q ss_pred CCcCEEeccCCcCCCCCCCcCchhh-cCCCCCCeEECcCCccccc-cCccccCCCCCcEEEcccCCCCCccCCCCCCCCC
Q 042884 122 PSLKYLSLSDFTLSTNSSRILDRGL-CSLMHLQELYKVNNDLRGS-LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLT 199 (614)
Q Consensus 122 ~~L~~L~L~~n~l~~~~~~i~~~~~-~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 199 (614)
.+|++|++++..... .--+..+ ..+|.|++|.+.+-.+... .-....++++|..||+|+.+++ .+.. ++.++
T Consensus 122 ~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~G--IS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLSG--ISRLK 195 (699)
T ss_pred HhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcHH--Hhccc
Confidence 589999998865432 1111123 4689999999998776432 2233567899999999999998 5643 78999
Q ss_pred CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCc
Q 042884 200 SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLE 279 (614)
Q Consensus 200 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 279 (614)
+|+.|.+.+=.+........+.++++|++||+|..+..... .+-..++ +.-..+|+|+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii~qYl-----------ec~~~LpeLr 253 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KIIEQYL-----------ECGMVLPELR 253 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHHHHHH-----------HhcccCcccc
Confidence 99999998877764344456889999999999986543321 1111111 1223478999
Q ss_pred EEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884 280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLV 309 (614)
Q Consensus 280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 309 (614)
.||.|++.+...+-..+...-++|+.+..-
T Consensus 254 fLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 254 FLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred EEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 999999988866655555555666655443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=3.3e-05 Score=68.13 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=85.5
Q ss_pred EEEccCCccc-----ccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcC
Q 042884 403 FLALSNNSLE-----GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477 (614)
Q Consensus 403 ~L~l~~n~l~-----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l 477 (614)
.+++.+.++. |........+||++|.+... +.|..+++|..|.|++|+|+.+.|..-.-++.|+.|.|.+|.|
T Consensus 23 e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 23 ELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccccccccchhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 4444444443 23356677899999988643 4578889999999999999988887777778899999999988
Q ss_pred CCCC-cccccCCCCCCeEeccCCcCcccCC---ccccccCCcCcccccC
Q 042884 478 NGKI-PHQLVELKTLEVFSLAFNNLSGEIP---EWKAQFATFNESSYEG 522 (614)
Q Consensus 478 ~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~~~~~~ 522 (614)
.... -+-+..+|.|++|.+-+|+.+..-- ..+..+++++.+|+++
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7421 1236678899999999999874322 1345677788888765
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=6.1e-05 Score=64.30 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=68.4
Q ss_pred CChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh
Q 042884 292 FPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG 371 (614)
Q Consensus 292 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 371 (614)
++...|.++.+|+.+.+.. .+..+...+|.++++++.+++.++ +. .++...+..+++++.+.+.+ .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence 4556688888999999875 677777888988888999998875 65 67777777777899999876 55445566788
Q ss_pred ccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC
Q 042884 372 NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408 (614)
Q Consensus 372 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 408 (614)
.+++|+.+++..+ +. .++...|.++ .|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 8889999988775 55 6777777766 666665543
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.53 E-value=4.2e-05 Score=70.44 Aligned_cols=189 Identities=19% Similarity=0.121 Sum_probs=105.8
Q ss_pred ccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhh-ccCCcEEeccCccccCCccCC
Q 042884 11 LQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIAS-LFPSLKNLSMSYCEVNGVVRG 88 (614)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~ 88 (614)
.+++.++|+|+..+||.|.|.......+. -+++-+.|.+|.+++|.+....-..++. +..|- .|.
