Query 042884
Match_columns 614
No_of_seqs 531 out of 4057
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-61 1.3E-65 539.3 41.1 512 10-540 116-754 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.3E-57 2.8E-61 504.0 33.0 496 12-530 94-721 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 1E-55 3.5E-60 500.2 33.7 512 6-553 15-607 (844)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-54 1.1E-58 478.8 43.1 507 7-531 16-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.9E-54 9.7E-59 472.9 39.6 501 6-531 23-565 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-53 1.5E-57 463.4 37.0 495 6-532 22-564 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.5E-50 1.9E-54 444.8 44.8 486 21-526 7-573 (680)
8 3t6q_A CD180 antigen; protein- 100.0 3.6E-50 1.2E-54 440.3 35.5 477 7-506 45-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-50 1.3E-54 454.7 32.7 468 7-506 36-564 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 6.9E-49 2.4E-53 427.2 31.6 497 7-532 19-537 (570)
11 3vq2_A TLR4, TOLL-like recepto 100.0 6.6E-49 2.2E-53 430.3 28.7 508 7-552 44-603 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-48 9.5E-53 420.3 26.3 475 7-530 17-514 (549)
13 4g8a_A TOLL-like receptor 4; l 100.0 9.3E-46 3.2E-50 408.0 34.7 514 7-548 43-621 (635)
14 2z63_A TOLL-like receptor 4, v 100.0 6.7E-45 2.3E-49 395.8 30.7 474 7-507 40-536 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-45 5.9E-50 395.5 24.0 452 6-506 11-485 (520)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-44 3.9E-49 389.1 30.3 460 21-531 3-486 (520)
17 4eco_A Uncharacterized protein 100.0 1.4E-44 4.9E-49 395.8 27.4 439 18-505 81-603 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-43 3.9E-48 384.1 32.0 455 8-506 39-514 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 1.8E-43 6.2E-48 393.1 29.6 387 105-530 435-870 (876)
20 4eco_A Uncharacterized protein 100.0 1.2E-43 4.2E-48 388.3 27.0 435 70-529 82-603 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 1.3E-43 4.6E-48 394.1 24.7 445 18-503 323-865 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-42 9.5E-47 373.6 29.5 462 16-531 29-515 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-42 6.1E-47 375.1 26.0 452 6-506 42-514 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.1E-39 3.9E-44 344.2 32.4 373 98-530 13-412 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-39 5.6E-44 358.1 34.0 500 5-532 62-612 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 5.3E-38 1.8E-42 331.5 33.4 378 73-507 14-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 9.9E-38 3.4E-42 326.8 29.1 403 16-528 9-431 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 6.9E-38 2.4E-42 327.9 24.8 401 5-512 21-439 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 9.2E-37 3.1E-41 323.8 29.7 347 98-530 14-360 (477)
30 1o6v_A Internalin A; bacterial 100.0 1.5E-35 5.1E-40 313.1 34.7 342 94-504 45-390 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 2.5E-36 8.7E-41 320.4 28.2 325 125-531 14-338 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 6.7E-36 2.3E-40 313.2 26.5 357 13-508 37-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 1.2E-34 4.1E-39 306.2 33.4 345 17-479 45-389 (466)
34 3o6n_A APL1; leucine-rich repe 100.0 1.4E-34 4.8E-39 298.6 26.5 335 94-530 44-378 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1E-33 3.5E-38 296.6 27.6 355 91-531 38-392 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 6.7E-34 2.3E-38 293.5 23.0 318 148-534 43-360 (390)
37 4fmz_A Internalin; leucine ric 100.0 5.7E-33 1.9E-37 282.0 29.4 304 121-502 43-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 2.5E-33 8.5E-38 305.0 26.6 335 94-530 50-384 (597)
39 4fmz_A Internalin; leucine ric 100.0 5.5E-32 1.9E-36 274.7 30.5 308 90-478 39-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 7.1E-33 2.4E-37 301.5 25.0 313 150-531 51-363 (597)
41 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-33 1E-37 279.0 17.8 252 277-534 51-312 (313)
42 1xku_A Decorin; proteoglycan, 100.0 2.3E-30 7.9E-35 260.6 29.6 200 276-500 121-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-30 5.2E-35 262.2 27.3 288 151-500 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 2.3E-30 8E-35 260.6 26.3 251 95-393 31-281 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-30 7.5E-35 261.0 25.0 251 96-395 34-284 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 5.7E-34 1.9E-38 301.2 -7.3 366 95-502 3-411 (461)
47 3zyj_A Leucine-rich repeat-con 100.0 2.5E-29 8.5E-34 263.4 25.1 266 278-551 45-335 (440)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-33 1.3E-37 294.9 -6.2 119 91-212 52-183 (461)
49 3zyi_A Leucine-rich repeat-con 100.0 2.4E-29 8.2E-34 264.5 22.0 226 276-503 75-304 (452)
50 1ogq_A PGIP-2, polygalacturona 100.0 3.5E-30 1.2E-34 256.7 13.5 208 272-503 97-305 (313)
51 2z66_A Variable lymphocyte rec 100.0 2.6E-28 8.9E-33 242.9 19.4 246 279-531 10-266 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 5E-28 1.7E-32 245.9 20.4 217 272-506 96-318 (353)
53 3ogk_B Coronatine-insensitive 100.0 6.7E-30 2.3E-34 278.8 5.9 436 11-499 66-548 (592)
54 3zyj_A Leucine-rich repeat-con 100.0 1.7E-27 5.9E-32 249.4 22.1 229 276-506 64-296 (440)
55 2z80_A TOLL-like receptor 2, v 100.0 5.8E-28 2E-32 245.4 15.7 252 276-530 52-318 (353)
56 2z66_A Variable lymphocyte rec 100.0 8.1E-28 2.8E-32 239.4 15.7 249 276-528 28-289 (306)
57 3ogk_B Coronatine-insensitive 99.9 1.7E-29 5.9E-34 275.6 3.4 376 93-504 110-528 (592)
58 1ozn_A Reticulon 4 receptor; N 99.9 6.3E-27 2.2E-31 230.3 20.2 222 279-506 14-242 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 7.9E-31 241.7 24.1 242 201-479 56-304 (452)
60 4fcg_A Uncharacterized protein 99.9 2E-26 6.7E-31 231.0 21.7 225 275-525 80-313 (328)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-26 4.3E-31 228.1 18.8 231 276-510 32-269 (285)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1E-25 3.5E-30 242.7 27.2 188 276-513 121-308 (622)
63 4fcg_A Uncharacterized protein 99.9 1E-25 3.5E-30 225.7 19.5 212 267-502 95-314 (328)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-27 5.9E-32 237.9 6.0 237 274-527 32-276 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-25 2.2E-29 236.6 26.4 269 122-489 40-308 (622)
66 2o6q_A Variable lymphocyte rec 99.9 4.3E-25 1.5E-29 215.2 21.9 207 301-530 16-222 (270)
67 1wwl_A Monocyte differentiatio 99.9 4.4E-27 1.5E-31 234.4 6.3 239 252-502 44-309 (312)
68 1wwl_A Monocyte differentiatio 99.9 1.9E-26 6.7E-31 229.7 10.4 245 271-527 38-310 (312)
69 1p9a_G Platelet glycoprotein I 99.9 5.7E-25 1.9E-29 216.2 19.6 208 297-531 6-213 (290)
70 3oja_A Leucine-rich immune mol 99.9 4.4E-26 1.5E-30 240.9 12.3 228 269-530 51-286 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.8E-31 231.3 7.5 261 96-408 11-271 (317)
72 2z62_A TOLL-like receptor 4, v 99.9 2.9E-25 9.8E-30 217.4 16.6 209 276-506 28-241 (276)
73 2p1m_B Transport inhibitor res 99.9 2.3E-27 7.9E-32 258.9 -0.3 375 93-502 103-519 (594)
74 2o6q_A Variable lymphocyte rec 99.9 5.5E-24 1.9E-28 207.4 22.9 207 276-506 16-222 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 3.5E-24 1.2E-28 209.7 19.7 227 280-531 11-242 (276)
76 3oja_A Leucine-rich immune mol 99.9 3E-25 1E-29 234.5 11.4 170 276-497 99-270 (487)
77 2p1m_B Transport inhibitor res 99.9 9.8E-28 3.3E-32 261.9 -8.1 427 13-500 61-542 (594)
78 1p9a_G Platelet glycoprotein I 99.9 2.4E-23 8.3E-28 204.5 18.8 206 272-505 6-211 (290)
79 3rfs_A Internalin B, repeat mo 99.9 5E-23 1.7E-27 200.7 17.4 208 273-512 38-245 (272)
80 3m19_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 191.6 19.6 181 301-504 14-194 (251)
81 3rfs_A Internalin B, repeat mo 99.9 2E-22 6.9E-27 196.4 17.1 204 277-507 20-223 (272)
82 4glp_A Monocyte differentiatio 99.9 1.6E-22 5.4E-27 201.2 16.0 221 276-502 64-307 (310)
83 3m19_A Variable lymphocyte rec 99.9 7.9E-22 2.7E-26 189.8 19.2 180 277-480 15-194 (251)
84 2xwt_C Thyrotropin receptor; s 99.9 4.9E-22 1.7E-26 189.8 14.4 85 302-387 32-118 (239)
85 1h6u_A Internalin H; cell adhe 99.9 2E-21 7E-26 192.7 18.0 193 274-503 39-231 (308)
86 2xwt_C Thyrotropin receptor; s 99.9 5.8E-22 2E-26 189.4 13.2 205 266-500 24-237 (239)
87 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6E-27 205.5 10.2 243 264-506 10-301 (362)
88 3goz_A Leucine-rich repeat-con 99.9 1.6E-22 5.6E-27 205.8 8.2 248 280-528 2-299 (362)
89 4ay9_X Follicle-stimulating ho 99.9 1.2E-21 4.1E-26 198.3 14.0 239 279-528 12-260 (350)
90 4ay9_X Follicle-stimulating ho 99.9 1.3E-20 4.5E-25 190.7 18.7 206 125-394 12-221 (350)
91 4glp_A Monocyte differentiatio 99.9 2.1E-21 7.2E-26 193.1 12.6 223 299-527 62-308 (310)
92 2ca6_A RAN GTPase-activating p 99.8 1.5E-22 5.1E-27 208.2 3.0 239 267-506 23-320 (386)
93 2v9t_B SLIT homolog 2 protein 99.8 5.7E-21 1.9E-25 179.5 13.5 154 328-504 14-167 (220)
94 1h6u_A Internalin H; cell adhe 99.8 1.7E-20 5.7E-25 186.1 17.1 207 282-527 25-231 (308)
95 2ca6_A RAN GTPase-activating p 99.8 1.2E-22 3.9E-27 209.0 1.4 238 291-529 23-319 (386)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 9.1E-21 3.1E-25 178.1 12.5 156 328-506 14-170 (220)
97 2ast_B S-phase kinase-associat 99.8 6.3E-21 2.1E-25 192.2 11.7 240 277-528 48-308 (336)
98 2ast_B S-phase kinase-associat 99.8 9.4E-22 3.2E-26 198.3 5.6 229 276-511 70-315 (336)
99 2xot_A Amphoterin-induced prot 99.8 1E-20 3.5E-25 192.2 13.1 178 329-529 22-205 (361)
100 3cvr_A Invasion plasmid antige 99.8 3.8E-20 1.3E-24 196.9 15.8 165 326-513 81-254 (571)
101 2o6s_A Variable lymphocyte rec 99.8 2E-19 6.7E-24 167.8 14.8 179 304-512 10-188 (208)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-19 1.4E-23 166.7 15.7 158 353-531 14-171 (220)
103 2o6s_A Variable lymphocyte rec 99.8 4.2E-19 1.5E-23 165.5 14.8 181 279-490 10-190 (208)
104 3e6j_A Variable lymphocyte rec 99.8 6.9E-19 2.4E-23 166.4 16.2 157 326-506 20-176 (229)
105 1h6t_A Internalin B; cell adhe 99.8 8.6E-19 3E-23 172.2 16.5 190 278-504 26-215 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 8E-19 2.7E-23 164.8 15.5 157 353-531 14-170 (220)
107 1w8a_A SLIT protein; signaling 99.8 1.4E-18 4.7E-23 159.5 14.5 154 377-552 11-181 (192)
108 2wfh_A SLIT homolog 2 protein 99.8 1.1E-18 3.6E-23 160.2 13.0 151 377-550 13-179 (193)
109 2xot_A Amphoterin-induced prot 99.8 9.8E-19 3.3E-23 177.6 13.2 160 326-505 40-205 (361)
110 3cvr_A Invasion plasmid antige 99.8 2.6E-18 9E-23 182.7 14.9 186 277-489 60-254 (571)
111 1m9s_A Internalin B; cell inva 99.8 1.2E-17 4.2E-22 179.6 18.4 189 279-504 24-212 (605)
112 1h6t_A Internalin B; cell adhe 99.7 7.6E-18 2.6E-22 165.4 14.4 173 272-479 42-214 (291)
113 3e6j_A Variable lymphocyte rec 99.7 5.4E-17 1.8E-21 153.4 17.0 155 278-481 21-175 (229)
114 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.9E-22 179.9 13.9 188 124-363 23-210 (605)
115 3sb4_A Hypothetical leucine ri 99.7 5.7E-18 1.9E-22 169.7 10.7 264 94-406 48-328 (329)
116 1xeu_A Internalin C; cellular 99.7 5E-18 1.7E-22 164.0 9.9 168 302-504 20-187 (263)
117 3sb4_A Hypothetical leucine ri 99.7 1E-17 3.5E-22 167.9 9.2 287 44-381 24-328 (329)
118 1w8a_A SLIT protein; signaling 99.7 3.7E-17 1.3E-21 149.9 12.0 85 422-506 59-143 (192)
119 4ezg_A Putative uncharacterize 99.7 9.3E-17 3.2E-21 148.0 12.6 153 322-502 41-194 (197)
120 4fdw_A Leucine rich hypothetic 99.7 2E-15 6.9E-20 154.4 22.3 201 274-502 178-383 (401)
121 4fs7_A Uncharacterized protein 99.7 1E-15 3.4E-20 157.4 19.8 313 140-499 61-376 (394)
122 2o6r_A Variable lymphocyte rec 99.7 2.6E-16 8.9E-21 142.4 13.4 133 376-530 9-141 (177)
123 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.3E-21 146.0 11.9 150 349-525 43-193 (197)
124 1xeu_A Internalin C; cellular 99.7 1.2E-16 4.2E-21 154.2 11.2 170 275-480 18-187 (263)
125 1dce_A Protein (RAB geranylger 99.7 7.8E-19 2.7E-23 187.9 -6.5 178 322-505 346-549 (567)
126 4fdw_A Leucine rich hypothetic 99.7 5E-15 1.7E-19 151.5 21.6 265 94-411 112-382 (401)
127 1dce_A Protein (RAB geranylger 99.7 1.8E-18 6.1E-23 185.1 -4.6 197 273-496 346-567 (567)
128 4b8c_D Glucose-repressible alc 99.6 6.5E-17 2.2E-21 178.5 5.6 181 268-454 216-404 (727)
129 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7.3E-20 138.1 14.2 130 354-506 14-143 (193)
130 4b8c_D Glucose-repressible alc 99.6 6.2E-17 2.1E-21 178.7 2.9 175 317-502 216-404 (727)
131 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.5E-20 135.0 11.3 134 349-503 23-161 (168)
132 4fs7_A Uncharacterized protein 99.6 4E-14 1.4E-18 145.4 21.3 329 89-494 65-393 (394)
133 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 131.2 13.9 82 425-506 60-141 (177)
134 3g39_A Variable lymphocyte rec 99.6 1.1E-14 3.6E-19 130.5 11.6 106 401-506 11-119 (170)
135 2ell_A Acidic leucine-rich nuc 99.6 1.8E-14 6E-19 129.0 12.5 133 275-412 23-160 (168)
136 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 130.1 7.2 127 350-497 17-148 (149)
137 3g39_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 127.8 12.2 110 418-530 10-119 (170)
138 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6.2E-19 126.1 10.5 129 275-408 16-149 (149)
139 2r9u_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 127.7 11.7 104 402-505 15-121 (174)
140 2r9u_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 125.1 12.2 109 419-530 14-122 (174)
141 1a9n_A U2A', U2A'; complex (nu 99.5 9.9E-14 3.4E-18 125.1 11.0 134 272-412 15-153 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.5 5.3E-14 1.8E-18 126.9 9.1 130 349-502 18-153 (176)
143 1ds9_A Outer arm dynein; leuci 99.4 9.9E-16 3.4E-20 141.2 -5.7 132 344-502 43-185 (198)
144 4gt6_A Cell surface protein; l 99.4 5.6E-12 1.9E-16 129.4 21.3 102 123-233 65-169 (394)
145 4gt6_A Cell surface protein; l 99.4 6.5E-12 2.2E-16 128.9 21.7 330 89-501 57-390 (394)
146 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7.1E-20 139.1 -6.5 151 349-525 17-184 (198)
147 2ifg_A High affinity nerve gro 99.4 9.3E-13 3.2E-17 132.8 9.6 85 418-503 32-117 (347)
148 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.2E-17 131.9 9.9 105 423-530 14-120 (347)
149 3un9_A NLR family member X1; l 99.3 1.7E-13 5.7E-18 138.8 -0.6 165 325-503 72-253 (372)
150 4h09_A Hypothetical leucine ri 99.2 1.5E-09 5.1E-14 110.7 21.8 53 434-488 303-355 (379)
151 3un9_A NLR family member X1; l 99.2 1.9E-12 6.6E-17 130.9 -0.1 142 325-480 101-254 (372)
152 4h09_A Hypothetical leucine ri 99.1 4.4E-09 1.5E-13 107.2 22.9 151 324-499 193-343 (379)
153 2ra8_A Uncharacterized protein 98.8 2.9E-09 1E-13 106.6 3.9 63 440-502 251-320 (362)
154 2ra8_A Uncharacterized protein 98.5 2.5E-08 8.4E-13 99.9 3.1 191 10-210 131-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 1.2E-08 4.2E-13 92.1 -1.0 92 95-187 65-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 9.8E-08 3.4E-12 86.1 3.3 120 91-212 32-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.6E-12 89.0 1.2 66 439-506 168-237 (267)
158 3rw6_A Nuclear RNA export fact 98.2 2.4E-07 8.3E-12 87.8 1.4 80 414-495 167-257 (267)
159 3rfe_A Platelet glycoprotein I 98.1 5.9E-06 2E-10 69.2 6.7 59 444-504 11-70 (130)
160 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.3E-11 74.6 2.0 94 9-106 52-150 (176)
161 3e4g_A ATP synthase subunit S, 97.8 3.3E-06 1.1E-10 74.1 -0.2 83 418-500 62-150 (176)
162 3rfe_A Platelet glycoprotein I 97.2 0.00073 2.5E-08 56.3 7.3 61 469-531 12-73 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 5.7E-05 2E-09 67.5 -2.2 90 95-185 70-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00067 2.3E-08 60.6 3.9 118 93-212 39-170 (197)
165 2lz0_A Uncharacterized protein 70.3 5.5 0.00019 30.7 4.5 44 163-208 9-52 (100)
166 2lz0_A Uncharacterized protein 62.4 12 0.00042 28.7 5.1 45 453-498 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-61 Score=539.30 Aligned_cols=512 Identities=30% Similarity=0.432 Sum_probs=389.5
Q ss_pred ccc--ccCCCCCCCEEECCCcccCCCCCCCCc-c-cCCCCCCCEEeCCCCCCCccchHH---HhhccCCcEEeccCcccc
Q 042884 10 LLQ--SMGSLPSLNTLYLKHNNFTGTATTTTQ-E-LHNFTNLEYSTLSGSSLHISLLQS---IASLFPSLKNLSMSYCEV 82 (614)
Q Consensus 10 l~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~-l~~l~~L~~L~Ls~n~~~~~~~~~---~~~l~~l~~l~l~~~~~~ 82 (614)
+|. .++++++|++|+|++|.+++. .+ . +.++++|++|++++|.+.+..+.. +.++++|+++++.+|.+.
T Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 191 (768)
T 3rgz_A 116 VTTLTSLGSCSGLKFLNVSSNTLDFP----GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191 (768)
T ss_dssp GGGGGGGGGCTTCCEEECCSSEEECC----SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEE
T ss_pred CCChHHHhCCCCCCEEECcCCccCCc----CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccc
Confidence 455 667777777777777777654 33 2 367788888888888877666655 455555555555555544
Q ss_pred CCccCC-------------------CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCc
Q 042884 83 NGVVRG-------------------QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILD 143 (614)
Q Consensus 83 ~~~~~~-------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~ 143 (614)
+..+.. ..++++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+.+ .++.
T Consensus 192 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~-l~~L~~L~Ls~n~l~~---~~~~ 265 (768)
T 3rgz_A 192 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG--DFSRAIST-CTELKLLNISSNQFVG---PIPP 265 (768)
T ss_dssp SCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS--CHHHHTTT-CSSCCEEECCSSCCEE---SCCC
T ss_pred ccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC--cccHHHhc-CCCCCEEECCCCcccC---ccCc
Confidence 332210 025555555555555555554 45555555 5566666666555543 2222
Q ss_pred hhhcCCCCCCeEECcCCccccccCccccCC-CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccC
Q 042884 144 RGLCSLMHLQELYKVNNDLRGSLPWCVANM-TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFN 222 (614)
Q Consensus 144 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 222 (614)
. .+++|++|++++|++++.+|..+... ++|++|++++|.+.+.+|.. |+.+++|++|++++|.+.+.++...+..
T Consensus 266 --~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~ 341 (768)
T 3rgz_A 266 --L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLK 341 (768)
T ss_dssp --C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred --c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhc
Confidence 1 44555555555555555566555553 66777777777666555543 6667777777777777766666555667
Q ss_pred CCCccEEEccCCcccccccccccCCC------------------------CCccceeeeccCCCCCCCCCCccccCCCCC
Q 042884 223 HSRLKIFDAENNELNAEITESYSLTT------------------------PNFQLQYLLLSSGYGDGATFPKFLYHQHDL 278 (614)
Q Consensus 223 l~~L~~L~l~~n~~~~~~~~~~~~~~------------------------~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L 278 (614)
+++|++|++++|.+.+..+..+.... +..+|++|++ .++...+.+|..+..+++|
T Consensus 342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L-~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC-CSSEEEEECCGGGGGCTTC
T ss_pred CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC-CCCccccccCHHHhcCCCC
Confidence 77777777777766644443322111 1346788888 6666667788889999999
Q ss_pred cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884 279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358 (614)
Q Consensus 279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~ 358 (614)
++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|++|+++
T Consensus 421 ~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~ 498 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLS 498 (768)
T ss_dssp CEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECC
T ss_pred CEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEcc
Confidence 99999999998888877 788999999999999999888888999999999999999999888887766 8999999999
Q ss_pred CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccc-----------------------
Q 042884 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKV----------------------- 415 (614)
Q Consensus 359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----------------------- 415 (614)
+|++++.+|..++.+++|++|++++|++++.+|..+ ..+++|++|++++|++++..
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 999999999999999999999999999998888776 68999999999999886421
Q ss_pred -----------------------------------------------------cCCccEEEcCCCcCCccCCccccCCCc
Q 042884 416 -----------------------------------------------------LSLLSGLDLSCNKLIGHIPPQIGNLTR 442 (614)
Q Consensus 416 -----------------------------------------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~ 442 (614)
+++|+.|+|++|++++.+|..++.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 246889999999999999999999999
Q ss_pred CCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccC
Q 042884 443 IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEG 522 (614)
Q Consensus 443 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~ 522 (614)
|+.|+|++|++++.+|..++++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|. ..++.++....+.|
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLN 736 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCS
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 56788889999999
Q ss_pred CcCCCCCCCCCCCCCCCC
Q 042884 523 NTFLCGLPLPICRSPATT 540 (614)
Q Consensus 523 n~~~c~~~~~~c~~~~~~ 540 (614)
||.+|+.|+..|......
T Consensus 737 N~~Lcg~~l~~C~~~~~~ 754 (768)
T 3rgz_A 737 NPGLCGYPLPRCDPSNAD 754 (768)
T ss_dssp CTEEESTTSCCCCSCC--
T ss_pred CchhcCCCCcCCCCCccC
Confidence 999999998888665443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.3e-57 Score=504.04 Aligned_cols=496 Identities=28% Similarity=0.355 Sum_probs=329.2
Q ss_pred cccCCCCCCCEEECCCcccCCCCCCCCc--ccCCCCCCCEEeCCCCCCCccchHHH-hhccCCcEEeccCccccCCccCC
Q 042884 12 QSMGSLPSLNTLYLKHNNFTGTATTTTQ--ELHNFTNLEYSTLSGSSLHISLLQSI-ASLFPSLKNLSMSYCEVNGVVRG 88 (614)
Q Consensus 12 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~l~~l~l~~~~~~~~~~~~ 88 (614)
+.|+++++|++|||++|.+++.. .+ .++.+++|++|++++|.+.+..|..+ ..+++|+++++++|.+.+..+..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPV---TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEG---GGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcC---CChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 34444445555555554444320 11 34444455555555444443333332 34444555555444444322210
Q ss_pred -CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC
Q 042884 89 -QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP 167 (614)
Q Consensus 89 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~ 167 (614)
..+.++++|++|++++|.+.+ ..+. .. +++|++|++++|.+.+ .++. +.++++|++|++++|++++..|
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~--~~~~--~~-l~~L~~L~Ls~n~l~~---~~~~--l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISG--DVDV--SR-CVNLEFLDVSSNNFST---GIPF--LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEES--CCBC--TT-CTTCCEEECCSSCCCS---CCCB--CTTCCSCCEEECCSSCCCSCHH
T ss_pred hhhhccCCCCCEEECCCCcccc--cCCc--cc-CCcCCEEECcCCcCCC---CCcc--cccCCCCCEEECcCCcCCCccc
Confidence 003444444444444444433 1111 33 7788888888888774 3333 7778888888888888887777
Q ss_pred ccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCc------------------------ccccCC
Q 042884 168 WCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISL------------------------EPLFNH 223 (614)
Q Consensus 168 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------------------------~~~~~l 223 (614)
.++.++++|++|++++|.+.+.+|.. .+++|++|++++|.+.+.++. ..+..+
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred HHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 77888877877777777776544431 445555555555555443332 234455
Q ss_pred CCccEEEccCCccccccccc-ccCCCCCccceeeeccCCCCCCCCCCccccC---------------------------C
Q 042884 224 SRLKIFDAENNELNAEITES-YSLTTPNFQLQYLLLSSGYGDGATFPKFLYH---------------------------Q 275 (614)
Q Consensus 224 ~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~---------------------------l 275 (614)
++|++|++++|.+.+..+.. +. ...+|++|++ .++...+.+|..+.. +
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~---~l~~L~~L~L-s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLL---KMRGLKVLDL-SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHT---TCTTCCEEEC-CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CCccEEECCCCcccCcCCHHHHh---cCCCCCEEeC-cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 55555555555554332221 22 1234555555 333333333333322 4
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.+|..+.. +++|++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L 471 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETL 471 (768)
T ss_dssp CCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEE
T ss_pred CCccEEECCCCccccccCHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEE
Confidence 45555555555555555555 567777888888888877777777777888888888888887777776665 7888888
Q ss_pred EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcC
Q 042884 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKL 429 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l 429 (614)
++++|++++..|..+..+++|++|++++|++++.+|..+ ..+++|++|++++|++++. .+++|+.|++++|++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 888888888888888888888888888888887777765 6788888888888888763 357788999999988
Q ss_pred CccCCccc----------------------------------------------------------------------cC
Q 042884 430 IGHIPPQI----------------------------------------------------------------------GN 439 (614)
Q Consensus 430 ~~~~~~~~----------------------------------------------------------------------~~ 439 (614)
++.+|..+ ..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 76666433 33
Q ss_pred CCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCccc
Q 042884 440 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESS 519 (614)
Q Consensus 440 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~ 519 (614)
+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|+.+..+++|++|||++|++++.+|..+..++.++.++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred ccCCcCCCCCC
Q 042884 520 YEGNTFLCGLP 530 (614)
Q Consensus 520 ~~~n~~~c~~~ 530 (614)
+++|+.....|
T Consensus 711 ls~N~l~g~iP 721 (768)
T 3rgz_A 711 LSNNNLSGPIP 721 (768)
T ss_dssp CCSSEEEEECC
T ss_pred CcCCcccccCC
Confidence 99998765443
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-55 Score=500.19 Aligned_cols=512 Identities=18% Similarity=0.182 Sum_probs=371.1
Q ss_pred cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccc-hHHHhhccCCcEEeccCccccC
Q 042884 6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISL-LQSIASLFPSLKNLSMSYCEVN 83 (614)
Q Consensus 6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~l~~l~l~~~~~~~ 83 (614)
..+.+|. ..+++++|||++|.|+++ .+ .|..+++|++|++++|...+.+ +..+.++++|++|++++|.+.+
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~i----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRTV----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCEE----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCC---CCCCcCEEECCCCcCCcc----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 3566775 458999999999999887 44 8999999999999999665555 7789999999999999999876
Q ss_pred CccCCCCCCCCCCCCEEeCcCcccCCCcchhhH--hhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCc
Q 042884 84 GVVRGQGFPHFKSLEHLNMERARIAPNTSFLQI--IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNND 161 (614)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~ 161 (614)
..| ..|.++++|++|++++|.+.+ .++.. +.. +++|++|++++|.+++ ..++..|+++++|++|++++|.
T Consensus 88 ~~p--~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~-L~~L~~L~Ls~N~l~~---~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 88 LHP--DAFQGLFHLFELRLYFCGLSD--AVLKDGYFRN-LKALTRLDLSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp ECT--TSSCSCSSCCCEECTTCCCSS--CCSTTCCCSS-CSSCCEEEEESCCCCC---CCCCGGGGTCSSCCEEEEESSC
T ss_pred cCH--hHccCCcccCEeeCcCCCCCc--ccccCccccc-cCCCCEEECCCCcccc---cccchhHhhCCCCCEEECCCCc
Confidence 545 479999999999999999985 45544 666 9999999999999985 4444479999999999999999
Q ss_pred cccccCccccCC--CCCcEEEcccCCCCCccCCCCCCCCCC------CCEEEcccCcCccccCcccc-------------
Q 042884 162 LRGSLPWCVANM--TSLRILDVSSNQLTGSIASSPLAHLTS------IEELHLSDNHFRIPISLEPL------------- 220 (614)
Q Consensus 162 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~------L~~L~L~~n~~~~~~~~~~~------------- 220 (614)
+++..+..+..+ ++|+.|++++|.+.+..|.. +..+++ |++|++++|.+.+..+....
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 999899999887 89999999999998766654 444444 99999999977644332111
Q ss_pred ----------------------cC--CCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCC
Q 042884 221 ----------------------FN--HSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQH 276 (614)
Q Consensus 221 ----------------------~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~ 276 (614)
.+ .++|+.|++++|.+.+..+..+..+ .+|+.|++ .++.+.+..|..+..++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L-~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL---KDLKVLNL-AYNKINKIADEAFYGLD 314 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC---CCCCEEEE-ESCCCCEECTTTTTTCS
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC---CCCCEEEC-CCCcCCCCChHHhcCCC
Confidence 11 1345555555555554443333322 25555555 34444444444555555
Q ss_pred CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 356 (614)
+|++|++++|.+.+..|.. |..+++|++|++++|.+..+.+..|..+++|+.|++++|.++ .++. +++|+.|+
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~ 387 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIF 387 (844)
T ss_dssp SCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEE
T ss_pred CCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhc
Confidence 5555555555555333332 455555555555555555555555555555555555555554 2321 44555555
Q ss_pred ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcCCCcC
Q 042884 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKL 429 (614)
Q Consensus 357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~~n~l 429 (614)
+++|+++. +|.. ..+++.|++++|++++.-....+..+++|+.|++++|++++ ..+++|+.|++++|.+
T Consensus 388 l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 388 LSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp EESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred cCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 55555552 2221 34566777777777632222334588999999999999875 2357899999999999
Q ss_pred C-----ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884 430 I-----GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 430 ~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
+ +..+..|.++++|++|+|++|++++.+|..|.++++|++|+|++|++++..|..+. ++|+.|++++|++++.
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred ccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 7 44556789999999999999999999999999999999999999999987777765 8999999999999998
Q ss_pred CCccccccCCcCcccccCCcCCCCCCCC--------------------CCCCCCCCCCCCCCCCCCCCc
Q 042884 505 IPEWKAQFATFNESSYEGNTFLCGLPLP--------------------ICRSPATTPEASIGNERDDNL 553 (614)
Q Consensus 505 ~~~~~~~~~~l~~~~~~~n~~~c~~~~~--------------------~c~~~~~~~~~~~~~~~~~~~ 553 (614)
.|..+ .+++.+++++|||.|+|+.. .|..|....+.+........|
T Consensus 542 ~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 542 NPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607 (844)
T ss_dssp CSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred ChhHh---CCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence 88754 57889999999999999752 588777766666655554444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-54 Score=478.81 Aligned_cols=507 Identities=19% Similarity=0.148 Sum_probs=352.0
Q ss_pred CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884 7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV 85 (614)
Q Consensus 7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 85 (614)
.+++|..+. +++++|++++|.++++ .+ .|.++++|++|++++|.+.+..|..+.++++|+++++++|.+. .+
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l 88 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQLRRL----PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QL 88 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSCCCCC----CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CC
T ss_pred ccccccccC--CCCcEEECCCCCCCCc----CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-cc
Confidence 345665544 6777777777777766 34 5777777777777777777666777777777777777777655 34
Q ss_pred cCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884 86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS 165 (614)
Q Consensus 86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~ 165 (614)
|. ..|+++++|++|++++|.+.+ ..+..+.. +++|++|++++|.+++ +++..+.++++|++|++++|.+++.
T Consensus 89 ~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 89 SD-KTFAFCTNLTELHLMSNSIQK--IKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CT-TTTTTCTTCSEEECCSSCCCC--CCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred Ch-hhhccCCCCCEEECCCCccCc--cChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCEEEccCCccccc
Confidence 43 257777777777777777653 22344555 7777777777777663 3333566666666666666666654
Q ss_pred cCcccc--CCCCCcEEEcccCCCCCccCC--------------------------------------------------C
Q 042884 166 LPWCVA--NMTSLRILDVSSNQLTGSIAS--------------------------------------------------S 193 (614)
Q Consensus 166 ~~~~~~--~l~~L~~L~L~~n~l~~~~~~--------------------------------------------------~ 193 (614)
.+..+. .+++|++|++++|.+.+..|. .
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 444432 335555555555555422221 1
Q ss_pred CCCCCC--CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCC-----------------------
Q 042884 194 PLAHLT--SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT----------------------- 248 (614)
Q Consensus 194 ~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----------------------- 248 (614)
.|..++ +|++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..+....
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred HhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 233332 26666666666653 2334566667777777777766655444333211
Q ss_pred -------CCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC-CCChhHHhcC--CCccEEEccCCCCCCCCC
Q 042884 249 -------PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG-EFPNWLLENN--TKLKTLFLVNDSLAGPFR 318 (614)
Q Consensus 249 -------~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~--~~L~~L~l~~n~i~~~~~ 318 (614)
...+|++|++ .++...+..+..+..+++|++|++++|.+.. .++...|..+ ++|+.|++++|++.++.+
T Consensus 320 i~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNM-EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp ECTTTTTTCTTCCEEEC-CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred cChhhcccCCCCCEEEC-CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 1234444444 3333334444445555555555555554321 1222222222 356666667777777777
Q ss_pred CCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccC--CcCCchhhc
Q 042884 319 LPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT--GEIPEHLAV 396 (614)
Q Consensus 319 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~ 396 (614)
..|..+++|+.|++++|.+.+.+|...+..+++|++|++++|++.+..+..|..+++|+.|++++|.+. +.+|.. +.
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~ 477 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQ 477 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-cc
Confidence 788888899999999999887777666666889999999999988888888888999999999999876 345554 47
Q ss_pred cCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCccCC--------ccccCCCcCCEEECcCCcCCCCCCcCCC
Q 042884 397 GCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIGHIP--------PQIGNLTRIQTLNLSHNNLTGLIPSTFS 462 (614)
Q Consensus 397 ~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 462 (614)
.+++|++|++++|++++. .+++|++|++++|++++..+ ..|.++++|++|+|++|+++.+.+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 899999999999998863 35789999999999986422 2378899999999999999987778899
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccc-ccCCcCcccccCCcCCCCCCC
Q 042884 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKA-QFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 463 ~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~~~~~~n~~~c~~~~ 531 (614)
++++|+.|++++|+++++.+..|..+++|+.|++++|++++..+..+. .+++++.+++++|||.|+|+.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999999988888889999999999999999988877676 789999999999999999985
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-54 Score=472.89 Aligned_cols=501 Identities=19% Similarity=0.159 Sum_probs=425.4
Q ss_pred cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
+.+++|..+. +++++|++++|.|+++ .+ .|.++++|++|++++|.+....|..+.++++|+++++++|.+.+.
T Consensus 23 ~l~~iP~~l~--~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 23 GLNEIPGTLP--NSTECLEFSFNVLPTI----QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp CCSSCCTTSC--TTCCEEECTTCCCSEE----CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CcccCcCCCC--CcCcEEEccCCccCcC----ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc
Confidence 3457777665 4899999999999987 45 899999999999999999988899999999999999999988754
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG 164 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~ 164 (614)
.| ..|+++++|++|++++|.+.. ..+..+.. +++|++|++++|.+. .++...+..+++|++|++++|.+++
T Consensus 97 ~~--~~~~~l~~L~~L~L~~n~i~~--l~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 97 AE--TALSGPKALKHLFFIQTGISS--IDFIPLHN-QKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CT--TTTSSCTTCCEEECTTSCCSC--GGGSCCTT-CTTCCEEECCSSCCC----CCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred Ch--hhhcccccccEeeccccCccc--CCcchhcc-CCcccEEECCCCccc----ccCcccccCCcccCEEEcccCcccc
Confidence 45 379999999999999999984 33555666 999999999999998 4432256669999999999999998
Q ss_pred ccCccccCCCCCc--EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcc-------------------------ccCc
Q 042884 165 SLPWCVANMTSLR--ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI-------------------------PISL 217 (614)
Q Consensus 165 ~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-------------------------~~~~ 217 (614)
..|..|..+++|+ .|++++|.+.+ ++...+. ..+|++|++++|.... .++.
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred cChhhhhhhcccceeEEecCCCccCc-cChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence 8889999999999 99999999994 5544454 4689999999875110 1111
Q ss_pred ccccCCC--CccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChh
Q 042884 218 EPLFNHS--RLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW 295 (614)
Q Consensus 218 ~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~ 295 (614)
..+..+. +|+.+++++|.+.+..+..|... .+|++|++ .++... .+|..+..+++|++|++++|.+.+..|..
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l-~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCF---SGLQELDL-TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC---TTCSEEEC-TTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccc---cCCCEEec-cCCccC-CCChhhcccccCCEEECccCCcCcCchhh
Confidence 2222222 78999999999988776655543 48999999 555554 78888999999999999999999555544
Q ss_pred HHhcCCCccEEEccCCCCCCC-CCCCCCCCCccCEEEccCCccccCC--ChhhhhcCCCccEEEccCCcCCCCCccchhc
Q 042884 296 LLENNTKLKTLFLVNDSLAGP-FRLPIHSHKRLRQLDVSNNNFQGHI--PLEIGDILPNLISFNISMNALDGSIPSSFGN 372 (614)
Q Consensus 296 ~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 372 (614)
+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++.. +..+. .+++|++|++++|.+.+..+..|..
T Consensus 321 -~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 321 -ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp -GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCSCEEECTTTTTT
T ss_pred -hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCCcCCcCCHHHhcC
Confidence 78999999999999998854 4455889999999999999998443 44444 4899999999999999888999999
Q ss_pred cccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCcc---CCccccCCCcC
Q 042884 373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIGH---IPPQIGNLTRI 443 (614)
Q Consensus 373 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L 443 (614)
+++|++|++++|.+.+..|...+..+++|++|++++|.+++. .+++|++|++++|++++. .+..+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 999999999999998777777778999999999999998763 368899999999999862 34678999999
Q ss_pred CEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCC
Q 042884 444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGN 523 (614)
Q Consensus 444 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n 523 (614)
++|++++|++++..|..|..+++|++|++++|++++..|+.+..++.| +|++++|++++..|..+..+++++.+++++|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 999999999999999999999999999999999999999999999999 9999999999988888899999999999999
Q ss_pred cCCCCCCC
Q 042884 524 TFLCGLPL 531 (614)
Q Consensus 524 ~~~c~~~~ 531 (614)
|+.|+|+.
T Consensus 558 ~~~c~c~~ 565 (606)
T 3t6q_A 558 PLDCTCSN 565 (606)
T ss_dssp CEECSGGG
T ss_pred CccccCCc
Confidence 99999974
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-53 Score=463.42 Aligned_cols=495 Identities=18% Similarity=0.158 Sum_probs=410.8
Q ss_pred cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
..+++|..+. +++++|++++|.++++ .+ .|.++++|++|++++|.+.+..+..+.++++|+++++++|.+.+.
T Consensus 22 ~l~~ip~~~~--~~l~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 22 KLSKVPDDIP--SSTKNIDLSFNPLKIL----KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp CCSSCCTTSC--TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CcccCCCCCC--CCcCEEECCCCCcCEe----ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence 3567777655 8899999999999987 45 899999999999999999988888899999999999999988765
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG 164 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~ 164 (614)
.| ..|+++++|++|++++|.+.. ..+..++. +++|++|++++|.+.+ ..+|. .+.++++|++|++++|++++
T Consensus 96 ~p--~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 96 SP--GSFSGLTSLENLVAVETKLAS--LESFPIGQ-LITLKKLNVAHNFIHS--CKLPA-YFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CT--TSSTTCTTCCEEECTTSCCCC--SSSSCCTT-CTTCCEEECCSSCCCC--CCCCG-GGGTCTTCCEEECCSSCCCE
T ss_pred Ch--hhcCCcccCCEEEccCCcccc--ccccccCC-CCCCCEEeCCCCcccc--eechH-hHhhcCCCCEEEccCCccee
Confidence 45 379999999999999999874 33355666 9999999999999873 12454 89999999999999999998
Q ss_pred ccCccccCCCCCc----EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccC-------
Q 042884 165 SLPWCVANMTSLR----ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN------- 233 (614)
Q Consensus 165 ~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~------- 233 (614)
..+..|..+++|+ +|++++|.+. .++...+... +|++|++++|.+.+......+.+++.++.+++..
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 8888887776554 8999999998 7777666555 8999999999887544445567777777766633
Q ss_pred --------------------------CcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCC
Q 042884 234 --------------------------NELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTK 287 (614)
Q Consensus 234 --------------------------n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~ 287 (614)
+.+.+..+. .....+|+.|++ .++.. ..+| .+..+++|++|++++|.
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~----~~~l~~L~~L~l-~~~~~-~~l~-~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK----FHCLANVSAMSL-AGVSI-KYLE-DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS----CGGGTTCSEEEE-ESCCC-CCCC-CCCTTCCCSEEEEESCC
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccc----cccCCCCCEEEe-cCccc-hhhh-hccccccCCEEEccccc
Confidence 333333222 223457888888 44444 3455 77888999999999999
Q ss_pred CCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccC--CChhhhhcCCCccEEEccCCcCCCC
Q 042884 288 MNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH--IPLEIGDILPNLISFNISMNALDGS 365 (614)
Q Consensus 288 i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 365 (614)
+ +.+|. + .+++|++|++++|...+ ...+..+++|+.|++++|.+++. ++..+.. +++|++|++++|.+++
T Consensus 319 l-~~lp~--~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~- 390 (606)
T 3vq2_A 319 L-KQFPT--L-DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII- 390 (606)
T ss_dssp C-SSCCC--C-CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-
T ss_pred C-ccccc--C-CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc-
Confidence 9 58884 4 89999999999996554 33677899999999999999844 2555554 9999999999999885
Q ss_pred CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCc-cCCcccc
Q 042884 366 IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIG-HIPPQIG 438 (614)
Q Consensus 366 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~-~~~~~~~ 438 (614)
.|..+..+++|++|++++|.+.+..|...+..+++|++|++++|.+++. .+++|++|++++|++++ ..|..|.