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la-----~nK-------- 151 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA-----YNK-------- 151 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH-----HHh--------
Confidence 34667788888888888887655321111 4677788888888888764222112210 00000 011
Q ss_pred CCCCCCCCCCEEeCcCcccCC-CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCc-hhhcCCCCCCeEECcCCcccccc
Q 042884 89 QGFPHFKSLEHLNMERARIAP-NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILD-RGLCSLMHLQELYKVNNDLRGSL 166 (614)
Q Consensus 89 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~-~~~~~l~~L~~L~L~~n~i~~~~ 166 (614)
-..+-|.|++.....|++.. ...........-.+|+++.+..|.|....+.... ..+..+.+|+.||+..|.++...
T Consensus 152 -Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g 230 (388)
T COG5238 152 -KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred -hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence 13344667777777777652 1122222222135777888887777642211111 13455678888888888776432
Q ss_pred ----CccccCCCCCcEEEcccCCCCCccCCCC---C--CCCCCCCEEEcccCcCcc
Q 042884 167 ----PWCVANMTSLRILDVSSNQLTGSIASSP---L--AHLTSIEELHLSDNHFRI 213 (614)
Q Consensus 167 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~--~~l~~L~~L~L~~n~~~~ 213 (614)
..+++..+.|+.|.+..|-++..-.... | ...++|..|-..+|...+
T Consensus 231 S~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 231 SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 3445566678888888876652111111 1 135777888888886654
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.15 E-value=2.2e-05 Score=76.64 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=23.2
Q ss_pred CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC
Q 042884 274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS 312 (614)
Q Consensus 274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 312 (614)
.+..|+.+.++++.......-.....+++|+.+++-+++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 455677777777765433222335566777777766554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.0006 Score=63.07 Aligned_cols=85 Identities=26% Similarity=0.344 Sum_probs=45.7
Q ss_pred CCCCCccCEEEccCC--ccccCCChhhhhcCCCccEEEccCCcCCC-CCccchhccccCcEEEccCCccCCcCC---chh
Q 042884 321 IHSHKRLRQLDVSNN--NFQGHIPLEIGDILPNLISFNISMNALDG-SIPSSFGNINLLKILDLSNNQLTGEIP---EHL 394 (614)
Q Consensus 321 ~~~l~~L~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~ 394 (614)
|..+++|++|.++.| ++.+.++.-+-. +|+|+++++++|++.. ..-..+..+.+|..|++.+|..+. .. ..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHH
Confidence 334556666666666 444333333333 4677777777776652 111224455666777777776552 22 234
Q ss_pred hccCCCCCEEEcc
Q 042884 395 AVGCVYLDFLALS 407 (614)
Q Consensus 395 ~~~~~~L~~L~l~ 407 (614)
|.-+++|++|+-.
T Consensus 139 f~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 139 FLLLPSLKYLDGC 151 (260)
T ss_pred HHHhhhhcccccc
Confidence 5556666665543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=2.9e-05 Score=71.80 Aligned_cols=81 Identities=23% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCC-CCCCCCC
Q 042884 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIAS-SPLAHLT 199 (614)
Q Consensus 121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~ 199 (614)
+.+.+.|++.++.+++ |. -...|+.|+.|.|+-|+|+...| |..|++|++|.|..|.|. .+.. ..+.+++
T Consensus 18 l~~vkKLNcwg~~L~D----Is--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----IS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccH----HH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 4455566666665552 11 12345566666666666553332 555555555555555554 2211 1233444
Q ss_pred CCCEEEcccCc
Q 042884 200 SIEELHLSDNH 210 (614)
Q Consensus 200 ~L~~L~L~~n~ 210 (614)
+|+.|.|..|+
T Consensus 89 sLr~LWL~ENP 99 (388)
T KOG2123|consen 89 SLRTLWLDENP 99 (388)
T ss_pred hhhhHhhccCC
Confidence 44444444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00016 Score=66.99 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=39.6
Q ss_pred ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCc-hhhccCCCCCEE
Q 042884 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-HLAVGCVYLDFL 404 (614)
Q Consensus 326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L 404 (614)
++++|+..++.+. .| .++..++.|++|.|+-|+|+.. ..|..|++|++|+|..|.|. .+.+ ....++++|+.|
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 4444555555443 22 2333455555555555555533 22555555666666655554 2222 223455555555
Q ss_pred EccCCccc
Q 042884 405 ALSNNSLE 412 (614)
Q Consensus 405 ~l~~n~l~ 412 (614)
+|..|+-.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 55555443
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.56 E-value=0.00049 Score=67.58 Aligned_cols=162 Identities=19% Similarity=0.070 Sum_probs=79.8
Q ss_pred cCCcEEeccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchh-hc
Q 042884 69 FPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRG-LC 147 (614)
Q Consensus 69 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~-~~ 147 (614)
..+.++++.+++......-...-..+..|++|+.+++.-.+ ..+...++...++|+.|.++.++--+ ..-... -.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~-d~~l~aLg~~~~~L~~l~l~~c~~fs---d~~ft~l~r 343 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT-DEVLWALGQHCHNLQVLELSGCQQFS---DRGFTMLGR 343 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc-hHHHHHHhcCCCceEEEeccccchhh---hhhhhhhhc
Confidence 33455555555443322111123445667777777665322 13344555557777777777765221 100001 13
Q ss_pred CCCCCCeEECcCCcccc--ccCccccCCCCCcEEEcccCCCCCccC----CCCCCCCCCCCEEEcccCcCccccCccccc
Q 042884 148 SLMHLQELYKVNNDLRG--SLPWCVANMTSLRILDVSSNQLTGSIA----SSPLAHLTSIEELHLSDNHFRIPISLEPLF 221 (614)
Q Consensus 148 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 221 (614)
+.+.|+.+++.++.... .+...-.+++.|+.|.++++.....-. ...-..+..|+.+.+++++...+.....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 56677777777665431 122223456677777777664320100 001123456666777776654333333445
Q ss_pred CCCCccEEEccCC
Q 042884 222 NHSRLKIFDAENN 234 (614)
Q Consensus 222 ~l~~L~~L~l~~n 234 (614)
.+++|+.+++-++
T Consensus 424 ~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 424 ICRNLERIELIDC 436 (483)
T ss_pred hCcccceeeeech
Confidence 5555665555444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.0021 Score=59.59 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=26.7
Q ss_pred CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEEC
Q 042884 93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYK 157 (614)
Q Consensus 93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L 157 (614)
++++|++|++++|.+.....+ ..+.. +++|..|++..|..+. .-..-...|.-+++|++|+-
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl-~pl~~-l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTL-RPLKE-LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hCCceeEEeecCCcccccccc-chhhh-hcchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 345555555555555421111 12223 4555555555554432 00111123444555555544
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.02 E-value=0.0049 Score=65.81 Aligned_cols=113 Identities=21% Similarity=0.107 Sum_probs=57.8
Q ss_pred CCCCCcEEEccCCCCCCCC-ChhHHhcCCCccEEEccCC-CCCCCC----CCCCCCCCccCEEEccCCc-cccCCChhhh
Q 042884 274 HQHDLEYVDLSHTKMNGEF-PNWLLENNTKLKTLFLVND-SLAGPF----RLPIHSHKRLRQLDVSNNN-FQGHIPLEIG 346 (614)
Q Consensus 274 ~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~~L~~L~l~~n-~i~~~~----~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~ 346 (614)
.++.|+.+.+..+.-.... -..+...++.|+.|+++.+ ...... ......+++|+.|+++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3677777777776332221 1223556777888877763 111111 1122334666677776665 4322222333
Q ss_pred hcCCCccEEEccCCc-CCCC-CccchhccccCcEEEccCCcc
Q 042884 347 DILPNLISFNISMNA-LDGS-IPSSFGNINLLKILDLSNNQL 386 (614)
Q Consensus 347 ~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l 386 (614)
..+++|+.|.+.++. ++.. +......+++|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 335667777666555 3422 122234456677777776643