T Consensus 391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence 5588999999999999999999666656778999999999999998763 36789999999999997 4788999
Q ss_pred CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccC-CcCc
Q 042884 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA-TFNE 517 (614)
Q Consensus 439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~ 517 (614)
.+++|++|++++|++++..|..|.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +++.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 5666578886 5999
Q ss_pred ccccCCcCCCCCCCC
Q 042884 518 SSYEGNTFLCGLPLP 532 (614)
Q Consensus 518 ~~~~~n~~~c~~~~~ 532 (614)
+++++||+.|+|+..
T Consensus 550 l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 550 FNLTNNSVACICEHQ 564 (606)
T ss_dssp EECCSCCCCCSSTTH
T ss_pred EEccCCCcccCCccH
Confidence 999999999999864
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.5e-50 Score=444.78 Aligned_cols=486 Identities=18% Similarity=0.133 Sum_probs=332.7
Q ss_pred CEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCCCEE
Q 042884 21 NTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100 (614)
Q Consensus 21 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L 100 (614)
+.+|.+++.++.+ +..+. +++++|++++|.+.+..+..+.++++|+++++++|.+.+..| .+|.++++|++|
T Consensus 7 ~~~~cs~~~L~~i----p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKLTQV----PDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCSSCCSSC----CSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT--THHHHCTTCCEE
T ss_pred CeeECCCCCcccc----ccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH--HHHhcccCcCEE
Confidence 6789999999876 22343 799999999999998888889999999999999998876444 378899999999
Q ss_pred eCcCcccCCCcchhh-HhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEE
Q 042884 101 NMERARIAPNTSFLQ-IIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRIL 179 (614)
Q Consensus 101 ~l~~n~l~~~~~~~~-~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 179 (614)
++++|.+. .+|. .+.. +++|++|++++|.+. .+++..|+++++|++|++++|.+++..|..+.++++|++|
T Consensus 79 ~L~~n~l~---~l~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 79 NLQHNELS---QLSDKTFAF-CTNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp ECCSSCCC---CCCTTTTTT-CTTCSEEECCSSCCC----CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred ECCCCccC---ccChhhhcc-CCCCCEEECCCCccC----ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 99999998 5665 4666 999999999999998 5666689999999999999999999889999999999999
Q ss_pred EcccCCCCCccCCCCC--CCCCCCCEEEcccCcCccccCcccccC---------------------------CCCccEEE
Q 042884 180 DVSSNQLTGSIASSPL--AHLTSIEELHLSDNHFRIPISLEPLFN---------------------------HSRLKIFD 230 (614)
Q Consensus 180 ~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~---------------------------l~~L~~L~ 230 (614)
++++|.+++ ++...+ ..+++|++|++++|.+.+..+ ..+.. .++|+.|+
T Consensus 151 ~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 151 LLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp ECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EccCCcccc-cCHHHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 999999984 443323 356889999999998874332 22322 24566666
Q ss_pred ccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChh---------------
Q 042884 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW--------------- 295 (614)
Q Consensus 231 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~--------------- 295 (614)
+++|.+.+..+..+.... ..+|++|++ +++...+..|..+..+++|++|++++|.+.+..|..
T Consensus 229 L~~n~l~~~~~~~~~~l~-~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLK-WTNLTMLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTSCCCEECTTTTGGGG-GSCCCEEEC-TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred ccCCcccccChhHhhccC-cCCCCEEEC-CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 666666655544443221 123666666 444454445555666666666666666655333322
Q ss_pred -----------------HHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcccc-CCChhhhhc--CCCccEE
Q 042884 296 -----------------LLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQG-HIPLEIGDI--LPNLISF 355 (614)
Q Consensus 296 -----------------~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~--l~~L~~L 355 (614)
.|..+++|++|++++|.+.++.+..|.++++|++|++++|.+.. .++...+.. .++|+.|
T Consensus 307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L 386 (680)
T 1ziw_A 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386 (680)
T ss_dssp BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEE
T ss_pred hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceE
Confidence 24556666777777777777666667777777777777665421 222222221 2467777
Q ss_pred EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcC
Q 042884 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKL 429 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l 429 (614)
++++|++++..|..|..+++|++|++++|.+.+.+|...+.++++|++|++++|++.+. .+++|+.|++++|.+
T Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 77777777777788888888888888888887777777777888888888888876542 245566666666655
Q ss_pred C--ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCc--------ccccCCCCCCeEeccCC
Q 042884 430 I--GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP--------HQLVELKTLEVFSLAFN 499 (614)
Q Consensus 430 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~--------~~l~~l~~L~~L~l~~N 499 (614)
. +..|..|..+++|++|++++|+++++.+..|.++++|++|++++|++++..+ ..|.++++|++|++++|
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 4 3445555666666666666666665555555666666666666665553311 12445555555555555
Q ss_pred cCcccCCccccccCCcCcccccCCcCC
Q 042884 500 NLSGEIPEWKAQFATFNESSYEGNTFL 526 (614)
Q Consensus 500 ~l~~~~~~~~~~~~~l~~~~~~~n~~~ 526 (614)
+++...+..+..+++++.+++++|...
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCHHHcccccCcceeECCCCCCC
Confidence 555333334555555555555555443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-50 Score=440.35 Aligned_cols=477 Identities=21% Similarity=0.186 Sum_probs=401.0
Q ss_pred CCcc-ccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 7 GSKL-LQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 7 ~~~l-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
.+.+ |..|+++++|++|++++|+++++ .+ .|.++++|++|++++|.+.+..|..+..+++|+++++.+|.+.+.
T Consensus 45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 45 LPTIQNTTFSRLINLTFLDLTRCQIYWI----HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp CSEECTTTSTTCTTCSEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred cCcCChhHhccCccceEEECCCCcccee----ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 3455 55899999999999999999887 55 799999999999999999988888999999999999999998753
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCC--eEECcCCcc
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQ--ELYKVNNDL 162 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~--~L~L~~n~i 162 (614)
.+ ..+.++++|++|++++|.+.+ .....+.. +++|++|++++|.++ .+++..+..+++|+ .|++++|.+
T Consensus 121 ~~--~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 121 DF--IPLHNQKTLESLYLGSNHISS--IKLPKGFP-TEKLKVLDFQNNAIH----YLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp GG--SCCTTCTTCCEEECCSSCCCC--CCCCTTCC-CTTCCEEECCSSCCC----EECHHHHHTTTTCCSEEEECTTCCC
T ss_pred Cc--chhccCCcccEEECCCCcccc--cCcccccC-CcccCEEEcccCccc----ccChhhhhhhcccceeEEecCCCcc
Confidence 34 368999999999999999974 22234444 899999999999998 56666899999999 899999999
Q ss_pred ccccCccccCCCCCcEEEcccCCCC-------------------------CccCCCCCCCCC--CCCEEEcccCcCcccc
Q 042884 163 RGSLPWCVANMTSLRILDVSSNQLT-------------------------GSIASSPLAHLT--SIEELHLSDNHFRIPI 215 (614)
Q Consensus 163 ~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~L~~n~~~~~~ 215 (614)
++..|..|.. .+|++|++++|... ..++...+..+. +|++|++++|.+. .+
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~ 269 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NI 269 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SC
T ss_pred CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-cc
Confidence 9877777655 58889988877410 012222233332 7889999999887 45
Q ss_pred CcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChh
Q 042884 216 SLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNW 295 (614)
Q Consensus 216 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~ 295 (614)
+...+..+++|+.|++++|.+.... ..+. ...+|++|++ .++...+..|..+..+++|++|++++|.+.+.+|..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp-~~l~---~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELP-SGLV---GLSTLKKLVL-SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCC-SSCC---SCTTCCEEEC-TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred CHHHhccccCCCEEeccCCccCCCC-hhhc---ccccCCEEEC-ccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 5567888999999999999887543 2332 3458999999 677777777788899999999999999998788877
Q ss_pred HHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCcc-chhc
Q 042884 296 LLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPS-SFGN 372 (614)
Q Consensus 296 ~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~ 372 (614)
.+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+..+. .+..
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhC
Confidence 7889999999999999998876 67789999999999999999855555444 489999999999999876554 4899
Q ss_pred cccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc---------cccCCccEEEcCCCcCCccCCccccCCCcC
Q 042884 373 INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG---------KVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 443 (614)
Q Consensus 373 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 443 (614)
+++|++|++++|.+. ..+...+..+++|++|++++|++++ ..+++|++|++++|++++..|..|..+++|
T Consensus 424 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp CTTCCEEECTTCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccCCEEECCCCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 999999999999998 4444556789999999999999875 235789999999999999999999999999
Q ss_pred CEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 444 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 444 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
++|++++|++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++|++.|.++
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999999 99999999999999999999999999999999998666
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-50 Score=454.68 Aligned_cols=468 Identities=23% Similarity=0.218 Sum_probs=395.1
Q ss_pred CCcc-ccccCCCCCCCEEECCCcccCCCCCCCC-c-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC
Q 042884 7 GSKL-LQSMGSLPSLNTLYLKHNNFTGTATTTT-Q-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN 83 (614)
Q Consensus 7 ~~~l-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~ 83 (614)
.+.+ |..|.++++|++|+|++|.+.+. + + .|.++++|++|+|++|.+.+..|..+.++.+|++|++++|.+.+
T Consensus 36 i~~i~~~~~~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 36 IRTVTASSFPFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp CCEECSSSCSSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred CCccChhHCcccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 3444 56899999999999999965433 3 4 79999999999999999998889999999999999999999987
Q ss_pred CccCCCCCCCCCCCCEEeCcCcccCCCcchh-hHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCC--CCCCeEECcCC
Q 042884 84 GVVRGQGFPHFKSLEHLNMERARIAPNTSFL-QIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSL--MHLQELYKVNN 160 (614)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l--~~L~~L~L~~n 160 (614)
.++....+.++++|++|++++|.+.+ ..+ ..+.. +++|++|++++|.+++ ..+ ..+..+ ++|+.|++++|
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~-L~~L~~L~Ls~N~i~~---~~~-~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGK-LNSLKSIDFSSNQIFL---VCE-HELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGGGT-CSSCCEEEEESSCCCC---CCS-GGGHHHHHCSSCCCEECCS
T ss_pred ccccCccccccCCCCEEECCCCcccc--cccchhHhh-CCCCCEEECCCCcCCe---eCH-HHcccccCCccceEECCCC
Confidence 77765679999999999999999975 333 45666 9999999999999985 333 367766 89999999999
Q ss_pred ccccccCccccCCCC------CcEEEcccCCCCCccCCCC-----------------------------------CCC--
Q 042884 161 DLRGSLPWCVANMTS------LRILDVSSNQLTGSIASSP-----------------------------------LAH-- 197 (614)
Q Consensus 161 ~i~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~-----------------------------------~~~-- 197 (614)
.+.+..|..+..+++ |+.|++++|.+.+.++... |..
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 999888887777665 9999999998765444321 112
Q ss_pred CCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCC
Q 042884 198 LTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHD 277 (614)
Q Consensus 198 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~ 277 (614)
.++|++|++++|.+.+ +....+..+++|+.|++++|.+.+..+..|..+ .+|++|++ +++...+..|..+..+++
T Consensus 265 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L-s~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGL---DNLQVLNL-SYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC---SSCCEEEE-ESCCCSCCCSCSCSSCTT
T ss_pred cCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCC---CCCCEEEC-CCCCCCccCHHHhcCCCC
Confidence 2689999999999984 444678999999999999999998877666544 48999999 677777778889999999
Q ss_pred CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357 (614)
Q Consensus 278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L 357 (614)
|+.|++++|.+. .++...|..+++|++|++++|.++++. .+++|+.|++++|.++ .+|.. ..+++.|++
T Consensus 340 L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~l 408 (844)
T 3j0a_A 340 VAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHL 408 (844)
T ss_dssp CCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEEC
T ss_pred CCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc----ccccceeec
Confidence 999999999998 444445889999999999999998643 3789999999999998 77653 567999999
Q ss_pred cCCcCCCCC-ccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-----------cccCCccEEEcC
Q 042884 358 SMNALDGSI-PSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-----------KVLSLLSGLDLS 425 (614)
Q Consensus 358 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------~~~~~L~~L~L~ 425 (614)
++|++++.. +..+..+++|++|++++|++++..+...+..+++|+.|++++|.+++ ..+++|+.|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 999998653 23456899999999999999865555566778999999999999863 235789999999
Q ss_pred CCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884 426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI 505 (614)
Q Consensus 426 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 505 (614)
+|++++..|..|.++++|++|+|++|+++++++..+. ++|+.|++++|++++..|+.| .+|+.+++++|++.|.+
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence 9999999999999999999999999999998888776 899999999999999988776 47999999999999866
Q ss_pred C
Q 042884 506 P 506 (614)
Q Consensus 506 ~ 506 (614)
+
T Consensus 564 ~ 564 (844)
T 3j0a_A 564 E 564 (844)
T ss_dssp S
T ss_pred c
Confidence 5
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-49 Score=427.19 Aligned_cols=497 Identities=18% Similarity=0.176 Sum_probs=401.7
Q ss_pred CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884 7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV 85 (614)
Q Consensus 7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 85 (614)
.+++|..+. +++++|++++|.++++ .+ .|..+++|++|++++|.+.+..+..+.++++|+++++.+|.+.+ +
T Consensus 19 l~~ip~~l~--~~l~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 91 (570)
T 2z63_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 91 (570)
T ss_dssp CSSCCSSSC--SSCCEEECCSCCCCEE----CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-E
T ss_pred ccccCCCcc--ccccEEEccCCccCcc----ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-c
Confidence 456776554 6799999999999877 44 78999999999999999987777888999999999999998764 4
Q ss_pred cCCCCCCCCCCCCEEeCcCcccCCCcchhh-HhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884 86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQ-IIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG 164 (614)
Q Consensus 86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~ 164 (614)
++ ..|.++++|++|++++|.+.. ++. .+.. +++|++|++++|.+.+ ..+|. .|+++++|++|++++|++++
T Consensus 92 ~~-~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 92 AL-GAFSGLSSLQKLVAVETNLAS---LENFPIGH-LKTLKELNVAHNLIQS--FKLPE-YFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CT-TTTTTCTTCCEEECTTSCCCC---STTCSCTT-CTTCCEEECCSSCCCC--CCCCG-GGGGCTTCCEEECTTSCCCE
T ss_pred CH-hhhcCcccccccccccccccc---CCCccccc-cccccEEecCCCccce--ecChh-hhcccCCCCEEeCcCCccce
Confidence 43 378999999999999998873 443 3555 8999999999998873 11344 78999999999999999998
Q ss_pred ccCccccCCCCC----cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccc---
Q 042884 165 SLPWCVANMTSL----RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELN--- 237 (614)
Q Consensus 165 ~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~--- 237 (614)
..+..+..+++| +.|++++|.+. .++...+... +|++|++++|..........+..++.++..++....+.
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred ecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 878888888888 89999999998 5555556655 79999999885443222234566677766655432221
Q ss_pred ---ccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCC
Q 042884 238 ---AEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLA 314 (614)
Q Consensus 238 ---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~ 314 (614)
......+... ....++.+++.......+..|..+..+++|+.|++++|.+. .+|.. +..+ +|++|++++|.+.
T Consensus 242 ~l~~~~~~~~~~l-~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 242 NLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-SYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp SCEECCTTTTGGG-GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-CSCC-CCSEEEEESCBCS
T ss_pred hhhhcchhhhccc-cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-hccC-CccEEeeccCccc
Confidence 1111122211 12256677774443556677888889999999999999998 67776 5566 9999999999998
Q ss_pred CCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCC--ccchhccccCcEEEccCCccCCcCCc
Q 042884 315 GPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSI--PSSFGNINLLKILDLSNNQLTGEIPE 392 (614)
Q Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~ 392 (614)
.++. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+. .+|.
T Consensus 318 ~l~~---~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~ 390 (570)
T 2z63_A 318 QFPT---LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390 (570)
T ss_dssp SCCB---CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEE
T ss_pred ccCc---ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccc
Confidence 5443 4678999999999998866554 34899999999999998654 678899999999999999998 5666
Q ss_pred hhhccCCCCCEEEccCCccccc-------ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCC-CCCCcCCCCC
Q 042884 393 HLAVGCVYLDFLALSNNSLEGK-------VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT-GLIPSTFSNL 464 (614)
Q Consensus 393 ~~~~~~~~L~~L~l~~n~l~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l 464 (614)
. +..+++|++|++++|.+.+. .+++|++|++++|.+.+..|..|.++++|++|++++|.++ +..|..+..+
T Consensus 391 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 391 N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 5 68899999999999988753 3578999999999999889999999999999999999997 5688999999
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCCC
Q 042884 465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 532 (614)
Q Consensus 465 ~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~ 532 (614)
++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++++.+++++||+.|+||..
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999888999999999999999999999888888899999999999999999999864
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.6e-49 Score=430.35 Aligned_cols=508 Identities=19% Similarity=0.163 Sum_probs=392.5
Q ss_pred CCcccc-ccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 7 GSKLLQ-SMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 7 ~~~l~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
.+.+++ .|.++++|++|++++|.++++ .+ .|.++++|++|++++|.+.+..|..+.++++|+++++.+|.+.+.
T Consensus 44 l~~~~~~~~~~l~~L~~L~Ls~n~l~~i----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 44 LKILKSYSFSNFSELQWLDLSRCEIETI----EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS
T ss_pred cCEeChhhccCCccCcEEeCCCCccccc----CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc
Confidence 345554 899999999999999999987 45 789999999999999999988899999999999999999998754
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCC----eEECcCC
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQ----ELYKVNN 160 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~----~L~L~~n 160 (614)
.+ ..++++++|++|++++|.+.+ ..+|..+.. +++|++|++++|.++ .+++..+..+++|+ +|++++|
T Consensus 120 ~~--~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 120 ES--FPIGQLITLKKLNVAHNFIHS-CKLPAYFSN-LTNLVHVDLSYNYIQ----TITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp SS--SCCTTCTTCCEEECCSSCCCC-CCCCGGGGT-CTTCCEEECCSSCCC----EECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cc--cccCCCCCCCEEeCCCCcccc-eechHhHhh-cCCCCEEEccCCcce----ecChhhhhhhhccccccceeeccCC
Confidence 33 369999999999999999873 146888888 999999999999998 45554666666554 8999999
Q ss_pred ccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEc---------------------------------c
Q 042884 161 DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL---------------------------------S 207 (614)
Q Consensus 161 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L---------------------------------~ 207 (614)
.+++..+..+... +|++|++++|.+.+......+..++.|+.+++ .
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 9997666666655 89999999998864333333556666665555 4
Q ss_pred cCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCC
Q 042884 208 DNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTK 287 (614)
Q Consensus 208 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~ 287 (614)
.|.+.+.++. +..+++|+.+++++|.+.... ......+|++|++ .++.. +.+|.+ .+++|++|++++|.
T Consensus 271 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l-~~n~l-~~lp~~--~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 271 TNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSI-IRCQL-KQFPTL--DLPFLKSLTLTMNK 339 (606)
T ss_dssp CTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEE-ESCCC-SSCCCC--CCSSCCEEEEESCS
T ss_pred cccccccccc--cccCCCCCEEEecCccchhhh-----hccccccCCEEEc-ccccC-cccccC--CCCccceeeccCCc
Confidence 4455544442 778899999999999886543 2334458999999 55555 677744 89999999999996
Q ss_pred CCCCCChhHHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCC
Q 042884 288 MNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS 365 (614)
Q Consensus 288 i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 365 (614)
..+.++ +..+++|++|++++|.+.+.. +..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+.+.
T Consensus 340 ~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 340 GSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG-LEELQHLDFQHSTLKRV 414 (606)
T ss_dssp SCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTT-CTTCCEEECTTSEEEST
T ss_pred Cccchh---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccC-CCCCCeeECCCCccCCc
Confidence 654553 568899999999999988763 566788899999999999987 56654444 89999999999999887
Q ss_pred Cc-cchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc-------ccCCccEEEcCCCcCCccCCccc
Q 042884 366 IP-SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK-------VLSLLSGLDLSCNKLIGHIPPQI 437 (614)
Q Consensus 366 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~L~~L~L~~n~l~~~~~~~~ 437 (614)
.+ ..+..+++|++|++++|.+.+..|. .+..+++|++|++++|++++. .+++|++|++++|++++..|..|
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 77 6889999999999999999855554 457899999999999998762 35789999999999999999999
Q ss_pred cCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC-CCCeEeccCCcCcccCCc-cccccCCc
Q 042884 438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSLAFNNLSGEIPE-WKAQFATF 515 (614)
Q Consensus 438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~-~~~~~~~l 515 (614)
.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++. ++..|-.
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~- 571 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK- 571 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT-
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH-
Confidence 99999999999999999999999999999999999999999 6777788887 599999999999986663 3333321
Q ss_pred CcccccCCcCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 042884 516 NESSYEGNTFLC-GLPLPICRSPATTPEASIGNERDDN 552 (614)
Q Consensus 516 ~~~~~~~n~~~c-~~~~~~c~~~~~~~~~~~~~~~~~~ 552 (614)
.++... +.....|..|....+....+.+...
T Consensus 572 ------~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~ 603 (606)
T 3vq2_A 572 ------EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603 (606)
T ss_dssp ------TSSSSBSSGGGCCCC-----------------
T ss_pred ------cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence 111111 1122367777766666665555443
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-48 Score=420.30 Aligned_cols=475 Identities=18% Similarity=0.162 Sum_probs=294.3
Q ss_pred CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884 7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV 85 (614)
Q Consensus 7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 85 (614)
.+++|+.+. ++|++|++++|.++++ .+ .+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+..
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYI----GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEE----CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred cccccccCC--CCccEEECcCCccCcc----ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 445555443 5666666666666655 33 5666666666666666666555555555666666666655554332
Q ss_pred cCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc
Q 042884 86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS 165 (614)
Q Consensus 86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~ 165 (614)
+ ..|+++++|++|++++|.+... ..+..+.. +++|++|++++|.+.+ .+++..+.++++|++|++++|++++.
T Consensus 91 ~--~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~-l~~L~~L~L~~n~~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 91 S--SWFGPLSSLKYLNLMGNPYQTL-GVTSLFPN-LTNLQTLRIGNVETFS---EIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp H--HHHTTCTTCCEEECTTCCCSSS-CSSCSCTT-CTTCCEEEEEESSSCC---EECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred H--HHhccCCCCcEEECCCCccccc-chhhhhhc-cCCccEEECCCCcccc---ccCHhhhhcccccCeeeccCCccccc
Confidence 2 1355556666666666655420 12233444 5566666665555332 44444555556666666666666555
Q ss_pred cCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcccc--CcccccCCCCccEEEccCCccccccccc
Q 042884 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPI--SLEPLFNHSRLKIFDAENNELNAEITES 243 (614)
Q Consensus 166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 243 (614)
.|..+..+++|++|+++.|.+. .+|...+..+++|++|++++|.+.+.. +......+++|+.|++++|.+.+.....
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 5555555666666666655554 444333344555666666665554311 1112233455555555555544322211
Q ss_pred ccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC--C---hhHHhcCCCccEEEccCCCCCCCCC
Q 042884 244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEF--P---NWLLENNTKLKTLFLVNDSLAGPFR 318 (614)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~--~---~~~~~~~~~L~~L~l~~n~i~~~~~ 318 (614)
++..+..+++|+.+++++|.+.+.. + ...+..+++++.|.+.++.+.....
T Consensus 243 ------------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 298 (549)
T 2z81_A 243 ------------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298 (549)
T ss_dssp ------------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred ------------------------HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence 1223345667777777777655321 0 0113456677777777776654221
Q ss_pred C-----CCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCc---cchhccccCcEEEccCCccCCcC
Q 042884 319 L-----PIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIP---SSFGNINLLKILDLSNNQLTGEI 390 (614)
Q Consensus 319 ~-----~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~ 390 (614)
. .+...++|+.|++++|.+. .+|..++..+++|++|++++|++++..| ..++.+++|++|++++|+++ .+
T Consensus 299 ~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ 376 (549)
T 2z81_A 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SM 376 (549)
T ss_dssp SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CH
T ss_pred cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-cc
Confidence 0 0122457888888888876 7777776567888888888888876553 23667788888888888887 44
Q ss_pred Cc--hhhccCCCCCEEEccCCccccc-----ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884 391 PE--HLAVGCVYLDFLALSNNSLEGK-----VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463 (614)
Q Consensus 391 ~~--~~~~~~~~L~~L~l~~n~l~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 463 (614)
+. ..+..+++|++|++++|++++. .+++|++|++++|++++. |..+ .++|++|++++|++++.+ ..
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~ 449 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LF 449 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CC
T ss_pred ccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----cc
Confidence 43 4467788888888888877642 246788888888888743 3333 257888888888888653 56
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++++.+++++|||.|+||
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 788888888888888 5565 4567888888888888888888778888888888888888888886
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.3e-46 Score=407.99 Aligned_cols=514 Identities=18% Similarity=0.175 Sum_probs=377.5
Q ss_pred CCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCc
Q 042884 7 GSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGV 85 (614)
Q Consensus 7 ~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 85 (614)
.++||+.+. +++++|||++|+|+++ .+ +|.++++|++|+|++|.+....+.+|.++++|++|++++|.+.+ +
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l----~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l 115 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 115 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-E
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCC----CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-C
Confidence 456675443 4789999999998877 44 78888999999999998887777788888889999988887653 4
Q ss_pred cCCCCCCCCCCCCEEeCcCcccCCCcchhhH-hhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884 86 VRGQGFPHFKSLEHLNMERARIAPNTSFLQI-IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRG 164 (614)
Q Consensus 86 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~ 164 (614)
|. ..|.++++|++|++++|.++ .++.. +.. +++|++|++++|.++. ...+..+..+++|++|++++|++++
T Consensus 116 ~~-~~f~~L~~L~~L~Ls~N~l~---~l~~~~~~~-L~~L~~L~Ls~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 116 AL-GAFSGLSSLQKLVAVETNLA---SLENFPIGH-LKTLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CG-GGGTTCTTCCEEECTTSCCC---CSTTCCCTT-CTTCCEEECCSSCCCC---CCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CH-HHhcCCCCCCEEECCCCcCC---CCChhhhhc-CcccCeeccccCcccc---CCCchhhccchhhhhhcccCccccc
Confidence 44 36888889999999998887 44443 555 8889999998888864 2223367888889999999998887
Q ss_pred ccCccccCCCC----CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccccc-
Q 042884 165 SLPWCVANMTS----LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAE- 239 (614)
Q Consensus 165 ~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~- 239 (614)
..+..|..+.+ ...++++.|.+. .++...+ ....++.+++.+|.....+....+..+..++...+..+.....
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cccccccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 77777765543 346888888887 5665534 3445677888877655444334455666666555533221110
Q ss_pred -----ccccccC------------------------CCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 042884 240 -----ITESYSL------------------------TTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNG 290 (614)
Q Consensus 240 -----~~~~~~~------------------------~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~ 290 (614)
....+.. .....+++.+.+. .+... ....+.....++.|++++|.+.
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~--~~~~~~~~~~L~~L~l~~~~~~- 341 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV-SVTIE--RVKDFSYNFGWQHLELVNCKFG- 341 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE-SCEEE--ECGGGGSCCCCSEEEEESCEES-
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc-ccccc--cccccccchhhhhhhccccccc-
Confidence 0000000 0001122222221 11000 0112334556777777777665
Q ss_pred CCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcccc--CCChhhhhcCCCccEEEccCCcCCCCCcc
Q 042884 291 EFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQG--HIPLEIGDILPNLISFNISMNALDGSIPS 368 (614)
Q Consensus 291 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 368 (614)
.++. ..++.|+.+++..|.+... .....+++|+.+++++|.+.. ..+...+. +.+|+.+++..+.+.. .+.
T Consensus 342 ~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~-~~~ 414 (635)
T 4g8a_A 342 QFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVIT-MSS 414 (635)
T ss_dssp SCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEE-ECS
T ss_pred CcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh-hhhhhhhhcccccccc-ccc
Confidence 3332 2456677777777766653 334568899999999998752 34444444 7899999999988764 455
Q ss_pred chhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCC-ccCCccccCCC
Q 042884 369 SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLI-GHIPPQIGNLT 441 (614)
Q Consensus 369 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~-~~~~~~~~~l~ 441 (614)
.+..+++|+.++++.++.....+...|..+.+++.++++.|.+.+ ..++.++.|++++|.+. +..|..|..++
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 688899999999999988877787888999999999999999875 34678999999999854 46788999999
Q ss_pred cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc-CCcCcccc
Q 042884 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF-ATFNESSY 520 (614)
Q Consensus 442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~ 520 (614)
+|++|+|++|++++++|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..|..+..+ ++++.+++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999888887 68999999
Q ss_pred cCCcCCCCCCCC-------------------CCCCCCCCCCCCCCCC
Q 042884 521 EGNTFLCGLPLP-------------------ICRSPATTPEASIGNE 548 (614)
Q Consensus 521 ~~n~~~c~~~~~-------------------~c~~~~~~~~~~~~~~ 548 (614)
++|||.|+|... .|..|....|.++...
T Consensus 575 ~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 575 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 621 (635)
T ss_dssp TTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred eCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee
Confidence 999999999641 4888887777666554
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-45 Score=395.76 Aligned_cols=474 Identities=19% Similarity=0.199 Sum_probs=380.9
Q ss_pred CCccc-cccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 7 GSKLL-QSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 7 ~~~l~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
.+.++ .+|..+++|++|++++|+++++ .+ .|.++++|++|++++|.+....+..+.++.+|+++++.+|.+.+
T Consensus 40 l~~~~~~~~~~l~~L~~L~Ls~n~i~~i----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 114 (570)
T 2z63_A 40 LRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS- 114 (570)
T ss_dssp CCEECTTTTTTCSSCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-
T ss_pred cCccChhHhhCCCCceEEECCCCcCCcc----CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-
Confidence 34454 3789999999999999999887 44 78999999999999999988878899999999999999998764
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC----CeEECcCC
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL----QELYKVNN 160 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L----~~L~L~~n 160 (614)
++. ..++++++|++|++++|.+.. ..+|..+.. +++|++|++++|.++ .+++..++.+++| +.|++++|
T Consensus 115 l~~-~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~-l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 115 LEN-FPIGHLKTLKELNVAHNLIQS-FKLPEYFSN-LTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp STT-CSCTTCTTCCEEECCSSCCCC-CCCCGGGGG-CTTCCEEECTTSCCC----EECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCC-ccccccccccEEecCCCccce-ecChhhhcc-cCCCCEEeCcCCccc----eecHHHccchhccchhhhhcccCCC
Confidence 443 258999999999999999873 136788888 999999999999998 5665578888888 89999999
Q ss_pred ccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCcc-----ccCcccccCCCC--ccEEEccC
Q 042884 161 DLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRI-----PISLEPLFNHSR--LKIFDAEN 233 (614)
Q Consensus 161 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-----~~~~~~~~~l~~--L~~L~l~~ 233 (614)
.+++..|..|..+ +|+.|++++|..........+..++.++.+.+....+.. .++...+..+.+ ++.+++++
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 9998888888776 899999999854422111235566666665554332210 122222333332 45555555
Q ss_pred C-cccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC
Q 042884 234 N-ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS 312 (614)
Q Consensus 234 n-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 312 (614)
+ .+.+..++.+. ...+|+.|++ .++... .+|.++..+ +|+.|++++|.+. .+|. ..+++|++|++++|.
T Consensus 267 ~~~~~~~~~~~~~---~l~~L~~L~l-~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 267 LDYYLDDIIDLFN---CLTNVSSFSL-VSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNK 336 (570)
T ss_dssp TTEEESCSTTTTG---GGTTCSEEEE-ESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCB
T ss_pred chhhhhhchhhhc---CcCcccEEEe-cCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCc
Confidence 5 34333333332 2347888888 444443 578888888 9999999999998 7775 478999999999999
Q ss_pred CCCCCCCCCCCCCccCEEEccCCccccCC--ChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcC
Q 042884 313 LAGPFRLPIHSHKRLRQLDVSNNNFQGHI--PLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEI 390 (614)
Q Consensus 313 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 390 (614)
+.+..+. ..+++|+.|++++|.+++.. +..+.. +++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 8875544 67899999999999997432 445544 89999999999999865554 999999999999999998666
Q ss_pred CchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCC-ccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884 391 PEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLI-GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463 (614)
Q Consensus 391 ~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 463 (614)
|...+..+++|++|++++|.+.+. .+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..|..
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 667778999999999999998763 3688999999999998 578899999999999999999999999999999
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884 464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507 (614)
Q Consensus 464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 507 (614)
+++|++|++++|++++..|..|..+++|+.|++++|+++|.+|.
T Consensus 493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999998888899999999999999999998875
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=395.51 Aligned_cols=452 Identities=16% Similarity=0.140 Sum_probs=295.6
Q ss_pred cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
..+.+|+.+. ++|++|++++|.++++ .+ .+..+++|++|++++|.+.+..|..+.++++|+++++++|.+. .
T Consensus 11 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 83 (520)
T 2z7x_B 11 GLIHVPKDLS--QKTTILNISQNYISEL----WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K 83 (520)
T ss_dssp CCSSCCCSCC--TTCSEEECCSSCCCCC----CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-E
T ss_pred Cccccccccc--ccccEEECCCCccccc----ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-e
Confidence 3456777665 7888888888888876 54 7888888888888888888777888888888888888888776 5
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC--CeEECcCCcc
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL--QELYKVNNDL 162 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L--~~L~L~~n~i 162 (614)
+|.. .+++|++|++++|.+.+ ..+|..++. +++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 84 lp~~----~l~~L~~L~L~~N~l~~-~~~p~~~~~-l~~L~~L~L~~n~l~~-------~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 84 ISCH----PTVNLKHLDLSFNAFDA-LPICKEFGN-MSQLKFLGLSTTHLEK-------SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EECC----CCCCCSEEECCSSCCSS-CCCCGGGGG-CTTCCEEEEEESSCCG-------GGGGGGTTSCEEEEEEEECTT
T ss_pred cCcc----ccCCccEEeccCCcccc-ccchhhhcc-CCcceEEEecCcccch-------hhccccccceeeEEEeecccc
Confidence 6642 68888888888888863 124677777 8888888888887763 256667777 8888888888
Q ss_pred --ccccCccccCCC-CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCc-------CccccCcccccCCCCccEEEcc
Q 042884 163 --RGSLPWCVANMT-SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNH-------FRIPISLEPLFNHSRLKIFDAE 232 (614)
Q Consensus 163 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~~l~~L~~L~l~ 232 (614)
.+..|..+..+. +...+++++|.+.+.++...+..+++|+.|++++|. +.+.++ .+..+++|+.|+++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLN 228 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhcccc
Confidence 777777777765 344677788888777777778888888888888886 444443 57788888888888
Q ss_pred CCcccccccccccCCCCCccceeeeccCCCCCCCCCCccc-----cCCCCCcEEEccCCCCCCCCChhHHhcC---CCcc
Q 042884 233 NNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFL-----YHQHDLEYVDLSHTKMNGEFPNWLLENN---TKLK 304 (614)
Q Consensus 233 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~~~~~---~~L~ 304 (614)
+|.+.+.....+.......+|++|++ .++...+.+|..+ ..+++|+.+++++|.+ .+|...+..+ .+|+
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSI-SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEE-EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEe-ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence 88776532221111111125666666 4444444555555 5666666666666666 4442212222 4566
Q ss_pred EEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCC--CCccchhccccCcEEEcc
Q 042884 305 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG--SIPSSFGNINLLKILDLS 382 (614)
Q Consensus 305 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~ 382 (614)
.|++++|.+..... +..+++|++|++++|.+++.+|..+.. +++|++|++++|++++ ..|..+..+++|++|+++
T Consensus 306 ~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 306 NFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred EEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 66666666554221 145566666666666666445544433 5666666666666664 334556666666666666
Q ss_pred CCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCC
Q 042884 383 NNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 462 (614)
Q Consensus 383 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 462 (614)
+|.+++.+|...+..+++ |++|++++|++++..|..+. ++|++|++++|+++ .+|..+.
T Consensus 383 ~N~l~~~l~~~~~~~l~~------------------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKS------------------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp SSCCBCCGGGCSCCCCTT------------------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred CCcCCcccccchhccCcc------------------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 666654355544433333 44444444444444444332 56777777777777 4444455
Q ss_pred CCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 463 NLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 463 ~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
.+++|++|++++|+++.+.+..|..+++|++|++++|+++|.++
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 77777777777777774333336777777777777777776544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=389.14 Aligned_cols=460 Identities=19% Similarity=0.139 Sum_probs=365.8
Q ss_pred CEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCCCCEE
Q 042884 21 NTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHL 100 (614)
Q Consensus 21 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L 100 (614)
++||+++|.++.+ +..+. ++|++|++++|.+.+..+..+.++++|+++++++|.+.+..| ..|.++++|++|
T Consensus 3 ~~l~ls~n~l~~i----p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHV----PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI--SVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSC----CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG--GGGTTCTTCCEE
T ss_pred ceEecCCCCcccc----ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh--HHhhcccCCCEE
Confidence 6899999999976 33444 899999999999998888899999999999999999876445 378999999999
Q ss_pred eCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCC--cE
Q 042884 101 NMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL--RI 178 (614)
Q Consensus 101 ~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~ 178 (614)
++++|.+. .+|.. . +++|++|++++|.+++ ..+|. .|+++++|++|++++|.+++ ..+..+++| ++
T Consensus 75 ~Ls~N~l~---~lp~~--~-l~~L~~L~L~~N~l~~--~~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 75 DLSHNKLV---KISCH--P-TVNLKHLDLSFNAFDA--LPICK-EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK 142 (520)
T ss_dssp ECCSSCCC---EEECC--C-CCCCSEEECCSSCCSS--CCCCG-GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred ecCCCcee---ecCcc--c-cCCccEEeccCCcccc--ccchh-hhccCCcceEEEecCcccch---hhccccccceeeE
Confidence 99999987 67766 4 9999999999999873 11334 89999999999999999985 457777888 99
Q ss_pred EEcccCCC--CCccCCCCCCCCC-CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884 179 LDVSSNQL--TGSIASSPLAHLT-SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255 (614)
Q Consensus 179 L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 255 (614)
|++++|.+ .+..|.. +..+. +...+++++|.+.+.++...+..+++|+.+++++|.-..... .
T Consensus 143 L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~------------ 208 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-Y------------ 208 (520)
T ss_dssp EEEEECTTTTSSCCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-H------------
T ss_pred EEeeccccccccccccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-e------------
Confidence 99999998 6555543 55544 234678888888777777778889999999998875110000 0
Q ss_pred eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHh--cCCCccEEEccCCCCCCCCCCCC-----CCCCccC
Q 042884 256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLE--NNTKLKTLFLVNDSLAGPFRLPI-----HSHKRLR 328 (614)
Q Consensus 256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~ 328 (614)
..+.+ ..+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.+.+..+..+ ..+++|+
T Consensus 209 --------~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~ 279 (520)
T 2z7x_B 209 --------FLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279 (520)
T ss_dssp --------HHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred --------eecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeE
Confidence 00111 24567888999999988877543322221 24689999999999987677766 8899999
Q ss_pred EEEccCCccccCCC-hhhhhc--CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEE
Q 042884 329 QLDVSNNNFQGHIP-LEIGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA 405 (614)
Q Consensus 329 ~L~l~~n~i~~~~~-~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 405 (614)
.+++++|.+ .+| ..++.. .++|+.|++++|.+.... .+..+++|++|++++|++++.+|..+ ..+++|++|+
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~ 354 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLI 354 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEE
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEE
Confidence 999999998 566 444431 267999999999887432 12678899999999999986667655 7899999999
Q ss_pred ccCCcccc--------cccCCccEEEcCCCcCCccCC-ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCc
Q 042884 406 LSNNSLEG--------KVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 476 (614)
Q Consensus 406 l~~n~l~~--------~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~ 476 (614)
+++|++++ ..+++|++|++++|++++.+| ..+..+++|++|++++|++++..|..+. ++|+.|++++|+
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence 99999985 246899999999999998455 4588999999999999999887777664 799999999999
Q ss_pred CCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 477 LNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 477 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
++ .+|..+..+++|++|++++|+++...+..+..+++++.+++++||+.|+|+.
T Consensus 433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 99 7788777999999999999999954444488899999999999999999875
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-44 Score=395.77 Aligned_cols=439 Identities=16% Similarity=0.209 Sum_probs=266.2
Q ss_pred CCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCC------Cc------cchHHHhhccCCcEEeccCccccCC
Q 042884 18 PSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSL------HI------SLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 18 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~------~~------~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
.+++.|+|++|.+++. +| +++.+++|++|+|++|.+ .+ .+|... +..++ +++..+...+.
T Consensus 81 ~~V~~L~L~~~~l~g~----lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR----VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTSCCEEE----ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCC
T ss_pred CCEEEEEecCcccCCc----CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccC
Confidence 4688888888888876 55 888888888888888854 11 122211 11122 22222222222
Q ss_pred ccCCC-----------------CCCCCCCCCEEeCc--CcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCC-----
Q 042884 85 VVRGQ-----------------GFPHFKSLEHLNME--RARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSR----- 140 (614)
Q Consensus 85 ~~~~~-----------------~~~~l~~L~~L~l~--~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~----- 140 (614)
.+... .......++.+.+. .|.++ .+|+.+++ +++|++|++++|.+++ .
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~---~ip~~l~~-l~~L~~L~Ls~n~l~~---~~~~~~ 226 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT---FVSKAVMR-LTKLRQFYMGNSPFVA---ENICEA 226 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE---EECGGGGG-CTTCCEEEEESCCCCG---GGBSSS
T ss_pred chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCc---cCCHHHhc-ccCCCEEECcCCcccc---cccccc
Confidence 11100 00011112222221 23443 35555555 6666666666666653 2
Q ss_pred ------------cCchhhc--CCCCCCeEECcCCccccccCccccCCCCCcEEEcccCC-CCC-ccCCCCCCCC------
Q 042884 141 ------------ILDRGLC--SLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ-LTG-SIASSPLAHL------ 198 (614)
Q Consensus 141 ------------i~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l------ 198 (614)
+|+ .++ ++++|++|++++|++.+.+|..|.++++|++|++++|+ ++| .+|.. +..+
T Consensus 227 ~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l 304 (636)
T 4eco_A 227 WENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVG 304 (636)
T ss_dssp CSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGG
T ss_pred ccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccC
Confidence 444 555 66666666666666666666666666666666666665 554 45543 3333
Q ss_pred CCCCEEEcccCcCccccCc-ccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCC
Q 042884 199 TSIEELHLSDNHFRIPISL-EPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHD 277 (614)
Q Consensus 199 ~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~ 277 (614)
++|++|++++|.++ .++. ..+..+++|+.|++++|.+.+..+ .+. ...+|++|++ +++... .+|..+..+++
T Consensus 305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~---~l~~L~~L~L-~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG---SEIKLASLNL-AYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE---EEEEESEEEC-CSSEEE-ECCTTSEEECT
T ss_pred CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC---CCCCCCEEEC-CCCccc-cccHhhhhhcc
Confidence 66666666666665 4442 145566666666666666553333 221 1124444444 222222 44555666777
Q ss_pred -CcEEEccCCCCCCCCChhHHhcC--CCccEEEccCCCCCCCCCCCCC-------CCCccCEEEccCCccccCCChhhhh
Q 042884 278 -LEYVDLSHTKMNGEFPNWLLENN--TKLKTLFLVNDSLAGPFRLPIH-------SHKRLRQLDVSNNNFQGHIPLEIGD 347 (614)
Q Consensus 278 -L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~i~~~~~~~~~~ 347 (614)
|++|++++|.+. .+|.. +... ++|++|++++|.+.+..+..+. .+++|+.|++++|.++ .+|..++.
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~ 454 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFS 454 (636)
T ss_dssp TCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHH
T ss_pred cCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHc
Confidence 777777777777 66654 3333 3677777777777776666665 5667777777777776 67776666
Q ss_pred cCCCccEEEccCCcCCCCCccchhcc-------ccCcEEEccCCccCCcCCchhh-ccCCCCCEEEccCCcccccccCCc
Q 042884 348 ILPNLISFNISMNALDGSIPSSFGNI-------NLLKILDLSNNQLTGEIPEHLA-VGCVYLDFLALSNNSLEGKVLSLL 419 (614)
Q Consensus 348 ~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~L 419 (614)
.+++|++|++++|+++...+..+... ++|++|++++|+++ .+|..++ .. +++|
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------------------l~~L 515 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT------------------LPYL 515 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT------------------CTTC
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc------------------CCCc
Confidence 67777777777777774333333333 27777777777776 6666553 23 4455
Q ss_pred cEEEcCCCcCCccCCccccCCCcCCEEEC------cCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCe
Q 042884 420 SGLDLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 493 (614)
Q Consensus 420 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~ 493 (614)
+.|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++. .+|..+. ++|+.
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCE
Confidence 566666666665 6777888888888888 457778888888888888999999999884 6777655 78889
Q ss_pred EeccCCcCcccC
Q 042884 494 FSLAFNNLSGEI 505 (614)
Q Consensus 494 L~l~~N~l~~~~ 505 (614)
|++++|++.+..
T Consensus 592 L~Ls~N~l~~~~ 603 (636)
T 4eco_A 592 LDIKDNPNISID 603 (636)
T ss_dssp EECCSCTTCEEE
T ss_pred EECcCCCCcccc
Confidence 999999887543
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-43 Score=384.15 Aligned_cols=455 Identities=18% Similarity=0.132 Sum_probs=330.8
Q ss_pred Ccc-ccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC-C
Q 042884 8 SKL-LQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN-G 84 (614)
Q Consensus 8 ~~l-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~-~ 84 (614)
+.+ |..|.++++|++|++++|+++++ .+ .|..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+ .
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRINTI----EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CccChhhhhcCCcccEEECCCCCcCcc----ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 344 46899999999999999999987 54 79999999999999999998888889999999999999998865 2
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchh-hHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccc
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFL-QIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR 163 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~ 163 (614)
.| ..++++++|++|++++|.+.+ .++ ..+.. +++|++|++++|.+++ ..+. .+..+++|++|++++|.+.
T Consensus 115 ~~--~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~-l~~L~~L~L~~n~l~~---~~~~-~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 115 VT--SLFPNLTNLQTLRIGNVETFS--EIRRIDFAG-LTSLNELEIKALSLRN---YQSQ-SLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp SS--CSCTTCTTCCEEEEEESSSCC--EECTTTTTT-CCEEEEEEEEETTCCE---ECTT-TTTTCSEEEEEEEECSBST
T ss_pred hh--hhhhccCCccEEECCCCcccc--ccCHhhhhc-ccccCeeeccCCcccc---cChh-hhhccccCceEecccCccc
Confidence 33 379999999999999998544 565 45666 9999999999999985 4444 8999999999999999987
Q ss_pred cccCccccCCCCCcEEEcccCCCCCcc--CCCCCCCCCCCCEEEcccCcCccccCc---ccccCCCCccEEEccCCcccc
Q 042884 164 GSLPWCVANMTSLRILDVSSNQLTGSI--ASSPLAHLTSIEELHLSDNHFRIPISL---EPLFNHSRLKIFDAENNELNA 238 (614)
Q Consensus 164 ~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~ 238 (614)
...+..+..+++|++|++++|++.+.. +......+++|+.|++++|.+.+..+. ..+..+++|+.+++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 443333467999999999999998421 233346789999999999988743221 234667899999999998765
Q ss_pred cccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCC-----CChhHHhcCCCccEEEccCCCC
Q 042884 239 EITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGE-----FPNWLLENNTKLKTLFLVNDSL 313 (614)
Q Consensus 239 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~~~~~L~~L~l~~n~i 313 (614)
...-.. .....+..+++|+.|++.++.+... ++. ++...++|++|++++|.+
T Consensus 266 ~~~~~~----------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 266 LGDFNP----------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKV 322 (549)
T ss_dssp CSCCCC----------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCC
T ss_pred cccccc----------------------cchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCcc
Confidence 421100 0011223445566666666554421 111 133445666666666666
Q ss_pred CCCCCCCCCCCCccCEEEccCCccccCCChh--hhhcCCCccEEEccCCcCCCCCc--cchhccccCcEEEccCCccCCc
Q 042884 314 AGPFRLPIHSHKRLRQLDVSNNNFQGHIPLE--IGDILPNLISFNISMNALDGSIP--SSFGNINLLKILDLSNNQLTGE 389 (614)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~ 389 (614)
..++...+..+++|+.|++++|.+++.+|.. ....+++|++|++++|++++..+ ..+..+++|++|++++|+++ .
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 401 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P 401 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-C
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-c
Confidence 5443333345666666666666665444322 12235666666666666664432 34566666666666666666 5
Q ss_pred CCchhhccCCCCCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCC
Q 042884 390 IPEHLAVGCVYLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 466 (614)
Q Consensus 390 ~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 466 (614)
+|..+ ..+++|++|++++|++++ ..+++|++|++++|++++.. ..+++|++|++++|+++.+ |. ...+++
T Consensus 402 lp~~~-~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~ 474 (549)
T 2z81_A 402 MPDSC-QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PD-ASLFPV 474 (549)
T ss_dssp CCSCC-CCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CC-GGGCTT
T ss_pred CChhh-cccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CC-cccCcc
Confidence 55543 456666666666666653 23568888999999888643 5789999999999999954 44 467899
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 467 IESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 467 L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
|++|++++|++++..|+.+..+++|+.|++++|+++|.+|
T Consensus 475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999999988889999999999999999998877
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-43 Score=393.06 Aligned_cols=387 Identities=18% Similarity=0.222 Sum_probs=265.4
Q ss_pred cccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCC--------------CcCchhhc--CCCCCCeEECcCCccccccCc
Q 042884 105 ARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSS--------------RILDRGLC--SLMHLQELYKVNNDLRGSLPW 168 (614)
Q Consensus 105 n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~--------------~i~~~~~~--~l~~L~~L~L~~n~i~~~~~~ 168 (614)
|.++ .+|..++. +++|++|+|++|.+++... .+|+ .++ ++++|++|++++|++.+.+|.
T Consensus 435 N~L~---~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 435 NRIT---FISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp CEEE---EECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred Cccc---chhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChH
Confidence 5555 47777777 8888888888888774100 0565 555 888888888888888888888
Q ss_pred cccCCCCCcEEEcccCC-CCC-ccCCC------CCCCCCCCCEEEcccCcCccccCc-ccccCCCCccEEEccCCccccc
Q 042884 169 CVANMTSLRILDVSSNQ-LTG-SIASS------PLAHLTSIEELHLSDNHFRIPISL-EPLFNHSRLKIFDAENNELNAE 239 (614)
Q Consensus 169 ~~~~l~~L~~L~L~~n~-l~~-~~~~~------~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~ 239 (614)
.|.++++|+.|++++|+ +++ .+|.. .+..+++|++|++++|.+. .+|. ..+..+++|+.|++++|.+..
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~- 587 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH- 587 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-
Confidence 88888888888888887 776 56642 2345568888888888887 6663 257788888888888887762
Q ss_pred ccccccCCCCCccceeeeccCCCCCCCCCCccccCCCC-CcEEEccCCCCCCCCChhHHhcCC--CccEEEccCCCCCCC
Q 042884 240 ITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHD-LEYVDLSHTKMNGEFPNWLLENNT--KLKTLFLVNDSLAGP 316 (614)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~~--~L~~L~l~~n~i~~~ 316 (614)
.+ .+ ....+|+.|++ +++.+. .+|..+..+++ |+.|++++|.+. .+|.. +...+ +|+.|++++|.+.+.
T Consensus 588 lp-~~---~~L~~L~~L~L-s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 588 LE-AF---GTNVKLTDLKL-DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CC-CC---CTTSEESEEEC-CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTTT
T ss_pred ch-hh---cCCCcceEEEC-cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCCc
Confidence 22 22 22235555555 333333 55666666666 777777777766 55543 33333 367777777766654
Q ss_pred CCCC---CC--CCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-------ccccCcEEEccCC
Q 042884 317 FRLP---IH--SHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-------NINLLKILDLSNN 384 (614)
Q Consensus 317 ~~~~---~~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n 384 (614)
.+.. +. .+++|+.|++++|.++ .+|..++..+++|+.|+|++|+++...+..+. ++++|+.|++++|
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence 3321 11 2336667777777766 66666665566677777777766633222222 2236677777777
Q ss_pred ccCCcCCchhh-ccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcC------CcCCCCC
Q 042884 385 QLTGEIPEHLA-VGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGLI 457 (614)
Q Consensus 385 ~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~ 457 (614)
+++ .+|..++ .. +++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+
T Consensus 739 ~L~-~lp~~l~~~~------------------l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 739 KLT-SLSDDFRATT------------------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp CCC-CCCGGGSTTT------------------CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred CCc-cchHHhhhcc------------------CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 666 5665543 12 4566677777777775 677888999999999976 7888899
Q ss_pred CcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCC--CCC
Q 042884 458 PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC--GLP 530 (614)
Q Consensus 458 ~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c--~~~ 530 (614)
|..+..+++|+.|++++|++ +.+|..+. ++|+.|+|++|++....+..+..........+.+|++.+ +||
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 99999999999999999999 57887765 699999999999987766666666666677777777665 665
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-43 Score=388.35 Aligned_cols=435 Identities=15% Similarity=0.198 Sum_probs=336.3
Q ss_pred CCcEEeccCccccCCccCCCCCCCCCCCCEEeCcCcccC------CC----cchhhHhhhcCCCcCEEeccCCcCCCCCC
Q 042884 70 PSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIA------PN----TSFLQIIGESTPSLKYLSLSDFTLSTNSS 139 (614)
Q Consensus 70 ~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------~~----~~~~~~l~~~l~~L~~L~L~~n~l~~~~~ 139 (614)
+.+.+++.++.+.+.+|. .++++++|++|++++|.+. +. ..+|... +..|+ ++++.+.+.+
T Consensus 82 ~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~--- 152 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDY--- 152 (636)
T ss_dssp CEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCC---
T ss_pred CEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhcc---
Confidence 566777777777666663 5677777777777777541 00 0112211 12233 3444443332
Q ss_pred CcCchhhc-------------------CCCCCCeEECc--CCccccccCccccCCCCCcEEEcccCCCCCc---------
Q 042884 140 RILDRGLC-------------------SLMHLQELYKV--NNDLRGSLPWCVANMTSLRILDVSSNQLTGS--------- 189 (614)
Q Consensus 140 ~i~~~~~~-------------------~l~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------- 189 (614)
.++. .+. ....++.+.+. .|++++ +|.+++++++|++|+|++|.+++.
T Consensus 153 ~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 153 DPRE-DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp CGGG-GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred Cchh-hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 2221 111 11122333332 567777 788888888888888888888864
Q ss_pred --------cCCCCCC--CCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCc-ccc-cccccccCC---CCCccce
Q 042884 190 --------IASSPLA--HLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNE-LNA-EITESYSLT---TPNFQLQ 254 (614)
Q Consensus 190 --------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~---~~~~~L~ 254 (614)
+|.. ++ ++++|++|++++|.+.+.+| ..+.++++|+.|++++|. +++ ..+..+..+ ....+|+
T Consensus 231 ~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 231 NSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp TSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccchhcccCchh-hhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 7765 66 88888888888888877666 567888888888888887 776 455444322 1224788
Q ss_pred eeeccCCCCCCCCCCc--cccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCc-cCEEE
Q 042884 255 YLLLSSGYGDGATFPK--FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKR-LRQLD 331 (614)
Q Consensus 255 ~L~l~~~~~~~~~~p~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~ 331 (614)
+|++ .++... .+|. .+..+++|++|++++|.+.+.+| . +..+++|++|++++|.+.. .+..+..+++ |+.|+
T Consensus 309 ~L~L-~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 309 IIYI-GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLS 383 (636)
T ss_dssp EEEC-CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEE
T ss_pred EEEC-CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEE
Confidence 8888 556565 7888 89999999999999999998899 3 8899999999999999994 5566888999 99999
Q ss_pred ccCCccccCCChhhhh-cCCCccEEEccCCcCCCCCccchh-------ccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884 332 VSNNNFQGHIPLEIGD-ILPNLISFNISMNALDGSIPSSFG-------NINLLKILDLSNNQLTGEIPEHLAVGCVYLDF 403 (614)
Q Consensus 332 l~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 403 (614)
+++|.++ .+|..+.. .+++|++|++++|.+++..|..+. .+++|++|++++|.++ .+|..++..+++|++
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS 461 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence 9999998 88876544 134899999999999999998888 7889999999999999 899999889999999
Q ss_pred EEccCCcccccc------c-------CCccEEEcCCCcCCccCCcccc--CCCcCCEEECcCCcCCCCCCcCCCCCCCCC
Q 042884 404 LALSNNSLEGKV------L-------SLLSGLDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 468 (614)
Q Consensus 404 L~l~~n~l~~~~------~-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 468 (614)
|++++|+++... . ++|+.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 999999998422 1 18999999999999 6777776 99999999999999998 788899999999
Q ss_pred EEEc------cCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCC
Q 042884 469 SLDL------SYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGL 529 (614)
Q Consensus 469 ~L~l------s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~ 529 (614)
+|++ ++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++++.+++++|++.|-.
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 9999 56788889999999999999999999999 57777554 79999999999998843
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-43 Score=394.07 Aligned_cols=445 Identities=16% Similarity=0.188 Sum_probs=351.1
Q ss_pred CCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeC-CCCCCCccchHH-------------------------------
Q 042884 18 PSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTL-SGSSLHISLLQS------------------------------- 64 (614)
Q Consensus 18 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~L-s~n~~~~~~~~~------------------------------- 64 (614)
..++.|+|++|.+.+. +| +++.+++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~----ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR----VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTTCCEEE----ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccCCCCCc----CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 5688999999999877 56 8999999999999 777554431100
Q ss_pred ---------Hh-----------hccCCcEEec--cCccccCCccCCCCCCCCCCCCEEeCcCcccCCCc-----------
Q 042884 65 ---------IA-----------SLFPSLKNLS--MSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNT----------- 111 (614)
Q Consensus 65 ---------~~-----------~l~~l~~l~l--~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------- 111 (614)
+. ....++.+.+ ..|.+.+ +|. .++++++|++|++++|.+++..
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~--~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK--AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG--GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH--HHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence 00 0001111111 1245554 774 6889999999999999987400
Q ss_pred ----chhhHhh--hcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCc-ccc-ccCccccCC-------CCC
Q 042884 112 ----SFLQIIG--ESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNND-LRG-SLPWCVANM-------TSL 176 (614)
Q Consensus 112 ----~~~~~l~--~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l-------~~L 176 (614)
.+|+.++ . +++|++|+|++|.+.+ .+|+ .+.++++|+.|++++|+ +++ .+|..+..+ ++|
T Consensus 476 ~~~g~iP~~l~f~~-L~~L~~L~Ls~N~l~~---~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 476 YAKQYENEELSWSN-LKDLTDVELYNCPNMT---QLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp HHHHHTTSCCCGGG-CTTCCEEEEESCTTCC---SCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred cccccCChhhhhcc-CCCCCEEECcCCCCCc---cChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 1788876 6 9999999999998887 7776 89999999999999998 887 778766554 499
Q ss_pred cEEEcccCCCCCccCC-CCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc-ce
Q 042884 177 RILDVSSNQLTGSIAS-SPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ-LQ 254 (614)
Q Consensus 177 ~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-L~ 254 (614)
++|++++|.+. .+|. ..+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+. ..+..+.. ..+ |+
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~---l~~~L~ 622 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCA---FTDQVE 622 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCE---ECTTCC
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhh---ccccCC
Confidence 99999999998 8887 23889999999999999988 666 7889999999999999988 33333332 336 99
Q ss_pred eeeccCCCCCCCCCCccccCCCC--CcEEEccCCCCCCCCChhH--Hh--cCCCccEEEccCCCCCCCCCCCCCCCCccC
Q 042884 255 YLLLSSGYGDGATFPKFLYHQHD--LEYVDLSHTKMNGEFPNWL--LE--NNTKLKTLFLVNDSLAGPFRLPIHSHKRLR 328 (614)
Q Consensus 255 ~L~l~~~~~~~~~~p~~~~~l~~--L~~L~Ls~n~i~~~~~~~~--~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 328 (614)
.|++ .++.+. .+|..+..++. |+.|++++|.+.+.+|... .. .+++|+.|++++|.+..++...+..+++|+
T Consensus 623 ~L~L-s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 623 GLGF-SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp EEEC-CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred EEEC-cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 9999 555555 77887776654 9999999999987665321 11 345899999999999976665566889999
Q ss_pred EEEccCCccccCCChhhhhcCC-------CccEEEccCCcCCCCCccchh--ccccCcEEEccCCccCCcCCchhhccCC
Q 042884 329 QLDVSNNNFQGHIPLEIGDILP-------NLISFNISMNALDGSIPSSFG--NINLLKILDLSNNQLTGEIPEHLAVGCV 399 (614)
Q Consensus 329 ~L~l~~n~i~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 399 (614)
.|++++|.++ .+|...+.... +|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+ ..++
T Consensus 701 ~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l-~~L~ 776 (876)
T 4ecn_A 701 TIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP-LNSS 776 (876)
T ss_dssp EEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG-GGCT
T ss_pred EEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh-hcCC
Confidence 9999999998 88888776432 8999999999999 6677776 89999999999999994 88876 4899
Q ss_pred CCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884 400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479 (614)
Q Consensus 400 ~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 479 (614)
+|+.|++++|+ ++++|++.+.+|..|..+++|++|+|++|++ +.+|..+. ++|+.|++++|++..
T Consensus 777 ~L~~L~Ls~N~------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 777 QLKAFGIRHQR------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp TCCEEECCCCB------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCEEECCCCC------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 99999999987 6788999999999999999999999999999 56676665 699999999999998
Q ss_pred CCcccccCCCCCCeEeccCCcCcc
Q 042884 480 KIPHQLVELKTLEVFSLAFNNLSG 503 (614)
Q Consensus 480 ~~~~~l~~l~~L~~L~l~~N~l~~ 503 (614)
+.+..+.....+..+.+.+|+++.
T Consensus 842 i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 842 IDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp EECGGGHHHHHTTCCEEECCTTSE
T ss_pred cChHHccccccchheeecCCCccc
Confidence 777777766677788888888763
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-42 Score=373.61 Aligned_cols=462 Identities=19% Similarity=0.140 Sum_probs=311.9
Q ss_pred CCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCC
Q 042884 16 SLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFK 95 (614)
Q Consensus 16 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~ 95 (614)
.+...+++|+++|+++++ +..+. ++|++|++++|.+.+..+..+..+++|+++++++|.+.+..| .+|.+++
T Consensus 29 ~~~~~~~l~ls~~~L~~i----p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~ 100 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHV----PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFNQ 100 (562)
T ss_dssp ----CCEEECTTSCCCSC----CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--TTTTTCT
T ss_pred ccCCCcEEEcCCCCCccC----CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--HHhCCCC
Confidence 344558999999999876 22332 789999999999988777888889999999999888765334 3688899
Q ss_pred CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcC-chhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884 96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRIL-DRGLCSLMHLQELYKVNNDLRGSLPWCVANMT 174 (614)
Q Consensus 96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 174 (614)
+|++|++++|.++ .+|.. . +++|++|++++|.++ .++ +..|+++++|++|++++|++++. .+..++
T Consensus 101 ~L~~L~Ls~N~l~---~lp~~--~-l~~L~~L~Ls~N~l~----~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~ 167 (562)
T 3a79_B 101 DLEYLDVSHNRLQ---NISCC--P-MASLRHLDLSFNDFD----VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA 167 (562)
T ss_dssp TCCEEECTTSCCC---EECSC--C-CTTCSEEECCSSCCS----BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT
T ss_pred CCCEEECCCCcCC---ccCcc--c-cccCCEEECCCCCcc----ccCchHhhcccCcccEEecCCCccccC---chhhhh
Confidence 9999999999887 66666 4 889999999998887 343 24788889999999999988753 345555
Q ss_pred CC--cEEEcccCCC--CCccCCCCCCCCC-CCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCC
Q 042884 175 SL--RILDVSSNQL--TGSIASSPLAHLT-SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTP 249 (614)
Q Consensus 175 ~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 249 (614)
+| ++|++++|.+ .+..|.. +..+. ..-.+++++|.+.+.++...+..+++|+.+++++|...... +
T Consensus 168 ~L~L~~L~L~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---l----- 238 (562)
T 3a79_B 168 HLHLSCILLDLVSYHIKGGETES-LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR---L----- 238 (562)
T ss_dssp TSCEEEEEEEESSCCCCSSSCCE-EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH---H-----
T ss_pred hceeeEEEeecccccccccCccc-ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch---H-----
Confidence 55 9999999888 6555543 44443 11255777887776666566777888888888877521100 0
Q ss_pred CccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhH--HhcCCCccEEEccCCCCCCCCCCCC-----C
Q 042884 250 NFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL--LENNTKLKTLFLVNDSLAGPFRLPI-----H 322 (614)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~-----~ 322 (614)
...+..+..+++|+.++++++.+.+...... ....++|++|++++|.+.+..+..+ .
T Consensus 239 ----------------~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 239 ----------------MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp ----------------HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred ----------------HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence 0011234455666666666655542211110 1123477777777777765555444 5
Q ss_pred CCCccCEEEccCCccccCCChh-hhhc--CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC
Q 042884 323 SHKRLRQLDVSNNNFQGHIPLE-IGDI--LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV 399 (614)
Q Consensus 323 ~l~~L~~L~l~~n~i~~~~~~~-~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 399 (614)
.++.|+.++++.+.+ .+|.. ++.. ..+|++|++++|.+.... ....+++|++|++++|.+++.+|..+ ..++
T Consensus 303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~ 377 (562)
T 3a79_B 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC-STLK 377 (562)
T ss_dssp SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CSCS
T ss_pred cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh-cccC
Confidence 555666666666655 34422 2221 255777777777765322 12566777777777777775455443 6677
Q ss_pred CCCEEEccCCcccc--------cccCCccEEEcCCCcCCc-cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884 400 YLDFLALSNNSLEG--------KVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 470 (614)
Q Consensus 400 ~L~~L~l~~n~l~~--------~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 470 (614)
+|++|++++|++++ ..+++|++|++++|++++ ..+..+..+++|++|++++|++++..|..+. ++|++|
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L 455 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL 455 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence 77777777777764 235678888888888876 3344577788888888888888766655543 678888
Q ss_pred EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
++++|+++ .+|..+..+++|++|++++|++++..+..+..+++++.+++++|||.|+|+.
T Consensus 456 ~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp ECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred ECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 88888887 5666666888888888888888843333377778888888888888888764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-42 Score=375.15 Aligned_cols=452 Identities=15% Similarity=0.125 Sum_probs=340.0
Q ss_pred cCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCC
Q 042884 6 DGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNG 84 (614)
Q Consensus 6 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~ 84 (614)
..+.+|..+. ++|++|++++|.++++ .+ .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 114 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNSISEL----RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N 114 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSCCCCC----CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-E
T ss_pred CCccCCCCCC--CCcCEEECCCCCcccc----ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-c
Confidence 3456777554 8999999999999988 55 8999999999999999999888899999999999999999976 5
Q ss_pred ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC--CeEECcCCcc
Q 042884 85 VVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL--QELYKVNNDL 162 (614)
Q Consensus 85 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L--~~L~L~~n~i 162 (614)
+|.. .+++|++|++++|.+.. ..+|..+.. +++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 115 lp~~----~l~~L~~L~Ls~N~l~~-l~~p~~~~~-l~~L~~L~L~~n~l~~-------~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 115 ISCC----PMASLRHLDLSFNDFDV-LPVCKEFGN-LTKLTFLGLSAAKFRQ-------LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECSC----CCTTCSEEECCSSCCSB-CCCCGGGGG-CTTCCEEEEECSBCCT-------TTTGGGTTSCEEEEEEEESSC
T ss_pred cCcc----ccccCCEEECCCCCccc-cCchHhhcc-cCcccEEecCCCcccc-------CchhhhhhceeeEEEeecccc
Confidence 7742 79999999999999873 123467777 9999999999999874 234555555 9999999999
Q ss_pred --ccccCccccCCC-CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCc-----cccCcccccCCCCccEEEccCC
Q 042884 163 --RGSLPWCVANMT-SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR-----IPISLEPLFNHSRLKIFDAENN 234 (614)
Q Consensus 163 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~~l~~L~~L~l~~n 234 (614)
++..|.++..+. ..-.+++++|.+.+.++...+..+++|+.+++++|... +.+ ..+..+++|+.++++++
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCC
Confidence 888898888775 22366889999887788777889999999999998522 122 34678889999999888
Q ss_pred cccccccccccCCCCCccceeeeccCCCCCCCCCCccc-----cCCCCCcEEEccCCCCCCCCChhHHhc---CCCccEE
Q 042884 235 ELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFL-----YHQHDLEYVDLSHTKMNGEFPNWLLEN---NTKLKTL 306 (614)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~~~~---~~~L~~L 306 (614)
.+.+.............+|++|++ .++...+.+|..+ ..++.|+.++++.+.+ .+|...+.. ..+|++|
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNI-YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEE-EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEE-eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 766432221111112237888888 5666666677766 5666666777777766 455332222 2568888
Q ss_pred EccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCC--CccchhccccCcEEEccCC
Q 042884 307 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGS--IPSSFGNINLLKILDLSNN 384 (614)
Q Consensus 307 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n 384 (614)
++++|.+.... ....+++|++|++++|.+++.+|..+.. +++|++|++++|++++. .|..+..+++|++|++++|
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 88888876432 1256788888888888888656655544 78888888888888863 3456788888888888888
Q ss_pred ccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCC
Q 042884 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 464 (614)
Q Consensus 385 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 464 (614)
++++.+|...+..+++|++|++ ++|++++..|..+. ++|++|++++|+++. +|..+..+
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l------------------~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l 472 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNL------------------SSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHL 472 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEEC------------------CSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSS
T ss_pred cCCCccChhhhcCcccCCEEEC------------------CCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCC
Confidence 8875577776655555555554 55555444444333 689999999999985 45555599
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 465 ~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
++|++|++++|+++.+.+..+..+++|+.|++++|+++|.++
T Consensus 473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999999999995444448999999999999999998766
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-39 Score=344.24 Aligned_cols=373 Identities=20% Similarity=0.225 Sum_probs=227.2
Q ss_pred CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc-CccccCCCCC
Q 042884 98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL-PWCVANMTSL 176 (614)
Q Consensus 98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L 176 (614)
+.++.+++.++ .+|. + .++|++|++++|.++ .+++..|.++++|++|++++|.+.+.+ +..|.++++|
T Consensus 13 ~~~~c~~~~l~---~lp~-l---~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 13 YNAICINRGLH---QVPE-L---PAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp TEEECCSSCCS---SCCC-C---CTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred cccCcCCCCcc---cCCC-C---CCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 35666666665 5555 2 467777777777776 444446777777777777777776433 5567777777
Q ss_pred cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccC-cccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884 177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPIS-LEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255 (614)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 255 (614)
++|++++|++. .++...|..+++|++|++++|.+++..+ ...+..+++|++|++++|.+.+..
T Consensus 82 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 145 (455)
T 3v47_A 82 IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ--------------- 145 (455)
T ss_dssp CEEECTTCTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC---------------
T ss_pred CEEeCCCCccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC---------------
Confidence 77777777777 3333347777777777777777764222 223666777777777777665332
Q ss_pred eeccCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCChhHHhcC--CCccEEEccCCCCCCCCCCCC--------CCC
Q 042884 256 LLLSSGYGDGATFPK-FLYHQHDLEYVDLSHTKMNGEFPNWLLENN--TKLKTLFLVNDSLAGPFRLPI--------HSH 324 (614)
Q Consensus 256 L~l~~~~~~~~~~p~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~--------~~l 324 (614)
|. .+..+++|++|++++|.+.+..+.. +..+ .+|+.|++++|.+....+..+ ..+
T Consensus 146 -------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 146 -------------PASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp -------------CCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred -------------cccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhcccccccccccc
Confidence 22 2456777888888888777555544 3333 577777888777776554432 245
Q ss_pred CccCEEEccCCccccCCChhhhhc--CCCccEEEccCCcCCCC----------Cccchhcc--ccCcEEEccCCccCCcC
Q 042884 325 KRLRQLDVSNNNFQGHIPLEIGDI--LPNLISFNISMNALDGS----------IPSSFGNI--NLLKILDLSNNQLTGEI 390 (614)
Q Consensus 325 ~~L~~L~l~~n~i~~~~~~~~~~~--l~~L~~L~L~~n~l~~~----------~~~~~~~l--~~L~~L~l~~n~l~~~~ 390 (614)
++|+.|++++|.+++..|..++.. .++|+.|++++|...+. .+..+..+ ++|++|++++|.+.+..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 677777777777776666555442 26777777777654321 11122222 45666666666666333
Q ss_pred CchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884 391 PEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 470 (614)
Q Consensus 391 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 470 (614)
| ..+..+++|+ +|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|
T Consensus 292 ~-~~~~~l~~L~------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 292 K-SVFSHFTDLE------------------QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp T-TTTTTCTTCC------------------EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred h-hhcccCCCCC------------------EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 3 3334444454 45555555555555556666666666666666665555556666666666
Q ss_pred EccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 471 DLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 471 ~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
++++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++||+.|+||
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666665555556666666666666666665444445555666666666666666655
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-39 Score=358.11 Aligned_cols=500 Identities=20% Similarity=0.179 Sum_probs=339.7
Q ss_pred ccCCcccc-ccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCcccc
Q 042884 5 RDGSKLLQ-SMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEV 82 (614)
Q Consensus 5 ~~~~~l~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~ 82 (614)
...+.+|+ +|.++++|++|||++|+|+++ .+ +|.++++|++|+|++|++....+..|.++.+|++|++++|.+.
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i----~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCc----ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 34566765 799999999999999999987 45 7999999999999999999777788999999999999999886
Q ss_pred CCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC----CeEECc
Q 042884 83 NGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL----QELYKV 158 (614)
Q Consensus 83 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L----~~L~L~ 158 (614)
+ ++. ..|+++++|++|++++|.+.. ...|..+.. +++|++|++++|.++ .+++..+..+.++ ..++++
T Consensus 138 ~-l~~-~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~-l~~L~~L~L~~N~l~----~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 138 S-LEN-FPIGHLKTLKELNVAHNLIQS-FKLPEYFSN-LTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp C-STT-CCCTTCTTCCEEECCSSCCCC-CCCCGGGGG-CTTCCEEECCSSCCC----EECGGGGHHHHTCTTCCCEEECT
T ss_pred C-CCh-hhhhcCcccCeeccccCcccc-CCCchhhcc-chhhhhhcccCcccc----ccccccccchhhhhhhhhhhhcc
Confidence 4 554 369999999999999999863 135667777 999999999999998 4555466555443 468889
Q ss_pred CCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEc------------------------------cc
Q 042884 159 NNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHL------------------------------SD 208 (614)
Q Consensus 159 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L------------------------------~~ 208 (614)
.|.++...+..+. ...++.+++.+|.....++...+..+..++...+ ..
T Consensus 210 ~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 9998865554443 3456677777665432222222333333333322 11
Q ss_pred CcCcc--ccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCC
Q 042884 209 NHFRI--PISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHT 286 (614)
Q Consensus 209 n~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n 286 (614)
+.... ......+....+++.+++..+.+....... ....++.|++ .++......+ ..++.|+.++++.|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----~~~~L~~L~l-~~~~~~~~~~---~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS-----YNFGWQHLEL-VNCKFGQFPT---LKLKSLKRLTFTSN 359 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG-----SCCCCSEEEE-ESCEESSCCC---CBCTTCCEEEEESC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccc-----cchhhhhhhc-ccccccCcCc---ccchhhhhcccccc
Confidence 11100 001112344456667777666655433211 1225666666 3332222211 23556677777777
Q ss_pred CCCCCCChhHHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCC
Q 042884 287 KMNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG 364 (614)
Q Consensus 287 ~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~ 364 (614)
......+ +..+++|+.|++++|.+.... +..+..+.+|+.+++..+.+. .++..+.. +++|+.++++.+....
T Consensus 360 ~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~-l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 360 KGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp CSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTT-CTTCCEEECTTSEEES
T ss_pred cCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccc-cccccchhhhhccccc
Confidence 6653222 345677777777777665322 223345566777777777665 33333333 6677777777665543
Q ss_pred C-CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcCCCcCCccCCcc
Q 042884 365 S-IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKLIGHIPPQ 436 (614)
Q Consensus 365 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~~n~l~~~~~~~ 436 (614)
. .+..|..+++++.++++.|.+. ..+...+..++.++.|++++|++.. ..+++|++|+|++|++++..|.+
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccccccccccccccccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 3 3345666777777777777776 4444555667777777777776432 23577889999999999899999
Q ss_pred ccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC-CCCCeEeccCCcCcccCC-ccccccCC
Q 042884 437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSLAFNNLSGEIP-EWKAQFAT 514 (614)
Q Consensus 437 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~-~~~~~~~~ 514 (614)
|.++++|++|+|++|+++++++..|.++++|++|++++|+|++..|+.|..+ ++|++|++++|+++|.+. .|+..|-.
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988 689999999999998654 23433321
Q ss_pred -cCcccccCCcCCCCCCCC
Q 042884 515 -FNESSYEGNTFLCGLPLP 532 (614)
Q Consensus 515 -l~~~~~~~n~~~c~~~~~ 532 (614)
-...........|.-|..
T Consensus 594 ~~~~~~~~~~~~~C~~P~~ 612 (635)
T 4g8a_A 594 DQRQLLVEVERMECATPSD 612 (635)
T ss_dssp HTTTTBSCGGGCBBCSSTT
T ss_pred hCCCccCCCCCceeCCchH
Confidence 111122234567876654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.3e-38 Score=331.50 Aligned_cols=378 Identities=20% Similarity=0.207 Sum_probs=302.1
Q ss_pred EEeccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC
Q 042884 73 KNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL 152 (614)
Q Consensus 73 ~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L 152 (614)
.++..++.+ ..+|. + .++|++|++++|.+.+ ..|..+.. +++|++|++++|.+.+ .+++..|.++++|
T Consensus 14 ~~~c~~~~l-~~lp~---l--~~~l~~L~Ls~n~i~~--~~~~~~~~-l~~L~~L~L~~n~~~~---~i~~~~~~~l~~L 81 (455)
T 3v47_A 14 NAICINRGL-HQVPE---L--PAHVNYVDLSLNSIAE--LNETSFSR-LQDLQFLKVEQQTPGL---VIRNNTFRGLSSL 81 (455)
T ss_dssp EEECCSSCC-SSCCC---C--CTTCCEEECCSSCCCE--ECTTTTSS-CTTCCEEECCCCSTTC---EECTTTTTTCTTC
T ss_pred ccCcCCCCc-ccCCC---C--CCccCEEEecCCccCc--CChhHhcc-CccccEEECcCCcccc---eECcccccccccC
Confidence 344444443 35663 2 2789999999999984 44677777 9999999999999876 6777689999999
Q ss_pred CeEECcCCccccccCccccCCCCCcEEEcccCCCCCcc-CCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEc
Q 042884 153 QELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSI-ASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDA 231 (614)
Q Consensus 153 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 231 (614)
++|++++|++++..|.+|.++++|++|++++|.+.+.+ +...+..+++|++|++++|.+.+..+...+..+++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 99999999999888999999999999999999998643 33458899999999999999986555445889999999999
Q ss_pred cCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhH-------HhcCCCcc
Q 042884 232 ENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWL-------LENNTKLK 304 (614)
Q Consensus 232 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------~~~~~~L~ 304 (614)
++|.+.+..+..+... ...+|+.|++++|.+.+..+..+ +..+++|+
T Consensus 162 ~~n~l~~~~~~~l~~l--------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 215 (455)
T 3v47_A 162 TFNKVKSICEEDLLNF--------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215 (455)
T ss_dssp TTCCBSCCCTTTSGGG--------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred CCCcccccChhhhhcc--------------------------ccccccccccccCcccccchhhccccccccccccceee
Confidence 9999876544322211 22588999999999984333211 12557899
Q ss_pred EEEccCCCCCCCCCCCCCC---CCccCEEEccCCccccCCC---------hhhhh--cCCCccEEEccCCcCCCCCccch
Q 042884 305 TLFLVNDSLAGPFRLPIHS---HKRLRQLDVSNNNFQGHIP---------LEIGD--ILPNLISFNISMNALDGSIPSSF 370 (614)
Q Consensus 305 ~L~l~~n~i~~~~~~~~~~---l~~L~~L~l~~n~i~~~~~---------~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 370 (614)
+|++++|.+.+..+..+.. .++|+.|++++|.+.+... ...+. ..++|++|++++|.+.+..|..+
T Consensus 216 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp EEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred eEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 9999999998765554433 3789999999986543211 11111 13689999999999999999999
Q ss_pred hccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcC
Q 042884 371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 450 (614)
Q Consensus 371 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 450 (614)
..+++|++|++++|+++ .++...+..++ +|++|++++|.+++..|..|.++++|++|+|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLT------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp TTCTTCCEEECTTSCCC-EECTTTTTTCT------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ccCCCCCEEECCCCccc-ccChhHhcCcc------------------cCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 99999999999999998 44444444444 455566666666667788899999999999999
Q ss_pred CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884 451 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507 (614)
Q Consensus 451 n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 507 (614)
|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++.+|.
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999987777889999999999999999998884
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.9e-38 Score=326.75 Aligned_cols=403 Identities=22% Similarity=0.274 Sum_probs=158.5
Q ss_pred CCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCC
Q 042884 16 SLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHF 94 (614)
Q Consensus 16 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l 94 (614)
+.++|++|++++|.+.. +| +++++++|++|++++|.+.+..|..++.+..++.+.+..|..
T Consensus 9 ~~~~L~~L~l~~n~l~~-----iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------- 70 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTE-----MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------- 70 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred ccccchhhhcccCchhh-----CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence 35677777777777733 34 677777777777777766666666555554432222111110
Q ss_pred CCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884 95 KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT 174 (614)
Q Consensus 95 ~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 174 (614)
.++++|++++|.++ .+|.. .++|++|++++|.++ .+|+ .+++|++|++++|++++ ++.. .+
T Consensus 71 ~~l~~L~l~~~~l~---~lp~~----~~~L~~L~l~~n~l~----~lp~----~~~~L~~L~l~~n~l~~-l~~~---~~ 131 (454)
T 1jl5_A 71 RQAHELELNNLGLS---SLPEL----PPHLESLVASCNSLT----ELPE----LPQSLKSLLVDNNNLKA-LSDL---PP 131 (454)
T ss_dssp HTCSEEECTTSCCS---CCCSC----CTTCSEEECCSSCCS----SCCC----CCTTCCEEECCSSCCSC-CCSC---CT
T ss_pred cCCCEEEecCCccc---cCCCC----cCCCCEEEccCCcCC----cccc----ccCCCcEEECCCCccCc-ccCC---CC
Confidence 12344444444443 22221 234444444444444 2222 12344444444444442 1110 13
Q ss_pred CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccce
Q 042884 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ 254 (614)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 254 (614)
+|++|++++|++. .+|. ++.+++|++|++++|.+++ ++. ...+|+.|++++|.+.+
T Consensus 132 ~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~---------------- 187 (454)
T 1jl5_A 132 LLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE---------------- 187 (454)
T ss_dssp TCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS----------------
T ss_pred CCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc----------------
Confidence 4444444444444 2441 4444444444444444432 221 11244444444443322
Q ss_pred eeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccC
Q 042884 255 YLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN 334 (614)
Q Consensus 255 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 334 (614)
+| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+..++ .+..+++|+.|++++
T Consensus 188 -------------l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 188 -------------LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADN 246 (454)
T ss_dssp -------------CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred -------------Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCC
Confidence 11 23344455555555555542 3321 134555555555555322 244555555555555
Q ss_pred CccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-
Q 042884 335 NNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG- 413 (614)
Q Consensus 335 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~- 413 (614)
|.++ .+|.. +++|++|++++|++++ +|.. .++|++|++++|+++ .+|.. .++|++|++++|++++
T Consensus 247 N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~-~l~~~----~~~L~~L~l~~N~l~~i 312 (454)
T 1jl5_A 247 NLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS-GLSEL----PPNLYYLNASSNEIRSL 312 (454)
T ss_dssp SCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-EESCC----CTTCCEEECCSSCCSEE
T ss_pred CcCC-ccccc----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC-cccCc----CCcCCEEECcCCcCCcc
Confidence 5554 33321 3455555555555553 2221 245555555555554 22211 1345555555555544
Q ss_pred -cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC--CCcccccCC--
Q 042884 414 -KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG--KIPHQLVEL-- 488 (614)
Q Consensus 414 -~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~~~~l~~l-- 488 (614)
..+++|++|++++|++++ +|.. +++|++|++++|+++++ |. .+++|++|++++|++++ .+|..+..+
T Consensus 313 ~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 313 CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM 384 (454)
T ss_dssp CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence 223456666666666654 3332 35666666666666643 33 24566666666666665 455555554
Q ss_pred -----------CCCCeEeccCCcCcc--cCCccccccCCcCcccccCCcCCCC
Q 042884 489 -----------KTLEVFSLAFNNLSG--EIPEWKAQFATFNESSYEGNTFLCG 528 (614)
Q Consensus 489 -----------~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~n~~~c~ 528 (614)
++|+.|++++|++++ .+|. .++.+.+.+|.+.|.
T Consensus 385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP 431 (454)
T ss_dssp CC---------------------------------------------------
T ss_pred cccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence 789999999999986 5664 345556666666554
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.9e-38 Score=327.95 Aligned_cols=401 Identities=22% Similarity=0.235 Sum_probs=195.0
Q ss_pred ccCCccccccCCCCCCCEEECCCcccCCCCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC
Q 042884 5 RDGSKLLQSMGSLPSLNTLYLKHNNFTGTATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN 83 (614)
Q Consensus 5 ~~~~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~ 83 (614)
....++|++++++++|++|++++|.+.+. +| .++.+++|+.++++.|. ...++++++.+|.+.+
T Consensus 21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 21 SNLTEMPVEAENVKSKTEYYNAWSEWERN----APPGNGEQREMAVSRLRDCL-----------DRQAHELELNNLGLSS 85 (454)
T ss_dssp -------------CCHHHHHHHHHHHHHT----SCTTSCCCHHHHHHHHHHHH-----------HHTCSEEECTTSCCSC
T ss_pred CchhhCChhHhcccchhhhhccCCccccc----CCcccccchhcchhhhhhhh-----------ccCCCEEEecCCcccc
Confidence 34468999999999999999999999876 55 78888887555544431 1356666666666542
Q ss_pred CccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccc
Q 042884 84 GVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLR 163 (614)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~ 163 (614)
+|. + .++|++|++++|.++ .+|+. .++|++|++++|.+++ ++. + .++|++|++++|+++
T Consensus 86 -lp~---~--~~~L~~L~l~~n~l~---~lp~~----~~~L~~L~l~~n~l~~----l~~--~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 86 -LPE---L--PPHLESLVASCNSLT---ELPEL----PQSLKSLLVDNNNLKA----LSD--L--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp -CCS---C--CTTCSEEECCSSCCS---SCCCC----CTTCCEEECCSSCCSC----CCS--C--CTTCCEEECCSSCCS
T ss_pred -CCC---C--cCCCCEEEccCCcCC---ccccc----cCCCcEEECCCCccCc----ccC--C--CCCCCEEECcCCCCC
Confidence 442 1 257778888877776 34432 4677888888777762 332 1 157888888888887
Q ss_pred cccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCccccccccc
Q 042884 164 GSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITES 243 (614)
Q Consensus 164 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 243 (614)
+ +| .|.++++|++|++++|+++ .+|.. .++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+... .