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.78 E-value=0.0064 Score=64.93 Aligned_cols=114 Identities=24% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCCCCEEECCCc-ccCCCCCCCCcccCCCCCCCEEeCCCC-CCCcc----chHHHhhccCCcEEeccCccccCCccCCCC
Q 042884 17 LPSLNTLYLKHN-NFTGTATTTTQELHNFTNLEYSTLSGS-SLHIS----LLQSIASLFPSLKNLSMSYCEVNGVVRGQG 90 (614)
Q Consensus 17 l~~L~~L~Ls~n-~i~~~~~~~~~~l~~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~ 90 (614)
.++|+.|.+.++ .+.... ..+....++.|+.|+++.+ ..... .......+..+..++++.+...+...-...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 566666666655 233210 0124455666666666652 11111 112233445566666665553222211111
Q ss_pred CCCCCCCCEEeCcCcc-cCCCcchhhHhhhcCCCcCEEeccCCcC
Q 042884 91 FPHFKSLEHLNMERAR-IAPNTSFLQIIGESTPSLKYLSLSDFTL 134 (614)
Q Consensus 91 ~~~l~~L~~L~l~~n~-l~~~~~~~~~l~~~l~~L~~L~L~~n~l 134 (614)
...+++|++|.+.++. ++. .-...+...++.|++|+++++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCcc
Confidence 2225666666665555 332 22233333366677777766543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.46 E-value=0.014 Score=31.97 Aligned_cols=12 Identities=58% Similarity=0.681 Sum_probs=5.2
Q ss_pred CCEEEccCCcCC
Q 042884 467 IESLDLSYNKLN 478 (614)
Q Consensus 467 L~~L~ls~N~l~ 478 (614)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.45 E-value=0.032 Score=68.11 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=43.3
Q ss_pred EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc-cccccCCcCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 042884 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE-WKAQFATFNESSYEGNTFLCGLPLPICRSPATTPEASIGNER 549 (614)
Q Consensus 471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~ 549 (614)
||++|+|+.+.+..|..+++|+.|+|++|++.|.+.- |+..|..-....+. ......|..|...++.+.....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~------~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR------QPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc------CCcccCCCCChHHCCCCcccCC
Confidence 5778888877667777777888888888777765442 23322211111000 0011257788777776666555
Q ss_pred CCC
Q 042884 550 DDN 552 (614)
Q Consensus 550 ~~~ 552 (614)
..+
T Consensus 75 ~~d 77 (2740)
T TIGR00864 75 LLD 77 (2740)
T ss_pred ccc
Confidence 443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.31 E-value=0.018 Score=31.59 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=4.3
Q ss_pred CeEECcCCccc
Q 042884 153 QELYKVNNDLR 163 (614)
Q Consensus 153 ~~L~L~~n~i~ 163 (614)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33344444333
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.46 E-value=0.00052 Score=71.58 Aligned_cols=190 Identities=22% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCEEeCCCCCCCccchH----HHhhccCCcEEeccCccccCCccC--CCCCCCC-CCCCEEeCcCcccCC--CcchhhHh
Q 042884 47 LEYSTLSGSSLHISLLQ----SIASLFPSLKNLSMSYCEVNGVVR--GQGFPHF-KSLEHLNMERARIAP--NTSFLQII 117 (614)
Q Consensus 47 L~~L~Ls~n~~~~~~~~----~~~~l~~l~~l~l~~~~~~~~~~~--~~~~~~l-~~L~~L~l~~n~l~~--~~~~~~~l 117 (614)
+.+|.|.+|.+...... .+...+.+..+++.+|++.+.-.. ...+... ..+++|++..+.++. ...+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55555555555433222 233344444555555544311000 0112222 445556666666542 22444555
Q ss_pred hhcCCCcCEEeccCCcCCCCCCCcCchhhc----CCCCCCeEECcCCccccc----cCccccCCCC-CcEEEcccCCCCC
Q 042884 118 GESTPSLKYLSLSDFTLSTNSSRILDRGLC----SLMHLQELYKVNNDLRGS----LPWCVANMTS-LRILDVSSNQLTG 188 (614)
Q Consensus 118 ~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~-L~~L~L~~n~l~~ 188 (614)
.. ...++.++++.|.+........+.++. ...++++|++++|.++.. ....+...+. +..|++..|.+.+
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 55 667777777777664322222222333 356677777777766521 1122333444 5567777776652
Q ss_pred c----cCCCCCCCC-CCCCEEEcccCcCcccc---CcccccCCCCccEEEccCCcccc
Q 042884 189 S----IASSPLAHL-TSIEELHLSDNHFRIPI---SLEPLFNHSRLKIFDAENNELNA 238 (614)
Q Consensus 189 ~----~~~~~~~~l-~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~ 238 (614)
. +.. .+..+ ..+++++++.|.++..- -...+..++.++.+.+++|.+..
T Consensus 248 ~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 111 13333 55677777777765211 11223445567777777766554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.46 E-value=0.00098 Score=69.58 Aligned_cols=194 Identities=23% Similarity=0.208 Sum_probs=125.8
Q ss_pred CCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhh----c-cCCcEEeccCccccCCc--cCCCC
Q 042884 19 SLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIAS----L-FPSLKNLSMSYCEVNGV--VRGQG 90 (614)
Q Consensus 19 ~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~----l-~~l~~l~l~~~~~~~~~--~~~~~ 90 (614)
.+..|+|.+|.+..-....+. .+....+|..|+++.|.+.......+.. . ..++++.+..|...+.- +....
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377888888888766433333 6777888888899888876433332222 1 23444556666554221 11134
Q ss_pred CCCCCCCCEEeCcCcccC--CCcchhhHhhh---cCCCcCEEeccCCcCCCCCCCcCchhhcCCCC-CCeEECcCCcccc
Q 042884 91 FPHFKSLEHLNMERARIA--PNTSFLQIIGE---STPSLKYLSLSDFTLSTNSSRILDRGLCSLMH-LQELYKVNNDLRG 164 (614)
Q Consensus 91 ~~~l~~L~~L~l~~n~l~--~~~~~~~~l~~---~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~-L~~L~L~~n~i~~ 164 (614)
+.....++.++++.|.+. +...++..+.. ...++++|++++|.++..........+...+. +..|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 666788899999988873 11122333332 36789999999998876444444456666666 7789999998875
Q ss_pred cc----CccccCC-CCCcEEEcccCCCCCccCC---CCCCCCCCCCEEEcccCcCc
Q 042884 165 SL----PWCVANM-TSLRILDVSSNQLTGSIAS---SPLAHLTSIEELHLSDNHFR 212 (614)
Q Consensus 165 ~~----~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~~~ 212 (614)
.. ...+..+ ..+++++++.|.+.+.-.. ..+..++.++++.++.|++.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 42 2334555 6789999999998732111 12456779999999999876
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.10 E-value=0.11 Score=29.77 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=12.6
Q ss_pred CCCcEEEcccCCCCCccCCCCC
Q 042884 174 TSLRILDVSSNQLTGSIASSPL 195 (614)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~ 195 (614)
++|+.|+|++|++. .+|.++|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.10 E-value=0.11 Score=29.77 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=12.6
Q ss_pred CCCcEEEcccCCCCCccCCCCC
Q 042884 174 TSLRILDVSSNQLTGSIASSPL 195 (614)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~ 195 (614)
++|+.|+|++|++. .+|.++|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5565544
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.74 E-value=0.11 Score=26.29 Aligned_cols=13 Identities=69% Similarity=0.861 Sum_probs=4.9
Q ss_pred cCcEEEccCCccC
Q 042884 375 LLKILDLSNNQLT 387 (614)
Q Consensus 375 ~L~~L~l~~n~l~ 387 (614)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.17 E-value=0.19 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=8.8
Q ss_pred CCCCEEEccCCcCCCC
Q 042884 465 KHIESLDLSYNKLNGK 480 (614)
Q Consensus 465 ~~L~~L~ls~N~l~~~ 480 (614)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555566666655533
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.17 E-value=0.19 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=8.8
Q ss_pred CCCCEEEccCCcCCCC
Q 042884 465 KHIESLDLSYNKLNGK 480 (614)
Q Consensus 465 ~~L~~L~ls~N~l~~~ 480 (614)