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~-~ 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD-L 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC-C
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC-C
Confidence 5 56 4778888888888888877 46642 2578888888887774 43 47777888888888877654211 0
Q ss_pred ccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCC
Q 042884 244 YSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHS 323 (614)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 323 (614)
..+|++|++ +++... .+|. +..+++|++|++++|++. .+|. ..++|++|++++|.+.+++..
T Consensus 214 ------~~~L~~L~l-~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~~~---- 275 (454)
T 1jl5_A 214 ------PLSLESIVA-GNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLPEL---- 275 (454)
T ss_dssp ------CTTCCEEEC-CSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCCCC----
T ss_pred ------cCcccEEEC-cCCcCC-cccc-cCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccccCcc----
Confidence 013444444 222222 2332 444555555555555554 2332 124555555555555543221
Q ss_pred CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884 324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF 403 (614)
Q Consensus 324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 403 (614)
+++|+.|++++|.+++ +|. ..++|++|++++|++++. +. ..++|++|++++|+++ .+|..
T Consensus 276 ~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~-~lp~~---------- 335 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLI-ELPAL---------- 335 (454)
T ss_dssp CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCS-CCCCC----------
T ss_pred cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCccc-ccccc----------
Confidence 2445555555555542 221 023455555555554421 10 0124555555555554 23331
Q ss_pred EEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCC--CCCcCCCCC-------------CCCC
Q 042884 404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG--LIPSTFSNL-------------KHIE 468 (614)
Q Consensus 404 L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~ 468 (614)
+++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+..+ ++|+
T Consensus 336 ------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 336 ------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp ------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------
T ss_pred ------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCC
Confidence 3455555555555552 333 24556666666666655 445555444 8899
Q ss_pred EEEccCCcCCC--CCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884 469 SLDLSYNKLNG--KIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF 512 (614)
Q Consensus 469 ~L~ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 512 (614)
.|++++|++++ .+|. +++.|.+.+|.+.+..+.+...+
T Consensus 400 ~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 400 QLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence 99999999986 4443 46777889999887776654433
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-37 Score=323.81 Aligned_cols=347 Identities=20% Similarity=0.221 Sum_probs=246.9
Q ss_pred CEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCc
Q 042884 98 EHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLR 177 (614)
Q Consensus 98 ~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 177 (614)
+.++.+++.++ .+|..+ .+++++|++++|.++ .+++..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus 14 ~~v~c~~~~l~---~ip~~~---~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 83 (477)
T 2id5_A 14 RAVLCHRKRFV---AVPEGI---PTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83 (477)
T ss_dssp TEEECCSCCCS---SCCSCC---CTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcC---cCCCCC---CCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC
Confidence 45677777666 566654 457888899888887 56555788899999999999999888888899999999
Q ss_pred EEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeee
Q 042884 178 ILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLL 257 (614)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 257 (614)
+|+|++|.+. .+|...|..+++|++|++++|.+.+ +....+..+++|+.|++++|.+....
T Consensus 84 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~----------------- 144 (477)
T 2id5_A 84 TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYIS----------------- 144 (477)
T ss_dssp EEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEEC-----------------
T ss_pred EEECCCCcCC-ccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeC-----------------
Confidence 9999999988 7777778889999999999998874 33356788888888888888776432
Q ss_pred ccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCcc
Q 042884 258 LSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNF 337 (614)
Q Consensus 258 l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i 337 (614)
+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.++.+..|..+++|+.|++++|..
T Consensus 145 -----------~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 145 -----------HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp -----------TTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred -----------hhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 234556788888888888887 56665578888888888888888877777777777788887777766
Q ss_pred ccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccC
Q 042884 338 QGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLS 417 (614)
Q Consensus 338 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 417 (614)
.+.++...+. ..+|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 213 ~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------------ 261 (477)
T 2id5_A 213 LDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS------------------------------ 261 (477)
T ss_dssp CCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC------------------------------
T ss_pred ccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC------------------------------
Confidence 5555555444 335555555555555433344444444444444444443
Q ss_pred CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497 (614)
Q Consensus 418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~ 497 (614)
+..+..|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|+++
T Consensus 262 -------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 262 -------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp -------------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred -------------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 3444556677777777777777777777777778888888888888877666677777888888888
Q ss_pred CCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 498 FNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 498 ~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
+|++.+.++. ..-+.......+.++...|..|
T Consensus 329 ~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 329 SNPLACDCRL-LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SSCEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred CCCccCccch-HhHHhhhhccccCccCceeCCc
Confidence 8888765442 1112223345556666666554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-35 Score=313.09 Aligned_cols=342 Identities=26% Similarity=0.369 Sum_probs=226.1
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM 173 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 173 (614)
+++++.|++.++.+. .++. +.. +++|++|++++|.++ .+++ +..+++|++|++++|.+++..+ +.++
T Consensus 45 l~~l~~L~l~~~~i~---~l~~-~~~-l~~L~~L~Ls~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK---SIDG-VEY-LNNLTQINFSNNQLT----DITP--LKNLTKLVDILMNNNQIADITP--LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCC---CCTT-GGG-CTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred hccccEEecCCCCCc---cCcc-hhh-hcCCCEEECCCCccC----Cchh--hhccccCCEEECCCCccccChh--hcCC
Confidence 456666666666665 3332 444 667777777776665 3333 6666777777777777664443 6667
Q ss_pred CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL 253 (614)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 253 (614)
++|++|++++|.+. .++. +..+++|++|++++|.+.. + ..+..+++|+.|++++ .+..
T Consensus 112 ~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~-~~~~--------------- 169 (466)
T 1o6v_A 112 TNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD-I--SALSGLTSLQQLSFGN-QVTD--------------- 169 (466)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC-C--GGGTTCTTCSEEEEEE-SCCC---------------
T ss_pred CCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCC-C--hhhccCCcccEeecCC-cccC---------------
Confidence 77777777777666 3443 5667777777777776652 2 2356666666666642 2111
Q ss_pred eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEcc
Q 042884 254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVS 333 (614)
Q Consensus 254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 333 (614)
. ..+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 170 --------------~-~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 170 --------------L-KPLANLTTLERLDISSNKVS-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229 (466)
T ss_dssp --------------C-GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred --------------c-hhhccCCCCCEEECcCCcCC-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECC
Confidence 0 11445666777777777665 3332 5566777777777777666443 5556677777777
Q ss_pred CCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc
Q 042884 334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413 (614)
Q Consensus 334 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 413 (614)
+|.++ .++ .+ ..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|+.|++++|++++
T Consensus 230 ~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 230 GNQLK-DIG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLED 301 (466)
T ss_dssp SSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSC
T ss_pred CCCcc-cch-hh-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccC
Confidence 77765 332 22 336777777777777765543 666777777777777776 3333 4566677777777776654
Q ss_pred c----ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC
Q 042884 414 K----VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489 (614)
Q Consensus 414 ~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~ 489 (614)
. .+++|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..++
T Consensus 302 ~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 375 (466)
T 1o6v_A 302 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT 375 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred chhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence 2 35677888888888876654 67888999999999988876 468888999999999999987766 78888
Q ss_pred CCCeEeccCCcCccc
Q 042884 490 TLEVFSLAFNNLSGE 504 (614)
Q Consensus 490 ~L~~L~l~~N~l~~~ 504 (614)
+|+.|++++|++++.
T Consensus 376 ~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 376 RITQLGLNDQAWTNA 390 (466)
T ss_dssp TCCEEECCCEEEECC
T ss_pred CCCEEeccCCcccCC
Confidence 999999999988863
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=320.41 Aligned_cols=325 Identities=18% Similarity=0.196 Sum_probs=240.8
Q ss_pred CEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEE
Q 042884 125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEEL 204 (614)
Q Consensus 125 ~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 204 (614)
+.++.+++.++ .+|. .+. ++++.|++++|++++..+..|.++++|++|+|++|.+. .++...|.++++|++|
T Consensus 14 ~~v~c~~~~l~----~ip~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L 85 (477)
T 2id5_A 14 RAVLCHRKRFV----AVPE-GIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTL 85 (477)
T ss_dssp TEEECCSCCCS----SCCS-CCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcC----cCCC-CCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEE
Confidence 34555555554 3443 221 35566666666665555555555566666666655555 3322335555555555
Q ss_pred EcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEcc
Q 042884 205 HLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLS 284 (614)
Q Consensus 205 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls 284 (614)
++++|.++ .++... +..+++|++|+++
T Consensus 86 ~L~~n~l~-~~~~~~----------------------------------------------------~~~l~~L~~L~Ls 112 (477)
T 2id5_A 86 GLRSNRLK-LIPLGV----------------------------------------------------FTGLSNLTKLDIS 112 (477)
T ss_dssp ECCSSCCC-SCCTTS----------------------------------------------------STTCTTCCEEECT
T ss_pred ECCCCcCC-ccCccc----------------------------------------------------ccCCCCCCEEECC
Confidence 55555544 222222 3345566666666
Q ss_pred CCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCC
Q 042884 285 HTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDG 364 (614)
Q Consensus 285 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~ 364 (614)
+|.+.+..+.. |..+++|++|++++|.+.++.+..|..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.+
T Consensus 113 ~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 113 ENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcE
Confidence 66665333333 667777777788777777777777888888899999998887 6776666668999999999999988
Q ss_pred CCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCC
Q 042884 365 SIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ 444 (614)
Q Consensus 365 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 444 (614)
..+..|..+++|+.|++++|...+.+|...+. ..+|++|++++|++++..+..|..+++|+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred eChhhcccCcccceeeCCCCccccccCccccc-------------------CccccEEECcCCcccccCHHHhcCccccC
Confidence 88888889999999999998877677766542 23566677777777756557899999999
Q ss_pred EEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCc
Q 042884 445 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNT 524 (614)
Q Consensus 445 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~ 524 (614)
+|+|++|.+++..+..|..+++|++|++++|++.+..|..|..+++|+.|++++|++++..+..+..+++++.+++++||
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999998877778889999999999999
Q ss_pred CCCCCCC
Q 042884 525 FLCGLPL 531 (614)
Q Consensus 525 ~~c~~~~ 531 (614)
+.|+|+.
T Consensus 332 l~c~c~~ 338 (477)
T 2id5_A 332 LACDCRL 338 (477)
T ss_dssp EECSGGG
T ss_pred ccCccch
Confidence 9999864
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.7e-36 Score=313.16 Aligned_cols=357 Identities=17% Similarity=0.177 Sum_probs=246.8
Q ss_pred ccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCC
Q 042884 13 SMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFP 92 (614)
Q Consensus 13 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~ 92 (614)
+++++++|++|++++|.++++ +.+..+++|++|++++|.+.+ ++ ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~~-------------------------~~----~~ 82 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-----TGIEKLTGLTKLICTSNNITT-------------------------LD----LS 82 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-----TTGGGCTTCSEEECCSSCCSC-------------------------CC----CT
T ss_pred ChhHcCCCCEEEccCCCcccC-----hhhcccCCCCEEEccCCcCCe-------------------------Ec----cc
Confidence 445555666666666655543 245555555555555555442 11 45
Q ss_pred CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccC
Q 042884 93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVAN 172 (614)
Q Consensus 93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 172 (614)
.+++|++|++++|.+++ ++ +.. +++|++|++++|.+++ ++ +..+++|++|++++|++++. + +..
T Consensus 83 ~l~~L~~L~Ls~N~l~~---~~--~~~-l~~L~~L~L~~N~l~~----l~---~~~l~~L~~L~l~~N~l~~l-~--l~~ 146 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTN---LD--VTP-LTKLTYLNCDTNKLTK----LD---VSQNPLLTYLNCARNTLTEI-D--VSH 146 (457)
T ss_dssp TCTTCSEEECCSSCCSC---CC--CTT-CTTCCEEECCSSCCSC----CC---CTTCTTCCEEECTTSCCSCC-C--CTT
T ss_pred cCCCCCEEECcCCCCce---ee--cCC-CCcCCEEECCCCcCCe----ec---CCCCCcCCEEECCCCcccee-c--ccc
Confidence 56677777777777663 22 444 7777777777777763 22 66777777777777777753 2 667
Q ss_pred CCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcc
Q 042884 173 MTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQ 252 (614)
Q Consensus 173 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 252 (614)
+++|++|++++|...+.++ +..+++|++|++++|.+++ ++ +..+++|+.|++++|.+.+.
T Consensus 147 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~------------- 206 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL------------- 206 (457)
T ss_dssp CTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC-------------
T ss_pred CCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee-------------
Confidence 7777777777775444552 5677777777777777763 33 56677777777777766532
Q ss_pred ceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEc
Q 042884 253 LQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDV 332 (614)
Q Consensus 253 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 332 (614)
.+..+++|++|++++|++.+ +| +..+++|++|++++|.+++.+ ...+++|+.|++
T Consensus 207 ------------------~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l 261 (457)
T 3bz5_A 207 ------------------DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHC 261 (457)
T ss_dssp ------------------CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred ------------------ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEec
Confidence 13356777888888888774 55 567778888888888877754 345667777777
Q ss_pred cCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccc
Q 042884 333 SNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLE 412 (614)
Q Consensus 333 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 412 (614)
++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ....|+.+++++|
T Consensus 262 ~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~~--- 317 (457)
T 3bz5_A 262 IQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQN--- 317 (457)
T ss_dssp TTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTTC---
T ss_pred cCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc----CCCcceEechhhc---
Confidence 654 34556677777666655 46778888889988887767764 3467777777765
Q ss_pred ccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 042884 413 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492 (614)
Q Consensus 413 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~ 492 (614)
++|++|++++|++++. + ++.+++|+.|++++|+++++ +.|+.|++++|.+.+. ..+..|+
T Consensus 318 ----~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~ 377 (457)
T 3bz5_A 318 ----PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMP 377 (457)
T ss_dssp ----TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECC
T ss_pred ----ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecC
Confidence 5789999999999874 3 88899999999999999862 4667778999988865 2445688
Q ss_pred eEeccCCcCcccCCcc
Q 042884 493 VFSLAFNNLSGEIPEW 508 (614)
Q Consensus 493 ~L~l~~N~l~~~~~~~ 508 (614)
.+++++|+++|.+|..
T Consensus 378 ~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 378 KETLTNNSLTIAVSPD 393 (457)
T ss_dssp CBCCBTTBEEEECCTT
T ss_pred ccccccCcEEEEcChh
Confidence 8899999999988863
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-34 Score=306.18 Aligned_cols=345 Identities=24% Similarity=0.316 Sum_probs=193.9
Q ss_pred CCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccCCccCCCCCCCCCC
Q 042884 17 LPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVNGVVRGQGFPHFKS 96 (614)
Q Consensus 17 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~l~~ 96 (614)
++++++|+++++.++.+ +.+..+++|++|++++|.+.+..+ +. ++++
T Consensus 45 l~~l~~L~l~~~~i~~l-----~~~~~l~~L~~L~Ls~n~l~~~~~--~~--------------------------~l~~ 91 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITP--LK--------------------------NLTK 91 (466)
T ss_dssp HHTCCEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GT--------------------------TCTT
T ss_pred hccccEEecCCCCCccC-----cchhhhcCCCEEECCCCccCCchh--hh--------------------------cccc
Confidence 56677777777666543 345666677777777666553322 44 4455
Q ss_pred CCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCC
Q 042884 97 LEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSL 176 (614)
Q Consensus 97 L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 176 (614)
|++|++++|.+.+ ++. +.. +++|++|++++|.++ .+++ +..+++|++|++++|.+++. + .+..+++|
T Consensus 92 L~~L~l~~n~l~~---~~~-~~~-l~~L~~L~L~~n~l~----~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L 158 (466)
T 1o6v_A 92 LVDILMNNNQIAD---ITP-LAN-LTNLTGLTLFNNQIT----DIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSL 158 (466)
T ss_dssp CCEEECCSSCCCC---CGG-GTT-CTTCCEEECCSSCCC----CCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTC
T ss_pred CCEEECCCCcccc---Chh-hcC-CCCCCEEECCCCCCC----CChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcc
Confidence 5555555555542 222 333 555555555555554 2222 55555555555555555532 2 35555556
Q ss_pred cEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceee
Q 042884 177 RILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYL 256 (614)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 256 (614)
++|+++ |.+. .++. +..+++|++|++++|.+.. + ..+..+++|+.|++++|.+.+..+
T Consensus 159 ~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~--------------- 216 (466)
T 1o6v_A 159 QQLSFG-NQVT-DLKP--LANLTTLERLDISSNKVSD-I--SVLAKLTNLESLIATNNQISDITP--------------- 216 (466)
T ss_dssp SEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG---------------
T ss_pred cEeecC-Cccc-Cchh--hccCCCCCEEECcCCcCCC-C--hhhccCCCCCEEEecCCccccccc---------------
Confidence 666554 2333 2221 4555666666666665542 1 235555666666666655443211
Q ss_pred eccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCc
Q 042884 257 LLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 336 (614)
Q Consensus 257 ~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 336 (614)
+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 217 ---------------~~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 217 ---------------LGILTNLDELSLNGNQLKD-IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276 (466)
T ss_dssp ---------------GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred ---------------ccccCCCCEEECCCCCccc-chh--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc
Confidence 2335566666666666652 332 4566666666666666665443 5666677777777777
Q ss_pred cccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccccc
Q 042884 337 FQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVL 416 (614)
Q Consensus 337 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 416 (614)
++ .++. +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..+++|++|++++|
T Consensus 277 l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n------- 341 (466)
T 1o6v_A 277 IS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN------- 341 (466)
T ss_dssp CC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-------
T ss_pred cC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-------
Confidence 76 3333 3336777777777777765433 6677777777777777764333 234444444444443
Q ss_pred CCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884 417 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479 (614)
Q Consensus 417 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 479 (614)
++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++
T Consensus 342 -----------~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 342 -----------KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -----------CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -----------ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 33322 245666677777777777766554 6666777777777776664
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-34 Score=298.59 Aligned_cols=335 Identities=20% Similarity=0.246 Sum_probs=185.1
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM 173 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 173 (614)
++++++|+++++.+. .+|..+...+++|++|++++|.+. .+++..|..+++|++|++++|.+++..|..|.++
T Consensus 44 l~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GCCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCceEEEecCCchh---hCChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 355566666655554 444443322555666666555554 3443355555555555555555555555555555
Q ss_pred CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL 253 (614)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 253 (614)
++|++|++++|.+. .+|...|..+++|++|++++|.+. .++...+..++
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~----------------------------- 165 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATT----------------------------- 165 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCT-----------------------------
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCC-----------------------------
Confidence 55555555555555 455544555555555555555554 22223344444
Q ss_pred eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEcc
Q 042884 254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVS 333 (614)
Q Consensus 254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 333 (614)
+|++|++++|.+.+ ++ +..+++|++|++++|.+.+. ...++|+.|+++
T Consensus 166 -----------------------~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~ 213 (390)
T 3o6n_A 166 -----------------------SLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS 213 (390)
T ss_dssp -----------------------TCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECC
T ss_pred -----------------------CCCEEECCCCcCCc-cc---cccccccceeeccccccccc-----CCCCcceEEECC
Confidence 44445554444442 22 23445555555555544432 122356666666
Q ss_pred CCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc
Q 042884 334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413 (614)
Q Consensus 334 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 413 (614)
+|.+. .+|... .++|++|++++|.+++. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|
T Consensus 214 ~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n---- 282 (390)
T 3o6n_A 214 HNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNN---- 282 (390)
T ss_dssp SSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSS----
T ss_pred CCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCC----
Confidence 66665 333322 35666666666666643 45666666777777777666333332 334444444433333
Q ss_pred cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCe
Q 042884 414 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 493 (614)
Q Consensus 414 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~ 493 (614)
++++ +|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++.. | +..+++|+.
T Consensus 283 --------------~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 283 --------------RLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp --------------CCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred --------------cCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 3332 23334566777888888887774 345566777888888888887744 3 566778888
Q ss_pred EeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 494 FSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 494 L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
|++++|++.+.... ..+..+....+.+++..|.++
T Consensus 344 L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 344 LTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp EECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred EEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence 88888888764322 223445555566777777654
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-33 Score=296.62 Aligned_cols=355 Identities=18% Similarity=0.198 Sum_probs=189.1
Q ss_pred CCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccc
Q 042884 91 FPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV 170 (614)
Q Consensus 91 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 170 (614)
++++++|++|++++|.+.+ +| .+.. +++|++|++++|.+++ ++ ++.+++|++|++++|++++. + +
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~---~~-~l~~-l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITD---MT-GIEK-LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp HHHHTTCCEEECCSSCCCC---CT-TGGG-CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred hhHcCCCCEEEccCCCccc---Ch-hhcc-cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee-e--c
Confidence 3344455555555554442 22 2333 4555555555555442 11 44455555555555555432 2 4
Q ss_pred cCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCC
Q 042884 171 ANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPN 250 (614)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 250 (614)
.++++|++|++++|++. .++ ++.+++|++|++++|.+++ + .+..+++|+.|++++|...+..+ ....
T Consensus 103 ~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~~-----~~~l 169 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKLD-----VTPQ 169 (457)
T ss_dssp TTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCCC-----CTTC
T ss_pred CCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccccc-----cccC
Confidence 45555555555555554 232 4445555555555555442 1 13444455555555443211100 0000
Q ss_pred ccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEE
Q 042884 251 FQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQL 330 (614)
Q Consensus 251 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 330 (614)
.+|+.|++ +++...+ +| +..+++|+.|++++|.+++ ++ +..+++|++|++++|++++++ +..+++|+.|
T Consensus 170 ~~L~~L~l-s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L 238 (457)
T 3bz5_A 170 TQLTTLDC-SFNKITE-LD--VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYF 238 (457)
T ss_dssp TTCCEEEC-CSSCCCC-CC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEE
T ss_pred CcCCEEEC-CCCccce-ec--cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC---ccccCCCCEE
Confidence 01111111 0000000 11 2344455555555555542 22 344555555555555555421 4445555555
Q ss_pred EccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCc
Q 042884 331 DVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNS 410 (614)
Q Consensus 331 ~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 410 (614)
++++|.+++ +|. ..+++|+.|++++| +|+.|++++|.+.+.+|. ..+++|+.|++++|.
T Consensus 239 ~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 239 DCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNT 297 (457)
T ss_dssp ECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCT
T ss_pred EeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCc
Confidence 555555542 221 11444555554443 355667777776666663 567888888888887
Q ss_pred ccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 042884 411 LEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 490 (614)
Q Consensus 411 l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~ 490 (614)
..+..+ .+.+.++.. .++++++|++|++++|++++. + ++.+++|+.|++++|++++ ++.
T Consensus 298 ~l~~l~-------~~~~~L~~L---~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 298 QLYLLD-------CQAAGITEL---DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp TCCEEE-------CTTCCCSCC---CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred ccceec-------cCCCcceEe---chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccc
Confidence 654322 233333322 255668999999999999985 2 8899999999999999985 256
Q ss_pred CCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 491 LEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 491 L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
|+.|++++|.+++. ..+..+..++++.|.+....|.
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 77888999999876 3456677888888887655443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-34 Score=293.54 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=215.2
Q ss_pred CCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCcc
Q 042884 148 SLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLK 227 (614)
Q Consensus 148 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 227 (614)
.+++++.|++++|.++...+..|..+++|++|++++|.+. .++...|..+++|++|++++|.+. .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 3578888888888887555555778888888888888887 566556788888888888888776 33334566666666
Q ss_pred EEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEE
Q 042884 228 IFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLF 307 (614)
Q Consensus 228 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 307 (614)
.|++++|.+..... ..+..+++|++|++++|.+.+..+. .+..+++|++|+
T Consensus 121 ~L~L~~n~l~~l~~----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 171 (390)
T 3o6n_A 121 VLVLERNDLSSLPR----------------------------GIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQ 171 (390)
T ss_dssp EEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEE
T ss_pred EEECCCCccCcCCH----------------------------HHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEE
Confidence 66666665542211 1234455666666666666533232 245556666666
Q ss_pred ccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccC
Q 042884 308 LVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLT 387 (614)
Q Consensus 308 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 387 (614)
+++|.+++. .+..+++|+.|++++|.++ .++ ..++|++|++++|.+... |.. ..++|+.|++++|.++
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT 239 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred CCCCcCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence 666655543 2344455555555555554 111 134455555555555432 111 1245555555555554
Q ss_pred CcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCC
Q 042884 388 GEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 467 (614)
Q Consensus 388 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 467 (614)
+ .+ .+ ..+++|++|++++|.+++..|..|..+++|++|++++|++++. |..+..+++|
T Consensus 240 ~-~~--~l------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L 297 (390)
T 3o6n_A 240 D-TA--WL------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 297 (390)
T ss_dssp C-CG--GG------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTC
T ss_pred c-cH--HH------------------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCC
Confidence 2 11 11 2356777888888888878889999999999999999999865 5566889999
Q ss_pred CEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCCCCC
Q 042884 468 ESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 534 (614)
Q Consensus 468 ~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~c 534 (614)
++|++++|++. .+|..+..+++|++|++++|+++.. + +..+++++.+++++||+.|+|....+
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHH
Confidence 99999999999 5677788899999999999999854 3 56788999999999999998755433
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.7e-33 Score=282.01 Aligned_cols=304 Identities=23% Similarity=0.322 Sum_probs=179.9
Q ss_pred CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCC
Q 042884 121 TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTS 200 (614)
Q Consensus 121 l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 200 (614)
+++|++|+++++.+. .++ ++..+++|++|++++|++++..+ +..+++|++|++++|.+. .++. +..+++
T Consensus 43 l~~L~~L~l~~~~i~----~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEKVA----SIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSCCC----CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred cccccEEEEeCCccc----cch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence 667777777777665 333 36667777777777777764333 667777777777777766 4442 666777
Q ss_pred CCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcE
Q 042884 201 IEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY 280 (614)
Q Consensus 201 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 280 (614)
|++|++++|.+.. ++ .+..+++|+.|++++|..... +..+..+++|++
T Consensus 112 L~~L~l~~n~i~~-~~--~~~~l~~L~~L~l~~n~~~~~-----------------------------~~~~~~l~~L~~ 159 (347)
T 4fmz_A 112 LRELYLNEDNISD-IS--PLANLTKMYSLNLGANHNLSD-----------------------------LSPLSNMTGLNY 159 (347)
T ss_dssp CSEEECTTSCCCC-CG--GGTTCTTCCEEECTTCTTCCC-----------------------------CGGGTTCTTCCE
T ss_pred CCEEECcCCcccC-ch--hhccCCceeEEECCCCCCccc-----------------------------ccchhhCCCCcE
Confidence 7777777776652 22 255666666666666532211 122455666777
Q ss_pred EEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCC
Q 042884 281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMN 360 (614)
Q Consensus 281 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n 360 (614)
|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|++++|
T Consensus 160 L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 160 LTVTESKVKD-VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp EECCSSCCCC-CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSS
T ss_pred EEecCCCcCC-chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCC
Confidence 7777766653 332 4566666666666666665433 555666666666666665 2322 223566666666666
Q ss_pred cCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCC
Q 042884 361 ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNL 440 (614)
Q Consensus 361 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 440 (614)
.+++..+ +..+++|++|++++|.++ .++. +.. +++|++|++++|++++. ..+..+
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~------------------l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQIS-DINA--VKD------------------LTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTT------------------CTTCCEEECCSSCCCCC--GGGGGC
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccC-CChh--Hhc------------------CCCcCEEEccCCccCCC--hhhcCC
Confidence 6654332 555666666666666555 2221 222 33444444455555433 346666
Q ss_pred CcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc
Q 042884 441 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 441 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 502 (614)
++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777777777777776666667777777777777777765544 666777777777777664
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-33 Score=305.04 Aligned_cols=335 Identities=20% Similarity=0.247 Sum_probs=185.5
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM 173 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 173 (614)
+++++.++++++.+. .+|..+...+++|++|++++|.+. .+++..|..+++|++|++++|.+++..|..|.++
T Consensus 50 l~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 344555555555544 344333222555555555555544 2333345555555555555555554444445555
Q ss_pred CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL 253 (614)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 253 (614)
++|++|+|++|.+. .+|...|+.+++|++|++++|.+.+ ++...+.
T Consensus 123 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-------------------------------- 168 (597)
T 3oja_B 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQ-------------------------------- 168 (597)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTT--------------------------------
T ss_pred CCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC-CChhhhh--------------------------------
Confidence 55555555555554 4444444455555555555554442 2222333
Q ss_pred eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEcc
Q 042884 254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVS 333 (614)
Q Consensus 254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 333 (614)
.+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+.+. ...++|+.|+++
T Consensus 169 --------------------~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls 219 (597)
T 3oja_B 169 --------------------ATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS 219 (597)
T ss_dssp --------------------TCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECC
T ss_pred --------------------cCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCccccc-----cCCchhheeecc
Confidence 44455555555555542 22 23455555555555555432 223456666666
Q ss_pred CCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc
Q 042884 334 NNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG 413 (614)
Q Consensus 334 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 413 (614)
+|.+. .++... .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+ ..+++|+.|++++
T Consensus 220 ~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~----- 287 (597)
T 3oja_B 220 HNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISN----- 287 (597)
T ss_dssp SSCCC-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTT-----
T ss_pred CCccc-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCC-----
Confidence 66665 333322 35677777777776642 556667777777777777764434333 3444444443333
Q ss_pred cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCe
Q 042884 414 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 493 (614)
Q Consensus 414 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~ 493 (614)
|.+++ +|..+..+++|++|+|++|.+++ +|..+..+++|+.|++++|.+.+. | +..+++|+.
T Consensus 288 -------------N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~ 349 (597)
T 3oja_B 288 -------------NRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 349 (597)
T ss_dssp -------------SCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred -------------CCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCE
Confidence 33332 23445567788888888888874 455667788888888888888754 2 566788889
Q ss_pred EeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 494 FSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 494 L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
|++++|++.|.... ..+..+....+.+++..|..+
T Consensus 350 L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 350 LTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp EECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred EEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 99999988865332 223445555567777777653
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.5e-32 Score=274.72 Aligned_cols=308 Identities=25% Similarity=0.355 Sum_probs=255.2
Q ss_pred CCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCcc
Q 042884 90 GFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWC 169 (614)
Q Consensus 90 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 169 (614)
.+..+++|++|+++++.+. .++. +.. +++|++|++++|.++ .+++ +..+++|++|++++|.+++. .+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~---~~~~-~~~-~~~L~~L~l~~n~i~----~~~~--~~~l~~L~~L~L~~n~i~~~--~~ 105 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA---SIQG-IEY-LTNLEYLNLNGNQIT----DISP--LSNLVKLTNLYIGTNKITDI--SA 105 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC---CCTT-GGG-CTTCCEEECCSSCCC----CCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cchhcccccEEEEeCCccc---cchh-hhh-cCCccEEEccCCccc----cchh--hhcCCcCCEEEccCCcccCc--hH
Confidence 3567899999999999987 4443 666 999999999999998 4554 89999999999999999853 46
Q ss_pred ccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCC
Q 042884 170 VANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTP 249 (614)
Q Consensus 170 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 249 (614)
+..+++|++|++++|.+. .++. +..+++|++|++++|.....+ ..+..+++|+.|++++|.+....
T Consensus 106 ~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~--------- 171 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVT--------- 171 (347)
T ss_dssp GTTCTTCSEEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCG---------
T ss_pred HcCCCcCCEEECcCCccc-Cchh--hccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCch---------
Confidence 999999999999999998 5655 789999999999999665343 34889999999999998875431
Q ss_pred CccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCE
Q 042884 250 NFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQ 329 (614)
Q Consensus 250 ~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 329 (614)
.+..+++|++|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|++
T Consensus 172 ---------------------~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 225 (347)
T 4fmz_A 172 ---------------------PIANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225 (347)
T ss_dssp ---------------------GGGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred ---------------------hhccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence 1557889999999999998 4554 7889999999999999998655 788999999
Q ss_pred EEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCC
Q 042884 330 LDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNN 409 (614)
Q Consensus 330 L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 409 (614)
|++++|.++ .++. +..+++|++|++++|.+++. ..+..+++|++|++++|.++ .++. +..
T Consensus 226 L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--~~~------------ 285 (347)
T 4fmz_A 226 LKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DISV--LNN------------ 285 (347)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGG------------
T ss_pred EEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CChh--hcC------------
Confidence 999999998 5555 44599999999999999864 56899999999999999998 4432 333
Q ss_pred cccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884 410 SLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478 (614)
Q Consensus 410 ~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 478 (614)
+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..+++|++|++++|.|+
T Consensus 286 ------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 ------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4556666666677776777889999999999999999997766 888999999999999886
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.1e-33 Score=301.46 Aligned_cols=313 Identities=19% Similarity=0.203 Sum_probs=201.0
Q ss_pred CCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEE
Q 042884 150 MHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229 (614)
Q Consensus 150 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 229 (614)
++++.+++++|.+....+..|..+++|++|++++|.+. .++...|..+++|++|++++|.+.+ ++...|.++++|+.|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEE
Confidence 34445555555544333334444555555555555554 3333334555555555555555442 222334444444444
Q ss_pred EccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884 230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV 309 (614)
Q Consensus 230 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 309 (614)
++++|.+.... +..+..+++|++|++++|.+.+..|.. |..+++|++|+++
T Consensus 129 ~L~~n~l~~l~----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~ 179 (597)
T 3oja_B 129 VLERNDLSSLP----------------------------RGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLS 179 (597)
T ss_dssp ECCSSCCCCCC----------------------------TTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECT
T ss_pred EeeCCCCCCCC----------------------------HHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECc
Confidence 44444433211 122345667777777777777444433 6667777777777
Q ss_pred CCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCc
Q 042884 310 NDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE 389 (614)
Q Consensus 310 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 389 (614)
+|.+.+. .+..+++|+.|++++|.+++ ++ ..++|+.|++++|.+....+.. .++|+.|++++|.+++
T Consensus 180 ~N~l~~~---~~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 180 SNRLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD- 246 (597)
T ss_dssp TSCCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC-
T ss_pred CCCCCCc---ChhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC-
Confidence 7776654 24455666777777766652 21 1455666666666665332221 2456666666666653
Q ss_pred CCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCE
Q 042884 390 IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 469 (614)
Q Consensus 390 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 469 (614)
. .. +. .+++|+.|+|++|.+++..|..|..+++|+.|+|++|.++++ |..+..+++|+.
T Consensus 247 ~-~~-l~------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~ 305 (597)
T 3oja_B 247 T-AW-LL------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKV 305 (597)
T ss_dssp C-GG-GG------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCE
T ss_pred C-hh-hc------------------cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcE
Confidence 1 11 12 356677777888888888889999999999999999999975 666788999999
Q ss_pred EEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 470 LDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 470 L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
|++++|.+. .+|..+..+++|+.|++++|++++.. +..++.++.+++++|||.|+|..
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence 999999999 67888889999999999999998653 45678999999999999998744
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-33 Score=278.99 Aligned_cols=252 Identities=31% Similarity=0.542 Sum_probs=175.7
Q ss_pred CCcEEEccCCCCCC--CCChhHHhcCCCccEEEccC-CCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 277 DLEYVDLSHTKMNG--EFPNWLLENNTKLKTLFLVN-DSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
+++.|++++|.+.+ .+|.. +..+++|++|++++ |.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCC
T ss_pred eEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCC
Confidence 44555555555554 44443 44555555555552 5555444444555555555555555555444444433 55555
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC-CCCEEEccCCcccccc------cCCccEEEcCC
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV-YLDFLALSNNSLEGKV------LSLLSGLDLSC 426 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~------~~~L~~L~L~~ 426 (614)
+|++++|.+++..|..+..+++|++|++++|++++.+|..+. .++ .|++|++++|++++.. ++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 555555555555555555555555555555555544554442 333 5555555555554321 23 88888888
Q ss_pred CcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 427 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 427 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
|++++..|..|..+++|++|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 888888999999999999999999999977666 8889999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCcccccCCcCCCCCCCCCC
Q 042884 507 EWKAQFATFNESSYEGNTFLCGLPLPIC 534 (614)
Q Consensus 507 ~~~~~~~~l~~~~~~~n~~~c~~~~~~c 534 (614)
.. ..+++++.+++.+||+.|+.|.+.|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred CC-ccccccChHHhcCCCCccCCCCCCC
Confidence 85 8899999999999999999888777
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.3e-30 Score=260.65 Aligned_cols=200 Identities=18% Similarity=0.240 Sum_probs=129.9
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCC--CCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG--PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ .+|... .++|+
T Consensus 121 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~ 195 (330)
T 1xku_A 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLT 195 (330)
T ss_dssp TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCS
T ss_pred ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCC
Confidence 35666666666666 3444446667777777777776643 44555667777777777777776 566544 26777
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI 433 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~ 433 (614)
+|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++ |++|++++|+++ .+
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~------------------L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPH------------------LRELHLNNNKLV-KV 255 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTT------------------CCEEECCSSCCS-SC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCC------------------CCEEECCCCcCc-cC
Confidence 8888888777777777777788888888888776 344333333333 444444444444 45
Q ss_pred CccccCCCcCCEEECcCCcCCCCCCcCCCCC------CCCCEEEccCCcCCC--CCcccccCCCCCCeEeccCCc
Q 042884 434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL------KHIESLDLSYNKLNG--KIPHQLVELKTLEVFSLAFNN 500 (614)
Q Consensus 434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~ 500 (614)
|..+..+++|++|++++|++++..+..|... ++++.|++++|.+.. +.|..|..++.++.+++++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5667777788888888888877766666533 677778888887753 556677777777777777774
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-30 Score=262.17 Aligned_cols=288 Identities=17% Similarity=0.218 Sum_probs=193.3
Q ss_pred CCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEE
Q 042884 151 HLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFD 230 (614)
Q Consensus 151 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 230 (614)
+++.++++++.++ .+|..+. ++|+.|++++|.+. .++...|..+++|++|++++|.++ .+....+..+++|+.|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 4666666666665 4444432 46666666666666 444444666666666666666665 33334566666677777
Q ss_pred ccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccC
Q 042884 231 AENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVN 310 (614)
Q Consensus 231 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 310 (614)
+++|.+... |..+. ++|++|++++|.+. .+|...|..+++|++|++++
T Consensus 109 L~~n~l~~l-----------------------------~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 109 ISKNHLVEI-----------------------------PPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCSSCCCSC-----------------------------CSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCS
T ss_pred CCCCcCCcc-----------------------------Ccccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCC
Confidence 666665422 11111 57777777777777 45544477788888888888
Q ss_pred CCCCC--CCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCC
Q 042884 311 DSLAG--PFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTG 388 (614)
Q Consensus 311 n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 388 (614)
|.+.. ..+..+..+ +|+.|++++|.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~- 230 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR- 230 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-
T ss_pred CccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-
Confidence 87753 556667667 8888888888887 577654 367888888888888777788888888888888888887
Q ss_pred cCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCC----
Q 042884 389 EIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL---- 464 (614)
Q Consensus 389 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---- 464 (614)
.++...+..+++| ++|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus 231 ~~~~~~~~~l~~L------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 231 MIENGSLSFLPTL------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp CCCTTGGGGCTTC------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred cCChhHhhCCCCC------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 4444444444444 44444445555 556667788888888888888887777766553
Q ss_pred --CCCCEEEccCCcCC--CCCcccccCCCCCCeEeccCCc
Q 042884 465 --KHIESLDLSYNKLN--GKIPHQLVELKTLEVFSLAFNN 500 (614)
Q Consensus 465 --~~L~~L~ls~N~l~--~~~~~~l~~l~~L~~L~l~~N~ 500 (614)
++|+.|++++|.+. ...|..|..++.|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56788888888776 5677777778888888887774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.3e-30 Score=260.62 Aligned_cols=251 Identities=18% Similarity=0.274 Sum_probs=158.0
Q ss_pred CCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCC
Q 042884 95 KSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMT 174 (614)
Q Consensus 95 ~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 174 (614)
.+++.++++++.+. .+|..+ .+++++|++++|.++ .+++..|.++++|++|++++|++++..|.+|.+++
T Consensus 31 c~l~~l~~~~~~l~---~lp~~~---~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 31 CHLRVVQCSDLGLE---KVPKDL---PPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EETTEEECTTSCCC---SCCCSC---CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCCeEEEecCCCcc---ccCccC---CCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 36777787777766 555543 357788888888877 45555678888888888888888877788888888
Q ss_pred CCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccce
Q 042884 175 SLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQ 254 (614)
Q Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 254 (614)
+|++|++++|.+. .+|...+ ++|++|++++|.+. .++...+..+++|+.|++++|.+...
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 160 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS--------------- 160 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGG---------------
T ss_pred CCCEEECCCCcCC-ccChhhc---ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCcc---------------
Confidence 8888888888887 6776533 67888888888776 44445567777777777777765431
Q ss_pred eeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccC
Q 042884 255 YLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSN 334 (614)
Q Consensus 255 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 334 (614)
+..+..+..+++|++|++++|.+. .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 161 -----------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 161 -----------GIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp -----------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred -----------CcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 112334556667777777777766 445432 25566666666666555555555555566666665
Q ss_pred CccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCch
Q 042884 335 NNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEH 393 (614)
Q Consensus 335 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 393 (614)
|.+++ ++...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .++..
T Consensus 226 n~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~ 281 (330)
T 1xku_A 226 NSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN 281 (330)
T ss_dssp SCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred CcCce-eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChh
Confidence 55553 22222223555555555555555 34444555555555555555555 34433
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-30 Score=260.98 Aligned_cols=251 Identities=21% Similarity=0.287 Sum_probs=185.1
Q ss_pred CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCC
Q 042884 96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS 175 (614)
Q Consensus 96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 175 (614)
+++.++++++.+. .+|..+ .++|++|++++|.+. .+++..|.++++|++|++++|++++..|.+|.++++
T Consensus 34 ~l~~l~~~~~~l~---~ip~~~---~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---AVPKEI---SPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCS---SCCSCC---CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCCcc---ccCCCC---CCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 5788888888876 566654 468888999988887 565557888999999999999998877888999999
Q ss_pred CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884 176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255 (614)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 255 (614)
|++|++++|.+. .+|...+ ++|++|++++|.+. .++...+..+++|+.|++++|.+....
T Consensus 104 L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------- 163 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG--------------- 163 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG---------------
T ss_pred CCEEECCCCcCC-ccCcccc---ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC---------------
Confidence 999999999988 7777533 78899999999887 555566788888888888888775321
Q ss_pred eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC
Q 042884 256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 335 (614)
Q Consensus 256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 335 (614)
..|..+..+ +|+.|++++|.+. .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 164 -----------~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 164 -----------FEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp -----------SCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred -----------CCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 112334444 7888888888887 466542 267777888888877777677777777888888877
Q ss_pred ccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhh
Q 042884 336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLA 395 (614)
Q Consensus 336 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 395 (614)
.++ .++...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .++...|
T Consensus 228 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~ 284 (332)
T 2ft3_A 228 QIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDF 284 (332)
T ss_dssp CCC-CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSS
T ss_pred cCC-cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHc
Confidence 777 344433344777777777777777 55666777777777777777776 5554443
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.7e-34 Score=301.22 Aligned_cols=366 Identities=19% Similarity=0.172 Sum_probs=209.0
Q ss_pred CCCCEEeCcCcccCCCcchhhH-hhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccc-cC
Q 042884 95 KSLEHLNMERARIAPNTSFLQI-IGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCV-AN 172 (614)
Q Consensus 95 ~~L~~L~l~~n~l~~~~~~~~~-l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~ 172 (614)
++|++|+++++.++. ..... +.. +++|++|++++|.+++......+..+..+++|++|++++|.+++..+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~--~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD--ARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCH--HHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCc--hhHHHHHhh-cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 457778888887763 22233 344 78888888888877631111222356777888888888888775444333 23
Q ss_pred CC----CCcEEEcccCCCCC----ccCCCCCCCCCCCCEEEcccCcCccccCc----ccccCCCCccEEEccCCcccccc
Q 042884 173 MT----SLRILDVSSNQLTG----SIASSPLAHLTSIEELHLSDNHFRIPISL----EPLFNHSRLKIFDAENNELNAEI 240 (614)
Q Consensus 173 l~----~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~ 240 (614)
++ +|++|++++|.+.+ .++. .+..+++|++|++++|.+...... ......++|+.|++++|.+....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 44 68888888887762 2333 367778888888888877522110 11223456777777777665432
Q ss_pred cccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHH----hcCCCccEEEccCCCCCCC
Q 042884 241 TESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLL----ENNTKLKTLFLVNDSLAGP 316 (614)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~~~~~L~~L~l~~n~i~~~ 316 (614)
.. .++..+..+++|++|++++|.+.+..+..+. ...++|++|++++|.++..