++|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555566666655533
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.38 E-value=0.0061 Score=55.34 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEec
Q 042884 417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL 496 (614)
Q Consensus 417 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l 496 (614)
...+.||++.|++. .....|+-++.|..|+++.|.+. ..|..+..+..++.+++..|..+ ..|..+...+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34455666666654 22334555556666666666665 44555666666666666666665 55566666666666666
Q ss_pred cCCcCc
Q 042884 497 AFNNLS 502 (614)
Q Consensus 497 ~~N~l~ 502 (614)
.+|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666643
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.57 E-value=0.028 Score=51.21 Aligned_cols=88 Identities=23% Similarity=0.245 Sum_probs=63.2
Q ss_pred cCCchhhccCCCCCEEEccCCcccc-----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884 389 EIPEHLAVGCVYLDFLALSNNSLEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463 (614)
Q Consensus 389 ~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 463 (614)
.+|-.-.......+.||++.|++.. ..++.+..|+++.|.+. ..|..+.++..++.+++.+|..+ ..|.++..
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 3443323455667778888887653 34566777888888877 66777888888888888888776 55778888
Q ss_pred CCCCCEEEccCCcCC
Q 042884 464 LKHIESLDLSYNKLN 478 (614)
Q Consensus 464 l~~L~~L~ls~N~l~ 478 (614)
.++++.+++..|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 888888888888765
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.28 E-value=0.49 Score=26.39 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=6.9
Q ss_pred CCCCEEeCCCCCCCcc
Q 042884 45 TNLEYSTLSGSSLHIS 60 (614)
Q Consensus 45 ~~L~~L~Ls~n~~~~~ 60 (614)
++|++|++++|.++..
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555554433
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.85 E-value=12 Score=38.40 Aligned_cols=158 Identities=15% Similarity=-0.021 Sum_probs=74.6
Q ss_pred CCCEEeCcCcccCCCcchhhHhhh--cCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc--------c
Q 042884 96 SLEHLNMERARIAPNTSFLQIIGE--STPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG--------S 165 (614)
Q Consensus 96 ~L~~L~l~~n~l~~~~~~~~~l~~--~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~--------~ 165 (614)
.+++++++.|.... .+|..+.. ...-++.++.+...++-+...- +..++.-++++..+++.|.... .
T Consensus 215 ~lteldls~n~~Kd--dip~~~n~~a~~~vl~~ld~s~tgirlD~l~~-~l~~g~~tkl~~~kls~ng~s~skg~Egg~~ 291 (553)
T KOG4242|consen 215 WLTELDLSTNGGKD--DIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTS-PLAAGRTTKLTFGKLSRNGTSPSKGEEGGGA 291 (553)
T ss_pred cccccccccCCCCc--cchhHHHHhhhhhhhhcccccccccchhhccc-ccccccccccchhhhccCCCCcccccccccc
Confidence 46777888877665 55544332 1234666676665554311111 1123344567777777664431 1
Q ss_pred cCccccCCCCCcEEEcccCCCCCccCCCCCCCC-----CCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccc
Q 042884 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHL-----TSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEI 240 (614)
Q Consensus 166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 240 (614)
..+.|..-.++ +|++..+....+-+...+-.+ +.=-.+++..|...+.-....-.+-.++++++.+.|...+..
T Consensus 292 ~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 292 EKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEG 370 (553)
T ss_pred cccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccc
Confidence 22334444566 666665544322221111110 111234555554442211122223345888888888776654
Q ss_pred cccccCCCCCccceeeec
Q 042884 241 TESYSLTTPNFQLQYLLL 258 (614)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l 258 (614)
.... ......+.+.+.+
T Consensus 371 ~~vg-k~~~s~s~r~l~a 387 (553)
T KOG4242|consen 371 GAVG-KRKQSKSGRILKA 387 (553)
T ss_pred cccc-ceeeccccccccc
Confidence 4333 2333344555544
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.97 E-value=0.15 Score=45.72 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCCccEEEccCC-cCCCCCccchhccccCcEEEccC
Q 042884 349 LPNLISFNISMN-ALDGSIPSSFGNINLLKILDLSN 383 (614)
Q Consensus 349 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 383 (614)
.++|+.|++++| +|+..--..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 456666666655 34443334455555666555543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.26 E-value=1.4 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=12.2
Q ss_pred CCCCCEEECCCcccCCC
Q 042884 17 LPSLNTLYLKHNNFTGT 33 (614)
Q Consensus 17 l~~L~~L~Ls~n~i~~~ 33 (614)
+++|++|+++.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45777888888877654
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.41 E-value=0.96 Score=40.71 Aligned_cols=35 Identities=17% Similarity=0.016 Sum_probs=16.9
Q ss_pred CCCEEeCCCCCCCccchHHHhhccCCcEEeccCcc
Q 042884 46 NLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYC 80 (614)
Q Consensus 46 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~ 80 (614)
.++.+|-++..|..+-...+.++..++.+.+..|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 34566666665554444444444444444444333
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.71 E-value=2.8 Score=23.92 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=7.5
Q ss_pred CCCEEEccCCcCC
Q 042884 466 HIESLDLSYNKLN 478 (614)
Q Consensus 466 ~L~~L~ls~N~l~ 478 (614)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555666666655
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=70.10 E-value=2.8 Score=52.34 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.5
Q ss_pred ECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884 447 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479 (614)
Q Consensus 447 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 479 (614)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999999999999999999999999998874
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.86 E-value=4.4 Score=23.58 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=6.5
Q ss_pred CCCEEECCCcccC
Q 042884 19 SLNTLYLKHNNFT 31 (614)
Q Consensus 19 ~L~~L~Ls~n~i~ 31 (614)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555443
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.29 E-value=24 Score=36.37 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=7.8
Q ss_pred ccEEEccCCccccccc
Q 042884 226 LKIFDAENNELNAEIT 241 (614)
Q Consensus 226 L~~L~l~~n~~~~~~~ 241 (614)
+.+++++.|.....++
T Consensus 216 lteldls~n~~Kddip 231 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIP 231 (553)
T ss_pred ccccccccCCCCccch
Confidence 4455555555444333
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.35 E-value=3.8 Score=42.78 Aligned_cols=66 Identities=30% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCCcCCEEECcCCcCCCCCC--cCCCCCCCCCEEEccCCcCCCCCcccccC--CCCCCeEeccCCcCccc
Q 042884 439 NLTRIQTLNLSHNNLTGLIP--STFSNLKHIESLDLSYNKLNGKIPHQLVE--LKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 439 ~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~ls~N~l~~~~~~~l~~--l~~L~~L~l~~N~l~~~ 504 (614)
+.+.+..++|++|++..+.. ..-...|.|+.|+|++|+..-.....+.. ...|++|-+.||++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 44667888899998865421 11234578899999999332112222332 24578888888888753
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.43 E-value=4.2 Score=42.46 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=42.8