T Consensus 159 ~~------------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 159 CE------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HH------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HH------------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 11 1234455667888888888877643332221 2355777777777777653
Q ss_pred C----CCCCCCCCccCEEEccCCccccCCC----hhhhhcCCCccEEEccCCcCCCC----CccchhccccCcEEEccCC
Q 042884 317 F----RLPIHSHKRLRQLDVSNNNFQGHIP----LEIGDILPNLISFNISMNALDGS----IPSSFGNINLLKILDLSNN 384 (614)
Q Consensus 317 ~----~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n 384 (614)
. +..+..+++|++|++++|.+++... ...+..+++|++|++++|.++.. ++..+..+++|++|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1 2334456777777777777653211 22222356777777777777643 4555666777777777777
Q ss_pred ccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc----CCccccCCCcCCEEECcCCcCCCCCCcC
Q 042884 385 QLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH----IPPQIGNLTRIQTLNLSHNNLTGLIPST 460 (614)
Q Consensus 385 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 460 (614)
.+.+..+..+...+. ...++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 295 ~i~~~~~~~l~~~l~--------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 295 ELGDEGARLLCETLL--------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp CCHHHHHHHHHHHHT--------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred CCchHHHHHHHHHhc--------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 765332222211110 0113444444444444432 2334445566666666666555432222
Q ss_pred CC-----CCCCCCEEEccCCcCCC----CCcccccCCCCCCeEeccCCcCc
Q 042884 461 FS-----NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 461 ~~-----~l~~L~~L~ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~ 502 (614)
+. ..++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 22 14566666666666653 44555555666666666666655
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=263.39 Aligned_cols=266 Identities=23% Similarity=0.263 Sum_probs=181.0
Q ss_pred CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357 (614)
Q Consensus 278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L 357 (614)
...++.++..+. .+|..+ .++++.|++++|.+..+.+..|..+++|++|++++|.++ .++...+..+++|++|+|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 445666666665 555432 245666666666666666666666666666666666665 444444444666666666
Q ss_pred cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcCCCcCC
Q 042884 358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLSCNKLI 430 (614)
Q Consensus 358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~~n~l~ 430 (614)
++|+++...+..|..+++|++|++++|.+. .+|...|..+++|++|++++|+..+ ..+++|++|++++|+++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 666666555556666666666666666666 5555556666666666666643221 23566777777777776
Q ss_pred ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccc
Q 042884 431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKA 510 (614)
Q Consensus 431 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 510 (614)
. +| .+..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus 199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 3 33 377788888888888888888888888888888888888888888788888888888888888888877777777
Q ss_pred ccCCcCcccccCCcCCCCCCC------------------CCCCCCCCCCCCCCCCCCCC
Q 042884 511 QFATFNESSYEGNTFLCGLPL------------------PICRSPATTPEASIGNERDD 551 (614)
Q Consensus 511 ~~~~l~~~~~~~n~~~c~~~~------------------~~c~~~~~~~~~~~~~~~~~ 551 (614)
.+++++.+++++|||.|+|.. ..|..|....+......+..
T Consensus 277 ~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~ 335 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQN 335 (440)
T ss_dssp SCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----C
T ss_pred cccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhh
Confidence 788888888888888888853 14777776666655544433
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.8e-33 Score=294.90 Aligned_cols=119 Identities=22% Similarity=0.219 Sum_probs=60.8
Q ss_pred CCCCCCCCEEeCcCcccCCCcchhhHhhhcCC----CcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCcccccc
Q 042884 91 FPHFKSLEHLNMERARIAPNTSFLQIIGESTP----SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSL 166 (614)
Q Consensus 91 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~----~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~ 166 (614)
+..+++|++|++++|.+.. ..+..+...++ +|++|++++|.++.......+..+..+++|++|++++|.+++..
T Consensus 52 l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp HHTCTTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred HHhCCCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 4445666666666666542 22333333344 56666666666653111122235666666666666666665433
Q ss_pred Ccccc-----CCCCCcEEEcccCCCCCcc----CCCCCCCCCCCCEEEcccCcCc
Q 042884 167 PWCVA-----NMTSLRILDVSSNQLTGSI----ASSPLAHLTSIEELHLSDNHFR 212 (614)
Q Consensus 167 ~~~~~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~~~ 212 (614)
+..+. ..++|++|++++|++.+.. +. .+..+++|++|++++|.+.
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEECcCCCcc
Confidence 33222 2345666666666655211 11 1334555666666665554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.4e-29 Score=264.48 Aligned_cols=226 Identities=19% Similarity=0.209 Sum_probs=142.0
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
++++.|++++|.+.+..+.. |..+++|++|++++|.+.++.+..|.++++|++|++++|.++ .++...+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 57788888888887444443 677888888888888888777777888888888888888887 6666655567888888
Q ss_pred EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc----ccCCccEEEcCCCcCCc
Q 042884 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK----VLSLLSGLDLSCNKLIG 431 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~L~~L~L~~n~l~~ 431 (614)
+|++|.++...+..|..+++|++|++++|+..+.++...|.++++|++|++++|++++. .+++|++|+|++|++++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc
Confidence 88888887666677788888888888875444467776666777777666666665531 23344444444444444
Q ss_pred cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG 503 (614)
Q Consensus 432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 503 (614)
..|..|.++++|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++.|
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 444444444444444444444444444444444444444444444444444444444444444444444443
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3.5e-30 Score=256.72 Aligned_cols=208 Identities=30% Similarity=0.469 Sum_probs=134.2
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCC-
Q 042884 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILP- 350 (614)
Q Consensus 272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~- 350 (614)
+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..++. ++
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~ 174 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSK 174 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCT
T ss_pred HhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhh
Confidence 334444455555555444444443 445555555555555555544555555666666666666665556655555 44
Q ss_pred CccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCC
Q 042884 351 NLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLI 430 (614)
Q Consensus 351 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~ 430 (614)
+|++|++++|.+++..|..+..++ |++|++++|.+++..|. .+..+++ |+.|++++|+++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~------------------L~~L~L~~N~l~ 234 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKN------------------TQKIHLAKNSLA 234 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSC------------------CSEEECCSSEEC
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCC------------------CCEEECCCCcee
Confidence 666666666666666666666665 77777777766643333 3334444 444444444444
Q ss_pred ccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884 431 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG 503 (614)
Q Consensus 431 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 503 (614)
+.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 34443 667788999999999998888888888999999999999998888876 778889999999998443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.6e-28 Score=242.93 Aligned_cols=246 Identities=19% Similarity=0.254 Sum_probs=153.0
Q ss_pred cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccC--CChhhhhcCCCccEEE
Q 042884 279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH--IPLEIGDILPNLISFN 356 (614)
Q Consensus 279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~~l~~L~~L~ 356 (614)
+.++.+++.++ .+|..+ .+++++|++++|.++.+.+..|..+++|++|++++|.++.. .+..++. +++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence 34555555555 444321 24556666666666655555555666666666666655411 1333333 56666666
Q ss_pred ccCCcCCCCCccchhccccCcEEEccCCccCCcCCc-hhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcC
Q 042884 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPE-HLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKL 429 (614)
Q Consensus 357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l 429 (614)
+++|.+. .+|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+. .+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 6666655 23444556666666666666665 3332 4445566666666666655431 245666777777776
Q ss_pred Cc-cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcc
Q 042884 430 IG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508 (614)
Q Consensus 430 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 508 (614)
++ ..|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 65 45666777777777777777777776777777777777777777777666666777777777777777777776666
Q ss_pred cccc-CCcCcccccCCcCCCCCCC
Q 042884 509 KAQF-ATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 509 ~~~~-~~l~~~~~~~n~~~c~~~~ 531 (614)
+..+ ++++.+++++|++.|+|+.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGG
T ss_pred HHhhhccCCEEEccCCCeecccCh
Confidence 6666 3677777777777777653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5e-28 Score=245.92 Aligned_cols=217 Identities=19% Similarity=0.163 Sum_probs=151.4
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCC-CCCCCCCccCEEEccCCc-cccCCChhhhhcC
Q 042884 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNN-FQGHIPLEIGDIL 349 (614)
Q Consensus 272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l 349 (614)
+..+++|++|++++|.++ .+|...|..+++|++|++++|.+..+.. ..+..+++|++|++++|. +. .++...+..+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l 173 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGL 173 (353)
T ss_dssp TTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTC
T ss_pred cCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCC
Confidence 445667777777777776 4555556777777777777777776655 567777888888888874 54 4544444457
Q ss_pred CCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884 350 PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL 429 (614)
Q Consensus 350 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l 429 (614)
++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+++|+.|++++|.+++..+..+.
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------- 243 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------- 243 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccc---------
Confidence 88888888888888777888888888888888888886 77776666667777777766666542221111
Q ss_pred CccCCccccCCCcCCEEECcCCcCCC----CCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884 430 IGHIPPQIGNLTRIQTLNLSHNNLTG----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI 505 (614)
Q Consensus 430 ~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 505 (614)
.....+.++.++++++.+++ .+|..+..+++|++|++++|+++.+.+..|..+++|++|++++|++++.+
T Consensus 244 ------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 244 ------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp ---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 11234556777777776654 24566778888888899888888444444688889999999999998776
Q ss_pred C
Q 042884 506 P 506 (614)
Q Consensus 506 ~ 506 (614)
|
T Consensus 318 ~ 318 (353)
T 2z80_A 318 P 318 (353)
T ss_dssp H
T ss_pred C
Confidence 5
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.7e-30 Score=278.84 Aligned_cols=436 Identities=12% Similarity=0.016 Sum_probs=236.9
Q ss_pred ccccCCCCCCCEEECCCccc-CCCCCCCCc-ccC------------CCCCCCEEeCCCCCCCccchHHHhh-ccC-CcEE
Q 042884 11 LQSMGSLPSLNTLYLKHNNF-TGTATTTTQ-ELH------------NFTNLEYSTLSGSSLHISLLQSIAS-LFP-SLKN 74 (614)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~-~l~------------~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~-l~~l 74 (614)
+..+..+++|++|+++++.. ..... ++ .++ .+++|++|+|++|.+.+..+..+.. ++. |++|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNL--IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTC--SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhccc--ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 33556789999999988642 11100 11 222 6889999999999888777777766 344 8999
Q ss_pred eccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcc--hhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCC
Q 042884 75 LSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTS--FLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHL 152 (614)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L 152 (614)
.+.+|.............++++|++|++++|.+.+... ++..... +++|++|++++|.+++......+..+.++++|
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH-NTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH-CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc-CCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 98887632111100123467888888888887754100 3344444 88888888888877621111112245577888
Q ss_pred CeEECcCCccccccCccccCCCCCcEEEcccCCCC---CccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEE
Q 042884 153 QELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLT---GSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIF 229 (614)
Q Consensus 153 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 229 (614)
++|++++|.+.+ +|..+..+++|++|+++..... +..+. .+..+++|+.|+++++... .++ ..+..+++|+.|
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~-~l~-~~~~~~~~L~~L 298 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM-NLVFPRKLCRLGLSYMGPN-EMP-ILFPFAAQIRKL 298 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS-CCCCCTTCCEEEETTCCTT-TGG-GGGGGGGGCCEE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH-HhhccccccccCccccchh-HHH-HHHhhcCCCcEE
Confidence 888888888874 6677888888888888753322 11111 2556677777777665322 222 234455666666
Q ss_pred EccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEcc
Q 042884 230 DAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLV 309 (614)
Q Consensus 230 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 309 (614)
++++|.+.+.. ++..+..+++|++|+++ +.+.+.....++..+++|++|+++
T Consensus 299 ~Ls~~~l~~~~---------------------------~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 299 DLLYALLETED---------------------------HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EETTCCCCHHH---------------------------HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ecCCCcCCHHH---------------------------HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 66666543221 11223455666666666 333322222334455666666666
Q ss_pred C-----------CCCCCCCCCC-CCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc----CCcCCCC-----Ccc
Q 042884 310 N-----------DSLAGPFRLP-IHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS----MNALDGS-----IPS 368 (614)
Q Consensus 310 ~-----------n~i~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~----~n~l~~~-----~~~ 368 (614)
+ +.++...... ...+++|++|+++.|.+++..+..+...+++|+.|+++ .|.+++. ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 2 2222110000 12234444554444444433333333334445555543 3333321 122
Q ss_pred chhccccCcEEEccCCc--cCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCc-cCCccccCCCcCCE
Q 042884 369 SFGNINLLKILDLSNNQ--LTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQT 445 (614)
Q Consensus 369 ~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 445 (614)
.+.++++|++|+++.|. +++..+..+... +++|+.|++++|++++ ..+..+.++++|++
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY------------------SPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHS------------------CTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHh------------------CccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence 23344444444444322 332222222222 4556666666666654 23344566777888
Q ss_pred EECcCCcCCCC-CCcCCCCCCCCCEEEccCCcCCCCCcccc-cCCCCCCeEeccCC
Q 042884 446 LNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQL-VELKTLEVFSLAFN 499 (614)
Q Consensus 446 L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~~~l-~~l~~L~~L~l~~N 499 (614)
|++++|.+++. .+.....+++|++|++++|+++......+ ..++.+....+..+
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 88888876533 22334567778888888888765433323 24566655555444
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=249.40 Aligned_cols=229 Identities=21% Similarity=0.221 Sum_probs=184.5
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
++++.|++++|.+.+ ++...|..+++|++|++++|.+..+.+..|.++++|++|++++|.++ .++...+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence 467777777777773 33333677777777777777777777677777777777777777776 5665555557777788
Q ss_pred EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc----cccCCccEEEcCCCcCCc
Q 042884 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIG 431 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~L~~L~L~~n~l~~ 431 (614)
++++|.++...+..|..+++|++|++++|+..+.++...|.++++|++|++++|+++. ..+++|++|+|++|++++
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence 8877777766666777777888888877544446777777777778888888877765 236789999999999998
Q ss_pred cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
..|..|.++++|++|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 889999999999999999999999999999999999999999999998888889999999999999999997554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=245.44 Aligned_cols=252 Identities=19% Similarity=0.225 Sum_probs=207.8
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
++|++|++++|.+. .++...+..+++|++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence 48899999999988 455544788999999999999999888888889999999999999998 6777766668999999
Q ss_pred EccCCcCCCCCc-cchhccccCcEEEccCCc-cCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCC
Q 042884 356 NISMNALDGSIP-SSFGNINLLKILDLSNNQ-LTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCN 427 (614)
Q Consensus 356 ~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n 427 (614)
++++|++++..+ ..+..+++|++|++++|. +. .++...+.++++|++|++++|++++. .+++|++|++++|
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 999999886554 578889999999999985 55 66666678889999999999988763 3577899999999
Q ss_pred cCCccCCccccCCCcCCEEECcCCcCCCCCCcCCC---CCCCCCEEEccCCcCCC----CCcccccCCCCCCeEeccCCc
Q 042884 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS---NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSLAFNN 500 (614)
Q Consensus 428 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~ 500 (614)
++....+..+..+++|++|++++|.+++..+..+. ..+.++.++++++.+.+ .+|+.+..+++|+.|++++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 98755445566789999999999999987665443 46789999999999875 367788999999999999999
Q ss_pred CcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 501 LSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 501 l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
++...+..+..+++++.+++++|++.|+||
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 995444446889999999999999999986
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.1e-28 Score=239.36 Aligned_cols=249 Identities=22% Similarity=0.261 Sum_probs=165.6
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCC--CCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
++|++|++++|.+. .+|..+|..+++|++|++++|.+.... +..+..+++|++|++++|.+. .+|..+.. +++|+
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~-l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEET-CTTCC
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCC-CCCCC
Confidence 35556666666655 444444555566666666666555321 223344556666666666655 44444333 56666
Q ss_pred EEEccCCcCCCCCc-cchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc-------cccCCccEEEcC
Q 042884 354 SFNISMNALDGSIP-SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG-------KVLSLLSGLDLS 425 (614)
Q Consensus 354 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~L~~L~L~ 425 (614)
+|++++|.+++..+ ..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+++ ..+++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 66666666554433 45555666666666666655 3333334556666666666665543 235678888888
Q ss_pred CCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC-CCCeEeccCCcCccc
Q 042884 426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSLAFNNLSGE 504 (614)
Q Consensus 426 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~ 504 (614)
+|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++++.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8888888889999999999999999999998888899999999999999999999999999985 999999999999975
Q ss_pred CCc-cccc-cCCcCcccccCCcCCCC
Q 042884 505 IPE-WKAQ-FATFNESSYEGNTFLCG 528 (614)
Q Consensus 505 ~~~-~~~~-~~~l~~~~~~~n~~~c~ 528 (614)
.+. ++.. +...+.+....+...|.
T Consensus 264 c~~~~~~~~l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 264 CEHQSFLQWIKDQRQLLVEVERMECA 289 (306)
T ss_dssp GGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred cChHHHHHHHHhhhhhhccccccccC
Confidence 441 1222 23344445555655554
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-29 Score=275.60 Aligned_cols=376 Identities=13% Similarity=0.088 Sum_probs=227.5
Q ss_pred CCCCCCEEeCcCcccCCCcchhhHhhhcCCC-cCEEeccCCc-CCCCCCCcCchhhcCCCCCCeEECcCCccccc----c
Q 042884 93 HFKSLEHLNMERARIAPNTSFLQIIGESTPS-LKYLSLSDFT-LSTNSSRILDRGLCSLMHLQELYKVNNDLRGS----L 166 (614)
Q Consensus 93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~-L~~L~L~~n~-l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~----~ 166 (614)
.+++|++|+++++.+.. ..+..+...+++ |++|++++|. +.. .........+++|++|++++|.+++. +
T Consensus 110 ~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSD--LDLDRLAKARADDLETLKLDKCSGFTT---DGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESCBCCH--HHHHHHHHHHGGGCCEEEEESCEEEEH---HHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeeccEecH--HHHHHHHHhccccCcEEECcCCCCcCH---HHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 57788888888887764 445555543344 8888888775 211 11111234678888888888887655 2
Q ss_pred CccccCCCCCcEEEcccCCCCC----ccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccc
Q 042884 167 PWCVANMTSLRILDVSSNQLTG----SIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITE 242 (614)
Q Consensus 167 ~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 242 (614)
+..+..+++|++|++++|.+.+ .++. .+..+++|++|++++|.+.+ ++ ..+..+++|+.|+++........
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~-- 259 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGM-- 259 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTC--
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccch--
Confidence 3345567888888888887761 2221 24567888888888887763 33 45667778888887753211110
Q ss_pred cccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCC-CCC
Q 042884 243 SYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFR-LPI 321 (614)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~ 321 (614)
...+..+..+++|+.|+++++... .+|.. +..+++|++|++++|.+..... ..+
T Consensus 260 -----------------------~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 260 -----------------------PEKYMNLVFPRKLCRLGLSYMGPN-EMPIL-FPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp -----------------------TTSSSCCCCCTTCCEEEETTCCTT-TGGGG-GGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred -----------------------HHHHHHhhccccccccCccccchh-HHHHH-HhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 112223344556666666554322 33332 4555666666666665432211 113
Q ss_pred CCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC-----------CcCCCC-CccchhccccCcEEEccCCccCCc
Q 042884 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM-----------NALDGS-IPSSFGNINLLKILDLSNNQLTGE 389 (614)
Q Consensus 322 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 389 (614)
..+++|+.|+++ +.+.+.....+...+++|++|++++ +.+++. .+.....+++|++|+++.|.+++.
T Consensus 315 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 315 QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 455666666666 3333222223333466677777662 344422 122234466677777766666655
Q ss_pred CCchhhccCCCCCEEEcc----CCccccc-----------ccCCccEEEcCCCc--CCccCCcccc-CCCcCCEEECcCC
Q 042884 390 IPEHLAVGCVYLDFLALS----NNSLEGK-----------VLSLLSGLDLSCNK--LIGHIPPQIG-NLTRIQTLNLSHN 451 (614)
Q Consensus 390 ~~~~~~~~~~~L~~L~l~----~n~l~~~-----------~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n 451 (614)
.+..+...+++|+.|+++ .|.+++. .+++|+.|++++|. +++..+..+. .+++|++|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 555554446667777764 4455531 25677778776543 5544444443 4899999999999
Q ss_pred cCCCC-CCcCCCCCCCCCEEEccCCcCCCC-CcccccCCCCCCeEeccCCcCccc
Q 042884 452 NLTGL-IPSTFSNLKHIESLDLSYNKLNGK-IPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 452 ~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
++++. .+..+.++++|++|++++|.+++. ++.....+++|++|++++|+++..
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 98753 344567889999999999998644 344456789999999999998854
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.3e-27 Score=230.32 Aligned_cols=222 Identities=21% Similarity=0.239 Sum_probs=120.2
Q ss_pred cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884 279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358 (614)
Q Consensus 279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~ 358 (614)
+.++.+++.+. .+|.. ..+++++|++++|.+.++.+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCC
Confidence 44555555554 44432 23455555555555555555555555555555555555553223222 225555566665
Q ss_pred CCc-CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc------cccCCccEEEcCCCcCCc
Q 042884 359 MNA-LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG------KVLSLLSGLDLSCNKLIG 431 (614)
Q Consensus 359 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~L~~L~L~~n~l~~ 431 (614)
+|. +....+..|..+++|++|++++|.++ .++...+..+++|++|++++|++++ ..+++|++|++++|++++
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 554 54444555555556666666666555 3333333444444444444443332 113445555555555555
Q ss_pred cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 555556666666666666666666666666666666666666666665555556666666666666666664433
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-26 Score=241.72 Aligned_cols=242 Identities=21% Similarity=0.244 Sum_probs=185.0
Q ss_pred CCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcE
Q 042884 201 IEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEY 280 (614)
Q Consensus 201 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 280 (614)
...++.++..++ .+|.. + .++++.|++++|.+.+.. |..+..+++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~-~--~~~l~~L~L~~n~i~~~~----------------------------~~~~~~l~~L~~ 103 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQG-I--PSNTRYLNLMENNIQMIQ----------------------------ADTFRHLHHLEV 103 (452)
T ss_dssp SCEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEEC----------------------------TTTTTTCTTCCE
T ss_pred CcEEEECCCCcC-ccCCC-C--CCCccEEECcCCcCceEC----------------------------HHHcCCCCCCCE
Confidence 456777777665 44421 1 256778888887776543 344556778888
Q ss_pred EEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC-
Q 042884 281 VDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM- 359 (614)
Q Consensus 281 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~- 359 (614)
|++++|.+.+..+. .|.++++|++|++++|.++.+.+..|..+++|++|++++|.++ .++...+..+++|++|++++
T Consensus 104 L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 104 LQLGRNSIRQIEVG-AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp EECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCC
T ss_pred EECCCCccCCcChh-hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCC
Confidence 88888888743333 3777888888888888888777777778888888888888887 56665566678888888887
Q ss_pred CcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCcCCccC
Q 042884 360 NALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNKLIGHI 433 (614)
Q Consensus 360 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~l~~~~ 433 (614)
+.+....+..|.++++|++|++++|+++ .+|. +..+++|++|++++|++++. .+++|+.|++++|++++..
T Consensus 182 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp TTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred CCccccChhhccCCCCCCEEECCCCccc-cccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 4455445556778888888888888887 5554 45777888888888887653 3578899999999999899
Q ss_pred CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884 434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479 (614)
Q Consensus 434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 479 (614)
+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9999999999999999999999999999999999999999999864
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2e-26 Score=230.97 Aligned_cols=225 Identities=18% Similarity=0.211 Sum_probs=171.2
Q ss_pred CCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884 275 QHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354 (614)
Q Consensus 275 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~ 354 (614)
.++++.|++++|.+. .+|.. +..+++|++|++++|.+. ..+..+..+++|++|++++|.++ .+|..+.. +++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCE
T ss_pred ccceeEEEccCCCch-hcChh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCE
Confidence 468888999999888 77776 456888999999998888 45667888888999999999887 78877665 888999
Q ss_pred EEccCCcCCCCCccchhc---------cccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcC
Q 042884 355 FNISMNALDGSIPSSFGN---------INLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLS 425 (614)
Q Consensus 355 L~L~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~ 425 (614)
|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+ ..+++|++|++++|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N---------------- 216 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNS---------------- 216 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESS----------------
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCC----------------
Confidence 999888877777776654 888888888888887 777764 45555555555554
Q ss_pred CCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884 426 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI 505 (614)
Q Consensus 426 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 505 (614)
+++ .+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+
T Consensus 217 --~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 217 --PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp --CCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred --CCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 444 24445777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CccccccCCcCcccccCCcC
Q 042884 506 PEWKAQFATFNESSYEGNTF 525 (614)
Q Consensus 506 ~~~~~~~~~l~~~~~~~n~~ 525 (614)
|..+..+++++.+.+..+..
T Consensus 294 P~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGS
T ss_pred cHHHhhccCceEEeCCHHHH
Confidence 77777777777776665543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.3e-26 Score=228.15 Aligned_cols=231 Identities=22% Similarity=0.232 Sum_probs=178.9
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCc-cccCCChhhhhcCCCccE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN-FQGHIPLEIGDILPNLIS 354 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~ 354 (614)
++|++|++++|.+. .++...|..+++|++|++++|.+.++.+..|..+++|++|++++|. +. .++...+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCE
Confidence 57788888888877 3444446777888888888888877777777788888888888886 65 554444444788888
Q ss_pred EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc------ccCCccEEEcCCCc
Q 042884 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK------VLSLLSGLDLSCNK 428 (614)
Q Consensus 355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~L~~L~L~~n~ 428 (614)
|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++. .+++|++|++++|+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 888888888777777888888888888888887 66666667788888888888877652 35789999999999
Q ss_pred CCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcc
Q 042884 429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508 (614)
Q Consensus 429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 508 (614)
+++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++....+.. .....++.+..+.+.+.+..|..
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 99888999999999999999999999888888999999999999999998543321 11234556667888888888875
Q ss_pred cc
Q 042884 509 KA 510 (614)
Q Consensus 509 ~~ 510 (614)
+.
T Consensus 268 l~ 269 (285)
T 1ozn_A 268 LA 269 (285)
T ss_dssp GT
T ss_pred hC
Confidence 43
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1e-25 Score=242.70 Aligned_cols=188 Identities=25% Similarity=0.242 Sum_probs=113.6
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
++|+.|++++|+++ .+|. .+++|++|++++|.+.+++. .+++|+.|++++|.++ .+| ..+++|+.|
T Consensus 121 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L 186 (622)
T 3g06_A 121 SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLT-SLP----MLPSGLQEL 186 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEE
T ss_pred CCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEE
Confidence 34555555555554 3332 12555555555555554322 2345666666666665 454 225566666
Q ss_pred EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCc
Q 042884 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP 435 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~ 435 (614)
++++|.+++. |. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|
T Consensus 187 ~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~~----------------------~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 187 SVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL----------------------PSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp ECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCCC----------------------CTTCCEEECCSSCCSC-CC-
T ss_pred ECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCCC----------------------CCCCCEEEccCCccCc-CC-
Confidence 6666666642 22 1356666777777665 44431 2445555555665553 33
Q ss_pred cccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccC
Q 042884 436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA 513 (614)
Q Consensus 436 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 513 (614)
..+++|+.|++++|+++.+. . .+++|+.|++++|+|+ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 238 --~~l~~L~~L~Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred --CCCCcCcEEECCCCCCCcCC-c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 34577888888888887543 3 4677888888888888 6677788888888888888888877666554443
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1e-25 Score=225.72 Aligned_cols=212 Identities=23% Similarity=0.330 Sum_probs=180.2
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhh
Q 042884 267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIG 346 (614)
Q Consensus 267 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 346 (614)
.+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+.+|..+.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 34556667889999999999988 77876 6788999999999999884 456688889999999999887778887653
Q ss_pred --------hcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCC
Q 042884 347 --------DILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSL 418 (614)
Q Consensus 347 --------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 418 (614)
..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ .. +++
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~------------------l~~ 230 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HH------------------LPK 230 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GG------------------CTT
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-cc------------------CCC
Confidence 24899999999999999 77888999999999999999998 677654 34 445
Q ss_pred ccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccC
Q 042884 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF 498 (614)
Q Consensus 419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~ 498 (614)
|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.+++..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 56666666677778888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCc
Q 042884 499 NNLS 502 (614)
Q Consensus 499 N~l~ 502 (614)
+.+.
T Consensus 311 ~~~~ 314 (328)
T 4fcg_A 311 HLQA 314 (328)
T ss_dssp GGSC
T ss_pred HHHH
Confidence 8765
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=237.90 Aligned_cols=237 Identities=23% Similarity=0.229 Sum_probs=163.4
Q ss_pred CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
.+++|++|++++|.+.+. +...|..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++ ..++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCC
T ss_pred cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcC
Confidence 445667777777776633 33336666777777777776665443 666667777777777665 333 136677
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc-------ccCCccEEEcCC
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK-------VLSLLSGLDLSC 426 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~L~~L~L~~ 426 (614)
+|++++|.+++..+.. +++|++|++++|+++ .++...+..+++|++|++++|.+++. .+++|++|++++
T Consensus 103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp EEECCSSCCSEEEECC---CSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECCCCccCCcCccc---cCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 7777777766544332 456677777777766 44444445666677777777766541 246777788888
Q ss_pred CcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc-ccC
Q 042884 427 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS-GEI 505 (614)
Q Consensus 427 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~ 505 (614)
|.+++.. ....+++|++|++++|++++..+. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+
T Consensus 179 N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 179 NFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence 8777552 233578999999999999876554 888899999999999998 56777888899999999999998 566
Q ss_pred CccccccCCcCcccccCCcCCC
Q 042884 506 PEWKAQFATFNESSYEGNTFLC 527 (614)
Q Consensus 506 ~~~~~~~~~l~~~~~~~n~~~c 527 (614)
|.++..++.++.+++.+++...
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccceEEECCCchhcc
Confidence 7777888888888877554333
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.3e-25 Score=236.57 Aligned_cols=269 Identities=27% Similarity=0.304 Sum_probs=190.7
Q ss_pred CCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCC
Q 042884 122 PSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSI 201 (614)
Q Consensus 122 ~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 201 (614)
.+++.|++++|.++ .+|. .+. ++|++|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|
T Consensus 40 ~~l~~L~ls~n~L~----~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESGLT----TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGL 103 (622)
T ss_dssp HCCCEEECCSSCCS----CCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTC
T ss_pred CCCcEEEecCCCcC----ccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCC
Confidence 35777788777776 5555 333 67788888888777 3444 4677888888888777 5664 56778
Q ss_pred CEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEE
Q 042884 202 EELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYV 281 (614)
Q Consensus 202 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 281 (614)
++|++++|.++ .++. .+++|+.|++++|.+... |. .+++|++|
T Consensus 104 ~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~l-----------------------------p~---~l~~L~~L 146 (622)
T 3g06_A 104 LELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSL-----------------------------PV---LPPGLQEL 146 (622)
T ss_dssp CEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCC-----------------------------CC---CCTTCCEE
T ss_pred CEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcC-----------------------------CC---CCCCCCEE
Confidence 88888888776 3332 456777777777766532 11 13678888
Q ss_pred EccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc
Q 042884 282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361 (614)
Q Consensus 282 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 361 (614)
++++|.+. .+|. .+++|+.|++++|.++.++ ..+++|+.|++++|.++ .+|.. +++|+.|++++|.
T Consensus 147 ~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~ 212 (622)
T 3g06_A 147 SVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR 212 (622)
T ss_dssp ECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSC
T ss_pred ECcCCcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCc
Confidence 88888887 4553 3567888888888888754 34678888999998887 56542 5788999999998
Q ss_pred CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCC
Q 042884 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 441 (614)
Q Consensus 362 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 441 (614)
++. +|. .+++|+.|++++|.++ .+|. . +++|+.|++++|+++. +|. .++
T Consensus 213 l~~-l~~---~~~~L~~L~Ls~N~L~-~lp~----~------------------l~~L~~L~Ls~N~L~~-lp~---~~~ 261 (622)
T 3g06_A 213 LTS-LPA---LPSGLKELIVSGNRLT-SLPV----L------------------PSELKELMVSGNRLTS-LPM---LPS 261 (622)
T ss_dssp CSS-CCC---CCTTCCEEECCSSCCS-CCCC----C------------------CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred ccc-cCC---CCCCCCEEEccCCccC-cCCC----C------------------CCcCcEEECCCCCCCc-CCc---ccc
Confidence 884 333 2478999999999988 5662 2 3445555666666663 333 567
Q ss_pred cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC
Q 042884 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489 (614)
Q Consensus 442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~ 489 (614)
+|+.|+|++|+++ .+|..+.++++|+.|++++|++++..|..+..++
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8888999999888 4577788888999999999998887777666543
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.3e-25 Score=215.21 Aligned_cols=207 Identities=21% Similarity=0.236 Sum_probs=146.9
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEE
Q 042884 301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILD 380 (614)
Q Consensus 301 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 380 (614)
...+.++++++.++.++.. + .++++.|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 3466777777777764332 2 246777777777776 55554444577777777777777766666667777777777
Q ss_pred ccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcC
Q 042884 381 LSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST 460 (614)
Q Consensus 381 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 460 (614)
+++|.++ .+|...|..+++ |++|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus 92 l~~n~l~-~~~~~~~~~l~~------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 92 VTDNKLQ-ALPIGVFDQLVN------------------LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp CCSSCCC-CCCTTTTTTCSS------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcCC-cCCHhHcccccC------------------CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 7777776 556555555544 455555555566566667777888888888888888777777
Q ss_pred CCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 461 ~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++|||.|+|+
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7888888888888888887666677778888888888888876666667777788888888888888775
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.4e-27 Score=234.36 Aligned_cols=239 Identities=26% Similarity=0.305 Sum_probs=135.3
Q ss_pred cceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCC-CCCChhHH------hcCCCccEEEccCCCCCCCCCCCC--C
Q 042884 252 QLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMN-GEFPNWLL------ENNTKLKTLFLVNDSLAGPFRLPI--H 322 (614)
Q Consensus 252 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~------~~~~~L~~L~l~~n~i~~~~~~~~--~ 322 (614)
+|+.+++ .++.. .+|..+... |+.|++++|.+. ..+|.... ..+++|++|++++|.+.+..+..+ .
T Consensus 44 ~L~~l~l-~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLK-RVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHH-HCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEee-ccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 5666666 33333 555544433 677777777763 33454321 146777777777777776555554 6
Q ss_pred CCCccCEEEccCCccccCCChhhhhcC-----CCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcC--Cch-h
Q 042884 323 SHKRLRQLDVSNNNFQGHIPLEIGDIL-----PNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEI--PEH-L 394 (614)
Q Consensus 323 ~l~~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~ 394 (614)
.+++|++|++++|.+++. |..+.. + ++|++|++++|++++..+..|+.+++|++|++++|++.+.+ |.. .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 677777777777777643 544443 3 67777777777777666677777777777777777765432 222 2
Q ss_pred hccCCCCCEEEccCCcccc---------cccCCccEEEcCCCcCCccCC-ccccCCCcCCEEECcCCcCCCCCCcCCCCC
Q 042884 395 AVGCVYLDFLALSNNSLEG---------KVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 464 (614)
Q Consensus 395 ~~~~~~L~~L~l~~n~l~~---------~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 464 (614)
+..+++|++|++++|++++ ..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 3456666666666666552 112455555555555554432 23344455555555555555 2333332
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc
Q 042884 465 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 465 ~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 502 (614)
++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4555555555555533 33 455555555555555554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-26 Score=229.70 Aligned_cols=245 Identities=21% Similarity=0.245 Sum_probs=202.0
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCC-CCCCCC-------CCCccCEEEccCCccccCCC
Q 042884 271 FLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGP-FRLPIH-------SHKRLRQLDVSNNNFQGHIP 342 (614)
Q Consensus 271 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~-------~l~~L~~L~l~~n~i~~~~~ 342 (614)
.+...++|+.|++++|.+ .+|..+... |+.|++++|.+... .+..+. .+++|++|++++|.+++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345667899999999999 778765443 88899999988542 222222 58899999999999998888
Q ss_pred hhhh-hcCCCccEEEccCCcCCCCCccchhcc-----ccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc---
Q 042884 343 LEIG-DILPNLISFNISMNALDGSIPSSFGNI-----NLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG--- 413 (614)
Q Consensus 343 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--- 413 (614)
..++ ..+++|++|++++|++++. |..+..+ ++|++|++++|++. .++...+..+++|++|++++|++.+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchH
Confidence 8763 5589999999999999977 8888887 89999999999998 6665566899999999999999754
Q ss_pred -------cccCCccEEEcCCCcCCc---cCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCc
Q 042884 414 -------KVLSLLSGLDLSCNKLIG---HIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP 482 (614)
Q Consensus 414 -------~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~ 482 (614)
..+++|++|++++|++++ .....+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 346889999999999983 222445688999999999999998775 56777899999999999999 677
Q ss_pred ccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCC
Q 042884 483 HQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLC 527 (614)
Q Consensus 483 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c 527 (614)
..+. ++|++|++++|++++. |. +..+++++.+++++|++..
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7665 8899999999999976 66 7889999999999998753
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=5.7e-25 Score=216.15 Aligned_cols=208 Identities=25% Similarity=0.237 Sum_probs=151.1
Q ss_pred HhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccC
Q 042884 297 LENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLL 376 (614)
Q Consensus 297 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 376 (614)
++.++++++++++++.++.++... .++++.|++++|.++ .++...+..+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 345566677777776666544322 246666777777666 33333333466667777766666643322 556666
Q ss_pred cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 456 (614)
Q Consensus 377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 456 (614)
++|++++|+++ .+|..+ .. +++|++|++++|++++..+..|.++++|++|++++|++++.
T Consensus 80 ~~L~Ls~N~l~-~l~~~~-~~------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLG-QT------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp CEEECCSSCCS-SCCCCT-TT------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred CEEECCCCcCC-cCchhh-cc------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 66666666665 555432 22 45667777777777777778899999999999999999988
Q ss_pred CCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 457 ~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
.+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+.....++.+++.+|||.|+|..
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 8888899999999999999999777777888999999999999998 5666677777899999999999998864
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.4e-26 Score=240.88 Aligned_cols=228 Identities=22% Similarity=0.224 Sum_probs=148.9
Q ss_pred CccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhc
Q 042884 269 PKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDI 348 (614)
Q Consensus 269 p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~ 348 (614)
|..+..+++|++|++++|.+.+..| +..+++|++|++++|.+.++.+ .++|+.|++++|.+++ ++.. .
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~-~~~~---~ 118 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR-VSCS---R 118 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCC-EEEC---C
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCC-CCcc---c
Confidence 3445555666666666666654333 4556666666666666554332 2556666666666652 2221 2
Q ss_pred CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCc
Q 042884 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK 428 (614)
Q Consensus 349 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~ 428 (614)
+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+...+ ++|+.|+|++|.
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l------------------~~L~~L~Ls~N~ 180 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------------------DTLEHLNLQYNF 180 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT------------------TTCCEEECTTSC
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC------------------CcccEEecCCCc
Confidence 45566666666666655555566666666666666666544444443333 455555566666
Q ss_pred CCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCc-ccCCc
Q 042884 429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLS-GEIPE 507 (614)
Q Consensus 429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~ 507 (614)
+++..+ +..+++|+.|+|++|.+++.+|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 654422 33578899999999999876554 8888999999999999984 6777888899999999999998 55666
Q ss_pred cccccCCcCccccc-------CCcCCCCCC
Q 042884 508 WKAQFATFNESSYE-------GNTFLCGLP 530 (614)
Q Consensus 508 ~~~~~~~l~~~~~~-------~n~~~c~~~ 530 (614)
++..++.++.+++. ++++.|.|+
T Consensus 257 ~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HHHhCCCCcEEeccccccccCCCcccccCC
Confidence 67777777777765 788888765
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=231.31 Aligned_cols=261 Identities=19% Similarity=0.163 Sum_probs=180.5
Q ss_pred CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCC
Q 042884 96 SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTS 175 (614)
Q Consensus 96 ~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 175 (614)
.++..+++.+.+. ..+..+...+++|++|++++|.++ .+++..|..+++|++|++++|.+++..+ +..+++
T Consensus 11 ~l~i~~ls~~~l~---~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~ 81 (317)
T 3o53_A 11 RYKIEKVTDSSLK---QALASLRQSAWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81 (317)
T ss_dssp EEEEESCCTTTHH---HHHHHHHTTGGGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTT
T ss_pred ceeEeeccccchh---hhHHHHhccCCCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCC
Confidence 3455566666554 444455544677888888888777 4555577788888888888888775443 777788
Q ss_pred CcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCcccee
Q 042884 176 LRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQY 255 (614)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 255 (614)
|++|++++|.++ .++ ..++|++|++++|.+.+..+ ..+++|+.|++++|.+.+..
T Consensus 82 L~~L~Ls~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~--------------- 136 (317)
T 3o53_A 82 LRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLR--------------- 136 (317)
T ss_dssp CCEEECCSSEEE-EEE-----ECTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGG---------------
T ss_pred CCEEECcCCccc-ccc-----CCCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCcc---------------
Confidence 888888888776 333 23677788888877763221 23566777777777665432
Q ss_pred eeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCC
Q 042884 256 LLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN 335 (614)
Q Consensus 256 L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 335 (614)
+..+..+++|++|++++|.+.+..+..++..+++|++|++++|.++++.. ...+++|++|++++|
T Consensus 137 -------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 137 -------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSN 201 (317)
T ss_dssp -------------GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSS
T ss_pred -------------chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCC
Confidence 23445677888888888888865566545678888888888888887633 234788888888888
Q ss_pred ccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC
Q 042884 336 NFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408 (614)
Q Consensus 336 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 408 (614)
.++ .+|..+.. +++|++|++++|+++ .+|..+..+++|+.|++++|.+....+...+..++.|+.+++++
T Consensus 202 ~l~-~l~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 202 KLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCC-EECGGGGG-GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCC-cchhhhcc-cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 887 56655444 788888888888888 45667788888888888888887333334445666666666663
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.9e-25 Score=217.36 Aligned_cols=209 Identities=22% Similarity=0.240 Sum_probs=125.0
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
++|++|++++|.+.+ ++...|..+++|++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence 356666666666663 33323566666666666666666665556666666666666666665 3333333336666666
Q ss_pred EccCCcCCCCCccchhccccCcEEEccCCccCCc-CCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGE-IPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP 434 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~ 434 (614)
++++|.+.+..+..+..+++|++|++++|.+++. +|..+ .. +++|++|++++|++++..+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-~~------------------l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SN------------------LTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-GG------------------CTTCCEEECCSSCCCEECG
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-cc------------------CCCCCEEECCCCCCCcCCH
Confidence 6666666655555566666666666666666521 23332 23 3344444445555554555
Q ss_pred ccccCCCcCC----EEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 435 PQIGNLTRIQ----TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 435 ~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
..+..+++|+ +|++++|.+++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++++.+|
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 5565555555 6777777777665555543 367777777777776655566667777777777777776554
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.3e-27 Score=258.91 Aligned_cols=375 Identities=18% Similarity=0.153 Sum_probs=174.3
Q ss_pred CCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCC-cCCCCCCCcCchhhcCCCCCCeEECcCCccccccCcccc
Q 042884 93 HFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDF-TLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVA 171 (614)
Q Consensus 93 ~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n-~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 171 (614)
.+++|++|+++++.++. ..+..+...+++|++|++++| .++. ...+..+.++++|++|++++|.+++..+.++.
T Consensus 103 ~~~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFST---DGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HCTTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEEEH---HHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred hCCCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCCCH---HHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 46677777777777664 445555533778888888777 3331 11221334677788888887777655444443
Q ss_pred ----CCCCCcEEEcccCCCCCccCCC----CCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcc-------
Q 042884 172 ----NMTSLRILDVSSNQLTGSIASS----PLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNEL------- 236 (614)
Q Consensus 172 ----~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~------- 236 (614)
.+++|++|++++|. . .+... .+..+++|++|++++|.....++ ..+..+++|+.|+++.+..
T Consensus 178 ~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhH
Confidence 55678888887775 1 22211 12345777888877773221222 3455667777777654431
Q ss_pred cccccccccCCCCCccceee-eccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCC
Q 042884 237 NAEITESYSLTTPNFQLQYL-LLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAG 315 (614)
Q Consensus 237 ~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~ 315 (614)
.+... .+ ....+|+.+ .+ .......++..+..+++|++|++++|.+.+.....++..+++|++|++++| +..
T Consensus 255 ~~l~~-~l---~~~~~L~~Ls~~--~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~ 327 (594)
T 2p1m_B 255 SGLSV-AL---SGCKELRCLSGF--WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED 327 (594)
T ss_dssp HHHHH-HH---HTCTTCCEEECC--BTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred HHHHH-HH---hcCCCcccccCC--cccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence 11000 00 111233333 11 011112233333345556666666555443222222345555555555554 221
Q ss_pred CCCC-CCCCCCccCEEEccC---------CccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-ccccCcEEEcc--
Q 042884 316 PFRL-PIHSHKRLRQLDVSN---------NNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-NINLLKILDLS-- 382 (614)
Q Consensus 316 ~~~~-~~~~l~~L~~L~l~~---------n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~-- 382 (614)
.... ....+++|++|++++ +.+++.....+...+++|+.|.+..|.+++.....+. .+++|+.|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 0000 011244555555522 2222111112222245555555555554433333332 34555555555
Q ss_pred C----CccCCcCCc-----hhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccC-CCcCCEEECcCCc
Q 042884 383 N----NQLTGEIPE-----HLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGN-LTRIQTLNLSHNN 452 (614)
Q Consensus 383 ~----n~l~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~ 452 (614)
+ +.++ ..|. .++..++ +|+.|++++ .+++..+..+.. +++|++|++++|.
T Consensus 408 ~~~~~~~l~-~~~~~~~~~~l~~~~~------------------~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 408 EPKAPDYLT-LEPLDIGFGAIVEHCK------------------DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp STTCCCTTT-CCCTHHHHHHHHHHCT------------------TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred cCCCccccc-CCchhhHHHHHHhhCC------------------CccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 2 2232 1111 1123344 455555544 333332233332 4555556665555
Q ss_pred CCCCCCcCC-CCCCCCCEEEccCCcCCCCCcc-cccCCCCCCeEeccCCcCc
Q 042884 453 LTGLIPSTF-SNLKHIESLDLSYNKLNGKIPH-QLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 453 l~~~~~~~~-~~l~~L~~L~ls~N~l~~~~~~-~l~~l~~L~~L~l~~N~l~ 502 (614)
+++.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 543322222 3455566666666655432222 2233555666666666553
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.5e-24 Score=207.36 Aligned_cols=207 Identities=25% Similarity=0.294 Sum_probs=179.5
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
...+.++++++.++ .+|..+ .+++++|++++|.+..+.+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence 35789999999998 677642 368999999999999988889999999999999999998 7888877779999999
Q ss_pred EccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCc
Q 042884 356 NISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP 435 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~ 435 (614)
++++|.+++..+..|..+++|++|++++|.++ .++...|..+++| ++|++++|++++..+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L------------------~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKL------------------TYLSLGYNELQSLPKG 151 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTC------------------CEEECCSSCCCCCCTT
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCC------------------CEEECCCCcCCccCHh
Confidence 99999999888888999999999999999998 6666665555554 4555555566656667
Q ss_pred cccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 436 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 436 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
.|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 78999999999999999999888889999999999999999998777789999999999999999997665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.5e-24 Score=209.66 Aligned_cols=227 Identities=21% Similarity=0.239 Sum_probs=186.4
Q ss_pred EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccC
Q 042884 280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM 359 (614)
Q Consensus 280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~ 359 (614)
.++..+..+. .+|..+ .+++++|++++|.++++.+..|..+++|++|++++|.++ .++...+..+++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3455555555 566542 357999999999999988888999999999999999998 55555555699999999999
Q ss_pred CcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc-CCcccc
Q 042884 360 NALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH-IPPQIG 438 (614)
Q Consensus 360 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~-~~~~~~ 438 (614)
|.+++..+..|.++++|++|++++|.+. .++...+..+++ |++|++++|++++. +|..|.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~------------------L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT------------------LKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTT------------------CCEEECCSSCCCCCCCCGGGG
T ss_pred CccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCC------------------CCEEECcCCccceecCchhhc
Confidence 9999888899999999999999999998 555544445444 45555555555543 578899
Q ss_pred CCCcCCEEECcCCcCCCCCCcCCCCCCCCC----EEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCC
Q 042884 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIE----SLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT 514 (614)
Q Consensus 439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 514 (614)
.+++|++|++++|++++..+..+..+++|+ .|++++|.+.+..+..+.. .+|+.|++++|++++..+..+..+++
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccc
Confidence 999999999999999988888888777777 9999999999766665544 58999999999999877777788999
Q ss_pred cCcccccCCcCCCCCCC
Q 042884 515 FNESSYEGNTFLCGLPL 531 (614)
Q Consensus 515 l~~~~~~~n~~~c~~~~ 531 (614)
++.+++++||+.|+|+.
T Consensus 226 L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 226 LQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEEECCSSCBCCCTTT
T ss_pred ccEEEccCCcccccCCc
Confidence 99999999999999973
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3e-25 Score=234.50 Aligned_cols=170 Identities=19% Similarity=0.247 Sum_probs=99.1
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISF 355 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L 355 (614)
++|+.|++++|.+.+..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 99 ~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------------------ 156 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI------------------ 156 (487)
T ss_dssp TTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC------------------
T ss_pred CCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC------------------
Confidence 355555555555553222 1234445555555554444444444444444444444444
Q ss_pred EccCCcCCCCCccchh-ccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884 356 NISMNALDGSIPSSFG-NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP 434 (614)
Q Consensus 356 ~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~ 434 (614)
++..|..+. .+++|++|++++|.++ .+|... . +++|+.|+|++|.+++..|
T Consensus 157 -------~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~--~------------------l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 157 -------DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--V------------------FAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp -------CEEEGGGGGGGTTTCCEEECTTSCCC-EEECCC--C------------------CTTCCEEECCSSCCCEECG
T ss_pred -------CCcChHHHhhhCCcccEEecCCCccc-cccccc--c------------------CCCCCEEECCCCCCCCCCH
Confidence 444444433 4455555555555554 222211 1 3344444555555554433
Q ss_pred ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC-CCCcccccCCCCCCeEecc
Q 042884 435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN-GKIPHQLVELKTLEVFSLA 497 (614)
Q Consensus 435 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~~~~l~~l~~L~~L~l~ 497 (614)
.+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 37778888888888888886 4566888889999999999887 5667778888888888886
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.8e-28 Score=261.85 Aligned_cols=427 Identities=14% Similarity=0.092 Sum_probs=248.7
Q ss_pred ccCCCCCCCEEECCCccc-CCCCCC--CC--------c-ccCCCCCCCEEeCCCCCCCccchHHHh-hccCCcEEeccCc
Q 042884 13 SMGSLPSLNTLYLKHNNF-TGTATT--TT--------Q-ELHNFTNLEYSTLSGSSLHISLLQSIA-SLFPSLKNLSMSY 79 (614)
Q Consensus 13 ~~~~l~~L~~L~Ls~n~i-~~~~~~--~~--------~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~l~~l~l~~~ 79 (614)
.+.++++|++|+++++.. ...... .+ + ....+++|++|++++|.+.+..+..+. .+++|++|.+.+|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 456778899999988752 211100 00 1 123567888888888887776666665 5778888888777
Q ss_pred cccCC--ccCCCCCCCCCCCCEEeCcCcccCCCcchhhHh---hhcCCCcCEEeccCCcCCCCCCCcCchh----hcCCC
Q 042884 80 CEVNG--VVRGQGFPHFKSLEHLNMERARIAPNTSFLQII---GESTPSLKYLSLSDFTLSTNSSRILDRG----LCSLM 150 (614)
Q Consensus 80 ~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l---~~~l~~L~~L~L~~n~l~~~~~~i~~~~----~~~l~ 150 (614)
...+. ++ ..+.++++|++|++++|.+++ ..+..+ ...+++|++|++++|. . .+.... +..++
T Consensus 141 ~~~~~~~l~--~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~~~~L~~L~l~~~~-~----~~~~~~l~~l~~~~~ 211 (594)
T 2p1m_B 141 EGFSTDGLA--AIAATCRNLKELDLRESDVDD--VSGHWLSHFPDTYTSLVSLNISCLA-S----EVSFSALERLVTRCP 211 (594)
T ss_dssp EEEEHHHHH--HHHHHCTTCCEEECTTCEEEC--CCGGGGGGSCTTCCCCCEEECTTCC-S----CCCHHHHHHHHHHCT
T ss_pred CCCCHHHHH--HHHHhCCCCCEEeCcCCccCC--cchHHHHHHhhcCCcCcEEEecccC-C----cCCHHHHHHHHHhCC
Confidence 43322 22 123457777777777777553 112212 2226677777777765 1 122212 23457
Q ss_pred CCCeEECcCC-ccccccCccccCCCCCcEEEcccCC-------CCCccCCCCCCCCCCCCEE-EcccCcCccccCccccc
Q 042884 151 HLQELYKVNN-DLRGSLPWCVANMTSLRILDVSSNQ-------LTGSIASSPLAHLTSIEEL-HLSDNHFRIPISLEPLF 221 (614)
Q Consensus 151 ~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~ 221 (614)
+|++|++++| .+. .++..+..+++|++|+++.+. +. .++. .+.++++|+.| .+.+.... .++ ..+.
T Consensus 212 ~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~~-~l~-~~~~ 286 (594)
T 2p1m_B 212 NLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVPA-YLP-AVYS 286 (594)
T ss_dssp TCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCGG-GGG-GGHH
T ss_pred CCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccchh-hHH-HHHH
Confidence 7777777776 333 356666677777777755443 11 1222 24566666666 33322211 111 1122
Q ss_pred CCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCC
Q 042884 222 NHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNT 301 (614)
Q Consensus 222 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 301 (614)
.+++|+.|++++|.+... .++..+..+++|++|++++| +.+.....+...++
T Consensus 287 ~~~~L~~L~L~~~~l~~~---------------------------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSY---------------------------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTTCCEEECTTCCCCHH---------------------------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred hhCCCCEEEccCCCCCHH---------------------------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 456666666666654321 12233557899999999988 44232333355789
Q ss_pred CccEEEccC---------CCCCCCCCCCC-CCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc--C----CcCCCC
Q 042884 302 KLKTLFLVN---------DSLAGPFRLPI-HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS--M----NALDGS 365 (614)
Q Consensus 302 ~L~~L~l~~---------n~i~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~--~----n~l~~~ 365 (614)
+|++|++.+ +.++......+ .++++|+.|++..|.+++.....+...+++|+.|+++ + +.++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 999999954 33332111112 2478999999999998765555555568999999999 4 555532
Q ss_pred -----CccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccc-cC
Q 042884 366 -----IPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI-GN 439 (614)
Q Consensus 366 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~-~~ 439 (614)
++..+..+++|+.|++++ .+++..+..+...+++|+.|++++|.+++ .....+ .+
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~------------------~~~~~l~~~ 479 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD------------------LGMHHVLSG 479 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH------------------HHHHHHHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH------------------HHHHHHHhc
Confidence 222367789999999988 66645455554446666666666655433 222222 45
Q ss_pred CCcCCEEECcCCcCCCCCCc-CCCCCCCCCEEEccCCcCCCCCcccc-cCCCCCCeEeccCCc
Q 042884 440 LTRIQTLNLSHNNLTGLIPS-TFSNLKHIESLDLSYNKLNGKIPHQL-VELKTLEVFSLAFNN 500 (614)
Q Consensus 440 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~~~~l-~~l~~L~~L~l~~N~ 500 (614)
+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 66777777777776433222 33446777777777777643222223 345666655555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.4e-23 Score=204.49 Aligned_cols=206 Identities=24% Similarity=0.273 Sum_probs=175.4
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCC
Q 042884 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN 351 (614)
Q Consensus 272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~ 351 (614)
+..+++++.++++++.++ .+|..+ .+.++.|++++|.+.++.+..|..+++|+.|++++|.++ .++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 457889999999999998 677653 368999999999999988888999999999999999998 45443 45899
Q ss_pred ccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCc
Q 042884 352 LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG 431 (614)
Q Consensus 352 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~ 431 (614)
|++|++++|.++ .+|..+..+++|++|++++|+++ .+|...|.++++| ++|+|++|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L------------------~~L~L~~N~l~~ 138 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL------------------QELYLKGNELKT 138 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTC------------------CEEECTTSCCCC
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCC------------------CEEECCCCCCCc
Confidence 999999999998 56778899999999999999998 6776666555555 455555566666
Q ss_pred cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccC
Q 042884 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEI 505 (614)
Q Consensus 432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 505 (614)
..+..|..+++|+.|+|++|+++++.+..|..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.|.+
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 77778899999999999999999888888999999999999999999 67788888899999999999998654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5e-23 Score=200.73 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=141.1
Q ss_pred cCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCc
Q 042884 273 YHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNL 352 (614)
Q Consensus 273 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L 352 (614)
..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.++ .++...+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence 34567777777777766 3443 56677777777777777663 25666677777777777776 4444444446777
Q ss_pred cEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc
Q 042884 353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH 432 (614)
Q Consensus 353 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~ 432 (614)
++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+ ++|+.|++++|++++.
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l------------------~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKL------------------TNLTELDLSYNQLQSL 172 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC------------------TTCCEEECCSSCCCCC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccC------------------ccCCEEECCCCCcCcc
Confidence 77777777777666666677777777777777766 4554444333 3445555555556656
Q ss_pred CCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF 512 (614)
Q Consensus 433 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 512 (614)
.+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. ++.|+.+++..|.++|.+|.+++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 666677888888888888888887777788888888888888877643 4567788888888888887765543
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.3e-22 Score=191.63 Aligned_cols=181 Identities=24% Similarity=0.261 Sum_probs=138.0
Q ss_pred CCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEE
Q 042884 301 TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILD 380 (614)
Q Consensus 301 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 380 (614)
...++++++++.++.++.. + .+.++.|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 3456777777777765432 2 246777777777776 34443344477777777777777777777777777777777
Q ss_pred ccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcC
Q 042884 381 LSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST 460 (614)
Q Consensus 381 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 460 (614)
+++|+++ .+|...|.. +++|++|+|++|++++..+..|..+++|++|+|++|++++..+..
T Consensus 90 L~~n~l~-~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 90 LANNQLA-SLPLGVFDH------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp CTTSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCccc-ccChhHhcc------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 7777776 555554433 456667777778888777777889999999999999999888888
Q ss_pred CCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884 461 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 461 ~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
|..+++|++|++++|++++..+..|..+++|+.|++++|++++.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999999999988888888999999999999999876
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2e-22 Score=196.40 Aligned_cols=204 Identities=22% Similarity=0.261 Sum_probs=158.9
Q ss_pred CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 356 (614)
.+..+++..+.+.+... ...+++|+.|++++|.+..+ ..+..+++|++|++++|.++ .++ .+ ..+++|++|+
T Consensus 20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-AL-KELTNLTYLI 91 (272)
T ss_dssp HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GG-TTCTTCCEEE
T ss_pred HHHHHHhcCcccccccc---cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hh-cCCCCCCEEE
Confidence 34455666666654433 45678888999988888764 34777888888888888887 343 33 3478888888
Q ss_pred ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcc
Q 042884 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQ 436 (614)
Q Consensus 357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~ 436 (614)
+++|.+++..+..|..+++|++|++++|+++ .++...+..++ +|++|++++|++++..+..
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~------------------~L~~L~L~~n~l~~~~~~~ 152 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT------------------NLTYLNLAHNQLQSLPKGV 152 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCT------------------TCCEEECCSSCCCCCCTTT
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCC------------------CCCEEECCCCccCccCHHH
Confidence 8888888777777888888888888888887 55655554444 4555555566666667777
Q ss_pred ccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884 437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507 (614)
Q Consensus 437 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 507 (614)
|..+++|++|++++|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+.+|.
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 88999999999999999988888889999999999999999988888889999999999999999877663
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=201.25 Aligned_cols=221 Identities=23% Similarity=0.241 Sum_probs=150.8
Q ss_pred CCCcEEEccCCCCCCCCChhH--HhcCCCccEEEccCCCCCCCCCCCC--CCCCccCEEEccCCccccCCC----hhhhh
Q 042884 276 HDLEYVDLSHTKMNGEFPNWL--LENNTKLKTLFLVNDSLAGPFRLPI--HSHKRLRQLDVSNNNFQGHIP----LEIGD 347 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~ 347 (614)
..++.+.+.++.+....-..+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..++
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 457888888887753211110 2245679999999999998888887 889999999999999986555 2223
Q ss_pred cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCc--CC-chhhccCCCCCEEEccCCcccc---------cc
Q 042884 348 ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGE--IP-EHLAVGCVYLDFLALSNNSLEG---------KV 415 (614)
Q Consensus 348 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~~~~L~~L~l~~n~l~~---------~~ 415 (614)
.+++|++|++++|.+.+..+..|..+++|++|++++|++.+. ++ ...+..+++|++|++++|+++. ..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 488999999999999988889999999999999999997642 22 2223567777777777777753 12
Q ss_pred cCCccEEEcCCCcCCccCCccccCC---CcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCC
Q 042884 416 LSLLSGLDLSCNKLIGHIPPQIGNL---TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 492 (614)
Q Consensus 416 ~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~ 492 (614)
+++|++|+|++|++++..|..+..+ ++|++|+|++|+++. +|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 3566666666666665555555444 466666666666663 333332 5666666666666643 22 45556666
Q ss_pred eEeccCCcCc
Q 042884 493 VFSLAFNNLS 502 (614)
Q Consensus 493 ~L~l~~N~l~ 502 (614)
.|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 6666666655
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.9e-22 Score=189.80 Aligned_cols=180 Identities=24% Similarity=0.294 Sum_probs=115.8
Q ss_pred CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 356 (614)
..++++++++.+. .+|..+ .+.+++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 4566777777666 555432 256677777777777666666677777777777777776 34444444467777777
Q ss_pred ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcc
Q 042884 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQ 436 (614)
Q Consensus 357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~ 436 (614)
+++|.+++..+..|..+++|++|++++|+++ .+|...|.. +++|++|+|++|++++..+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~------------------l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR------------------LTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhcc------------------CCcccEEECcCCcCCccCHHH
Confidence 7777777666666667777777777777776 555544433 334445555555666555556
Q ss_pred ccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884 437 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480 (614)
Q Consensus 437 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 480 (614)
|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66777777777777777766666677777777777777776643
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.9e-22 Score=189.85 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=38.5
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCccCEEEccCCc-cccCCChhhhhcCCCccEEEccC-CcCCCCCccchhccccCcEE
Q 042884 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN-FQGHIPLEIGDILPNLISFNISM-NALDGSIPSSFGNINLLKIL 379 (614)
Q Consensus 302 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 379 (614)
++++|++++|+++++.+..|..+++|++|++++|. ++ .++...+..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 34444444444444444444444444444444443 33 33333333344445555544 44444444444445555555
Q ss_pred EccCCccC
Q 042884 380 DLSNNQLT 387 (614)
Q Consensus 380 ~l~~n~l~ 387 (614)
++++|.++
T Consensus 111 ~l~~n~l~ 118 (239)
T 2xwt_C 111 GIFNTGLK 118 (239)
T ss_dssp EEEEECCC
T ss_pred eCCCCCCc
Confidence 55555544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2e-21 Score=192.71 Aligned_cols=193 Identities=18% Similarity=0.334 Sum_probs=134.7
Q ss_pred CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
.+++|++|++++|.+. .++. +..+++|++|++++|.+.++.+ +..+++|+.|++++|.++ .++ .+ ..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~-~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AI-AGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GG-TTCTTCC
T ss_pred HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hh-cCCCCCC
Confidence 4667777777777776 4443 5667777777777777776554 666777777777777776 343 23 3367777
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI 433 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~ 433 (614)
+|++++|.+++.. .+..+++|++|++++|.++ .++. +.. +++|+.|++++|++++..
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~~~~--l~~------------------l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT-NISP--LAG------------------LTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGG------------------CTTCCEEECCSSCCCCCG
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccC-cCcc--ccC------------------CCCccEEEccCCcCCCCh
Confidence 7777777776532 2666777777777777766 3333 233 445556666666666433
Q ss_pred CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcc
Q 042884 434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSG 503 (614)
Q Consensus 434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 503 (614)
+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3 7888899999999999886644 7888899999999999886543 7888899999999999875
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5.8e-22 Score=189.35 Aligned_cols=205 Identities=19% Similarity=0.237 Sum_probs=155.9
Q ss_pred CCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC-CCCCCCCCCCCCCccCEEEccC-CccccCCCh
Q 042884 266 ATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS-LAGPFRLPIHSHKRLRQLDVSN-NNFQGHIPL 343 (614)
Q Consensus 266 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~ 343 (614)
..+|. + .++|++|++++|+++ .+|...|..+++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++.
T Consensus 24 ~~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~ 98 (239)
T 2xwt_C 24 QRIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDP 98 (239)
T ss_dssp SSCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECT
T ss_pred cccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCH
Confidence 34555 3 248999999999998 5555558889999999999997 8888888899999999999998 9998 6666
Q ss_pred hhhhcCCCccEEEccCCcCCCCCccchhccccCc---EEEccCC-ccCCcCCchhhccCCCCC-EEEccCCcccccccCC
Q 042884 344 EIGDILPNLISFNISMNALDGSIPSSFGNINLLK---ILDLSNN-QLTGEIPEHLAVGCVYLD-FLALSNNSLEGKVLSL 418 (614)
Q Consensus 344 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~ 418 (614)
..+..+++|++|++++|.+++ +|. |..+++|+ +|++++| .++ .+|...|.++++|+ .
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~--------------- 160 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLT--------------- 160 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEE---------------
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeE---------------
Confidence 666668999999999999986 454 88888888 9999999 887 67766665555444 4
Q ss_pred ccEEEcCCCcCCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCC-CCCCEEEccCCcCCCCCcccccCCCCCCeEec
Q 042884 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL-KHIESLDLSYNKLNGKIPHQLVELKTLEVFSL 496 (614)
Q Consensus 419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l 496 (614)
|++++|+++...+..|.. ++|++|++++|+ ++++.+..|.++ ++|+.|++++|++++..+. .+++|+.|++
T Consensus 161 ---L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l 233 (239)
T 2xwt_C 161 ---LKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIA 233 (239)
T ss_dssp ---EECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEEC
T ss_pred ---EEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeec
Confidence 444444555344445555 788888888884 887777888888 8888888888888854333 5667888888
Q ss_pred cCCc
Q 042884 497 AFNN 500 (614)
Q Consensus 497 ~~N~ 500 (614)
+++.
T Consensus 234 ~~~~ 237 (239)
T 2xwt_C 234 RNTW 237 (239)
T ss_dssp TTC-
T ss_pred cCcc
Confidence 7763
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.8e-22 Score=205.53 Aligned_cols=243 Identities=18% Similarity=0.196 Sum_probs=174.6
Q ss_pred CCCCCCccccCCCCCcEEEccCCCCCCCCCh---hHHhcCC-CccEEEccCCCCCCCCCCCCCCC-----CccCEEEccC
Q 042884 264 DGATFPKFLYHQHDLEYVDLSHTKMNGEFPN---WLLENNT-KLKTLFLVNDSLAGPFRLPIHSH-----KRLRQLDVSN 334 (614)
Q Consensus 264 ~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~ 334 (614)
..+.+|..+...++|++|++++|.+.+..+. ..+..++ +|++|++++|.+....+..+..+ ++|++|++++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 3344555555666799999999998844331 3366777 89999999998887665555554 8899999999
Q ss_pred CccccCCChhhhh---cC-CCccEEEccCCcCCCCCccchhc-----cccCcEEEccCCccCCcCCchh---hccCC-CC
Q 042884 335 NNFQGHIPLEIGD---IL-PNLISFNISMNALDGSIPSSFGN-----INLLKILDLSNNQLTGEIPEHL---AVGCV-YL 401 (614)
Q Consensus 335 n~i~~~~~~~~~~---~l-~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~---~~~~~-~L 401 (614)
|.+++..+..+.. .+ ++|++|++++|.+++..+..+.. .++|++|++++|.+++..+..+ +...+ +|
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 9988555544333 13 78999999999988766655443 3589999999998875433332 23344 89
Q ss_pred CEEEccCCcccccc----------c-CCccEEEcCCCcCCcc----CCccccC-CCcCCEEECcCCcCCCCCC----cCC
Q 042884 402 DFLALSNNSLEGKV----------L-SLLSGLDLSCNKLIGH----IPPQIGN-LTRIQTLNLSHNNLTGLIP----STF 461 (614)
Q Consensus 402 ~~L~l~~n~l~~~~----------~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~~ 461 (614)
++|++++|++++.. . ++|++|+|++|++++. ++..+.. .++|++|+|++|.+++..+ ..+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 99999999887533 2 6899999999998863 3445555 3589999999999886544 445
Q ss_pred CCCCCCCEEEccCCcCCCCCc-------ccccCCCCCCeEeccCCcCcccCC
Q 042884 462 SNLKHIESLDLSYNKLNGKIP-------HQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 462 ~~l~~L~~L~ls~N~l~~~~~-------~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
..+++|++|++++|.+..+.+ ..+..+++|+.||+++|++....+
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 778899999999998554333 356677889999999999876533
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.6e-22 Score=205.75 Aligned_cols=248 Identities=19% Similarity=0.172 Sum_probs=192.4
Q ss_pred EEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCC----CCCCCCC-ccCEEEccCCccccCCChhhhhc----CC
Q 042884 280 YVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFR----LPIHSHK-RLRQLDVSNNNFQGHIPLEIGDI----LP 350 (614)
Q Consensus 280 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~----l~ 350 (614)
.++++.|.+++.+|.. +...++|++|++++|.+..... ..+..++ +|++|++++|.+++..+..+... .+
T Consensus 2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999777764 5566669999999999998766 6677888 89999999999986555555442 28
Q ss_pred CccEEEccCCcCCCCCccchhcc-----ccCcEEEccCCccCCcCCchh---hcc-CCCCCEEEccCCccccc-------
Q 042884 351 NLISFNISMNALDGSIPSSFGNI-----NLLKILDLSNNQLTGEIPEHL---AVG-CVYLDFLALSNNSLEGK------- 414 (614)
Q Consensus 351 ~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~---~~~-~~~L~~L~l~~n~l~~~------- 414 (614)
+|++|+|++|.+++..+..+... ++|++|++++|.+++..+..+ +.. .++|++|++++|.+++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999997777655443 899999999999985444333 223 46999999999999841
Q ss_pred ----ccCCccEEEcCCCcCCccCCccc----cCC-CcCCEEECcCCcCCCC----CCcCCCC-CCCCCEEEccCCcCCCC
Q 042884 415 ----VLSLLSGLDLSCNKLIGHIPPQI----GNL-TRIQTLNLSHNNLTGL----IPSTFSN-LKHIESLDLSYNKLNGK 480 (614)
Q Consensus 415 ----~~~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~ls~N~l~~~ 480 (614)
.+++|++|+|++|++++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|++|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 23599999999999997776544 444 6999999999999863 2334444 45999999999999876
Q ss_pred Cc----ccccCCCCCCeEeccCCcCcccC-------CccccccCCcCcccccCCcCCCC
Q 042884 481 IP----HQLVELKTLEVFSLAFNNLSGEI-------PEWKAQFATFNESSYEGNTFLCG 528 (614)
Q Consensus 481 ~~----~~l~~l~~L~~L~l~~N~l~~~~-------~~~~~~~~~l~~~~~~~n~~~c~ 528 (614)
.+ ..+..+++|++|++++|.+.... +..+..+++++.+++++|+....
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 55 34567799999999999954322 23456677888999999987654
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.2e-21 Score=198.29 Aligned_cols=239 Identities=20% Similarity=0.175 Sum_probs=159.3
Q ss_pred cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE-EEc
Q 042884 279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS-FNI 357 (614)
Q Consensus 279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~-L~L 357 (614)
++++.++++++ .+|..+ .+++++|++++|+|+.+.+.+|.++++|++|+|++|.+.+.+|...|..++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666777776 666543 3567777777777777777777777777777777777765667666666666554 555
Q ss_pred cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC-Cccccc-------ccCCccEEEcCCCcC
Q 042884 358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN-NSLEGK-------VLSLLSGLDLSCNKL 429 (614)
Q Consensus 358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~-------~~~~L~~L~L~~n~l 429 (614)
..|+++...|..|..+++|++|++++|+++ .+|...+.....+..+++.+ +++... ....++.|+|++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 667777777777777777788888777776 55655555566666777755 344321 124577788888888
Q ss_pred CccCCccccCCCcCCEEECcC-CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcc
Q 042884 430 IGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEW 508 (614)
Q Consensus 430 ~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 508 (614)
+.+.+..| ...+|++|++++ |.++.+.++.|.++++|++|++++|+|+.+.+..|. .|+.|.+.++.--..+|.
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-
Confidence 75555555 346788888864 667766667788888888888888888855444444 455555544443335665
Q ss_pred ccccCCcCcccccCCcCCCC
Q 042884 509 KAQFATFNESSYEGNTFLCG 528 (614)
Q Consensus 509 ~~~~~~l~~~~~~~n~~~c~ 528 (614)
+..+++|+.+++. +++.|.
T Consensus 242 l~~l~~L~~l~l~-~~~~c~ 260 (350)
T 4ay9_X 242 LEKLVALMEASLT-YPSHCC 260 (350)
T ss_dssp TTTCCSCCEEECS-CHHHHH
T ss_pred chhCcChhhCcCC-CCcccc
Confidence 6667777777764 555554
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.3e-20 Score=190.66 Aligned_cols=206 Identities=18% Similarity=0.140 Sum_probs=111.7
Q ss_pred CEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCE-
Q 042884 125 KYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEE- 203 (614)
Q Consensus 125 ~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~- 203 (614)
++++.++++++ ++|. .+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..+|.+++++++
T Consensus 12 ~~v~C~~~~Lt----~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT----EIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC----SCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCC----ccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 44555555555 4444 22 1355666666666654444455666666666666665544555555555555543
Q ss_pred EEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEc
Q 042884 204 LHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDL 283 (614)
Q Consensus 204 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L 283 (614)
+.+.+|.+. .++...|..+++|+.|++
T Consensus 85 l~~~~N~l~-~l~~~~f~~l~~L~~L~l---------------------------------------------------- 111 (350)
T 4ay9_X 85 RIEKANNLL-YINPEAFQNLPNLQYLLI---------------------------------------------------- 111 (350)
T ss_dssp EEEEETTCC-EECTTSBCCCTTCCEEEE----------------------------------------------------
T ss_pred hcccCCccc-ccCchhhhhccccccccc----------------------------------------------------
Confidence 333444444 233334444444444444
Q ss_pred cCCCCCCCCChhHHhcCCCccEEEccC-CCCCCCCCCCCCCCC-ccCEEEccCCccccCCChhhhhcCCCccEEEccC-C
Q 042884 284 SHTKMNGEFPNWLLENNTKLKTLFLVN-DSLAGPFRLPIHSHK-RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISM-N 360 (614)
Q Consensus 284 s~n~i~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~-n 360 (614)
++|++. .+|...+....++..+++.+ +.+..+....|..+. .++.|++++|.++ .++...+. ..+|+++++++ |
T Consensus 112 ~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n 188 (350)
T 4ay9_X 112 SNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNN 188 (350)
T ss_dssp EEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCT
T ss_pred cccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCC
Confidence 444444 22222233333444555533 344444444555543 4666777777776 56666655 45677777764 5
Q ss_pred cCCCCCccchhccccCcEEEccCCccCCcCCchh
Q 042884 361 ALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHL 394 (614)
Q Consensus 361 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 394 (614)
.++.+.+.+|.++++|++|++++|+++ .+|...
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~ 221 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS
T ss_pred cccCCCHHHhccCcccchhhcCCCCcC-ccChhh
Confidence 565555566777777777777777777 666654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=193.11 Aligned_cols=223 Identities=19% Similarity=0.244 Sum_probs=179.5
Q ss_pred cCCCccEEEccCCCCCCCCCC---CCCCCCccCEEEccCCccccCCChhhh-hcCCCccEEEccCCcCCCCCc----cch
Q 042884 299 NNTKLKTLFLVNDSLAGPFRL---PIHSHKRLRQLDVSNNNFQGHIPLEIG-DILPNLISFNISMNALDGSIP----SSF 370 (614)
Q Consensus 299 ~~~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~----~~~ 370 (614)
....++.+.+.++.+...... .+..+++|++|++++|.+.+..|..++ ..+++|++|++++|.+++..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 344678889888876531111 122346799999999999988887763 458999999999999997554 445
Q ss_pred hccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccc----------cccCCccEEEcCCCcCCccCC--c-cc
Q 042884 371 GNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG----------KVLSLLSGLDLSCNKLIGHIP--P-QI 437 (614)
Q Consensus 371 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~----------~~~~~L~~L~L~~n~l~~~~~--~-~~ 437 (614)
..+++|++|++++|.+. .++...+..+++|++|++++|++.+ ..+++|++|+|++|+++...+ . .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 67999999999999998 6666667899999999999999754 246789999999999973321 1 35
Q ss_pred cCCCcCCEEECcCCcCCCCCCcCCCCC---CCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCC
Q 042884 438 GNLTRIQTLNLSHNNLTGLIPSTFSNL---KHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFAT 514 (614)
Q Consensus 438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 514 (614)
..+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 788999999999999999888777776 69999999999999 6677664 7999999999999964 44 567889
Q ss_pred cCcccccCCcCCC
Q 042884 515 FNESSYEGNTFLC 527 (614)
Q Consensus 515 l~~~~~~~n~~~c 527 (614)
++.+++++|++..
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999753
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.5e-22 Score=208.18 Aligned_cols=239 Identities=15% Similarity=0.182 Sum_probs=181.3
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCCChh---HHhcCCCccEEEccCCCCCCCC---CCC-------CCCCCccCEEEcc
Q 042884 267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNW---LLENNTKLKTLFLVNDSLAGPF---RLP-------IHSHKRLRQLDVS 333 (614)
Q Consensus 267 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~---~~~-------~~~l~~L~~L~l~ 333 (614)
.++..+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.+..+. +.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34566777889999999999887543332 1457889999999987655322 222 3577899999999
Q ss_pred CCccccC----CChhhhhcCCCccEEEccCCcCCCCCccc----hhcc---------ccCcEEEccCCccCC-cCCc--h
Q 042884 334 NNNFQGH----IPLEIGDILPNLISFNISMNALDGSIPSS----FGNI---------NLLKILDLSNNQLTG-EIPE--H 393 (614)
Q Consensus 334 ~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~l~~-~~~~--~ 393 (614)
+|.+++. ++..+.. +++|++|+|++|.++...+.. +..+ ++|++|++++|+++. .+|. .
T Consensus 103 ~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9998752 4444444 899999999999987443333 3344 899999999999872 3332 3
Q ss_pred hhccCCCCCEEEccCCcccc-----------cccCCccEEEcCCCcCC----ccCCccccCCCcCCEEECcCCcCCCC--
Q 042884 394 LAVGCVYLDFLALSNNSLEG-----------KVLSLLSGLDLSCNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGL-- 456 (614)
Q Consensus 394 ~~~~~~~L~~L~l~~n~l~~-----------~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~-- 456 (614)
.+..+++|++|++++|+++. ..+++|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 45678899999999998872 13578999999999986 46677888999999999999999865
Q ss_pred --CCcCC--CCCCCCCEEEccCCcCCC----CCcccc-cCCCCCCeEeccCCcCcccCC
Q 042884 457 --IPSTF--SNLKHIESLDLSYNKLNG----KIPHQL-VELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 457 --~~~~~--~~l~~L~~L~ls~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~~ 506 (614)
++..+ ..+++|+.|++++|.+++ .+|..+ ..+++|++|++++|++++..+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 34555 348999999999999986 377776 568999999999999997653
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=5.7e-21 Score=179.51 Aligned_cols=154 Identities=25% Similarity=0.341 Sum_probs=104.1
Q ss_pred CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEcc
Q 042884 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS 407 (614)
Q Consensus 328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 407 (614)
+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|+++ .++...|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~---------- 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQG---------- 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTT----------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhC----------
Confidence 56777777776 677654 356777777777777666667777777777777777776 333322332
Q ss_pred CCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccC
Q 042884 408 NNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 487 (614)
Q Consensus 408 ~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~ 487 (614)
+++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..
T Consensus 79 --------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 79 --------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp --------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 344555555566666555566677777777777777777776777777777777777777777666666777
Q ss_pred CCCCCeEeccCCcCccc
Q 042884 488 LKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 488 l~~L~~L~l~~N~l~~~ 504 (614)
+++|+.|++++|++.+.
T Consensus 151 l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred CCCCCEEEeCCCCcCCC
Confidence 77777777777777653
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.7e-20 Score=186.15 Aligned_cols=207 Identities=21% Similarity=0.291 Sum_probs=160.0
Q ss_pred EccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc
Q 042884 282 DLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA 361 (614)
Q Consensus 282 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 361 (614)
.+..+.+.+.++ ...+++|++|++++|.+..+. .+..+++|+.|++++|.++ .++. +..+++|++|++++|.
T Consensus 25 ~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 25 AAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCC
T ss_pred HhCCCCcCceec---HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCc
Confidence 445555553333 446778888889888888753 5777888888888888887 5555 4448888888888888
Q ss_pred CCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCC
Q 042884 362 LDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 441 (614)
Q Consensus 362 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 441 (614)
+++. ..+..+++|++|++++|.++ .++. +..++ +|++|++++|++++..+ +..++
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~------------------~L~~L~l~~n~l~~~~~--l~~l~ 151 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLS------------------NLQVLYLDLNQITNISP--LAGLT 151 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCC-CCGG--GTTCT------------------TCCEEECCSSCCCCCGG--GGGCT
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCC-Cchh--hcCCC------------------CCCEEECCCCccCcCcc--ccCCC
Confidence 8754 35788888888888888887 4443 34444 45555555566654433 88999
Q ss_pred cCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCccccc
Q 042884 442 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYE 521 (614)
Q Consensus 442 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~ 521 (614)
+|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++++.++++
T Consensus 152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 99999999999997644 8999999999999999996544 8899999999999999996553 7888999999999
Q ss_pred CCcCCC
Q 042884 522 GNTFLC 527 (614)
Q Consensus 522 ~n~~~c 527 (614)
+|++.+
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 999865
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.2e-22 Score=209.00 Aligned_cols=238 Identities=18% Similarity=0.184 Sum_probs=191.8
Q ss_pred CCChhHHhcCCCccEEEccCCCCCCCCC----CCCCCCCccCEEEccCCc---cccCCChhh------hhcCCCccEEEc
Q 042884 291 EFPNWLLENNTKLKTLFLVNDSLAGPFR----LPIHSHKRLRQLDVSNNN---FQGHIPLEI------GDILPNLISFNI 357 (614)
Q Consensus 291 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~---i~~~~~~~~------~~~l~~L~~L~L 357 (614)
.++.. +..+++|++|++++|.+....+ ..+..+++|+.|++++|. +.+.+|..+ +..+++|++|+|
T Consensus 23 ~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 35554 6788999999999999886533 347789999999999964 444556554 244899999999
Q ss_pred cCCcCCC----CCccchhccccCcEEEccCCccCCcCCchhh---ccC---------CCCCEEEccCCccccc-------
Q 042884 358 SMNALDG----SIPSSFGNINLLKILDLSNNQLTGEIPEHLA---VGC---------VYLDFLALSNNSLEGK------- 414 (614)
Q Consensus 358 ~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~---------~~L~~L~l~~n~l~~~------- 414 (614)
++|.++. .++..+..+++|++|++++|.+++..+..+. ..+ ++|++|++++|+++..
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999997 4677889999999999999999743333332 223 8999999999999731
Q ss_pred ---ccCCccEEEcCCCcCCc-----cCCccccCCCcCCEEECcCCcCC----CCCCcCCCCCCCCCEEEccCCcCCCC--
Q 042884 415 ---VLSLLSGLDLSCNKLIG-----HIPPQIGNLTRIQTLNLSHNNLT----GLIPSTFSNLKHIESLDLSYNKLNGK-- 480 (614)
Q Consensus 415 ---~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ls~N~l~~~-- 480 (614)
.+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|+.|++++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 35799999999999983 34447889999999999999996 55677889999999999999999865
Q ss_pred --CcccccC--CCCCCeEeccCCcCcc----cCCccc-cccCCcCcccccCCcCCCCC
Q 042884 481 --IPHQLVE--LKTLEVFSLAFNNLSG----EIPEWK-AQFATFNESSYEGNTFLCGL 529 (614)
Q Consensus 481 --~~~~l~~--l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~~~~~~n~~~c~~ 529 (614)
+|..+.. +++|++|++++|++++ .+|..+ ..+++++.+++++|++....
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5666644 8999999999999997 467656 55799999999999988765
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=9.1e-21 Score=178.12 Aligned_cols=156 Identities=23% Similarity=0.290 Sum_probs=124.5
Q ss_pred CEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCc-cchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEc
Q 042884 328 RQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIP-SSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLAL 406 (614)
Q Consensus 328 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 406 (614)
+.+++++|.++ .+|..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|+++ .++...|.+
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~--------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEG--------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTT---------
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCC---------
Confidence 57888888887 677655 3457888888888886644 45788888888888888887 555544433
Q ss_pred cCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCccccc
Q 042884 407 SNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 486 (614)
Q Consensus 407 ~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~ 486 (614)
+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|.
T Consensus 80 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 80 ---------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp ---------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred ---------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 45566677777788877788888899999999999999888888888899999999999999888888888
Q ss_pred CCCCCCeEeccCCcCcccCC
Q 042884 487 ELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 487 ~l~~L~~L~l~~N~l~~~~~ 506 (614)
.+++|+.|++++|++++.++
T Consensus 151 ~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCTTCCEEECCSCCEECSGG
T ss_pred CCCCCCEEEecCcCCcCCCc
Confidence 88899999999999887655
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=6.3e-21 Score=192.24 Aligned_cols=240 Identities=19% Similarity=0.176 Sum_probs=178.2
Q ss_pred CCcEEEccCCCCCCCCChhHHhcC--CCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccC-CChhhhhcCCCcc
Q 042884 277 DLEYVDLSHTKMNGEFPNWLLENN--TKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGH-IPLEIGDILPNLI 353 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~ 353 (614)
.++.++++++.+. + ..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+ ..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence 4778888888775 2 235555 7889999999988876555 44688999999999988744 44433 4488999
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCC-ccCCcCCchhhccCCCCCEEEccCC-ccccc-------ccC-CccEEE
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNN-QLTGEIPEHLAVGCVYLDFLALSNN-SLEGK-------VLS-LLSGLD 423 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-------~~~-~L~~L~ 423 (614)
+|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++. .++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999888777888888899999999998 5664323344577889999999998 77752 356 899999
Q ss_pred cCCC--cCC-ccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEccCCcCCCCCcc---cccCCCCCCeEec
Q 042884 424 LSCN--KLI-GHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPH---QLVELKTLEVFSL 496 (614)
Q Consensus 424 L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~---~l~~l~~L~~L~l 496 (614)
+++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..+. .+..+++|+.|++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEEC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEec
Confidence 9999 455 3456677788999999999998 776667788888999999999996 23333 5778899999999
Q ss_pred cCCcCcccCCcccccc-CCcCcccccCCcCCCC
Q 042884 497 AFNNLSGEIPEWKAQF-ATFNESSYEGNTFLCG 528 (614)
Q Consensus 497 ~~N~l~~~~~~~~~~~-~~l~~~~~~~n~~~c~ 528 (614)
++| ++ ...+..+ ..+..+++++|.+...