Q ss_pred cccCCccEEEcCCCcCCccCC--ccccCCCcCCEEECcCC--cCCCCCC-cCCCCCCCCCEEEccCCcCCC
Q 042884 414 KVLSLLSGLDLSCNKLIGHIP--PQIGNLTRIQTLNLSHN--NLTGLIP-STFSNLKHIESLDLSYNKLNG 479 (614)
Q Consensus 414 ~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~ls~N~l~~ 479 (614)
...+.+..+.|++|++..... ..-...++|..|+|++| .+..... +.+.+ ..|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 345678888999999874321 11234578999999999 4432211 22333 468999999999864
No 94
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=47.23 E-value=26 Score=30.09 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=7.7
Q ss_pred ceeeeeeeeeehhhe
Q 042884 558 NFFITFTTSYVIVIF 572 (614)
Q Consensus 558 ~~~~~~~~~~~~~~~ 572 (614)
...+++++++.+.++
T Consensus 49 nIVIGvVVGVGg~il 63 (154)
T PF04478_consen 49 NIVIGVVVGVGGPIL 63 (154)
T ss_pred cEEEEEEecccHHHH
Confidence 355666666544333
No 95
>PF15102 TMEM154: TMEM154 protein family
Probab=37.72 E-value=6.6 Score=33.32 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=7.2
Q ss_pred eeehhheecccchhh
Q 042884 573 GIVVVLYVNPYWRCR 587 (614)
Q Consensus 573 ~~~~~~~~~~~~~~~ 587 (614)
++++++++++|||.|
T Consensus 74 ~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 74 SVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHheeEEeecccC
Confidence 334444455555554
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.00 E-value=35 Score=19.19 Aligned_cols=11 Identities=45% Similarity=0.498 Sum_probs=5.6
Q ss_pred CCCCEEeCCCC
Q 042884 45 TNLEYSTLSGS 55 (614)
Q Consensus 45 ~~L~~L~Ls~n 55 (614)
++|++|+++.|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 97
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=23.27 E-value=40 Score=22.58 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=8.6
Q ss_pred CcCCCCCCCC
Q 042884 523 NTFLCGLPLP 532 (614)
Q Consensus 523 n~~~c~~~~~ 532 (614)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999875
No 98
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=23.27 E-value=44 Score=27.51 Aligned_cols=12 Identities=17% Similarity=-0.072 Sum_probs=0.0
Q ss_pred hhheecccchhh
Q 042884 576 VVLYVNPYWRCR 587 (614)
Q Consensus 576 ~~~~~~~~~~~~ 587 (614)
+++++++.+|++
T Consensus 97 g~lv~rrcrrr~ 108 (129)
T PF12191_consen 97 GFLVWRRCRRRE 108 (129)
T ss_dssp ------------
T ss_pred HHHHHhhhhccc
Confidence 344444444433
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.18 E-value=32 Score=31.31 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=11.0
Q ss_pred ceeeeeeeeeehhheeeehhhee
Q 042884 558 NFFITFTTSYVIVIFGIVVVLYV 580 (614)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ 580 (614)
.+.++++.++++|+++|+++.++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHH
Confidence 44555555555544444444443
No 100
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=21.04 E-value=16 Score=34.64 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=0.0
Q ss_pred eeehhheeeehhheecccch
Q 042884 566 SYVIVIFGIVVVLYVNPYWR 585 (614)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~ 585 (614)
++++|++.|..++||++|||
T Consensus 234 SiILVLLaVGGLLfYr~rrR 253 (285)
T PF05337_consen 234 SIILVLLAVGGLLFYRRRRR 253 (285)
T ss_dssp --------------------
T ss_pred chhhhhhhccceeeeccccc
Confidence 33444444555555544443
No 101
>PF15050 SCIMP: SCIMP protein
Probab=20.48 E-value=5.9 Score=31.90 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=17.1
Q ss_pred eeeeeeeeeehhheeeehhheecccchhhhhh
Q 042884 559 FFITFTTSYVIVIFGIVVVLYVNPYWRCRWFY 590 (614)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (614)
+++.++++++++.+++..++|..+||..|.-.
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45555555555555555555555666665433
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.34 E-value=5.4 Score=32.99 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=8.8
Q ss_pred eeeeeehhheeeehhheeccc
Q 042884 563 FTTSYVIVIFGIVVVLYVNPY 583 (614)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~ 583 (614)
+++++++++++++++++|..|
T Consensus 69 Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
Done!