T Consensus 280 ~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 280 FGI-VP---DGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TTS-SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred cCc-cC---HHHHHHHHhhCcceEEecccCccc
Confidence 988 33 2223333 2466777776665443
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=9.4e-22 Score=198.30 Aligned_cols=229 Identities=15% Similarity=0.124 Sum_probs=152.3
Q ss_pred CCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCC-CCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884 276 HDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGP-FRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354 (614)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~ 354 (614)
++++.|++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|++++|.+++..+..+.. +++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSE
T ss_pred ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCE
Confidence 5666666666666654444 23566677777776665543 3334556667777777777666445544444 677777
Q ss_pred EEccCC-cCCCC-CccchhccccCcEEEccCC-ccCCcCCchhhccCC-CCCEEEccCC--cccc-------cccCCccE
Q 042884 355 FNISMN-ALDGS-IPSSFGNINLLKILDLSNN-QLTGEIPEHLAVGCV-YLDFLALSNN--SLEG-------KVLSLLSG 421 (614)
Q Consensus 355 L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~-~L~~L~l~~n--~l~~-------~~~~~L~~ 421 (614)
|++++| .+++. .+..+..+++|++|++++| .+++......+..++ +|++|++++| .+++ ..+++|++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 777777 45542 4555666777777777777 665332233345666 7777777777 3432 23678888
Q ss_pred EEcCCCc-CCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC-CCCCeEeccC
Q 042884 422 LDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSLAF 498 (614)
Q Consensus 422 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l-~~L~~L~l~~ 498 (614)
|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +.. +.+..+ ..++.|++++
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINC 302 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESC
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEec
Confidence 8888888 676777789999999999999995 33222235788999999999999 442 234443 2477788999
Q ss_pred CcCcccCCccccc
Q 042884 499 NNLSGEIPEWKAQ 511 (614)
Q Consensus 499 N~l~~~~~~~~~~ 511 (614)
|++++..|.++..
T Consensus 303 n~l~~~~~~~~~~ 315 (336)
T 2ast_B 303 SHFTTIARPTIGN 315 (336)
T ss_dssp CCSCCTTCSSCSS
T ss_pred ccCccccCCcccc
Confidence 9999988875543
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1e-20 Score=192.23 Aligned_cols=178 Identities=21% Similarity=0.215 Sum_probs=87.7
Q ss_pred EEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-ccccCcEEEccCCccCCcCCchhhccCCCCCEEEcc
Q 042884 329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-NINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALS 407 (614)
Q Consensus 329 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 407 (614)
.++++++.++ .+|..+ .+.++.|+|++|.+++..+..|. .+++|++|++++|+++ .++...|..+++|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L--- 93 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYL--- 93 (361)
T ss_dssp EEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE---
T ss_pred EEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEE---
Confidence 4555555554 444433 23355555555555554444454 5555555555555555 3443333333333333
Q ss_pred CCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc--
Q 042884 408 NNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL-- 485 (614)
Q Consensus 408 ~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l-- 485 (614)
+|++|++++..+..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|+|+++.+..|
T Consensus 94 ---------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 158 (361)
T 2xot_A 94 ---------------DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158 (361)
T ss_dssp ---------------ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-
T ss_pred ---------------ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC
Confidence 333333333344445555555555555555555555555555555555555555554333333
Q ss_pred -cCCCCCCeEeccCCcCcccCCccccccCC--cCcccccCCcCCCCC
Q 042884 486 -VELKTLEVFSLAFNNLSGEIPEWKAQFAT--FNESSYEGNTFLCGL 529 (614)
Q Consensus 486 -~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~~~~~~n~~~c~~ 529 (614)
..+++|+.|+|++|+++...+..+..++. ++.+++.+|||.|+|
T Consensus 159 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp ---CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 34555555555555555433333444433 245555666666655
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.8e-20 Score=196.90 Aligned_cols=165 Identities=27% Similarity=0.373 Sum_probs=100.7
Q ss_pred ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEE
Q 042884 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA 405 (614)
Q Consensus 326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 405 (614)
+|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.++ .+|. .+++|+.|+
T Consensus 81 ~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 146 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYIN 146 (571)
T ss_dssp TCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEE
T ss_pred CCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEe
Confidence 4444444444444 344 113444444444444443 222 222 4444444444444 2333 234444444
Q ss_pred ccCCccccc--ccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCC-------CEEEccCCc
Q 042884 406 LSNNSLEGK--VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI-------ESLDLSYNK 476 (614)
Q Consensus 406 l~~n~l~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~ls~N~ 476 (614)
+++|.+++. .+++|+.|+|++|++++ +|. |. ++|+.|+|++|+|+.+ |. |.. +| +.|++++|+
T Consensus 147 Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 147 ADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSC
T ss_pred CCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCc
Confidence 444444431 24567778888888875 555 55 8999999999999844 44 554 67 999999999
Q ss_pred CCCCCcccccCCCCCCeEeccCCcCcccCCccccccC
Q 042884 477 LNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFA 513 (614)
Q Consensus 477 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 513 (614)
|+ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 98 5777777899999999999999988777665543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2e-19 Score=167.76 Aligned_cols=179 Identities=21% Similarity=0.231 Sum_probs=128.2
Q ss_pred cEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccC
Q 042884 304 KTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSN 383 (614)
Q Consensus 304 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 383 (614)
+.++.+++.++.++.. ..+++++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCC---CCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4566666666654332 2357777788777776 55555555577777777777777766666677777777777777
Q ss_pred CccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCC
Q 042884 384 NQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 463 (614)
Q Consensus 384 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 463 (614)
|+++ .+|...+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 86 n~l~-~~~~~~~~~l~------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 86 NQLQ-SLPNGVFDKLT------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp SCCC-CCCTTTTTTCT------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CcCC-ccCHhHhcCcc------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 7776 55555544444 4455555555666566667888889999999999988877777888
Q ss_pred CCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884 464 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF 512 (614)
Q Consensus 464 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 512 (614)
+++|+.|++++|.+.+ .++.|+.|+++.|++++.+|.+++.+
T Consensus 147 l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 8999999999997764 34578888899999988888765544
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=166.74 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=111.9
Q ss_pred cEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc
Q 042884 353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH 432 (614)
Q Consensus 353 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~ 432 (614)
+.+++++|.++. +|..+ ...+++|++++|++++..|...|..+++|+ .|+|++|++++.
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~------------------~L~L~~N~i~~i 72 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLR------------------KINFSNNKITDI 72 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCC------------------EEECCSSCCCEE
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCC------------------EEECCCCcCCEE
Confidence 467777877774 44433 234677888888877443555554444444 444444455555
Q ss_pred CCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF 512 (614)
Q Consensus 433 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 512 (614)
.+.+|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+
T Consensus 73 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 152 (220)
T 2v70_A 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence 66677778888888888888877777777788888888888888887777777778888888888888887777777777
Q ss_pred CCcCcccccCCcCCCCCCC
Q 042884 513 ATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 513 ~~l~~~~~~~n~~~c~~~~ 531 (614)
++++.+++++|++.|+|+.
T Consensus 153 ~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 153 HSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTCCEEECCSCCEECSGGG
T ss_pred CCCCEEEecCcCCcCCCch
Confidence 7888888888888887764
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.2e-19 Score=165.48 Aligned_cols=181 Identities=23% Similarity=0.201 Sum_probs=139.7
Q ss_pred cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884 279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358 (614)
Q Consensus 279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~ 358 (614)
+.++.+++.+. .+|.. ..+++++|++++|.+.++.+..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 56777777776 56643 3467888888888888877777888889999999999887 6676666668899999999
Q ss_pred CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcccc
Q 042884 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIG 438 (614)
Q Consensus 359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~ 438 (614)
+|.+++..+..|..+++|++|++++|+++ .+|...+..+++|+ .|++++|++++..+..|.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~------------------~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLK------------------DLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC------------------EEECCSSCCSCCCTTTTT
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCC------------------EEECCCCccceeCHHHhc
Confidence 99988777777888999999999999988 66666555544444 445555555556666688
Q ss_pred CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 042884 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 490 (614)
Q Consensus 439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~ 490 (614)
.+++|++|++++|.+.+ .+++|+.|+++.|++++.+|+.++.++.
T Consensus 146 ~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 88999999999997763 4568889999999999999988776654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.9e-19 Score=166.41 Aligned_cols=157 Identities=24% Similarity=0.246 Sum_probs=126.4
Q ss_pred ccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEE
Q 042884 326 RLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLA 405 (614)
Q Consensus 326 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 405 (614)
+-+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|++. .+|...|..+++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~--- 91 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLT--- 91 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC---
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcC---
Confidence 4567888888886 777655 478999999999999888888999999999999999987 77776665555444
Q ss_pred ccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccc
Q 042884 406 LSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 485 (614)
Q Consensus 406 l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l 485 (614)
.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 92 ---------------~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 92 ---------------VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp ---------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred ---------------EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 4445555555566677888999999999999998 557778889999999999999997777788
Q ss_pred cCCCCCCeEeccCCcCcccCC
Q 042884 486 VELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 486 ~~l~~L~~L~l~~N~l~~~~~ 506 (614)
..+++|+.|++++|++.+.++
T Consensus 156 ~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCTTCCEEECTTSCBCTTBG
T ss_pred hCCCCCCEEEeeCCCccCCcc
Confidence 889999999999999987655
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.6e-19 Score=172.17 Aligned_cols=190 Identities=23% Similarity=0.306 Sum_probs=137.0
Q ss_pred CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357 (614)
Q Consensus 278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L 357 (614)
+..+.+..+.+.+..+ ...+++|++|++++|.+..+. .+..+++|+.|++++|.++ .++. +..+++|++|++
T Consensus 26 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEEC
T ss_pred HHHHHhcCCCcccccc---hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEEC
Confidence 3344566666654333 346777888888888877653 3667778888888888887 4444 334778888888
Q ss_pred cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccc
Q 042884 358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI 437 (614)
Q Consensus 358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~ 437 (614)
++|.+++. ..+..+++|++|++++|+++ .++. +.. +++|+.|++++|++++. ..+
T Consensus 98 ~~n~l~~~--~~l~~l~~L~~L~L~~n~i~-~~~~--l~~------------------l~~L~~L~l~~n~l~~~--~~l 152 (291)
T 1h6t_A 98 DENKVKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVH------------------LPQLESLYLGNNKITDI--TVL 152 (291)
T ss_dssp CSSCCCCG--GGGTTCTTCCEEECTTSCCC-CCGG--GGG------------------CTTCCEEECCSSCCCCC--GGG
T ss_pred CCCcCCCC--hhhccCCCCCEEECCCCcCC-CChh--hcC------------------CCCCCEEEccCCcCCcc--hhh
Confidence 88887753 33777788888888888776 3322 233 44555556666666544 568
Q ss_pred cCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884 438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
..+++|++|++++|++++..+ +..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++..
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 889999999999999987755 8889999999999999985 44 388899999999999998853
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=8e-19 Score=164.81 Aligned_cols=157 Identities=24% Similarity=0.276 Sum_probs=121.0
Q ss_pred cEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCcc
Q 042884 353 ISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGH 432 (614)
Q Consensus 353 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~ 432 (614)
+.++++++.++. +|..+. ++++.|++++|.++ .++...|..+++ |+.|+|++|++++.
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~------------------L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKK------------------LRRIDLSNNQISEL 71 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTT------------------CCEEECCSSCCCEE
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCC------------------CCEEECCCCcCCCc
Confidence 567888888874 444433 67888888888887 566655544444 44445555555556
Q ss_pred CCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCcccccc
Q 042884 433 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQF 512 (614)
Q Consensus 433 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 512 (614)
.|..|.++++|++|+|++|+++++.+..|.++++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 77788888888888888888887777778888888888888888888888888888888888888888887777777888
Q ss_pred CCcCcccccCCcCCCCCCC
Q 042884 513 ATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 513 ~~l~~~~~~~n~~~c~~~~ 531 (614)
++++.+++++|||.|+|++
T Consensus 152 ~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 152 RAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTCCEEECCSSCEECSGGG
T ss_pred CCCCEEEeCCCCcCCCCcc
Confidence 8888888888888888864
No 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=1.4e-18 Score=159.53 Aligned_cols=154 Identities=25% Similarity=0.398 Sum_probs=89.3
Q ss_pred cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCc-cccCCCcCCEEECcCCcCCC
Q 042884 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPP-QIGNLTRIQTLNLSHNNLTG 455 (614)
Q Consensus 377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 455 (614)
+++++++|.++ .+|..++. ++++|++++| ++++..+. .|..+++|++|+|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n------------------~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDN------------------ELGRISSDGLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSC------------------CCCSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCC------------------cCCccCCccccccCCCCCEEECCCCCCCC
Confidence 67889999887 78876532 4555555555 44444332 35555556666666665555
Q ss_pred CCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC----
Q 042884 456 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL---- 531 (614)
Q Consensus 456 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~---- 531 (614)
..|..|.++++|++|++++|+|++..|..|..+++|++|++++|++++..|..+..+++++.+++++|++.|+|+.
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~ 148 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH
Confidence 5555555555566666666665555555555555566666666665555555555555555555666666555543
Q ss_pred ------------CCCCCCCCCCCCCCCCCCCCC
Q 042884 532 ------------PICRSPATTPEASIGNERDDN 552 (614)
Q Consensus 532 ------------~~c~~~~~~~~~~~~~~~~~~ 552 (614)
..|..|....+..........
T Consensus 149 ~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~ 181 (192)
T 1w8a_A 149 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181 (192)
T ss_dssp HHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTT
T ss_pred HHHHHcCCCCCCCCCCCChHHcCCChhhCcHhh
Confidence 146667666655554444333
No 108
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=160.19 Aligned_cols=151 Identities=23% Similarity=0.369 Sum_probs=120.1
Q ss_pred cEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884 377 KILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 456 (614)
Q Consensus 377 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 456 (614)
+++++++|.++ .+|..+ ++.+++|++++|+++ .+|..|.++++|++|+|++|.++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---------------------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---------------------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL 69 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---------------------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CEEEcCCCCCC-cCCCCC---------------------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe
Confidence 57888888887 777654 345666777777776 5667888899999999999999988
Q ss_pred CCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCCC----
Q 042884 457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP---- 532 (614)
Q Consensus 457 ~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~---- 532 (614)
.+..|.++++|++|++++|+|+++.|..|..+++|++|+|++|+++...+..+..+++++.+++++|||.|+|+..
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHH
Confidence 8888999999999999999999888888888999999999999998776667888888999999999999988542
Q ss_pred ------------CCCCCCCCCCCCCCCCCC
Q 042884 533 ------------ICRSPATTPEASIGNERD 550 (614)
Q Consensus 533 ------------~c~~~~~~~~~~~~~~~~ 550 (614)
.|..|....+........
T Consensus 150 ~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~ 179 (193)
T 2wfh_A 150 WVKSEYKEPGIARCAGPGEMADKLLLTTPS 179 (193)
T ss_dssp HHHHSSCCCSCCBEEESGGGTTCBTTTSCG
T ss_pred HHHhccCCCCCcCcCCchHHCCCCcccCCh
Confidence 466666655555544443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=9.8e-19 Score=177.59 Aligned_cols=160 Identities=28% Similarity=0.281 Sum_probs=116.6
Q ss_pred ccCEEEccCCccccCCChhhhh-cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEE
Q 042884 326 RLRQLDVSNNNFQGHIPLEIGD-ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL 404 (614)
Q Consensus 326 ~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 404 (614)
.++.|++++|.++ .++...+. .+++|++|+|++|++++..+..|..+++|++|+|++|+++ .++...|..+++|++
T Consensus 40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~- 116 (361)
T 2xot_A 40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEV- 116 (361)
T ss_dssp TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCE-
T ss_pred CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCE-
Confidence 4566666666666 34444433 4677777777777777666677777888888888888877 566655555444444
Q ss_pred EccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCC---CCCCCCCEEEccCCcCCCCC
Q 042884 405 ALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF---SNLKHIESLDLSYNKLNGKI 481 (614)
Q Consensus 405 ~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~ 481 (614)
|+|++|++++..+..|.++++|++|+|++|+++++.+..| ..+++|+.|+|++|+|+.+.
T Consensus 117 -----------------L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 117 -----------------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp -----------------EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred -----------------EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 4444455555667788899999999999999998777766 56899999999999999777
Q ss_pred cccccCCCC--CCeEeccCCcCcccC
Q 042884 482 PHQLVELKT--LEVFSLAFNNLSGEI 505 (614)
Q Consensus 482 ~~~l~~l~~--L~~L~l~~N~l~~~~ 505 (614)
+..+..++. ++.|++++|++.+.+
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred HHHhhhccHhhcceEEecCCCccCCc
Confidence 777888876 488999999998654
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=2.6e-18 Score=182.75 Aligned_cols=186 Identities=25% Similarity=0.344 Sum_probs=130.5
Q ss_pred CCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEE
Q 042884 277 DLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFN 356 (614)
Q Consensus 277 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~ 356 (614)
+++.|++++|.+.+ +|..+ .++|++|++++|.++.++ ..+++|+.|++++|.++ .+|. +. .+|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEE
Confidence 67777777777763 66542 256777777777777543 34567777777777776 3665 32 2677777
Q ss_pred ccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCccccc--ccCCccEEEcCCCcCCccCC
Q 042884 357 ISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGK--VLSLLSGLDLSCNKLIGHIP 434 (614)
Q Consensus 357 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~L~~L~L~~n~l~~~~~ 434 (614)
+++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|+.|++++|++++. ..++|+.|+|++|+++ .+|
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCC
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chh
Confidence 77777775 333 4677777777777776 4555 456777777777776652 1267888888888888 555
Q ss_pred ccccCCCcC-------CEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC
Q 042884 435 PQIGNLTRI-------QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 489 (614)
Q Consensus 435 ~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~ 489 (614)
. |.. +| +.|+|++|.|+. +|..+..+++|+.|++++|++++.+|..+..++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5 554 67 999999999995 566667799999999999999998888877653
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.2e-17 Score=179.63 Aligned_cols=189 Identities=22% Similarity=0.290 Sum_probs=115.6
Q ss_pred cEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEcc
Q 042884 279 EYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNIS 358 (614)
Q Consensus 279 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~ 358 (614)
..+.+..+.+.+..+ +..++.|+.|++++|.+..+. .+..+++|+.|+|++|.++ .++. +..+++|+.|+|+
T Consensus 24 ~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECC
T ss_pred HHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECc
Confidence 334445555543333 345566666666666666543 4566667777777777766 3433 3336777777777
Q ss_pred CCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCcccc
Q 042884 359 MNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIG 438 (614)
Q Consensus 359 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~ 438 (614)
+|.+.+. ..+..+++|+.|+|++|.+. .++. +..+++ |+.|+|++|++++. ..+.
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~------------------L~~L~Ls~N~l~~l--~~l~ 150 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGIS-DING--LVHLPQ------------------LESLYLGNNKITDI--TVLS 150 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCC-CCGG--GGGCTT------------------CSEEECCSSCCCCC--GGGG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCC-CCcc--ccCCCc------------------cCEEECCCCccCCc--hhhc
Confidence 7776642 25666777777777777776 3332 233444 44444444444433 4566
Q ss_pred CCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884 439 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 439 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
.+++|+.|+|++|.+++..| +..+++|+.|+|++|+|++. | .+..+++|+.|+|++|++++.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 77777777777777776655 67777777777777777743 3 466777777777777777653
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=7.6e-18 Score=165.43 Aligned_cols=173 Identities=21% Similarity=0.332 Sum_probs=142.5
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCC
Q 042884 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN 351 (614)
Q Consensus 272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~ 351 (614)
...+++|+.|++++|.+. .++. +..+++|++|++++|.+.++.+ +..+++|+.|++++|.++ .++. + ..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTT
T ss_pred hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCC
Confidence 346789999999999998 5554 7889999999999999998765 889999999999999998 4543 4 44899
Q ss_pred ccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCc
Q 042884 352 LISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG 431 (614)
Q Consensus 352 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~ 431 (614)
|++|++++|.+++. ..+..+++|++|++++|.++ .++ .+..+ ++|+.|++++|++++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l------------------~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DIT--VLSRL------------------TKLDTLSLEDNQISD 170 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-CCG--GGGGC------------------TTCSEEECCSSCCCC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC-cch--hhccC------------------CCCCEEEccCCcccc
Confidence 99999999999865 56889999999999999998 442 23444 445555566666664
Q ss_pred cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCC
Q 042884 432 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 479 (614)
Q Consensus 432 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 479 (614)
..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++..
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 444 88999999999999999875 348999999999999999985
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=5.4e-17 Score=153.39 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=91.7
Q ss_pred CcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEc
Q 042884 278 LEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNI 357 (614)
Q Consensus 278 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L 357 (614)
.+.++.+++.+. .+|..+ .++|++|++++|.+.++.+..|..+++|+.|++++|.++ .++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~--------------- 80 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP--------------- 80 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC---------------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcC---------------
Confidence 355666666665 555431 245555555555555554545555555555555555553 344
Q ss_pred cCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccc
Q 042884 358 SMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQI 437 (614)
Q Consensus 358 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~ 437 (614)
+..|..+++|++|++++|+++ .+|...|..+++|++| +|++|+++ .+|..+
T Consensus 81 ---------~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L------------------~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 81 ---------VGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL------------------FMCCNKLT-ELPRGI 131 (229)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE------------------ECCSSCCC-SCCTTG
T ss_pred ---------hhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE------------------eccCCccc-ccCccc
Confidence 344445555555555555554 4444443333333333 23333333 445566
Q ss_pred cCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCC
Q 042884 438 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 481 (614)
Q Consensus 438 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 481 (614)
..+++|++|+|++|++++..+..|..+++|+.|++++|.+....
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 77888999999999998887788888999999999999887543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.1e-17 Score=179.91 Aligned_cols=188 Identities=21% Similarity=0.276 Sum_probs=102.0
Q ss_pred cCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCE
Q 042884 124 LKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEE 203 (614)
Q Consensus 124 L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 203 (614)
+..+.+..+.+. .+. .+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+. .++. +..+++|+.
T Consensus 23 l~~l~l~~~~i~----~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 23 TIKDNLKKKSVT----DAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHTTCSCTT----SEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCE
T ss_pred HHHHhccCCCcc----ccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCE
Confidence 334455555544 222 245667777777777777643 3 4677777777777777777 3443 667777777
Q ss_pred EEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEc
Q 042884 204 LHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDL 283 (614)
Q Consensus 204 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~L 283 (614)
|+|++|.+.+ ++ .+..+++|+.|++++|.+... +.+..+++|+.|+|
T Consensus 92 L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l------------------------------~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 92 LFLDENKIKD-LS--SLKDLKKLKSLSLEHNGISDI------------------------------NGLVHLPQLESLYL 138 (605)
T ss_dssp EECCSSCCCC-CT--TSTTCTTCCEEECTTSCCCCC------------------------------GGGGGCTTCSEEEC
T ss_pred EECcCCCCCC-Ch--hhccCCCCCEEEecCCCCCCC------------------------------ccccCCCccCEEEC
Confidence 7777777652 22 455566666666666554321 12334555666666
Q ss_pred cCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCC
Q 042884 284 SHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALD 363 (614)
Q Consensus 284 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 363 (614)
++|.+.+ ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.++ .++ .+ ..+++|+.|+|++|.+.
T Consensus 139 s~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l-~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 139 GNNKITD-IT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-AL-AGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCC-CG--GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GG-TTCTTCSEEECCSEEEE
T ss_pred CCCccCC-ch--hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEccCCcCc
Confidence 6665553 22 14455555555555555554433 444455555555555554 222 12 22444444444444444
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=5.7e-18 Score=169.73 Aligned_cols=264 Identities=11% Similarity=0.111 Sum_probs=163.3
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcC--------CCCCCeEECcCCccccc
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCS--------LMHLQELYKVNNDLRGS 165 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~--------l~~L~~L~L~~n~i~~~ 165 (614)
+++|++|+|++|.+.. +...-+. ++.++.+.+..+ .+++.+|.+ +++|+.|++.+ .++.+
T Consensus 48 l~~L~~LdLs~n~i~~---~~~~~~~-~~~~~~~~~~~~-------~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I 115 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM---YSGKAGT-YPNGKFYIYMAN-------FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI 115 (329)
T ss_dssp CTTCCEEEEEEEEECC---EEESSSS-SGGGCCEEECTT-------EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEE
T ss_pred hccCeEEecCcceeEE---ecCcccc-cccccccccccc-------ccCHHHhcccccccccccCCCcEEECCc-cccch
Confidence 5566666666666541 0000001 222333333333 344455666 67777777766 66656
Q ss_pred cCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCc---cccCcccccCCCCcc-EEEccCCccccccc
Q 042884 166 LPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFR---IPISLEPLFNHSRLK-IFDAENNELNAEIT 241 (614)
Q Consensus 166 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~ 241 (614)
.+.+|.+|++|+.+++.+|.+. .++..+|..+.++..+....+... ..+....|.++..|+ .+.+....
T Consensus 116 ~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~------ 188 (329)
T 3sb4_A 116 EDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG------ 188 (329)
T ss_dssp CTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC------
T ss_pred hHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC------
Confidence 6666777777777777777666 666666666655555554442210 011222333444444 22222111
Q ss_pred ccccCCCCCccceeeeccCCCCCCCCCCcc----ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCC
Q 042884 242 ESYSLTTPNFQLQYLLLSSGYGDGATFPKF----LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPF 317 (614)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 317 (614)
.++.. .....+++.+.+.++-.. .....+...+++|+.+++++|+++.+.
T Consensus 189 -------------------------~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 189 -------------------------KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp -------------------------CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred -------------------------cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceec
Confidence 01110 012345566666554221 112222335888999999988888888
Q ss_pred CCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc-EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhc
Q 042884 318 RLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI-SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV 396 (614)
Q Consensus 318 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 396 (614)
..+|.++.+|+.+++.+| +. .++...|..+++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++ .++...|.
T Consensus 243 ~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~ 318 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFG 318 (329)
T ss_dssp TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTC
T ss_pred HhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhc
Confidence 888999999999999887 65 78888888888998 999988 777777889999999999999999988 88888888
Q ss_pred cCCCCCEEEc
Q 042884 397 GCVYLDFLAL 406 (614)
Q Consensus 397 ~~~~L~~L~l 406 (614)
++++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 9988888763
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5e-18 Score=164.00 Aligned_cols=168 Identities=21% Similarity=0.282 Sum_probs=108.8
Q ss_pred CccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEc
Q 042884 302 KLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDL 381 (614)
Q Consensus 302 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 381 (614)
.+..++++++.+..+. .+..+++|+.|++++|.++ .++ .+. .+++|++|++++|++++..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3445555555555433 3455566666666666665 454 232 36667777777766665443 666677777777
Q ss_pred cCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCC
Q 042884 382 SNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 461 (614)
Q Consensus 382 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 461 (614)
++|+++ .+|... .++|+.|++++|++++. ..+..+++|++|++++|++++. ..+
T Consensus 93 ~~N~l~-~l~~~~---------------------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l 146 (263)
T 1xeu_A 93 NRNRLK-NLNGIP---------------------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VML 146 (263)
T ss_dssp CSSCCS-CCTTCC---------------------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGG
T ss_pred CCCccC-CcCccc---------------------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHH
Confidence 777766 343321 13455555555555543 2477788888888888888765 357
Q ss_pred CCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884 462 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 462 ~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 7788888888888888765 5677788888888888888755
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1e-17 Score=167.85 Aligned_cols=287 Identities=13% Similarity=0.052 Sum_probs=207.4
Q ss_pred CCCCCEEeCCCCCCCccchHHHhh-ccCCcEEeccCccccCCccCCCCCCCCCCCCEEeCcCcccCCCcchhhHhhhc--
Q 042884 44 FTNLEYSTLSGSSLHISLLQSIAS-LFPSLKNLSMSYCEVNGVVRGQGFPHFKSLEHLNMERARIAPNTSFLQIIGES-- 120 (614)
Q Consensus 44 l~~L~~L~Ls~n~~~~~~~~~~~~-l~~l~~l~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~-- 120 (614)
+.+++.|+++++ +.......+.. +.+|++|++++|........ .+.++.++.+.+..+. +|+..+..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~~------I~~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMANF------VPAYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTTE------ECTTTTEEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc---cccccccccccccccc------cCHHHhcccc
Confidence 456777777764 23344455555 78899999999987621111 1222335555555553 44555555
Q ss_pred ------CCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCC----CCCcc
Q 042884 121 ------TPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQ----LTGSI 190 (614)
Q Consensus 121 ------l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~ 190 (614)
+++|+.+++.. .++ .|++.+|.++++|+.+++.+|.+..+.+.+|.++.++..+.+..+. .. .+
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~----~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~-~i 167 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIK----NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN-RW 167 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCC----EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST-TT
T ss_pred cccccccCCCcEEECCc-ccc----chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc-cc
Confidence 89999999998 777 7888899999999999999999998889999999988888876632 22 34
Q ss_pred CCCCCCCCCCCC-EEEcccCcCccccCcccc---cCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCC
Q 042884 191 ASSPLAHLTSIE-ELHLSDNHFRIPISLEPL---FNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGA 266 (614)
Q Consensus 191 ~~~~~~~l~~L~-~L~L~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 266 (614)
...+|..+..|+ .+.+....- ++...+ ....++..+.+.++-...
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~~---------------------------- 216 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDNA---------------------------- 216 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCHH----------------------------
T ss_pred cccccccccccceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecHH----------------------------
Confidence 555577777777 555544321 111111 123344444443321100
Q ss_pred CCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccC-EEEccCCccccCCChhh
Q 042884 267 TFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLR-QLDVSNNNFQGHIPLEI 345 (614)
Q Consensus 267 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~l~~n~i~~~~~~~~ 345 (614)
.+......+++|+.+++++|.+. .+|...|.++.+|+++++.+| +..+...+|.++.+|+ .+++.+ .++ .++...
T Consensus 217 ~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~a 292 (329)
T 3sb4_A 217 DFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGA 292 (329)
T ss_dssp HHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTT
T ss_pred HHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhh
Confidence 00011123789999999999998 888888999999999999998 8888999999999999 999998 776 788888
Q ss_pred hhcCCCccEEEccCCcCCCCCccchhccccCcEEEc
Q 042884 346 GDILPNLISFNISMNALDGSIPSSFGNINLLKILDL 381 (614)
Q Consensus 346 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 381 (614)
|..+++|+.++++.|.++.+.+.+|.++++|+.++.
T Consensus 293 F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888999999999999999888899999999999864
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.7e-17 Score=149.92 Aligned_cols=85 Identities=26% Similarity=0.411 Sum_probs=56.2
Q ss_pred EEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcC
Q 042884 422 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNL 501 (614)
Q Consensus 422 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 501 (614)
|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++
T Consensus 59 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 33333344445555666667777777777777766666677777777777777777766677777777777777777777
Q ss_pred cccCC
Q 042884 502 SGEIP 506 (614)
Q Consensus 502 ~~~~~ 506 (614)
++.++
T Consensus 139 ~c~c~ 143 (192)
T 1w8a_A 139 NCNCH 143 (192)
T ss_dssp CCSGG
T ss_pred cCcCc
Confidence 76544
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=9.3e-17 Score=148.04 Aligned_cols=153 Identities=18% Similarity=0.284 Sum_probs=89.0
Q ss_pred CCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCC
Q 042884 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYL 401 (614)
Q Consensus 322 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 401 (614)
..+++|+.|++++|.++ .+| .+. .+++|++|++++|.++. +..+..+++|++|++++|.+++..|..+ ..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~---- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL-SG---- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC-TT----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh-cC----
Confidence 34455666666666665 444 222 25666666666665442 2345566666666666666653333332 22
Q ss_pred CEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884 402 DFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGK 480 (614)
Q Consensus 402 ~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 480 (614)
+++|++|++++|++++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|++++
T Consensus 111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-
T ss_pred --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-
Confidence 3344444444455554555666777777777777776 5533 3 56777777777777777774
Q ss_pred CcccccCCCCCCeEeccCCcCc
Q 042884 481 IPHQLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 481 ~~~~l~~l~~L~~L~l~~N~l~ 502 (614)
++ .+..+++|+.|++++|++.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC---
T ss_pred hH-HhccCCCCCEEEeeCcccC
Confidence 33 5667777777777777765
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2e-15 Score=154.36 Aligned_cols=201 Identities=14% Similarity=0.169 Sum_probs=120.9
Q ss_pred CCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 274 HQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 274 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
+|++|+.+++++|.+. .++...|. +.+|+.+.+.. .+..+...+|.++++|+.+++..+ ++ .++...|.. .+|+
T Consensus 178 ~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 178 YCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGIT 251 (401)
T ss_dssp TCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCS
T ss_pred CcccCCeeecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCcc
Confidence 4444444444444444 34444343 34555555542 244444555555555555555543 33 445555553 5566
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccC----CcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcC
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLT----GEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKL 429 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l 429 (614)
.+.+. +.++.+...+|.++++|+.+++.+|.+. ..++...|.+|++|+.+++.+ .+
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-------------------~i 311 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-------------------SI 311 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-------------------TC
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-------------------ce
Confidence 66663 3344455566666677777766665542 136666676666666665542 23
Q ss_pred CccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCC-CCCeEeccCCcCc
Q 042884 430 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSLAFNNLS 502 (614)
Q Consensus 430 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~ 502 (614)
+.+...+|.++++|+.++|..+ ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.+++..+.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 3345567778888888888544 666777788888 888888888887766677777774 6788888777654
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1e-15 Score=157.38 Aligned_cols=313 Identities=15% Similarity=0.108 Sum_probs=204.5
Q ss_pred CcCchhhcCCCCCCeEECcCCccccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCccc
Q 042884 140 RILDRGLCSLMHLQELYKVNNDLRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEP 219 (614)
Q Consensus 140 ~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 219 (614)
.|...+|.++.+|+.+.+.. .++.+...+|.+|++|+.+++..+ +. .++..+|.++.+|+.+.+..+- . .+...+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~a 135 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEA 135 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eeccee
Confidence 34455666666677776653 355555666666777777766543 44 5666666666666665554432 1 223333
Q ss_pred ccCCCCccEEEccCCcccccccccccCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhc
Q 042884 220 LFNHSRLKIFDAENNELNAEITESYSLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLEN 299 (614)
Q Consensus 220 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 299 (614)
|.++..++........ ......|..+++|+.+.+.++. . .++...|.+
T Consensus 136 F~~~~~~~~~~~~~~~------------------------------~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~ 183 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT------------------------------VIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSG 183 (394)
T ss_dssp TTTCCCSEEECCTTCC------------------------------EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT
T ss_pred eecccccccccCcccc------------------------------ccchhhhcccCCCcEEecCCcc-c-eeccccccC
Confidence 4433322221111100 0112345677788888886553 2 456666778
Q ss_pred CCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEE
Q 042884 300 NTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKIL 379 (614)
Q Consensus 300 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 379 (614)
+.+|+.+.+..+ +..+...+|..+..|+.+.+..+... +....+. ..+|+.+.+... ++......|.++..|+.+
T Consensus 184 c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 184 CGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESI 258 (394)
T ss_dssp CTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred CCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeE
Confidence 888888887665 56666777888888888877765432 3333333 567888777643 333455677788888888
Q ss_pred EccCCccCCcCCchhhccCCCCCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884 380 DLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 456 (614)
Q Consensus 380 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 456 (614)
.+..+.. .++...|..+..++.+....+.+.. ....+|+.+.+.++ ++.+...+|.++.+|+.+++.++ ++.+
T Consensus 259 ~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I 334 (394)
T 4fs7_A 259 SIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI 334 (394)
T ss_dssp EECCTTC--EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred EcCCCcc--eeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence 8877643 4666677788888887776665443 23567788877654 56566778999999999999654 7777
Q ss_pred CCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCC
Q 042884 457 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFN 499 (614)
Q Consensus 457 ~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N 499 (614)
...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 7789999999999999877 66677788999999999998765
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=2.6e-16 Score=142.39 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=86.1
Q ss_pred CcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCC
Q 042884 376 LKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 455 (614)
Q Consensus 376 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 455 (614)
.+.+++++|.++ .+|..+ +++++.|++++|++++..+..|..+++|++|++++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 66 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---------------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS 66 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCEEEecCCCCc-cCCCCC---------------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE
Confidence 467788888877 666544 3345555555555555555556666667777777776666
Q ss_pred CCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 456 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 456 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++|++.|+|+
T Consensus 67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 666666666677777777777665555556666667777777776665555545566666666777777766654
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.9e-16 Score=146.03 Aligned_cols=150 Identities=21% Similarity=0.310 Sum_probs=115.1
Q ss_pred CCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCc
Q 042884 349 LPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK 428 (614)
Q Consensus 349 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~ 428 (614)
+++|+.|++++|.++ .+| .+..+++|++|++++|.+. .++ . +.. +++|++|++++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~------------------l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISG------------------LSNLERLRIMGKD 99 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTT------------------CTTCCEEEEECTT
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhc------------------CCCCCEEEeECCc
Confidence 556677777777666 333 4666667777777776554 322 1 223 4566666677777
Q ss_pred CCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCc-CCCCCcccccCCCCCCeEeccCCcCcccCCc
Q 042884 429 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK-LNGKIPHQLVELKTLEVFSLAFNNLSGEIPE 507 (614)
Q Consensus 429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 507 (614)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|++++ ++
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~- 175 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR- 175 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-
Confidence 776677889999999999999999998788889999999999999998 66 555 68999999999999999986 44
Q ss_pred cccccCCcCcccccCCcC
Q 042884 508 WKAQFATFNESSYEGNTF 525 (614)
Q Consensus 508 ~~~~~~~l~~~~~~~n~~ 525 (614)
.+..+++++.+++++|+.
T Consensus 176 ~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TGGGCSSCCEEEECBC--
T ss_pred HhccCCCCCEEEeeCccc
Confidence 478899999999999975
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.2e-16 Score=154.19 Aligned_cols=170 Identities=19% Similarity=0.230 Sum_probs=125.7
Q ss_pred CCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccE
Q 042884 275 QHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLIS 354 (614)
Q Consensus 275 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~ 354 (614)
+.++..++++++.+. .++. +..+++|++|++++|.++.+. .+..+++|+.|++++|.++ .++. +..+++|++
T Consensus 18 l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh--hccCCCCCE
Confidence 445666777778777 3442 567888888888888888754 5777888888888888887 5555 444888999
Q ss_pred EEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCC
Q 042884 355 FNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIP 434 (614)
Q Consensus 355 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~ 434 (614)
|++++|++++..+ +.. ++|++|++++|+++ .++. +..+++ |+.|++++|++++. +
T Consensus 90 L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~-~~~~--l~~l~~------------------L~~L~Ls~N~i~~~-~ 144 (263)
T 1xeu_A 90 LSVNRNRLKNLNG--IPS-ACLSRLFLDNNELR-DTDS--LIHLKN------------------LEILSIRNNKLKSI-V 144 (263)
T ss_dssp EECCSSCCSCCTT--CCC-SSCCEEECCSSCCS-BSGG--GTTCTT------------------CCEEECTTSCCCBC-G
T ss_pred EECCCCccCCcCc--ccc-CcccEEEccCCccC-CChh--hcCccc------------------ccEEECCCCcCCCC-h
Confidence 9999998886432 223 88999999999987 4442 344444 44455555555543 3
Q ss_pred ccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCC
Q 042884 435 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 480 (614)
Q Consensus 435 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 480 (614)
.+..+++|++|++++|++++. ..+..+++|+.|++++|.+...
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 578889999999999999877 6788999999999999998854
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=7.8e-19 Score=187.87 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=98.9
Q ss_pred CCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCc-------------CCCCCccchhccccCcEEE-ccCCccC
Q 042884 322 HSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNA-------------LDGSIPSSFGNINLLKILD-LSNNQLT 387 (614)
Q Consensus 322 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~ 387 (614)
...+.|+.|++++|.++ .+|..+.. +++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34667778888888886 77777766 7778888876664 4556677788888888887 6666543
Q ss_pred CcCCchhhc-------cCCCCCEEEccCCcccc----cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCC
Q 042884 388 GEIPEHLAV-------GCVYLDFLALSNNSLEG----KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 456 (614)
Q Consensus 388 ~~~~~~~~~-------~~~~L~~L~l~~n~l~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 456 (614)
.++...+. ....|+.|++++|.+++ ..+++|+.|+|++|+++ .+|..|+.+++|+.|+|++|.++++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence 22221100 01124445555554443 11334555555555555 4444555555555555555555542
Q ss_pred CCcCCCCCCCCCEEEccCCcCCCCC-cccccCCCCCCeEeccCCcCcccC
Q 042884 457 IPSTFSNLKHIESLDLSYNKLNGKI-PHQLVELKTLEVFSLAFNNLSGEI 505 (614)
Q Consensus 457 ~~~~~~~l~~L~~L~ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~ 505 (614)
| .++.+++|+.|++++|+|++.. |..+..+++|+.|++++|++++.+
T Consensus 502 -p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 502 -D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 3 4555555555555555555443 555555555555555555555443
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=5e-15 Score=151.46 Aligned_cols=265 Identities=14% Similarity=0.165 Sum_probs=179.4
Q ss_pred CCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCccccCC
Q 042884 94 FKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPWCVANM 173 (614)
Q Consensus 94 l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 173 (614)
+..++.+.+... ++ .++...+..+ +|+.+.+..+ ++ .|...+|.+. +|+.+.+.. .++.+.+.+|.+|
T Consensus 112 ~~~l~~i~ip~~-i~---~I~~~aF~~~-~L~~i~l~~~-i~----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK---SIPKDAFRNS-QIAKVVLNEG-LK----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp CSSCSEEECCTT-CC---EECTTTTTTC-CCSEEECCTT-CC----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTC
T ss_pred cCCccEEEECCc-cC---EehHhhcccC-CccEEEeCCC-cc----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCc
Confidence 456666666553 22 4444444423 6788777654 44 5666677764 688888875 6666667778888
Q ss_pred CCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCCCCccc
Q 042884 174 TSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTTPNFQL 253 (614)
Q Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 253 (614)
++|+.+++.+|.+. .++..+|. ..+|+.+.+..+ +. .+...+|.++++|+.+++..+ +..+...
T Consensus 180 ~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~----------- 243 (401)
T 4fdw_A 180 YNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQE----------- 243 (401)
T ss_dssp TTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTT-----------
T ss_pred ccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccc-----------
Confidence 88888888888877 77777776 477888888754 44 556667778888888777653 3322222
Q ss_pred eeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCC-----CCCCCCCCCCCccC
Q 042884 254 QYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLA-----GPFRLPIHSHKRLR 328 (614)
Q Consensus 254 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~ 328 (614)
.|.. .+|+.+.+. +.+. .++...|.++++|+.+.+.++.+. .+...+|.++++|+
T Consensus 244 -----------------aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 244 -----------------AFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp -----------------TTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred -----------------cccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 2222 467777773 3344 566666778888888888776654 45667788888888
Q ss_pred EEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCC-CCCEEEcc
Q 042884 329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCV-YLDFLALS 407 (614)
Q Consensus 329 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~ 407 (614)
.+++.+ .++ .++...|..+++|+.+.+..+ ++.+...+|.++ +|+.+++.+|.+. .++...|.+++ .++.+++.
T Consensus 304 ~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 304 RFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp EECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEEC
T ss_pred eEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeC
Confidence 888874 465 677777777888888888554 665667788888 8888888888776 66776676664 56677766
Q ss_pred CCcc
Q 042884 408 NNSL 411 (614)
Q Consensus 408 ~n~l 411 (614)
.+.+
T Consensus 379 ~~~~ 382 (401)
T 4fdw_A 379 AESV 382 (401)
T ss_dssp GGGH
T ss_pred HHHH
Confidence 6543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.8e-18 Score=185.09 Aligned_cols=197 Identities=20% Similarity=0.186 Sum_probs=144.8
Q ss_pred cCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCC-------------CCCCCCCCCCCCCccCEEE-ccCCccc
Q 042884 273 YHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDS-------------LAGPFRLPIHSHKRLRQLD-VSNNNFQ 338 (614)
Q Consensus 273 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~n~i~ 338 (614)
..+++|+.|++++|++. .+|.. ++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 56788899999999887 77877 6788888888887664 3444445566677777777 5555443
Q ss_pred cCCChh------hhh-cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcc
Q 042884 339 GHIPLE------IGD-ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSL 411 (614)
Q Consensus 339 ~~~~~~------~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 411 (614)
.++.. +.. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+ ..+
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l------------- 485 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AAL------------- 485 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGC-------------
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcC-------------
Confidence 22210 000 02358888999888886 455 888888999999998888 787754 344
Q ss_pred cccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCC-CcCCCCCCCCCEEEccCCcCCCCCccc---ccC
Q 042884 412 EGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIPHQ---LVE 487 (614)
Q Consensus 412 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~~~~---l~~ 487 (614)
++|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|.. +..
T Consensus 486 -----~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 486 -----RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558 (567)
T ss_dssp -----TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred -----CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence 455555666666664 45 7899999999999999999887 899999999999999999999765532 334
Q ss_pred CCCCCeEec
Q 042884 488 LKTLEVFSL 496 (614)
Q Consensus 488 l~~L~~L~l 496 (614)
+++|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 788998864
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=6.5e-17 Score=178.49 Aligned_cols=181 Identities=23% Similarity=0.256 Sum_probs=108.8
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhh
Q 042884 268 FPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGD 347 (614)
Q Consensus 268 ~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 347 (614)
.|..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++. .+..+..+++|+.|+|++|.|+ .+|..+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3455667888888888888887 6777644 78888888888888884 4566788888888888888888 77877665
Q ss_pred cCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC
Q 042884 348 ILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN 427 (614)
Q Consensus 348 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n 427 (614)
+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+......+..+++++|.+++..+..|+.|++++|
T Consensus 292 -l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 292 -CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp -GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred -CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence 888888888888887 557778888888888888888886666655322122234678888888888888888888777
Q ss_pred --------cCCccCCccccCCCcCCEEECcCCcCC
Q 042884 428 --------KLIGHIPPQIGNLTRIQTLNLSHNNLT 454 (614)
Q Consensus 428 --------~l~~~~~~~~~~l~~L~~L~L~~n~l~ 454 (614)
.+.+..+..+..+..++...+++|-+.
T Consensus 370 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 370 GEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------CCC
T ss_pred cccccccCCccccccchhhcccccceeeeeccccc
Confidence 222233333444445555555666543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=138.06 Aligned_cols=130 Identities=26% Similarity=0.298 Sum_probs=90.6
Q ss_pred EEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCcCCccC
Q 042884 354 SFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHI 433 (614)
Q Consensus 354 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~ 433 (614)
++++++|.++. +|..+ .++|++|++++|.++ .+|.. |..+ ++|+.|+|++|++++..
T Consensus 14 ~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~-~~~l------------------~~L~~L~Ls~N~i~~i~ 70 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKE-LSNY------------------KHLTLIDLSNNRISTLS 70 (193)
T ss_dssp EEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGG-GGGC------------------TTCCEEECCSSCCCCCC
T ss_pred EEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHH-hhcc------------------cCCCEEECCCCcCCEeC
Confidence 44555555442 22222 135566666666665 55532 2333 33334444444445566
Q ss_pred CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
+.+|.++++|++|+|++|+++++.+..|.++++|+.|++++|+|+...+..|..+++|+.|++++|++.+...
T Consensus 71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 6778888999999999999998888889999999999999999997777778899999999999999986543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=6.2e-17 Score=178.67 Aligned_cols=175 Identities=22% Similarity=0.273 Sum_probs=95.3
Q ss_pred CCCCCCCCCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhc
Q 042884 317 FRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAV 396 (614)
Q Consensus 317 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 396 (614)
.+..+..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+ .
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~ 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-G 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-G
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh-c
Confidence 3455667777777777777776 67776664 777777777777777 66677777777777777777777 666664 5
Q ss_pred cCCCCCEEEccCCcccc-----cccCCccEEEcCCCcCCccCCccccCCCc-CCEEECcCCcCCCCCCcCCCCCCCCCEE
Q 042884 397 GCVYLDFLALSNNSLEG-----KVLSLLSGLDLSCNKLIGHIPPQIGNLTR-IQTLNLSHNNLTGLIPSTFSNLKHIESL 470 (614)
Q Consensus 397 ~~~~L~~L~l~~n~l~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L 470 (614)
.+++|++|+|++|.++. ..+++|+.|+|++|++++.+|..+..+.. +..++|++|.+++.+|. .|+.|
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 66677777777766653 22466777888888888777777655422 23467888888877665 34566
Q ss_pred EccCC--------cCCCCCcccccCCCCCCeEeccCCcCc
Q 042884 471 DLSYN--------KLNGKIPHQLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 471 ~ls~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~ 502 (614)
++++| .+.+..+..+..+..++...+++|-+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 66666 333344444555566667777777765
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.2e-15 Score=134.99 Aligned_cols=134 Identities=20% Similarity=0.183 Sum_probs=97.0
Q ss_pred CCCccEEEccCCcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC
Q 042884 349 LPNLISFNISMNALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN 427 (614)
Q Consensus 349 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n 427 (614)
.++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l------------------~~L~~L~Ls~N 81 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKL------------------PKLKKLELSEN 81 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCC------------------SSCCEEEEESC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccC------------------CCCCEEECcCC
Confidence 466777777777776 566666777888888888888876 33 223333 34445555555
Q ss_pred cCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCc---ccccCCCCCCeEeccCCcCcc
Q 042884 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLEVFSLAFNNLSG 503 (614)
Q Consensus 428 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~ 503 (614)
++++.+|..+..+++|++|++++|.+++... ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 5555566777778888888888888886533 678888888888888888886554 478888888999888888773
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=4e-14 Score=145.45 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=199.8
Q ss_pred CCCCCCCCCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccCc
Q 042884 89 QGFPHFKSLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLPW 168 (614)
Q Consensus 89 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~ 168 (614)
.+|.++.+|+.+.+..+ ++ .+.+..+..+++|+.+++..+ ++ .+...+|.++.+|+.+.+..+ +......
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~---~I~~~aF~~c~~L~~i~lp~~-l~----~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR---EIGEFAFENCSKLEIINIPDS-VK----MIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC---EECTTTTTTCTTCCEECCCTT-CC----EECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred HHhhCCCCceEEEeCCC-cc---CcchhHhhCCCCCcEEEeCCC-ce----EccchhhcccccchhhcccCc-eeeecce
Confidence 47888888888888643 43 555555544788888888654 33 566667888888887777644 4445666
Q ss_pred cccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccccCCC
Q 042884 169 CVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESYSLTT 248 (614)
Q Consensus 169 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 248 (614)
+|.++..++...... +. .+...+|.++++|+.+.+.++.. .+....|.++.+|+.+++..+ +..+..
T Consensus 135 aF~~~~~~~~~~~~~--~~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~------- 201 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VT-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRD------- 201 (394)
T ss_dssp TTTTCCCSEEECCTT--CC-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECT-------
T ss_pred eeecccccccccCcc--cc-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCc-------
Confidence 777765444333222 22 45566688888888888876543 355566777777777776554 222222
Q ss_pred CCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccC
Q 042884 249 PNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLR 328 (614)
Q Consensus 249 ~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 328 (614)
..+..+..|+.+.+..+... +... +.....|+.+.+.. .+..+....|.++..++
T Consensus 202 ---------------------~~F~~~~~L~~i~~~~~~~~--i~~~-~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 202 ---------------------YCFAECILLENMEFPNSLYY--LGDF-ALSKTGVKNIIIPD-SFTELGKSVFYGCTDLE 256 (394)
T ss_dssp ---------------------TTTTTCTTCCBCCCCTTCCE--ECTT-TTTTCCCCEEEECT-TCCEECSSTTTTCSSCC
T ss_pred ---------------------hhhccccccceeecCCCceE--eehh-hcccCCCceEEECC-Cceecccccccccccce
Confidence 22334445555544443221 1222 22334566666543 23334455566666677
Q ss_pred EEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccC
Q 042884 329 QLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSN 408 (614)
Q Consensus 329 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 408 (614)
.+.+..+.. .++...+..+..++.+....+.+. ...|..+.+|+.+.+.++ ++ .+++..|.+|.+|+.+++.+
T Consensus 257 ~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 257 SISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp EEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred eEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC
Confidence 776665533 344444555666666666554332 345667777777777654 44 66677777777666665532
Q ss_pred CcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC
Q 042884 409 NSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488 (614)
Q Consensus 409 n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l 488 (614)
+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+..+|.++
T Consensus 330 ~-------------------v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c 387 (394)
T 4fs7_A 330 L-------------------VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDT 387 (394)
T ss_dssp T-------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTT
T ss_pred c-------------------ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCC
Confidence 1 33344567888888888888766 66677788888888888888765 33 334567777
Q ss_pred CCCCeE
Q 042884 489 KTLEVF 494 (614)
Q Consensus 489 ~~L~~L 494 (614)
++|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 777654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.3e-14 Score=131.17 Aligned_cols=82 Identities=24% Similarity=0.285 Sum_probs=65.6
Q ss_pred CCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884 425 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 425 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 60 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 33333334455577888899999999999888888888899999999999999877666778889999999999999876
Q ss_pred CC
Q 042884 505 IP 506 (614)
Q Consensus 505 ~~ 506 (614)
+|
T Consensus 140 ~~ 141 (177)
T 2o6r_A 140 CP 141 (177)
T ss_dssp HH
T ss_pred Cc
Confidence 65
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.1e-14 Score=130.49 Aligned_cols=106 Identities=25% Similarity=0.233 Sum_probs=72.0
Q ss_pred CCEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcC
Q 042884 401 LDFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 477 (614)
Q Consensus 401 L~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l 477 (614)
.+.+++++|.++. ..++.+++|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|++++|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4567777776654 2246677777777777766666677777777777777777766666667777777777777777
Q ss_pred CCCCcccccCCCCCCeEeccCCcCcccCC
Q 042884 478 NGKIPHQLVELKTLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 478 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 506 (614)
+++.+..|..+++|++|++++|++++..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 76555566677777777777777765543
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.8e-14 Score=129.05 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=111.4
Q ss_pred CCCCcEEEccCCCCC-CCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 275 QHDLEYVDLSHTKMN-GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 275 l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
.++|++|++++|.+. +.+|.. +..+++|++|++++|.+.++ ..+..+++|+.|++++|.+++.+|..+.. +++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence 478999999999997 677766 68899999999999999986 67888999999999999998556655544 89999
Q ss_pred EEEccCCcCCCCC-ccchhccccCcEEEccCCccCCcCCc---hhhccCCCCCEEEccCCccc
Q 042884 354 SFNISMNALDGSI-PSSFGNINLLKILDLSNNQLTGEIPE---HLAVGCVYLDFLALSNNSLE 412 (614)
Q Consensus 354 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~n~l~ 412 (614)
+|++++|.+++.. +..+..+++|++|++++|.++ .+|. ..+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999998653 378899999999999999998 5665 56677788887777777654
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=4.4e-15 Score=130.07 Aligned_cols=127 Identities=21% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCccEEEccCCcCC-CCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCCc
Q 042884 350 PNLISFNISMNALD-GSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCNK 428 (614)
Q Consensus 350 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~ 428 (614)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++ + ..+.. +++|++|++++|.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~------------------l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I--ANLPK------------------LNKLKKLELSDNR 75 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C--TTCCC------------------CTTCCEEECCSSC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c--hhhhc------------------CCCCCEEECCCCc
Confidence 44555555555555 4445555555666666666665552 2 11222 2334444444444
Q ss_pred CCccCCccccCCCcCCEEECcCCcCCCC-CCcCCCCCCCCCEEEccCCcCCCCCc---ccccCCCCCCeEecc
Q 042884 429 LIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLEVFSLA 497 (614)
Q Consensus 429 l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~---~~l~~l~~L~~L~l~ 497 (614)
+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4444555555566666677766666653 23556666677777777776665444 356666667766665
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=2.7e-14 Score=127.84 Aligned_cols=110 Identities=25% Similarity=0.270 Sum_probs=98.6
Q ss_pred CccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEecc
Q 042884 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLA 497 (614)
Q Consensus 418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~ 497 (614)
..+.+++++|+++. +|..+. ++|++|+|++|+++++.|..|.++++|++|++++|+|+++.+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999985 555443 889999999999999999999999999999999999998888888999999999999
Q ss_pred CCcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 498 FNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 498 ~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
+|++++..+..+..+++++.+++++||+.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998777778899999999999999999986
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.8e-14 Score=126.12 Aligned_cols=129 Identities=22% Similarity=0.309 Sum_probs=108.5
Q ss_pred CCCCcEEEccCCCCC-CCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCCcc
Q 042884 275 QHDLEYVDLSHTKMN-GEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPNLI 353 (614)
Q Consensus 275 l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 353 (614)
.++|+.|++++|.+. +.+|.. +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+.. +++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCC
T ss_pred CccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCC
Confidence 468999999999998 677764 68899999999999999986 67888999999999999998556655444 89999
Q ss_pred EEEccCCcCCCC-CccchhccccCcEEEccCCccCCcCCc---hhhccCCCCCEEEccC
Q 042884 354 SFNISMNALDGS-IPSSFGNINLLKILDLSNNQLTGEIPE---HLAVGCVYLDFLALSN 408 (614)
Q Consensus 354 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~l~~ 408 (614)
+|++++|.+++. .+..+..+++|++|++++|.++ .+|. ..+..+++|+.|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCCC
Confidence 999999999874 3478999999999999999998 5555 5677888888888753
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.3e-14 Score=127.70 Aligned_cols=104 Identities=24% Similarity=0.261 Sum_probs=72.6
Q ss_pred CEEEccCCcccc---cccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 042884 402 DFLALSNNSLEG---KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 478 (614)
Q Consensus 402 ~~L~l~~n~l~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~ 478 (614)
+.+++++|.++. ..++.|+.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|+.|+|++|+|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 567777776654 23466777777777777666777777777777777777777666666677777777777777777
Q ss_pred CCCcccccCCCCCCeEeccCCcCcccC
Q 042884 479 GKIPHQLVELKTLEVFSLAFNNLSGEI 505 (614)
Q Consensus 479 ~~~~~~l~~l~~L~~L~l~~N~l~~~~ 505 (614)
++.+..|..+++|++|++++|++.+..
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred eeCHHHhccccCCCEEEeCCCCccccc
Confidence 555555777777777777777777543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=8.3e-14 Score=125.08 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=95.3
Q ss_pred ccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccC
Q 042884 419 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF 498 (614)
Q Consensus 419 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~ 498 (614)
-+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|.++++|+.|+|++|+|+++.+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999997 5555554 7899999999999999899999999999999999999977777788999999999999
Q ss_pred CcCcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 499 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 499 N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
|++++..+..+..+++++.+++++|++.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997777678889999999999999999885
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=9.9e-14 Score=125.12 Aligned_cols=134 Identities=17% Similarity=0.185 Sum_probs=111.6
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCCCccCEEEccCCccccCCChhhhhcCCC
Q 042884 272 LYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNFQGHIPLEIGDILPN 351 (614)
Q Consensus 272 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~ 351 (614)
+..+++|+.|++++|.+. .+|. +....++|++|++++|.++++ ..+..+++|+.|++++|.++ .+|...+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 456789999999999998 5564 234445999999999999986 67889999999999999998 667666566999
Q ss_pred ccEEEccCCcCCCCCcc--chhccccCcEEEccCCccCCcCCch---hhccCCCCCEEEccCCccc
Q 042884 352 LISFNISMNALDGSIPS--SFGNINLLKILDLSNNQLTGEIPEH---LAVGCVYLDFLALSNNSLE 412 (614)
Q Consensus 352 L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~ 412 (614)
|++|++++|.+.. +|. .+..+++|+.|++++|.+. .+|.. ++..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999974 454 7889999999999999998 77775 5678888888888887654
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=5.3e-14 Score=126.92 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=76.1
Q ss_pred CCCccEEEccCCcCCCCCccchhccc-cCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEEcCCC
Q 042884 349 LPNLISFNISMNALDGSIPSSFGNIN-LLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLDLSCN 427 (614)
Q Consensus 349 l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n 427 (614)
+++|++|++++|.++.. +. +..+. +|++|++++|.++ .+ . .+.. +++|++|++++|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~-~~-~-~l~~------------------l~~L~~L~Ls~N 74 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIR-KL-D-GFPL------------------LRRLKTLLVNNN 74 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCC-EE-C-CCCC------------------CSSCCEEECCSS
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCC-cc-c-cccc------------------CCCCCEEECCCC
Confidence 45566666666666533 33 33333 6666666666655 22 1 1122 344555555555
Q ss_pred cCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCccc----ccCCCCCCeEeccCCcCc
Q 042884 428 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----LVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 428 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~----l~~l~~L~~L~l~~N~l~ 502 (614)
++++..+..|..+++|++|++++|.++...+ ..+..+++|+.|++++|.+. .+|.. +..+++|+.||+++|...
T Consensus 75 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555544555677777777777777754322 25667777777777777776 34443 666777777777777654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=9.9e-16 Score=141.23 Aligned_cols=132 Identities=22% Similarity=0.298 Sum_probs=84.3
Q ss_pred hhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEEE
Q 042884 344 EIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGLD 423 (614)
Q Consensus 344 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L~ 423 (614)
.+.. +++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+ ..+ ++|+.|+
T Consensus 43 ~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~------------------~~L~~L~ 99 (198)
T 1ds9_A 43 TLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVA------------------DTLEELW 99 (198)
T ss_dssp HHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHH------------------HHCSEEE
T ss_pred HHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcC------------------CcCCEEE
Confidence 4443 6777777777777765 44 6777777777777777776 555433 223 3344444
Q ss_pred cCCCcCCccCCccccCCCcCCEEECcCCcCCCCCC-cCCCCCCCCCEEEccCCcCCCCCccc----------ccCCCCCC
Q 042884 424 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----------LVELKTLE 492 (614)
Q Consensus 424 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~----------l~~l~~L~ 492 (614)
+++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..+++|+
T Consensus 100 L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 100 ISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred CcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 44444443 23 46677778888888887775433 45677778888888888776554432 66677777
Q ss_pred eEeccCCcCc
Q 042884 493 VFSLAFNNLS 502 (614)
Q Consensus 493 ~L~l~~N~l~ 502 (614)
.|| +|+++
T Consensus 178 ~Ld--~~~i~ 185 (198)
T 1ds9_A 178 KLD--GMPVD 185 (198)
T ss_dssp EEC--CGGGT
T ss_pred EEC--CcccC
Confidence 776 66655
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=5.6e-12 Score=129.37 Aligned_cols=102 Identities=11% Similarity=0.133 Sum_probs=52.5
Q ss_pred CcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCc---cccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCC
Q 042884 123 SLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNND---LRGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLT 199 (614)
Q Consensus 123 ~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 199 (614)
.|+.+.+-.. ++ .|.+.+|.++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ +. .++..+|..+.
T Consensus 65 ~L~sI~iP~s-vt----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDT-VT----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCE 137 (394)
T ss_dssp CCCEEEECTT-CC----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCT
T ss_pred cCEEEEECCC-ee----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhc
Confidence 3555555432 33 4445556666666666665442 44444555666666665555433 33 45555555666
Q ss_pred CCCEEEcccCcCccccCcccccCCCCccEEEccC
Q 042884 200 SIEELHLSDNHFRIPISLEPLFNHSRLKIFDAEN 233 (614)
Q Consensus 200 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 233 (614)
+|+.+.+..+.. .+....|..+..|+.+.+..
T Consensus 138 ~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 138 ELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TCCEEECCTTCC--EECTTTTTTCTTCCEEECCT
T ss_pred ccccccccceee--eecccceecccccccccccc
Confidence 666666544321 23334455555555555543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=6.5e-12 Score=128.89 Aligned_cols=330 Identities=14% Similarity=0.190 Sum_probs=185.8
Q ss_pred CCCCCCC-CCCEEeCcCcccCCCcchhhHhhhcCCCcCEEeccCCc---CCCCCCCcCchhhcCCCCCCeEECcCCcccc
Q 042884 89 QGFPHFK-SLEHLNMERARIAPNTSFLQIIGESTPSLKYLSLSDFT---LSTNSSRILDRGLCSLMHLQELYKVNNDLRG 164 (614)
Q Consensus 89 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~~l~~L~~L~L~~n~---l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~ 164 (614)
.+|.+++ .|+.+.+..+ ++ .+.+..+..+++|+.+.+..+. ++ .|...+|.++.+|+.+.+..+ ++.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt---~Ig~~AF~~C~~L~~i~~~~n~p~~l~----~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VT---EIGSNAFYNCTSLKRVTIQDNKPSCVK----KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CC---EECTTTTTTCTTCCEEEEGGGCCCCCC----EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred hhccCCCCcCEEEEECCC-ee---EEhHHHhhCCccCceEeecCCCCCeee----EechhhchhcccceeeccCCc-cce
Confidence 4677774 5888888654 33 4555555448899999887653 44 566678888888888887654 555
Q ss_pred ccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEcccCcCccccCcccccCCCCccEEEccCCcccccccccc
Q 042884 165 SLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSDNHFRIPISLEPLFNHSRLKIFDAENNELNAEITESY 244 (614)
Q Consensus 165 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 244 (614)
+...+|..+.+|+.+.+..+ +. .++..+|..+..|+.+.+..+- . .+...+|.+ ..|+.+.+..+.. ...
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~~-~~l~~i~ip~~~~-~i~---- 197 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDSV-T-AIEERAFTG-TALTQIHIPAKVT-RIG---- 197 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTT-CCCSEEEECTTCC-EEC----
T ss_pred ehhhhhhhhcccccccccce-ee-eecccceeccccccccccccee-e-Eeccccccc-cceeEEEECCccc-ccc----
Confidence 66778888999999998654 44 6777788889999999887663 2 344444543 4577776654321 111
Q ss_pred cCCCCCccceeeeccCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCChhHHhcCCCccEEEccCCCCCCCCCCCCCCC
Q 042884 245 SLTTPNFQLQYLLLSSGYGDGATFPKFLYHQHDLEYVDLSHTKMNGEFPNWLLENNTKLKTLFLVNDSLAGPFRLPIHSH 324 (614)
Q Consensus 245 ~~~~~~~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 324 (614)
...+..+.+++......+... .+...++........-.. .+...
T Consensus 198 ------------------------~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~ 241 (394)
T 4gt6_A 198 ------------------------TNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALI-----------RYPSQ 241 (394)
T ss_dssp ------------------------TTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEE-----------ECCTT
T ss_pred ------------------------cchhhhccccceecccccccc-cccceeeccccccccccc-----------ccccc
Confidence 122334445555544433322 111111111111000000 01111
Q ss_pred CccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCEE
Q 042884 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFL 404 (614)
Q Consensus 325 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 404 (614)
..+..+.+.. .+. .+....|..+..|+.+.+.++... +...+|.++++|+.+.+. +.++ .+++..|.+|.+|+.+
T Consensus 242 ~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i 316 (394)
T 4gt6_A 242 REDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSI 316 (394)
T ss_dssp CCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEE
T ss_pred cccceEEcCC-cce-EcccceeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEE
Confidence 2233333322 122 333444555666666666544332 445667777777777775 3344 6677777777777666
Q ss_pred EccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCccc
Q 042884 405 ALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 484 (614)
Q Consensus 405 ~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 484 (614)
++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++... . ..
T Consensus 317 ~lp~~-------------------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~ 373 (394)
T 4gt6_A 317 DIPEG-------------------ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NA 373 (394)
T ss_dssp ECCTT-------------------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HT
T ss_pred EeCCc-------------------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hh
Confidence 66432 22234466777777777777543 65566677777888888887777543 1 34
Q ss_pred ccCCCCCCeEeccCCcC
Q 042884 485 LVELKTLEVFSLAFNNL 501 (614)
Q Consensus 485 l~~l~~L~~L~l~~N~l 501 (614)
+.....|+.+.+..|.+
T Consensus 374 ~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 374 ISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCCCC----------
T ss_pred hhccCCCCEEEeCCCCE
Confidence 56667777777766544
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.1e-15 Score=139.07 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=114.2
Q ss_pred CCCccEEEccCCcCCCCCcc------chhccccCcEEEccCCccCCcCCchhhccCCCCCEEEccCCcccccccCCccEE
Q 042884 349 LPNLISFNISMNALDGSIPS------SFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDFLALSNNSLEGKVLSLLSGL 422 (614)
Q Consensus 349 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~L~~L 422 (614)
...++.++++.+.+++..|. .+..+++|++|++++|.++ .+| .+..+++|++|++++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~-------------- 79 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGR-------------- 79 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEE--------------
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCC--------------
Confidence 45566666666666655554 8999999999999999998 577 345555555555555
Q ss_pred EcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCc-ccccCCCCCCeEeccCCcC
Q 042884 423 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFSLAFNNL 501 (614)
Q Consensus 423 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l 501 (614)
|+++ .+|..+..+++|++|++++|++++. | .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++
T Consensus 80 ----n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 80 ----NLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ----EEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ----CCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 4554 4566777889999999999999975 3 68889999999999999985433 4788999999999999999
Q ss_pred cccCCcc----------ccccCCcCcccccCCcC
Q 042884 502 SGEIPEW----------KAQFATFNESSYEGNTF 525 (614)
Q Consensus 502 ~~~~~~~----------~~~~~~l~~~~~~~n~~ 525 (614)
++.+|.. +..+++++.++ +|+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 8776542 56677777665 5553
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=9.3e-13 Score=132.83 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=46.4
Q ss_pred CccEEEcCC-CcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEec
Q 042884 418 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSL 496 (614)
Q Consensus 418 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l 496 (614)
+|+.|+|++ |.+++..+..|.++++|++|+|++|+|++++|..|.++++|+.|+|++|+|+++.+..|..++ |+.|+|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 455555553 555555555555555555555555555555555555555555555555555544444444443 555555
Q ss_pred cCCcCcc
Q 042884 497 AFNNLSG 503 (614)
Q Consensus 497 ~~N~l~~ 503 (614)
++|++.+
T Consensus 111 ~~N~~~c 117 (347)
T 2ifg_A 111 SGNPLHC 117 (347)
T ss_dssp CSSCCCC
T ss_pred eCCCccC
Confidence 5555554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.2e-12 Score=131.92 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=54.6
Q ss_pred EcCCC-cCCccCCccccCCCcCCEEECcC-CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCc
Q 042884 423 DLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNN 500 (614)
Q Consensus 423 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~ 500 (614)
+++++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|+.|+|++|+|+++.|..|.++++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 444 2344 55555555555553 55555555555555555555555555555555555555555555555555
Q ss_pred CcccCCccccccCCcCcccccCCcCCCCCC
Q 042884 501 LSGEIPEWKAQFATFNESSYEGNTFLCGLP 530 (614)
Q Consensus 501 l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 530 (614)
|++..+..+..+. |+.+++.+|++.|+|+
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 5544443333333 5555555555555553
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.7e-13 Score=138.79 Aligned_cols=165 Identities=21% Similarity=0.206 Sum_probs=83.3
Q ss_pred CccCEEEccCCccccCCChhhhh----cCCCccEEEccCCcCCCCCccch-hccccCcEEEccCCccCCcCCchhhccCC
Q 042884 325 KRLRQLDVSNNNFQGHIPLEIGD----ILPNLISFNISMNALDGSIPSSF-GNINLLKILDLSNNQLTGEIPEHLAVGCV 399 (614)
Q Consensus 325 ~~L~~L~l~~n~i~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 399 (614)
+.|+.|++++|.++......+.. ..++|++|+|++|.++......+ ..+++|+.|+|++|.+++.....+...+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777777665222222211 12466677777766653322222 23456666666666665322222211000
Q ss_pred CCCEEEccCCcccccccCCccEEEcCCCcCCc----cCCccccCCCcCCEEECcCCcCCCCC----CcCCCCCCCCCEEE
Q 042884 400 YLDFLALSNNSLEGKVLSLLSGLDLSCNKLIG----HIPPQIGNLTRIQTLNLSHNNLTGLI----PSTFSNLKHIESLD 471 (614)
Q Consensus 400 ~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~ 471 (614)
...+.|++|+|++|.+++ .++..+..+++|++|+|++|.++... ...+...++|++|+
T Consensus 152 --------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 152 --------------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp --------------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred --------------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 012345555555555542 12233455666666666666665321 23445556677777
Q ss_pred ccCCcCCCC----CcccccCCCCCCeEeccCCcCcc
Q 042884 472 LSYNKLNGK----IPHQLVELKTLEVFSLAFNNLSG 503 (614)
Q Consensus 472 ls~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~ 503 (614)
|++|.|+.. ++..+...++|++|+|++|+++.
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 777766532 22334445667777777776653
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=1.5e-09 Score=110.68 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=26.2
Q ss_pred CccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCC
Q 042884 434 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 488 (614)
Q Consensus 434 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l 488 (614)
..+|.++.+|+.++|..+ ++.+...+|.++++|+++.+..+ ++.+...+|.++
T Consensus 303 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 303 PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 344555555555555432 44444455555555555555443 333444445444
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.9e-12 Score=130.91 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=65.5
Q ss_pred CccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchh-----ccccCcEEEccCCccCCcCCchh---hc
Q 042884 325 KRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFG-----NINLLKILDLSNNQLTGEIPEHL---AV 396 (614)
Q Consensus 325 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~---~~ 396 (614)
++|++|++++|.+++.....+...+++|+.|+|++|.++......+. ..++|++|+|++|.+++.....+ +.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 34555555555554222223333345566666666666533222221 24556666666666642111111 12
Q ss_pred cCCCCCEEEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCC----CcCCCCCCCCCEEEc
Q 042884 397 GCVYLDFLALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI----PSTFSNLKHIESLDL 472 (614)
Q Consensus 397 ~~~~L~~L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l 472 (614)
.+++|++|++++|.+++... ..++..+...++|++|+|++|.++... ...+...++|++|+|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~--------------~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGL--------------ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHH--------------HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred cCCCcCEEeCCCCCCCcHHH--------------HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence 33344444444443332100 011233444556666666666655321 122334456666666
Q ss_pred cCCcCCCC
Q 042884 473 SYNKLNGK 480 (614)
Q Consensus 473 s~N~l~~~ 480 (614)
++|.|...
T Consensus 247 s~N~i~~~ 254 (372)
T 3un9_A 247 YFNELSSE 254 (372)
T ss_dssp TTSSCCHH
T ss_pred cCCCCCHH
Confidence 66666543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=4.4e-09 Score=107.18 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=100.9
Q ss_pred CCccCEEEccCCccccCCChhhhhcCCCccEEEccCCcCCCCCccchhccccCcEEEccCCccCCcCCchhhccCCCCCE
Q 042884 324 HKRLRQLDVSNNNFQGHIPLEIGDILPNLISFNISMNALDGSIPSSFGNINLLKILDLSNNQLTGEIPEHLAVGCVYLDF 403 (614)
Q Consensus 324 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 403 (614)
...+..+.+..... .+....+....+++.+.+..+ +......+|.++..|+.+.+..+ ++ .+....|.++.+|+.
T Consensus 193 ~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 193 AKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKT 267 (379)
T ss_dssp TCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCE
T ss_pred ccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcc
Confidence 34444444443322 222333333566776666544 33344566777777777777665 44 566666666666666
Q ss_pred EEccCCcccccccCCccEEEcCCCcCCccCCccccCCCcCCEEECcCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCcc
Q 042884 404 LALSNNSLEGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 483 (614)
Q Consensus 404 L~l~~n~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~ 483 (614)
+.+.. .+......+|.++++|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...
T Consensus 268 i~l~~-------------------~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 268 LNFYA-------------------KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY 327 (379)
T ss_dssp EEECC-------------------CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred ccccc-------------------cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence 65532 233344567889999999999988888888889999999999999765 6656777
Q ss_pred cccCCCCCCeEeccCC
Q 042884 484 QLVELKTLEVFSLAFN 499 (614)
Q Consensus 484 ~l~~l~~L~~L~l~~N 499 (614)
+|.++++|+.+.+..+
T Consensus 328 aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 328 AFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCCCCCCTT
T ss_pred HhhCCCCCCEEEECCc
Confidence 8999999998887654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=2.9e-09 Score=106.62 Aligned_cols=63 Identities=19% Similarity=0.392 Sum_probs=34.4
Q ss_pred CCcCCEEECcCCcCCCCCCcCC---CCCCCCCEEEccCCcCCCC----CcccccCCCCCCeEeccCCcCc
Q 042884 440 LTRIQTLNLSHNNLTGLIPSTF---SNLKHIESLDLSYNKLNGK----IPHQLVELKTLEVFSLAFNNLS 502 (614)
Q Consensus 440 l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~ 502 (614)
+++|++|+|++|.+....+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5666666666666542211111 2356667777777666542 2223334566777777777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=2.5e-08 Score=99.89 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=115.0
Q ss_pred cccccCCCCCCCEEECCCcccCC-----CCCCCCc-ccCCCCCCCEEeCCCCCCCccchHHHhhccCCcEEeccCccccC
Q 042884 10 LLQSMGSLPSLNTLYLKHNNFTG-----TATTTTQ-ELHNFTNLEYSTLSGSSLHISLLQSIASLFPSLKNLSMSYCEVN 83 (614)
Q Consensus 10 l~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~l~l~~~~~~~ 83 (614)
+.+++.++++|+.|.+....... .....+. .+..+++|+.|++++|.-. ..+. + .+++|++|.+..+.+..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 45566778899999887653321 1111133 4567789999999877311 2222 2 36788999888776543
Q ss_pred CccCCCCCCCCCCCCEEeCcC--cccCCC---cchhhHhh-hcCCCcCEEeccCCcCCCCCCCcCchhh---cCCCCCCe
Q 042884 84 GVVRGQGFPHFKSLEHLNMER--ARIAPN---TSFLQIIG-ESTPSLKYLSLSDFTLSTNSSRILDRGL---CSLMHLQE 154 (614)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~--n~l~~~---~~~~~~l~-~~l~~L~~L~L~~n~l~~~~~~i~~~~~---~~l~~L~~ 154 (614)
.....-....+++|++|+|+. +...+. ..+...+. ..+++|++|++.+|.+.+ .... .+ ..+++|++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~---~~~~-~la~a~~~~~L~~ 283 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN---VVVE-MFLESDILPQLET 283 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH---HHHH-HHHHCSSGGGCSE
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch---HHHH-HHHhCccCCCCCE
Confidence 222100123688999998853 221110 01112222 237899999999888763 2211 22 35789999
Q ss_pred EECcCCcccccc----CccccCCCCCcEEEcccCCCCCccCCCCCCC-CCCCCEEEcccCc
Q 042884 155 LYKVNNDLRGSL----PWCVANMTSLRILDVSSNQLTGSIASSPLAH-LTSIEELHLSDNH 210 (614)
Q Consensus 155 L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~ 210 (614)
|+|+.|.+++.. +..+..+++|+.|++++|.+++..-. .+.. + ..+++++.+.
T Consensus 284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHHHC--CSEEECCSBC
T ss_pred EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHHHHc--CCEEEecCCc
Confidence 999999988643 33345678999999999988732211 1221 1 3568888775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=1.2e-08 Score=92.11 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=44.8
Q ss_pred CCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEEC--cCCcccccc----
Q 042884 95 KSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYK--VNNDLRGSL---- 166 (614)
Q Consensus 95 ~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L--~~n~i~~~~---- 166 (614)
++|++|+|++|.+.. ...+.+.+.. .++|++|+|++|.+.+.........+...+.|++|++ ++|.|+...
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 445555555555431 0112233333 4556666666665543221112224455556666666 556665432
Q ss_pred CccccCCCCCcEEEcccCCCC
Q 042884 167 PWCVANMTSLRILDVSSNQLT 187 (614)
Q Consensus 167 ~~~~~~l~~L~~L~L~~n~l~ 187 (614)
...+...++|++|+|++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 233444466666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=9.8e-08 Score=86.09 Aligned_cols=120 Identities=20% Similarity=0.125 Sum_probs=69.1
Q ss_pred CCCCCCCCEEeCcCc-ccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccc--
Q 042884 91 FPHFKSLEHLNMERA-RIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGS-- 165 (614)
Q Consensus 91 ~~~l~~L~~L~l~~n-~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~-- 165 (614)
+...+.|++|++++| .+.. ...+...+.. .++|++|+|++|.+.+.........+...+.|++|+|++|.|++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 334556666666666 5542 1122333444 567777777777765422222223455556777777777777653
Q ss_pred --cCccccCCCCCcEEEc--ccCCCCCc----cCCCCCCCCCCCCEEEcccCcCc
Q 042884 166 --LPWCVANMTSLRILDV--SSNQLTGS----IASSPLAHLTSIEELHLSDNHFR 212 (614)
Q Consensus 166 --~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~ 212 (614)
+..++...++|++|+| ++|.+.+. +. ..+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~-~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH-HHHHhCCCcCEEeccCCCCC
Confidence 2445566677777777 66776522 11 12444567777777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=1.6e-07 Score=88.99 Aligned_cols=66 Identities=32% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCCcCCEEECcCCcCCCC--CCcCCCCCCCCCEEEccCCcCCCCCcccccCCC--CCCeEeccCCcCcccCC
Q 042884 439 NLTRIQTLNLSHNNLTGL--IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK--TLEVFSLAFNNLSGEIP 506 (614)
Q Consensus 439 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~ 506 (614)
++++|+.|+|++|+|+++ ++..+..+++|+.|+|++|+|++. +.+..+. .|++|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345555555555555542 223344555555555555555533 1222222 56666666666554443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=2.4e-07 Score=87.78 Aligned_cols=80 Identities=24% Similarity=0.283 Sum_probs=63.7
Q ss_pred cccCCccEEEcCCCcCCc--cCCccccCCCcCCEEECcCCcCCCCCCcCCCCCC--CCCEEEccCCcCCCCCcc------
Q 042884 414 KVLSLLSGLDLSCNKLIG--HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK--HIESLDLSYNKLNGKIPH------ 483 (614)
Q Consensus 414 ~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~ls~N~l~~~~~~------ 483 (614)
..++.|+.|+|++|++++ .++..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+..|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347899999999999997 3456778899999999999999876 3344444 999999999999875552
Q ss_pred -cccCCCCCCeEe
Q 042884 484 -QLVELKTLEVFS 495 (614)
Q Consensus 484 -~l~~l~~L~~L~ 495 (614)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 366788888775
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.07 E-value=5.9e-06 Score=69.23 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=41.5
Q ss_pred CEEECcCCcCC-CCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccCCcCccc
Q 042884 444 QTLNLSHNNLT-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAFNNLSGE 504 (614)
Q Consensus 444 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 504 (614)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 46778888876 23343332 3678888888888876667777788888888888877753
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=2.7e-06 Score=74.58 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=53.9
Q ss_pred ccccccCCCCCCCEEECCCcccCCCCCCCCcccCCCCCCCEEeCCCCC-CCccchHHHhhc----cCCcEEeccCccccC
Q 042884 9 KLLQSMGSLPSLNTLYLKHNNFTGTATTTTQELHNFTNLEYSTLSGSS-LHISLLQSIASL----FPSLKNLSMSYCEVN 83 (614)
Q Consensus 9 ~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~l----~~l~~l~l~~~~~~~ 83 (614)
.+|.....-..|++||++++.|+..+ +..+..+++|++|+|++|. ++..-...++.+ ++|++|++++|..++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred cCCcccCCCceEeEEeCcCCCccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 34443323346888888888877654 5567788888888888884 665544555542 346666666654322
Q ss_pred CccCCCCCCCCCCCCEEeCcCcc
Q 042884 84 GVVRGQGFPHFKSLEHLNMERAR 106 (614)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~n~ 106 (614)
..-. ..+.++++|++|+++++.
T Consensus 129 D~Gl-~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 129 DKGI-IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHH-HHGGGCTTCCEEEEESCT
T ss_pred HHHH-HHHhcCCCCCEEECCCCC
Confidence 1110 123445555555555543
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=3.3e-06 Score=74.06 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=55.8
Q ss_pred CccEEEcCCCcCCccCCccccCCCcCCEEECcCCc-CCCCCCcCCCCC----CCCCEEEccCCc-CCCCCcccccCCCCC
Q 042884 418 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL----KHIESLDLSYNK-LNGKIPHQLVELKTL 491 (614)
Q Consensus 418 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~ls~N~-l~~~~~~~l~~l~~L 491 (614)
.|+.||+++|.+++.--..+.++++|++|+|++|. +++.--..+..+ ++|++|++++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46777777777665544556778888888888884 553322334443 368888888874 664433456677888
Q ss_pred CeEeccCCc
Q 042884 492 EVFSLAFNN 500 (614)
Q Consensus 492 ~~L~l~~N~ 500 (614)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888875
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00073 Score=56.33 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=41.0
Q ss_pred EEEccCCcCC-CCCcccccCCCCCCeEeccCCcCcccCCccccccCCcCcccccCCcCCCCCCC
Q 042884 469 SLDLSYNKLN-GKIPHQLVELKTLEVFSLAFNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 531 (614)
Q Consensus 469 ~L~ls~N~l~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 531 (614)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+.+++.+++.+|||.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 6777777775 24454332 3577777777777766666667777777777777777777743
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.95 E-value=5.7e-05 Score=67.50 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=41.8
Q ss_pred CCCCEEeCcCcccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCC---ccccc----
Q 042884 95 KSLEHLNMERARIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNN---DLRGS---- 165 (614)
Q Consensus 95 ~~L~~L~l~~n~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n---~i~~~---- 165 (614)
..|+.|+|++|.+.. ...+.+.+.. .+.|++|+|++|.|.+........++..-+.|++|+|+++ .+...
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 445555555555431 1123333333 4556666666665553222222223444455666666543 22221
Q ss_pred cCccccCCCCCcEEEcccCC
Q 042884 166 LPWCVANMTSLRILDVSSNQ 185 (614)
Q Consensus 166 ~~~~~~~l~~L~~L~L~~n~ 185 (614)
+.+++..-+.|+.|+++.|.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCCcCeEeccCCC
Confidence 22334444566666666554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00067 Score=60.56 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCCCCEEeCcCc-ccCC--CcchhhHhhhcCCCcCEEeccCCcCCCCCCCcCchhhcCCCCCCeEECcCCccccccC--
Q 042884 93 HFKSLEHLNMERA-RIAP--NTSFLQIIGESTPSLKYLSLSDFTLSTNSSRILDRGLCSLMHLQELYKVNNDLRGSLP-- 167 (614)
Q Consensus 93 ~l~~L~~L~l~~n-~l~~--~~~~~~~l~~~l~~L~~L~L~~n~l~~~~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~-- 167 (614)
+-+.|++|+|+++ .+.. ...+.+.+.. .+.|+.|+|++|.+.+.........+..-+.|++|+|+.|.|.+...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 4467778888775 5541 1234455555 78999999999998754434444456667899999999999986433
Q ss_pred --ccccCCCCCcEEEcccCC---CCCc----cCCCCCCCCCCCCEEEcccCcCc
Q 042884 168 --WCVANMTSLRILDVSSNQ---LTGS----IASSPLAHLTSIEELHLSDNHFR 212 (614)
Q Consensus 168 --~~~~~l~~L~~L~L~~n~---l~~~----~~~~~~~~l~~L~~L~L~~n~~~ 212 (614)
+++..-+.|++|+|++|. +... +. .++..-+.|++|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCCcc
Confidence 445556789999998763 3311 11 12455688999999887653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.33 E-value=5.5 Score=30.72 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=20.1
Q ss_pred ccccCccccCCCCCcEEEcccCCCCCccCCCCCCCCCCCCEEEccc
Q 042884 163 RGSLPWCVANMTSLRILDVSSNQLTGSIASSPLAHLTSIEELHLSD 208 (614)
Q Consensus 163 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 208 (614)
+.+...+|.+|++|+.+.+-.+ ++ .|...+|.++.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 3334444555555555544433 22 34444455555555554443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.39 E-value=12 Score=28.69 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=22.5
Q ss_pred CCCCCCcCCCCCCCCCEEEccCCcCCCCCcccccCCCCCCeEeccC
Q 042884 453 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSLAF 498 (614)
Q Consensus 453 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~l~~ 498 (614)
++.+...+|.++++|+.+.+-.+ ++.+...+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555543 2224445555555555555543
Done!